##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 23:28:09 PST 2014",Epoch=1389770889993,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/DBVPG6044/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT DBVPG6044 chrI 76 . C T 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.332;DP=143;Dels=0.02;FS=2.565;HaplotypeScore=153.8212;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=-8.419;QD=0.56;ReadPosRankSum=6.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,42:140:99:110,0,121 chrI 77 . T C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.352;DP=157;Dels=0.02;FS=2.477;HaplotypeScore=146.7475;MLEAC=1;MLEAF=0.500;MQ=28.57;MQ0=0;MQRankSum=-7.955;QD=0.36;ReadPosRankSum=7.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,41:154:86:86,0,283 chrI 84 . G A 183.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.079;DP=167;Dels=0.02;FS=5.408;HaplotypeScore=89.7165;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=0;MQRankSum=-8.530;QD=1.10;ReadPosRankSum=4.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,61:163:99:213,0,732 chrI 93 . T C 262.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.008;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=66.5782;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=0;MQRankSum=-5.792;QD=1.14;ReadPosRankSum=5.237;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:158,72:230:99:292,0,951 chrI 111 . C T 1478.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.765;DP=511;Dels=0.00;FS=0.000;HaplotypeScore=414.6691;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=3;MQRankSum=-1.771;QD=2.89;ReadPosRankSum=1.054;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:390,120:511:99:1508,0,1057 chrI 136 . G A 6741.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=630;Dels=0.00;FS=0.000;HaplotypeScore=332.9387;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=8;MQRankSum=1.358;QD=10.70;ReadPosRankSum=-0.817;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:1,616:630:99:6741,844,0 chrI 262 . A G 6092.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=532;DS;Dels=0.00;FS=20.568;HaplotypeScore=438.7901;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=5;MQRankSum=-1.608;QD=11.45;ReadPosRankSum=0.140;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:43,488:532:99:6092,720,0 chrI 265 . A G 1505.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.485;DP=512;DS;Dels=0.00;FS=175.661;HaplotypeScore=431.7949;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=5;MQRankSum=1.305;QD=2.94;ReadPosRankSum=4.642;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:366,145:512:99:1535,0,2914 chrI 268 . A C 2733.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.246;DP=435;DS;Dels=0.00;FS=382.310;HaplotypeScore=424.3216;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=5;MQRankSum=5.528;QD=6.28;ReadPosRankSum=-4.196;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:167,268:435:99:2763,0,473 chrI 270 . C T 3221.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.542;DP=411;DS;Dels=0.00;FS=349.203;HaplotypeScore=423.6384;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=5;MQRankSum=5.120;QD=7.84;ReadPosRankSum=-5.997;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,246:411:99:3251,0,479 chrI 285 . G C 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.937;DP=276;Dels=0.00;FS=129.839;HaplotypeScore=170.8467;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=7;MQRankSum=3.128;QD=0.08;ReadPosRankSum=-2.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:208,68:276:51:51,0,1236 chrI 286 . A T 614.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=274;Dels=0.00;FS=3.034;HaplotypeScore=222.6679;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=7;MQRankSum=-0.216;QD=2.24;ReadPosRankSum=-6.792;SB=-1.284e+03 GT:AD:DP:GQ:PL 0/1:83,191:274:99:644,0,661 chrI 287 . C G 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DP=280;Dels=0.00;FS=123.764;HaplotypeScore=273.4090;MLEAC=1;MLEAF=0.500;MQ=24.07;MQ0=7;MQRankSum=2.411;QD=0.19;ReadPosRankSum=-3.629;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:209,71:280:82:82,0,1260 chrI 292 . T C 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766;DP=365;Dels=0.00;FS=66.415;HaplotypeScore=379.3732;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=7;MQRankSum=4.810;QD=0.44;ReadPosRankSum=-6.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:334,31:365:99:189,0,1489 chrI 296 . C T 396.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;DP=385;Dels=0.00;FS=34.633;HaplotypeScore=314.4877;MLEAC=1;MLEAF=0.500;MQ=25.71;MQ0=7;MQRankSum=4.923;QD=1.03;ReadPosRankSum=-2.723;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:266,119:385:99:426,0,1310 chrI 305 . C G 2574 filter AC=2;AF=1.00;AN=2;DP=460;Dels=0.00;FS=0.000;HaplotypeScore=226.1145;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=9;QD=5.60;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,453:460:99:2607,329,0 chrI 349 . C T 6031.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=800;Dels=0.00;FS=21.686;HaplotypeScore=278.4001;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=10;MQRankSum=-2.817;QD=7.54;ReadPosRankSum=-3.747;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:56,742:800:99:6031,351,0 chrI 356 . G A 4072.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.183;DP=848;Dels=0.00;FS=57.871;HaplotypeScore=277.3634;MLEAC=1;MLEAF=0.500;MQ=29.83;MQ0=10;MQRankSum=-1.434;QD=4.80;ReadPosRankSum=2.209;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:340,508:848:99:4072,0,2453 chrI 358 . G A 4101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.476;DP=864;Dels=0.00;FS=35.759;HaplotypeScore=355.4129;MLEAC=1;MLEAF=0.500;MQ=30.29;MQ0=10;MQRankSum=-6.791;QD=4.75;ReadPosRankSum=3.846;SB=-6.920e+02 GT:AD:DP:GQ:PL 0/1:278,585:864:99:4101,0,2219 chrI 396 . C G 2614.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DP=979;DS;Dels=0.00;FS=9.135;HaplotypeScore=176.9526;MLEAC=1;MLEAF=0.500;MQ=31.98;MQ0=2;MQRankSum=3.350;QD=2.67;ReadPosRankSum=6.531;SB=-1.449e+03 GT:AD:DP:GQ:PL 0/1:555,422:979:99:2644,0,3337 chrI 472 . C T 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.239;DP=548;DS;Dels=0.00;FS=0.000;HaplotypeScore=110.4324;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=5;MQRankSum=-1.914;QD=0.27;ReadPosRankSum=-3.062;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:480,60:548:99:178,0,5592 chrI 476 . G C,T 6279.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=487;DS;Dels=0.00;FS=0.000;HaplotypeScore=154.1817;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.03;MQ0=5;QD=12.89;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/2:0,249,237:487:99:6279,2641,2129,3638,0,3273 chrI 485 . T C 2129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;DP=407;DS;Dels=0.03;FS=44.279;HaplotypeScore=577.1408;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=5;MQRankSum=2.893;QD=5.23;ReadPosRankSum=-3.053;SB=-1.450e+03 GT:AD:DP:GQ:PL 0/1:136,258:394:99:2159,0,1390 chrI 509 . G A 1337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.320;DP=404;Dels=0.00;FS=1.987;HaplotypeScore=412.8224;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=11;MQRankSum=2.645;QD=3.31;ReadPosRankSum=-3.415;SB=-1.980e+03 GT:AD:DP:GQ:PL 0/1:102,276:404:99:1367,0,1045 chrI 528 . T C 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.937;DP=510;Dels=0.00;FS=0.969;HaplotypeScore=422.0451;MLEAC=1;MLEAF=0.500;MQ=25.70;MQ0=13;MQRankSum=-0.260;QD=0.42;ReadPosRankSum=7.327;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:431,77:510:99:246,0,3148 chrI 537 . T C 2157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DP=508;Dels=0.00;FS=36.762;HaplotypeScore=326.1053;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=15;MQRankSum=-1.959;QD=4.25;ReadPosRankSum=4.870;SB=-1.085e+03 GT:AD:DP:GQ:PL 0/1:242,266:508:99:2187,0,1115 chrI 546 . C T 1149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.439;DP=483;Dels=0.00;FS=36.863;HaplotypeScore=272.5666;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=14;MQRankSum=2.101;QD=2.38;ReadPosRankSum=-4.330;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:297,186:483:99:1179,0,1888 chrI 583 . C T 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.495;DP=561;Dels=0.00;FS=113.881;HaplotypeScore=130.6376;MLEAC=1;MLEAF=0.500;MQ=26.33;MQ0=7;MQRankSum=-2.007;QD=0.07;ReadPosRankSum=-4.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:483,77:561:68:68,0,5197 chrI 588 . C A 157.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.205;DP=578;Dels=0.00;FS=41.718;HaplotypeScore=316.0884;MLEAC=1;MLEAF=0.500;MQ=26.37;MQ0=5;MQRankSum=-3.379;QD=0.27;ReadPosRankSum=-1.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:491,86:578:99:187,0,5273 chrI 589 . G T 842.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.831;DP=579;Dels=0.00;FS=18.471;HaplotypeScore=317.8637;MLEAC=1;MLEAF=0.500;MQ=26.36;MQ0=5;MQRankSum=0.175;QD=1.45;ReadPosRankSum=-1.056;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:446,131:579:99:872,0,4629 chrI 594 . T C 689.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.651;DP=579;Dels=0.00;FS=189.874;HaplotypeScore=258.0789;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=5;MQRankSum=-4.295;QD=1.19;ReadPosRankSum=0.940;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:401,155:579:99:719,0,4778 chrI 595 . C G 1610.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;DP=570;Dels=0.00;FS=62.896;HaplotypeScore=246.9737;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=5;MQRankSum=-5.269;QD=2.82;ReadPosRankSum=1.208;SB=-3.460e+02 GT:AD:DP:GQ:PL 0/1:332,227:570:99:1640,0,3468 chrI 610 . G A 6280.01 filter AC=2;AF=1.00;AN=2;DP=499;Dels=0.01;FS=0.000;HaplotypeScore=46.9789;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=4;QD=12.59;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,494:494:99:6280,772,0 chrI 627 . C T 1990.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.772;DP=485;Dels=0.00;FS=376.003;HaplotypeScore=144.0006;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=3;MQRankSum=8.125;QD=4.10;ReadPosRankSum=-1.160;SB=-7.950e+02 GT:AD:DP:GQ:PL 0/1:313,171:485:99:2020,0,3182 chrI 633 . T C 3936.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.778;DP=499;Dels=0.00;FS=15.071;HaplotypeScore=172.0396;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=2;MQRankSum=0.253;QD=7.89;ReadPosRankSum=0.408;SB=-1.094e+03 GT:AD:DP:GQ:PL 0/1:138,360:498:99:3936,0,1484 chrI 650 . C A 1357.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.966;DP=532;Dels=0.00;FS=171.092;HaplotypeScore=223.0039;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=5;MQRankSum=-1.619;QD=2.55;ReadPosRankSum=1.938;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:352,180:532:99:1387,0,4347 chrI 654 . C T 2032.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.823;DP=520;Dels=0.00;FS=96.516;HaplotypeScore=220.7633;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=5;MQRankSum=0.160;QD=3.91;ReadPosRankSum=2.699;SB=-1.394e+03 GT:AD:DP:GQ:PL 0/1:290,206:520:99:2062,0,3207 chrI 659 . A G 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.593;DP=508;Dels=0.00;FS=0.567;HaplotypeScore=205.9657;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=5;MQRankSum=-0.817;QD=0.04;ReadPosRankSum=2.280;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:443,65:508:52:52,0,5105 chrI 675 . A G 737.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.932;DP=494;Dels=0.00;FS=250.678;HaplotypeScore=281.7678;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=6;MQRankSum=2.089;QD=1.49;ReadPosRankSum=2.337;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:280,105:494:99:767,0,3139 chrI 681 . G A 2051.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.854;DP=482;Dels=0.01;FS=57.980;HaplotypeScore=298.1119;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=6;MQRankSum=0.944;QD=4.26;ReadPosRankSum=-3.212;SB=-1.535e+03 GT:AD:DP:GQ:PL 0/1:205,209:478:99:2081,0,2221 chrI 686 . A G 1514.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.976;DP=485;Dels=0.00;FS=83.689;HaplotypeScore=312.0275;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=6;MQRankSum=2.422;QD=3.12;ReadPosRankSum=-0.152;SB=-1.139e+03 GT:AD:DP:GQ:PL 0/1:302,178:484:99:1544,0,3345 chrI 693 . T A 664.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;DP=482;Dels=0.00;FS=208.252;HaplotypeScore=378.7100;MLEAC=1;MLEAF=0.500;MQ=29.82;MQ0=7;MQRankSum=0.683;QD=1.38;ReadPosRankSum=-0.348;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:373,109:482:99:694,0,3938 chrI 701 . C A 868.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.355;DP=500;Dels=0.00;FS=41.124;HaplotypeScore=197.4960;MLEAC=1;MLEAF=0.500;MQ=30.79;MQ0=7;MQRankSum=-4.113;QD=1.74;ReadPosRankSum=-0.375;SB=-4.750e+02 GT:AD:DP:GQ:PL 0/1:326,170:500:99:898,0,4343 chrI 738 . C A 955.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.909;DP=584;Dels=0.00;FS=11.754;HaplotypeScore=84.7931;MLEAC=1;MLEAF=0.500;MQ=32.50;MQ0=6;MQRankSum=-6.382;QD=1.64;ReadPosRankSum=0.064;SB=-1.048e+03 GT:AD:DP:GQ:PL 0/1:368,215:584:99:985,0,5074 chrI 743 . A C 490.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.861;DP=582;Dels=0.00;FS=5.463;HaplotypeScore=75.1930;MLEAC=1;MLEAF=0.500;MQ=32.32;MQ0=6;MQRankSum=-6.244;QD=0.84;ReadPosRankSum=0.627;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:379,163:582:99:520,0,5334 chrI 768 . T C 1394.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.147;DP=536;Dels=0.00;FS=228.712;HaplotypeScore=438.6583;MLEAC=1;MLEAF=0.500;MQ=33.31;MQ0=4;MQRankSum=-0.361;QD=2.60;ReadPosRankSum=4.316;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:319,213:535:99:1424,0,3323 chrI 769 . C G 1784.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.742;DP=531;Dels=0.00;FS=247.073;HaplotypeScore=436.3083;MLEAC=1;MLEAF=0.500;MQ=33.39;MQ0=4;MQRankSum=-1.362;QD=3.36;ReadPosRankSum=4.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:311,211:530:99:1814,0,3078 chrI 772 . C T 2788.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.861;DP=505;Dels=0.00;FS=98.353;HaplotypeScore=432.5120;MLEAC=1;MLEAF=0.500;MQ=33.71;MQ0=3;MQRankSum=-7.248;QD=5.52;ReadPosRankSum=2.352;SB=-8.170e+02 GT:AD:DP:GQ:PL 0/1:164,340:505:99:2818,0,2230 chrI 774 . T C 1732.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;DP=493;Dels=0.00;FS=328.981;HaplotypeScore=405.7914;MLEAC=1;MLEAF=0.500;MQ=33.53;MQ0=3;MQRankSum=-3.013;QD=3.51;ReadPosRankSum=0.726;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,279:493:99:1762,0,3101 chrI 778 . A G 2150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.236;DP=522;Dels=0.00;FS=96.287;HaplotypeScore=402.8533;MLEAC=1;MLEAF=0.500;MQ=33.01;MQ0=3;MQRankSum=7.933;QD=4.12;ReadPosRankSum=0.746;SB=-7.540e+02 GT:AD:DP:GQ:PL 0/1:363,157:522:99:2180,0,2843 chrI 848 . C T 78.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DP=287;Dels=0.00;FS=13.107;HaplotypeScore=66.4806;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=1;MQRankSum=-7.792;QD=0.27;ReadPosRankSum=-3.633;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:156,130:287:99:108,0,2821 chrI 876 . T C 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.597;DP=476;Dels=0.00;FS=64.516;HaplotypeScore=39.1382;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=1;MQRankSum=-4.223;QD=0.11;ReadPosRankSum=0.146;SB=-6.030e+02 GT:AD:DP:GQ:PL 0/1:238,238:476:81:81,0,3779 chrI 899 . C T 325.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.255;DP=632;Dels=0.00;FS=109.317;HaplotypeScore=158.2688;MLEAC=1;MLEAF=0.500;MQ=30.16;MQ0=1;MQRankSum=1.135;QD=0.51;ReadPosRankSum=4.294;SB=-7.540e+02 GT:AD:DP:GQ:PL 0/1:361,270:632:99:355,0,5858 chrI 900 . A G 343.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.092;DP=638;Dels=0.00;FS=100.912;HaplotypeScore=162.2122;MLEAC=1;MLEAF=0.500;MQ=30.32;MQ0=1;MQRankSum=-0.654;QD=0.54;ReadPosRankSum=4.355;SB=-7.780e+02 GT:AD:DP:GQ:PL 0/1:365,270:638:99:373,0,6160 chrI 904 . G A 1106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.673;DP=698;Dels=0.00;FS=7.991;HaplotypeScore=126.7855;MLEAC=1;MLEAF=0.500;MQ=30.41;MQ0=1;MQRankSum=-2.184;QD=1.58;ReadPosRankSum=0.023;SB=-2.033e+03 GT:AD:DP:GQ:PL 0/1:330,364:698:99:1136,0,5680 chrI 925 . T C 2250.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.150;DP=875;Dels=0.00;FS=6.240;HaplotypeScore=165.0147;MLEAC=1;MLEAF=0.500;MQ=31.27;MQ0=1;MQRankSum=-0.322;QD=2.57;ReadPosRankSum=-1.927;SB=-3.093e+03 GT:AD:DP:GQ:PL 0/1:437,438:875:99:2280,0,7468 chrI 929 . A C 2577.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.497;DP=907;Dels=0.00;FS=2.329;HaplotypeScore=420.4746;MLEAC=1;MLEAF=0.500;MQ=31.29;MQ0=1;MQRankSum=-1.441;QD=2.84;ReadPosRankSum=-3.672;SB=-3.300e+03 GT:AD:DP:GQ:PL 0/1:437,467:907:99:2607,0,7598 chrI 1008 . A G 1756.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DP=811;Dels=0.00;FS=8.326;HaplotypeScore=118.8642;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=5;MQRankSum=-9.170;QD=2.17;ReadPosRankSum=0.132;SB=-1.301e+03 GT:AD:DP:GQ:PL 0/1:476,327:811:99:1786,0,6674 chrI 1013 . T C 1353.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.605;DP=801;Dels=0.00;FS=6.947;HaplotypeScore=252.6895;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=10;MQRankSum=-7.403;QD=1.69;ReadPosRankSum=0.035;SB=-8.800e+02 GT:AD:DP:GQ:PL 0/1:503,296:801:99:1383,0,7592 chrI 1020 . C T 528.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.013;DP=773;Dels=0.00;FS=253.883;HaplotypeScore=396.7765;MLEAC=1;MLEAF=0.500;MQ=29.40;MQ0=13;MQRankSum=-1.758;QD=0.68;ReadPosRankSum=0.729;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:636,131:773:99:558,0,7582 chrI 1025 . C T 7487.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=16.173;DP=751;Dels=0.00;FS=142.263;HaplotypeScore=466.9699;MLEAC=1;MLEAF=0.500;MQ=29.97;MQ0=14;MQRankSum=1.080;QD=9.97;ReadPosRankSum=5.431;SB=-2.775e+03 GT:AD:DP:GQ:PL 0/1:249,496:751:99:7487,0,920 chrI 1031 . G C 421.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.925;DP=757;Dels=0.00;FS=308.671;HaplotypeScore=550.4127;MLEAC=1;MLEAF=0.500;MQ=31.27;MQ0=14;MQRankSum=-2.310;QD=0.56;ReadPosRankSum=0.373;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:630,121:757:99:451,0,7848 chrI 1035 . A T 2220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;DP=780;Dels=0.00;FS=1.634;HaplotypeScore=621.1795;MLEAC=1;MLEAF=0.500;MQ=31.91;MQ0=14;MQRankSum=-5.281;QD=2.85;ReadPosRankSum=3.577;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:516,264:780:99:2250,0,6592 chrI 1036 . C T 181.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.059;DP=774;Dels=0.00;FS=283.594;HaplotypeScore=338.7126;MLEAC=1;MLEAF=0.500;MQ=32.03;MQ0=14;MQRankSum=-3.070;QD=0.23;ReadPosRankSum=0.019;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:655,119:774:99:211,0,8402 chrI 1074 . C A 684.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.601;DP=913;Dels=0.00;FS=80.797;HaplotypeScore=24.1575;MLEAC=1;MLEAF=0.500;MQ=35.08;MQ0=13;MQRankSum=0.268;QD=0.75;ReadPosRankSum=-1.915;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:721,186:913:99:714,0,9220 chrI 1084 . A T 669.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.840;DP=954;Dels=0.00;FS=52.765;HaplotypeScore=17.4774;MLEAC=1;MLEAF=0.500;MQ=35.44;MQ0=13;MQRankSum=0.451;QD=0.70;ReadPosRankSum=-3.519;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:751,202:954:99:699,0,10817 chrI 1101 . G A 4269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=15.024;DP=990;DS;Dels=0.00;FS=105.268;HaplotypeScore=813.7482;MLEAC=1;MLEAF=0.500;MQ=35.58;MQ0=9;MQRankSum=-11.200;QD=4.31;ReadPosRankSum=-2.090;SB=-3.636e+03 GT:AD:DP:GQ:PL 0/1:435,555:990:99:4269,0,7221 chrI 1112 . A C 224.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;DP=959;DS;Dels=0.00;FS=98.266;HaplotypeScore=921.7186;MLEAC=1;MLEAF=0.500;MQ=35.28;MQ0=4;MQRankSum=-5.260;QD=0.23;ReadPosRankSum=1.354;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:628,135:959:99:254,0,8797 chrI 1113 . G A 2007.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.123;DP=955;DS;Dels=0.00;FS=83.932;HaplotypeScore=921.6461;MLEAC=1;MLEAF=0.500;MQ=35.15;MQ0=3;MQRankSum=-6.477;QD=2.10;ReadPosRankSum=1.080;SB=-1.679e+03 GT:AD:DP:GQ:PL 0/1:605,347:955:99:2037,0,8437 chrI 1114 . T A 335.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;DP=960;DS;Dels=0.00;FS=12.026;HaplotypeScore=746.4772;MLEAC=1;MLEAF=0.500;MQ=35.03;MQ0=2;MQRankSum=-3.457;QD=0.35;ReadPosRankSum=-0.541;SB=-9.070e+02 GT:AD:DP:GQ:PL 0/1:745,215:960:99:365,0,10609 chrI 1126 . T A 4276.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;DP=949;DS;Dels=0.00;FS=66.529;HaplotypeScore=35.0569;MLEAC=1;MLEAF=0.500;MQ=33.40;MQ0=2;MQRankSum=-6.485;QD=4.51;ReadPosRankSum=0.458;SB=-5.180e+03 GT:AD:DP:GQ:PL 0/1:384,565:949:99:4276,0,5643 chrI 1133 . G T 4597.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.724;DP=911;DS;Dels=0.00;FS=54.997;HaplotypeScore=35.9680;MLEAC=1;MLEAF=0.500;MQ=32.59;MQ0=1;MQRankSum=-3.343;QD=5.05;ReadPosRankSum=0.308;SB=-4.997e+03 GT:AD:DP:GQ:PL 0/1:349,558:911:99:4597,0,4609 chrI 1141 . A G 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.299;DP=837;DS;Dels=0.00;FS=47.652;HaplotypeScore=759.3050;MLEAC=1;MLEAF=0.500;MQ=32.06;MQ0=1;MQRankSum=-2.409;QD=0.39;ReadPosRankSum=0.914;SB=-4.291e+03 GT:AD:DP:GQ:PL 0/1:322,514:837:99:355,0,4181 chrI 1155 . A G 1390.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850;DP=725;DS;Dels=0.00;FS=100.910;HaplotypeScore=317.1469;MLEAC=1;MLEAF=0.500;MQ=30.80;MQ0=0;MQRankSum=1.840;QD=1.92;ReadPosRankSum=3.530;SB=-1.978e+03 GT:AD:DP:GQ:PL 0/1:464,256:725:99:1420,0,4902 chrI 1175 . T C 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.427;DP=758;DS;Dels=0.00;FS=154.786;HaplotypeScore=116.4757;MLEAC=1;MLEAF=0.500;MQ=27.41;MQ0=3;MQRankSum=3.956;QD=0.06;ReadPosRankSum=2.947;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:665,92:758:75:75,0,4351 chrI 1176 . T C 795.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.995;DP=758;DS;Dels=0.00;FS=169.215;HaplotypeScore=110.8495;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=3;MQRankSum=3.140;QD=1.05;ReadPosRankSum=1.772;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:571,186:758:99:825,0,3820 chrI 1180 . G T 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.149;DP=755;DS;Dels=0.00;FS=126.928;HaplotypeScore=96.6929;MLEAC=1;MLEAF=0.500;MQ=27.05;MQ0=4;MQRankSum=3.601;QD=0.07;ReadPosRankSum=1.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:647,106:755:86:86,0,4296 chrI 1184 . A T 138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DP=743;DS;Dels=0.00;FS=158.812;HaplotypeScore=96.8368;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=5;MQRankSum=5.086;QD=0.19;ReadPosRankSum=1.676;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:636,107:743:99:168,0,4510 chrI 1193 . A T 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.558;DP=751;Dels=0.00;FS=159.736;HaplotypeScore=41.8436;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=10;MQRankSum=6.053;QD=0.13;ReadPosRankSum=0.328;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:638,113:751:99:124,0,4684 chrI 1217 . C T 2230.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=15.776;DP=736;Dels=0.00;FS=72.620;HaplotypeScore=21.3813;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=15;MQRankSum=-3.353;QD=3.03;ReadPosRankSum=7.176;SB=-7.780e+02 GT:AD:DP:GQ:PL 0/1:420,314:736:99:2260,0,3697 chrI 1263 . C T 5482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.870;DP=675;Dels=0.00;FS=60.843;HaplotypeScore=23.7039;MLEAC=1;MLEAF=0.500;MQ=36.94;MQ0=19;MQRankSum=-11.520;QD=8.12;ReadPosRankSum=-4.493;SB=-1.030e+03 GT:AD:DP:GQ:PL 0/1:291,375:675:99:5482,0,4500 chrI 1302 . A G 5027.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.767;DP=617;Dels=0.00;FS=59.823;HaplotypeScore=69.2374;MLEAC=1;MLEAF=0.500;MQ=38.24;MQ0=6;MQRankSum=-11.675;QD=8.15;ReadPosRankSum=4.908;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:257,360:617:99:5027,0,3909 chrI 1337 . G A 174.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DP=467;Dels=0.00;FS=43.402;HaplotypeScore=45.1395;MLEAC=1;MLEAF=0.500;MQ=35.90;MQ0=3;MQRankSum=-3.534;QD=0.37;ReadPosRankSum=3.963;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:402,65:467:99:204,0,5989 chrI 1342 . T C 190.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.231;DP=418;Dels=0.00;FS=44.643;HaplotypeScore=60.1679;MLEAC=1;MLEAF=0.500;MQ=35.44;MQ0=2;MQRankSum=-2.466;QD=0.45;ReadPosRankSum=3.324;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:348,60:418:99:220,0,5429 chrI 1370 . A T 176.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050;DP=261;Dels=0.00;FS=25.202;HaplotypeScore=38.6888;MLEAC=1;MLEAF=0.500;MQ=27.75;MQ0=1;MQRankSum=-6.170;QD=0.67;ReadPosRankSum=0.168;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:157,104:261:99:206,0,1857 chrI 1379 . T C 1656 SnpCluster AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=0;QD=8.45;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,190:196:99:1689,210,0 chrI 1382 . G A 1778 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=70.3527;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=0;QD=9.21;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,193:193:99:1811,216,0 chrI 1386 . C A 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.499;DP=204;Dels=0.00;FS=53.100;HaplotypeScore=80.2498;MLEAC=1;MLEAF=0.500;MQ=21.06;MQ0=3;MQRankSum=-6.082;QD=0.63;ReadPosRankSum=1.093;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,102:204:99:159,0,1122 chrI 1397 . A G 1834 filter AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=81.2399;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=4;QD=8.19;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,223:224:99:1867,233,0 chrI 1406 . G A 330.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.013;DP=260;Dels=0.00;FS=56.918;HaplotypeScore=14.7120;MLEAC=1;MLEAF=0.500;MQ=21.34;MQ0=7;MQRankSum=-4.391;QD=1.27;ReadPosRankSum=0.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,122:260:99:360,0,1246 chrI 1416 . G T 1088.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.466;DP=258;Dels=0.00;FS=3.523;HaplotypeScore=11.5573;MLEAC=1;MLEAF=0.500;MQ=21.52;MQ0=8;MQRankSum=5.129;QD=4.22;ReadPosRankSum=8.607;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,115:258:99:1118,0,524 chrI 1483 . C A 1237 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=13.9479;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=5;QD=10.39;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:1270,156,0 chrI 1505 . T G 213.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.129;DP=66;Dels=0.02;FS=26.696;HaplotypeScore=31.1172;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=2;MQRankSum=1.044;QD=3.23;ReadPosRankSum=-4.627;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:37,28:65:99:243,0,437 chrI 1506 . T G 839 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=56.7763;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=1;QD=12.91;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:1,63:64:99:872,105,0 chrI 1518 . T C 407 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.8154;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=0;MQRankSum=-0.289;QD=11.31;ReadPosRankSum=-0.866;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:54:440,54,0 chrI 1521 . C A 413 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=37;Dels=0.00;FS=32.758;HaplotypeScore=20.8854;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=0;MQRankSum=1.687;QD=11.16;ReadPosRankSum=2.850;SB=-6.548e-03 GT:AD:DP:GQ:PL 1/1:7,30:37:54:446,54,0 chrI 1526 . C T 400 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=17.0366;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=0;QD=12.90;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:51:433,51,0 chrI 1546 . T C 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;DP=43;Dels=0.00;FS=2.534;HaplotypeScore=12.3471;MLEAC=1;MLEAF=0.500;MQ=26.09;MQ0=0;MQRankSum=1.823;QD=2.14;ReadPosRankSum=-0.988;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,11:43:99:122,0,189 chrI 1547 . G A 236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;DP=42;Dels=0.00;FS=16.724;HaplotypeScore=12.3471;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=0;MQRankSum=1.127;QD=5.62;ReadPosRankSum=1.461;SB=-6.656e-03 GT:AD:DP:GQ:PL 0/1:17,25:42:42:266,0,42 chrI 1560 . C A 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;DP=36;Dels=0.00;FS=5.330;HaplotypeScore=11.7496;MLEAC=1;MLEAF=0.500;MQ=25.53;MQ0=0;MQRankSum=1.607;QD=1.69;ReadPosRankSum=-1.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,10:36:91:91,0,130 chrI 1568 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;DP=32;Dels=0.00;FS=8.768;HaplotypeScore=9.8238;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=1;MQRankSum=2.457;QD=1.13;ReadPosRankSum=-4.025;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,11:32:66:66,0,90 chrI 1590 . T C 127.06 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.9334;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=2;QD=4.54;SB=-1.391e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:160,21,0 chrI 1609 . G A 304 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.14;MQ0=7;QD=5.96;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:45:337,45,0 chrI 1615 . T A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;DP=51;Dels=0.00;FS=7.619;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=7;MQRankSum=0.130;QD=0.35;ReadPosRankSum=-2.534;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:30,21:51:48:48,0,222 chrI 1657 . C T 246.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.463;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=9.2226;MLEAC=1;MLEAF=0.500;MQ=18.32;MQ0=11;MQRankSum=3.715;QD=4.65;ReadPosRankSum=-2.959;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:29,24:53:5:276,0,5 chrI 1733 . T A 867.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.889;DP=136;Dels=0.00;FS=1.880;HaplotypeScore=19.7170;MLEAC=1;MLEAF=0.500;MQ=29.43;MQ0=9;MQRankSum=-1.738;QD=6.38;ReadPosRankSum=2.965;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:75,61:136:99:897,0,1124 chrI 1770 . T G 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.619;DP=419;Dels=0.00;FS=10.502;HaplotypeScore=70.7170;MLEAC=1;MLEAF=0.500;MQ=30.35;MQ0=37;MQRankSum=-3.492;QD=0.28;ReadPosRankSum=2.476;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:328,91:419:99:149,0,6191 chrI 1774 . A G 2950.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.894;DP=433;Dels=0.00;FS=0.000;HaplotypeScore=64.3915;MLEAC=1;MLEAF=0.500;MQ=29.98;MQ0=37;MQRankSum=5.505;QD=6.81;ReadPosRankSum=3.473;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:260,171:433:99:2980,0,3246 chrI 1798 . C T 240.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.057;DP=411;Dels=0.00;FS=0.000;HaplotypeScore=122.8212;MLEAC=1;MLEAF=0.500;MQ=29.44;MQ0=44;MQRankSum=0.125;QD=0.58;ReadPosRankSum=4.262;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:349,62:411:99:270,0,5796 chrI 1802 . T C 3056.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=122.1105;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=45;MQRankSum=5.263;QD=7.58;ReadPosRankSum=-5.873;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:173,229:403:99:3086,0,2729 chrI 1804 . T A 299.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.810;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=119.7445;MLEAC=1;MLEAF=0.500;MQ=29.29;MQ0=46;MQRankSum=-0.280;QD=0.75;ReadPosRankSum=3.500;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:337,62:399:99:329,0,5828 chrI 1846 . A G 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.279;DP=202;Dels=0.00;FS=1.547;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=27;MQRankSum=0.786;QD=0.60;ReadPosRankSum=-0.877;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:172,30:202:99:151,0,2709 chrI 1915 . T C 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.383;DP=145;Dels=0.00;FS=2.565;HaplotypeScore=3.8198;MLEAC=1;MLEAF=0.500;MQ=25.90;MQ0=6;MQRankSum=-0.603;QD=0.78;ReadPosRankSum=-0.971;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:106,39:145:99:143,0,1373 chrI 1918 . A G 1952 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5415;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=6;MQRankSum=1.708;QD=13.19;ReadPosRankSum=1.708;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,146:148:99:1985,245,0 chrI 1927 . G A 2548 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.015;DP=233;Dels=0.00;FS=80.187;HaplotypeScore=51.7591;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=21;MQRankSum=0.282;QD=10.94;ReadPosRankSum=5.019;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:23,206:233:99:2581,186,0 chrI 1930 . C T 735.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;DP=274;Dels=0.00;FS=30.203;HaplotypeScore=58.8924;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=31;MQRankSum=0.750;QD=2.68;ReadPosRankSum=-0.586;SB=-5.460e+02 GT:AD:DP:GQ:PL 0/1:139,135:274:99:765,0,1520 chrI 1936 . G A 117.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DP=334;Dels=0.00;FS=68.305;HaplotypeScore=97.6854;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=46;MQRankSum=1.927;QD=0.35;ReadPosRankSum=-2.416;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:298,35:334:99:147,0,2911 chrI 1942 . G A 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.452;DP=367;Dels=0.00;FS=80.666;HaplotypeScore=12.4221;MLEAC=1;MLEAF=0.500;MQ=25.01;MQ0=52;MQRankSum=4.462;QD=0.59;ReadPosRankSum=-2.515;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:324,43:367:99:246,0,3088 chrI 1993 . A C 315.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.853;DP=587;Dels=0.00;FS=24.766;HaplotypeScore=136.7030;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=67;MQRankSum=-0.023;QD=0.54;ReadPosRankSum=-0.239;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:448,139:587:99:345,0,5523 chrI 2002 . G A 713.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.891;DP=570;Dels=0.00;FS=220.216;HaplotypeScore=132.5797;MLEAC=1;MLEAF=0.500;MQ=25.29;MQ0=65;MQRankSum=-1.990;QD=1.25;ReadPosRankSum=3.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:465,105:570:99:743,0,4745 chrI 2026 . G A 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.422;DP=422;Dels=0.00;FS=115.023;HaplotypeScore=61.1733;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=38;MQRankSum=0.971;QD=0.09;ReadPosRankSum=0.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:367,55:422:68:68,0,3833 chrI 2029 . T C 4949.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=384;Dels=0.00;FS=3.894;HaplotypeScore=38.7170;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=27;MQRankSum=-1.732;QD=12.89;ReadPosRankSum=1.712;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:1,378:384:99:4949,611,0 chrI 2062 . C T 588.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.534;DP=206;Dels=0.00;FS=35.541;HaplotypeScore=15.1410;MLEAC=1;MLEAF=0.500;MQ=27.35;MQ0=8;MQRankSum=1.710;QD=2.85;ReadPosRankSum=-1.583;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:103,101:206:99:618,0,873 chrI 2068 . C A 1730 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.3726;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=7;QD=10.12;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,165:171:99:1763,216,0 chrI 2128 . G A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.778;DP=223;Dels=0.00;FS=26.457;HaplotypeScore=35.6846;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=28;MQRankSum=-0.737;QD=0.13;ReadPosRankSum=-3.202;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,30:223:60:60,0,2309 chrI 2287 . T C 1850.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644;DP=447;Dels=0.00;FS=212.746;HaplotypeScore=21.3628;MLEAC=1;MLEAF=0.500;MQ=33.44;MQ0=0;MQRankSum=-0.350;QD=4.14;ReadPosRankSum=7.867;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:293,152:447:99:1880,0,4612 chrI 2331 . A C 1782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;DP=386;Dels=0.00;FS=137.135;HaplotypeScore=20.7141;MLEAC=1;MLEAF=0.500;MQ=37.37;MQ0=1;MQRankSum=-3.364;QD=4.62;ReadPosRankSum=-5.741;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,120:386:99:1812,0,4280 chrI 2340 . T C 963.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;DP=334;Dels=0.00;FS=81.514;HaplotypeScore=16.0551;MLEAC=1;MLEAF=0.500;MQ=37.22;MQ0=1;MQRankSum=-3.324;QD=2.88;ReadPosRankSum=-6.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:252,80:334:99:993,0,3891 chrI 2373 . T C 2598 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.317;DP=241;Dels=0.00;FS=18.527;HaplotypeScore=8.8749;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=7;MQRankSum=-0.243;QD=10.78;ReadPosRankSum=-0.135;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:6,234:241:99:2631,332,0 chrI 2406 . A C 1244 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.5909;MLEAC=2;MLEAF=1.00;MQ=24.31;MQ0=7;MQRankSum=-1.732;QD=5.73;ReadPosRankSum=1.699;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,216:217:99:1277,161,0 chrI 2418 . G A 1028 filter AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=19.68;MQ0=7;QD=4.87;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,211:211:99:1061,129,0 chrI 2419 . T C 1042 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=213;Dels=0.00;FS=3.361;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=19.30;MQ0=7;MQRankSum=-0.790;QD=4.89;ReadPosRankSum=1.665;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,212:213:99:1075,138,0 chrI 2447 . G A 1096.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;DP=304;Dels=0.00;FS=128.199;HaplotypeScore=2.7269;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=4;MQRankSum=-9.787;QD=3.61;ReadPosRankSum=1.100;SB=-8.810e+02 GT:AD:DP:GQ:PL 0/1:78,225:304:99:1126,0,893 chrI 2450 . T C 1146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.546;DP=318;Dels=0.00;FS=99.745;HaplotypeScore=2.7269;MLEAC=1;MLEAF=0.500;MQ=25.55;MQ0=4;MQRankSum=-10.601;QD=3.60;ReadPosRankSum=0.995;SB=-8.980e+02 GT:AD:DP:GQ:PL 0/1:88,230:318:99:1176,0,873 chrI 2468 . C T 1697.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=358;Dels=0.00;FS=189.608;HaplotypeScore=3.7446;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=0;MQRankSum=-7.520;QD=4.74;ReadPosRankSum=-0.016;SB=-1.273e+03 GT:AD:DP:GQ:PL 0/1:127,231:358:99:1727,0,1703 chrI 2477 . G A 1825.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.744;DP=392;Dels=0.00;FS=201.668;HaplotypeScore=4.7180;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=0;MQRankSum=6.412;QD=4.66;ReadPosRankSum=2.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:256,136:392:99:1855,0,2112 chrI 2478 . G C 1768.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DP=390;Dels=0.00;FS=198.608;HaplotypeScore=3.7313;MLEAC=1;MLEAF=0.500;MQ=28.09;MQ0=0;MQRankSum=9.620;QD=4.53;ReadPosRankSum=2.653;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:255,135:390:99:1798,0,1991 chrI 2480 . A G 1768.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.313;DP=393;Dels=0.00;FS=197.713;HaplotypeScore=3.7313;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=9.127;QD=4.50;ReadPosRankSum=2.969;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:258,135:393:99:1798,0,2346 chrI 2512 . A G 1464.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.849;DP=427;Dels=0.00;FS=218.740;HaplotypeScore=16.8500;MLEAC=1;MLEAF=0.500;MQ=29.22;MQ0=0;MQRankSum=4.364;QD=3.43;ReadPosRankSum=2.654;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:295,132:427:99:1494,0,2659 chrI 2523 . C T 708.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.143;DP=368;Dels=0.00;FS=121.567;HaplotypeScore=5.8993;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=2.807;QD=1.92;ReadPosRankSum=2.185;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:299,66:368:99:738,0,2997 chrI 2524 . T C 4483.01 SnpCluster AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=12.4029;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=12.70;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,350:352:99:4483,580,0 chrI 2533 . G T 4051.01 SnpCluster AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=1;QD=13.33;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:4051,494,0 chrI 2535 . C A 4147.01 SnpCluster AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=1;QD=13.64;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:4147,500,0 chrI 2536 . A G 4017.01 SnpCluster AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=1;QD=13.13;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:4017,500,0 chrI 2542 . T G 3864.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=331;Dels=0.00;FS=7.324;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=4;MQRankSum=-2.307;QD=11.67;ReadPosRankSum=2.435;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:2,329:331:99:3864,488,0 chrI 2548 . G A 255.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.064;DP=313;Dels=0.00;FS=117.719;HaplotypeScore=8.2562;MLEAC=1;MLEAF=0.500;MQ=32.22;MQ0=6;MQRankSum=0.198;QD=0.81;ReadPosRankSum=-2.863;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:271,41:313:99:285,0,2347 chrI 2623 . C T 1758.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.021;DP=258;Dels=0.00;FS=0.973;HaplotypeScore=8.8657;MLEAC=1;MLEAF=0.500;MQ=46.24;MQ0=6;MQRankSum=1.759;QD=6.81;ReadPosRankSum=-1.171;SB=-6.920e+02 GT:AD:DP:GQ:PL 0/1:128,130:258:99:1788,0,1668 chrI 2709 . G T 5163.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=20.73;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:5163,623,0 chrI 2825 . G C 4744.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=20.8501;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.10;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,230:236:99:4744,598,0 chrI 2891 . G T 5549.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.51;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5549,671,0 chrI 2914 . G A 1583.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.200;DP=237;Dels=0.00;FS=0.478;HaplotypeScore=13.0108;MLEAC=1;MLEAF=0.500;MQ=58.37;MQ0=0;MQRankSum=-0.667;QD=6.68;ReadPosRankSum=-0.371;SB=-8.290e+02 GT:AD:DP:GQ:PL 0/1:123,114:237:99:1613,0,1896 chrI 2970 . T C 1086.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280;DP=172;Dels=0.00;FS=11.732;HaplotypeScore=9.4674;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=0;MQRankSum=-1.741;QD=6.31;ReadPosRankSum=1.701;SB=-4.390e+02 GT:AD:DP:GQ:PL 0/1:92,80:172:99:1116,0,1532 chrI 3022 . C G 1054.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;DP=143;Dels=0.00;FS=17.809;HaplotypeScore=23.1935;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=-0.545;QD=7.37;ReadPosRankSum=-0.955;SB=-4.300e+02 GT:AD:DP:GQ:PL 0/1:64,77:143:99:1084,0,939 chrI 3106 . T A 1083.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.082;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-1.064;QD=6.56;ReadPosRankSum=1.342;SB=-4.400e+02 GT:AD:DP:GQ:PL 0/1:89,76:165:99:1113,0,1503 chrI 3197 . G A 995.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.413;DP=139;Dels=0.01;FS=1.370;HaplotypeScore=14.6285;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=0.249;QD=7.16;ReadPosRankSum=2.439;SB=-3.950e+02 GT:AD:DP:GQ:PL 0/1:77,61:138:99:1025,0,1167 chrI 3226 . G A 876.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.340;DP=131;Dels=0.00;FS=7.188;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=0.084;QD=6.69;ReadPosRankSum=1.166;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:76,54:130:99:906,0,1288 chrI 3688 . G A 1255.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.264;DP=187;Dels=0.01;FS=4.293;HaplotypeScore=6.4873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.496;QD=6.71;ReadPosRankSum=-0.450;SB=-5.710e+02 GT:AD:DP:GQ:PL 0/1:102,84:186:99:1285,0,1724 chrI 3942 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.5174;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.29;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4683,572,0 chrI 4084 . A G 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.152;QD=19.90;ReadPosRankSum=1.660;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:1,238:243:99:4836,610,0 chrI 4119 . G A 5644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=16.7581;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.810;QD=21.14;ReadPosRankSum=-0.033;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:1,264:267:99:5644,692,0 chrI 4162 . A C 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=250;Dels=0.00;FS=9.133;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.311;QD=19.68;ReadPosRankSum=3.398;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:4,245:250:99:4919,619,0 chrI 4324 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.9491;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.27;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4196,503,0 chrI 4331 . C A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.2258;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.33;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:3962,470,0 chrI 4399 . C A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.25;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4110,491,0 chrI 4517 . A G 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.921;QD=17.69;ReadPosRankSum=1.688;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,157:164:99:2934,356,0 chrI 4532 . A T 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=161;Dels=0.01;FS=3.038;HaplotypeScore=3.4908;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.054;QD=17.86;ReadPosRankSum=2.357;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2909,342,0 chrI 4684 . C A 2471 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.86;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2504,308,0 chrI 4818 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.48;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2954,348,0 chrI 4831 . A T 2904 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.0284;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.17;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2937,356,0 chrI 4832 . G A 780.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;DP=146;Dels=0.00;FS=0.623;HaplotypeScore=5.0284;MLEAC=1;MLEAF=0.500;MQ=54.21;MQ0=0;MQRankSum=1.759;QD=5.34;ReadPosRankSum=1.791;SB=-4.930e+02 GT:AD:DP:GQ:PL 0/1:80,64:146:99:810,0,1358 chrI 4859 . T C 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=3.013;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.267;QD=17.37;ReadPosRankSum=2.337;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2309,281,0 chrI 4992 . C A 710.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.311;DP=133;Dels=0.00;FS=1.436;HaplotypeScore=9.8834;MLEAC=1;MLEAF=0.500;MQ=55.60;MQ0=0;MQRankSum=-0.458;QD=5.34;ReadPosRankSum=-0.813;SB=-4.260e+02 GT:AD:DP:GQ:PL 0/1:68,64:133:99:740,0,1040 chrI 4993 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.8834;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.70;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2405,291,0 chrI 5434 . A G 1914.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.471;DP=253;Dels=0.00;FS=0.963;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=0.399;QD=7.57;ReadPosRankSum=0.608;SB=-1.000e+03 GT:AD:DP:GQ:PL 0/1:130,122:253:99:1944,0,2151 chrI 5446 . A T 2067.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;DP=238;Dels=0.00;FS=0.471;HaplotypeScore=12.0080;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=0.364;QD=8.68;ReadPosRankSum=-0.195;SB=-1.044e+03 GT:AD:DP:GQ:PL 0/1:119,119:238:99:2097,0,1920 chrI 5569 . G A 1587.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;DP=214;Dels=0.00;FS=1.076;HaplotypeScore=7.6057;MLEAC=1;MLEAF=0.500;MQ=57.81;MQ0=0;MQRankSum=-0.071;QD=7.42;ReadPosRankSum=0.281;SB=-7.810e+02 GT:AD:DP:GQ:PL 0/1:102,112:214:99:1617,0,1628 chrI 5576 . G C 1594.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.022;DP=216;Dels=0.00;FS=1.684;HaplotypeScore=12.3378;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-1.921;QD=7.38;ReadPosRankSum=0.770;SB=-8.390e+02 GT:AD:DP:GQ:PL 0/1:104,110:216:99:1624,0,1737 chrI 5627 . A G 1854.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.608;DP=257;Dels=0.00;FS=0.455;HaplotypeScore=21.4846;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=1.108;QD=7.21;ReadPosRankSum=1.848;SB=-1.047e+03 GT:AD:DP:GQ:PL 0/1:127,128:257:99:1884,0,2131 chrI 5914 . T C 1786.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DP=234;Dels=0.00;FS=1.095;HaplotypeScore=13.8507;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=0.089;QD=7.63;ReadPosRankSum=-1.084;SB=-6.210e+02 GT:AD:DP:GQ:PL 0/1:118,113:234:99:1816,0,1584 chrI 6031 . A G 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=226;Dels=0.00;FS=3.522;HaplotypeScore=9.4484;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.839;QD=21.28;ReadPosRankSum=1.670;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4809,593,0 chrI 6059 . A T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.17;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4478,551,0 chrI 6091 . C T 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.947;DP=181;Dels=0.00;FS=3.386;HaplotypeScore=11.8995;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=0.220;QD=15.01;ReadPosRankSum=-0.967;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:2750,330,0 chrI 6104 . T G 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=-0.767;QD=13.78;ReadPosRankSum=1.658;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:1976,251,0 chrI 6123 . G T 2244 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=15.16;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2277,275,0 chrI 6146 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.325;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=-0.121;QD=14.86;ReadPosRankSum=1.688;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:2396,299,0 chrI 6153 . G C 2431 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=15.19;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:2464,305,0 chrI 6289 . A G 843.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.690;DP=162;Dels=0.00;FS=0.591;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=51.01;MQ0=0;MQRankSum=-2.171;QD=5.20;ReadPosRankSum=1.253;SB=-4.440e+02 GT:AD:DP:GQ:PL 0/1:96,66:162:99:873,0,1685 chrI 6291 . A G 838.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.080;DP=160;Dels=0.00;FS=1.267;HaplotypeScore=6.4366;MLEAC=1;MLEAF=0.500;MQ=50.72;MQ0=0;MQRankSum=-2.174;QD=5.24;ReadPosRankSum=1.189;SB=-4.350e+02 GT:AD:DP:GQ:PL 0/1:94,65:160:99:868,0,1676 chrI 6314 . C T 659.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DP=179;Dels=0.00;FS=13.109;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=50.27;MQ0=0;MQRankSum=-2.199;QD=3.68;ReadPosRankSum=-1.020;SB=-4.110e+02 GT:AD:DP:GQ:PL 0/1:101,75:179:99:689,0,1857 chrI 6315 . G A 677.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.625;DP=177;Dels=0.00;FS=8.981;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=50.46;MQ0=0;MQRankSum=-2.039;QD=3.82;ReadPosRankSum=-0.130;SB=-4.170e+02 GT:AD:DP:GQ:PL 0/1:105,71:177:99:707,0,1853 chrI 6356 . A C 718.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.931;DP=195;Dels=0.00;FS=0.523;HaplotypeScore=7.3741;MLEAC=1;MLEAF=0.500;MQ=49.48;MQ0=0;MQRankSum=-3.955;QD=3.68;ReadPosRankSum=0.312;SB=-6.910e+02 GT:AD:DP:GQ:PL 0/1:106,89:195:99:748,0,2033 chrI 6365 . G A 783.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.669;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=1;MLEAF=0.500;MQ=49.02;MQ0=0;MQRankSum=-4.372;QD=4.04;ReadPosRankSum=1.333;SB=-8.090e+02 GT:AD:DP:GQ:PL 0/1:102,91:194:99:813,0,1893 chrI 6370 . T C 724.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;DP=194;Dels=0.00;FS=1.113;HaplotypeScore=13.4076;MLEAC=1;MLEAF=0.500;MQ=49.19;MQ0=0;MQRankSum=-5.141;QD=3.73;ReadPosRankSum=1.037;SB=-7.270e+02 GT:AD:DP:GQ:PL 0/1:98,93:194:99:754,0,1740 chrI 6410 . A C 797.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.649;DP=144;Dels=0.00;FS=7.438;HaplotypeScore=13.4945;MLEAC=1;MLEAF=0.500;MQ=51.44;MQ0=0;MQRankSum=-1.722;QD=5.53;ReadPosRankSum=0.237;SB=-5.530e+02 GT:AD:DP:GQ:PL 0/1:65,79:144:99:827,0,1128 chrI 6428 . T C 674.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.518;DP=129;Dels=0.00;FS=6.589;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=0;MQRankSum=-2.165;QD=5.22;ReadPosRankSum=0.026;SB=-4.130e+02 GT:AD:DP:GQ:PL 0/1:63,66:129:99:704,0,1050 chrI 6449 . G A 898.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.868;DP=129;Dels=0.00;FS=1.408;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=0;MQRankSum=-2.298;QD=6.96;ReadPosRankSum=-0.130;SB=-4.930e+02 GT:AD:DP:GQ:PL 0/1:67,62:129:99:928,0,1158 chrI 6470 . A G 885.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.967;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=0;MQRankSum=-2.467;QD=6.15;ReadPosRankSum=0.598;SB=-4.020e+02 GT:AD:DP:GQ:PL 0/1:79,65:144:99:915,0,1208 chrI 6489 . T C 1212.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.878;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=4.044;QD=8.19;ReadPosRankSum=0.781;SB=-5.090e+02 GT:AD:DP:GQ:PL 0/1:66,80:148:99:1242,0,983 chrI 6596 . A G 696.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.702;DP=105;Dels=0.00;FS=3.088;HaplotypeScore=6.4366;MLEAC=1;MLEAF=0.500;MQ=54.25;MQ0=0;MQRankSum=1.568;QD=6.63;ReadPosRankSum=-0.083;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:55,49:105:99:726,0,904 chrI 6618 . G T 581.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.504;DP=93;Dels=0.00;FS=4.518;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=0;MQRankSum=2.506;QD=6.25;ReadPosRankSum=-0.958;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:51,41:93:99:611,0,781 chrI 6663 . C T 479.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;DP=80;Dels=0.00;FS=3.297;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=52.46;MQ0=0;MQRankSum=-0.221;QD=5.99;ReadPosRankSum=-0.527;SB=-2.260e+02 GT:AD:DP:GQ:PL 0/1:43,37:80:99:509,0,669 chrI 6673 . T C 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=76;Dels=0.00;FS=4.890;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=1.498;QD=15.64;ReadPosRankSum=1.685;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1222,150,0 chrI 6694 . C T 994 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=16.57;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1027,123,0 chrI 6721 . T C 672 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=13.71;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:87:705,87,0 chrI 6722 . A T 687 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=14.31;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:720,87,0 chrI 6798 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.30;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1461,183,0 chrI 6808 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=19.24;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1649,198,0 chrI 6843 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.15;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2021,243,0 chrI 6936 . C T 276.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;DP=59;Dels=0.00;FS=7.504;HaplotypeScore=11.1830;MLEAC=1;MLEAF=0.500;MQ=48.79;MQ0=1;MQRankSum=0.638;QD=4.68;ReadPosRankSum=2.934;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:33,25:59:99:306,0,414 chrI 6942 . A C 871 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=25.1279;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=1;QD=15.02;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:904,111,0 chrI 7011 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=15.30;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1410,174,0 chrI 7014 . G C 1342 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=14.59;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1375,176,0 chrI 7792 . T G 1260.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DP=197;Dels=0.00;FS=3.395;HaplotypeScore=9.7893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.326;QD=6.40;ReadPosRankSum=0.012;SB=-5.170e+02 GT:AD:DP:GQ:PL 0/1:100,94:197:99:1290,0,1573 chrI 9043 . C A 1173.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;DP=151;Dels=0.00;FS=13.810;HaplotypeScore=12.2703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.678;QD=7.77;ReadPosRankSum=-0.806;SB=-5.770e+02 GT:AD:DP:GQ:PL 0/1:71,80:151:99:1203,0,952 chrI 9475 . T G 1525.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.073;DP=203;Dels=0.00;FS=1.739;HaplotypeScore=11.3621;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-0.780;QD=7.51;ReadPosRankSum=0.125;SB=-6.950e+02 GT:AD:DP:GQ:PL 0/1:104,99:203:99:1555,0,1679 chrI 9538 . T C 2322.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.227;DP=317;Dels=0.00;FS=3.296;HaplotypeScore=21.4924;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-1.022;QD=7.32;ReadPosRankSum=-0.172;SB=-8.740e+02 GT:AD:DP:GQ:PL 0/1:158,159:317:99:2352,0,2515 chrI 11045 . A C 2665 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.50;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2698,332,0 chrI 11107 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.19;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3105,366,0 chrI 11716 . T G 2456.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.660;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=17.5952;MLEAC=1;MLEAF=0.500;MQ=52.92;MQ0=0;MQRankSum=-0.813;QD=8.16;ReadPosRankSum=0.294;SB=-1.205e+03 GT:AD:DP:GQ:PL 0/1:144,156:301:99:2486,0,2497 chrI 11980 . G A 618.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.439;DP=673;Dels=0.00;FS=126.989;HaplotypeScore=37.5577;MLEAC=1;MLEAF=0.500;MQ=45.15;MQ0=34;MQRankSum=-14.125;QD=0.92;ReadPosRankSum=3.185;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:532,139:673:99:648,0,8913 chrI 11981 . T C 532.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.511;DP=676;Dels=0.00;FS=129.647;HaplotypeScore=38.3464;MLEAC=1;MLEAF=0.500;MQ=44.92;MQ0=35;MQRankSum=-14.027;QD=0.79;ReadPosRankSum=2.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:534,141:676:99:562,0,9245 chrI 11997 . T A 137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.454;DP=669;Dels=0.00;FS=52.094;HaplotypeScore=17.9259;MLEAC=1;MLEAF=0.500;MQ=42.32;MQ0=45;MQRankSum=-12.891;QD=0.20;ReadPosRankSum=-3.285;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:531,138:669:99:167,0,9244 chrI 12134 . A G 2149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.376;DP=561;Dels=0.00;FS=4.905;HaplotypeScore=37.7598;MLEAC=1;MLEAF=0.500;MQ=38.47;MQ0=48;MQRankSum=7.738;QD=3.83;ReadPosRankSum=-0.981;SB=-4.970e+02 GT:AD:DP:GQ:PL 0/1:379,181:561:99:2179,0,3967 chrI 12190 . A G 6773.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=491;Dels=0.00;FS=0.000;HaplotypeScore=16.5770;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=48;MQRankSum=-2.571;QD=13.79;ReadPosRankSum=2.975;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:3,487:491:99:6773,853,0 chrI 12256 . A T 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DP=95;Dels=0.00;FS=34.822;HaplotypeScore=32.6772;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=16;MQRankSum=-0.389;QD=0.60;ReadPosRankSum=-4.719;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,13:95:87:87,0,471 chrI 12326 . T C 1133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;DP=257;Dels=0.00;FS=123.415;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.55;MQ0=100;MQRankSum=0.823;QD=4.41;ReadPosRankSum=-3.967;SB=-6.930e+02 GT:AD:DP:GQ:PL 0/1:92,165:257:99:1163,0,582 chrI 12396 . T C 487 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=156;Dels=0.00;FS=14.988;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=13.48;MQ0=107;MQRankSum=-2.344;QD=3.12;ReadPosRankSum=2.833;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:3,145:156:69:520,69,0 chrI 12489 . T C 2733 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.108;DP=251;Dels=0.00;FS=11.202;HaplotypeScore=4.5164;MLEAC=2;MLEAF=1.00;MQ=24.18;MQ0=28;MQRankSum=2.483;QD=10.89;ReadPosRankSum=0.485;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:18,233:251:99:2766,334,0 chrI 12498 . A T 2608 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.5853;MLEAC=2;MLEAF=1.00;MQ=24.94;MQ0=27;MQRankSum=0.541;QD=11.85;ReadPosRankSum=1.851;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:3,217:220:99:2641,318,0 chrI 12551 . T C 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;DP=59;Dels=0.00;FS=11.307;HaplotypeScore=28.5799;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=2;MQRankSum=-3.006;QD=0.73;ReadPosRankSum=4.047;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,23:59:73:73,0,314 chrI 12553 . A G 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DP=54;Dels=0.00;FS=17.773;HaplotypeScore=26.2265;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=2;MQRankSum=-2.992;QD=1.00;ReadPosRankSum=3.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,26:54:84:84,0,290 chrI 12561 . A G 248.21 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.762;DP=49;Dels=0.00;FS=6.705;HaplotypeScore=45.5644;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=2;MQRankSum=-1.001;QD=5.07;ReadPosRankSum=0.523;SB=2.81 GT:AD:DP:GQ:PL 1/1:7,42:49:16:281,16,0 chrI 12566 . C T 328 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.849;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=19.4652;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=2;MQRankSum=0.102;QD=6.19;ReadPosRankSum=1.664;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:45:361,45,0 chrI 12594 . A T 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;DP=63;Dels=0.00;FS=24.464;HaplotypeScore=8.6040;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=2;MQRankSum=-3.502;QD=0.43;ReadPosRankSum=-1.726;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,31:63:57:57,0,271 chrI 12599 . T C 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;DP=70;Dels=0.00;FS=1.602;HaplotypeScore=16.0535;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=0;MQRankSum=2.329;QD=2.90;ReadPosRankSum=2.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,39:70:80:233,0,80 chrI 12600 . A G 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.836;DP=69;Dels=0.00;FS=1.606;HaplotypeScore=16.0535;MLEAC=1;MLEAF=0.500;MQ=23.29;MQ0=0;MQRankSum=-1.797;QD=0.67;ReadPosRankSum=-2.131;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,30:69:76:76,0,235 chrI 12601 . A G 230.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;DP=72;Dels=0.00;FS=1.578;HaplotypeScore=16.0535;MLEAC=1;MLEAF=0.500;MQ=23.56;MQ0=0;MQRankSum=3.153;QD=3.19;ReadPosRankSum=2.057;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,39:72:76:260,0,76 chrI 12606 . C T 202.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.273;DP=77;Dels=0.00;FS=13.430;HaplotypeScore=10.3122;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=0;MQRankSum=3.595;QD=2.62;ReadPosRankSum=3.945;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,28:77:99:232,0,99 chrI 12609 . A G 230.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.1032;MLEAC=1;MLEAF=0.500;MQ=23.53;MQ0=0;MQRankSum=2.522;QD=3.03;ReadPosRankSum=2.713;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,35:76:99:260,0,141 chrI 12617 . T C 190.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.122;DP=85;Dels=0.00;FS=6.051;HaplotypeScore=10.6012;MLEAC=1;MLEAF=0.500;MQ=23.76;MQ0=0;MQRankSum=3.118;QD=2.24;ReadPosRankSum=2.780;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,31:85:99:220,0,141 chrI 12618 . T C 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.633;DP=85;Dels=0.00;FS=1.500;HaplotypeScore=12.5745;MLEAC=1;MLEAF=0.500;MQ=23.76;MQ0=0;MQRankSum=2.265;QD=2.52;ReadPosRankSum=1.996;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,34:85:99:244,0,141 chrI 12619 . G A 107.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.213;DP=84;Dels=0.00;FS=1.429;HaplotypeScore=12.5745;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=0;MQRankSum=-2.201;QD=1.27;ReadPosRankSum=-0.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,48:84:99:137,0,248 chrI 12620 . T C 479 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.441;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=13.3632;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=0;MQRankSum=-0.679;QD=5.64;ReadPosRankSum=2.513;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:3,82:85:66:512,66,0 chrI 12633 . T C 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DP=93;Dels=0.00;FS=1.301;HaplotypeScore=3.8808;MLEAC=1;MLEAF=0.500;MQ=23.42;MQ0=0;MQRankSum=-1.680;QD=1.20;ReadPosRankSum=5.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,45:93:99:142,0,195 chrI 12647 . T C 143.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;DP=118;Dels=0.00;FS=5.416;HaplotypeScore=5.8277;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=0;MQRankSum=-0.649;QD=1.21;ReadPosRankSum=5.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,53:118:99:173,0,294 chrI 12648 . A G 264.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.606;DP=118;Dels=0.00;FS=5.456;HaplotypeScore=5.8277;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=0;MQRankSum=1.470;QD=2.24;ReadPosRankSum=-5.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,64:118:99:294,0,179 chrI 12649 . A G 149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.698;DP=122;Dels=0.00;FS=8.868;HaplotypeScore=5.8277;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=0;MQRankSum=0.726;QD=1.22;ReadPosRankSum=4.934;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,55:122:99:179,0,307 chrI 12657 . A G 155.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.925;DP=125;Dels=0.00;FS=17.940;HaplotypeScore=25.1913;MLEAC=1;MLEAF=0.500;MQ=24.05;MQ0=0;MQRankSum=1.966;QD=1.24;ReadPosRankSum=1.837;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,54:125:99:185,0,271 chrI 12666 . T C 150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;DP=139;Dels=0.00;FS=23.801;HaplotypeScore=35.7033;MLEAC=1;MLEAF=0.500;MQ=24.73;MQ0=0;MQRankSum=2.702;QD=1.08;ReadPosRankSum=2.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,41:139:99:180,0,248 chrI 12667 . G A 138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.968;DP=137;Dels=0.00;FS=33.211;HaplotypeScore=35.7033;MLEAC=1;MLEAF=0.500;MQ=24.83;MQ0=0;MQRankSum=-0.492;QD=1.01;ReadPosRankSum=-1.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,88:137:99:168,0,237 chrI 12668 . T C 439.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.886;DP=139;Dels=0.00;FS=4.507;HaplotypeScore=37.2763;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;MQRankSum=-0.689;QD=3.16;ReadPosRankSum=0.569;SB=-1.465e+00 GT:AD:DP:GQ:PL 1/1:9,130:139:7:471,7,0 chrI 12681 . T C 166.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.722;DP=177;Dels=0.00;FS=59.920;HaplotypeScore=73.6977;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=1;MQRankSum=0.233;QD=0.94;ReadPosRankSum=6.629;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:106,70:177:99:196,0,279 chrI 12690 . A T 90.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DP=185;Dels=0.00;FS=18.003;HaplotypeScore=153.3556;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=1;MQRankSum=-3.919;QD=0.49;ReadPosRankSum=2.880;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:88,97:185:99:120,0,478 chrI 12695 . T C 553 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-5.061;DP=191;Dels=0.00;FS=1.839;HaplotypeScore=132.4226;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=1;MQRankSum=-0.217;QD=2.90;ReadPosRankSum=3.107;SB=-1.600e+01 GT:AD:DP:GQ:PL 1/1:39,151:191:39:586,39,0 chrI 12697 . A G 599 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.840;DP=195;Dels=0.00;FS=12.783;HaplotypeScore=139.8335;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=1;MQRankSum=1.323;QD=3.07;ReadPosRankSum=2.138;SB=-1.900e+01 GT:AD:DP:GQ:PL 1/1:39,156:195:43:632,43,0 chrI 12702 . C T 410.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.840;DP=229;Dels=0.00;FS=41.011;HaplotypeScore=149.1341;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=2;MQRankSum=4.844;QD=1.79;ReadPosRankSum=0.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,87:229:99:440,0,139 chrI 12705 . A G 714.20 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;DP=233;Dels=0.00;FS=23.290;HaplotypeScore=413.5654;MLEAC=1;MLEAF=0.500;MQ=23.01;MQ0=2;MQRankSum=1.834;QD=3.07;ReadPosRankSum=2.534;SB=-1.920e+01 GT:AD:DP:GQ:PL 0/1:56,177:233:2:743,0,2 chrI 12713 . T C 583.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;DP=317;Dels=0.00;FS=5.849;HaplotypeScore=80.5062;MLEAC=1;MLEAF=0.500;MQ=23.58;MQ0=2;MQRankSum=-1.947;QD=1.84;ReadPosRankSum=7.021;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:171,145:317:99:613,0,395 chrI 12714 . T C 795.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;DP=343;Dels=0.00;FS=11.141;HaplotypeScore=93.9138;MLEAC=1;MLEAF=0.500;MQ=24.12;MQ0=2;MQRankSum=-2.011;QD=2.32;ReadPosRankSum=4.879;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:158,184:343:99:825,0,210 chrI 12715 . G A 325.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.642;DP=372;Dels=0.00;FS=11.598;HaplotypeScore=96.8573;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=2;MQRankSum=1.922;QD=0.87;ReadPosRankSum=0.352;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:234,132:372:99:355,0,1010 chrI 12729 . T C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.423;DP=435;Dels=0.00;FS=8.882;HaplotypeScore=52.1839;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=3;MQRankSum=0.142;QD=0.08;ReadPosRankSum=0.035;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:318,113:435:66:66,0,2688 chrI 12743 . T C 411.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.194;DP=413;Dels=0.00;FS=32.586;HaplotypeScore=103.8816;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=1;MQRankSum=0.069;QD=1.00;ReadPosRankSum=-0.047;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:256,156:413:99:441,0,2420 chrI 12744 . A G 1882.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.736;DP=412;Dels=0.00;FS=30.070;HaplotypeScore=103.8816;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=1;MQRankSum=0.981;QD=4.57;ReadPosRankSum=0.728;SB=-7.890e+02 GT:AD:DP:GQ:PL 0/1:162,250:412:99:1912,0,596 chrI 12745 . A G 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.031;DP=411;Dels=0.00;FS=28.518;HaplotypeScore=103.0495;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=1;MQRankSum=0.130;QD=1.06;ReadPosRankSum=0.022;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:254,157:411:99:466,0,2470 chrI 12753 . A G 535.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.522;DP=412;Dels=0.00;FS=15.988;HaplotypeScore=350.3395;MLEAC=1;MLEAF=0.500;MQ=24.89;MQ0=1;MQRankSum=1.840;QD=1.30;ReadPosRankSum=-1.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:243,166:412:99:565,0,2366 chrI 12763 . G A 2501.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.686;DP=393;Dels=0.00;FS=58.678;HaplotypeScore=351.8946;MLEAC=1;MLEAF=0.500;MQ=25.70;MQ0=0;MQRankSum=1.558;QD=6.36;ReadPosRankSum=7.011;SB=-7.650e+02 GT:AD:DP:GQ:PL 0/1:119,274:393:99:2531,0,432 chrI 12764 . T C 2928.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970;DP=395;Dels=0.00;FS=2.254;HaplotypeScore=216.7114;MLEAC=1;MLEAF=0.500;MQ=25.69;MQ0=0;MQRankSum=-5.894;QD=7.41;ReadPosRankSum=7.230;SB=-7.390e+02 GT:AD:DP:GQ:PL 0/1:48,347:395:62:2958,0,62 chrI 12769 . G A 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.732;DP=419;Dels=0.00;FS=1.341;HaplotypeScore=319.3272;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=0;MQRankSum=6.354;QD=0.24;ReadPosRankSum=-3.003;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:370,49:419:99:129,0,3230 chrI 12777 . T C 1777.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.767;DP=448;Dels=0.00;FS=0.800;HaplotypeScore=98.1986;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=0;MQRankSum=1.391;QD=3.97;ReadPosRankSum=-0.143;SB=-7.770e+02 GT:AD:DP:GQ:PL 0/1:282,165:448:99:1807,0,1787 chrI 12791 . C T 190.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.511;DP=451;Dels=0.00;FS=16.701;HaplotypeScore=151.1237;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=0;MQRankSum=4.624;QD=0.42;ReadPosRankSum=7.275;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:358,93:451:99:220,0,4061 chrI 12793 . G A 365.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.121;DP=457;Dels=0.00;FS=10.058;HaplotypeScore=151.9124;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=5.788;QD=0.80;ReadPosRankSum=7.898;SB=-3.480e+02 GT:AD:DP:GQ:PL 0/1:359,98:457:99:395,0,4108 chrI 12798 . C T 829.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.022;DP=445;Dels=0.00;FS=32.137;HaplotypeScore=115.1257;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=3;MQRankSum=7.616;QD=1.86;ReadPosRankSum=2.843;SB=-4.290e+02 GT:AD:DP:GQ:PL 0/1:307,138:445:99:859,0,3478 chrI 12810 . T C 1339.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.658;DP=318;Dels=0.00;FS=97.643;HaplotypeScore=139.5164;MLEAC=1;MLEAF=0.500;MQ=29.39;MQ0=3;MQRankSum=-5.665;QD=4.21;ReadPosRankSum=-1.180;SB=-5.150e+02 GT:AD:DP:GQ:PL 0/1:148,168:318:99:1369,0,1140 chrI 12814 . G C 1739.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;DP=341;Dels=0.00;FS=90.855;HaplotypeScore=110.4343;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=3;MQRankSum=-7.497;QD=5.10;ReadPosRankSum=-1.886;SB=-8.670e+02 GT:AD:DP:GQ:PL 0/1:107,231:341:99:1769,0,1001 chrI 12821 . T C 1998.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=373;Dels=0.00;FS=110.033;HaplotypeScore=52.6305;MLEAC=1;MLEAF=0.500;MQ=29.48;MQ0=3;MQRankSum=-7.617;QD=5.36;ReadPosRankSum=-1.205;SB=-7.420e+02 GT:AD:DP:GQ:PL 0/1:111,262:373:99:2028,0,1131 chrI 12840 . C G 333.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.025;DP=397;Dels=0.00;FS=15.436;HaplotypeScore=31.0668;MLEAC=1;MLEAF=0.500;MQ=31.28;MQ0=4;MQRankSum=-1.197;QD=0.84;ReadPosRankSum=-3.678;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:318,77:397:99:363,0,4671 chrI 12859 . G A 677.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;DP=490;Dels=0.00;FS=0.907;HaplotypeScore=27.5625;MLEAC=1;MLEAF=0.500;MQ=30.76;MQ0=4;MQRankSum=1.690;QD=1.38;ReadPosRankSum=-1.720;SB=-2.140e+02 GT:AD:DP:GQ:PL 0/1:397,90:490:99:707,0,5998 chrI 12953 . C A 2625.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.258;DP=414;Dels=0.00;FS=9.592;HaplotypeScore=37.2603;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=14;MQRankSum=-8.106;QD=6.34;ReadPosRankSum=0.004;SB=-1.418e+03 GT:AD:DP:GQ:PL 0/1:140,270:414:99:2655,0,1774 chrI 12964 . A G 1775.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;DP=364;Dels=0.00;FS=1.387;HaplotypeScore=19.3968;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=14;MQRankSum=-7.299;QD=4.88;ReadPosRankSum=-0.501;SB=-9.440e+02 GT:AD:DP:GQ:PL 0/1:147,214:363:99:1805,0,1944 chrI 13013 . G T 1460.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.402;DP=261;Dels=0.00;FS=9.318;HaplotypeScore=88.8444;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=17;MQRankSum=2.143;QD=5.59;ReadPosRankSum=-0.202;SB=-2.970e+02 GT:AD:DP:GQ:PL 0/1:85,129:261:99:1490,0,579 chrI 13051 . G A 462.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.620;DP=306;Dels=0.01;FS=44.653;HaplotypeScore=252.8476;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=23;MQRankSum=0.713;QD=1.51;ReadPosRankSum=-3.568;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:212,90:304:99:492,0,1936 chrI 13099 . T A 604.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.332;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=126.1565;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=33;MQRankSum=1.736;QD=2.24;ReadPosRankSum=-5.513;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,46:270:99:634,0,1728 chrI 13111 . A G 237.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.565;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=22.2703;MLEAC=1;MLEAF=0.500;MQ=24.66;MQ0=35;MQRankSum=1.568;QD=0.93;ReadPosRankSum=-4.247;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,25:254:99:267,0,1589 chrI 13113 . T G 207.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.934;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=20.6929;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=35;MQRankSum=2.723;QD=0.84;ReadPosRankSum=-5.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:221,25:246:99:237,0,1391 chrI 13120 . G A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.9699;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=33;MQRankSum=2.125;QD=0.22;ReadPosRankSum=-5.818;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:198,18:216:78:78,0,1376 chrI 13122 . G A 1267.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=32;MQRankSum=-1.088;QD=6.40;ReadPosRankSum=6.744;SB=-3.019e+00 GT:AD:DP:GQ:PL 0/1:31,167:198:30:1297,0,30 chrI 13171 . T C 176.01 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=21.51;MQ0=13;QD=2.23;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,76:79:27:209,27,0 chrI 13174 . T G 163.03 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=19.57;MQ0=13;QD=2.51;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,62:65:24:196,24,0 chrI 13194 . T G 87.26 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.90;MQ0=6;QD=2.13;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:15:120,15,0 chrI 13201 . T C 65.51 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.83;MQ0=5;QD=1.87;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:98,12,0 chrI 24401 . G C 1529 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=49;QD=8.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:1562,186,0 chrI 24412 . G A 1570 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.668;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=49;MQRankSum=4.107;QD=8.01;ReadPosRankSum=2.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,190:196:99:1603,192,0 chrI 24413 . T C 1493 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=18.88;MQ0=50;MQRankSum=4.252;QD=7.39;ReadPosRankSum=4.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,190:202:99:1526,191,0 chrI 24431 . A G 1389 filter AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=51;QD=7.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:1422,174,0 chrI 24491 . T C 517 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5621;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=8;MQRankSum=-1.815;QD=3.17;ReadPosRankSum=2.385;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,161:163:72:550,72,0 chrI 24514 . C T 1078 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2508;MLEAC=2;MLEAF=1.00;MQ=20.93;MQ0=9;QD=5.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:1111,138,0 chrI 24550 . T C 2874 filter AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=31;QD=8.76;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,328:328:99:2907,362,0 chrI 24603 . A G 326.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.878;DP=465;Dels=0.00;FS=257.411;HaplotypeScore=37.7474;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=90;MQRankSum=-3.703;QD=0.70;ReadPosRankSum=-2.463;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:294,166:465:99:356,0,3451 chrI 24643 . G A 1827.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.027;DP=440;Dels=0.00;FS=93.289;HaplotypeScore=36.2154;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=75;MQRankSum=1.207;QD=4.15;ReadPosRankSum=1.512;SB=-1.031e+03 GT:AD:DP:GQ:PL 0/1:258,182:440:99:1857,0,2845 chrI 24659 . C T 958.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.115;DP=481;Dels=0.00;FS=16.260;HaplotypeScore=25.4225;MLEAC=1;MLEAF=0.500;MQ=30.48;MQ0=67;MQRankSum=-3.274;QD=1.99;ReadPosRankSum=-0.413;SB=-4.250e+02 GT:AD:DP:GQ:PL 0/1:327,151:481:99:988,0,4288 chrI 24749 . T C 364.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.627;DP=806;Dels=0.00;FS=7.342;HaplotypeScore=43.5186;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=57;MQRankSum=-1.943;QD=0.45;ReadPosRankSum=2.984;SB=-1.890e+02 GT:AD:DP:GQ:PL 0/1:676,123:806:99:394,0,10025 chrI 24762 . C T 1348.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.240;DP=829;Dels=0.00;FS=78.177;HaplotypeScore=57.3126;MLEAC=1;MLEAF=0.500;MQ=30.74;MQ0=67;MQRankSum=-0.337;QD=1.63;ReadPosRankSum=1.943;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:635,189:829:99:1378,0,7809 chrI 24779 . T C 1524.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.943;DP=755;Dels=0.00;FS=11.168;HaplotypeScore=38.2316;MLEAC=1;MLEAF=0.500;MQ=31.10;MQ0=96;MQRankSum=-8.903;QD=2.02;ReadPosRankSum=-3.973;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/1:453,294:755:99:1554,0,6172 chrI 24814 . G A 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.752;DP=586;Dels=0.00;FS=124.473;HaplotypeScore=25.7947;MLEAC=1;MLEAF=0.500;MQ=32.52;MQ0=151;MQRankSum=-7.005;QD=0.33;ReadPosRankSum=2.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:449,135:586:99:223,0,5080 chrI 24816 . A G 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.360;DP=589;Dels=0.00;FS=126.382;HaplotypeScore=30.5702;MLEAC=1;MLEAF=0.500;MQ=32.80;MQ0=151;MQRankSum=-6.857;QD=0.27;ReadPosRankSum=2.568;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:455,130:589:99:187,0,5047 chrI 24861 . A G 1910.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.160;DP=556;Dels=0.00;FS=274.827;HaplotypeScore=49.0933;MLEAC=1;MLEAF=0.500;MQ=39.86;MQ0=138;MQRankSum=-17.122;QD=3.44;ReadPosRankSum=2.488;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:238,316:556:99:1940,0,3880 chrI 24937 . A G 2928.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-15.129;DP=716;Dels=0.00;FS=557.851;HaplotypeScore=206.4082;MLEAC=1;MLEAF=0.500;MQ=39.81;MQ0=21;MQRankSum=-14.073;QD=4.09;ReadPosRankSum=5.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:396,320:716:99:2958,0,5056 chrI 24942 . T C 1642.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.527;DP=719;Dels=0.00;FS=267.723;HaplotypeScore=188.8752;MLEAC=1;MLEAF=0.500;MQ=40.01;MQ0=25;MQRankSum=-11.425;QD=2.28;ReadPosRankSum=2.261;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:479,236:719:99:1672,0,6167 chrI 24951 . A T 2859.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.411;DP=711;Dels=0.00;FS=223.808;HaplotypeScore=242.3039;MLEAC=1;MLEAF=0.500;MQ=39.13;MQ0=36;MQRankSum=-19.367;QD=4.02;ReadPosRankSum=-0.991;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:311,400:711:99:2889,0,4782 chrI 24956 . T C 2300.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;DP=685;Dels=0.00;FS=374.716;HaplotypeScore=255.5006;MLEAC=1;MLEAF=0.500;MQ=38.72;MQ0=43;MQRankSum=-16.412;QD=3.36;ReadPosRankSum=1.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:370,313:685:99:2330,0,4541 chrI 24958 . A G 2057.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.358;DP=690;Dels=0.00;FS=307.715;HaplotypeScore=254.5457;MLEAC=1;MLEAF=0.500;MQ=38.37;MQ0=50;MQRankSum=-16.020;QD=2.98;ReadPosRankSum=2.266;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:382,307:690:99:2087,0,5055 chrI 24966 . A G 1792.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.882;DP=688;Dels=0.00;FS=323.939;HaplotypeScore=372.0159;MLEAC=1;MLEAF=0.500;MQ=37.76;MQ0=64;MQRankSum=-18.905;QD=2.60;ReadPosRankSum=1.607;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:334,349:688:99:1822,0,5239 chrI 24976 . G A 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.704;DP=658;Dels=0.00;FS=26.107;HaplotypeScore=375.8137;MLEAC=1;MLEAF=0.500;MQ=37.53;MQ0=66;MQRankSum=-5.337;QD=0.51;ReadPosRankSum=-3.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:555,99:658:99:367,0,6660 chrI 25005 . C G 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.514;DP=501;Dels=0.00;FS=0.000;HaplotypeScore=22.2413;MLEAC=1;MLEAF=0.500;MQ=39.29;MQ0=82;MQRankSum=-7.045;QD=0.20;ReadPosRankSum=5.790;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:435,62:501:99:131,0,5287 chrI 25054 . G A 515.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.995;DP=333;Dels=0.02;FS=2.812;HaplotypeScore=25.6667;MLEAC=1;MLEAF=0.500;MQ=42.52;MQ0=44;MQRankSum=-13.044;QD=1.55;ReadPosRankSum=-6.919;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:196,129:325:99:545,0,3464 chrI 25340 . C A 2680 filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.6384;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=25;QD=13.89;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,192:193:99:2713,332,0 chrI 25351 . A G 183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.967;DP=182;Dels=0.00;FS=14.755;HaplotypeScore=12.0331;MLEAC=1;MLEAF=0.500;MQ=31.72;MQ0=23;MQRankSum=-5.414;QD=1.01;ReadPosRankSum=-0.192;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,38:182:99:213,0,2136 chrI 25374 . A T 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.848;DP=228;Dels=0.00;FS=21.244;HaplotypeScore=24.6703;MLEAC=1;MLEAF=0.500;MQ=31.70;MQ0=16;MQRankSum=-6.017;QD=0.33;ReadPosRankSum=7.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,40:228:99:105,0,3215 chrI 25488 . G A 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200;DP=105;Dels=0.00;FS=73.270;HaplotypeScore=21.5349;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=0;MQRankSum=4.354;QD=10.17;ReadPosRankSum=-4.261;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:29,76:105:99:1101,119,0 chrI 25497 . G A 648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;DP=83;Dels=0.00;FS=51.999;HaplotypeScore=16.5186;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=0;MQRankSum=2.018;QD=7.81;ReadPosRankSum=-2.008;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:28,55:83:65:681,65,0 chrI 25506 . C T 402 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=23.8309;MLEAC=2;MLEAF=1.00;MQ=19.84;MQ0=0;MQRankSum=-2.395;QD=6.00;ReadPosRankSum=-0.040;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:4,63:67:54:435,54,0 chrI 25509 . G A 247.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.297;DP=64;Dels=0.00;FS=19.177;HaplotypeScore=15.3360;MLEAC=2;MLEAF=1.00;MQ=19.30;MQ0=0;MQRankSum=0.947;QD=3.86;ReadPosRankSum=1.014;SB=-1.272e+02 GT:AD:DP:GQ:PL 1/1:32,32:64:17:280,17,0 chrI 25512 . T G 117.20 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.878;DP=57;Dels=0.00;FS=2.973;HaplotypeScore=15.3360;MLEAC=1;MLEAF=0.500;MQ=19.65;MQ0=0;MQRankSum=-0.201;QD=2.06;ReadPosRankSum=2.744;SB=-4.420e+01 GT:AD:DP:GQ:PL 0/1:19,27:57:2:146,0,2 chrI 25515 . A G 134.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.114;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=15.3360;MLEAC=2;MLEAF=1.00;MQ=19.80;MQ0=0;MQRankSum=0.501;QD=2.44;ReadPosRankSum=4.489;SB=-1.127e+00 GT:AD:DP:GQ:PL 1/1:31,24:55:1:163,1,0 chrI 25536 . G A 435 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=7.6627;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=3;QD=12.08;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,35:36:57:468,57,0 chrI 25542 . A G 547 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=3;QD=12.43;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:72:580,72,0 chrI 25560 . G A 921 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.544;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9367;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=3;MQRankSum=1.153;QD=14.62;ReadPosRankSum=2.035;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,60:63:99:954,114,0 chrI 25584 . A G 1537 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.7872;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=3;QD=15.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1570,197,0 chrI 25614 . T A 2040 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.065;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.3262;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;MQRankSum=1.138;QD=16.45;ReadPosRankSum=2.065;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2073,252,0 chrI 25617 . A C 1861 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.096;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.2461;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=0.641;QD=14.89;ReadPosRankSum=1.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,119:125:99:1894,242,0 chrI 25620 . G A 1956 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3641;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;MQRankSum=-0.057;QD=15.90;ReadPosRankSum=0.540;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:1989,240,0 chrI 25623 . G A 1985 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.5115;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;MQRankSum=2.397;QD=16.01;ReadPosRankSum=1.549;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2018,240,0 chrI 25632 . A G 1818 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.468;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=1.292;QD=15.41;ReadPosRankSum=-1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1851,233,0 chrI 25653 . G T 1334 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=14.7429;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=15.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1367,168,0 chrI 25654 . C A 1395 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=14.7429;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=16.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1428,174,0 chrI 25669 . C G 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=0.651;QD=8.19;ReadPosRankSum=1.519;SB=-3.166e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:164,21,0 chrI 25671 . A T 137.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.302;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=0.868;QD=8.57;ReadPosRankSum=1.519;SB=-3.166e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:170,21,0 chrI 25674 . T A 135.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=0.868;QD=8.44;ReadPosRankSum=1.519;SB=-3.166e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:168,21,0 chrI 25677 . A T 136.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;QD=8.50;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:16:21:169,21,0 chrI 25681 . C T 141.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.651;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=0.651;QD=8.82;ReadPosRankSum=1.519;SB=-3.166e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:174,21,0 chrI 25683 . G A 143.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=-0.434;QD=8.94;ReadPosRankSum=1.519;SB=-5.321e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:176,21,0 chrI 25685 . T C 136.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=-1.085;QD=8.50;ReadPosRankSum=1.519;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:169,21,0 chrI 25686 . G A 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=9.27;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:172,21,0 chrI 25694 . C T 136.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.50;SB=-7.483e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:169,21,0 chrI 25701 . G A 133.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=1;MQRankSum=0.919;QD=7.39;ReadPosRankSum=-0.306;SB=-6.405e-02 GT:AD:DP:GQ:PL 1/1:2,16:18:21:166,21,0 chrI 25710 . A C 63.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=1;MQRankSum=0.751;QD=6.35;ReadPosRankSum=0.751;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:2,8:10:12:96,12,0 chrI 25712 . C A 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=2;QD=6.35;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:96,12,0 chrI 25716 . G A 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=2;MQRankSum=0.747;QD=3.60;ReadPosRankSum=-0.747;SB=3.48 GT:AD:DP:GQ:PL 1/1:1,9:10:9:68,9,0 chrI 26970 . G A 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=20.9502;MLEAC=2;MLEAF=1.00;MQ=17.56;MQ0=13;MQRankSum=0.372;QD=1.21;ReadPosRankSum=2.188;SB=2.03 GT:AD:DP:GQ:PL 1/1:18,16:34:9:73,9,0 chrI 26973 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=17.2697;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=15;QD=0.94;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:14,20:35:9:65,9,0 chrI 26974 . A G 59.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=17.2697;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=15;MQRankSum=-0.331;QD=1.70;ReadPosRankSum=1.843;SB=2.49 GT:AD:DP:GQ:PL 1/1:19,16:35:12:92,12,0 chrI 26979 . G A 29.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=13.3727;MLEAC=1;MLEAF=0.500;MQ=17.51;MQ0=15;MQRankSum=0.224;QD=0.81;ReadPosRankSum=-0.134;SB=-2.157e-01 GT:AD:DP:GQ:PL 0/1:19,17:36:10:59,0,10 chrI 26981 . T C 58.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=14.3461;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=15;MQRankSum=-0.630;QD=1.58;ReadPosRankSum=1.576;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:16,21:37:12:91,12,0 chrI 26983 . T G 59.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=23.3153;MLEAC=2;MLEAF=1.00;MQ=19.34;MQ0=16;MQRankSum=-0.843;QD=1.38;ReadPosRankSum=3.402;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:21,22:43:12:92,12,0 chrI 27027 . A T 2888 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=12;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,306:307:99:2921,356,0 chrI 27031 . C T 1530.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.962;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=10;MQRankSum=1.586;QD=4.66;ReadPosRankSum=-0.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,190:328:99:1560,0,858 chrI 27035 . T C 3132 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=9;QD=9.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:3165,404,0 chrI 27036 . G A 3297.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=9;QD=10.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:3297,404,0 chrI 27044 . C T 3233.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=423;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=8;QD=7.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,423:423:99:3266,398,0 chrI 27051 . G A 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.297;DP=473;Dels=0.00;FS=0.000;HaplotypeScore=83.0564;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=7;MQRankSum=1.828;QD=0.25;ReadPosRankSum=-0.757;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:389,84:473:99:150,0,2210 chrI 27060 . A C,T 3424.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=499;Dels=0.00;FS=0.000;HaplotypeScore=3.4267;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.57;MQ0=1;QD=6.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:1,193,305:499:99:3424,2076,1882,1348,0,1060 chrI 27062 . C A 1212.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.262;DP=507;Dels=0.00;FS=0.000;HaplotypeScore=79.1834;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=1.243;QD=2.39;ReadPosRankSum=0.230;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:314,191:505:99:1242,0,1880 chrI 27063 . G A 1962.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;DP=517;Dels=0.00;FS=0.000;HaplotypeScore=80.1412;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=0;MQRankSum=0.302;QD=3.79;ReadPosRankSum=1.121;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:205,312:517:99:1992,0,1159 chrI 27066 . G A 1149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.390;DP=525;Dels=0.00;FS=0.000;HaplotypeScore=83.9946;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=0;MQRankSum=0.421;QD=2.19;ReadPosRankSum=-0.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:321,204:525:99:1179,0,1872 chrI 27071 . T C 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.446;DP=520;Dels=0.00;FS=0.000;HaplotypeScore=167.0531;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=0;MQRankSum=4.095;QD=0.13;ReadPosRankSum=2.138;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:439,80:519:97:97,0,3071 chrI 27072 . A G 1868.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=515;Dels=0.00;FS=0.000;HaplotypeScore=177.3991;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=3.122;QD=3.63;ReadPosRankSum=0.810;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,312:515:99:1898,0,1018 chrI 27075 . G A 1921.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.417;DP=513;Dels=0.00;FS=0.000;HaplotypeScore=168.0169;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=2.102;QD=3.74;ReadPosRankSum=0.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:202,311:513:99:1951,0,1097 chrI 27080 . C T 1774.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.580;DP=481;Dels=0.00;FS=0.000;HaplotypeScore=163.1950;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=1.434;QD=3.69;ReadPosRankSum=0.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,291:481:99:1804,0,1132 chrI 27081 . G A,T 1783.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=5.020;DP=477;Dels=0.00;FS=0.000;HaplotypeScore=77.8391;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.86;MQ0=0;MQRankSum=-1.352;QD=3.74;ReadPosRankSum=-0.787;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:87,291,99:477:99:1843,326,635,1059,0,1476 chrI 27084 . G A 1433.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;DP=490;Dels=0.00;FS=0.000;HaplotypeScore=88.3291;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=1.735;QD=2.92;ReadPosRankSum=-0.547;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,305:490:99:1463,0,1140 chrI 27089 . T A 1084.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.708;DP=490;Dels=0.00;FS=0.000;HaplotypeScore=86.6906;MLEAC=1;MLEAF=0.500;MQ=28.92;MQ0=0;MQRankSum=-1.406;QD=2.21;ReadPosRankSum=1.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:309,180:490:99:1114,0,1820 chrI 27090 . T C 1448.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;DP=483;Dels=0.00;FS=0.000;HaplotypeScore=87.6772;MLEAC=1;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=0.049;QD=3.00;ReadPosRankSum=0.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,296:483:99:1478,0,1165 chrI 27093 . A G 991.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.330;DP=485;Dels=0.00;FS=0.000;HaplotypeScore=6.2181;MLEAC=1;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=-0.603;QD=2.04;ReadPosRankSum=0.737;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:305,180:485:99:1021,0,1592 chrI 27099 . T A,C 2608.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.954;DP=457;Dels=0.00;FS=0.000;HaplotypeScore=7.7175;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.92;MQ0=0;MQRankSum=-0.879;QD=5.71;ReadPosRankSum=2.985;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:3,172,282:457:99:2668,1462,1298,1206,0,999 chrI 27105 . A G 1159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.554;DP=438;Dels=0.00;FS=0.000;HaplotypeScore=6.8943;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=-1.633;QD=2.65;ReadPosRankSum=-0.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,269:438:99:1189,0,935 chrI 27109 . A G 825.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.858;DP=431;Dels=0.00;FS=0.000;HaplotypeScore=7.8521;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=0.592;QD=1.91;ReadPosRankSum=1.264;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:272,159:431:99:855,0,1226 chrI 27126 . T C 1560 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.481;DP=313;Dels=0.00;FS=24.955;HaplotypeScore=3.9011;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=1.666;QD=4.98;ReadPosRankSum=0.481;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,312:313:99:1593,200,0 chrI 27129 . C A,G 1348.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=2.8507;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.59;MQ0=0;QD=4.81;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/2:0,47,233:280:98:1408,1146,1110,262,0,98 chrI 27141 . G T 1524 filter AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=6.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:1557,186,0 chrI 27151 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=6.41;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1155,144,0 chrI 27164 . A G 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.102;DP=162;Dels=0.00;FS=55.035;HaplotypeScore=10.6705;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=0;MQRankSum=0.296;QD=0.20;ReadPosRankSum=-4.808;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:127,34:162:62:62,0,854 chrI 27173 . G A 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.804;DP=158;Dels=0.00;FS=104.966;HaplotypeScore=66.4209;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=0;MQRankSum=0.053;QD=0.62;ReadPosRankSum=-2.006;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,22:158:99:128,0,1038 chrI 27178 . G T 877.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;DP=150;Dels=0.00;FS=11.575;HaplotypeScore=90.1178;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=0;MQRankSum=5.002;QD=5.85;ReadPosRankSum=0.815;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/1:65,85:150:99:907,0,406 chrI 27183 . G A 988.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.337;DP=157;Dels=0.00;FS=115.524;HaplotypeScore=163.7305;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=0;MQRankSum=-2.215;QD=6.29;ReadPosRankSum=2.818;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:38,118:157:99:1018,0,428 chrI 27186 . T C 1012.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;DP=162;Dels=0.00;FS=89.836;HaplotypeScore=226.3977;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=0;MQRankSum=-1.823;QD=6.25;ReadPosRankSum=3.587;SB=-3.950e+02 GT:AD:DP:GQ:PL 0/1:47,115:162:99:1042,0,642 chrI 27188 . G A 1232.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.792;DP=174;Dels=0.00;FS=78.605;HaplotypeScore=262.0151;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=0;MQRankSum=-1.136;QD=7.08;ReadPosRankSum=2.107;SB=-5.690e+02 GT:AD:DP:GQ:PL 0/1:49,123:174:99:1262,0,673 chrI 27192 . G A 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.488;DP=213;Dels=0.00;FS=140.559;HaplotypeScore=256.3519;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=0;MQRankSum=6.202;QD=0.26;ReadPosRankSum=2.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,44:213:86:86,0,2196 chrI 27195 . T G 1254.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.230;DP=247;Dels=0.00;FS=28.596;HaplotypeScore=221.1560;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=0;MQRankSum=-3.906;QD=5.08;ReadPosRankSum=-0.668;SB=-4.830e+02 GT:AD:DP:GQ:PL 0/1:124,123:247:99:1284,0,1340 chrI 27196 . A T 946.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;DP=256;Dels=0.00;FS=13.721;HaplotypeScore=211.2788;MLEAC=1;MLEAF=0.500;MQ=26.54;MQ0=0;MQRankSum=3.469;QD=3.70;ReadPosRankSum=-0.527;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:175,81:256:99:976,0,1837 chrI 27210 . A G 2867.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.175;DP=390;Dels=0.00;FS=7.601;HaplotypeScore=229.2406;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=0;MQRankSum=-1.509;QD=7.35;ReadPosRankSum=-1.795;SB=-1.107e+03 GT:AD:DP:GQ:PL 0/1:158,222:390:99:2897,0,2172 chrI 27302 . A T 4996.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.488;DP=863;DS;Dels=0.00;FS=10.956;HaplotypeScore=54.1772;MLEAC=1;MLEAF=0.500;MQ=35.15;MQ0=0;MQRankSum=-4.736;QD=5.79;ReadPosRankSum=2.568;SB=-2.147e+03 GT:AD:DP:GQ:PL 0/1:523,340:863:99:4996,0,8496 chrI 27356 . T C 979.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.778;DP=424;DS;Dels=0.00;FS=17.434;HaplotypeScore=243.3820;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=4;MQRankSum=-10.544;QD=2.31;ReadPosRankSum=5.279;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:325,93:424:99:1009,0,4560 chrI 27357 . A G 7141.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.745;DP=417;DS;Dels=0.00;FS=0.000;HaplotypeScore=238.6499;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=4;MQRankSum=-0.721;QD=17.12;ReadPosRankSum=2.638;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:3,414:417:99:7141,894,0 chrI 27370 . G A 1360.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.942;DP=407;Dels=0.00;FS=4.988;HaplotypeScore=286.7812;MLEAC=1;MLEAF=0.500;MQ=31.81;MQ0=5;MQRankSum=-12.282;QD=3.34;ReadPosRankSum=0.828;SB=-6.600e+02 GT:AD:DP:GQ:PL 0/1:219,187:407:99:1390,0,3362 chrI 27376 . C G 2210.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.917;DP=430;Dels=0.00;FS=17.105;HaplotypeScore=266.2505;MLEAC=1;MLEAF=0.500;MQ=31.31;MQ0=5;MQRankSum=12.410;QD=5.14;ReadPosRankSum=1.766;SB=-9.340e+02 GT:AD:DP:GQ:PL 0/1:217,139:430:99:2240,0,1537 chrI 27380 . T G 978.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.003;DP=420;Dels=0.00;FS=34.315;HaplotypeScore=332.7444;MLEAC=1;MLEAF=0.500;MQ=31.02;MQ0=5;MQRankSum=-10.289;QD=2.33;ReadPosRankSum=-1.026;SB=-4.580e+02 GT:AD:DP:GQ:PL 0/1:206,108:420:99:1008,0,3062 chrI 27390 . G A 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;DP=446;Dels=0.00;FS=84.419;HaplotypeScore=224.0624;MLEAC=1;MLEAF=0.500;MQ=29.83;MQ0=5;MQRankSum=2.306;QD=0.05;ReadPosRankSum=2.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:379,67:446:52:52,0,4162 chrI 27392 . T C 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200;DP=436;Dels=0.00;FS=33.844;HaplotypeScore=182.8064;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=5;MQRankSum=0.563;QD=0.47;ReadPosRankSum=2.352;SB=-4.860e+02 GT:AD:DP:GQ:PL 0/1:290,146:436:99:233,0,3671 chrI 27398 . T C 490.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DP=443;Dels=0.00;FS=19.219;HaplotypeScore=289.3035;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=6;MQRankSum=0.400;QD=1.11;ReadPosRankSum=2.349;SB=-8.620e+02 GT:AD:DP:GQ:PL 0/1:272,171:443:99:520,0,3208 chrI 27402 . G T 1154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.511;DP=436;Dels=0.00;FS=89.046;HaplotypeScore=345.3672;MLEAC=1;MLEAF=0.500;MQ=28.01;MQ0=6;MQRankSum=3.487;QD=2.65;ReadPosRankSum=5.157;SB=-1.365e+03 GT:AD:DP:GQ:PL 0/1:191,241:436:99:1184,0,2104 chrI 27408 . G T 1069.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.105;DP=463;Dels=0.00;FS=96.626;HaplotypeScore=411.6374;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=6;MQRankSum=4.448;QD=2.31;ReadPosRankSum=4.726;SB=-1.486e+03 GT:AD:DP:GQ:PL 0/1:202,207:463:99:1099,0,1599 chrI 27420 . G A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;DP=535;Dels=0.00;FS=34.085;HaplotypeScore=43.4769;MLEAC=1;MLEAF=0.500;MQ=29.94;MQ0=6;MQRankSum=3.182;QD=0.03;ReadPosRankSum=-0.600;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:450,81:535:46:46,0,3071 chrI 27423 . G T 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.933;DP=560;Dels=0.00;FS=35.543;HaplotypeScore=266.3675;MLEAC=1;MLEAF=0.500;MQ=30.96;MQ0=6;MQRankSum=2.861;QD=0.10;ReadPosRankSum=-1.716;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:468,89:560:86:86,0,3453 chrI 27432 . T C 2098.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.479;DP=582;Dels=0.00;FS=5.668;HaplotypeScore=92.1677;MLEAC=1;MLEAF=0.500;MQ=33.07;MQ0=5;MQRankSum=-0.721;QD=3.60;ReadPosRankSum=2.490;SB=-2.159e+03 GT:AD:DP:GQ:PL 0/1:302,279:582:99:2128,0,2352 chrI 27444 . A G 2483.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.070;DP=658;Dels=0.00;FS=0.599;HaplotypeScore=9.8103;MLEAC=1;MLEAF=0.500;MQ=34.55;MQ0=3;MQRankSum=-1.994;QD=3.77;ReadPosRankSum=1.457;SB=-2.151e+03 GT:AD:DP:GQ:PL 0/1:336,322:658:99:2513,0,3438 chrI 27448 . T C 2622.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.570;DP=670;Dels=0.00;FS=0.288;HaplotypeScore=99.6146;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=2;MQRankSum=-3.147;QD=3.91;ReadPosRankSum=1.437;SB=-1.979e+03 GT:AD:DP:GQ:PL 0/1:341,328:670:99:2652,0,3719 chrI 27453 . C T 2644.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=14.027;DP=669;Dels=0.00;FS=0.602;HaplotypeScore=195.8099;MLEAC=1;MLEAF=0.500;MQ=35.18;MQ0=2;MQRankSum=-3.577;QD=3.95;ReadPosRankSum=1.600;SB=-2.199e+03 GT:AD:DP:GQ:PL 0/1:343,325:669:99:2674,0,3651 chrI 27458 . T C 3674.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.675;DP=647;Dels=0.00;FS=12.672;HaplotypeScore=201.9361;MLEAC=1;MLEAF=0.500;MQ=36.55;MQ0=2;MQRankSum=-2.902;QD=5.68;ReadPosRankSum=3.898;SB=-2.569e+03 GT:AD:DP:GQ:PL 0/1:253,392:646:99:3674,0,2697 chrI 27460 . C T 3993.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.001;DP=652;Dels=0.00;FS=14.341;HaplotypeScore=205.1042;MLEAC=1;MLEAF=0.500;MQ=36.74;MQ0=1;MQRankSum=-1.787;QD=6.12;ReadPosRankSum=4.150;SB=-2.616e+03 GT:AD:DP:GQ:PL 0/1:256,395:651:99:3993,0,2700 chrI 27461 . T C 2290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.098;DP=658;Dels=0.00;FS=0.624;HaplotypeScore=208.4534;MLEAC=1;MLEAF=0.500;MQ=36.73;MQ0=1;MQRankSum=-5.755;QD=3.48;ReadPosRankSum=3.380;SB=-1.589e+03 GT:AD:DP:GQ:PL 0/1:355,300:658:99:2320,0,3825 chrI 27462 . A G 2352.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.173;DP=660;Dels=0.00;FS=0.628;HaplotypeScore=210.8195;MLEAC=1;MLEAF=0.500;MQ=36.68;MQ0=1;MQRankSum=-6.450;QD=3.56;ReadPosRankSum=2.865;SB=-1.627e+03 GT:AD:DP:GQ:PL 0/1:354,304:660:99:2382,0,4055 chrI 27476 . G A 2788.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.525;DP=693;Dels=0.00;FS=17.206;HaplotypeScore=92.4699;MLEAC=1;MLEAF=0.500;MQ=37.71;MQ0=4;MQRankSum=2.725;QD=4.02;ReadPosRankSum=0.832;SB=-7.400e+02 GT:AD:DP:GQ:PL 0/1:457,236:693:99:2818,0,4443 chrI 27479 . T C 2401.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.079;DP=691;Dels=0.00;FS=0.718;HaplotypeScore=125.8186;MLEAC=1;MLEAF=0.500;MQ=37.69;MQ0=6;MQRankSum=9.085;QD=3.47;ReadPosRankSum=3.054;SB=-6.670e+02 GT:AD:DP:GQ:PL 0/1:498,192:691:99:2431,0,4919 chrI 27497 . T C 2032.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;DP=635;Dels=0.00;FS=4.663;HaplotypeScore=273.2858;MLEAC=1;MLEAF=0.500;MQ=38.38;MQ0=21;MQRankSum=-8.666;QD=3.20;ReadPosRankSum=0.908;SB=-1.282e+03 GT:AD:DP:GQ:PL 0/1:347,288:635:99:2062,0,5044 chrI 27529 . G C 1477.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.621;DP=455;Dels=0.00;FS=1.673;HaplotypeScore=87.5675;MLEAC=1;MLEAF=0.500;MQ=35.01;MQ0=35;MQRankSum=7.264;QD=3.25;ReadPosRankSum=2.856;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:323,130:455:99:1507,0,2805 chrI 27581 . A G 1337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.935;DP=503;Dels=0.00;FS=21.053;HaplotypeScore=242.2293;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=25;MQRankSum=-1.572;QD=2.66;ReadPosRankSum=2.635;SB=-6.030e+02 GT:AD:DP:GQ:PL 0/1:369,132:503:99:1367,0,5381 chrI 27602 . T C 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.398;DP=501;Dels=0.00;FS=8.150;HaplotypeScore=105.7788;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=10;MQRankSum=2.031;QD=0.20;ReadPosRankSum=2.897;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:426,74:501:99:131,0,7675 chrI 27613 . A T 144.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;DP=525;Dels=0.00;FS=4.973;HaplotypeScore=251.8123;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=3;MQRankSum=3.108;QD=0.27;ReadPosRankSum=1.309;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:448,77:525:99:174,0,8204 chrI 27617 . T A 3858.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;DP=496;Dels=0.00;FS=1.046;HaplotypeScore=241.3137;MLEAC=1;MLEAF=0.500;MQ=29.59;MQ0=0;MQRankSum=-1.429;QD=7.78;ReadPosRankSum=-1.216;SB=-2.128e+03 GT:AD:DP:GQ:PL 0/1:247,243:496:99:3858,0,4326 chrI 27623 . T C 1654.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;DP=488;Dels=0.00;FS=2.136;HaplotypeScore=238.9889;MLEAC=1;MLEAF=0.500;MQ=29.76;MQ0=0;MQRankSum=0.526;QD=3.39;ReadPosRankSum=-0.699;SB=-7.950e+02 GT:AD:DP:GQ:PL 0/1:347,135:488:99:1684,0,5686 chrI 27639 . A C,T 7048.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.967;DP=398;Dels=0.00;FS=5.906;HaplotypeScore=15.1795;MLEAC=1,1;MLEAF=0.500,0.500;MQ=29.52;MQ0=0;MQRankSum=-1.825;QD=17.71;ReadPosRankSum=2.942;SB=-3.537e+03 GT:AD:DP:GQ:PL 1/2:3,76,319:398:99:7048,5889,5721,1159,0,342 chrI 27660 . A T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.659;DP=338;Dels=0.00;FS=86.190;HaplotypeScore=124.3581;MLEAC=1;MLEAF=0.500;MQ=29.38;MQ0=0;MQRankSum=-0.016;QD=0.06;ReadPosRankSum=3.700;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:292,45:338:50:50,0,4206 chrI 27667 . A G 242.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;DP=307;Dels=0.00;FS=13.468;HaplotypeScore=104.3731;MLEAC=1;MLEAF=0.500;MQ=29.51;MQ0=0;MQRankSum=-0.422;QD=0.79;ReadPosRankSum=0.621;SB=-5.680e+02 GT:AD:DP:GQ:PL 0/1:221,86:307:99:272,0,3738 chrI 27681 . A G 207.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;DP=248;Dels=0.00;FS=136.460;HaplotypeScore=4.1379;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=-0.662;QD=0.83;ReadPosRankSum=-0.892;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,77:248:99:237,0,2819 chrI 27684 . A C 215.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.844;DP=240;Dels=0.00;FS=150.772;HaplotypeScore=6.4366;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-1.322;QD=0.90;ReadPosRankSum=1.001;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,75:240:99:245,0,2705 chrI 27685 . G T 236.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.918;DP=238;Dels=0.00;FS=149.519;HaplotypeScore=8.0140;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=1.635;QD=0.99;ReadPosRankSum=1.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,75:238:99:266,0,2590 chrI 27688 . A T 256.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.896;DP=240;Dels=0.00;FS=168.253;HaplotypeScore=12.7461;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=2.668;QD=1.07;ReadPosRankSum=1.553;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:159,81:240:99:286,0,2571 chrI 27693 . G C 251.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.832;DP=229;Dels=0.00;FS=168.467;HaplotypeScore=11.9574;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=0;MQRankSum=-1.183;QD=1.10;ReadPosRankSum=3.045;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:146,82:229:99:281,0,2106 chrI 27699 . T G 195.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DP=204;Dels=0.00;FS=176.834;HaplotypeScore=9.6622;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=0;MQRankSum=-0.398;QD=0.96;ReadPosRankSum=6.181;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,72:204:99:225,0,1946 chrI 27701 . A T 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.485;DP=203;Dels=0.00;FS=183.751;HaplotypeScore=7.2961;MLEAC=1;MLEAF=0.500;MQ=28.17;MQ0=0;MQRankSum=0.224;QD=1.08;ReadPosRankSum=6.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,72:203:99:250,0,1972 chrI 27702 . A T 227.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.223;DP=200;Dels=0.00;FS=207.187;HaplotypeScore=9.6622;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=0.057;QD=1.14;ReadPosRankSum=6.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,72:200:99:257,0,1806 chrI 27703 . C G 222.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;DP=199;Dels=0.00;FS=202.982;HaplotypeScore=11.2395;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=0.053;QD=1.12;ReadPosRankSum=6.704;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,72:199:99:252,0,1752 chrI 27716 . T C,G 1474.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.78;MQ0=0;QD=8.77;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/2:0,101,64:168:99:1534,324,154,1210,0,1165 chrI 27723 . A G,T 1082.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.50;MQ0=0;MQRankSum=0.639;QD=8.66;ReadPosRankSum=2.410;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/2:2,67,56:125:99:1142,705,645,437,0,344 chrI 27725 . C T 1158 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.6585;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=9.49;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1191,141,0 chrI 27726 . A G 1048 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.6585;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;QD=8.73;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1081,132,0 chrI 27729 . C A 1165 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=8.09;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1198,147,0 chrI 27732 . G T 1117 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=7.60;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1150,144,0 chrI 27738 . A C 1222 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=7.99;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:1255,159,0 chrI 27744 . T C 1393 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=8.44;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:1426,171,0 chrI 27747 . T A 1192 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=8.11;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1225,147,0 chrI 27749 . C T 1072 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=7.29;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1105,135,0 chrI 27750 . G A 1105 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=7.52;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1138,138,0 chrI 27756 . A G 1200 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=119.2468;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=6.49;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:1233,153,0 chrI 27761 . G A 1200 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=120.3952;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=6.86;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1233,150,0 chrI 27781 . C T 851 SnpCluster AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=34.5918;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=3.89;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,219:219:99:884,108,0 chrI 27782 . C G 794 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=34.5918;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=3.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,196:219:99:827,105,0 chrI 27783 . A G 893 SnpCluster AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=35.3804;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=4.00;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,222:223:99:926,117,0 chrI 27810 . T C 401.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-9.263;DP=246;Dels=0.00;FS=81.152;HaplotypeScore=87.0330;MLEAC=1;MLEAF=0.500;MQ=29.74;MQ0=0;MQRankSum=-0.611;QD=1.63;ReadPosRankSum=0.846;SB=-8.260e+02 GT:AD:DP:GQ:PL 0/1:129,117:246:99:431,0,530 chrI 27816 . G A 450.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.547;DP=233;Dels=0.00;FS=99.928;HaplotypeScore=115.1011;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=0;MQRankSum=-0.244;QD=1.93;ReadPosRankSum=1.873;SB=-9.280e+02 GT:AD:DP:GQ:PL 0/1:118,115:233:99:480,0,530 chrI 27818 . A G 232.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DP=233;Dels=0.00;FS=81.721;HaplotypeScore=116.0905;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=0;MQRankSum=-2.071;QD=1.00;ReadPosRankSum=2.021;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,65:233:99:262,0,796 chrI 27822 . T C 457.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.071;DP=223;Dels=0.00;FS=92.048;HaplotypeScore=110.1723;MLEAC=1;MLEAF=0.500;MQ=29.75;MQ0=0;MQRankSum=0.211;QD=2.05;ReadPosRankSum=2.840;SB=-8.750e+02 GT:AD:DP:GQ:PL 0/1:111,112:223:99:487,0,562 chrI 27823 . C A 490.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;DP=220;Dels=0.00;FS=61.424;HaplotypeScore=111.0044;MLEAC=1;MLEAF=0.500;MQ=29.82;MQ0=0;MQRankSum=-1.263;QD=2.23;ReadPosRankSum=1.422;SB=-9.310e+02 GT:AD:DP:GQ:PL 0/1:76,112:220:99:520,0,363 chrI 27824 . T C 313.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.473;DP=220;Dels=0.00;FS=40.847;HaplotypeScore=111.7931;MLEAC=1;MLEAF=0.500;MQ=30.03;MQ0=0;MQRankSum=1.135;QD=1.42;ReadPosRankSum=0.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,75:220:99:343,0,697 chrI 27825 . C T 490.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.942;DP=221;Dels=0.00;FS=91.064;HaplotypeScore=111.7931;MLEAC=1;MLEAF=0.500;MQ=30.02;MQ0=0;MQRankSum=-1.277;QD=2.22;ReadPosRankSum=2.944;SB=-9.590e+02 GT:AD:DP:GQ:PL 0/1:107,114:221:99:520,0,460 chrI 27869 . A G 471.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.072;DP=164;Dels=0.01;FS=53.914;HaplotypeScore=40.0211;MLEAC=1;MLEAF=0.500;MQ=37.27;MQ0=0;MQRankSum=-2.039;QD=2.87;ReadPosRankSum=0.378;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,44:163:99:501,0,1727 chrI 27879 . C T 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;DP=155;Dels=0.00;FS=35.991;HaplotypeScore=17.3297;MLEAC=1;MLEAF=0.500;MQ=37.37;MQ0=0;MQRankSum=-1.761;QD=1.30;ReadPosRankSum=-1.101;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,34:155:99:231,0,1927 chrI 27881 . G A 177.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DP=152;Dels=0.00;FS=47.164;HaplotypeScore=16.3631;MLEAC=1;MLEAF=0.500;MQ=37.18;MQ0=0;MQRankSum=-0.517;QD=1.16;ReadPosRankSum=-1.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,31:152:99:207,0,2022 chrI 27882 . G T 2048.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.656;DP=150;Dels=0.00;FS=43.826;HaplotypeScore=2.5707;MLEAC=1;MLEAF=0.500;MQ=37.52;MQ0=0;MQRankSum=0.863;QD=13.65;ReadPosRankSum=1.870;SB=-1.199e+03 GT:AD:DP:GQ:PL 0/1:31,119:150:99:2078,0,187 chrI 27885 . T C 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.365;DP=151;Dels=0.00;FS=47.730;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=37.49;MQ0=0;MQRankSum=-2.813;QD=0.65;ReadPosRankSum=-2.099;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,28:151:99:128,0,2055 chrI 27889 . G T 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.163;DP=149;Dels=0.00;FS=43.985;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=37.86;MQ0=0;MQRankSum=-1.846;QD=0.82;ReadPosRankSum=-3.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,27:149:99:152,0,1981 chrI 27914 . T C 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.690;DP=119;Dels=0.00;FS=15.303;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;MQRankSum=1.808;QD=17.39;ReadPosRankSum=4.421;SB=-8.985e+02 GT:AD:DP:GQ:PL 1/1:10,107:119:99:2103,108,0 chrI 27970 . T G 428 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=10.97;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,37:39:57:461,57,0 chrI 27983 . T A 576 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=0;QD=15.57;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:609,72,0 chrI 27997 . T C 744 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=16.17;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:777,96,0 chrI 28007 . G C 926 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;QD=16.54;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:959,117,0 chrI 28161 . G A 363 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=12.10;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:48:396,48,0 chrI 28167 . A T 397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.035;DP=33;Dels=0.00;FS=15.194;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.658;QD=12.03;ReadPosRankSum=2.536;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:3,30:33:51:430,51,0 chrI 28278 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.33;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1151,138,0 chrI 28517 . A G 2090 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2123,261,0 chrI 28556 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2269,267,0 chrI 28672 . T G 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.304;QD=20.31;ReadPosRankSum=1.693;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1861,225,0 chrI 29056 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.163;QD=21.16;ReadPosRankSum=1.699;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2297,287,0 chrI 29970 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;QD=18.38;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1136,132,0 chrI 29984 . T G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.263;DP=53;Dels=0.00;FS=10.978;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;MQRankSum=-1.364;QD=0.30;ReadPosRankSum=-3.317;SB=1.24 GT:AD:DP:GQ:PL 1/1:49,4:53:6:47,6,0 chrI 30004 . T C 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=7.911;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=1.528;QD=12.81;ReadPosRankSum=1.681;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:904,117,0 chrI 30011 . A T 898 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=13.40;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:931,111,0 chrI 30018 . G A 834 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=13.90;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:867,105,0 chrI 30036 . G A 754 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=11.78;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:96:787,96,0 chrI 30044 . A T 588 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=10.14;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:78:621,78,0 chrI 30051 . C T 545 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=9.73;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:578,72,0 chrI 30055 . C T 585 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.75;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:75:618,75,0 chrI 30125 . G T 131.06 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=5.46;SB=-2.141e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:164,21,0 chrI 30153 . G A 143.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=7.53;SB=-1.471e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:176,21,0 chrI 30164 . G A 113.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=7.54;SB=-9.713e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:146,18,0 chrI 30190 . A G 291 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=17.12;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:42:324,42,0 chrI 30198 . T C 238 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=17.00;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:36:271,36,0 chrI 30202 . C T 317 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=0;QD=15.85;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:45:350,45,0 chrI 30226 . G A 493 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=17.61;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:526,66,0 chrI 30335 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=19.36;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1388,168,0 chrI 30361 . A T 736 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=13.63;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:93:769,93,0 chrI 30371 . C A 553 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=10.84;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:75:586,75,0 chrI 30382 . C A 321 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=6.98;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:45:354,45,0 chrI 30388 . G A 366 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=8.13;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:48:399,48,0 chrI 30427 . G C 238 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=5.80;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:36:271,36,0 chrI 30435 . G A 372 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=8.27;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:51:405,51,0 chrI 30468 . G C 852 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=14.95;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:885,114,0 chrI 30478 . C T 926 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=14.25;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:959,120,0 chrI 30490 . A G 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;MQRankSum=-0.326;QD=18.99;ReadPosRankSum=1.682;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1343,173,0 chrI 30522 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;MQRankSum=-0.247;QD=19.24;ReadPosRankSum=1.697;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,97:100:99:1957,242,0 chrI 30585 . T A 2078 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=19.06;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2111,260,0 chrI 30601 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=18.37;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1723,213,0 chrI 30605 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;QD=18.12;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1682,204,0 chrI 30661 . T A 593 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=8.35;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:81:626,81,0 chrI 30662 . T G 566 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;MQRankSum=-1.070;QD=8.20;ReadPosRankSum=1.681;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:78:599,78,0 chrI 30669 . T C 568 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=8.87;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:78:601,78,0 chrI 30670 . T C 562 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-2.375;QD=8.52;ReadPosRankSum=2.375;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:78:595,78,0 chrI 30693 . C A 881 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;QD=12.07;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:914,114,0 chrI 30713 . T G 1060 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=13.77;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1093,135,0 chrI 30747 . A C 1224 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=15.90;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1257,156,0 chrI 30749 . G A 1381 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=17.94;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1414,171,0 chrI 30832 . C G 1274 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=9.2939;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=18.74;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1307,156,0 chrI 30930 . T A 530 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=17.67;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:563,69,0 chrI 30987 . T G 305 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.06;SB=-4.900e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:42:338,42,0 chrI 30997 . G A 319 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.27;SB=-4.700e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:42:352,42,0 chrI 31018 . G A 315 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.53;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:42:348,42,0 chrI 31019 . G T 315 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.50;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:42:348,42,0 chrI 31107 . C A 225 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.45;SB=-1.039e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:258,30,0 chrI 31506 . T C 189.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.879;DP=72;Dels=0.01;FS=4.573;HaplotypeScore=16.0480;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;MQRankSum=2.369;QD=2.63;ReadPosRankSum=1.938;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:7,63:71:27:222,27,0 chrI 31508 . T C 163.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=72;Dels=0.01;FS=4.300;HaplotypeScore=15.2594;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;MQRankSum=1.578;QD=2.26;ReadPosRankSum=2.797;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:8,62:71:24:196,24,0 chrI 31510 . T C 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DP=69;Dels=0.01;FS=28.841;HaplotypeScore=13.6040;MLEAC=1;MLEAF=0.500;MQ=42.34;MQ0=0;MQRankSum=2.871;QD=0.72;ReadPosRankSum=-3.056;SB=-1.085e-02 GT:AD:DP:GQ:PL 0/1:63,4:68:27:80,0,27 chrI 31539 . A G 558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=1.291;QD=8.45;ReadPosRankSum=2.301;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:75:591,75,0 chrI 32493 . C T 6342.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=15.9961;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.73;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:6342,764,0 chrI 32556 . A G 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.7877;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.108;QD=18.61;ReadPosRankSum=2.398;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:4391,548,0 chrI 32574 . T G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=5.351;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-1.267;QD=17.06;ReadPosRankSum=-0.289;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:3702,461,0 chrI 32595 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=17.20;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:3767,470,0 chrI 32650 . G T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=3.6529;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.11;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:4654,543,0 chrI 32652 . A C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=-1.924;QD=17.05;ReadPosRankSum=2.411;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,255:258:99:4400,542,0 chrI 32682 . G A 4757.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.65;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4757,569,0 chrI 32766 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=18.81;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2873,359,0 chrI 32880 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.39;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2806,338,0 chrI 32947 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.16;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2466,297,0 chrI 33147 . G T 2560 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.81;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2593,312,0 chrI 33347 . T A 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=3.795;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.350;QD=18.20;ReadPosRankSum=1.678;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2362,290,0 chrI 33348 . G T 2396 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.72;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2429,294,0 chrI 33512 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=201;Dels=0.00;FS=11.026;HaplotypeScore=17.8925;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.788;QD=20.25;ReadPosRankSum=2.375;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,196:201:99:4071,512,0 chrI 33548 . A C 4697.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.4688;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.55;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,213:218:99:4697,581,0 chrI 33612 . A G 5174.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.3813;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.20;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,241:244:99:5174,635,0 chrI 33756 . C T 5785.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=11.3078;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.37;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:5785,715,0 chrI 33864 . G C 5282.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.49;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:5282,667,0 chrI 33867 . T C 5155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=4.2205;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.850;QD=19.02;ReadPosRankSum=1.719;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:5155,649,0 chrI 34245 . T C 4974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=21.5575;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.308;QD=17.76;ReadPosRankSum=1.682;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:1,278:280:99:4974,614,0 chrI 34308 . C T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.28;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4744,575,0 chrI 34314 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.8200;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.35;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4250,518,0 chrI 34573 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.31;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3146,372,0 chrI 34727 . T C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=3.917;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.778;QD=19.70;ReadPosRankSum=1.707;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2752,344,0 chrI 35059 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.4540;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=16.10;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1289,156,0 chrI 35070 . C T 1108 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=15.39;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1141,135,0 chrI 35129 . G A 41.97 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=10.4258;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=0.74;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:9:74,9,0 chrI 35223 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2251,270,0 chrI 35343 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.65;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2965,365,0 chrI 35466 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.30;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3397,410,0 chrI 35508 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=17.7191;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.215;QD=18.72;ReadPosRankSum=1.675;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3407,419,0 chrI 35565 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=3.694;HaplotypeScore=6.7251;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=1.328;QD=17.51;ReadPosRankSum=0.252;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:3624,449,0 chrI 35568 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=210;Dels=0.00;FS=2.908;HaplotypeScore=16.9182;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-1.145;QD=17.79;ReadPosRankSum=2.378;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:3735,455,0 chrI 35607 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=19.2912;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.277;QD=14.90;ReadPosRankSum=1.645;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:2984,374,0 chrI 35751 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=165;Dels=0.00;FS=14.370;HaplotypeScore=14.0234;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.588;QD=19.48;ReadPosRankSum=3.343;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:99:3248,398,0 chrI 36160 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3406,410,0 chrI 36313 . A G 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.058;QD=16.55;ReadPosRankSum=1.693;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1506,186,0 chrI 36524 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.2651;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=24.10;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2202,258,0 chrI 36574 . A G 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=6.403;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.313;QD=22.63;ReadPosRankSum=1.690;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1934,237,0 chrI 36637 . A G 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.371;QD=22.14;ReadPosRankSum=1.696;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2158,264,0 chrI 37281 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.65;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1546,192,0 chrI 37553 . A G 2348 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.6902;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.07;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2381,296,0 chrI 37862 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.8543;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.32;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3633,446,0 chrI 37893 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.60;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3450,428,0 chrI 37913 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=17.71;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2955,356,0 chrI 37922 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=17.75;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2766,330,0 chrI 38036 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.09;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2922,348,0 chrI 38108 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=167;Dels=0.00;FS=9.930;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-1.540;QD=18.80;ReadPosRankSum=2.921;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3173,386,0 chrI 38120 . A T 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=160;Dels=0.00;FS=3.021;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.376;QD=19.73;ReadPosRankSum=2.404;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3190,383,0 chrI 38338 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.75;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2877,350,0 chrI 38361 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.9577;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.37;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2803,336,0 chrI 38408 . G T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.67;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3403,413,0 chrI 38514 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.1778;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.580;QD=20.11;ReadPosRankSum=1.675;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3700,461,0 chrI 38762 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.57;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3731,452,0 chrI 39066 . T C 2531 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2564,317,0 chrI 39162 . C G 3527.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.32;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3527,431,0 chrI 39403 . C A 2605 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.89;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2638,318,0 chrI 39708 . A C 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=121;Dels=0.00;FS=2.251;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.859;QD=19.13;ReadPosRankSum=1.609;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2348,290,0 chrI 39723 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.559;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.235;QD=19.73;ReadPosRankSum=1.703;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2361,285,0 chrI 39795 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.71;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1485,180,0 chrI 40237 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.23;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3034,363,0 chrI 40380 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.19;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2533,306,0 chrI 40523 . A T 2376 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2409,296,0 chrI 40866 . T C 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=4.628;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.480;QD=20.79;ReadPosRankSum=1.703;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2549,314,0 chrI 40914 . C G 2416 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.13;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2449,305,0 chrI 41271 . A C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1505;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.14;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3658,455,0 chrI 41481 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=211;Dels=0.00;FS=6.251;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.529;QD=19.86;ReadPosRankSum=2.415;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4190,521,0 chrI 41883 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.30;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1652,201,0 chrI 41987 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1034,129,0 chrI 42019 . A C 982 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.25;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1015,126,0 chrI 42115 . T C 781 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=12.02;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:814,102,0 chrI 42119 . G A 850 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=12.50;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:883,111,0 chrI 42186 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=16.75;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1742,210,0 chrI 42257 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.10;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2840,344,0 chrI 42290 . A T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.59;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3377,410,0 chrI 42306 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=18.02;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3025,357,0 chrI 42315 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.04;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2827,336,0 chrI 42484 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.2237;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=14.16;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:3285,387,0 chrI 44992 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3205,378,0 chrI 45686 . A G 1206 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=14.36;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1239,150,0 chrI 46372 . G T 5767.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=13.8985;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:5767,695,0 chrI 48054 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2700,321,0 chrI 48751 . T C 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.289;QD=18.19;ReadPosRankSum=1.704;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2343,290,0 chrI 50343 . A G 2756 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8464;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.72;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2789,338,0 chrI 50547 . T C 1688 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.40;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1721,210,0 chrI 52613 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.23;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1610,195,0 chrI 52632 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.74;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1790,222,0 chrI 52635 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.88;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1638,206,0 chrI 54806 . T C 1119 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.99;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1152,141,0 chrI 55426 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.5944;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=21.67;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1918,231,0 chrI 55899 . T C 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=103;Dels=0.00;FS=9.290;HaplotypeScore=9.4072;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.108;QD=19.76;ReadPosRankSum=2.932;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2068,252,0 chrI 56107 . T C 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.330;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.341;QD=19.42;ReadPosRankSum=1.705;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2499,311,0 chrI 57351 . G T 2878 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=17.77;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2911,350,0 chrI 57625 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.5157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3068,369,0 chrI 58079 . C A 2914 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.4450;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.17;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2947,354,0 chrI 58487 . G T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.79;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4057,494,0 chrI 58522 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=6.220;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.151;QD=19.41;ReadPosRankSum=2.418;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3080,377,0 chrI 58539 . A G 3145 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.5817;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.28;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3178,389,0 chrI 58644 . T A 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.1384;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.627;QD=20.80;ReadPosRankSum=1.697;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4140,489,0 chrI 58794 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.9693;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.34;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3606,431,0 chrI 59073 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3980,471,0 chrI 59229 . G T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.01;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3622,432,0 chrI 59349 . A C 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=4.298;HaplotypeScore=15.7763;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.874;QD=21.18;ReadPosRankSum=1.717;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4808,593,0 chrI 59394 . G A 4487.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4487,545,0 chrI 59659 . C G 4313.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=19.4409;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=17.97;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:4313,530,0 chrI 59859 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.38;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3604,437,0 chrI 59976 . T C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=148;Dels=0.00;FS=4.454;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.179;QD=16.95;ReadPosRankSum=1.708;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:2542,323,0 chrI 59985 . T C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=145;Dels=0.00;FS=8.387;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.369;QD=16.77;ReadPosRankSum=2.415;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,139:145:99:2465,302,0 chrI 60108 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.95;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3006,357,0 chrI 60198 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.57;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2600,309,0 chrI 60417 . C T 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.3465;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.975;QD=21.91;ReadPosRankSum=-1.524;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4054,469,0 chrI 60876 . C T 5450.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=19.7605;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.19;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5450,668,0 chrI 61451 . G A 6461.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=24.5500;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=19.58;SB=-3.638e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:6461,776,0 chrI 61585 . C T 7687.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=24.1036;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=20.83;SB=-4.120e+03 GT:AD:DP:GQ:PL 1/1:0,368:369:99:7687,917,0 chrI 62110 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6542;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.32;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3699,443,0 chrI 62308 . T C 5010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=3.207;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.315;QD=20.12;ReadPosRankSum=1.663;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5010,617,0 chrI 62361 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=20.5396;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.54;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:3653,449,0 chrI 62565 . G A 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.7372;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.296;QD=18.30;ReadPosRankSum=-0.296;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1534,169,0 chrI 62654 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.64;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1487,183,0 chrI 62726 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2814,336,0 chrI 62893 . A T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.1676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4087,497,0 chrI 63025 . T C 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=3.266;HaplotypeScore=16.7905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=20.13;ReadPosRankSum=1.716;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4228,527,0 chrI 63385 . T C 1985 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=17.41;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2018,246,0 chrI 63520 . T C 2108 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.17;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2141,269,0 chrI 63646 . T C 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.819;HaplotypeScore=5.7979;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.111;QD=16.87;ReadPosRankSum=1.699;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1821,222,0 chrI 63658 . G A 1816 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=16.51;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1849,222,0 chrI 63869 . T C 1606 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.46;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1639,198,0 chrI 64258 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1648,195,0 chrI 64663 . A G 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=216;Dels=0.00;FS=2.745;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.619;QD=19.12;ReadPosRankSum=2.427;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4130,512,0 chrI 64676 . C T 4304.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.93;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4304,509,0 chrI 64781 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.47;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3930,473,0 chrI 64915 . A C 2044 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=16.48;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2077,260,0 chrI 65134 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.44;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2177,258,0 chrI 65172 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.17;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2294,273,0 chrI 65365 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.66;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2264,276,0 chrI 65557 . A G 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.167;QD=16.34;ReadPosRankSum=1.662;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:850,105,0 chrI 65768 . T C 66.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=62.3330;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.556;QD=0.83;ReadPosRankSum=2.388;SB=-2.705e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:12:99,12,0 chrI 66003 . T C 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0159;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.248;QD=19.27;ReadPosRankSum=1.684;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2788,344,0 chrI 66129 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=4.260;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.155;QD=23.20;ReadPosRankSum=1.684;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3364,407,0 chrI 66168 . T G 3058 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.99;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3091,383,0 chrI 66575 . G C 1952 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1985,251,0 chrI 67032 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=2.940;HaplotypeScore=12.1418;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.361;QD=21.41;ReadPosRankSum=2.357;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3425,425,0 chrI 67262 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8256;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=18.45;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3487,437,0 chrI 67269 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=3.476;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.565;QD=19.39;ReadPosRankSum=1.714;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3626,443,0 chrI 67275 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=18.42;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3591,423,0 chrI 67373 . T C 5387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=258;Dels=0.00;FS=5.231;HaplotypeScore=22.9031;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=2.488;QD=20.88;ReadPosRankSum=3.414;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:4,254:258:99:5387,673,0 chrI 67437 . G A 5153.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=13.7071;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.29;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5153,617,0 chrI 67473 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-1.012;QD=18.05;ReadPosRankSum=1.699;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:3736,470,0 chrI 67476 . C G 3782.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.67;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,209:214:99:3782,473,0 chrI 67506 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=17.88;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3934,470,0 chrI 67715 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.2398;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.79;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2923,356,0 chrI 68155 . T C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.3811;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.947;QD=20.92;ReadPosRankSum=2.939;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2418,299,0 chrI 68725 . G C 4226.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.92;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4226,530,0 chrI 68739 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.72;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3649,440,0 chrI 68869 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=234;Dels=0.00;FS=3.086;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-1.090;QD=18.14;ReadPosRankSum=1.687;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:4244,521,0 chrI 68875 . G C 4108.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.6564;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.26;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4108,506,0 chrI 69005 . T C 4460.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.29;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:4460,562,0 chrI 69009 . T G 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=255;Dels=0.00;FS=3.018;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.271;QD=16.94;ReadPosRankSum=2.411;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:4320,533,0 chrI 69289 . G T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.9848;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.79;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4235,515,0 chrI 69526 . T C 2430 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.7753;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.23;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2463,300,0 chrI 69555 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7862;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=18.29;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2338,279,0 chrI 69587 . C T 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;MQRankSum=0.143;QD=14.87;ReadPosRankSum=1.541;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1669,204,0 chrI 69588 . T A 1651 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=15.15;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1684,207,0 chrI 69603 . T C 1265 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=13.32;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1298,159,0 chrI 69828 . C T 184.01 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=6.1996;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=2.59;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:27:217,27,0 chrI 70024 . T C 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.672;QD=20.29;ReadPosRankSum=1.709;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3016,377,0 chrI 70045 . A G 2804 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.21;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2837,359,0 chrI 70071 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.37;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3150,377,0 chrI 70345 . G T 2289 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.73;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2322,279,0 chrI 70416 . T G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=116;Dels=0.01;FS=3.667;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.365;QD=19.85;ReadPosRankSum=1.702;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2336,287,0 chrI 70497 . A G 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-1.031;QD=17.83;ReadPosRankSum=1.691;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1566,189,0 chrI 70522 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=63.6897;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=16.89;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1317,165,0 chrI 70536 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.94;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1325,162,0 chrI 70621 . T C 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.849;QD=21.08;ReadPosRankSum=1.664;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2183,269,0 chrI 70632 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.21;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1973,240,0 chrI 71023 . T C 922 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.82;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:955,114,0 chrI 71038 . G A 825 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=16.84;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:858,99,0 chrI 71540 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.180;DP=92;Dels=0.00;FS=7.315;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=2.023;QD=0.18;ReadPosRankSum=-2.922;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:87,3:92:6:48,6,0 chrI 71601 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=15.84;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1126,138,0 chrI 71616 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=17.49;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1362,159,0 chrI 71714 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.27;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2117,249,0 chrI 71782 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4187;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.57;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2787,333,0 chrI 73478 . A G 1002 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1035,134,0 chrI 73490 . T C 1004 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=21.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1037,129,0 chrI 73529 . T C 674 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=18.22;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:87:707,87,0 chrI 73542 . A T 562 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=15.61;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:595,72,0 chrI 73720 . C G 1235 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=17.90;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1268,156,0 chrI 73721 . C T 1254 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.72;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1287,153,0 chrI 73801 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.41;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1314,159,0 chrI 73871 . T C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-1.115;QD=17.16;ReadPosRankSum=1.664;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1766,219,0 chrI 73877 . G T 1765 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=17.48;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1798,216,0 chrI 73937 . G T 1614 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.64;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1647,201,0 chrI 74208 . C T 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.7150;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-0.142;QD=18.00;ReadPosRankSum=2.677;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2355,276,0 chrI 74209 . A C 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.715;QD=15.26;ReadPosRankSum=1.650;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1986,245,0 chrI 74227 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=17.02;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2245,267,0 chrI 74242 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-1.168;QD=16.25;ReadPosRankSum=1.705;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2145,263,0 chrI 74790 . G A 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.8319;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-1.431;QD=18.16;ReadPosRankSum=0.979;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1704,207,0 chrI 74826 . A G 1170 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=17.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1203,150,0 chrI 74843 . C T 990 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1023,126,0 chrI 74994 . G A 65.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=7.28;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:98,12,0 chrI 75211 . T C 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.047;QD=21.36;ReadPosRankSum=2.404;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2318,284,0 chrI 75388 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.26;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2826,344,0 chrI 75535 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2932,353,0 chrI 75598 . T C 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.01;FS=3.131;HaplotypeScore=14.1235;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.973;QD=18.31;ReadPosRankSum=1.685;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2724,338,0 chrI 75847 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.16;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4169,500,0 chrI 76030 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.62;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3464,425,0 chrI 76051 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.8699;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.04;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3408,407,0 chrI 76117 . T C 2641 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.04;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2674,329,0 chrI 76297 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=18.36;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2273,276,0 chrI 76417 . T C 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=211;Dels=0.00;FS=2.963;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.552;QD=21.07;ReadPosRankSum=2.426;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4446,548,0 chrI 76496 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=4.883;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.386;QD=19.03;ReadPosRankSum=1.666;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3020,365,0 chrI 76497 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=4.856;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=1.066;QD=18.73;ReadPosRankSum=1.665;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:2992,362,0 chrI 76528 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.706;DP=168;Dels=0.00;FS=11.035;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.065;QD=16.24;ReadPosRankSum=3.752;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:5,163:168:99:2762,335,0 chrI 77073 . A G 2970 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.52;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3003,365,0 chrI 77115 . G T 2926 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.90;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2959,362,0 chrI 77433 . G A 3010 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.89;MQ0=0;QD=20.20;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3043,363,0 chrI 77517 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.020;DP=143;Dels=0.00;FS=33.531;HaplotypeScore=90.9254;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;MQRankSum=-3.920;QD=0.12;ReadPosRankSum=-4.778;SB=1.24 GT:AD:DP:GQ:PL 1/1:115,27:143:6:49,6,0 chrI 77554 . T G 1623 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.6754;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=10.27;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1656,206,0 chrI 77581 . T A 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=-1.206;QD=13.23;ReadPosRankSum=1.469;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2136,263,0 chrI 77674 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.63;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3549,428,0 chrI 77737 . C T 3484.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.7299;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=20.26;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3484,428,0 chrI 78461 . C T 5257.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.9753;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.78;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5257,629,0 chrI 78560 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=4.750;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.824;QD=21.27;ReadPosRankSum=1.715;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4403,536,0 chrI 78787 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3526,431,0 chrI 78910 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3446,416,0 chrI 79177 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2466,297,0 chrI 79449 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=15.97;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1550,200,0 chrI 79659 . A T 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=12.361;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.068;QD=20.42;ReadPosRankSum=2.400;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2055,249,0 chrI 79680 . T G 2204 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=19.33;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2237,273,0 chrI 79924 . A G 2674 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=14.5361;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.73;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2707,335,0 chrI 80326 . T C 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=149;Dels=0.00;FS=2.776;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.361;QD=21.17;ReadPosRankSum=2.400;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3187,392,0 chrI 80554 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2056,246,0 chrI 80931 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.79;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2473,294,0 chrI 80946 . G A 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=5.166;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.100;QD=21.24;ReadPosRankSum=0.738;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2497,300,0 chrI 81327 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.039;QD=20.91;ReadPosRankSum=1.689;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3367,416,0 chrI 81432 . G T 2516 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.35;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2549,309,0 chrI 81436 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.27;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2596,314,0 chrI 81731 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.644;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.428;QD=19.39;ReadPosRankSum=1.711;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3174,389,0 chrI 82076 . G C 3138 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.12;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,150:156:99:3171,392,0 chrI 82099 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.35;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3541,428,0 chrI 82244 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.528;DP=187;Dels=0.00;FS=18.639;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.775;QD=19.30;ReadPosRankSum=3.671;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:5,181:187:99:3609,440,0 chrI 82323 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.75;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3164,386,0 chrI 82379 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.1185;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.82;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4439,530,0 chrI 82662 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.968;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.677;QD=21.35;ReadPosRankSum=1.714;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4014,488,0 chrI 82711 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.9402;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3523,449,0 chrI 83029 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.80;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3347,399,0 chrI 83337 . A G 2835 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.15;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2868,353,0 chrI 83452 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.8435;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.47;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2975,354,0 chrI 83575 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.367;QD=20.09;ReadPosRankSum=1.671;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3436,419,0 chrI 83604 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.98;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2766,327,0 chrI 83613 . T C 2796 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.27;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2829,341,0 chrI 83797 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.74;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3579,431,0 chrI 83903 . T C 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.820;DP=236;Dels=0.00;FS=7.962;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.195;QD=21.04;ReadPosRankSum=3.693;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:5,229:236:99:4966,611,0 chrI 84108 . A G 5342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=279;Dels=0.00;FS=9.124;HaplotypeScore=11.6476;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.661;QD=19.15;ReadPosRankSum=3.398;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:4,274:279:99:5342,656,0 chrI 84167 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.1705;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.99;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3893,482,0 chrI 84349 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.1690;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.636;QD=20.01;ReadPosRankSum=1.713;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3621,446,0 chrI 84438 . G C 2192 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=17.54;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2225,270,0 chrI 84858 . C A 2618 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2651,320,0 chrI 85103 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=3.406;HaplotypeScore=12.2129;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.412;QD=19.49;ReadPosRankSum=1.714;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3820,467,0 chrI 85396 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=155;Dels=0.00;FS=11.271;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.020;QD=18.65;ReadPosRankSum=2.954;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:2923,356,0 chrI 85436 . A T 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.106;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.594;QD=20.86;ReadPosRankSum=1.707;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2911,348,0 chrI 85480 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=18.1433;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.20;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2958,354,0 chrI 85663 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.5492;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.62;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2584,312,0 chrI 85944 . T C 2100 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.27;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2133,258,0 chrI 85945 . T C 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.429;QD=17.91;ReadPosRankSum=1.669;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1985,245,0 chrI 86018 . T G 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=4.457;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.895;QD=20.22;ReadPosRankSum=1.617;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2459,302,0 chrI 86324 . A G 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=113;Dels=0.00;FS=6.218;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.406;QD=19.23;ReadPosRankSum=2.362;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2206,278,0 chrI 86597 . A G 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.171;HaplotypeScore=10.5590;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.661;QD=20.50;ReadPosRankSum=1.701;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2329,287,0 chrI 86648 . A G 2379 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.05;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2412,291,0 chrI 86725 . G T 2085 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.49;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2118,258,0 chrI 86849 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5441;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.51;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2722,321,0 chrI 86939 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.08;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2041,246,0 chrI 86963 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.89;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2016,243,0 chrI 87005 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.38;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2417,288,0 chrI 87097 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.27;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2846,342,0 chrI 87114 . C A 2537 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.2273;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=17.87;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2570,314,0 chrI 87217 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.83;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3864,458,0 chrI 87548 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.99;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3632,455,0 chrI 87602 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.41;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2731,327,0 chrI 87608 . A T 2686 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.82;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2719,327,0 chrI 87859 . T G 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.732;QD=21.66;ReadPosRankSum=1.696;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,96:99:99:2177,269,0 chrI 88008 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.9470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2209,270,0 chrI 88212 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.48;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2398,291,0 chrI 88393 . A C 1839 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.56;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1872,231,0 chrI 88638 . A G 1844 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=16.61;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:1877,242,0 chrI 88645 . G C 1840 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=16.43;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1873,236,0 chrI 88833 . C G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.18;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3431,428,0 chrI 89430 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.53;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2435,296,0 chrI 89517 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2179,258,0 chrI 89762 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.235;QD=20.37;ReadPosRankSum=1.703;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2457,305,0 chrI 89805 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.57;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2069,249,0 chrI 90070 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.115;QD=19.95;ReadPosRankSum=1.698;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2048,249,0 chrI 90106 . A G 2234 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.69;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2267,276,0 chrI 90138 . A G 2299 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.69;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2332,282,0 chrI 90168 . A G 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=105;Dels=0.00;FS=8.367;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.127;QD=18.66;ReadPosRankSum=3.220;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:4,100:105:99:1992,240,0 chrI 90330 . G T 2152 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.74;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2185,267,0 chrI 90387 . G A 2253 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.66;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2286,273,0 chrI 90665 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2477,294,0 chrI 90924 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.230;QD=19.75;ReadPosRankSum=1.706;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2620,323,0 chrI 91173 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0479;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.01;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3248,392,0 chrI 91614 . A G 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=5.523;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.210;QD=19.19;ReadPosRankSum=1.667;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2086,266,0 chrI 91665 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.26;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2987,351,0 chrI 91791 . A C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.376;HaplotypeScore=10.8117;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.711;QD=19.21;ReadPosRankSum=1.668;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3145,395,0 chrI 91938 . A T 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.350;QD=20.89;ReadPosRankSum=1.695;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3970,476,0 chrI 92037 . G C 4037.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.92;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4037,506,0 chrI 92115 . G C 2200 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.13;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2233,275,0 chrI 92310 . G T 1250 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.86;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1283,150,0 chrI 92368 . A T 1851 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.34;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1884,231,0 chrI 92532 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.15;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1408,168,0 chrI 92679 . T C 1574 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.17;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1607,195,0 chrI 92703 . G T 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=4.834;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.287;QD=22.14;ReadPosRankSum=1.485;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1605,192,0 chrI 92722 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.37;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1663,204,0 chrI 92769 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.11;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2044,251,0 chrI 92891 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.59;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3817,458,0 chrI 92934 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.75;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3133,369,0 chrI 92941 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=4.340;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-0.436;QD=17.96;ReadPosRankSum=1.711;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:2997,357,0 chrI 92955 . A G 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=4.117;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-1.516;QD=17.69;ReadPosRankSum=1.667;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:2881,350,0 chrI 92983 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.24;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2670,318,0 chrI 93184 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=21.4961;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.67;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4465,548,0 chrI 93322 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=197;Dels=0.00;FS=2.560;HaplotypeScore=19.3601;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-2.189;QD=18.65;ReadPosRankSum=2.964;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:3674,455,0 chrI 93403 . G A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.7116;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.33;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3923,479,0 chrI 93466 . A G 3057 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.4549;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.20;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3090,389,0 chrI 93563 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.16;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2447,302,0 chrI 93733 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=16.47;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,145:154:99:2569,311,0 chrI 93745 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.1844;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=16.04;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,150:160:99:2600,317,0 chrI 93789 . T A 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.770;QD=16.54;ReadPosRankSum=1.627;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3324,393,0 chrI 93865 . G T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=17.96;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4042,482,0 chrI 94235 . A G 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.090;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.197;QD=20.42;ReadPosRankSum=1.701;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2279,278,0 chrI 94472 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.40;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2128,252,0 chrI 94496 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.515;QD=19.00;ReadPosRankSum=1.701;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2161,263,0 chrI 94550 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.416;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.437;QD=20.94;ReadPosRankSum=1.708;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3007,365,0 chrI 94611 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3050,368,0 chrI 94787 . C A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.94;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3950,470,0 chrI 94863 . A G 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.541;QD=18.49;ReadPosRankSum=1.710;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2936,368,0 chrI 94915 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=174;Dels=0.00;FS=12.091;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.913;QD=22.18;ReadPosRankSum=2.855;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:3860,464,0 chrI 95018 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.79;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3514,431,0 chrI 95043 . A T 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.367;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.451;QD=19.92;ReadPosRankSum=1.711;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3286,395,0 chrI 95055 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.64;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3090,371,0 chrI 95073 . T A 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.807;QD=17.12;ReadPosRankSum=1.711;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:2807,339,0 chrI 95116 . T C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=169;Dels=0.00;FS=9.235;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=0.022;QD=15.34;ReadPosRankSum=2.405;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:2626,323,0 chrI 95139 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=16.56;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2699,324,0 chrI 95155 . A G 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=147;Dels=0.00;FS=4.927;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-0.970;QD=17.21;ReadPosRankSum=3.399;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:4,143:147:99:2563,311,0 chrI 95169 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=18.68;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2574,309,0 chrI 95190 . T C 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=5.932;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.514;QD=17.80;ReadPosRankSum=1.708;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2649,326,0 chrI 95238 . A T 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=142;Dels=0.00;FS=2.705;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.493;QD=20.95;ReadPosRankSum=2.346;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3008,357,0 chrI 95305 . G T 2584 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.71;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2617,317,0 chrI 95327 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.10;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1932,239,0 chrI 95373 . G A 628 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=17.44;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:661,81,0 chrI 95376 . T C 487 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;QD=14.76;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:66:520,66,0 chrI 95388 . A G 374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;MQRankSum=-0.743;QD=13.36;ReadPosRankSum=1.362;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:51:407,51,0 chrI 95391 . T C 410 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=14.64;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:443,57,0 chrI 95412 . G C 770 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=15.10;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:803,99,0 chrI 95448 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.71;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1249,150,0 chrI 95552 . G C 590 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.03;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:78:623,78,0 chrI 95596 . G A 56.51 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=30.9283;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=1.45;SB=-1.035e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:12:89,12,0 chrI 96197 . A G 2553 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.3194;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.10;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2586,317,0 chrI 96598 . C A 2666 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.7888;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.98;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2699,318,0 chrI 97709 . T A 2604 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.67;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2637,318,0 chrI 98419 . A T 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.258;QD=21.59;ReadPosRankSum=1.622;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2062,243,0 chrI 98885 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2171,255,0 chrI 99440 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.52;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3809,461,0 chrI 99471 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=180;Dels=0.00;FS=5.613;HaplotypeScore=10.2162;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.938;QD=19.48;ReadPosRankSum=2.848;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:3506,437,0 chrI 99606 . T A 2942 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=20.72;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2975,357,0 chrI 99916 . A G 1275 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.96;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1308,162,0 chrI 99929 . A G 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.276;QD=17.55;ReadPosRankSum=1.682;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1244,156,0 chrI 100000 . A T 478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=29.1387;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.168;QD=10.39;ReadPosRankSum=2.837;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:4,42:46:63:511,63,0 chrI 100063 . A T 259 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.96;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:36:292,36,0 chrI 100687 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3867,470,0 chrI 100840 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.76;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3509,419,0 chrI 101177 . G C 1436 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=18.65;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1469,180,0 chrI 101193 . T C 1268 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=16.05;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1301,167,0 chrI 101198 . A G 1391 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=17.61;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1424,171,0 chrI 101202 . A G 1187 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=16.04;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1220,147,0 chrI 101230 . C G 560 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=14.00;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:593,75,0 chrI 101336 . T C 664 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=16.20;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:697,90,0 chrI 101371 . A T 1046 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.35;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1079,132,0 chrI 101423 . C A 671 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=17.66;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:87:704,87,0 chrI 101479 . C G 397 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=9.02;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:54:430,54,0 chrI 101482 . C G 323 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=7.69;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:45:356,45,0 chrI 101563 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.73;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1754,207,0 chrI 101607 . A G 1920 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.65;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1953,240,0 chrI 101712 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.05;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1797,216,0 chrI 101991 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.64;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2605,317,0 chrI 102345 . C T 2017 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2050,243,0 chrI 102420 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5386;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.92;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1686,204,0 chrI 102483 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=15.76;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:1845,222,0 chrI 102486 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.6318;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=16.65;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1914,228,0 chrI 102606 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.03;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1822,225,0 chrI 102864 . T A 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=3.141;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.698;QD=18.62;ReadPosRankSum=1.698;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1914,231,0 chrI 103068 . A G 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.000;QD=17.99;ReadPosRankSum=1.694;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1652,209,0 chrI 103110 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.73;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1947,234,0 chrI 103141 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.14;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1865,233,0 chrI 103146 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.35;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1776,221,0 chrI 103307 . G T 2010 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2043,246,0 chrI 103578 . A T 1693 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.20;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1726,207,0 chrI 103632 . A G 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.693;QD=18.51;ReadPosRankSum=1.693;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1680,209,0 chrI 103724 . T C 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.867;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.492;QD=19.43;ReadPosRankSum=1.696;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1898,234,0 chrI 103782 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1807,224,0 chrI 103867 . G A 3026 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.25;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3059,366,0 chrI 103899 . T C 2390 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.08;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2423,302,0 chrI 104042 . T G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.965;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.072;QD=19.69;ReadPosRankSum=1.661;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2928,353,0 chrI 104343 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2509,308,0 chrI 104460 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.549;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.635;QD=20.15;ReadPosRankSum=1.674;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2471,305,0 chrI 104505 . C A 2386 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2419,285,0 chrI 105800 . C A 2888 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2921,348,0 chrI 106581 . T A 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=4.159;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.197;QD=20.41;ReadPosRankSum=1.713;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3775,450,0 chrI 106953 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.44;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2424,288,0 chrI 107001 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.34;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2637,312,0 chrI 107028 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.34;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2636,318,0 chrI 107505 . A G 2769 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2802,341,0 chrI 107538 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3478,414,0 chrI 107850 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0525;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.38;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4205,518,0 chrI 107970 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.672;QD=20.40;ReadPosRankSum=1.712;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3530,440,0 chrI 108108 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.681;QD=19.32;ReadPosRankSum=1.681;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2661,335,0 chrI 108391 . G A 4351.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.7002;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.33;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4351,518,0 chrI 108501 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.871;QD=17.25;ReadPosRankSum=1.694;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3172,386,0 chrI 108943 . T G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.491;QD=19.70;ReadPosRankSum=1.714;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3723,475,0 chrI 108967 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=208;Dels=0.00;FS=7.988;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.389;QD=18.57;ReadPosRankSum=3.662;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:5,202:208:99:3862,473,0 chrI 109720 . A C 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=219;Dels=0.00;FS=6.580;HaplotypeScore=12.9826;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.216;QD=18.64;ReadPosRankSum=2.404;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,215:219:99:4083,515,0 chrI 109735 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=212;Dels=0.00;FS=7.183;HaplotypeScore=11.4867;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.064;QD=18.48;ReadPosRankSum=2.403;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:3917,485,0 chrI 109795 . A G 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=236;Dels=0.00;FS=2.857;HaplotypeScore=12.3719;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.172;QD=17.72;ReadPosRankSum=2.397;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:4183,529,0 chrI 109887 . T C 5538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=277;Dels=0.00;FS=11.465;HaplotypeScore=14.5997;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.567;QD=19.99;ReadPosRankSum=2.937;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:3,269:277:99:5538,686,0 chrI 109984 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.6656;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.17;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4489,542,0 chrI 110014 . T C 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=3.288;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.696;QD=18.69;ReadPosRankSum=1.696;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3663,452,0 chrI 110101 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.2193;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.51;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3624,434,0 chrI 110131 . T C 3152 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.95;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3185,389,0 chrI 110146 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.95;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3026,357,0 chrI 110200 . T G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=158;Dels=0.00;FS=8.753;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.376;QD=17.68;ReadPosRankSum=2.341;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2827,350,0 chrI 110595 . A G 1755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=94;Dels=0.00;FS=5.786;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.753;QD=18.67;ReadPosRankSum=2.904;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1788,222,0 chrI 110796 . A G 2610 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=1;QD=22.50;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2643,323,0 chrI 110856 . T C 2277 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6579;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.32;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2310,287,0 chrI 110981 . C G 3367.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.69;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3367,410,0 chrI 111180 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.7474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.232;QD=20.06;ReadPosRankSum=1.699;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4213,521,0 chrI 111245 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.571;QD=20.59;ReadPosRankSum=1.713;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3748,461,0 chrI 111401 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=211;Dels=0.00;FS=2.916;HaplotypeScore=15.6057;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.348;QD=18.97;ReadPosRankSum=2.213;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4002,479,0 chrI 111623 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.87;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3735,438,0 chrI 111655 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.86;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3760,446,0 chrI 111719 . G A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.6226;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.55;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4267,515,0 chrI 111983 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.13;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3234,384,0 chrI 112049 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.87;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2835,341,0 chrI 112136 . G T 2459 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.21;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2492,300,0 chrI 112232 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.27;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3446,422,0 chrI 112339 . A G 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=216;Dels=0.00;FS=4.833;HaplotypeScore=15.1887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.187;QD=20.93;ReadPosRankSum=1.716;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4521,551,0 chrI 112373 . C G 4984.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=12.7678;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.26;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4984,620,0 chrI 112433 . A G 4803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=248;Dels=0.00;FS=3.610;HaplotypeScore=10.3346;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.014;QD=19.37;ReadPosRankSum=1.704;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:4803,590,0 chrI 112808 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=24.6471;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.98;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:3793,450,0 chrI 113207 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.014;DP=232;Dels=0.00;FS=15.061;HaplotypeScore=19.2294;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.306;QD=17.82;ReadPosRankSum=4.175;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:6,225:232:99:4134,523,0 chrI 113326 . C G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.1556;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.49;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:3918,476,0 chrI 113789 . G A 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.9728;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.444;QD=20.34;ReadPosRankSum=0.503;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:1,233:238:99:4842,578,0 chrI 113812 . G T 5842.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=15.2828;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.43;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:5842,707,0 chrI 113857 . G C 6811.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=23.7039;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.33;SB=-3.213e+03 GT:AD:DP:GQ:PL 1/1:0,333:335:99:6811,832,0 chrI 114070 . T C 5637.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=20.3281;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=17.62;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,317:320:99:5637,706,0 chrI 114102 . C T 5498.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=26.0333;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.09;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:5498,659,0 chrI 114133 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=281;Dels=0.00;FS=6.580;HaplotypeScore=8.6934;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.904;QD=16.40;ReadPosRankSum=2.388;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:2,279:281:99:4608,572,0 chrI 114148 . T G 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=280;Dels=0.00;FS=3.016;HaplotypeScore=10.2429;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-2.148;QD=16.15;ReadPosRankSum=2.414;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:2,275:280:99:4522,563,0 chrI 114227 . T C 6094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=325;Dels=0.00;FS=2.943;HaplotypeScore=19.2870;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.697;QD=18.75;ReadPosRankSum=2.434;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:2,321:325:99:6094,749,0 chrI 114258 . G C 6265.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=25.4168;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.65;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,332:336:99:6265,758,0 chrI 114628 . G T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.9225;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.10;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:4506,536,0 chrI 114652 . C T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.70;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4389,521,0 chrI 114824 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=204.9771;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.00;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4200,500,0 chrI 114884 . A G 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=2.824;HaplotypeScore=11.6589;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.241;QD=16.80;ReadPosRankSum=2.423;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3141,386,0 chrI 114928 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.43;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2835,344,0 chrI 115167 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.26;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2910,351,0 chrI 115335 . A G 2996 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2132;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.84;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3029,374,0 chrI 115494 . T C 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=249;Dels=0.00;FS=2.915;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.321;QD=19.76;ReadPosRankSum=2.400;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:4921,611,0 chrI 115512 . G C 4394.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.6057;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.54;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4394,536,0 chrI 115590 . G C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.4900;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.77;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3440,422,0 chrI 115606 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.29;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3588,443,0 chrI 115659 . A C 4212.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.7367;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.68;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4212,524,0 chrI 115785 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.79;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3081,369,0 chrI 115906 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.73;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:3610,426,0 chrI 115921 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.39;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3549,428,0 chrI 116178 . T A 4618.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.2062;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.99;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4618,548,0 chrI 116327 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=219;Dels=0.00;FS=3.408;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=-1.413;QD=16.38;ReadPosRankSum=1.716;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:3588,440,0 chrI 116334 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=15.16;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:3231,395,0 chrI 116457 . C A 3173 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.9891;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=17.06;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3206,386,0 chrI 116526 . T C 2441 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=14.27;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2474,308,0 chrI 116548 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=2.668;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=1.919;QD=15.05;ReadPosRankSum=2.422;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:2682,326,0 chrI 117393 . A T 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=184;Dels=0.00;FS=2.522;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.989;QD=19.58;ReadPosRankSum=2.648;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3603,426,0 chrI 117504 . A C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.386;QD=19.86;ReadPosRankSum=1.703;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2416,299,0 chrI 117528 . A G 2173 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.06;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2206,281,0 chrI 117940 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.28;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2033,243,0 chrI 118092 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.26;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2059,246,0 chrI 118122 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.35;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1484,183,0 chrI 118143 . T C 1304 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.18;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1337,165,0 chrI 118606 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1622,206,0 chrI 118653 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1721,207,0 chrI 118822 . T C 2308 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2341,290,0 chrI 118997 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.2832;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.78;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2069,257,0 chrI 119149 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.34;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3012,368,0 chrI 119350 . A G 4476.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.42;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4476,565,0 chrI 119381 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.04;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4231,503,0 chrI 119642 . C T 699 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=17.47;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:84:732,84,0 chrI 119762 . C T 1192 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.62;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1225,147,0 chrI 119777 . A G 935 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.5928;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=16.12;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:968,123,0 chrI 120061 . C G 2218 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.73;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2251,278,0 chrI 120085 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.96;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2213,272,0 chrI 120115 . C T 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-1.280;QD=17.35;ReadPosRankSum=1.401;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2046,243,0 chrI 120118 . T C 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=121;Dels=0.01;FS=5.541;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=1.009;QD=16.36;ReadPosRankSum=2.908;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2012,248,0 chrI 120277 . A G 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.046;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.493;QD=19.47;ReadPosRankSum=1.507;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2428,302,0 chrI 120347 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.53;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3628,437,0 chrI 120378 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.96;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3493,414,0 chrI 120405 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6465;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.00;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3320,398,0 chrI 120485 . A G 2241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=3.315;HaplotypeScore=12.2544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.411;QD=18.99;ReadPosRankSum=1.703;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2274,281,0 chrI 120740 . T C 2299 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.35;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2332,287,0 chrI 120818 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2098,257,0 chrI 120895 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.5438;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.00;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2153,264,0 chrI 120925 . C A 2258 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.30;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2291,279,0 chrI 121322 . C T 2279 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.10;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2312,279,0 chrI 121421 . A G 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.763;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.748;QD=21.99;ReadPosRankSum=1.693;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1968,251,0 chrI 121453 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.85;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2097,249,0 chrI 121589 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.81;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2232,275,0 chrI 121730 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.41;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2584,317,0 chrI 121824 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.4362;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.59;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2776,330,0 chrI 121832 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.21;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2703,327,0 chrI 121901 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=16.12;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2048,246,0 chrI 121907 . G A 2009 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=16.33;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2042,246,0 chrI 121957 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.56;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3056,366,0 chrI 122033 . T G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.486;QD=18.79;ReadPosRankSum=1.687;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2945,371,0 chrI 122045 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.057;QD=18.65;ReadPosRankSum=1.709;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2886,359,0 chrI 122147 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=18.76;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3110,363,0 chrI 122159 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=17.79;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2702,332,0 chrI 122191 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=17.91;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2899,348,0 chrI 122202 . T A 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=4.269;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.542;QD=17.14;ReadPosRankSum=1.668;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2861,342,0 chrI 122298 . G T 3111 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.4542;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.88;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3144,383,0 chrI 122390 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.28;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2122,263,0 chrI 122451 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=17.96;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2170,266,0 chrI 122846 . G C 2234 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.77;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2267,281,0 chrI 123074 . A G 2576 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.02;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2609,317,0 chrI 123140 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.63;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2542,311,0 chrI 123368 . A G 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.705;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.320;QD=17.31;ReadPosRankSum=1.626;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2283,287,0 chrI 123374 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=17.10;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2153,258,0 chrI 123380 . A G 1889 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=15.48;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1922,239,0 chrI 123428 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6785;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=15.30;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1670,207,0 chrI 123785 . A C 2267 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.99;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2300,290,0 chrI 123842 . A G 2374 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.01;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2407,296,0 chrI 123890 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2478,297,0 chrI 124001 . A G 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.163;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.045;QD=20.65;ReadPosRankSum=1.702;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2449,308,0 chrI 124034 . T A 2734 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.70;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2767,333,0 chrI 124181 . T C 2738 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.39;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2771,347,0 chrI 124373 . T C 1465 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.28;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1498,186,0 chrI 124424 . T C 1265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=78;Dels=0.00;FS=15.855;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=2.229;QD=16.22;ReadPosRankSum=2.323;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1298,159,0 chrI 124539 . G T 956 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.92;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:989,120,0 chrI 124567 . T G 1510 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=17.56;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1543,189,0 chrI 124583 . A G 1906 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.02;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,108:112:99:1939,239,0 chrI 124629 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.66;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2346,282,0 chrI 124665 . A C 1777 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=14.45;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1810,216,0 chrI 124668 . A T 2021 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.04;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2054,249,0 chrI 124671 . A G 1780 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=14.96;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,116:119:99:1813,222,0 chrI 124719 . A C 2865 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.60;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2898,362,0 chrI 124872 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.41;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4732,563,0 chrI 124972 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.5611;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.63;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:3632,443,0 chrI 125133 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.599;QD=20.17;ReadPosRankSum=1.711;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3287,410,0 chrI 125158 . G T 2786 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.48;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2819,330,0 chrI 125277 . A G 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.256;DP=115;Dels=0.00;FS=6.457;HaplotypeScore=9.8979;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.190;QD=18.08;ReadPosRankSum=-0.527;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2112,236,0 chrI 125286 . A G 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=112;Dels=0.00;FS=3.443;HaplotypeScore=4.3281;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.780;QD=17.86;ReadPosRankSum=1.175;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2033,238,0 chrI 125419 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.42;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1606,198,0 chrI 125610 . G A 1953 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=21.00;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1986,237,0 chrI 125616 . C T 1889 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.88;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1922,231,0 chrI 125619 . T C 1909 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=3.026;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-0.641;QD=19.48;ReadPosRankSum=2.400;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1942,237,0 chrI 125793 . A T 2574 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.59;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2607,315,0 chrI 125895 . T C 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=4.042;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.000;QD=18.88;ReadPosRankSum=1.666;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2015,257,0 chrI 126258 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.54;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2369,282,0 chrI 126267 . T A 2274 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.05;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2307,276,0 chrI 126462 . A G 2218 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.64;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2251,278,0 chrI 126468 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=16.94;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2167,266,0 chrI 126483 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=16.38;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2048,246,0 chrI 126501 . T C 2022 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=13.85;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2055,257,0 chrI 126553 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.665;QD=16.82;ReadPosRankSum=1.688;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2657,326,0 chrI 126600 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.02;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2736,327,0 chrI 126897 . C T 461 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.07;MQ0=0;QD=6.88;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:2,63:66:60:494,60,0 chrI 126902 . C G 569 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=9.33;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:75:602,75,0 chrI 127038 . T C 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.425;QD=19.85;ReadPosRankSum=1.699;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2157,263,0 chrI 127062 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.54;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2087,246,0 chrI 127101 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.9801;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.64;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2046,246,0 chrI 127227 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.57;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3016,371,0 chrI 127274 . C G 2968 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.35;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3001,362,0 chrI 127533 . G A 4421.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.5045;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.91;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,217:222:99:4421,539,0 chrI 127572 . G A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.7035;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.40;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4692,569,0 chrI 127764 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.27;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4216,509,0 chrI 127854 . G T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.48;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4169,515,0 chrI 127871 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.04;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3808,450,0 chrI 127875 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.68;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3474,428,0 chrI 128137 . G A 372 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=9.54;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:48:405,48,0 chrI 128270 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.14;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1491,183,0 chrI 128423 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.1680;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=1;QD=21.53;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3220,392,0 chrI 128455 . G T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.1408;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=1;QD=22.10;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4288,509,0 chrI 128697 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=3.749;HaplotypeScore=13.6827;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=1;MQRankSum=1.190;QD=18.10;ReadPosRankSum=1.683;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:3855,473,0 chrI 128756 . T G 3421.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.0303;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=1;QD=18.01;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3421,425,0 chrI 128774 . G A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.8601;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=1;QD=18.47;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4026,474,0 chrI 128843 . T C 4884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=256;Dels=0.00;FS=3.025;HaplotypeScore=22.2678;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.560;QD=19.08;ReadPosRankSum=2.430;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:2,251:256:99:4884,590,0 chrI 129075 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.1815;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.28;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3401,407,0 chrI 129471 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=218;Dels=0.00;FS=2.952;HaplotypeScore=9.3474;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.759;QD=17.98;ReadPosRankSum=2.358;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,213:218:99:3920,488,0 chrI 129476 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=217;Dels=0.00;FS=10.840;HaplotypeScore=9.3908;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.792;QD=17.44;ReadPosRankSum=2.921;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:3785,467,0 chrI 129517 . T C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=18.3610;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.448;QD=16.38;ReadPosRankSum=1.693;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:2949,362,0 chrI 129629 . T C 5873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=304;Dels=0.00;FS=3.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.154;QD=19.32;ReadPosRankSum=2.433;SB=-3.285e+03 GT:AD:DP:GQ:PL 1/1:2,301:304:99:5873,727,0 chrI 129656 . C T 4974.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=2.5528;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=16.36;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:0,300:304:99:4974,614,0 chrI 129661 . A G 5025.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=16.92;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:5025,614,0 chrI 129693 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=28.9254;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=14.27;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:3697,435,0 chrI 129731 . T C 3659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=240;Dels=0.00;FS=5.885;HaplotypeScore=21.8317;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.130;QD=15.25;ReadPosRankSum=2.971;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:3,236:240:99:3659,458,0 chrI 130254 . T C 3156 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.8512;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3189,401,0 chrI 130454 . A G 2394 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.87;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2427,296,0 chrI 130691 . G T 2227 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.41;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2260,276,0 chrI 130918 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.401;QD=20.05;ReadPosRankSum=1.713;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3609,443,0 chrI 130951 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.00;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3325,404,0 chrI 131590 . C T 5844.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=5.7396;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.55;SB=-3.562e+03 GT:AD:DP:GQ:PL 1/1:0,312:315:99:5844,704,0 chrI 131595 . A T 5871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=321;Dels=0.00;FS=3.275;HaplotypeScore=5.4924;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.103;QD=18.29;ReadPosRankSum=1.700;SB=-3.669e+03 GT:AD:DP:GQ:PL 1/1:1,320:321:99:5871,692,0 chrI 131635 . T C 4942.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=22.7481;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=16.42;SB=-3.067e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:4942,614,0 chrI 132005 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4504;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.43;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2282,270,0 chrI 132426 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.33;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2856,353,0 chrI 132468 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.75;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2600,320,0 chrI 132552 . T C 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=118;Dels=0.00;FS=2.967;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.719;QD=18.94;ReadPosRankSum=2.408;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2268,278,0 chrI 132714 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.41;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2979,359,0 chrI 132723 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.8704;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.62;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3172,375,0 chrI 132831 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.644;QD=19.70;ReadPosRankSum=2.316;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2929,356,0 chrI 133080 . A G 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.616;QD=18.19;ReadPosRankSum=0.115;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1670,185,0 chrI 133083 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.10;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1698,204,0 chrI 133134 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=17.26;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1811,219,0 chrI 133640 . A G 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.315;QD=19.15;ReadPosRankSum=1.701;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2140,266,0 chrI 133749 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.3719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1941,234,0 chrI 133857 . G A 2096 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2129,252,0 chrI 134089 . C A 1679 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.25;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1712,204,0 chrI 134185 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2464,297,0 chrI 134414 . A G 2970 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.77;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3003,374,0 chrI 134475 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=114;Dels=0.00;FS=2.870;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.577;QD=20.73;ReadPosRankSum=2.406;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2396,296,0 chrI 134520 . T C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.621;QD=16.74;ReadPosRankSum=1.704;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2142,263,0 chrI 134531 . A G 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.946;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.356;QD=17.16;ReadPosRankSum=1.705;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2264,278,0 chrI 134587 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.39;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2520,303,0 chrI 134604 . A G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.075;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.044;QD=19.19;ReadPosRankSum=1.707;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2643,329,0 chrI 135156 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.142;DP=160;Dels=0.00;FS=3.263;HaplotypeScore=12.9038;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.645;QD=20.91;ReadPosRankSum=1.689;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3345,383,0 chrI 135222 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.68;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3241,386,0 chrI 135325 . G C 3181 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.6721;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.26;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3214,398,0 chrI 135417 . T A 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=8.107;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.413;QD=21.40;ReadPosRankSum=2.395;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2900,348,0 chrI 135827 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.3028;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.48;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2888,342,0 chrI 135952 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2157,261,0 chrI 136160 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2721,327,0 chrI 136576 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.16;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1317,162,0 chrI 136961 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=168;Dels=0.00;FS=2.634;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.426;QD=20.43;ReadPosRankSum=2.391;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3432,425,0 chrI 137167 . C A 4563.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.16;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4563,545,0 chrI 137237 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.60;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3358,413,0 chrI 137264 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=6.869;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.581;QD=21.53;ReadPosRankSum=2.420;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3617,443,0 chrI 137336 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.61;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3319,410,0 chrI 137794 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.093;QD=21.42;ReadPosRankSum=1.705;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2818,350,0 chrI 138075 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.7941;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.28;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2462,299,0 chrI 138340 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.02;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3096,377,0 chrI 138422 . T A 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=7.469;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=2.035;QD=21.44;ReadPosRankSum=2.404;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3430,410,0 chrI 138499 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=22.03;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2368,282,0 chrI 138591 . A G 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-1.155;QD=18.55;ReadPosRankSum=1.641;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2148,258,0 chrI 138650 . A G 1093 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=17.08;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1126,141,0 chrI 138655 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=16.06;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1157,138,0 chrI 138666 . A G 908 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=14.65;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:941,117,0 chrI 138667 . A G 910 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=14.44;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:943,117,0 chrI 138668 . T G 920 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=14.37;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:953,117,0 chrI 138669 . T C 934 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=7.539;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;MQRankSum=-2.338;QD=14.15;ReadPosRankSum=2.375;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:967,117,0 chrI 138711 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=17.21;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1754,210,0 chrI 138770 . A G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.445;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;MQRankSum=-1.072;QD=13.75;ReadPosRankSum=1.691;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1188,147,0 chrI 138780 . C T 922 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=12.81;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:955,117,0 chrI 138785 . C T 801 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;QD=12.14;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:834,102,0 chrI 138791 . T C 597 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=1.412;QD=11.06;ReadPosRankSum=1.604;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:78:630,78,0 chrI 138793 . T C 634 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;MQRankSum=0.334;QD=11.12;ReadPosRankSum=1.611;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:81:667,81,0 chrI 138806 . A T 632 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=12.39;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:81:665,81,0 chrI 138807 . G A 676 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=13.00;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:709,87,0 chrI 138824 . T C 790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;MQRankSum=-1.291;QD=14.36;ReadPosRankSum=1.669;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:823,102,0 chrI 138946 . A G 1960 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=19.80;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1993,248,0 chrI 139045 . C G 711 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=17.77;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:744,93,0 chrI 139049 . T G 668 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=16.29;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:90:701,90,0 chrI 139055 . G A 734 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=17.07;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:767,93,0 chrI 139123 . T C 869 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;MQRankSum=-1.529;QD=16.71;ReadPosRankSum=1.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,50:51:99:902,111,0 chrI 139132 . A T 834 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=10.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:76:99:867,105,0 chrI 139277 . T C 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;DP=31;Dels=0.03;FS=15.835;HaplotypeScore=48.8028;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=1;MQRankSum=1.678;QD=1.35;ReadPosRankSum=-2.105;SB=2.03 GT:AD:DP:GQ:PL 1/1:26,4:30:9:74,9,0 chrI 139293 . C T 523 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=1;QD=14.53;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:556,69,0 chrI 139374 . T C 884 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=15.79;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:917,111,0 chrI 139692 . G A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=20.14;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4148,509,0 chrI 140346 . T A 1275.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.376;DP=220;Dels=0.00;FS=145.232;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=106;MQRankSum=5.563;QD=5.80;ReadPosRankSum=3.633;SB=-1.913e+01 GT:AD:DP:GQ:PL 1/1:78,142:220:5:1306,5,0 chrI 140397 . T C 275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.727;DP=194;Dels=0.00;FS=10.566;HaplotypeScore=8.8968;MLEAC=1;MLEAF=0.500;MQ=24.66;MQ0=61;MQRankSum=-5.483;QD=1.42;ReadPosRankSum=-2.633;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:134,60:194:99:305,0,1626 chrI 140418 . G A 3454.01 filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.9241;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=42;QD=15.99;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:3454,416,0 chrI 141030 . T A 2275 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=1;QD=23.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2308,276,0 chrI 141135 . A T 4722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=6.361;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=2;MQRankSum=1.716;QD=22.07;ReadPosRankSum=1.699;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4722,572,0 chrI 141184 . G C 6166.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=8.2773;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=1;QD=20.69;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:6166,757,0 chrI 141564 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.96;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2213,267,0 chrI 141984 . T C 1378 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.62;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1411,177,0 chrI 142166 . C A 2026 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.26;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2059,249,0 chrI 143085 . T C 2629 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.91;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2662,338,0 chrI 143638 . C A 2452 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.26;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2485,300,0 chrI 143679 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.91;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2761,338,0 chrI 143766 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=17.45;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2005,246,0 chrI 143781 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=16.36;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1914,228,0 chrI 143848 . C T 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=1.598;QD=16.54;ReadPosRankSum=2.122;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2531,303,0 chrI 143852 . T C 2486 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=9.3565;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=15.94;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2519,317,0 chrI 144180 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3812,461,0 chrI 144826 . C G 1968 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.49;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2001,248,0 chrI 145627 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=16.87;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1737,210,0 chrI 145634 . T C 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.980;QD=16.92;ReadPosRankSum=1.634;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1827,230,0 chrI 146242 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.24;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1308,156,0 chrI 147051 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2083,249,0 chrI 147507 . G T 951 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.41;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:984,120,0 chrI 147607 . T A 2096 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2129,252,0 chrI 147655 . G C 2324 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2357,296,0 chrI 147726 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.04;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2475,302,0 chrI 147759 . T A 2726 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.53;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2759,327,0 chrI 147795 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=3.032;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.734;QD=20.32;ReadPosRankSum=2.408;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2451,308,0 chrI 147885 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=16.6927;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.98;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3154,372,0 chrI 148146 . A T 2250 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2283,273,0 chrI 148596 . A G 2221 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2254,278,0 chrI 148818 . A G 2508 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2541,314,0 chrI 148886 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2587,309,0 chrI 149187 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.657;QD=19.93;ReadPosRankSum=1.707;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2783,347,0 chrI 149307 . T C 2686 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2719,338,0 chrI 149594 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=3.286;HaplotypeScore=14.9915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.906;QD=19.21;ReadPosRankSum=1.705;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2550,309,0 chrI 149773 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.3832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2106,252,0 chrI 149913 . C A 2654 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2687,326,0 chrI 149973 . A G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=107;Dels=0.00;FS=7.198;HaplotypeScore=5.9098;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.058;QD=21.04;ReadPosRankSum=2.404;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2284,279,0 chrI 150303 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.33;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2353,285,0 chrI 150753 . A G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=3.610;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.279;QD=21.32;ReadPosRankSum=1.676;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2677,326,0 chrI 150921 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2931,354,0 chrI 151010 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.17;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3230,389,0 chrI 151122 . A G 2870 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.13;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2903,365,0 chrI 151198 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.52;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2015,243,0 chrI 151332 . A C 943 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.110;QD=16.84;ReadPosRankSum=2.362;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,54:56:99:976,120,0 chrI 151380 . G A 415 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.60;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:54:448,54,0 chrI 151415 . T C 435 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.12;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:57:468,57,0 chrI 151521 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=3.76;SB=-2.580e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:50,6,0 chrI 151526 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=8.59;SB=-2.647e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrI 151577 . A C 603 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=17.74;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:81:636,81,0 chrI 151763 . T C 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.549;QD=22.87;ReadPosRankSum=1.690;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1908,239,0 chrI 151847 . A G 2243 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.99;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2276,278,0 chrI 152004 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.71;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1379,174,0 chrI 152045 . A G 947 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=15.52;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:980,117,0 chrI 152125 . G T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;DP=77;Dels=0.00;FS=55.483;HaplotypeScore=30.3057;MLEAC=1;MLEAF=0.500;MQ=55.30;MQ0=0;MQRankSum=2.104;QD=0.52;ReadPosRankSum=-1.882;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,29:77:70:70,0,152 chrI 152155 . A G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=88;Dels=0.00;FS=5.521;HaplotypeScore=14.6729;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.084;QD=16.45;ReadPosRankSum=1.690;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,82:88:99:1481,183,0 chrI 152274 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.80;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2082,255,0 chrI 152336 . A G 2516 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.81;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2549,323,0 chrI 152728 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.52;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3218,381,0 chrI 152749 . G C 2695 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.96;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2728,338,0 chrI 152932 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.60;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3758,464,0 chrI 153110 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3554,425,0 chrI 153235 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=169;Dels=0.00;FS=6.099;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.316;QD=19.93;ReadPosRankSum=2.420;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3368,416,0 chrI 153399 . C T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.33;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4329,518,0 chrI 153564 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.10;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3650,435,0 chrI 153762 . A C 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=156;Dels=0.00;FS=3.586;HaplotypeScore=5.8692;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.211;QD=19.43;ReadPosRankSum=1.687;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3064,380,0 chrI 153783 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.376;QD=19.36;ReadPosRankSum=1.708;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2860,353,0 chrI 154086 . A G 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=87;Dels=0.00;FS=5.093;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.907;QD=16.80;ReadPosRankSum=1.650;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,83:87:99:1495,191,0 chrI 154766 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.19;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2237,267,0 chrI 154963 . C G 2657 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.26;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2690,344,0 chrI 155428 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.07;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3709,452,0 chrI 156293 . T A 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=4.145;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.060;QD=20.40;ReadPosRankSum=1.712;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3549,423,0 chrI 156314 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=178;Dels=0.00;FS=10.199;HaplotypeScore=17.0596;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.486;QD=18.84;ReadPosRankSum=2.926;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:3,173:178:99:3354,419,0 chrI 156355 . A G 3197 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.8355;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.81;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3230,395,0 chrI 156469 . G T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=26.1673;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.59;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3315,404,0 chrI 156552 . T C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.559;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.380;QD=20.45;ReadPosRankSum=1.703;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2467,308,0 chrI 156651 . A G 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.057;QD=19.31;ReadPosRankSum=1.710;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,153:158:99:3084,383,0 chrI 156676 . A C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.577;QD=19.23;ReadPosRankSum=1.689;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3148,395,0 chrI 156949 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=3.095;HaplotypeScore=7.4317;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.278;QD=19.80;ReadPosRankSum=1.698;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4079,503,0 chrI 157114 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.12;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3884,482,0 chrI 157134 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.76;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3945,468,0 chrI 157174 . T G 2837 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.30;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2870,362,0 chrI 157339 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.38;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2494,300,0 chrI 157428 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.02;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2785,330,0 chrI 157504 . A T 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.732;QD=21.79;ReadPosRankSum=1.675;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2670,318,0 chrI 157672 . G C 2116 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=16.66;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2149,266,0 chrI 157675 . G A 2048 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=15.88;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2081,255,0 chrI 157912 . C G 2533 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.48;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2566,326,0 chrI 157993 . A G 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.448;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.403;QD=19.32;ReadPosRankSum=1.685;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:2911,353,0 chrI 158089 . A G 2603 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1305;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.82;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2636,329,0 chrI 158494 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.08;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3594,440,0 chrI 158597 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.37;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3382,405,0 chrI 158641 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.25;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3527,425,0 chrI 158843 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=153;Dels=0.00;FS=5.901;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.447;QD=19.64;ReadPosRankSum=2.887;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:4,148:153:99:3038,371,0 chrI 158870 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=167;Dels=0.00;FS=7.050;HaplotypeScore=8.7210;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.303;QD=20.23;ReadPosRankSum=2.376;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3378,413,0 chrI 158971 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3317,416,0 chrI 159086 . T C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=3.039;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.619;QD=19.85;ReadPosRankSum=2.382;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2911,353,0 chrI 159100 . A T 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.860;QD=19.88;ReadPosRankSum=1.709;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3035,365,0 chrI 159225 . A C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=2.929;HaplotypeScore=10.6888;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.624;QD=19.99;ReadPosRankSum=2.395;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2752,341,0 chrI 159798 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4459;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1931,234,0 chrI 159842 . T A 1512 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1545,183,0 chrI 160002 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=21.46;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1857,228,0 chrI 160234 . G A 121.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=1;QD=17.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:18:154,18,0 chrI 160338 . A T 347 filter AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.74;MQ0=166;QD=1.82;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:166,25:191:45:380,45,0 chrI 160348 . T A 312 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.90;MQ0=178;QD=1.59;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:178,18:196:42:345,42,0 chrI 160349 . C T 309 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.92;MQ0=177;QD=1.58;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:176,19:195:42:342,42,0 chrI 160354 . T G 179.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.90;MQ0=181;QD=0.92;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:181,14:195:27:212,27,0 chrI 160362 . A G 58.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.44;MQ0=191;MQRankSum=-0.751;QD=0.29;ReadPosRankSum=0.751;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:190,8:200:12:91,12,0 chrI 160365 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.95;MQ0=191;QD=0.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:191,2:193:6:49,6,0 chrI 166245 . A T 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=4.645;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=0.154;QD=20.20;ReadPosRankSum=1.712;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3414,407,0 chrI 166369 . T C 3110 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=20.19;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3143,386,0 chrI 166429 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=30.4979;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=16.60;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2954,365,0 chrI 166443 . G C 2959 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3516;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=17.01;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:2992,365,0 chrI 166571 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.47;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2756,332,0 chrI 166733 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=5.208;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.739;QD=21.00;ReadPosRankSum=1.656;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2910,356,0 chrI 166767 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.035;QD=20.90;ReadPosRankSum=1.686;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3147,386,0 chrI 166820 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.02;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2785,341,0 chrI 166848 . G C 2374 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.72;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:2407,296,0 chrI 166865 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.21;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2580,314,0 chrI 166931 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.00;FS=2.955;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.538;QD=19.25;ReadPosRankSum=2.399;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:3735,461,0 chrI 167064 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1213;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.89;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2967,354,0 chrI 167070 . C G 2810 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4503;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=16.93;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:2843,341,0 chrI 167179 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4894;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.85;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3357,425,0 chrI 168203 . A T 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.230;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.069;QD=20.06;ReadPosRankSum=1.668;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3270,392,0 chrI 168413 . C A 2871 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2904,342,0 chrI 169476 . T C 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=200;Dels=0.00;FS=3.004;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.104;QD=21.56;ReadPosRankSum=2.364;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4312,530,0 chrI 169638 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=207;Dels=0.00;FS=12.974;HaplotypeScore=18.4991;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.064;QD=18.31;ReadPosRankSum=2.907;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:3,201:207:99:3790,461,0 chrI 169689 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.15;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3389,405,0 chrI 170321 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.35;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2861,339,0 chrI 170726 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.51;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2946,359,0 chrI 170945 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.3973;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.09;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3515,434,0 chrI 171254 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.06;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2092,255,0 chrI 171389 . A G 2040 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.2337;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.81;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2073,257,0 chrI 171975 . A G 1453 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.39;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1486,188,0 chrI 172113 . C A 1804 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.50;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1837,219,0 chrI 172129 . A T 1676 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.26;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1709,207,0 chrI 172585 . A T 2601 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2634,320,0 chrI 173222 . A C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-0.654;QD=20.56;ReadPosRankSum=1.709;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3137,389,0 chrI 173245 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.84;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3516,417,0 chrI 173375 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=3.050;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-1.727;QD=20.07;ReadPosRankSum=2.405;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2221,270,0 chrI 173405 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=17.63;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1884,219,0 chrI 173438 . G C 1512 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2159;MLEAC=2;MLEAF=1.00;MQ=38.31;MQ0=0;QD=12.81;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1545,189,0 chrI 173441 . C T 1439 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3838;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;QD=12.51;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1472,174,0 chrI 173447 . G A 1386 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=11.95;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1419,174,0 chrI 173462 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.2000;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=13.30;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1563,189,0 chrI 173498 . T G 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=8.456;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-1.622;QD=17.16;ReadPosRankSum=2.406;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1972,240,0 chrI 173528 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.25;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2342,282,0 chrI 173642 . C A 2325 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=22.14;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2358,282,0 chrI 173942 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.6289;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.25;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3719,443,0 chrI 174371 . T C 3107 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3140,380,0 chrI 174484 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.4263;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.499;QD=17.49;ReadPosRankSum=1.714;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3359,428,0 chrI 174727 . A G 3135 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=17.04;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3168,386,0 chrI 174746 . T G 2913 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=17.14;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:2946,362,0 chrI 174827 . A G 2679 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2712,335,0 chrI 175318 . C G 4501.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.28;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4501,542,0 chrI 175444 . C T 4681.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.18;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4681,552,0 chrI 175532 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.75;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3549,420,0 chrI 175573 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.86;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3738,449,0 chrI 175876 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.60;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1588,189,0 chrI 175963 . A G 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.400;QD=19.28;ReadPosRankSum=1.685;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1460,180,0 chrI 176001 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.42;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1618,198,0 chrI 176015 . T C 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.477;QD=19.72;ReadPosRankSum=1.582;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1433,174,0 chrI 176220 . T C 1638 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.73;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1671,209,0 chrI 176266 . A T 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=3.378;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.170;QD=18.59;ReadPosRankSum=1.685;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1409,168,0 chrI 176274 . A T 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.525;QD=17.88;ReadPosRankSum=1.627;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1213,150,0 chrI 176431 . A G 812 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.92;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:845,105,0 chrI 176694 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=2;QD=22.03;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1950,245,0 chrI 176721 . G A 1348 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=5;QD=18.22;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1381,171,0 chrI 176858 . A G 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.442;QD=20.92;ReadPosRankSum=1.702;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,230:233:99:4875,605,0 chrI 176948 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=1;QD=21.93;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3750,455,0 chrI 177206 . T C 2815 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.93;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2848,344,0 chrI 177217 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=156;Dels=0.00;FS=12.328;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.886;QD=18.08;ReadPosRankSum=3.402;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:4,151:156:99:2854,347,0 chrI 177450 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.14;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3276,390,0 chrI 177667 . T C 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=3.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.801;QD=19.50;ReadPosRankSum=2.373;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3192,395,0 chrI 177875 . C A 2881 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.43;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2914,353,0 chrI 178009 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.82;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2545,308,0 chrI 178028 . C T 2464 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.86;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2497,303,0 chrI 178204 . C G 2953 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.95;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2986,368,0 chrI 178224 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.93;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2702,335,0 chrI 178270 . A C 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=5.599;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=1.584;QD=19.14;ReadPosRankSum=2.947;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2578,317,0 chrI 178448 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6185;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=12.30;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1423,171,0 chrI 178541 . A G 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=4.523;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.204;QD=18.80;ReadPosRankSum=1.712;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3229,415,0 chrI 178563 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.45;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3618,452,0 chrI 178802 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=184;Dels=0.00;FS=5.979;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=1.280;QD=19.75;ReadPosRankSum=2.951;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3634,443,0 chrI 178905 . G T 2936 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.25;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2969,359,0 chrI 178989 . A T 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.045;QD=18.25;ReadPosRankSum=1.705;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2387,290,0 chrI 179051 . A G 1676 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=3.038;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.825;QD=16.76;ReadPosRankSum=2.351;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1709,213,0 chrI 179052 . A G 1700 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=3.038;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.357;QD=17.00;ReadPosRankSum=2.401;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1733,210,0 chrI 179055 . T C 1751 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.00;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1784,221,0 chrI 179149 . G C 1441 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=15.49;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1474,188,0 chrI 179221 . A G 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.310;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.616;QD=15.74;ReadPosRankSum=1.694;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1450,185,0 chrI 179402 . T C 2191 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.56;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2224,272,0 chrI 179588 . A G 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=8.323;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.373;QD=20.30;ReadPosRankSum=2.385;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3139,386,0 chrI 179610 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.84;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2791,330,0 chrI 179706 . C G 4060.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4245;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.19;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4060,497,0 chrI 179796 . A C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.99;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3547,443,0 chrI 179823 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=183;Dels=0.00;FS=6.538;HaplotypeScore=14.3285;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.869;QD=20.23;ReadPosRankSum=2.396;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3702,458,0 chrI 179877 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.8702;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.61;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3413,416,0 chrI 179942 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=13.4810;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=17.37;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2864,339,0 chrI 179951 . A G 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=163;Dels=0.01;FS=2.583;HaplotypeScore=9.1788;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-2.519;QD=15.55;ReadPosRankSum=2.906;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:2567,314,0 chrI 179996 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=14.50;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:1976,243,0 chrI 180049 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=19.96;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3268,390,0 chrI 180069 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=3.014;HaplotypeScore=5.6964;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.232;QD=20.00;ReadPosRankSum=2.420;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3300,398,0 chrI 180231 . A G 2261 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=17.13;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2294,281,0 chrI 180277 . T G 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=111.8060;MLEAC=1;MLEAF=0.500;MQ=45.77;MQ0=0;MQRankSum=0.419;QD=0.22;ReadPosRankSum=6.498;SB=-1.027e+03 GT:AD:DP:GQ:PL 0/1:22,108:132:59:59,0,162 chrI 180286 . A G 137.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=103.1376;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=-1.010;QD=1.11;ReadPosRankSum=2.410;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:21:170,21,0 chrI 180327 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.87;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2354,282,0 chrI 180592 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.0279;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;MQRankSum=-0.403;QD=20.33;ReadPosRankSum=1.689;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3267,416,0 chrI 180644 . G A 3056 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=18.98;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3089,383,0 chrI 180646 . C T 3173 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=19.96;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3206,386,0 chrI 180652 . A C 2737 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.576;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;MQRankSum=-1.373;QD=17.89;ReadPosRankSum=2.337;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2770,347,0 chrI 180697 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.682;QD=19.01;ReadPosRankSum=1.627;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2561,317,0 chrI 180747 . A G 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.553;QD=19.78;ReadPosRankSum=1.708;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2882,356,0 chrI 180818 . C A 1149 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=9.27;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1182,147,0 chrI 180822 . T A 1078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=107.5825;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;MQRankSum=0.838;QD=8.69;ReadPosRankSum=1.704;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1111,138,0 chrI 180830 . A C 128.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.143;DP=120;Dels=0.00;FS=8.676;HaplotypeScore=109.9492;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;MQRankSum=-0.080;QD=1.07;ReadPosRankSum=-4.643;SB=-4.006e+01 GT:AD:DP:GQ:PL 1/1:112,8:120:21:161,21,0 chrI 180835 . T C 856 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=3.004;HaplotypeScore=99.6485;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;MQRankSum=-2.430;QD=7.02;ReadPosRankSum=2.409;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:889,114,0 chrI 180842 . A G 872 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=7.45;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:905,114,0 chrI 180844 . A T 824 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=6.87;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:857,105,0 chrI 180906 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=16.48;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1681,201,0 chrI 180908 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=16.71;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1721,207,0 chrI 180934 . T A 2086 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=17.68;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2119,257,0 chrI 180953 . A G 2079 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=16.37;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2112,263,0 chrI 180988 . A G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;MQRankSum=-0.757;QD=18.91;ReadPosRankSum=1.706;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2586,329,0 chrI 181013 . T C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=143;Dels=0.00;FS=9.312;HaplotypeScore=17.1076;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;MQRankSum=-1.433;QD=18.91;ReadPosRankSum=2.880;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:2737,341,0 chrI 181107 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=14.57;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1461,185,0 chrI 181117 . G A 1392 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;QD=14.50;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1425,179,0 chrI 181118 . T C 1397 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;QD=14.55;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1430,182,0 chrI 181119 . G A 1388 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=14.16;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1421,179,0 chrI 181197 . G T 1330 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1603;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=1;QD=17.97;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1363,168,0 chrI 181752 . G C 3484.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.24;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3484,425,0 chrI 181780 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.70;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3646,452,0 chrI 181806 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.88;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3061,363,0 chrI 181851 . T C 2423 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.86;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2456,297,0 chrI 182045 . A G 2437 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.83;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2470,314,0 chrI 182141 . G T 3118 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.65;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3151,378,0 chrI 182201 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.84;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3138,372,0 chrI 182210 . T A 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=2.912;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.121;QD=19.97;ReadPosRankSum=2.320;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3069,366,0 chrI 182240 . T C 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.969;QD=18.09;ReadPosRankSum=1.711;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3090,383,0 chrI 182308 . G T 2955 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.96;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:2988,354,0 chrI 182433 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=20.17;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2816,333,0 chrI 182605 . A T 955 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=18.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:988,123,0 chrI 182663 . C T 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DP=25;Dels=0.00;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.55;MQ0=16;MQRankSum=-0.729;QD=2.84;ReadPosRankSum=0.729;SB=-3.493e+01 GT:AD:DP:GQ:PL 0/1:19,6:25:26:101,0,26 chrI 183527 . G T 313 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=13.61;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:42:346,42,0 chrI 183544 . G A 369 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=12.72;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:48:402,48,0 chrI 183557 . T C 217 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=7.48;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:250,30,0 chrI 183573 . A T 162.03 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.79;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:195,24,0 chrI 183590 . A G 209 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.23;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:30:242,30,0 chrI 183591 . C G 212 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.30;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:30:245,30,0 chrI 183596 . C T 190.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.63;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:27:223,27,0 chrI 183607 . C A 170.03 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=4.25;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:24:203,24,0 chrI 183650 . G A 88.26 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=1;QD=1.77;SB=-2.627e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:15:121,15,0 chrI 183662 . T C 230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=2;MQRankSum=-1.988;QD=3.97;ReadPosRankSum=3.293;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:4,54:58:33:263,33,0 chrI 183675 . C T 358 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=3;QD=5.97;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:48:391,48,0 chrI 183689 . T A 547 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=4;QD=8.55;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:69:580,69,0 chrI 183774 . A G 1988 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=2;QD=19.68;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2021,257,0 chrI 183867 . C A 2218 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=18.80;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2251,267,0 chrI 184073 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=160;Dels=0.00;FS=7.469;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-1.175;QD=18.33;ReadPosRankSum=2.388;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2966,362,0 chrI 184083 . T C 2548 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=17.10;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2581,317,0 chrI 184235 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.322;QD=18.13;ReadPosRankSum=1.707;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2590,314,0 chrI 184256 . A G 2528 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=17.80;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2561,314,0 chrI 184331 . A G 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=104;Dels=0.00;FS=2.960;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.036;QD=19.62;ReadPosRankSum=2.378;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2073,249,0 chrI 184397 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.60;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2258,273,0 chrI 184418 . C G 2194 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.31;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2227,272,0 chrI 184481 . C A 1270 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=15.87;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1303,162,0 chrI 184488 . T C 1118 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=14.91;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1151,141,0 chrI 184492 . T C 1143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.126;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;MQRankSum=-1.322;QD=15.04;ReadPosRankSum=1.687;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1176,147,0 chrI 184510 . T C 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=2.966;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;MQRankSum=-1.721;QD=13.13;ReadPosRankSum=2.374;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1320,165,0 chrI 184520 . T C 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;MQRankSum=0.400;QD=13.46;ReadPosRankSum=1.694;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1258,159,0 chrI 184537 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=15.18;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1521,183,0 chrI 184648 . A T 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=3.513;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;MQRankSum=-1.557;QD=20.83;ReadPosRankSum=1.616;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2512,300,0 chrI 184669 . G T 2109 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;QD=21.74;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2142,261,0 chrI 184686 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=20.00;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2213,269,0 chrI 184723 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=20.04;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2518,305,0 chrI 184831 . T A 1889 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=13.03;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1922,234,0 chrI 184846 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;QD=11.86;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1682,201,0 chrI 184847 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=11.93;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1680,201,0 chrI 184857 . A G 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=2.999;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=0;MQRankSum=0.303;QD=9.50;ReadPosRankSum=2.398;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:1382,174,0 chrI 184865 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=9.83;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1272,156,0 chrI 184878 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=11.04;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1369,165,0 chrI 184906 . A T 1166 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=11.66;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1199,144,0 chrI 184909 . A G 1038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.40;MQ0=0;MQRankSum=-0.232;QD=10.70;ReadPosRankSum=1.696;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1071,132,0 chrI 184918 . C T 1213 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=12.51;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1246,153,0 chrI 184921 . A C 1210 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=11.63;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1243,153,0 chrI 185012 . G T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=18.22;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3517,417,0 chrI 185014 . A C 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=196;Dels=0.00;FS=3.825;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;MQRankSum=-1.373;QD=17.19;ReadPosRankSum=1.714;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:3369,407,0 chrI 185108 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.41;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2592,314,0 chrI 185109 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=18.49;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2529,303,0 chrI 185131 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=14.56;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2217,275,0 chrI 185138 . A T 1984 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=13.78;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2017,246,0 chrI 185159 . A C 1961 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=13.43;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1994,248,0 chrI 185179 . A G 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=167;Dels=0.00;FS=2.913;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;MQRankSum=2.228;QD=14.89;ReadPosRankSum=2.405;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:2520,317,0 chrI 185226 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=182;Dels=0.00;FS=9.400;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.871;QD=19.08;ReadPosRankSum=2.423;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3473,437,0 chrI 185379 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=7.302;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=1.040;QD=19.93;ReadPosRankSum=2.400;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3022,363,0 chrI 185431 . A C 2593 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.50;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2626,326,0 chrI 185469 . T C 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=148;Dels=0.00;FS=7.539;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.192;QD=17.68;ReadPosRankSum=2.383;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2649,329,0 chrI 185480 . T G 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=161;Dels=0.00;FS=7.287;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.672;QD=16.93;ReadPosRankSum=2.326;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:2759,333,0 chrI 185646 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=139;Dels=0.00;FS=9.620;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.331;QD=19.76;ReadPosRankSum=2.919;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,134:139:99:2779,333,0 chrI 185780 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.08;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2331,279,0 chrI 185827 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.26;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2441,297,0 chrI 185844 . T C 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=6.314;HaplotypeScore=105.9602;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=0.045;QD=16.52;ReadPosRankSum=2.413;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2280,279,0 chrI 185896 . A T 2128 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=17.59;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2161,258,0 chrI 186276 . C T 2873 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=19.54;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2906,348,0 chrI 186279 . C A 2657 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=17.95;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2690,326,0 chrI 186283 . G C 2618 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=18.31;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2651,329,0 chrI 186304 . A G 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;MQRankSum=0.913;QD=17.13;ReadPosRankSum=2.377;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2380,299,0 chrI 186330 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=5.295;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=-1.181;QD=18.00;ReadPosRankSum=1.706;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2409,296,0 chrI 186479 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.71;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2185,267,0 chrI 186499 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=16.06;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1800,216,0 chrI 186505 . A C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=4.810;HaplotypeScore=91.6404;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;MQRankSum=-0.619;QD=14.79;ReadPosRankSum=1.701;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1690,210,0 chrI 186554 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=12.71;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1507,183,0 chrI 186577 . T C 1907 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=14.02;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1940,242,0 chrI 186579 . G A 1949 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=14.65;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1982,237,0 chrI 186583 . A C 1885 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=13.56;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:1918,236,0 chrI 186648 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.11;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3224,386,0 chrI 186754 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6234;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.80;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2841,342,0 chrI 186788 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.912;QD=21.70;ReadPosRankSum=1.709;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3298,407,0 chrI 186857 . T C 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=148;Dels=0.01;FS=6.102;HaplotypeScore=12.5023;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.490;QD=17.00;ReadPosRankSum=2.560;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:3,141:147:99:2549,311,0 chrI 187062 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.20;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1689,207,0 chrI 187135 . A G 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;MQRankSum=-1.188;QD=15.67;ReadPosRankSum=1.683;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1130,138,0 chrI 187348 . T A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.41;MQ0=1;QD=4.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:46,6,0 chrI 187369 . T C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=1;QD=3.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:44,6,0 chrI 187498 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=3.66;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrI 187501 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=3.66;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:9:9:65,9,0 chrI 187532 . A G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=0;QD=3.41;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:87,12,0 chrI 187534 . G T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=0;QD=3.41;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:87,12,0 chrI 187535 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=0;QD=0.75;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrI 187537 . A G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=0;QD=3.41;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:87,12,0 chrI 187544 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=0;QD=3.21;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:87,12,0 chrI 187546 . C G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=0;QD=3.21;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:87,12,0 chrI 187555 . T G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=0.75;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrI 187557 . A T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=0.75;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrI 187558 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=0.75;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrI 187561 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=0.75;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrI 187563 . C G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=0.75;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrI 187568 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=0.75;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrI 187569 . C G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=0.75;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrI 187705 . G A 140.03 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;QD=3.18;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:24:173,24,0 chrI 187734 . C T 162.01 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=0;QD=3.77;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:27:195,27,0 chrI 187750 . C T 354 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=8.23;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:51:387,51,0 chrI 187768 . A G 514 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.01;MQ0=0;QD=10.49;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:72:547,72,0 chrI 187797 . C A 580 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=11.15;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:613,75,0 chrI 187801 . T C 664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=58;Dels=0.00;FS=9.266;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=0;MQRankSum=-2.703;QD=11.45;ReadPosRankSum=2.879;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:87:697,87,0 chrI 187869 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=21.61;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2237,267,0 chrI 187900 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=41.97;MQ0=2;QD=15.76;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1593,195,0 chrI 187914 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.31;MQ0=2;QD=13.53;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1264,150,0 chrI 187952 . G A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.17;MQ0=3;QD=0.30;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:6:46,6,0 chrI 187963 . G C 39.97 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.39;MQ0=3;QD=0.89;SB=-9.795e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:9:72,9,0 chrI 187969 . A G 85.26 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.85;MQ0=2;QD=1.85;SB=-1.433e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:15:118,15,0 chrI 187974 . G A 168.03 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=2;QD=3.91;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:24:201,24,0 chrI 187992 . G A 297 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=1;QD=8.25;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:42:330,42,0 chrI 188063 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.5443;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=22.00;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2761,330,0 chrI 188148 . A G 657 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=55;Dels=0.00;FS=9.305;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=4;MQRankSum=1.104;QD=11.95;ReadPosRankSum=3.206;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:4,51:55:87:690,87,0 chrI 188151 . T C 504 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=4;QD=10.29;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:66:537,66,0 chrI 188190 . T C 188.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.349;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=5;MQRankSum=0.771;QD=8.17;ReadPosRankSum=1.542;SB=-4.899e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:27:221,27,0 chrI 188209 . C T 437 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=4;QD=10.16;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:60:470,60,0 chrI 188210 . G A 484 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=4;QD=11.26;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:60:517,60,0 chrI 188219 . T G 574 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=3;MQRankSum=-1.732;QD=9.90;ReadPosRankSum=1.669;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:59:607,59,0 chrI 188276 . T C 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=5.828;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=1;MQRankSum=1.260;QD=12.44;ReadPosRankSum=1.693;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1140,141,0 chrI 188284 . G A 1053 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=1;QD=12.84;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1086,132,0 chrI 188323 . G C 436 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=1;QD=10.63;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,38:41:57:469,57,0 chrI 188349 . T G 252 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=10.50;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:36:285,36,0 chrI 188354 . T C 212 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=13.25;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:245,30,0 chrI 188356 . A C 214 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=13.38;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:247,30,0 chrI 188357 . C T 223 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=13.94;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:256,30,0 chrI 188369 . G T 94.26 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=0;QD=10.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:15:127,15,0 chrI 188386 . A G 38.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.57;MQ0=7;QD=3.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:9:71,9,0 chrI 188452 . A G 504 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=21.12;MQ0=8;QD=7.41;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:69:537,69,0 chrI 188658 . G A 628 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=4.4176;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=5;QD=7.85;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:78:661,78,0 chrI 188659 . C A 623 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.8402;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=5;QD=7.79;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:78:656,78,0 chrI 188708 . A G 809 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=90;Dels=0.00;FS=6.403;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=7;MQRankSum=-1.732;QD=8.99;ReadPosRankSum=1.690;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:842,108,0 chrI 188715 . T C 734 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=10;MQRankSum=-0.750;QD=8.74;ReadPosRankSum=2.350;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:93:767,93,0 chrI 188716 . T C 759 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=11;MQRankSum=-1.732;QD=9.04;ReadPosRankSum=1.637;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:792,99,0 chrI 188824 . A G 1158 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=69;Dels=0.00;FS=9.014;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=5;MQRankSum=2.064;QD=16.78;ReadPosRankSum=2.373;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1191,147,0 chrI 188881 . G C 2497 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=5;QD=18.23;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2530,320,0 chrI 188939 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=3.720;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=2;MQRankSum=1.400;QD=19.54;ReadPosRankSum=1.661;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2925,368,0 chrI 189049 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=2;QD=0.51;SB=-7.677e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:6:53,6,0 chrI 189052 . G A 131.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DP=52;Dels=0.00;FS=10.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=2;MQRankSum=-1.386;QD=2.52;ReadPosRankSum=1.663;SB=-4.207e+01 GT:AD:DP:GQ:PL 1/1:1,51:52:21:164,21,0 chrI 189066 . T C 718 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=2;QD=12.60;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:90:751,90,0 chrI 189131 . C T 1121 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=2;QD=13.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1154,135,0 chrI 189213 . A G 368 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=3;MQRankSum=1.040;QD=9.68;ReadPosRankSum=1.634;SB=-6.586e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:51:401,51,0 chrI 189284 . T A 140.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.783;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;MQRankSum=1.444;QD=9.34;ReadPosRankSum=2.123;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:2,13:15:21:173,21,0 chrI 189287 . A G 139.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;MQRankSum=0.992;QD=9.93;ReadPosRankSum=1.240;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:21:172,21,0 chrI 189414 . G A 559 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=11.41;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:72:592,72,0 chrI 189418 . T C 585 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;QD=11.47;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:618,75,0 chrI 189549 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=19.90;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1744,207,0 chrI 189587 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=20.05;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1176,144,0 chrI 189609 . A T 899 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=0;QD=15.77;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:932,114,0 chrI 189633 . T C 684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=0;MQRankSum=0.433;QD=10.52;ReadPosRankSum=1.678;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:90:717,90,0 chrI 189669 . A G 831 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.87;MQ0=0;QD=9.44;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:864,105,0 chrI 189715 . A T 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=5.504;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;MQRankSum=0.959;QD=9.37;ReadPosRankSum=1.698;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:998,123,0 chrI 189717 . A T 1004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=11.344;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;MQRankSum=2.160;QD=9.84;ReadPosRankSum=2.401;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1037,126,0 chrI 189735 . T A 779 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=8.75;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:812,99,0 chrI 189736 . C A 759 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=8.53;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:96:792,96,0 chrI 189740 . A G 707 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=10.154;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;MQRankSum=1.093;QD=7.94;ReadPosRankSum=2.394;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:90:740,90,0 chrI 189757 . A T 794 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=76.0657;MLEAC=2;MLEAF=1.00;MQ=33.58;MQ0=0;QD=8.27;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:827,102,0 chrI 189851 . G T 3070 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=22.25;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3103,369,0 chrI 189877 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.452;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=0.413;QD=21.51;ReadPosRankSum=1.710;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3334,413,0 chrI 189909 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;QD=19.13;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3265,392,0 chrI 189934 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8789;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=19.66;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2923,353,0 chrI 189997 . G A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=125;Dels=0.00;FS=10.924;HaplotypeScore=274.3113;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=0;MQRankSum=0.284;QD=0.18;ReadPosRankSum=-4.407;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:113,9:125:53:53,0,200 chrI 190081 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.8425;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=18.19;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3016,363,0 chrI 190109 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=187;Dels=0.00;FS=10.710;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.071;QD=16.37;ReadPosRankSum=2.885;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:3,180:187:99:3095,386,0 chrI 190148 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=15.95;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3175,389,0 chrI 190169 . G C 3138 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=22.6088;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=16.26;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,188:193:99:3171,395,0 chrI 190402 . A C 6832.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.93;SB=-3.924e+03 GT:AD:DP:GQ:PL 1/1:0,360:361:99:6832,856,0 chrI 190429 . G A 8502.01 filter AC=2;AF=1.00;AN=2;DP=437;Dels=0.00;FS=0.000;HaplotypeScore=23.5447;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.46;SB=-5.164e+03 GT:AD:DP:GQ:PL 1/1:0,436:437:99:8502,1027,0 chrI 190558 . T A 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=291;Dels=0.00;FS=2.998;HaplotypeScore=19.3897;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.505;QD=16.12;ReadPosRankSum=2.416;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:2,289:291:99:4691,592,0 chrI 190588 . T C 5811.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=361;Dels=0.00;FS=6.634;HaplotypeScore=20.6015;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.037;QD=16.10;ReadPosRankSum=2.354;SB=-3.721e+03 GT:AD:DP:GQ:PL 1/1:2,358:361:99:5811,704,0 chrI 190621 . A G 5627.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=405;Dels=0.00;FS=5.824;HaplotypeScore=14.3908;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.918;QD=13.89;ReadPosRankSum=2.963;SB=-4.060e+03 GT:AD:DP:GQ:PL 1/1:3,401:405:99:5627,709,0 chrI 190636 . T C 5477.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=392;Dels=0.00;FS=3.617;HaplotypeScore=12.6031;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.068;QD=13.97;ReadPosRankSum=1.697;SB=-3.883e+03 GT:AD:DP:GQ:PL 1/1:1,390:392:99:5477,679,0 chrI 190880 . T A 5738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=21.5823;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.982;QD=18.81;ReadPosRankSum=1.292;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:2,303:305:99:5738,689,0 chrI 191026 . C T 9440.01 filter AC=2;AF=1.00;AN=2;DP=489;Dels=0.00;FS=0.000;HaplotypeScore=20.1578;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.30;SB=-4.387e+03 GT:AD:DP:GQ:PL 1/1:0,487:489:99:9440,1161,0 chrI 191472 . G A 4697.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.35;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4697,566,0 chrI 191617 . T C 4968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=15.1064;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.612;QD=17.25;ReadPosRankSum=1.720;SB=-3.331e+03 GT:AD:DP:GQ:PL 1/1:1,287:288:99:4968,611,0 chrI 191704 . G C 5030.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=27.4246;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=15.24;SB=-3.520e+03 GT:AD:DP:GQ:PL 1/1:0,322:330:99:5030,625,0 chrI 191755 . A G 6589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=26.5567;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.712;QD=18.51;ReadPosRankSum=1.703;SB=-3.896e+03 GT:AD:DP:GQ:PL 1/1:1,351:356:99:6589,806,0 chrI 191818 . G T 6261.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=32.9088;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.57;SB=-3.632e+03 GT:AD:DP:GQ:PL 1/1:1,318:320:99:6261,752,0 chrI 192170 . A G 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.400;QD=15.19;ReadPosRankSum=1.661;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2251,281,0 chrI 192196 . A G 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.387;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.515;QD=13.73;ReadPosRankSum=4.445;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:7,132:139:99:1942,242,0 chrI 192306 . C T 143.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.614;DP=46;Dels=0.00;FS=5.595;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;MQRankSum=0.713;QD=3.11;ReadPosRankSum=5.091;SB=-3.406e+01 GT:AD:DP:GQ:PL 1/1:34,12:46:21:176,21,0 chrI 192309 . C T 125.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=43;Dels=0.00;FS=5.115;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;MQRankSum=0.257;QD=2.91;ReadPosRankSum=5.023;SB=-3.406e+01 GT:AD:DP:GQ:PL 1/1:31,12:43:21:158,21,0 chrI 192429 . G C 402 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.27;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:54:435,54,0 chrI 192469 . G A 446 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.93;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:57:479,57,0 chrI 192531 . C T 644 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=15.71;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:81:677,81,0 chrI 192723 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.09;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2266,273,0 chrI 193131 . C T 5766.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.2966;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.82;SB=-3.151e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5766,692,0 chrI 193191 . T C 5346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=18.7281;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.411;QD=19.58;ReadPosRankSum=1.719;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:1,269:273:99:5346,664,0 chrI 193260 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=234;Dels=0.00;FS=6.700;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.238;QD=19.35;ReadPosRankSum=2.334;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:4527,560,0 chrI 193737 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.68;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3371,410,0 chrI 193807 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.7186;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.76;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2097,246,0 chrI 194101 . A G 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=5.346;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.628;QD=15.38;ReadPosRankSum=1.671;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:1786,227,0 chrI 194104 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=15.73;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1763,210,0 chrI 194166 . T C 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-1.391;QD=11.20;ReadPosRankSum=1.704;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:1411,177,0 chrI 194169 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-1.141;QD=11.02;ReadPosRankSum=1.678;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1454,182,0 chrI 194241 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.2904;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.40;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2977,357,0 chrI 194406 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.46;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2857,350,0 chrI 194436 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.40;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2609,326,0 chrI 194475 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.52;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2863,347,0 chrI 194499 . T A 2955 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.52;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2988,362,0 chrI 194619 . A G 2154 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=17.95;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2187,269,0 chrI 194625 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=17.37;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2187,267,0 chrI 194803 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.5158;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=16.15;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1923,234,0 chrI 194818 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=15.00;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1938,237,0 chrI 194831 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=3.144;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;MQRankSum=0.026;QD=14.08;ReadPosRankSum=1.680;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:1892,236,0 chrI 194853 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=14.65;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2230,272,0 chrI 194952 . C G 2631 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.05;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2664,332,0 chrI 195144 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.54;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2984,359,0 chrI 195324 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5551;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.67;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2885,347,0 chrI 195456 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.73;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3710,438,0 chrI 195459 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=3.704;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.070;QD=18.89;ReadPosRankSum=1.713;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3475,437,0 chrI 195522 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.96;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2573,311,0 chrI 195609 . T C 2980 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.1429;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.99;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3013,371,0 chrI 195672 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.9437;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.98;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2572,309,0 chrI 195750 . A G 3348.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0172;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.60;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3348,413,0 chrI 195910 . A G 2656 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.0284;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.84;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2689,329,0 chrI 196198 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.39;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1616,201,0 chrI 196240 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.93;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1109,135,0 chrI 196248 . G C 762 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=16.21;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:795,102,0 chrI 196331 . C G 945 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.69;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:978,120,0 chrI 196423 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.05;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1296,156,0 chrI 196452 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=29.9618;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=19.31;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1153,138,0 chrI 196477 . C T 718 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=14.36;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:751,90,0 chrI 196500 . C T 741 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=16.11;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:774,93,0 chrI 196523 . T A 834 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=16.68;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:867,108,0 chrI 196558 . A G 1058 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.89;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1091,135,0 chrI 196623 . C T 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=78;Dels=0.00;FS=3.188;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=-0.947;QD=15.56;ReadPosRankSum=1.316;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1247,153,0 chrI 196738 . C T 496 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=12.40;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:66:529,66,0 chrI 196756 . A T 574 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=11.04;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:72:607,72,0 chrI 196773 . G T 705 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=10.85;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:90:738,90,0 chrI 196779 . G A 787 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;QD=11.24;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:820,99,0 chrI 196801 . A G 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.004;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;MQRankSum=0.630;QD=11.73;ReadPosRankSum=1.693;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1065,135,0 chrI 196817 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=12.49;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1207,150,0 chrI 196836 . G A 935 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;QD=11.40;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:968,120,0 chrI 196855 . T C 729 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=10.27;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:96:762,96,0 chrI 196861 . C T 657 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=9.52;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:84:690,84,0 chrI 196884 . C T 335 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=5.58;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:45:368,45,0 chrI 196891 . G T 210 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=3.89;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:30:243,30,0 chrI 196896 . C T 212 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=4.24;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:30:245,30,0 chrI 196929 . A G 316 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=4.51;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:42:349,42,0 chrI 196932 . C T 456 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=0;QD=6.33;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:60:489,60,0 chrI 196953 . A G 802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;MQRankSum=-0.019;QD=9.01;ReadPosRankSum=-0.292;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:835,102,0 chrI 197024 . A G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;MQRankSum=0.122;QD=19.47;ReadPosRankSum=1.662;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1961,242,0 chrI 197042 . A T 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=3.032;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;MQRankSum=0.275;QD=19.89;ReadPosRankSum=2.392;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1724,207,0 chrI 197120 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=17.37;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1475,177,0 chrI 197123 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=18.40;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1560,183,0 chrI 197153 . A C 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;MQRankSum=1.457;QD=15.49;ReadPosRankSum=1.653;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1396,171,0 chrI 197236 . G T 1708 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=21.35;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1741,213,0 chrI 197266 . G T 1533 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=20.44;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1566,189,0 chrI 197344 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=20.96;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1479,174,0 chrI 197587 . G A 375 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=7.81;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:48:408,48,0 chrI 197621 . G A 865 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=56.0575;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=11.53;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:898,108,0 chrI 197623 . T C 850 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=168.1724;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=11.33;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:883,108,0 chrI 197641 . A G 854 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=56.0575;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=10.67;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:887,111,0 chrI 197646 . T G 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=0;MQRankSum=-1.732;QD=10.05;ReadPosRankSum=1.651;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:887,108,0 chrI 197670 . G T 1032 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=12.14;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1065,129,0 chrI 197694 . G T 847 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=10.33;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:880,105,0 chrI 197695 . A G 833 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=10.16;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:866,108,0 chrI 197772 . A G 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;MQRankSum=-0.262;QD=19.35;ReadPosRankSum=1.627;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1310,162,0 chrI 197811 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=56.1877;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=13.79;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:957,117,0 chrI 197867 . C A 1560 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=14.72;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1593,189,0 chrI 197873 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=14.50;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1671,198,0 chrI 197983 . T A 1815 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=21.35;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1848,219,0 chrI 198013 . T A 1552 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=20.42;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1585,189,0 chrI 198091 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=22.00;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2431,291,0 chrI 198113 . T C 2429 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=19.91;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2462,299,0 chrI 198157 . C G 2043 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=20.43;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2076,263,0 chrI 198168 . G T 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.054;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;MQRankSum=-0.189;QD=20.10;ReadPosRankSum=1.629;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2103,257,0 chrI 198190 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=18.80;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1631,203,0 chrI 198215 . C A 1234 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=17.88;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1267,153,0 chrI 198232 . C G 855 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=14.74;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:888,108,0 chrI 198244 . G T 870 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=16.11;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:903,108,0 chrI 198252 . C G 814 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=16.28;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:847,105,0 chrI 198253 . T C 814 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=16.28;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:847,105,0 chrI 198259 . T C 812 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=15.92;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:845,105,0 chrI 198267 . A G 872 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=15.85;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:905,114,0 chrI 198279 . A G 964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;MQRankSum=-1.278;QD=15.80;ReadPosRankSum=1.619;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:1,60:61:99:997,126,0 chrI 198287 . A G 962 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=15.77;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:995,120,0 chrI 198299 . A C 1023 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=16.50;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1056,132,0 chrI 198331 . G T 1535 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=18.95;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1568,194,0 chrI 198351 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=19.82;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1559,194,0 chrI 198384 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=19.98;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1292,167,0 chrI 198398 . C T 919 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=18.76;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:952,122,0 chrI 198418 . A C 431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;MQRankSum=-1.398;QD=13.47;ReadPosRankSum=1.621;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:63:464,63,0 chrI 198422 . T A 369 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=17.57;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:402,54,0 chrI 198456 . T A 101.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=14.45;SB=-6.863e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:134,18,0 chrI 198467 . G T 35.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=8.99;SB=-4.221e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:68,9,0 chrI 198468 . C G 35.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=8.99;SB=-4.221e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:68,9,0 chrI 198482 . G A 86.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=10.78;SB=-6.876e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:119,15,0 chrI 198514 . C A 345 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=9.86;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:48:378,48,0 chrI 198536 . C T 376 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=8.17;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:51:409,51,0 chrI 198557 . C T 296 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=6.17;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:42:329,42,0 chrI 198560 . T C 369 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=7.69;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:51:402,51,0 chrI 198562 . G A 370 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=7.71;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:51:403,51,0 chrI 198582 . G A 167.01 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=0;QD=3.98;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:27:200,27,0 chrI 198586 . A G 169.01 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.63;MQ0=0;QD=4.23;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:27:202,27,0 chrI 198589 . A G 104.13 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=0;QD=2.67;SB=-3.791e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:18:137,18,0 chrI 198601 . T A 57.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=2.88;SB=-1.675e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:12:90,12,0 chrI 198603 . T G 56.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=2.83;SB=-1.705e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:12:89,12,0 chrI 198604 . C T 58.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=2.93;SB=-1.715e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:12:91,12,0 chrI 198648 . C T 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=4.00;SB=-7.272e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:68,9,0 chrI 198652 . A G 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=5.28;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:69,9,0 chrI 198657 . C T 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=2.13;SB=-6.880e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:46,6,0 chrI 198707 . C T 331 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=22.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:42:364,42,0 chrI 198713 . C T 434 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=21.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:54:467,54,0 chrI 198815 . G A 559 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=21.50;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:75:592,75,0 chrI 198816 . G A 556 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=22.24;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:72:589,72,0 chrI 198851 . G C 55.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=6.17;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:88,12,0 chrI 198856 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=8.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:4:9:65,9,0 chrI 198932 . A C 66.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.54;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:99,12,0 chrI 198938 . G A 69.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.63;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:102,12,0 chrI 198946 . G A 92.26 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.43;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:125,15,0 chrI 198961 . G A 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=7.32;SB=-7.495e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:172,21,0 chrI 198964 . C T 137.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=7.21;SB=-7.495e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:170,21,0 chrI 198966 . C T 142.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=7.48;SB=-7.495e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:175,21,0 chrI 198971 . C T 117.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.71;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:150,18,0 chrI 198972 . C T 86.26 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=8.63;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:119,15,0 chrI 198973 . G A 116.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.61;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:149,18,0 chrI 198976 . T C 111.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.11;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:144,18,0 chrI 198980 . G A 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.51;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:148,18,0 chrI 198981 . G A 111.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.11;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:144,18,0 chrI 198983 . G A 117.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.71;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:150,18,0 chrI 198986 . C G 117.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.71;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:150,18,0 chrI 198988 . G A 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.51;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:148,18,0 chrI 198989 . G C 112.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.21;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:145,18,0 chrI 198990 . C T 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=11.81;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:151,18,0 chrI 198994 . G A 112.13 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=6.23;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:145,18,0 chrI 199012 . C G 107.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=5.95;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:140,18,0 chrI 202663 . C T 45.97 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=19.7081;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=1.92;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:9:78,9,0 chrI 202664 . T C 43.97 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=19.7081;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=1.83;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:9:76,9,0 chrI 202692 . G T 133.06 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=4.44;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:21:166,21,0 chrI 202710 . T C 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.200;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.8966;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;MQRankSum=-2.288;QD=1.47;ReadPosRankSum=2.599;SB=0.936 GT:AD:DP:GQ:PL 1/1:5,32:37:12:87,12,0 chrI 202712 . C G 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.311;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.8966;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;MQRankSum=-2.288;QD=1.47;ReadPosRankSum=2.732;SB=0.936 GT:AD:DP:GQ:PL 1/1:5,32:37:12:87,12,0 chrI 202713 . T C 54.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;MQRankSum=1.631;QD=1.56;ReadPosRankSum=1.631;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,33:34:12:87,12,0 chrI 202718 . A T 268 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.6853;MLEAC=2;MLEAF=1.00;MQ=21.83;MQ0=0;QD=6.23;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:39:301,39,0 chrI 202724 . A G 290 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.63;MQ0=0;QD=6.44;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:42:323,42,0 chrI 202727 . T C 304 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.82;MQ0=0;MQRankSum=-0.753;QD=6.61;ReadPosRankSum=1.657;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:45:337,45,0 chrI 202731 . G A 288 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=0;QD=6.55;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:42:321,42,0 chrI 202732 . G A 316 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=0;QD=7.18;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:45:349,45,0 chrI 202740 . T A 316 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.87;MQ0=0;MQRankSum=-0.094;QD=5.75;ReadPosRankSum=1.669;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:45:349,45,0 chrI 202761 . C T 406 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=0;QD=6.88;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:57:439,57,0 chrI 202762 . T A 375 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=0;QD=6.36;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:54:408,54,0 chrI 202763 . C G 399 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=6.23;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:64:57:432,57,0 chrI 202776 . C T 589 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=6.77;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:81:622,81,0 chrI 202801 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=34.22;MQ0=0;QD=11.28;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1240,150,0 chrI 202840 . T A 1490 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=15.68;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1523,183,0 chrI 202856 . T G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-0.521;QD=17.65;ReadPosRankSum=1.631;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1869,236,0 chrI 202897 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=16.62;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1213,147,0 chrI 202906 . A T 1070 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;QD=14.08;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1103,138,0 chrI 202939 . A T 1698 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=16.02;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1731,227,0 chrI 202953 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;QD=16.39;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1852,245,0 chrI 202957 . T C 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=11.338;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=-1.187;QD=16.04;ReadPosRankSum=2.363;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1846,245,0 chrI 202977 . A T 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;MQRankSum=0.658;QD=18.04;ReadPosRankSum=2.412;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2360,299,0 chrI 203031 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=82.3327;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=17.66;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:1958,242,0 chrI 203105 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.02;FS=7.549;HaplotypeScore=20.3364;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;MQRankSum=-1.840;QD=11.61;ReadPosRankSum=2.405;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1322,165,0 chrI 203111 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=12.13;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1343,165,0 chrI 203117 . T C 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.692;DP=112;Dels=0.00;FS=125.538;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;MQRankSum=5.173;QD=10.29;ReadPosRankSum=3.502;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:49,63:112:99:1186,108,0 chrI 203167 . A G 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;DP=76;Dels=0.00;FS=83.810;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=30.89;MQ0=0;MQRankSum=0.603;QD=0.70;ReadPosRankSum=0.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,37:76:83:83,0,585 chrI 203180 . T C,G 707.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.08;MQ0=0;QD=10.10;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/2:0,35,34:70:99:767,223,142,545,0,512 chrI 203182 . G A 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.231;DP=71;Dels=0.00;FS=58.414;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=30.42;MQ0=0;MQRankSum=0.167;QD=2.16;ReadPosRankSum=0.328;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,34:71:99:183,0,542 chrI 203198 . C A 517.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.956;DP=111;Dels=0.00;FS=75.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.99;MQ0=0;MQRankSum=-0.109;QD=4.66;ReadPosRankSum=4.813;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:73,38:111:99:547,0,208 chrI 203208 . C A 511.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DP=124;Dels=0.00;FS=69.887;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=29.94;MQ0=0;MQRankSum=1.211;QD=4.12;ReadPosRankSum=3.012;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:83,41:124:99:541,0,291 chrI 203214 . G C 998 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=8.46;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1031,129,0 chrI 203215 . C T 908 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=0;QD=7.57;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:941,117,0 chrI 203220 . T C 464.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DP=134;Dels=0.00;FS=69.487;HaplotypeScore=6.5509;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=0;MQRankSum=1.125;QD=3.46;ReadPosRankSum=2.631;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:92,42:134:99:494,0,399 chrI 203238 . T A 790.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280;DP=152;Dels=0.00;FS=61.984;HaplotypeScore=14.9849;MLEAC=1;MLEAF=0.500;MQ=33.95;MQ0=0;MQRankSum=-2.238;QD=5.20;ReadPosRankSum=0.165;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:60,92:152:99:820,0,653 chrI 203252 . C T 612.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.179;DP=182;Dels=0.00;FS=45.738;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=35.25;MQ0=0;MQRankSum=3.509;QD=3.36;ReadPosRankSum=1.357;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:115,67:182:99:642,0,1397 chrI 203283 . A T 2389.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DP=211;Dels=0.00;FS=13.846;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=0;MQRankSum=-3.510;QD=11.32;ReadPosRankSum=0.111;SB=-6.860e+02 GT:AD:DP:GQ:PL 0/1:70,141:211:99:2419,0,610 chrI 203301 . G A 2376.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DP=220;Dels=0.00;FS=4.791;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=32.86;MQ0=0;MQRankSum=-3.377;QD=10.80;ReadPosRankSum=0.289;SB=-9.410e+02 GT:AD:DP:GQ:PL 0/1:58,156:220:99:2406,0,499 chrI 203313 . G A 4668.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=20.21;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,227:231:99:4668,575,0 chrI 203349 . C T 5948.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=23.1054;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=21.40;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5948,716,0 chrI 203386 . A T 4110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.636;DP=386;Dels=0.00;FS=8.542;HaplotypeScore=52.0899;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=0;MQRankSum=1.013;QD=10.65;ReadPosRankSum=-0.780;SB=-8.400e+02 GT:AD:DP:GQ:PL 0/1:153,233:386:99:4110,0,2203 chrI 203458 . C T 7456.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=0;QD=21.93;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,338:340:99:7456,898,0 chrI 203461 . G A 7097.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=21.97;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:7097,865,0 chrI 203499 . G A 992.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.621;DP=217;Dels=0.00;FS=25.161;HaplotypeScore=54.0926;MLEAC=1;MLEAF=0.500;MQ=30.13;MQ0=7;MQRankSum=-2.943;QD=4.57;ReadPosRankSum=1.626;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:137,80:217:99:1022,0,1747 chrI 203500 . G A 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DP=213;Dels=0.00;FS=26.575;HaplotypeScore=101.8195;MLEAC=1;MLEAF=0.500;MQ=30.13;MQ0=8;MQRankSum=-0.806;QD=0.50;ReadPosRankSum=1.649;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,30:213:99:136,0,2592 chrI 203503 . A C 768.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.849;DP=202;Dels=0.00;FS=58.241;HaplotypeScore=122.2465;MLEAC=1;MLEAF=0.500;MQ=29.76;MQ0=9;MQRankSum=-2.644;QD=3.80;ReadPosRankSum=3.725;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,69:202:99:798,0,1632 chrI 203504 . G A 841.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;DP=200;Dels=0.04;FS=59.991;HaplotypeScore=119.2934;MLEAC=1;MLEAF=0.500;MQ=29.76;MQ0=9;MQRankSum=-1.755;QD=4.21;ReadPosRankSum=3.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,69:193:99:871,0,1578 chrI 203510 . A G 1793.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;DP=180;Dels=0.00;FS=14.165;HaplotypeScore=147.2520;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=9;MQRankSum=-1.843;QD=9.96;ReadPosRankSum=0.679;SB=-2.120e+02 GT:AD:DP:GQ:PL 0/1:54,126:180:99:1823,0,288 chrI 203512 . G A 1764.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.572;DP=170;Dels=0.00;FS=28.838;HaplotypeScore=113.5921;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=9;MQRankSum=-0.696;QD=10.38;ReadPosRankSum=0.282;SB=-1.098e+02 GT:AD:DP:GQ:PL 0/1:48,122:170:99:1794,0,232 chrI 203516 . G T 1520.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.589;DP=173;Dels=0.00;FS=42.026;HaplotypeScore=8.2567;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=9;MQRankSum=-0.097;QD=8.79;ReadPosRankSum=0.077;SB=-1.560e+01 GT:AD:DP:GQ:PL 0/1:43,127:173:99:1550,0,231 chrI 203523 . A G 1628.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;DP=168;Dels=0.00;FS=29.710;HaplotypeScore=8.1310;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=9;MQRankSum=1.068;QD=9.69;ReadPosRankSum=1.437;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:39,129:168:84:1658,0,84 chrI 203528 . T C 1656.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840;DP=169;Dels=0.00;FS=25.362;HaplotypeScore=7.3318;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=9;MQRankSum=3.410;QD=9.80;ReadPosRankSum=1.407;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:33,132:169:48:1686,0,48 chrI 203546 . G A 345.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.397;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=24.2102;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=9;MQRankSum=0.186;QD=1.99;ReadPosRankSum=2.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,53:173:99:375,0,1528 chrI 203547 . A G 1213.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.413;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=26.9610;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=9;MQRankSum=1.482;QD=7.05;ReadPosRankSum=-0.848;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,96:172:99:1243,0,745 chrI 203548 . A G,T 1601.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.845;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.74;MQ0=9;MQRankSum=1.005;QD=9.36;ReadPosRankSum=2.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:22,96,53:171:99:1661,409,495,1023,0,1195 chrI 203549 . A G 387.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.352;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=26.9610;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=9;MQRankSum=1.493;QD=2.03;ReadPosRankSum=3.781;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,53:191:99:417,0,1575 chrI 203553 . T C 391.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.072;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=26.0669;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=9;MQRankSum=-0.112;QD=1.77;ReadPosRankSum=1.449;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,68:221:99:421,0,1876 chrI 203555 . C T 410.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.509;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=23.3181;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=9;MQRankSum=2.041;QD=1.81;ReadPosRankSum=1.658;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,68:226:99:440,0,1905 chrI 203561 . A G 418.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.783;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=9;MQRankSum=-0.223;QD=1.70;ReadPosRankSum=0.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,75:246:99:448,0,2151 chrI 203588 . T C 3874.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=39.4291;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=3;QD=15.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:3874,473,0 chrI 203589 . G C 3813.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=3;QD=14.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:3813,470,0 chrI 203590 . G A 3959.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=2;QD=15.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:3959,470,0 chrI 203599 . C A 1771 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.875;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=-0.054;QD=11.14;ReadPosRankSum=0.804;SB=3.00 GT:AD:DP:GQ:PL 1/1:40,119:159:99:1804,219,0 chrI 203600 . A C 1748 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=0.411;QD=10.99;ReadPosRankSum=1.189;SB=3.00 GT:AD:DP:GQ:PL 1/1:40,119:159:99:1781,219,0 chrI 203604 . A G 1700 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.492;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=-1.034;QD=10.69;ReadPosRankSum=1.260;SB=3.00 GT:AD:DP:GQ:PL 1/1:40,119:159:99:1733,218,0 chrI 203605 . C T 1827 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.036;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=-0.447;QD=11.49;ReadPosRankSum=0.756;SB=3.00 GT:AD:DP:GQ:PL 1/1:40,119:159:99:1860,219,0 chrI 203610 . C T 2579 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=11.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:2612,309,0 chrI 203612 . A G 2398 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=10.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:2431,308,0 chrI 203615 . T C 2566 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=39.2872;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=10.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:2599,317,0 chrI 203621 . C T 2654 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=10.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:2687,329,0 chrI 203622 . G A 2672 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=10.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:2705,329,0 chrI 203624 . A T 2682 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=10.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:2715,329,0 chrI 203627 . A G 2546 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=9.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:2579,326,0 chrI 203633 . T G 2488 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;MQRankSum=0.905;QD=9.28;ReadPosRankSum=1.435;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:2521,320,0 chrI 203639 . C A 2691 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=11.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:2724,332,0 chrI 203642 . G T 2392 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=10.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:2425,299,0 chrI 203645 . T C 1772 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=9.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:1805,222,0 chrI 203646 . G A 1815 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=9.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:1848,219,0 chrI 203648 . T A,C 1537.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.20;MQ0=1;QD=8.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,146,42:188:99:1597,372,201,1225,0,1174 chrI 203655 . A G 1151 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=3;MQRankSum=-0.685;QD=6.22;ReadPosRankSum=2.796;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:3,181:185:99:1184,150,0 chrI 203660 . C T 858 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=4;QD=5.68;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,151:151:99:891,108,0 chrI 203668 . G C 166.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.580;DP=134;Dels=0.00;FS=8.002;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=4;MQRankSum=1.557;QD=1.24;ReadPosRankSum=3.252;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:101,33:134:99:196,0,230 chrI 203669 . T A 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;DP=132;Dels=0.00;FS=7.819;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=27.51;MQ0=4;MQRankSum=1.344;QD=1.27;ReadPosRankSum=3.499;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:99,33:132:99:198,0,248 chrI 203670 . T A 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451;DP=131;Dels=0.00;FS=7.757;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=4;MQRankSum=-0.361;QD=1.36;ReadPosRankSum=3.712;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:98,33:131:99:208,0,230 chrI 203672 . A C 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.758;DP=129;Dels=0.00;FS=7.694;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=27.48;MQ0=4;MQRankSum=2.501;QD=1.32;ReadPosRankSum=4.097;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:96,33:129:99:200,0,221 chrI 203678 . C G 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.906;DP=110;Dels=0.00;FS=6.191;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=4;MQRankSum=0.592;QD=1.83;ReadPosRankSum=3.306;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:76,34:110:99:231,0,214 chrI 203683 . T A 193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.013;DP=102;Dels=0.00;FS=5.592;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.06;MQ0=4;MQRankSum=1.317;QD=1.89;ReadPosRankSum=3.068;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:69,33:102:99:223,0,222 chrI 203686 . C A 196.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;DP=92;Dels=0.00;FS=5.736;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=4;MQRankSum=2.425;QD=2.13;ReadPosRankSum=3.834;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:62,30:92:99:226,0,216 chrI 203687 . T G 185.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.904;DP=89;Dels=0.00;FS=2.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=4;MQRankSum=1.699;QD=2.08;ReadPosRankSum=3.201;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:59,30:89:99:215,0,226 chrI 203690 . T C 189.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.519;DP=83;Dels=0.00;FS=2.501;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.72;MQ0=4;MQRankSum=2.549;QD=2.28;ReadPosRankSum=2.527;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:53,30:83:99:219,0,227 chrI 203704 . C T 237.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;DP=47;Dels=0.00;FS=2.672;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=4;MQRankSum=2.306;QD=5.04;ReadPosRankSum=3.402;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:19,28:47:46:267,0,46 chrI 203705 . C A 234.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.708;DP=47;Dels=0.00;FS=2.672;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=4;MQRankSum=2.102;QD=4.98;ReadPosRankSum=3.402;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:19,28:47:42:264,0,42 chrI 203711 . A T 221.27 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=37;Dels=0.00;FS=2.638;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=4;MQRankSum=0.990;QD=5.98;ReadPosRankSum=2.365;SB=-7.827e+01 GT:AD:DP:GQ:PL 0/1:13,24:37:9:251,0,9 chrI 203714 . C T 223.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=4;MQRankSum=-1.194;QD=7.21;ReadPosRankSum=0.102;SB=-7.442e+01 GT:AD:DP:GQ:PL 0/1:8,23:31:7:253,0,7 chrI 203732 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=10;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.11;MQ0=5;MQRankSum=0.731;QD=1.69;ReadPosRankSum=0.731;SB=-1.980e+01 GT:AD:DP:GQ:PL 1/1:5,5:10:6:48,6,0 chrI 203903 . A C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.65;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:45,6,0 chrI 205655 . C T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=2;QD=1.20;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:48,6,0 chrI 205659 . G T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=1;QD=1.49;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:49,6,0 chrI 205661 . T G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=1;QD=1.40;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:1,11:12:6:48,6,0 chrI 205670 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=1;QD=1.62;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,10:11:6:49,6,0 chrI 205677 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.18;MQ0=1;QD=1.69;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:48,6,0 chrI 205811 . C T 105.13 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.99;MQ0=19;QD=3.29;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:18:138,18,0 chrI 205829 . T C 179.01 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.84;MQ0=19;QD=5.11;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:27:212,27,0 chrI 205835 . C T 240 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.08;MQ0=19;QD=6.32;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:36:273,36,0 chrI 205886 . T C 248 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.57;MQ0=0;QD=13.78;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:36:281,36,0 chrI 205901 . A G 115.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;MQRankSum=-0.742;QD=16.45;ReadPosRankSum=0.742;SB=-2.288e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:18:148,18,0 chrI 205913 . T C 39.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=13.32;SB=-2.221e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:72,9,0 chrI 206351 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.29;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:47,6,0 chrI 206352 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrI 206354 . G C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrI 206361 . A G 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=2.60;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:71,9,0 chrI 206365 . G A 12.32 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.652;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=0;MQRankSum=-1.591;QD=0.82;ReadPosRankSum=-1.237;SB=-6.072e-02 GT:AD:DP:GQ:PL 0/1:9,6:15:16:42,0,16 chrI 206369 . T A 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=2.80;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:74,9,0 chrI 206375 . C A 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=2.80;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:74,9,0 chrI 206377 . G C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=5.8802;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=2.60;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:71,9,0 chrI 206392 . G T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=0.51;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,26:35:6:49,6,0 chrI 206393 . C A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.071;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;MQRankSum=0.091;QD=0.51;ReadPosRankSum=-3.305;SB=1.24 GT:AD:DP:GQ:PL 1/1:10,25:35:6:49,6,0 chrI 206396 . C T 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.8059;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=0;QD=0.23;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,185:185:9:74,9,0 chrI 206399 . C A 17.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7925;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=0;QD=0.09;SB=12.07 GT:AD:DP:GQ:PL 1/1:0,118:195:6:49,6,0 chrI 206402 . T C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.194;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.7393;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=0;MQRankSum=0.862;QD=0.18;ReadPosRankSum=-1.669;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,218:219:9:71,9,0 chrI 206414 . T C 26.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.661;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=57.6178;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=0;MQRankSum=2.635;QD=0.10;ReadPosRankSum=2.920;SB=-9.125e-02 GT:AD:DP:GQ:PL 0/1:42,209:251:14:56,0,14 chrI 206426 . T A 151.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.589;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=114.6227;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=0;MQRankSum=-2.129;QD=0.55;ReadPosRankSum=2.494;SB=-6.090e-03 GT:AD:DP:GQ:PL 0/1:29,208:274:57:181,0,57 chrI 206432 . A T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.365;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=213.6051;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=0;MQRankSum=3.032;QD=0.12;ReadPosRankSum=-0.154;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:241,32:273:63:63,0,265 chrI 206435 . T C 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.505;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=64.9013;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=0;MQRankSum=-0.440;QD=0.70;ReadPosRankSum=1.222;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,217:255:94:209,0,94 chrI 206438 . T A,C 302.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.141;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.65;MQ0=0;MQRankSum=3.950;QD=1.21;ReadPosRankSum=6.209;SB=-6.522e-03 GT:AD:DP:GQ:PL 1/2:36,177,37:250:89:362,122,89,240,0,222 chrI 206442 . A T 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.591;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=33.1552;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=1;MQRankSum=3.883;QD=0.41;ReadPosRankSum=0.267;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,43:239:99:129,0,247 chrI 206447 . C T 199.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.388;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=20.7174;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=6;MQRankSum=-0.377;QD=0.93;ReadPosRankSum=-1.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,164:215:99:229,0,165 chrI 206450 . C T 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.415;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.6067;MLEAC=1;MLEAF=0.500;MQ=27.08;MQ0=8;MQRankSum=-0.504;QD=0.83;ReadPosRankSum=-1.250;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,149:204:99:200,0,168 chrI 206456 . C T 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.208;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.7400;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=13;MQRankSum=0.159;QD=0.99;ReadPosRankSum=-2.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,121:181:99:209,0,168 chrI 206459 . T A 188.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.340;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=17.5954;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=15;MQRankSum=1.038;QD=1.06;ReadPosRankSum=-2.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,105:178:99:218,0,177 chrI 206462 . T C 457 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=29.3997;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=17;QD=2.67;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,171:171:63:490,63,0 chrI 206465 . C T 145.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=29.3997;MLEAC=1;MLEAF=0.500;MQ=26.63;MQ0=17;MQRankSum=0.713;QD=0.87;ReadPosRankSum=5.778;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,45:166:99:175,0,199 chrI 206468 . T C 138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=28.4418;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=18;MQRankSum=-0.718;QD=0.88;ReadPosRankSum=6.714;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,43:157:99:168,0,217 chrI 206469 . C T 413 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.038;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=27.8932;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=19;MQRankSum=0.542;QD=2.87;ReadPosRankSum=2.529;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:26,118:144:57:446,57,0 chrI 206470 . A T 451 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.888;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=46.6897;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=19;MQRankSum=0.682;QD=3.13;ReadPosRankSum=2.577;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:27,117:144:60:484,60,0 chrI 206471 . A G 464 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.999;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=44.7233;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=19;MQRankSum=0.574;QD=3.24;ReadPosRankSum=2.815;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:26,117:143:63:497,63,0 chrI 206480 . C T 247.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.730;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=29.5214;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=19;MQRankSum=-0.695;QD=1.80;ReadPosRankSum=8.065;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,77:137:99:277,0,102 chrI 206487 . G A 314 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.271;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9929;MLEAC=2;MLEAF=1.00;MQ=23.66;MQ0=19;MQRankSum=1.678;QD=3.78;ReadPosRankSum=0.379;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:20,63:83:42:347,42,0 chrI 206489 . G C,T 231.02 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.245;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9494;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.66;MQ0=19;MQRankSum=1.678;QD=2.78;ReadPosRankSum=-0.974;SB=-1.517e-02 GT:AD:DP:GQ:PL 1/2:20,42,21:83:54:291,84,54,207,0,195 chrI 206490 . A T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7815;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=19;MQRankSum=-0.515;QD=0.31;ReadPosRankSum=-0.272;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,21:83:56:56,0,194 chrI 206492 . T C 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9494;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=19;MQRankSum=1.273;QD=0.30;ReadPosRankSum=1.987;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,21:83:55:55,0,201 chrI 206495 . T C 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.4458;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=19;MQRankSum=1.175;QD=0.27;ReadPosRankSum=1.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,21:81:52:52,0,196 chrI 206496 . A G 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.459;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6137;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=19;MQRankSum=2.108;QD=1.97;ReadPosRankSum=-1.716;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:41,37:78:58:184,0,58 chrI 206504 . T A 186.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7815;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=19;QD=2.78;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,47:67:27:219,27,0 chrI 206558 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.601;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=13.7655;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=2;MQRankSum=0.396;QD=0.23;ReadPosRankSum=2.274;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,82:86:6:51,6,0 chrI 206561 . T A 60.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.133;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5808;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=2;MQRankSum=0.089;QD=0.70;ReadPosRankSum=1.643;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,78:86:12:93,12,0 chrI 206564 . G T 245 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.5186;MLEAC=2;MLEAF=1.00;MQ=23.57;MQ0=0;QD=2.63;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:36:278,36,0 chrI 206567 . T A 452 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.586;DP=107;Dels=0.00;FS=2.401;HaplotypeScore=18.8676;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=0;MQRankSum=-0.813;QD=4.22;ReadPosRankSum=2.488;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:4,103:107:47:485,47,0 chrI 206573 . T A 419.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.146;DP=161;Dels=0.00;FS=8.005;HaplotypeScore=39.1889;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=0;MQRankSum=1.848;QD=2.60;ReadPosRankSum=2.382;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:82,73:161:99:449,0,239 chrI 206580 . T A 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=205;Dels=0.00;FS=2.573;HaplotypeScore=55.3564;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;MQRankSum=0.512;QD=10.04;ReadPosRankSum=2.857;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:2092,255,0 chrI 206618 . A G 4299.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.565;DP=356;Dels=0.00;FS=85.708;HaplotypeScore=119.9632;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=3.053;QD=12.08;ReadPosRankSum=6.868;SB=-1.790e+03 GT:AD:DP:GQ:PL 0/1:82,271:356:99:4299,0,287 chrI 206653 . T C 736.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;DP=363;Dels=0.00;FS=39.611;HaplotypeScore=23.8051;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=0;MQRankSum=1.257;QD=2.03;ReadPosRankSum=-0.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:282,81:363:99:766,0,4735 chrI 206675 . A T 1761.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DP=321;Dels=0.00;FS=22.946;HaplotypeScore=174.2384;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=1;MQRankSum=-0.978;QD=5.49;ReadPosRankSum=4.137;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:193,128:321:99:1791,0,241 chrI 206785 . T A 1026.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.198;DP=229;Dels=0.00;FS=24.154;HaplotypeScore=151.6530;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=11;MQRankSum=-2.259;QD=4.48;ReadPosRankSum=-1.612;SB=-5.460e+02 GT:AD:DP:GQ:PL 0/1:58,171:229:99:1056,0,143 chrI 206799 . T G 886 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=92.5550;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=10;QD=6.03;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,143:147:99:919,117,0 chrI 206801 . C A 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.695;DP=146;Dels=0.00;FS=4.562;HaplotypeScore=151.0891;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=9;MQRankSum=0.548;QD=0.23;ReadPosRankSum=5.430;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,31:146:64:64,0,595 chrI 206803 . C T 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.538;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=430.2835;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=8;MQRankSum=0.542;QD=0.61;ReadPosRankSum=0.709;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:90,55:145:99:119,0,590 chrI 206812 . C T 303.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=312.8693;MLEAC=1;MLEAF=0.500;MQ=27.59;MQ0=5;MQRankSum=0.758;QD=2.15;ReadPosRankSum=-3.252;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:99,42:141:99:333,0,163 chrI 206815 . T A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.172;DP=144;Dels=0.00;FS=7.014;HaplotypeScore=318.0637;MLEAC=1;MLEAF=0.500;MQ=27.51;MQ0=5;MQRankSum=0.681;QD=0.16;ReadPosRankSum=1.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,31:144:53:53,0,689 chrI 206825 . C T 150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.641;DP=144;Dels=0.00;FS=9.026;HaplotypeScore=225.6903;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=2;MQRankSum=0.979;QD=1.04;ReadPosRankSum=-3.337;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,67:144:99:180,0,291 chrI 206828 . A T 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;DP=147;Dels=0.00;FS=26.730;HaplotypeScore=188.2097;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=2;MQRankSum=-1.346;QD=0.29;ReadPosRankSum=4.731;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:106,41:147:72:72,0,733 chrI 206831 . C A 262.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.566;DP=154;Dels=0.00;FS=15.183;HaplotypeScore=110.8173;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=4;MQRankSum=-1.698;QD=1.70;ReadPosRankSum=5.051;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:77,75:154:99:292,0,528 chrI 206840 . T C 213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.223;DP=148;Dels=0.00;FS=21.456;HaplotypeScore=65.0149;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=13;MQRankSum=2.920;QD=1.44;ReadPosRankSum=-3.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,49:148:99:243,0,690 chrI 206867 . T C 712 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=81;Dels=0.00;FS=15.480;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=21;MQRankSum=-1.560;QD=8.79;ReadPosRankSum=2.883;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:71:745,71,0 chrI 206889 . G T 842 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.295;DP=101;Dels=0.00;FS=3.065;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.15;MQ0=30;MQRankSum=-0.261;QD=8.34;ReadPosRankSum=2.068;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:9,92:101:99:875,105,0 chrI 206936 . G T 330 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=16;QD=6.11;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:45:363,45,0 chrI 206946 . G A 64.51 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.8487;MLEAC=2;MLEAF=1.00;MQ=15.80;MQ0=13;QD=1.90;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:12:97,12,0 chrI 207022 . T C 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=50;Dels=0.00;FS=9.243;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=13.75;MQ0=22;MQRankSum=1.204;QD=0.30;ReadPosRankSum=2.275;SB=-1.317e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:6:46,6,0 chrI 207035 . G A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=29.9062;MLEAC=1;MLEAF=0.500;MQ=16.23;MQ0=23;MQRankSum=-1.120;QD=0.40;ReadPosRankSum=-0.356;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,13:67:57:57,0,110 chrI 207059 . T A 230.41 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.446;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=18.7313;MLEAC=2;MLEAF=1.00;MQ=14.89;MQ0=36;MQRankSum=0.875;QD=2.71;ReadPosRankSum=0.545;SB=-4.942e+01 GT:AD:DP:GQ:PL 1/1:8,77:85:13:263,13,0 chrI 207068 . A G 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.2480;MLEAC=1;MLEAF=0.500;MQ=14.15;MQ0=35;MQRankSum=-0.643;QD=2.04;ReadPosRankSum=2.658;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:16,62:80:29:193,0,29 chrI 207128 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.98;MQ0=12;QD=0.89;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:6:49,6,0 chrI 207299 . G A 239 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=10.75;MQ0=41;QD=2.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,107:109:33:272,33,0 chrI 207395 . T C 217 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.84;MQ0=36;MQRankSum=0.624;QD=3.56;ReadPosRankSum=1.595;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:33:250,33,0 chrI 207449 . A T 939 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=12.9869;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=9;QD=14.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:972,120,0 chrI 207576 . A G 1124 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.840;DP=215;Dels=0.00;FS=94.457;HaplotypeScore=5.8058;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=82;MQRankSum=2.267;QD=5.23;ReadPosRankSum=4.954;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:11,204:215:99:1157,141,0 chrI 207577 . C T 993 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=82;QD=5.09;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,188:195:99:1026,126,0 chrI 207579 . G A 947 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.63;MQ0=82;QD=5.04;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,188:188:99:980,123,0 chrI 207621 . G A 459 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=6;QD=3.64;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,126:126:60:492,60,0 chrI 207642 . T G 188.01 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=0;QD=2.21;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,85:85:27:221,27,0 chrI 207643 . T G 140.06 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=0;QD=1.65;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,85:85:21:173,21,0 chrI 207683 . G A 136.06 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=1.68;SB=-3.641e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:21:169,21,0 chrI 207685 . T C 185.01 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=0;QD=2.23;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:27:218,27,0 chrI 207686 . T A 209 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=0;QD=2.46;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:30:242,30,0 chrI 208038 . G A 415 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=9;QD=8.30;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:54:448,54,0 chrI 219396 . T C 548 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=21;QD=6.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:72:581,72,0 chrI 219397 . C G 531 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=21;QD=6.32;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:72:564,72,0 chrI 219399 . C T 543 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=21;QD=6.46;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:69:576,69,0 chrI 219453 . G A 161.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=13;QD=3.04;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:24:194,24,0 chrI 219455 . A G 129.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=14;QD=2.44;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,52:53:21:162,21,0 chrI 219462 . C T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.09;MQ0=15;QD=0.89;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:9:71,9,0 chrI 219464 . G C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.93;MQ0=16;QD=0.91;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,44:45:9:73,9,0 chrI 219491 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.56;MQ0=42;QD=0.36;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,50:50:6:49,6,0 chrI 219520 . T C 1467 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.130;DP=114;Dels=0.00;FS=5.182;HaplotypeScore=11.9879;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=43;MQRankSum=0.611;QD=12.87;ReadPosRankSum=3.329;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:5,109:114:99:1500,180,0 chrI 219551 . A C 2113 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=40;QD=15.09;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2146,275,0 chrI 219589 . G A 4078.01 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=9;QD=20.81;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4078,503,0 chrI 219608 . T G 2587 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.06;MQ0=4;QD=19.31;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2620,332,0 chrI 219610 . T A 2552 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=7;QD=19.78;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2585,323,0 chrI 219618 . C T 2222 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.06;MQ0=19;QD=17.36;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2255,284,0 chrI 219669 . C G 32.97 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.80;MQ0=72;QD=0.40;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:0,77:82:9:65,9,0 chrI 219673 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.56;MQ0=77;QD=0.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:6:43,6,0 chrI 219726 . T G 539 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.00;MQ0=103;QD=3.29;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,164:164:72:572,72,0 chrI 219759 . A C 1053 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.68;MQ0=106;MQRankSum=0.816;QD=5.46;ReadPosRankSum=1.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:1086,135,0 chrI 219826 . C A 551 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=12.96;MQ0=83;QD=4.34;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,127:127:75:584,75,0 chrI 219845 . G C 235 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.79;MQ0=92;QD=2.01;SB=-8.666e-03 GT:AD:DP:GQ:PL 1/1:0,116:117:36:268,36,0 chrI 220215 . C T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=0;QD=0.53;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,28:28:6:46,6,0 chrI 220219 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.51;MQ0=0;QD=0.51;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,31:31:6:47,6,0 chrI 220226 . T C 58.51 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.91;MQ0=0;QD=1.24;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:12:91,12,0 chrI 220227 . A G 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.91;MQ0=0;QD=1.27;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:12:92,12,0 chrI 220238 . A G 58.51 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=1;QD=0.84;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,69:70:12:91,12,0 chrI 220244 . G A 61.51 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=6;QD=0.77;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,79:80:12:94,12,0 chrI 220292 . G C 231 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=17.14;MQ0=32;QD=2.24;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,100:103:33:264,33,0 chrI 220328 . C G 162.03 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.18;MQ0=50;QD=2.49;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,65:65:24:195,24,0 chrI 220382 . C A 281 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=23;QD=7.39;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:39:314,39,0 chrI 220409 . G A 512 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=11.5310;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=18;QD=7.11;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,67:72:66:545,66,0 chrI 220464 . T A 2372 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=239;Dels=0.00;FS=5.996;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=11;MQRankSum=-0.969;QD=9.92;ReadPosRankSum=2.969;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:2405,293,0 chrI 220465 . T G 2401 filter AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=11;QD=10.05;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:2434,299,0 chrI 220518 . C T 4204.01 filter AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=12;QD=17.52;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:4204,509,0 chrI 220607 . C T 2812 filter AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=13;QD=17.04;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2845,342,0 chrI 220648 . T C 3782.01 filter AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=8;QD=14.89;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:3782,476,0 chrI 220690 . C T 2690 filter AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=44;QD=10.51;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:2723,335,0 chrI 220805 . C T 594 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.59;MQ0=52;QD=6.53;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:75:627,75,0 chrI 220858 . A C 1291 filter AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=72;QD=8.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:1324,170,0 chrI 221658 . T C 486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.12;MQ0=172;MQRankSum=1.674;QD=2.10;ReadPosRankSum=1.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,229:231:66:519,66,0 chrI 221681 . C T 587 filter AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=11.40;MQ0=134;QD=2.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,248:249:75:620,75,0 chrI 221690 . T C 711 filter AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=3.4511;MLEAC=2;MLEAF=1.00;MQ=12.23;MQ0=132;QD=2.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,272:272:93:744,93,0 chrI 221719 . G A 1885 filter AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=24.6938;MLEAC=2;MLEAF=1.00;MQ=14.73;MQ0=119;QD=5.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,341:345:99:1918,228,0 chrI 221858 . A C 816 filter AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.08;MQ0=134;QD=3.96;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,204:206:99:849,105,0 chrI 221861 . C T 908 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.5253;MLEAC=2;MLEAF=1.00;MQ=12.75;MQ0=129;MQRankSum=-1.365;QD=4.24;ReadPosRankSum=1.691;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,213:214:99:941,114,0 chrI 222095 . C T 385 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=12.00;MQ0=82;QD=2.47;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:0,154:156:54:418,54,0 chrI 222114 . T C 422 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.49;MQ0=57;QD=2.91;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:1,143:145:54:455,54,0 chrI 222136 . C T 401 filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=13.73;MQ0=59;QD=2.48;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,162:162:51:434,51,0 chrI 222280 . C T 66.51 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=2.66;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:12:99,12,0 chrI 222308 . T A 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.149;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;MQRankSum=0.611;QD=2.01;ReadPosRankSum=4.149;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:7,38:45:15:123,15,0 chrI 222313 . C T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.774;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;MQRankSum=0.924;QD=0.33;ReadPosRankSum=-4.181;SB=1.24 GT:AD:DP:GQ:PL 1/1:38,7:45:6:46,6,0 chrI 222380 . C T 2657 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=19.5856;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=55;QD=6.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,388:388:99:2690,321,0 chrI 222525 . G C 3220.05 filter AC=2;AF=1.00;AN=2;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=13.6456;MLEAC=2;MLEAF=1.00;MQ=18.39;MQ0=173;QD=8.61;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,371:374:99:3253,407,0 chrI 222583 . C T 12204.01 filter AC=2;AF=1.00;AN=2;DP=693;Dels=0.00;FS=0.000;HaplotypeScore=8.2983;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=15;QD=17.61;SB=-5.709e+03 GT:AD:DP:GQ:PL 1/1:0,692:693:99:12204,1436,0 chrI 222605 . T C 9687.01 filter AC=2;AF=1.00;AN=2;DP=634;Dels=0.00;FS=0.000;HaplotypeScore=3.4918;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=67;QD=15.28;SB=-4.534e+03 GT:AD:DP:GQ:PL 1/1:4,625:634:99:9687,1241,0 chrI 222656 . A G 3571.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=434;Dels=0.00;FS=0.000;HaplotypeScore=25.2813;MLEAC=2;MLEAF=1.00;MQ=17.91;MQ0=237;MQRankSum=-0.467;QD=8.23;ReadPosRankSum=2.412;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,431:434:99:3571,446,0 chrI 222857 . T C 1068 filter AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=18.59;MQ0=120;QD=5.24;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,199:204:99:1101,141,0 chrI 222901 . C T 89.26 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.25;MQ0=129;QD=0.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,138:141:15:122,15,0 chrI 222934 . C G 387 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.44;MQ0=85;QD=3.65;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:51:420,51,0 chrI 222960 . G A 922 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.54;MQ0=53;QD=9.41;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:955,117,0 chrI 222985 . G A 1360 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=21;QD=15.81;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1393,165,0 chrI 223239 . G A 915 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=196.3612;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=6;QD=11.02;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:948,117,0 chrI 223283 . G A 238 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=8;QD=11.33;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:1,20:21:33:271,33,0 chrI 223288 . G A 193.01 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=5;QD=11.35;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:27:226,27,0 chrI 223297 . G T 96.26 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.85;MQ0=7;QD=6.02;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:15:129,15,0 chrI 223346 . C A 93.26 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.48;MQ0=21;QD=3.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:15:126,15,0 chrI 223349 . G A 66.51 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.79;MQ0=20;QD=2.15;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,30:31:12:99,12,0 chrI 223359 . A G 138.06 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.13;MQ0=25;QD=2.94;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,47:47:21:171,21,0 chrI 223435 . T C 75.26 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=14.79;MQ0=9;QD=1.21;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,61:62:15:108,15,0 chrI 223446 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.42;MQ0=5;QD=0.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:6:43,6,0 chrI 223448 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.61;MQ0=2;MQRankSum=0.267;QD=0.43;ReadPosRankSum=1.600;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:6:43,6,0 chrI 223450 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.17;MQ0=0;QD=0.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:6:43,6,0 chrI 223451 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.17;MQ0=0;QD=0.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:6:43,6,0 chrI 223452 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.17;MQ0=0;QD=0.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:6:43,6,0 chrI 225711 . A G 438 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=15;QD=10.19;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:60:471,60,0 chrI 225727 . A G 452 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.59;MQ0=5;QD=13.70;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:60:485,60,0 chrI 225738 . C T 314 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.34;MQ0=0;QD=18.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:42:347,42,0 chrI 225741 . A G 254 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=0;QD=19.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:36:287,36,0 chrI 225745 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=7.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:47,6,0 chrI 225843 . A G 37.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.68;MQ0=1;QD=2.71;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:70,9,0 chrI 225849 . C A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.16;MQ0=5;QD=1.77;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:71,9,0 chrI 225858 . C G 136.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.89;MQ0=10;QD=4.12;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:21:169,21,0 chrI 225859 . A G 160.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.86;MQ0=12;QD=4.45;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,34:36:24:193,24,0 chrI 225879 . C T 215 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.22;MQ0=47;QD=2.95;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,73:73:30:248,30,0 chrI 226344 . T C 2227 filter AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=17.05;MQ0=93;QD=8.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:2260,281,0 chrI 226512 . C T 8034.01 filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=16;QD=20.39;SB=-3.237e+03 GT:AD:DP:GQ:PL 1/1:0,393:394:99:8034,962,0 chrI 226631 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.60;MQ0=118;QD=0.33;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:5,124:129:9:75,9,0 chrI 226639 . G A 135.06 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.20;MQ0=103;QD=1.11;SB=-7.004e+01 GT:AD:DP:GQ:PL 1/1:0,122:122:21:168,21,0 chrI 226704 . C T 980 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=19.29;MQ0=20;QD=8.67;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1013,120,0 chrI 226881 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrI 226898 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrI 228050 . T C 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.000;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=16.17;MQ0=29;MQRankSum=1.209;QD=0.78;ReadPosRankSum=3.000;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:4,46:50:9:71,9,0 chrI 228063 . G A 145.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=1;MLEAF=0.500;MQ=10.71;MQ0=73;MQRankSum=-0.567;QD=1.56;ReadPosRankSum=-0.441;SB=-2.493e+01 GT:AD:DP:GQ:PL 0/1:18,71:93:19:175,0,19 chrI 228164 . G A 670.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.000;DP=152;Dels=0.00;FS=3.384;HaplotypeScore=10.8322;MLEAC=1;MLEAF=0.500;MQ=18.39;MQ0=67;MQRankSum=0.101;QD=4.41;ReadPosRankSum=-0.031;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:76,76:152:99:700,0,874 chrI 228172 . A G 791.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;DP=137;Dels=0.00;FS=10.153;HaplotypeScore=12.7888;MLEAC=1;MLEAF=0.500;MQ=19.49;MQ0=51;MQRankSum=0.939;QD=5.77;ReadPosRankSum=-1.320;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,68:137:99:821,0,510 chrI 228173 . T C 837.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DP=135;Dels=0.00;FS=10.153;HaplotypeScore=12.7888;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=49;MQRankSum=0.117;QD=6.20;ReadPosRankSum=-1.199;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,66:135:99:867,0,670 chrI 228174 . G T 390.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.7888;MLEAC=1;MLEAF=0.500;MQ=19.70;MQ0=48;MQRankSum=0.166;QD=2.91;ReadPosRankSum=1.971;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,44:134:99:420,0,893 chrI 228175 . G C 648.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.204;DP=132;Dels=0.00;FS=10.153;HaplotypeScore=12.7888;MLEAC=1;MLEAF=0.500;MQ=19.85;MQ0=46;MQRankSum=1.442;QD=4.91;ReadPosRankSum=1.043;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:66,66:132:99:678,0,928 chrI 228182 . A G 695.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.995;DP=127;Dels=0.00;FS=19.129;HaplotypeScore=12.7888;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=35;MQRankSum=3.190;QD=5.47;ReadPosRankSum=-0.449;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:60,67:127:99:725,0,882 chrI 228197 . G A 815.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.196;DP=170;Dels=0.00;FS=39.637;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=45;MQRankSum=-2.776;QD=4.79;ReadPosRankSum=0.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,54:170:99:845,0,1121 chrI 228199 . C A 2743 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=23.80;MQ0=45;MQRankSum=-0.718;QD=16.33;ReadPosRankSum=1.056;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2776,324,0 chrI 228378 . C T 1938 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=18;QD=19.00;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1971,231,0 chrI 228420 . C A 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=20.74;MQ0=31;MQRankSum=-0.913;QD=3.70;ReadPosRankSum=-0.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,38:74:99:304,0,194 chrI 228446 . G C 373 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.98;MQ0=28;QD=7.61;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:51:406,51,0 chrI 228485 . G T 217.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=46;MQRankSum=0.840;QD=2.47;ReadPosRankSum=-0.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,33:88:99:247,0,244 chrI 228491 . G T 602 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=39;QD=8.48;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:75:635,75,0 chrI 228564 . G A 433 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=13;QD=8.49;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:8,43:51:57:466,57,0 chrI 228767 . T C 396 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.568;DP=59;Dels=0.00;FS=2.538;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=14.85;MQ0=22;MQRankSum=-3.253;QD=6.71;ReadPosRankSum=3.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,55:59:54:429,54,0 chrI 228936 . T C 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.23;MQ0=9;MQRankSum=-0.839;QD=1.65;ReadPosRankSum=1.097;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,7:23:68:68,0,98 chrI 228958 . C T 118.13 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.77;MQ0=15;QD=3.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:18:151,18,0 chrI 229002 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.41;MQ0=19;QD=0.54;SB=-2.680e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:6:49,6,0 chrI 229086 . C T 752 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=12;QD=9.28;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:785,104,0 chrI 229092 . A G 743 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=12;QD=9.17;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:776,104,0 chrI 229098 . C T 758 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=12;QD=9.36;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:791,104,0 chrI 229104 . C A 752 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.33;MQ0=10;QD=9.52;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:785,104,0 chrI 229275 . T C 358 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.48;MQ0=0;QD=11.93;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:54:391,54,0 chrI 229279 . A C 176.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.46;MQ0=0;MQRankSum=1.012;QD=5.68;ReadPosRankSum=1.961;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,20:31:95:206,0,95 chrI 229284 . C T 381 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.46;MQ0=0;QD=12.29;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:57:414,57,0 chrI 229293 . C T 404 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.46;MQ0=0;QD=13.03;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:60:437,60,0 chrI 229302 . A G 402 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.46;MQ0=0;QD=12.97;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:60:435,60,0 chrI 229303 . C T 195.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.273;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.46;MQ0=0;MQRankSum=-0.640;QD=6.29;ReadPosRankSum=-1.837;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,20:31:92:225,0,92 chrI 229329 . G C 335 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=0;QD=12.41;SB=-6.580e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:51:368,51,0 chrI 229335 . T C 335 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.54;MQ0=0;QD=13.40;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:51:368,51,0 chrI 229338 . T C 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.72;MQ0=0;MQRankSum=0.532;QD=4.95;ReadPosRankSum=0.456;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,9:20:99:129,0,107 chrI 229340 . C A 270 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=0;QD=13.50;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:42:303,42,0 chrI 229345 . G T 140.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=10.00;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:173,24,0 chrII 57 . A G 48.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=16.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:81,9,0 chrII 102 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=3;QD=19.54;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,95:101:99:2007,228,0 chrII 103 . T C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.058;DP=113;Dels=0.00;FS=14.625;HaplotypeScore=4.2988;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=3;MQRankSum=-3.073;QD=16.63;ReadPosRankSum=5.633;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:12,101:113:99:1912,225,0 chrII 173 . A G 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=11.865;HaplotypeScore=406.1886;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=3;MQRankSum=-1.220;QD=25.79;ReadPosRankSum=1.712;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4436,489,0 chrII 196 . G A 2643 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=1;QD=25.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2676,294,0 chrII 200 . T A 2114 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=1;MQRankSum=1.067;QD=23.23;ReadPosRankSum=1.282;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,87:91:99:2147,258,0 chrII 255 . C G 47.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=2;QD=9.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:9:80,9,0 chrII 307 . T C 1502 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=2;QD=20.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1535,177,0 chrII 321 . T A 218.01 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=2;QD=1.82;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,120:120:27:251,27,0 chrII 401 . C T 1016 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=4;QD=11.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1049,114,0 chrII 1330 . G C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.031;DP=525;Dels=0.00;FS=0.000;HaplotypeScore=49.4637;MLEAC=1;MLEAF=0.500;MQ=10.12;MQ0=81;MQRankSum=0.622;QD=0.07;ReadPosRankSum=-0.243;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:437,81:525:67:67,0,385 chrII 1507 . G A 507 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=2;QD=6.11;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:63:540,63,0 chrII 1521 . A G 945 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=2;QD=6.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:978,114,0 chrII 1543 . G A 1313 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=1;QD=5.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:1346,156,0 chrII 1547 . T C 1320 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.456;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=1;MQRankSum=-0.472;QD=5.02;ReadPosRankSum=6.353;SB=3.54 GT:AD:DP:GQ:PL 1/1:32,231:263:99:1353,143,0 chrII 1553 . C T 1441 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.255;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=1;MQRankSum=-0.247;QD=5.48;ReadPosRankSum=4.869;SB=3.00 GT:AD:DP:GQ:PL 1/1:31,232:263:99:1474,146,0 chrII 1600 . A G 586.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=246.5285;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=5.491;QD=1.71;ReadPosRankSum=3.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,123:342:99:616,0,602 chrII 1603 . T A 617.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.758;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=167.6405;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=0;MQRankSum=5.908;QD=1.88;ReadPosRankSum=7.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:214,114:328:99:647,0,629 chrII 1604 . T G 645.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.621;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=128.1033;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=5.839;QD=2.00;ReadPosRankSum=7.705;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,114:321:99:675,0,615 chrII 1606 . G A 656.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.202;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=49.3845;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=1;MQRankSum=5.996;QD=2.04;ReadPosRankSum=8.342;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:201,118:320:99:686,0,551 chrII 1642 . A G 1119.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.118;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=5.1676;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=2;MQRankSum=-1.416;QD=3.35;ReadPosRankSum=5.711;SB=-1.457e+00 GT:AD:DP:GQ:PL 0/1:31,302:334:1:1148,0,1 chrII 1651 . C A 1616 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=153.6931;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=2;QD=4.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,366:366:99:1649,198,0 chrII 1655 . C T 302.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.689;DP=390;Dels=0.00;FS=0.000;HaplotypeScore=114.7400;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=2;MQRankSum=-6.109;QD=0.77;ReadPosRankSum=-5.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,211:390:99:332,0,1008 chrII 1670 . A G 231.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;DP=397;Dels=0.00;FS=0.000;HaplotypeScore=94.4228;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=2;MQRankSum=2.808;QD=0.58;ReadPosRankSum=6.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:287,110:397:99:261,0,849 chrII 1672 . G A 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=94.4228;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=2;MQRankSum=2.632;QD=0.25;ReadPosRankSum=7.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:297,92:389:99:127,0,1154 chrII 1675 . A G 984.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.006;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=94.4228;MLEAC=1;MLEAF=0.500;MQ=23.45;MQ0=2;MQRankSum=-4.699;QD=2.94;ReadPosRankSum=-5.882;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:52,243:335:69:1014,0,69 chrII 1687 . A C 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.436;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=69.6188;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=1;MQRankSum=5.050;QD=0.24;ReadPosRankSum=-5.932;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:223,62:286:98:98,0,625 chrII 1691 . T C 128.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.199;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=68.0276;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=1;MQRankSum=-4.593;QD=0.47;ReadPosRankSum=1.720;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,74:274:99:158,0,644 chrII 1696 . G C 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.496;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=50.5791;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=1;MQRankSum=-3.764;QD=0.46;ReadPosRankSum=0.997;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,75:235:99:138,0,607 chrII 1697 . T C 909 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=48.5991;MLEAC=2;MLEAF=1.00;MQ=22.25;MQ0=1;MQRankSum=-0.060;QD=3.90;ReadPosRankSum=1.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,232:233:98:942,98,0 chrII 1700 . G A 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.442;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.9483;MLEAC=1;MLEAF=0.500;MQ=22.15;MQ0=1;MQRankSum=-3.655;QD=0.53;ReadPosRankSum=1.444;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,76:227:99:150,0,560 chrII 1701 . A C 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.814;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.9483;MLEAC=1;MLEAF=0.500;MQ=22.22;MQ0=1;MQRankSum=-3.838;QD=0.55;ReadPosRankSum=1.207;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,77:223:99:152,0,512 chrII 1704 . C T 899 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=24.8105;MLEAC=2;MLEAF=1.00;MQ=21.83;MQ0=1;QD=3.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:932,114,0 chrII 1715 . G T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=22.2597;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=0;MQRankSum=8.172;QD=0.06;ReadPosRankSum=-1.658;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,41:244:44:44,0,475 chrII 1727 . C T 287.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.530;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.4646;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=0;MQRankSum=-0.097;QD=1.54;ReadPosRankSum=0.638;SB=-4.984e-02 GT:AD:DP:GQ:PL 1/1:3,183:186:23:320,23,0 chrII 1733 . T C 149.19 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=37.5505;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=0;MQRankSum=-0.454;QD=0.93;ReadPosRankSum=2.780;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:6,154:160:8:181,8,0 chrII 1737 . A C 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=53.7204;MLEAC=1;MLEAF=0.500;MQ=18.90;MQ0=0;MQRankSum=1.998;QD=0.22;ReadPosRankSum=1.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,39:148:63:63,0,74 chrII 1750 . A G 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.995;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=61.8044;MLEAC=1;MLEAF=0.500;MQ=19.43;MQ0=0;MQRankSum=-2.333;QD=1.04;ReadPosRankSum=-1.497;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,96:136:95:172,0,95 chrII 1771 . A G 257 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=9.8158;MLEAC=2;MLEAF=1.00;MQ=19.72;MQ0=0;MQRankSum=-0.817;QD=4.28;ReadPosRankSum=2.367;SB=-8.265e-03 GT:AD:DP:GQ:PL 1/1:2,57:59:36:290,36,0 chrII 1778 . A G 262 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=14.9630;MLEAC=2;MLEAF=1.00;MQ=22.79;MQ0=2;QD=2.94;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,84:89:36:295,36,0 chrII 1786 . A G 663.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DP=332;Dels=0.00;FS=67.952;HaplotypeScore=148.9874;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=8;MQRankSum=-0.103;QD=2.00;ReadPosRankSum=8.938;SB=-4.810e+02 GT:AD:DP:GQ:PL 0/1:133,172:332:99:693,0,1159 chrII 1799 . C T 5045.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.720;DP=998;DS;Dels=0.00;FS=92.417;HaplotypeScore=214.8189;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=9;MQRankSum=-5.582;QD=5.06;ReadPosRankSum=4.021;SB=-1.376e+03 GT:AD:DP:GQ:PL 0/1:535,462:998:99:5045,0,6611 chrII 1814 . A G 4696.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.373;DP=999;DS;Dels=0.00;FS=5.999;HaplotypeScore=182.8753;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=2;MQRankSum=8.234;QD=4.70;ReadPosRankSum=2.366;SB=-2.911e+03 GT:AD:DP:GQ:PL 0/1:632,356:999:99:4696,0,7268 chrII 1835 . C T 2431.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=15.216;DP=1000;DS;Dels=0.00;FS=18.228;HaplotypeScore=9.9025;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=4;MQRankSum=-11.909;QD=2.43;ReadPosRankSum=-0.280;SB=-7.790e+02 GT:AD:DP:GQ:PL 0/1:606,393:1000:99:2461,0,10316 chrII 1850 . G A 2391.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.370;DP=1000;DS;Dels=0.00;FS=18.955;HaplotypeScore=110.5992;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=4;MQRankSum=-11.207;QD=2.39;ReadPosRankSum=-0.310;SB=-1.084e+03 GT:AD:DP:GQ:PL 0/1:605,395:1000:99:2421,0,10415 chrII 1888 . G A 569.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;DP=723;DS;Dels=0.00;FS=2.561;HaplotypeScore=119.3382;MLEAC=1;MLEAF=0.500;MQ=24.22;MQ0=0;MQRankSum=0.989;QD=0.79;ReadPosRankSum=-7.323;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:595,128:723:99:599,0,6773 chrII 1894 . A G 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;DP=583;DS;Dels=0.00;FS=50.929;HaplotypeScore=132.6574;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=0;MQRankSum=1.316;QD=0.11;ReadPosRankSum=1.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:515,68:583:96:96,0,5288 chrII 1917 . A C 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DP=451;DS;Dels=0.00;FS=180.644;HaplotypeScore=216.0884;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=0;MQRankSum=3.193;QD=0.22;ReadPosRankSum=2.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,185:451:99:129,0,4228 chrII 1918 . G A 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.539;DP=450;DS;Dels=0.00;FS=196.366;HaplotypeScore=217.9971;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=0;MQRankSum=3.644;QD=0.17;ReadPosRankSum=2.320;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,182:450:99:108,0,4427 chrII 1925 . G C 2421.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;DP=487;DS;Dels=0.00;FS=138.616;HaplotypeScore=340.0595;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=10.870;QD=4.97;ReadPosRankSum=-4.554;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:323,162:487:99:2451,0,2387 chrII 1927 . C T 2272.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.903;DP=492;DS;Dels=0.00;FS=134.572;HaplotypeScore=336.5619;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=0;MQRankSum=10.041;QD=4.62;ReadPosRankSum=-3.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:330,160:492:99:2302,0,2415 chrII 1928 . G T 2275.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.299;DP=499;DS;Dels=0.00;FS=130.628;HaplotypeScore=270.6197;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=10.431;QD=4.56;ReadPosRankSum=-3.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:339,160:499:99:2305,0,2602 chrII 1930 . A G 2210.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.855;DP=506;DS;Dels=0.00;FS=134.104;HaplotypeScore=213.0394;MLEAC=1;MLEAF=0.500;MQ=25.65;MQ0=0;MQRankSum=8.503;QD=4.37;ReadPosRankSum=-3.147;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:338,166:504:99:2240,0,2604 chrII 1931 . T G 544.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.047;DP=509;DS;Dels=0.00;FS=51.530;HaplotypeScore=201.3459;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=0;MQRankSum=5.971;QD=1.07;ReadPosRankSum=-6.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:435,72:508:99:574,0,4321 chrII 1933 . G A 658.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.984;DP=527;DS;Dels=0.00;FS=215.136;HaplotypeScore=206.8085;MLEAC=1;MLEAF=0.500;MQ=25.70;MQ0=0;MQRankSum=1.280;QD=1.25;ReadPosRankSum=0.801;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:285,242:527:99:688,0,4568 chrII 1937 . G C 2377.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.074;DP=564;DS;Dels=0.00;FS=163.601;HaplotypeScore=211.5361;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=0;MQRankSum=-6.546;QD=4.21;ReadPosRankSum=4.524;SB=-1.590e+03 GT:AD:DP:GQ:PL 0/1:232,332:564:99:2407,0,3283 chrII 1943 . C T 7369.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.931;DP=596;DS;Dels=0.00;FS=18.187;HaplotypeScore=241.1974;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=0;MQRankSum=2.597;QD=12.36;ReadPosRankSum=8.263;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:36,560:596:99:7369,482,0 chrII 1945 . A G 2450.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.198;DP=603;DS;Dels=0.00;FS=170.185;HaplotypeScore=180.0868;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=-7.283;QD=4.06;ReadPosRankSum=0.172;SB=-1.595e+03 GT:AD:DP:GQ:PL 0/1:254,349:603:99:2480,0,3826 chrII 1960 . G A 3455.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.326;DP=673;Dels=0.00;FS=82.291;HaplotypeScore=300.7571;MLEAC=1;MLEAF=0.500;MQ=25.47;MQ0=0;MQRankSum=-4.900;QD=5.13;ReadPosRankSum=-9.878;SB=-1.121e+03 GT:AD:DP:GQ:PL 0/1:240,433:673:99:3455,0,3291 chrII 1963 . G A 2386.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;DP=674;Dels=0.00;FS=85.840;HaplotypeScore=254.2949;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=0;MQRankSum=-4.877;QD=3.54;ReadPosRankSum=-8.813;SB=-9.700e+02 GT:AD:DP:GQ:PL 0/1:247,360:674:99:2416,0,3492 chrII 1966 . A G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;DP=678;Dels=0.00;FS=17.837;HaplotypeScore=205.8603;MLEAC=1;MLEAF=0.500;MQ=25.47;MQ0=0;MQRankSum=5.536;QD=0.03;ReadPosRankSum=0.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:611,67:678:49:49,0,6779 chrII 1989 . A C 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;DP=505;Dels=0.00;FS=16.942;HaplotypeScore=94.2464;MLEAC=1;MLEAF=0.500;MQ=25.42;MQ0=0;MQRankSum=3.896;QD=0.27;ReadPosRankSum=9.571;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:416,89:505:99:165,0,5208 chrII 1990 . G A 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.580;DP=490;Dels=0.00;FS=19.342;HaplotypeScore=118.0377;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=0;MQRankSum=4.124;QD=0.32;ReadPosRankSum=7.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:394,96:490:99:189,0,5076 chrII 2005 . G A 580.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;DP=318;Dels=0.01;FS=0.000;HaplotypeScore=178.6677;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=0;MQRankSum=3.997;QD=1.82;ReadPosRankSum=2.801;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,104:315:99:610,0,2095 chrII 2011 . G A 771.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=267;Dels=0.01;FS=0.000;HaplotypeScore=290.4297;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=0;MQRankSum=5.202;QD=2.89;ReadPosRankSum=-3.043;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,113:264:99:801,0,1792 chrII 2033 . C G 841.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.873;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=223.0300;MLEAC=1;MLEAF=0.500;MQ=21.89;MQ0=5;MQRankSum=-2.085;QD=4.72;ReadPosRankSum=10.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,73:178:99:871,0,213 chrII 2035 . T C,G 1040.20 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.922;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=26.0797;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.39;MQ0=5;MQRankSum=2.679;QD=6.30;ReadPosRankSum=1.844;SB=-1.197e+00 GT:AD:DP:GQ:PL 1/2:8,73,40:165:32:1099,172,32,927,0,900 chrII 2036 . T G 1378 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=123.6765;MLEAC=2;MLEAF=1.00;MQ=21.39;MQ0=5;MQRankSum=2.650;QD=8.35;ReadPosRankSum=1.011;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,156:165:99:1411,182,0 chrII 2039 . G T 960.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.483;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=124.0749;MLEAC=1;MLEAF=0.500;MQ=22.53;MQ0=5;MQRankSum=-0.477;QD=4.00;ReadPosRankSum=10.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,107:240:99:990,0,253 chrII 2041 . G A 839.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.284;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=256.9422;MLEAC=1;MLEAF=0.500;MQ=22.74;MQ0=5;MQRankSum=-1.631;QD=3.40;ReadPosRankSum=12.108;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,73:247:99:869,0,447 chrII 2045 . G C 776.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.197;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=175.6538;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=5;MQRankSum=-1.674;QD=2.55;ReadPosRankSum=8.989;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,100:304:99:806,0,1052 chrII 2047 . C A 2266 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.697;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=178.6215;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=5;MQRankSum=0.922;QD=7.68;ReadPosRankSum=9.472;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,261:295:99:2299,213,0 chrII 2051 . C T 901.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.568;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=142.8158;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=5;MQRankSum=-3.464;QD=2.53;ReadPosRankSum=0.690;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,183:356:99:931,0,1605 chrII 2053 . A G 661.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.879;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=142.8158;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=5;MQRankSum=-2.828;QD=1.80;ReadPosRankSum=6.238;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,118:367:99:691,0,2029 chrII 2066 . A G 4956.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.244;DP=429;Dels=0.00;FS=0.000;HaplotypeScore=26.9739;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=5;MQRankSum=1.033;QD=11.55;ReadPosRankSum=1.317;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:21,407:429:99:4956,503,0 chrII 2068 . G A 180.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.622;DP=444;Dels=0.00;FS=0.000;HaplotypeScore=24.3594;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=7;MQRankSum=-6.055;QD=0.41;ReadPosRankSum=-1.093;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:316,126:444:99:210,0,3940 chrII 2071 . G A 208.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.167;DP=476;Dels=0.00;FS=5.009;HaplotypeScore=25.3461;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=7;MQRankSum=-5.052;QD=0.44;ReadPosRankSum=-3.811;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:326,150:476:99:238,0,4019 chrII 2110 . A G 5372.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.889;DP=495;Dels=0.00;FS=0.000;HaplotypeScore=57.6186;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=13;MQRankSum=2.227;QD=10.85;ReadPosRankSum=2.128;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,483:495:99:5372,556,0 chrII 2119 . C A 5331.01 filter AC=2;AF=1.00;AN=2;DP=466;Dels=0.00;FS=0.000;HaplotypeScore=454.1796;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=9;QD=11.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,464:466:99:5331,600,0 chrII 2123 . C T 5565.01 filter AC=2;AF=1.00;AN=2;DP=453;Dels=0.00;FS=0.000;HaplotypeScore=964.2696;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=9;QD=12.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,452:453:99:5565,606,0 chrII 2145 . C T 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=265;Dels=0.00;FS=8.440;HaplotypeScore=624.7679;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=22;MQRankSum=-2.984;QD=0.08;ReadPosRankSum=4.108;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:205,60:265:51:51,0,1353 chrII 2147 . G T 1080.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.373;DP=265;Dels=0.00;FS=23.690;HaplotypeScore=91.7697;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=23;MQRankSum=6.768;QD=4.08;ReadPosRankSum=-5.383;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,143:265:99:1110,0,307 chrII 2155 . A C 927.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.895;DP=269;Dels=0.00;FS=64.369;HaplotypeScore=81.4360;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=42;MQRankSum=8.145;QD=3.45;ReadPosRankSum=-10.105;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,139:269:99:957,0,202 chrII 2159 . T C 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;DP=252;Dels=0.00;FS=13.420;HaplotypeScore=97.0973;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=41;MQRankSum=-3.345;QD=0.06;ReadPosRankSum=6.886;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,42:252:45:45,0,1146 chrII 2164 . G A,C 736.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.168;DP=171;Dels=0.00;FS=91.432;HaplotypeScore=56.5179;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.27;MQ0=39;MQRankSum=6.104;QD=4.30;ReadPosRankSum=-6.104;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:55,87,29:171:99:796,187,128,593,0,582 chrII 2168 . G A 96.46 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.954;DP=111;Dels=0.00;FS=9.737;HaplotypeScore=71.2824;MLEAC=1;MLEAF=0.500;MQ=18.34;MQ0=39;MQRankSum=-0.204;QD=0.87;ReadPosRankSum=2.712;SB=-1.459e+00 GT:AD:DP:GQ:PL 0/1:99,12:111:1:125,0,1 chrII 2169 . A C 103.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.954;DP=103;Dels=0.00;FS=56.226;HaplotypeScore=56.1952;MLEAC=2;MLEAF=1.00;MQ=18.37;MQ0=38;MQRankSum=3.336;QD=1.00;ReadPosRankSum=-0.309;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:68,35:103:18:136,18,0 chrII 5876 . T A 72.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=47.0619;MLEAC=2;MLEAF=1.00;MQ=17.18;MQ0=0;MQRankSum=-1.567;QD=0.82;ReadPosRankSum=1.880;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:3,81:88:12:105,12,0 chrII 5894 . G C 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.982;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=69.0675;MLEAC=1;MLEAF=0.500;MQ=20.14;MQ0=6;MQRankSum=5.753;QD=0.58;ReadPosRankSum=-3.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,66:205:99:149,0,145 chrII 5900 . C G 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=218.3231;MLEAC=1;MLEAF=0.500;MQ=20.43;MQ0=7;MQRankSum=6.059;QD=0.78;ReadPosRankSum=-4.471;SB=-6.863e-03 GT:AD:DP:GQ:PL 0/1:140,76:216:38:198,0,38 chrII 5927 . T C 449.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=72.9008;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=10;MQRankSum=7.628;QD=1.40;ReadPosRankSum=-1.471;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,141:321:99:479,0,166 chrII 5933 . T C 1015 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=112.8329;MLEAC=2;MLEAF=1.00;MQ=21.82;MQ0=11;MQRankSum=1.810;QD=3.10;ReadPosRankSum=2.959;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:4,323:327:99:1048,129,0 chrII 5943 . T C 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=23.3508;MLEAC=1;MLEAF=0.500;MQ=22.03;MQ0=13;MQRankSum=-7.167;QD=0.49;ReadPosRankSum=-1.489;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:216,115:331:99:193,0,662 chrII 5957 . A G 534.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.078;DP=295;Dels=0.00;FS=3.025;HaplotypeScore=131.1597;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=12;MQRankSum=4.212;QD=1.81;ReadPosRankSum=5.207;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,142:295:99:564,0,298 chrII 5965 . C G 637 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.232;DP=272;Dels=0.00;FS=8.068;HaplotypeScore=114.7805;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=12;MQRankSum=4.630;QD=2.34;ReadPosRankSum=3.062;SB=3.00 GT:AD:DP:GQ:PL 1/1:104,168:272:63:670,63,0 chrII 5972 . C G 528.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.652;DP=268;Dels=0.00;FS=6.106;HaplotypeScore=143.8812;MLEAC=1;MLEAF=0.500;MQ=22.83;MQ0=12;MQRankSum=4.219;QD=1.97;ReadPosRankSum=4.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,131:268:99:558,0,262 chrII 5980 . C A 248.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DP=250;Dels=0.00;FS=2.645;HaplotypeScore=143.8589;MLEAC=1;MLEAF=0.500;MQ=23.43;MQ0=12;MQRankSum=-3.503;QD=0.99;ReadPosRankSum=0.233;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,83:250:99:278,0,152 chrII 5989 . A G 291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=206;Dels=0.00;FS=2.896;HaplotypeScore=172.0776;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=7;MQRankSum=-3.379;QD=1.41;ReadPosRankSum=1.098;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,81:205:99:321,0,455 chrII 6000 . T C 214.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=97.2262;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=1;MQRankSum=2.660;QD=1.54;ReadPosRankSum=-2.753;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,71:139:99:244,0,304 chrII 6002 . A C 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.487;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=102.2217;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=1;MQRankSum=2.566;QD=1.50;ReadPosRankSum=-3.558;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,71:139:99:239,0,308 chrII 6018 . C T 267.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.443;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=14.8261;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=1;MQRankSum=-1.011;QD=2.32;ReadPosRankSum=5.881;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,71:115:83:297,0,83 chrII 6034 . G C 311 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=3.89;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:42:344,42,0 chrII 6041 . T C 262 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=0;MQRankSum=-0.737;QD=3.64;ReadPosRankSum=2.381;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,70:72:36:295,36,0 chrII 6046 . T C 174.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4955;MLEAC=1;MLEAF=0.500;MQ=24.85;MQ0=0;MQRankSum=-1.815;QD=2.76;ReadPosRankSum=3.489;SB=-1.954e-02 GT:AD:DP:GQ:PL 0/1:10,53:63:20:204,0,20 chrII 6047 . T C 253 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.622;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.6935;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;MQRankSum=-0.076;QD=3.72;ReadPosRankSum=3.968;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:6,62:68:33:286,33,0 chrII 6052 . A G 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.603;DP=84;Dels=0.00;FS=10.517;HaplotypeScore=19.6202;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=1;MQRankSum=-2.803;QD=2.17;ReadPosRankSum=6.387;SB=0.037 GT:AD:DP:GQ:PL 0/1:26,57:84:99:212,0,131 chrII 6070 . A C 765.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DP=258;Dels=0.00;FS=8.955;HaplotypeScore=46.3851;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=16;MQRankSum=-4.212;QD=2.97;ReadPosRankSum=-3.205;SB=-6.310e+02 GT:AD:DP:GQ:PL 0/1:54,194:258:99:795,0,552 chrII 6072 . T C 586.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;DP=272;Dels=0.00;FS=2.944;HaplotypeScore=40.0418;MLEAC=1;MLEAF=0.500;MQ=21.46;MQ0=16;MQRankSum=4.214;QD=2.15;ReadPosRankSum=4.598;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:216,55:272:99:616,0,795 chrII 6116 . T A 7003.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.120;DP=589;Dels=0.00;FS=19.847;HaplotypeScore=74.6335;MLEAC=2;MLEAF=1.00;MQ=21.43;MQ0=34;MQRankSum=-0.586;QD=11.89;ReadPosRankSum=4.207;SB=-4.708e+03 GT:AD:DP:GQ:PL 1/1:8,581:589:99:7003,844,0 chrII 6130 . T C 4645.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.037;DP=696;Dels=0.00;FS=4.091;HaplotypeScore=15.6327;MLEAC=1;MLEAF=0.500;MQ=21.60;MQ0=37;MQRankSum=6.130;QD=6.67;ReadPosRankSum=-3.112;SB=-2.883e+03 GT:AD:DP:GQ:PL 0/1:329,365:696:99:4645,0,2629 chrII 6143 . G T 1666.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.074;DP=684;Dels=0.00;FS=3.817;HaplotypeScore=6.8766;MLEAC=1;MLEAF=0.500;MQ=21.80;MQ0=36;MQRankSum=-6.432;QD=2.44;ReadPosRankSum=-1.797;SB=-1.085e+03 GT:AD:DP:GQ:PL 0/1:429,252:684:99:1696,0,5533 chrII 6155 . C T 1303.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.469;DP=630;Dels=0.00;FS=2.178;HaplotypeScore=58.4782;MLEAC=1;MLEAF=0.500;MQ=21.81;MQ0=32;MQRankSum=-5.064;QD=2.07;ReadPosRankSum=-9.745;SB=-9.080e+02 GT:AD:DP:GQ:PL 0/1:414,215:630:99:1333,0,5232 chrII 6157 . T C 3993.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406;DP=623;Dels=0.00;FS=17.991;HaplotypeScore=64.3499;MLEAC=1;MLEAF=0.500;MQ=21.78;MQ0=32;MQRankSum=2.535;QD=6.41;ReadPosRankSum=14.901;SB=-2.176e+03 GT:AD:DP:GQ:PL 0/1:279,343:623:99:3993,0,2495 chrII 6159 . T C 2428.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418;DP=617;Dels=0.00;FS=14.637;HaplotypeScore=63.3834;MLEAC=1;MLEAF=0.500;MQ=21.67;MQ0=31;MQRankSum=-2.382;QD=3.94;ReadPosRankSum=-13.179;SB=-1.393e+03 GT:AD:DP:GQ:PL 0/1:360,255:617:99:2458,0,3989 chrII 6202 . C G 4883.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.600;DP=372;Dels=0.00;FS=9.713;HaplotypeScore=23.8758;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=10;MQRankSum=-2.920;QD=13.13;ReadPosRankSum=0.405;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:16,346:372:99:4883,318,0 chrII 6208 . T C 4500.01 filter AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=4.3776;MLEAC=2;MLEAF=1.00;MQ=22.57;MQ0=8;QD=15.00;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,296:300:99:4500,530,0 chrII 6225 . A T 151.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;DP=174;Dels=0.00;FS=113.294;HaplotypeScore=26.7027;MLEAC=1;MLEAF=0.500;MQ=22.92;MQ0=0;MQRankSum=0.010;QD=0.87;ReadPosRankSum=-4.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,31:174:99:181,0,1296 chrII 6227 . G T 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=140;Dels=0.00;FS=38.043;HaplotypeScore=26.7027;MLEAC=1;MLEAF=0.500;MQ=23.05;MQ0=0;MQRankSum=2.717;QD=0.37;ReadPosRankSum=-1.097;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,12:140:82:82,0,1286 chrII 6228 . C A,G 1635.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.05;MQ0=0;QD=11.68;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/2:0,21,119:140:99:1695,1314,1266,382,0,202 chrII 6230 . A G 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.530;DP=143;Dels=0.00;FS=42.215;HaplotypeScore=26.7027;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=0;MQRankSum=2.355;QD=0.08;ReadPosRankSum=-0.579;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,12:143:41:41,0,1472 chrII 6283 . C T 526.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;DP=157;Dels=0.00;FS=2.974;HaplotypeScore=51.7642;MLEAC=1;MLEAF=0.500;MQ=23.73;MQ0=0;MQRankSum=2.470;QD=3.35;ReadPosRankSum=4.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,69:157:99:556,0,681 chrII 6288 . T C 742.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=256.0906;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=0;MQRankSum=6.711;QD=4.36;ReadPosRankSum=4.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,100:170:99:772,0,290 chrII 6302 . A G 473.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DP=180;Dels=0.04;FS=0.000;HaplotypeScore=431.7706;MLEAC=1;MLEAF=0.500;MQ=23.18;MQ0=2;MQRankSum=-1.204;QD=2.63;ReadPosRankSum=3.916;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,83:172:99:503,0,546 chrII 6311 . T C 176.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.358;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=249.9400;MLEAC=1;MLEAF=0.500;MQ=22.88;MQ0=5;MQRankSum=-6.457;QD=0.80;ReadPosRankSum=3.230;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,53:221:99:206,0,1153 chrII 6316 . A G 172.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=147.3082;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=9;MQRankSum=-5.705;QD=0.68;ReadPosRankSum=3.427;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:184,56:252:99:202,0,1194 chrII 6317 . A G 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=145.3925;MLEAC=1;MLEAF=0.500;MQ=21.81;MQ0=10;MQRankSum=7.400;QD=0.15;ReadPosRankSum=4.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,36:258:69:69,0,1345 chrII 6335 . C T 1963 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.788;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=84.5049;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=15;MQRankSum=-1.632;QD=6.48;ReadPosRankSum=2.455;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:11,292:303:99:1996,163,0 chrII 6344 . T C 733.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=124.2627;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=15;MQRankSum=0.156;QD=2.24;ReadPosRankSum=2.006;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,162:327:99:763,0,704 chrII 6347 . G T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.632;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=182.8260;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=15;MQRankSum=0.736;QD=0.04;ReadPosRankSum=-0.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:280,48:328:44:44,0,1463 chrII 6348 . C A 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.825;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=181.8393;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=15;MQRankSum=5.630;QD=0.39;ReadPosRankSum=-1.476;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:247,77:324:99:156,0,1298 chrII 6379 . A T 2024 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=20.03;MQ0=15;MQRankSum=0.482;QD=7.73;ReadPosRankSum=2.430;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,260:262:99:2057,246,0 chrII 6395 . C A 1038.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.728;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=118.7002;MLEAC=1;MLEAF=0.500;MQ=19.72;MQ0=12;MQRankSum=2.345;QD=4.53;ReadPosRankSum=0.606;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,165:228:99:1068,0,332 chrII 6396 . T G 841.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.034;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=118.7002;MLEAC=1;MLEAF=0.500;MQ=19.72;MQ0=12;MQRankSum=3.481;QD=3.67;ReadPosRankSum=2.035;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,133:229:99:871,0,538 chrII 6401 . C T 548.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.142;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=114.2357;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=12;MQRankSum=0.217;QD=2.56;ReadPosRankSum=-1.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,92:214:99:578,0,422 chrII 6440 . G C 637 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=1;QD=13.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:78:670,78,0 chrII 6605 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.69;MQ0=0;MQRankSum=2.219;QD=1.34;ReadPosRankSum=2.219;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:43,6,0 chrII 6607 . C G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.159;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.69;MQ0=0;MQRankSum=2.219;QD=1.34;ReadPosRankSum=2.219;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:43,6,0 chrII 6609 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.361;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.69;MQ0=0;MQRankSum=2.219;QD=1.34;ReadPosRankSum=2.219;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:43,6,0 chrII 6618 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.729;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.69;MQ0=0;MQRankSum=2.219;QD=1.34;ReadPosRankSum=2.219;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:43,6,0 chrII 6624 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=11.6808;MLEAC=2;MLEAF=1.00;MQ=20.08;MQ0=0;MQRankSum=3.235;QD=0.29;ReadPosRankSum=-2.635;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,38:42:6:43,6,0 chrII 6631 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.496;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=12.5129;MLEAC=2;MLEAF=1.00;MQ=20.26;MQ0=0;MQRankSum=1.065;QD=0.26;ReadPosRankSum=-1.323;SB=1.24 GT:AD:DP:GQ:PL 1/1:27,20:47:6:43,6,0 chrII 6661 . A G 220 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.089;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7386;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=3;MQRankSum=2.680;QD=2.93;ReadPosRankSum=-1.174;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:5,70:75:33:253,33,0 chrII 6663 . C A 221.17 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.063;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=3;MQRankSum=2.658;QD=2.95;ReadPosRankSum=-0.487;SB=-1.765e-01 GT:AD:DP:GQ:PL 1/1:5,70:75:17:254,17,0 chrII 6680 . A G 790 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.95;MQ0=4;QD=6.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:823,102,0 chrII 6698 . T G 305.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.181;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=23.5561;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=4;MQRankSum=2.706;QD=2.21;ReadPosRankSum=-1.359;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,55:138:99:335,0,395 chrII 6699 . A T 976 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=23.5561;MLEAC=2;MLEAF=1.00;MQ=23.94;MQ0=4;QD=7.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1009,123,0 chrII 6704 . T A 997 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=87.4360;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=4;QD=7.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1030,126,0 chrII 6705 . C T 458.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.520;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=87.4360;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=4;MQRankSum=3.191;QD=3.44;ReadPosRankSum=1.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,74:133:99:488,0,316 chrII 6706 . A G 449.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=87.4360;MLEAC=1;MLEAF=0.500;MQ=24.08;MQ0=5;MQRankSum=3.115;QD=3.35;ReadPosRankSum=1.974;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,74:134:99:479,0,325 chrII 6712 . C T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=87.0358;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=9;MQRankSum=1.253;QD=0.09;ReadPosRankSum=-0.329;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,22:140:42:42,0,762 chrII 6713 . A T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.063;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=106.8423;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=9;MQRankSum=1.219;QD=0.09;ReadPosRankSum=0.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,21:141:42:42,0,766 chrII 6714 . T C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=127.5290;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=9;MQRankSum=1.078;QD=0.12;ReadPosRankSum=-0.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,22:141:47:47,0,753 chrII 6718 . T G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=9;MQRankSum=0.366;QD=0.10;ReadPosRankSum=-0.848;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,23:145:45:45,0,777 chrII 6743 . C T 374.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=6;MQRankSum=-1.559;QD=2.97;ReadPosRankSum=-2.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,55:126:99:404,0,417 chrII 6754 . A C,T 775.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.97;MQ0=5;QD=7.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,41,69:110:99:835,484,436,351,0,285 chrII 6762 . C T 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=5;MQRankSum=-1.678;QD=2.48;ReadPosRankSum=-0.577;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,28:82:99:233,0,192 chrII 6766 . A C 366 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=5;QD=6.00;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:48:399,48,0 chrII 6767 . A T 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;DP=66;Dels=0.00;FS=5.044;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=5;MQRankSum=0.156;QD=1.30;ReadPosRankSum=2.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,16:66:99:116,0,268 chrII 6769 . C T 489 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.34;MQ0=5;QD=8.15;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:63:522,63,0 chrII 6774 . C T 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;DP=64;Dels=0.00;FS=19.338;HaplotypeScore=1.9765;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=7;MQRankSum=0.577;QD=1.14;ReadPosRankSum=0.701;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,18:64:99:103,0,439 chrII 6779 . G C 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;DP=54;Dels=0.00;FS=24.154;HaplotypeScore=1.9765;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=11;MQRankSum=1.468;QD=0.72;ReadPosRankSum=-3.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,13:54:69:69,0,390 chrII 6796 . C G 423 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=17.79;MQ0=19;QD=10.32;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:14,27:41:57:456,57,0 chrII 6814 . G A 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;DP=77;Dels=0.00;FS=5.926;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=18.31;MQ0=19;MQRankSum=1.701;QD=2.16;ReadPosRankSum=2.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,23:77:99:196,0,617 chrII 6819 . C T 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;DP=102;Dels=0.00;FS=3.064;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=18.05;MQ0=23;MQRankSum=-1.584;QD=1.81;ReadPosRankSum=-1.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,46:102:99:215,0,700 chrII 6826 . C T 743.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;DP=144;Dels=0.00;FS=20.360;HaplotypeScore=17.3665;MLEAC=1;MLEAF=0.500;MQ=18.55;MQ0=27;MQRankSum=3.632;QD=5.16;ReadPosRankSum=3.211;SB=-2.780e+02 GT:AD:DP:GQ:PL 0/1:92,52:144:99:773,0,301 chrII 6837 . G C 668.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;DP=173;Dels=0.00;FS=52.364;HaplotypeScore=20.6244;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=28;MQRankSum=-0.333;QD=3.86;ReadPosRankSum=6.575;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:121,51:173:99:698,0,969 chrII 6841 . T A 653.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;DP=184;Dels=0.00;FS=71.506;HaplotypeScore=34.9763;MLEAC=1;MLEAF=0.500;MQ=20.90;MQ0=28;MQRankSum=-3.016;QD=3.55;ReadPosRankSum=6.988;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:105,79:184:99:683,0,1177 chrII 6842 . C T 656.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;DP=188;Dels=0.02;FS=52.068;HaplotypeScore=29.7827;MLEAC=1;MLEAF=0.500;MQ=21.18;MQ0=28;MQRankSum=-0.375;QD=3.49;ReadPosRankSum=6.450;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:130,55:185:99:686,0,1179 chrII 6845 . C T 682.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DP=198;Dels=0.02;FS=54.774;HaplotypeScore=24.7079;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=30;MQRankSum=-0.295;QD=3.44;ReadPosRankSum=5.070;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:132,63:195:99:712,0,1232 chrII 6913 . T C 918.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.466;DP=282;Dels=0.00;FS=42.252;HaplotypeScore=71.0506;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=12;MQRankSum=0.717;QD=3.26;ReadPosRankSum=4.159;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:214,67:282:99:948,0,3229 chrII 6917 . T C 963.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;DP=260;Dels=0.00;FS=49.226;HaplotypeScore=56.3876;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=11;MQRankSum=-0.310;QD=3.70;ReadPosRankSum=2.144;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:193,67:260:99:993,0,3083 chrII 6918 . A C 963.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;DP=255;Dels=0.00;FS=56.080;HaplotypeScore=56.3876;MLEAC=1;MLEAF=0.500;MQ=26.61;MQ0=11;MQRankSum=-0.032;QD=3.78;ReadPosRankSum=1.727;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:180,67:255:99:993,0,3077 chrII 6920 . A T 1172.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;DP=244;Dels=0.00;FS=36.327;HaplotypeScore=42.9572;MLEAC=1;MLEAF=0.500;MQ=26.64;MQ0=9;MQRankSum=-1.736;QD=4.80;ReadPosRankSum=1.689;SB=-3.230e+02 GT:AD:DP:GQ:PL 0/1:167,77:244:99:1202,0,2827 chrII 6921 . G C 1187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;DP=238;Dels=0.00;FS=41.238;HaplotypeScore=34.1087;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=7;MQRankSum=-0.565;QD=4.99;ReadPosRankSum=1.479;SB=-3.340e+02 GT:AD:DP:GQ:PL 0/1:157,81:238:99:1217,0,2704 chrII 6958 . A G 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=67;Dels=0.00;FS=2.354;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=0;MQRankSum=1.112;QD=13.19;ReadPosRankSum=4.554;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:8,59:67:99:917,111,0 chrII 6965 . T C 183.01 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;QD=6.78;SB=-8.676e+01 GT:AD:DP:GQ:PL 1/1:0,21:27:27:216,27,0 chrII 6971 . G T 108.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.26;MQ0=0;QD=13.52;SB=-8.163e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:141,18,0 chrII 6980 . C T 54.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.49;MQ0=0;QD=6.81;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:87,12,0 chrII 6987 . A G 75.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=0;QD=6.27;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:108,15,0 chrII 6999 . A T 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.5646;MLEAC=1;MLEAF=0.500;MQ=21.98;MQ0=1;MQRankSum=-0.755;QD=2.67;ReadPosRankSum=1.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,17:27:99:102,0,107 chrII 7003 . G T 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.5646;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=1;MQRankSum=0.506;QD=3.23;ReadPosRankSum=0.638;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,20:31:99:130,0,99 chrII 7006 . C G 253 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=1;QD=6.66;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:33:286,33,0 chrII 7035 . G T 882.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.434;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7928;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=11;MQRankSum=3.625;QD=6.84;ReadPosRankSum=-3.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,81:129:99:912,0,418 chrII 7044 . C T 919.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8061;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=11;MQRankSum=2.121;QD=6.91;ReadPosRankSum=-5.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,89:133:99:949,0,359 chrII 7075 . A G 1138 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.29;MQ0=13;QD=13.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1171,138,0 chrII 7116 . C A 75.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.920;DP=69;Dels=0.00;FS=10.928;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;MQRankSum=0.077;QD=1.09;ReadPosRankSum=4.007;SB=-8.327e+01 GT:AD:DP:GQ:PL 1/1:6,63:69:15:108,15,0 chrII 7129 . A C 645 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.77;MQ0=2;QD=10.40;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:78:678,78,0 chrII 7133 . T G 564 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.63;MQ0=2;QD=9.25;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:66:597,66,0 chrII 7146 . T C 313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.723;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.41;MQ0=2;MQRankSum=0.864;QD=5.69;ReadPosRankSum=0.070;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:39:346,39,0 chrII 7150 . G C 210 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.20;MQ0=2;QD=4.29;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:30:243,30,0 chrII 7167 . A G 79.51 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.81;MQ0=0;QD=2.48;SB=-2.639e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:112,12,0 chrII 7172 . C T 75.51 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.81;MQ0=0;QD=2.36;SB=-2.739e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:108,12,0 chrII 7183 . T C 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.26;MQ0=0;MQRankSum=1.281;QD=1.96;ReadPosRankSum=1.583;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:9:77,9,0 chrII 7186 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=18.17;MQ0=0;QD=1.29;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,20:20:6:57,6,0 chrII 7368 . C T 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;DP=52;Dels=0.00;FS=2.706;HaplotypeScore=8.6500;MLEAC=1;MLEAF=0.500;MQ=17.34;MQ0=6;MQRankSum=-0.219;QD=1.96;ReadPosRankSum=0.404;SB=-6.536e-03 GT:AD:DP:GQ:PL 0/1:21,31:52:51:132,0,51 chrII 7389 . C T 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.290;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=19.83;MQ0=5;MQRankSum=2.929;QD=3.58;ReadPosRankSum=-2.130;SB=-6.719e-03 GT:AD:DP:GQ:PL 0/1:33,32:65:40:263,0,40 chrII 7461 . C T 161.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.111;DP=42;Dels=0.00;FS=3.531;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=19.16;MQ0=10;MQRankSum=0.805;QD=3.83;ReadPosRankSum=-0.849;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:9,32:42:21:194,21,0 chrII 7718 . C A 285 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=129;Dels=0.00;FS=49.092;HaplotypeScore=18.2064;MLEAC=2;MLEAF=1.00;MQ=12.73;MQ0=63;MQRankSum=0.198;QD=2.21;ReadPosRankSum=-3.586;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:30,98:129:36:318,36,0 chrII 7857 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;DP=81;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.06;MQ0=75;MQRankSum=1.537;QD=0.21;ReadPosRankSum=-1.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:38,43:81:6:48,6,0 chrII 7933 . A T 1766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;DP=270;Dels=0.00;FS=5.887;HaplotypeScore=26.8039;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=46;MQRankSum=-2.342;QD=6.54;ReadPosRankSum=-6.032;SB=-7.290e+02 GT:AD:DP:GQ:PL 0/1:134,136:270:99:1796,0,934 chrII 8023 . G T 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;DP=192;Dels=0.00;FS=14.643;HaplotypeScore=24.2956;MLEAC=1;MLEAF=0.500;MQ=12.51;MQ0=120;MQRankSum=3.408;QD=0.53;ReadPosRankSum=1.389;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:140,42:192:99:131,0,410 chrII 8139 . T C 639.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;DP=152;Dels=0.00;FS=293.290;HaplotypeScore=24.2997;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=23;MQRankSum=-4.079;QD=4.20;ReadPosRankSum=6.827;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:58,94:152:35:669,0,35 chrII 8146 . A G 555.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;DP=182;Dels=0.00;FS=265.110;HaplotypeScore=24.2997;MLEAC=1;MLEAF=0.500;MQ=21.28;MQ0=25;MQRankSum=-1.922;QD=3.05;ReadPosRankSum=4.692;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:106,76:182:99:585,0,456 chrII 8161 . C G 769.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.624;DP=235;Dels=0.00;FS=387.559;HaplotypeScore=2.9355;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=37;MQRankSum=9.161;QD=3.27;ReadPosRankSum=-5.500;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:131,104:235:99:799,0,786 chrII 8174 . T A 1958 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.694;DP=271;Dels=0.00;FS=9.638;HaplotypeScore=12.5040;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=33;MQRankSum=0.786;QD=7.23;ReadPosRankSum=3.059;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:7,264:271:99:1991,213,0 chrII 8180 . G A 955.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DP=276;Dels=0.00;FS=455.490;HaplotypeScore=37.1096;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=33;MQRankSum=10.108;QD=3.46;ReadPosRankSum=-2.494;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:117,159:276:99:985,0,702 chrII 8186 . C T 942.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;DP=277;Dels=0.00;FS=438.780;HaplotypeScore=26.3859;MLEAC=1;MLEAF=0.500;MQ=24.10;MQ0=31;MQRankSum=9.107;QD=3.40;ReadPosRankSum=-0.371;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:110,164:277:99:972,0,699 chrII 8187 . T C 1104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;DP=282;Dels=0.00;FS=417.976;HaplotypeScore=27.7603;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=31;MQRankSum=8.234;QD=3.91;ReadPosRankSum=0.518;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:108,174:282:99:1134,0,546 chrII 8216 . C G 1320.12 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=282;Dels=0.00;FS=363.062;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=30;MQRankSum=7.734;QD=4.68;ReadPosRankSum=6.102;SB=-2.135e+00 GT:AD:DP:GQ:PL 1/1:71,211:282:5:1351,5,0 chrII 8221 . G A 1784 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=25;MQRankSum=-0.674;QD=7.11;ReadPosRankSum=1.594;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,250:251:99:1817,210,0 chrII 8222 . T C 1724 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=25;QD=6.87;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,251:251:99:1757,210,0 chrII 8238 . T C 1059 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.5515;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=12;MQRankSum=-0.099;QD=5.38;ReadPosRankSum=3.413;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:4,193:197:99:1092,132,0 chrII 8250 . A G 685 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=0;QD=4.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,149:149:90:718,90,0 chrII 8253 . C T 719 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;QD=4.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,157:157:93:752,93,0 chrII 8280 . G A 851 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=6.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,130:130:96:884,96,0 chrII 8281 . G C 790 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=6.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,130:130:96:823,96,0 chrII 8283 . A G 846 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=6.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,130:130:96:879,96,0 chrII 8288 . T A 876 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.721;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;MQRankSum=-0.574;QD=5.31;ReadPosRankSum=3.797;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:5,159:165:99:909,102,0 chrII 8315 . G A 1247 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.205;DP=217;Dels=0.00;FS=64.734;HaplotypeScore=5.5539;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=3.643;QD=5.75;ReadPosRankSum=2.677;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:5,212:217:93:1280,93,0 chrII 8316 . A T 1316 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.448;DP=220;Dels=0.00;FS=72.638;HaplotypeScore=5.5539;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=4.042;QD=5.98;ReadPosRankSum=2.930;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:6,214:220:93:1349,93,0 chrII 8317 . A G 1220 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;DP=221;Dels=0.00;FS=125.056;HaplotypeScore=5.5539;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;MQRankSum=4.112;QD=5.52;ReadPosRankSum=3.864;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:10,211:221:48:1253,48,0 chrII 8328 . G C,T 1565.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.595;DP=315;Dels=0.00;FS=59.407;HaplotypeScore=25.6881;MLEAC=1,1;MLEAF=0.500,0.500;MQ=30.52;MQ0=0;MQRankSum=4.089;QD=4.97;ReadPosRankSum=-0.563;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/2:6,103,206:315:99:1625,1075,1075,487,0,421 chrII 8331 . C T 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.419;DP=332;Dels=0.00;FS=46.900;HaplotypeScore=37.0079;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;MQRankSum=3.994;QD=7.33;ReadPosRankSum=-1.238;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:6,326:332:99:2468,210,0 chrII 8455 . A G 9426.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.980;DP=435;Dels=0.00;FS=21.799;HaplotypeScore=49.1338;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=1.726;QD=21.67;ReadPosRankSum=4.079;SB=-4.218e+03 GT:AD:DP:GQ:PL 1/1:6,427:435:99:9426,1112,0 chrII 8607 . T C 6865.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.789;DP=533;Dels=0.00;FS=1.481;HaplotypeScore=41.4976;MLEAC=1;MLEAF=0.500;MQ=58.19;MQ0=0;MQRankSum=1.517;QD=12.88;ReadPosRankSum=0.137;SB=-3.568e+03 GT:AD:DP:GQ:PL 0/1:174,353:533:99:6865,0,2765 chrII 9091 . A T 63.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;MQRankSum=-0.742;QD=9.07;ReadPosRankSum=0.742;SB=-4.455e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:12:96,12,0 chrII 9266 . C T 41.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=27;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.48;MQ0=22;MQRankSum=0.731;QD=1.52;ReadPosRankSum=0.731;SB=-2.415e+01 GT:AD:DP:GQ:PL 0/1:23,4:27:13:71,0,13 chrII 9332 . G C 93.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.237;DP=22;Dels=0.00;FS=13.676;HaplotypeScore=1.9880;MLEAC=2;MLEAF=1.00;MQ=17.39;MQ0=4;MQRankSum=0.829;QD=4.24;ReadPosRankSum=2.014;SB=-9.976e+01 GT:AD:DP:GQ:PL 1/1:7,15:22:15:126,15,0 chrII 9355 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.07;MQ0=1;QD=2.87;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:78,9,0 chrII 9356 . C T 44.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.07;MQ0=1;QD=2.81;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:77,9,0 chrII 9560 . C T 1316 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=20.89;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1349,147,0 chrII 9565 . A G 1230 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=20.50;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1263,141,0 chrII 9567 . G A 1204 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=20.41;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1237,138,0 chrII 9679 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=78.2338;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=19.37;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1718,195,0 chrII 9688 . C G 1647 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=19.15;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1680,186,0 chrII 9859 . T G 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=105;Dels=0.00;FS=3.020;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.762;QD=22.81;ReadPosRankSum=2.403;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2428,279,0 chrII 9932 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=106;Dels=0.00;FS=2.865;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.430;QD=23.21;ReadPosRankSum=2.334;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2493,282,0 chrII 10027 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=21.03;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2430,264,0 chrII 10038 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.24;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2348,258,0 chrII 10136 . G T 2752 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.56;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2785,303,0 chrII 10210 . G A 1923 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.68;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1956,213,0 chrII 10325 . T C 2794 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.28;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2827,315,0 chrII 10401 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.65;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2635,288,0 chrII 10572 . T C 2720 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=23.05;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2753,312,0 chrII 10621 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.64;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2587,279,0 chrII 10627 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.64;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2292,249,0 chrII 10674 . A C 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=8.7101;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.630;QD=18.65;ReadPosRankSum=1.701;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2084,231,0 chrII 10708 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=88.9188;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.14;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1947,210,0 chrII 10783 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=21.93;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2555,279,0 chrII 10795 . T A 2442 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=22.61;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2475,276,0 chrII 10801 . G T 2427 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.79;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2460,267,0 chrII 10943 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.39;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4030,459,0 chrII 11039 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=5.015;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.207;QD=23.82;ReadPosRankSum=1.711;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3930,459,0 chrII 11360 . T A 2705 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.92;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2738,300,0 chrII 11361 . G C 2666 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=18.51;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2699,300,0 chrII 11435 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.71;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3224,345,0 chrII 11470 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=3.011;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.712;QD=22.50;ReadPosRankSum=2.368;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3442,384,0 chrII 11545 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.38;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3559,405,0 chrII 11749 . T C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=3.138;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.682;QD=22.79;ReadPosRankSum=1.707;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3201,354,0 chrII 12208 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.46;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3683,402,0 chrII 12578 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.0818;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.83;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3274,369,0 chrII 12914 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=133;Dels=0.00;FS=8.209;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.414;QD=23.36;ReadPosRankSum=2.413;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3140,357,0 chrII 13006 . A C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.56;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3632,420,0 chrII 13043 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.59;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3998,441,0 chrII 13061 . G T 3928.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.07;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3928,426,0 chrII 13145 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.760;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.824;QD=22.04;ReadPosRankSum=1.708;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3251,369,0 chrII 13169 . A C 2859 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.66;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2892,333,0 chrII 13609 . G T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4097,453,0 chrII 13708 . A G 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.415;QD=23.73;ReadPosRankSum=1.617;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2881,321,0 chrII 14038 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.83;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1868,204,0 chrII 14472 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.48;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3828,420,0 chrII 15222 . T A 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.249;QD=22.78;ReadPosRankSum=2.297;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2971,324,0 chrII 15234 . T C 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=130;Dels=0.00;FS=2.517;HaplotypeScore=4.8917;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=2.140;QD=21.18;ReadPosRankSum=2.233;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2787,315,0 chrII 15510 . G T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.19;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3271,360,0 chrII 15518 . A G 3423.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.02;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3423,381,0 chrII 15830 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.115;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.299;QD=21.73;ReadPosRankSum=1.670;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3694,414,0 chrII 15880 . C T 4201.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.71;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4201,453,0 chrII 16009 . T G 4013.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4013,468,0 chrII 16530 . C T 4444.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.42;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4444,483,0 chrII 16749 . G A 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=184;Dels=0.00;FS=3.704;HaplotypeScore=14.1826;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.543;QD=21.38;ReadPosRankSum=0.880;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3934,423,0 chrII 17715 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.033;QD=23.12;ReadPosRankSum=1.666;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2437,276,0 chrII 18082 . A T 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=158;Dels=0.00;FS=2.861;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.216;QD=19.73;ReadPosRankSum=2.372;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3151,357,0 chrII 18175 . T C 5272.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.8400;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.86;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5272,603,0 chrII 18513 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.9698;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.108;QD=21.22;ReadPosRankSum=1.708;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3110,342,0 chrII 18966 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=190;Dels=0.00;FS=3.392;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.438;QD=21.69;ReadPosRankSum=1.677;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4122,468,0 chrII 19023 . T C 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7029;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.491;QD=22.52;ReadPosRankSum=1.652;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3918,456,0 chrII 19967 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.05;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3434,387,0 chrII 20206 . T C 5556.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.8564;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.68;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5556,621,0 chrII 20220 . G A 5134.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.23;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5134,564,0 chrII 20445 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.571;QD=21.84;ReadPosRankSum=1.714;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4149,462,0 chrII 20568 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.13;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3718,432,0 chrII 21007 . A G 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=122;Dels=0.00;FS=2.939;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.210;QD=20.61;ReadPosRankSum=2.409;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2547,291,0 chrII 21051 . A G 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.598;DP=98;Dels=0.00;FS=8.152;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.302;QD=20.84;ReadPosRankSum=3.663;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:5,92:98:99:2075,237,0 chrII 21461 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.757;HaplotypeScore=8.9656;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.367;QD=22.30;ReadPosRankSum=1.709;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,151:155:99:3456,381,0 chrII 21480 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.67;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3287,357,0 chrII 21560 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.77;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2970,333,0 chrII 21610 . A T 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=114;Dels=0.00;FS=2.825;HaplotypeScore=7.3260;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.917;QD=22.54;ReadPosRankSum=2.385;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2603,285,0 chrII 21662 . T C 2148 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.92;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2181,246,0 chrII 21769 . T G 2014 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.89;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2047,237,0 chrII 21977 . C A 1864 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.43;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1897,216,0 chrII 21979 . C A 1819 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.40;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1852,207,0 chrII 22025 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.59;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2214,240,0 chrII 22296 . C G 2549 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2582,291,0 chrII 22375 . G T 3052 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3085,336,0 chrII 22415 . T C 2813 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2846,330,0 chrII 23230 . A G 4939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=226;Dels=0.00;FS=2.820;HaplotypeScore=10.8752;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=0.396;QD=21.85;ReadPosRankSum=2.330;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4939,561,0 chrII 23683 . A G 2234 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=18.46;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2267,252,0 chrII 24209 . T C 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=2.926;HaplotypeScore=7.6567;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.548;QD=24.04;ReadPosRankSum=2.409;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2918,330,0 chrII 24286 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.73;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3523,381,0 chrII 24355 . T C 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.628;DP=180;Dels=0.00;FS=8.013;HaplotypeScore=16.9837;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.720;QD=20.34;ReadPosRankSum=3.733;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:5,174:180:99:3662,411,0 chrII 24379 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=165;Dels=0.00;FS=2.567;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.245;QD=20.42;ReadPosRankSum=2.957;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3369,378,0 chrII 24823 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.34;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1597,180,0 chrII 24859 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=23.20;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1170,126,0 chrII 24888 . G A 367 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=7.9436;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.32;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:45:400,45,0 chrII 25246 . T C 5708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=241;Dels=0.00;FS=2.574;HaplotypeScore=18.3279;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.381;QD=23.68;ReadPosRankSum=2.962;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:5708,648,0 chrII 25341 . T C 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=271;Dels=0.00;FS=5.732;HaplotypeScore=7.5298;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.446;QD=18.16;ReadPosRankSum=2.944;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:3,267:271:99:4921,570,0 chrII 25345 . A G 4926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=279;Dels=0.00;FS=7.287;HaplotypeScore=8.2750;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.306;QD=17.66;ReadPosRankSum=2.352;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:2,275:279:99:4926,570,0 chrII 25978 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.90;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3824,435,0 chrII 26010 . C T 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.889;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.805;QD=19.09;ReadPosRankSum=1.098;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2763,315,0 chrII 26029 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.56;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2772,312,0 chrII 26161 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4047,450,0 chrII 26500 . A C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3819,438,0 chrII 26596 . C G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.22;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3831,426,0 chrII 26815 . A G 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=141;Dels=0.00;FS=5.539;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.101;QD=20.96;ReadPosRankSum=2.835;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2988,339,0 chrII 27032 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.02;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2796,303,0 chrII 27154 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.12;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2599,282,0 chrII 27232 . A G 2852 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.28;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2885,333,0 chrII 27397 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4918;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.022;QD=22.66;ReadPosRankSum=2.330;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3716,420,0 chrII 27441 . T C 2394 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=17.87;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2427,285,0 chrII 27663 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.8262;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.17;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2976,327,0 chrII 27781 . T C 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.3998;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.282;QD=23.66;ReadPosRankSum=1.682;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4945,561,0 chrII 27832 . C T 4383.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.9547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4383,483,0 chrII 28538 . A G 2379 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5521;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.24;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2412,273,0 chrII 28614 . T C 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.648;QD=22.07;ReadPosRankSum=1.702;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2571,294,0 chrII 28912 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.052;QD=20.86;ReadPosRankSum=1.700;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2286,258,0 chrII 28960 . C G 2536 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.64;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2569,294,0 chrII 29027 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.49;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2574,300,0 chrII 29038 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=23.78;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2696,294,0 chrII 29064 . T C 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=123;Dels=0.00;FS=2.787;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.796;QD=21.59;ReadPosRankSum=2.389;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2688,309,0 chrII 29096 . T C 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.383;QD=20.58;ReadPosRankSum=1.706;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2749,318,0 chrII 29111 . T C 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.774;QD=19.79;ReadPosRankSum=2.413;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2725,315,0 chrII 29154 . C G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.02;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3249,372,0 chrII 29190 . A G 3085 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.19;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3118,357,0 chrII 29361 . T C 4622.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.3735;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.11;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4622,525,0 chrII 29377 . A C 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=207;Dels=0.00;FS=3.161;HaplotypeScore=17.2420;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.428;QD=21.36;ReadPosRankSum=1.698;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4421,486,0 chrII 31198 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.30;MQ0=13;QD=1.04;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,19:19:6:51,6,0 chrII 31205 . G T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.61;MQ0=10;QD=1.40;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,16:17:6:55,6,0 chrII 31236 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=4;QD=1.19;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:49,6,0 chrII 31242 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=3;QD=1.41;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:51,6,0 chrII 31253 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.16;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:55,6,0 chrII 31260 . A C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=1;QD=1.65;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:51,6,0 chrII 31486 . C T 370 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=3;QD=6.49;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:45:403,45,0 chrII 31492 . C T 292 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=18.08;MQ0=3;QD=6.35;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,43:46:36:325,36,0 chrII 31510 . G A 182.03 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.90;MQ0=3;QD=7.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:24:215,24,0 chrII 31525 . T C 150.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=3;QD=15.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:21:183,21,0 chrII 31643 . T G 99.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.69;MQ0=3;QD=2.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:15:132,15,0 chrII 31645 . G A 106.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.69;MQ0=3;QD=2.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:15:139,15,0 chrII 31648 . C A 124.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.09;MQ0=4;QD=2.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:18:157,18,0 chrII 32008 . C A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=6;QD=3.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:6:56,6,0 chrII 32023 . C A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.36;MQ0=4;QD=4.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:6:56,6,0 chrII 32035 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.36;MQ0=4;QD=3.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrII 34483 . C T 105.26 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.86;MQ0=7;QD=8.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:15:138,15,0 chrII 34524 . A T 144.06 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=7;QD=10.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:21:177,21,0 chrII 34571 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrII 34576 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrII 34751 . T C 90.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=1;QD=12.89;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:123,15,0 chrII 34753 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=1;QD=6.42;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:9:77,9,0 chrII 34778 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.25;MQ0=9;QD=1.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,2:11:6:43,6,0 chrII 35718 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrII 35722 . T C 69.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.01;MQ0=0;MQRankSum=-0.720;QD=11.59;ReadPosRankSum=0.720;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,4:6:12:102,12,0 chrII 35736 . T C 214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=15;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;MQRankSum=0.116;QD=14.27;ReadPosRankSum=1.042;SB=-5.102e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:27:247,27,0 chrII 35737 . A C 217.01 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;QD=13.56;SB=-5.302e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:27:250,27,0 chrII 35840 . G A 239 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;QD=17.07;SB=-8.298e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:272,30,0 chrII 36240 . T C 655 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0178;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=5.85;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:78:688,78,0 chrII 36302 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=21.44;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2241,252,0 chrII 36362 . A G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.168;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=0.588;QD=22.35;ReadPosRankSum=1.701;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2536,282,0 chrII 36383 . G T 2959 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=21.76;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2992,324,0 chrII 36389 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=3.027;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=-1.173;QD=19.35;ReadPosRankSum=2.274;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3013,342,0 chrII 36690 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.84;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2086,231,0 chrII 36721 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.47;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2073,231,0 chrII 36837 . C G 1672 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.16;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1705,195,0 chrII 37454 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.43;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4844,528,0 chrII 37628 . C T 4882.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.7983;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.79;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4882,531,0 chrII 38800 . G A 77.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=12.92;SB=-2.826e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:110,12,0 chrII 38956 . T C 495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.273;QD=20.62;ReadPosRankSum=2.237;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:2,21:23:60:528,60,0 chrII 39234 . A T 2452 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.04;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2485,273,0 chrII 39405 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=25.57;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3298,354,0 chrII 39435 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.64;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2637,309,0 chrII 39607 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=132;Dels=0.00;FS=10.075;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.069;QD=22.96;ReadPosRankSum=2.947;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:3064,339,0 chrII 40029 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.5278;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.79;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3297,357,0 chrII 40245 . T C 2573 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.5909;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.20;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2606,300,0 chrII 40260 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.34;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2799,303,0 chrII 40571 . T G 534 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=13.69;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:66:567,66,0 chrII 40590 . C A 98.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=12.28;SB=-2.976e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:131,15,0 chrII 40771 . C T 1402 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=24.17;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1435,159,0 chrII 40829 . A G 2119 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.36;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2152,240,0 chrII 40882 . T C 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.078;QD=23.78;ReadPosRankSum=1.701;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2673,303,0 chrII 40992 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.89;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3734,408,0 chrII 41046 . T C 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.833;QD=23.25;ReadPosRankSum=1.695;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4301,486,0 chrII 41124 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4307,480,0 chrII 41298 . G A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.5102;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.23;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5089,552,0 chrII 41463 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.46;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3728,414,0 chrII 41484 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7876;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.76;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4006,444,0 chrII 41543 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.237;QD=23.45;ReadPosRankSum=1.711;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3963,441,0 chrII 41637 . C A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.81;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3399,375,0 chrII 41733 . G C 4534.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.90;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4534,510,0 chrII 41858 . C T 4468.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.10;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4468,492,0 chrII 41913 . A G 4413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.235;QD=22.87;ReadPosRankSum=1.678;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4413,507,0 chrII 42187 . C A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=16.8719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3300,360,0 chrII 42717 . C T 3308.01 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=21.21;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3308,360,0 chrII 42723 . T C 2999 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=155;Dels=0.00;FS=7.691;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=-0.525;QD=19.35;ReadPosRankSum=2.320;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,150:155:99:3032,342,0 chrII 42726 . A G 2925 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=150;Dels=0.00;FS=2.844;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;MQRankSum=-1.778;QD=19.50;ReadPosRankSum=2.351;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2958,327,0 chrII 42921 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.75;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2067,225,0 chrII 42929 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=20.18;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2031,222,0 chrII 43330 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=19.70;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2476,282,0 chrII 43348 . A G 2797 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.8376;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.03;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2830,333,0 chrII 43654 . T C 6442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=293;Dels=0.00;FS=5.962;HaplotypeScore=11.6752;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.199;QD=21.99;ReadPosRankSum=2.928;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:3,290:293:99:6442,744,0 chrII 43774 . C G 5377.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.98;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5377,609,0 chrII 44008 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.20;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2513,276,0 chrII 44032 . T C 2160 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.77;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2193,240,0 chrII 44047 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.42;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2368,258,0 chrII 44904 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.44;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3076,354,0 chrII 44974 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=4.058;HaplotypeScore=13.6863;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.485;QD=18.95;ReadPosRankSum=1.697;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:3753,426,0 chrII 45009 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.2157;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.12;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4034,438,0 chrII 45075 . C T 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.926;DP=129;Dels=0.00;FS=3.547;HaplotypeScore=16.6853;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=1.410;QD=16.98;ReadPosRankSum=-0.497;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2224,246,0 chrII 45269 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=19.4172;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.17;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3430,384,0 chrII 45304 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.14;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3504,396,0 chrII 45307 . G T 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=4.004;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.295;QD=19.15;ReadPosRankSum=0.433;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3390,381,0 chrII 45660 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=7.988;HaplotypeScore=9.3068;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.516;QD=24.36;ReadPosRankSum=1.686;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3702,414,0 chrII 45824 . T C 2796 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.02;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2829,321,0 chrII 46603 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.193;QD=25.39;ReadPosRankSum=1.706;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3428,381,0 chrII 46720 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=219;Dels=0.00;FS=2.948;HaplotypeScore=18.3231;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.501;QD=22.03;ReadPosRankSum=2.416;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4825,546,0 chrII 46916 . T C 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=202;Dels=0.00;FS=3.560;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.686;QD=21.56;ReadPosRankSum=1.663;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4355,501,0 chrII 47062 . A G 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=3.594;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.486;QD=22.97;ReadPosRankSum=1.637;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4227,471,0 chrII 47197 . C G 4755.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.3860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4755,531,0 chrII 47244 . A T 5144.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=19.4434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5144,567,0 chrII 47612 . T C 6441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=293;Dels=0.00;FS=12.868;HaplotypeScore=21.1279;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.075;QD=21.98;ReadPosRankSum=3.425;SB=-3.507e+03 GT:AD:DP:GQ:PL 1/1:4,288:293:99:6441,729,0 chrII 47900 . G A 5243.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.0420;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.70;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5243,582,0 chrII 47948 . A G 4789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.8513;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.370;QD=19.95;ReadPosRankSum=1.703;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:4789,534,0 chrII 47971 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.35;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4763,513,0 chrII 48762 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=148;Dels=0.00;FS=5.935;HaplotypeScore=13.4391;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.212;QD=22.51;ReadPosRankSum=2.939;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3331,372,0 chrII 49603 . A G 5090.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.5545;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.12;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5090,585,0 chrII 49789 . C T 5764.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:5764,663,0 chrII 49999 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4141,471,0 chrII 50569 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=151;Dels=0.00;FS=3.796;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.250;QD=23.59;ReadPosRankSum=1.686;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3562,405,0 chrII 50601 . C A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.57;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3363,366,0 chrII 50611 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.48;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3395,372,0 chrII 50820 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.82;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3011,327,0 chrII 50893 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=23.69;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2331,258,0 chrII 50947 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.07;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2702,300,0 chrII 50954 . G C 2630 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.48;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2663,297,0 chrII 51538 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=164;Dels=0.00;FS=4.314;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.428;QD=20.97;ReadPosRankSum=1.711;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3439,390,0 chrII 51746 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2848,309,0 chrII 51921 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2932,318,0 chrII 52035 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3501,381,0 chrII 52217 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.1065;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.02;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4059,441,0 chrII 52615 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2582,279,0 chrII 53512 . A C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.454;QD=20.97;ReadPosRankSum=1.677;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3943,444,0 chrII 53554 . G C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.98;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,161:167:99:3337,387,0 chrII 53802 . A C 3186 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=22.44;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3219,372,0 chrII 53853 . T A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=24.79;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3818,420,0 chrII 54034 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.67;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3640,396,0 chrII 54042 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=20.01;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3321,369,0 chrII 54055 . A G 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=2.631;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-1.013;QD=19.03;ReadPosRankSum=2.402;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2964,339,0 chrII 54057 . T C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=4.690;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=-0.512;QD=19.49;ReadPosRankSum=1.667;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3132,351,0 chrII 54133 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.37;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3300,366,0 chrII 54156 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=167;Dels=0.00;FS=2.946;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.555;QD=20.63;ReadPosRankSum=2.405;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3445,381,0 chrII 54607 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.1055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3605,405,0 chrII 54682 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.910;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.084;QD=23.09;ReadPosRankSum=1.665;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3602,405,0 chrII 54925 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.39;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2691,300,0 chrII 54988 . A G 2682 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2715,306,0 chrII 55182 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.26;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2993,330,0 chrII 55659 . A C 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.709;DP=174;Dels=0.00;FS=12.046;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.004;QD=23.42;ReadPosRankSum=3.764;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:5,166:174:99:4075,462,0 chrII 56131 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2798,300,0 chrII 56575 . A T 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=137;Dels=0.00;FS=2.822;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.547;QD=23.03;ReadPosRankSum=2.396;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3188,354,0 chrII 56654 . G C 3795.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.87;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3795,426,0 chrII 56942 . A T 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.385;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.498;QD=24.17;ReadPosRankSum=1.706;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3247,357,0 chrII 56974 . C A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.75;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3538,387,0 chrII 57115 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.78;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3281,357,0 chrII 57316 . T C 2596 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.97;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2629,306,0 chrII 57450 . C A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.80;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3596,393,0 chrII 57880 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.51;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2894,315,0 chrII 58174 . A T 1851 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.69;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1884,210,0 chrII 58450 . G A 4481.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.89;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4481,501,0 chrII 58496 . A G 4208.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.25;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4208,471,0 chrII 58609 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.159;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.954;QD=23.10;ReadPosRankSum=1.713;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4134,477,0 chrII 58647 . G A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.65;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3996,429,0 chrII 58787 . A T 4278.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.90;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4278,468,0 chrII 59164 . G C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.55;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3427,393,0 chrII 59191 . G C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.45;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3278,360,0 chrII 59199 . A G 2793 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.24;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2826,327,0 chrII 59500 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.14;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3452,384,0 chrII 59525 . T C 3088 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.57;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3121,360,0 chrII 59969 . G A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0842;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.01;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3402,375,0 chrII 60420 . A G 3121 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.29;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3154,366,0 chrII 60470 . A G 3135 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.47;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3168,357,0 chrII 60478 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.79;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2964,330,0 chrII 60545 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.59;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3541,384,0 chrII 60616 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.51;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3066,333,0 chrII 60786 . T C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-1.144;QD=23.16;ReadPosRankSum=1.699;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2488,279,0 chrII 60793 . C G 2437 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=23.21;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2470,282,0 chrII 60945 . A C 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=3.335;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.152;QD=18.87;ReadPosRankSum=1.677;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2411,273,0 chrII 61025 . T C 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=4.109;HaplotypeScore=60.5145;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=0.632;QD=20.61;ReadPosRankSum=1.610;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1826,210,0 chrII 61031 . T C 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.241;HaplotypeScore=54.7738;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;MQRankSum=0.697;QD=21.12;ReadPosRankSum=1.642;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1659,195,0 chrII 61067 . G A 1319 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=19.40;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1352,144,0 chrII 61070 . G T 1178 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=17.58;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1211,138,0 chrII 61071 . G A 1302 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=19.15;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1335,144,0 chrII 61089 . T A 1640 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=17.08;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1673,180,0 chrII 61105 . C T 1807 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=17.54;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1840,198,0 chrII 61179 . T C 1946 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=17.53;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1979,216,0 chrII 61197 . A T 1442 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.544;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;MQRankSum=1.534;QD=13.73;ReadPosRankSum=-1.567;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1475,159,0 chrII 61199 . A T 1340 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=9.374;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;MQRankSum=-1.629;QD=13.14;ReadPosRankSum=2.401;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1373,150,0 chrII 61202 . C T 1305 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=13.05;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1338,147,0 chrII 61208 . C T 1121 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=11.44;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1154,129,0 chrII 61287 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=25.35;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,158:161:99:4082,438,0 chrII 61376 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.1381;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.424;QD=23.46;ReadPosRankSum=2.348;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4575,516,0 chrII 61810 . C T 5055.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=19.5822;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5055,558,0 chrII 62000 . T C 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.426;QD=23.09;ReadPosRankSum=1.712;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3948,447,0 chrII 62445 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=143;Dels=0.00;FS=7.098;HaplotypeScore=8.2320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.926;QD=20.81;ReadPosRankSum=2.380;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3009,333,0 chrII 62830 . G T 1665 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=16.65;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1698,192,0 chrII 62852 . T A 1998 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.60;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2031,222,0 chrII 63048 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.58;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2148,237,0 chrII 63113 . T C 2295 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.66;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2328,261,0 chrII 63243 . G C 2659 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.3045;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.16;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2692,306,0 chrII 63284 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.54;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2512,270,0 chrII 63295 . G T 2166 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=22.56;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2199,246,0 chrII 63304 . T A 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.370;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.875;QD=21.63;ReadPosRankSum=1.658;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2045,231,0 chrII 63831 . T C 2811 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.82;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2844,321,0 chrII 63857 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.666;QD=21.86;ReadPosRankSum=1.652;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2875,321,0 chrII 63891 . A T 3008 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.96;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3041,342,0 chrII 64139 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.25;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4122,456,0 chrII 64291 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3400,363,0 chrII 64716 . C G 2483 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2516,282,0 chrII 64864 . A C 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;DP=102;Dels=0.00;FS=3.184;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.543;QD=20.46;ReadPosRankSum=0.543;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2120,240,0 chrII 65171 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=165;Dels=0.00;FS=3.017;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.094;QD=20.92;ReadPosRankSum=2.375;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3452,390,0 chrII 65309 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.11;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4476,510,0 chrII 65480 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1532;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=20.62;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3567,393,0 chrII 65858 . C A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.7432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3380,372,0 chrII 65975 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4004,447,0 chrII 66052 . T C 4439.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4439,489,0 chrII 66467 . G A 5968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.023;DP=265;Dels=0.00;FS=3.763;HaplotypeScore=7.8813;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.472;QD=22.52;ReadPosRankSum=1.719;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:5968,622,0 chrII 66479 . A G 5311.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.19;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5311,600,0 chrII 66503 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.971;DP=246;Dels=0.00;FS=9.688;HaplotypeScore=6.5159;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.316;QD=18.75;ReadPosRankSum=2.947;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:3,242:246:99:4613,531,0 chrII 66566 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=189;Dels=0.00;FS=4.267;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.677;QD=17.72;ReadPosRankSum=1.695;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3349,384,0 chrII 66584 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.88;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3550,402,0 chrII 66717 . C A 2203 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.3515;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.03;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2236,243,0 chrII 66852 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.68;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1312,150,0 chrII 66889 . A T 353 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.06;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:42:386,42,0 chrII 67108 . C A 1277 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.56;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1310,141,0 chrII 67361 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.326;QD=24.02;ReadPosRankSum=1.712;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4084,453,0 chrII 68817 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=167;Dels=0.00;FS=14.080;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.436;QD=23.13;ReadPosRankSum=2.849;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3863,432,0 chrII 68834 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.5765;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.48;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3665,405,0 chrII 69355 . G C 4638.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.98;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4638,522,0 chrII 69616 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.65;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2552,291,0 chrII 69772 . A G 6177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=259;Dels=0.00;FS=14.116;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.864;QD=23.85;ReadPosRankSum=2.392;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:2,255:259:99:6177,702,0 chrII 69817 . A G 5651.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.16;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5651,657,0 chrII 69823 . C T 5140.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.00;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5140,570,0 chrII 69840 . G A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.60;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:4593,493,0 chrII 69901 . G A 5083.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.83;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5083,558,0 chrII 70006 . A G 8113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=23.6649;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.186;QD=22.79;ReadPosRankSum=1.722;SB=-3.695e+03 GT:AD:DP:GQ:PL 1/1:1,354:356:99:8113,912,0 chrII 70394 . G A 7312.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.97;SB=-3.937e+03 GT:AD:DP:GQ:PL 1/1:0,302:305:99:7312,784,0 chrII 70420 . G C 6889.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=19.2368;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.60;SB=-3.782e+03 GT:AD:DP:GQ:PL 1/1:0,311:319:99:6889,777,0 chrII 70638 . A G 8123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=351;Dels=0.00;FS=9.181;HaplotypeScore=20.5724;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.191;QD=23.14;ReadPosRankSum=2.946;SB=-4.379e+03 GT:AD:DP:GQ:PL 1/1:3,348:351:99:8123,909,0 chrII 70774 . C T 8846.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=29.7633;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.04;SB=-3.722e+03 GT:AD:DP:GQ:PL 1/1:0,365:368:99:8846,967,0 chrII 71161 . C T 4627.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.9526;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.56;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4627,516,0 chrII 71276 . C G 4186.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.36;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4186,465,0 chrII 71395 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.0600;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.33;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3391,369,0 chrII 71420 . T C 3102 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.4498;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.39;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3135,348,0 chrII 71553 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.36;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2068,225,0 chrII 71569 . C A 1674 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.67;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1707,186,0 chrII 71621 . A G 839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.956;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=0.067;QD=15.25;ReadPosRankSum=2.360;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:872,102,0 chrII 71634 . A T 653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=9.345;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=0.766;QD=15.19;ReadPosRankSum=1.491;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:81:686,81,0 chrII 71636 . T A 708 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.27;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:741,81,0 chrII 71827 . T C 156.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.661;DP=89;Dels=0.00;FS=8.259;HaplotypeScore=77.9315;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.248;QD=1.75;ReadPosRankSum=-4.131;SB=2.97 GT:AD:DP:GQ:PL 1/1:80,9:89:24:189,24,0 chrII 72018 . C G 4112.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.11;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4112,468,0 chrII 72096 . A T 6016.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=5.9182;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.04;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6016,657,0 chrII 72117 . A G 6384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=294;Dels=0.00;FS=4.138;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.361;QD=21.71;ReadPosRankSum=1.720;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:1,292:294:99:6384,711,0 chrII 72141 . G T 6419.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.47;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6419,714,0 chrII 72233 . A G 8453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=351;Dels=0.00;FS=8.734;HaplotypeScore=20.3850;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-1.929;QD=24.08;ReadPosRankSum=2.435;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:2,347:351:99:8453,948,0 chrII 72371 . A G 700.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.040;DP=402;Dels=0.00;FS=2.928;HaplotypeScore=363.0684;MLEAC=1;MLEAF=0.500;MQ=42.90;MQ0=3;MQRankSum=2.504;QD=1.74;ReadPosRankSum=8.811;SB=-2.950e+02 GT:AD:DP:GQ:PL 0/1:333,69:402:99:730,0,1163 chrII 72374 . A G 1045.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.748;DP=399;Dels=0.00;FS=3.544;HaplotypeScore=296.3721;MLEAC=1;MLEAF=0.500;MQ=42.60;MQ0=3;MQRankSum=-4.251;QD=2.62;ReadPosRankSum=-5.734;SB=-3.162e+03 GT:AD:DP:GQ:PL 0/1:76,323:399:99:1075,0,871 chrII 72380 . A G 1876.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;DP=402;Dels=0.00;FS=0.399;HaplotypeScore=238.9198;MLEAC=1;MLEAF=0.500;MQ=42.14;MQ0=3;MQRankSum=-2.423;QD=4.67;ReadPosRankSum=3.478;SB=-2.795e+03 GT:AD:DP:GQ:PL 0/1:122,278:402:99:1906,0,295 chrII 72383 . A G 222.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.492;DP=398;Dels=0.00;FS=5.499;HaplotypeScore=176.4069;MLEAC=1;MLEAF=0.500;MQ=41.95;MQ0=3;MQRankSum=-0.994;QD=0.56;ReadPosRankSum=-4.626;SB=-4.570e+02 GT:AD:DP:GQ:PL 0/1:299,96:398:99:252,0,2110 chrII 72389 . A G 1538.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.694;DP=401;Dels=0.00;FS=7.759;HaplotypeScore=224.6783;MLEAC=1;MLEAF=0.500;MQ=41.73;MQ0=3;MQRankSum=-0.471;QD=3.84;ReadPosRankSum=-8.813;SB=-1.103e+03 GT:AD:DP:GQ:PL 0/1:263,138:401:99:1568,0,1119 chrII 72395 . G A 1979.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.753;DP=393;Dels=0.01;FS=6.351;HaplotypeScore=71.1009;MLEAC=1;MLEAF=0.500;MQ=42.22;MQ0=0;MQRankSum=-5.416;QD=5.04;ReadPosRankSum=10.859;SB=-3.189e+03 GT:AD:DP:GQ:PL 0/1:70,318:389:99:2009,0,983 chrII 72420 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=11.5512;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=11.42;SB=-3.899e+03 GT:AD:DP:GQ:PL 1/1:0,356:356:99:4064,444,0 chrII 73226 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2011,213,0 chrII 73354 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2951,327,0 chrII 73472 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2921,339,0 chrII 73641 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.4128;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.07;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3729,423,0 chrII 73697 . A C 6069.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=19.8652;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.31;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:0,265:272:99:6069,687,0 chrII 73943 . G A 5144.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5144,570,0 chrII 74853 . A T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.98;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4292,480,0 chrII 74920 . C T 2412 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.75;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2445,267,0 chrII 75084 . A G 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.5834;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.429;QD=17.77;ReadPosRankSum=1.347;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2130,240,0 chrII 75564 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.37;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3667,396,0 chrII 75576 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.70;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3467,372,0 chrII 75822 . T C 5066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=218;Dels=0.00;FS=2.577;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=2.074;QD=23.24;ReadPosRankSum=2.949;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:5066,576,0 chrII 75924 . C T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=20.3161;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.06;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4082,456,0 chrII 76203 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=195;Dels=0.00;FS=8.373;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.139;QD=19.82;ReadPosRankSum=2.932;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:3864,447,0 chrII 76212 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.11;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4200,456,0 chrII 76314 . T G 5457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=13.1420;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.007;QD=22.55;ReadPosRankSum=1.689;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,238:242:99:5457,636,0 chrII 76362 . C T 5310.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.4649;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.79;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5310,574,0 chrII 76470 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.16;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4633,534,0 chrII 76676 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.6428;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.51;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2597,282,0 chrII 76725 . G C 2583 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.00;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2616,300,0 chrII 76869 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.62;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2938,315,0 chrII 76953 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.26;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3885,441,0 chrII 77034 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.13;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3306,363,0 chrII 77073 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=134;Dels=0.00;FS=7.624;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.000;QD=21.31;ReadPosRankSum=2.413;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2889,324,0 chrII 77094 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.47;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3426,372,0 chrII 77154 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.85;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3278,363,0 chrII 77328 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.271;QD=22.74;ReadPosRankSum=1.705;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2944,336,0 chrII 77577 . T C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.538;HaplotypeScore=10.7784;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.648;QD=20.73;ReadPosRankSum=1.706;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2770,321,0 chrII 77651 . T C 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.323;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.230;QD=20.03;ReadPosRankSum=1.707;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2837,327,0 chrII 77658 . C A 3091 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=21.62;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3124,342,0 chrII 77699 . T A 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=153;Dels=0.00;FS=8.568;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.509;QD=19.82;ReadPosRankSum=2.385;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3066,330,0 chrII 77714 . G C 2713 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.33;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2746,306,0 chrII 77736 . G T 2482 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=16.66;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2515,285,0 chrII 77748 . A G 2255 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=16.22;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2288,264,0 chrII 78234 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=134;Dels=0.00;FS=2.994;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.959;QD=23.09;ReadPosRankSum=2.412;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:3127,357,0 chrII 78701 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.78;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2568,282,0 chrII 78705 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.97;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2508,270,0 chrII 79121 . C T 5586.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.16;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5586,604,0 chrII 79329 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.244;QD=22.55;ReadPosRankSum=1.709;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3360,372,0 chrII 79359 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.21;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2787,309,0 chrII 79464 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=124;Dels=0.00;FS=2.867;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.190;QD=21.52;ReadPosRankSum=2.410;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2701,303,0 chrII 79692 . A C 2226 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2259,255,0 chrII 79837 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.22;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2649,285,0 chrII 79876 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.91;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2040,231,0 chrII 79997 . A G 1041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.069;QD=20.82;ReadPosRankSum=1.594;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1074,123,0 chrII 80052 . A C 663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.286;QD=20.72;ReadPosRankSum=1.621;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,30:32:78:696,78,0 chrII 80186 . C G 283 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.43;MQ0=0;QD=18.87;SB=-1.819e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:36:316,36,0 chrII 80573 . A G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.356;QD=21.59;ReadPosRankSum=2.368;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2645,300,0 chrII 80838 . A T 2120 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.55;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2153,234,0 chrII 81136 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=139;Dels=0.00;FS=6.849;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.009;QD=21.94;ReadPosRankSum=2.307;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3083,357,0 chrII 81655 . T C 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=201;Dels=0.00;FS=3.376;HaplotypeScore=12.6577;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.455;QD=21.39;ReadPosRankSum=1.697;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4299,480,0 chrII 81826 . C T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4617,504,0 chrII 81997 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=189;Dels=0.00;FS=2.300;HaplotypeScore=13.4756;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.814;QD=20.90;ReadPosRankSum=2.771;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:3950,450,0 chrII 82087 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=164;Dels=0.00;FS=3.376;HaplotypeScore=15.6914;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.495;QD=22.46;ReadPosRankSum=1.689;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3683,411,0 chrII 82573 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3308,375,0 chrII 83659 . G A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.86;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4240,462,0 chrII 83662 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=3.307;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.503;QD=20.69;ReadPosRankSum=1.714;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4096,465,0 chrII 83698 . C T 4429.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.51;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4429,501,0 chrII 83713 . G C 4088.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.70;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,226:231:99:4088,459,0 chrII 83944 . G A 5430.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.51;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5430,594,0 chrII 84352 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.24;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1803,198,0 chrII 84532 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-0.608;QD=23.44;ReadPosRankSum=1.709;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3539,396,0 chrII 84553 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.87;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3871,426,0 chrII 84589 . C G 2881 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.4602;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.05;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2914,336,0 chrII 84590 . C G 2971 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=17.48;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3004,336,0 chrII 84631 . C G 3039 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4991;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.53;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3072,348,0 chrII 84823 . C T 6351.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=21.6516;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.18;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:6351,693,0 chrII 84862 . C T 6693.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.08;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6693,732,0 chrII 84976 . C T 5249.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.34;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5249,570,0 chrII 85339 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3942,450,0 chrII 85504 . T C 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3162;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.140;QD=20.75;ReadPosRankSum=1.709;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3229,366,0 chrII 85528 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.57;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3430,390,0 chrII 85816 . A G 4618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=206;Dels=0.00;FS=4.162;HaplotypeScore=15.1789;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.336;QD=22.42;ReadPosRankSum=1.715;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4618,537,0 chrII 85903 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4821,525,0 chrII 86293 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.80;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4165,459,0 chrII 86416 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.25;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4038,468,0 chrII 86465 . T A 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=3.979;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-0.384;QD=21.15;ReadPosRankSum=1.638;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3912,438,0 chrII 86473 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.4736;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=19.60;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3822,435,0 chrII 86508 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.85;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3970,432,0 chrII 86518 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.12;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3748,414,0 chrII 86533 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.62;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3817,432,0 chrII 86699 . A G 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.040;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.5589;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.855;QD=21.49;ReadPosRankSum=-0.029;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4599,493,0 chrII 86784 . C G 4733.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.1685;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.71;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4733,525,0 chrII 87016 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3344,375,0 chrII 87058 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.165;QD=22.78;ReadPosRankSum=1.648;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3758,438,0 chrII 87294 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.30;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3281,357,0 chrII 87772 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.011;QD=21.99;ReadPosRankSum=1.666;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3496,399,0 chrII 87809 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.03;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3465,393,0 chrII 87833 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.132;QD=20.78;ReadPosRankSum=1.616;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3719,420,0 chrII 88022 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.51;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2012,216,0 chrII 88046 . T C 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=89;Dels=0.00;FS=11.059;HaplotypeScore=12.8198;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.574;QD=19.24;ReadPosRankSum=2.338;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1745,198,0 chrII 88087 . T G 1441 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.47;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1474,168,0 chrII 88154 . T C 872 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=9.0139;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=15.30;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:905,105,0 chrII 88289 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=25.78;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2044,225,0 chrII 89547 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.680;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.720;QD=24.66;ReadPosRankSum=1.687;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3823,420,0 chrII 89612 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=159;Dels=0.00;FS=4.161;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.882;QD=21.77;ReadPosRankSum=-0.512;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3461,351,0 chrII 89621 . A C 3299.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.2341;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.75;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3299,390,0 chrII 89628 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.00;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3340,381,0 chrII 89733 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3528,381,0 chrII 89785 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.578;QD=23.88;ReadPosRankSum=1.644;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3749,426,0 chrII 90196 . C A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.95;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3776,414,0 chrII 90223 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.84;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3243,351,0 chrII 90685 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.77;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2481,276,0 chrII 90715 . G C 2575 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.29;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2608,297,0 chrII 92062 . T G 2392 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2425,279,0 chrII 92119 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.08;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1888,207,0 chrII 92362 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2530,276,0 chrII 92395 . C A 2662 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.98;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2695,294,0 chrII 92818 . T C 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.614;QD=22.91;ReadPosRankSum=1.703;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2713,315,0 chrII 93100 . A G 4297.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.10;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4297,489,0 chrII 93411 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=95;Dels=0.00;FS=7.549;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.351;QD=21.53;ReadPosRankSum=1.694;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,90:95:99:2078,234,0 chrII 93549 . T C 993 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.57;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1026,114,0 chrII 93696 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.34;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1970,231,0 chrII 93731 . A T 2020 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.25;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2053,222,0 chrII 93772 . C T 2241 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.97;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2274,246,0 chrII 93782 . T C 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=2.679;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.171;QD=19.58;ReadPosRankSum=2.381;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2167,240,0 chrII 93811 . T C 2643 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.49;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2676,303,0 chrII 93929 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.8516;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.57;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4077,444,0 chrII 93981 . A G 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=145;Dels=0.00;FS=6.061;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.368;QD=20.22;ReadPosRankSum=2.952;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2965,339,0 chrII 94857 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.51;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3511,408,0 chrII 95078 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=9.475;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=1.598;QD=20.71;ReadPosRankSum=2.372;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2663,303,0 chrII 95093 . T G 2669 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.53;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2702,309,0 chrII 95270 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.37;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2382,267,0 chrII 95343 . T C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=3.023;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.392;QD=22.10;ReadPosRankSum=2.377;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3039,339,0 chrII 95360 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.255;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.166;QD=21.01;ReadPosRankSum=1.708;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3122,351,0 chrII 95376 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.79;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3235,360,0 chrII 96328 . A G 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8764;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=1.386;QD=19.82;ReadPosRankSum=1.675;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1222,138,0 chrII 96610 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1523,168,0 chrII 96664 . A G 2452 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.2946;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.35;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2485,282,0 chrII 96789 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3022,342,0 chrII 97068 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.497;DP=178;Dels=0.00;FS=11.318;HaplotypeScore=16.9501;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.518;QD=20.63;ReadPosRankSum=3.784;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:5,170:178:99:3673,408,0 chrII 97341 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=3.741;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-1.299;QD=15.28;ReadPosRankSum=1.711;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2600,297,0 chrII 97345 . T C 2625 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.2726;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=15.81;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2658,297,0 chrII 97530 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=155;Dels=0.00;FS=3.036;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.343;QD=22.10;ReadPosRankSum=2.386;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3426,387,0 chrII 97557 . G A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.74;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3639,414,0 chrII 97590 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=3.119;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.299;QD=22.75;ReadPosRankSum=1.711;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3685,417,0 chrII 97676 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.96;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3354,384,0 chrII 97884 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.09;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3058,336,0 chrII 98301 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=8.363;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.935;QD=24.01;ReadPosRankSum=2.396;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3361,375,0 chrII 98470 . T A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.0661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3262,354,0 chrII 98568 . T C 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.281;QD=23.28;ReadPosRankSum=2.395;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,177:182:99:4237,471,0 chrII 98703 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.9682;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.66;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3430,384,0 chrII 98853 . G C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.67;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3445,405,0 chrII 98907 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.05;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3804,414,0 chrII 98940 . A T 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.388;QD=23.01;ReadPosRankSum=1.631;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3935,435,0 chrII 99188 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.11;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3069,336,0 chrII 99228 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=172;Dels=0.00;FS=6.356;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.664;QD=20.28;ReadPosRankSum=2.378;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3489,405,0 chrII 99630 . G C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.345;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5667;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.980;QD=21.39;ReadPosRankSum=-0.889;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,151:156:99:3337,369,0 chrII 100295 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2149,234,0 chrII 100367 . A T 2859 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2892,318,0 chrII 100413 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3336,384,0 chrII 101103 . A G 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.599;QD=20.91;ReadPosRankSum=1.700;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2270,252,0 chrII 101613 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=16.63;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1164,129,0 chrII 101633 . A G 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;MQRankSum=-1.223;QD=11.09;ReadPosRankSum=1.681;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:90:787,90,0 chrII 101636 . C T 711 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=10.01;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:81:744,81,0 chrII 101646 . G A 563 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=8.66;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:66:596,66,0 chrII 101651 . T A 512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;MQRankSum=-1.534;QD=7.31;ReadPosRankSum=1.683;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:63:545,63,0 chrII 101671 . T A 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=0;MQRankSum=-0.259;QD=11.36;ReadPosRankSum=1.692;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1021,114,0 chrII 101689 . A T 1085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.361;DP=96;Dels=0.00;FS=4.771;HaplotypeScore=2.9600;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;MQRankSum=1.624;QD=11.30;ReadPosRankSum=1.660;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1118,126,0 chrII 101691 . G A 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=4.771;HaplotypeScore=2.5252;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=0;MQRankSum=-0.397;QD=11.13;ReadPosRankSum=1.696;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,95:99:99:1135,126,0 chrII 101704 . T C 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8607;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=-1.688;QD=11.21;ReadPosRankSum=2.406;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1300,147,0 chrII 102053 . T C 5532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=299;Dels=0.00;FS=17.684;HaplotypeScore=16.1761;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.841;QD=18.50;ReadPosRankSum=3.368;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:4,295:299:99:5532,630,0 chrII 102116 . A G 5565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=261;Dels=0.00;FS=5.352;HaplotypeScore=12.1692;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.384;QD=21.32;ReadPosRankSum=2.942;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:3,256:261:99:5565,642,0 chrII 102386 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=179;Dels=0.00;FS=2.814;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.858;QD=21.99;ReadPosRankSum=2.408;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,174:179:99:3937,450,0 chrII 102419 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.54;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3854,423,0 chrII 102432 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=7.434;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.446;QD=22.76;ReadPosRankSum=2.418;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3574,402,0 chrII 102815 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.48;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3921,438,0 chrII 103652 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.08;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2842,309,0 chrII 104099 . A C 3625.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.49;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3625,408,0 chrII 104242 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.90;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3056,336,0 chrII 104372 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.72;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2242,252,0 chrII 104384 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.74;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2480,270,0 chrII 104459 . C T 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.866;QD=23.35;ReadPosRankSum=-1.559;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2415,257,0 chrII 104490 . A G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.378;QD=22.49;ReadPosRankSum=1.653;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1990,225,0 chrII 104512 . C A 1904 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.67;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1937,210,0 chrII 104537 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.79;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1821,207,0 chrII 104641 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.13;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2531,285,0 chrII 104669 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.37;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2248,252,0 chrII 104735 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.41;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2538,297,0 chrII 104809 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9342;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.51;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2236,252,0 chrII 104819 . T C 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.567;QD=18.37;ReadPosRankSum=1.672;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2201,243,0 chrII 104834 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9687;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.73;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2337,261,0 chrII 104915 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.34;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3446,375,0 chrII 105289 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.226;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.620;QD=22.90;ReadPosRankSum=1.704;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2895,321,0 chrII 105316 . T C 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=116;Dels=0.00;FS=2.940;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.478;QD=19.30;ReadPosRankSum=2.385;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2272,255,0 chrII 105376 . T C 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.421;QD=20.05;ReadPosRankSum=1.638;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2258,258,0 chrII 105422 . A G 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=3.921;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.296;QD=23.41;ReadPosRankSum=1.701;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2678,300,0 chrII 105449 . A G 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=7.493;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.717;QD=22.34;ReadPosRankSum=2.412;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2982,339,0 chrII 105799 . C T 5234.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.0892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5234,567,0 chrII 105865 . G A 5058.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.0520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5058,552,0 chrII 105973 . A G 6735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=283;Dels=0.00;FS=2.925;HaplotypeScore=11.7413;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.148;QD=23.80;ReadPosRankSum=2.406;SB=-3.171e+03 GT:AD:DP:GQ:PL 1/1:2,279:283:99:6735,744,0 chrII 106303 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3986,456,0 chrII 106348 . T A 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.110;DP=181;Dels=0.00;FS=7.687;HaplotypeScore=15.0700;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.767;QD=21.89;ReadPosRankSum=2.341;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3962,432,0 chrII 106396 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.2544;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.34;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3148,351,0 chrII 107123 . A T 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.886;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.401;QD=22.83;ReadPosRankSum=1.702;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2658,285,0 chrII 107136 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.20;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2675,297,0 chrII 107418 . T C 2639 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.36;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2672,300,0 chrII 107438 . A T 2709 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7670;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.57;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2742,303,0 chrII 107671 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.02;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2786,309,0 chrII 107704 . A C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=3.627;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.153;QD=22.12;ReadPosRankSum=1.248;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3063,348,0 chrII 107779 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.06;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2915,324,0 chrII 107862 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.07;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3786,423,0 chrII 107917 . G C 3044 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.24;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3077,351,0 chrII 108149 . C T 4545.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0535;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=24.97;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4545,489,0 chrII 108239 . C T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.17;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4150,468,0 chrII 108303 . C T 4626.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.85;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4626,504,0 chrII 108357 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.59;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3809,417,0 chrII 108366 . A T 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=186;Dels=0.00;FS=6.428;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.178;QD=18.92;ReadPosRankSum=2.397;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3519,387,0 chrII 108375 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.68;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3542,396,0 chrII 108408 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.102;QD=18.36;ReadPosRankSum=1.677;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3433,393,0 chrII 108452 . T A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.28;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4260,456,0 chrII 108510 . T C 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.641;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.404;QD=20.37;ReadPosRankSum=1.685;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3068,354,0 chrII 108543 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.18;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3452,387,0 chrII 108645 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.71;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4042,444,0 chrII 108764 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=138;Dels=0.00;FS=6.091;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.343;QD=21.92;ReadPosRankSum=1.037;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3058,332,0 chrII 108822 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2965,336,0 chrII 108951 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2827,303,0 chrII 109135 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2773,300,0 chrII 109197 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3256,369,0 chrII 109488 . T G 4309.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.20;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4309,480,0 chrII 110028 . C G 1341 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.38;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1374,153,0 chrII 110152 . T C 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.361;QD=20.18;ReadPosRankSum=1.516;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1970,225,0 chrII 110153 . T G 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.414;QD=19.73;ReadPosRankSum=1.657;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1868,216,0 chrII 110550 . T C 3886.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.86;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3886,432,0 chrII 110627 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=161;Dels=0.00;FS=11.178;HaplotypeScore=10.0991;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.981;QD=21.32;ReadPosRankSum=2.931;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:3,156:161:99:3432,387,0 chrII 110641 . T A 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=3.446;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.585;QD=23.12;ReadPosRankSum=1.644;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3630,399,0 chrII 110721 . G A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.07;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4308,465,0 chrII 110746 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.9553;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.352;QD=21.11;ReadPosRankSum=1.271;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:3652,411,0 chrII 110917 . A G 5624.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.8941;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.77;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,240:247:99:5624,636,0 chrII 111288 . A C 2971 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1526;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=16.32;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3004,336,0 chrII 111304 . T G 2849 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=16.10;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2882,321,0 chrII 111306 . A C 2804 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=15.66;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:2837,330,0 chrII 111739 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.28;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3336,372,0 chrII 111751 . T G 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=6.544;HaplotypeScore=13.6588;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.553;QD=20.24;ReadPosRankSum=2.395;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3644,417,0 chrII 111931 . T G 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=193;Dels=0.00;FS=5.626;HaplotypeScore=12.1058;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.380;QD=23.67;ReadPosRankSum=2.964;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4568,528,0 chrII 111970 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.2820;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.90;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4255,465,0 chrII 111999 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.38;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3528,402,0 chrII 112018 . T G 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=163;Dels=0.00;FS=3.939;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.022;QD=20.47;ReadPosRankSum=1.668;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3336,375,0 chrII 112335 . C A 2134 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.95;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2167,237,0 chrII 112399 . G A 2280 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.75;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2313,255,0 chrII 112457 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.8319;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.45;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3424,372,0 chrII 112527 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.8125;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.74;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3727,432,0 chrII 112618 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=147;Dels=0.00;FS=10.544;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.733;QD=20.68;ReadPosRankSum=2.925;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3073,357,0 chrII 112684 . C A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4071,444,0 chrII 113236 . A G 6296.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.43;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,321:324:99:6296,729,0 chrII 113336 . G A 5710.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.7193;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.75;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5710,627,0 chrII 113452 . C T 5268.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.8616;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.52;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5268,582,0 chrII 113971 . G A 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.1222;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.807;QD=22.84;ReadPosRankSum=-1.152;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4385,469,0 chrII 114016 . G A 5340.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.6933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5340,582,0 chrII 114676 . G A 5135.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.92;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5135,558,0 chrII 114766 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3513,402,0 chrII 115202 . A G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=106;Dels=0.00;FS=2.666;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.290;QD=22.50;ReadPosRankSum=2.380;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2418,273,0 chrII 115241 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.53;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2715,297,0 chrII 115624 . A G 2157 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.59;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2190,252,0 chrII 115630 . A G 2078 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=17.91;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2111,240,0 chrII 115635 . C T 2102 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=17.52;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2135,231,0 chrII 115637 . T C 1971 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=16.16;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2004,222,0 chrII 115719 . C A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.83;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3646,393,0 chrII 115894 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.90;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3721,435,0 chrII 116084 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.25;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3056,330,0 chrII 116102 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.96;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:2764,297,0 chrII 116107 . A G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.839;DP=168;Dels=0.00;FS=3.952;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.262;QD=15.32;ReadPosRankSum=4.080;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:6,161:168:99:2607,291,0 chrII 116168 . T A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.33;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3245,354,0 chrII 116257 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.64;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3830,429,0 chrII 116476 . A G 5121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=227;Dels=0.00;FS=3.474;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-0.404;QD=22.56;ReadPosRankSum=1.686;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5121,582,0 chrII 116518 . C T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.89;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3852,417,0 chrII 116701 . C T 3533.01 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7096;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.41;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3533,402,0 chrII 116704 . T C 3425.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=177;Dels=0.01;FS=9.877;HaplotypeScore=6.2869;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=0.183;QD=19.35;ReadPosRankSum=2.937;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3425,384,0 chrII 116707 . A T 3359.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.736;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.0562;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=-0.511;QD=18.77;ReadPosRankSum=2.804;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3359,375,0 chrII 116766 . T C 3063 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.76;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3096,345,0 chrII 116832 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=5.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.392;QD=21.34;ReadPosRankSum=1.670;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3585,408,0 chrII 116848 . G T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=152.7083;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=20.94;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3686,399,0 chrII 116850 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=152.7083;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.34;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3540,387,0 chrII 116947 . T G 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=2.992;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.520;QD=22.26;ReadPosRankSum=2.409;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4073,462,0 chrII 117726 . G A 4957.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.8034;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.00;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4957,543,0 chrII 117972 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.62;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4087,453,0 chrII 118304 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3900,420,0 chrII 118370 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3573,405,0 chrII 118921 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.70;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2871,312,0 chrII 118953 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.75;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2384,264,0 chrII 119248 . T C 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=4.4045;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.861;QD=21.25;ReadPosRankSum=0.199;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1244,144,0 chrII 119450 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.5321;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.28;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4104,450,0 chrII 119490 . A G 3896.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.06;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3896,459,0 chrII 119499 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=5.666;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.276;QD=20.91;ReadPosRankSum=1.695;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3952,462,0 chrII 119918 . T G 2677 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.88;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2710,303,0 chrII 119934 . T C 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=111;Dels=0.00;FS=2.933;HaplotypeScore=5.3728;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.168;QD=22.93;ReadPosRankSum=2.383;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2578,285,0 chrII 120122 . T C 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.104;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.9234;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.248;QD=20.45;ReadPosRankSum=1.025;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2364,232,0 chrII 120369 . G C 2112 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2145,243,0 chrII 120427 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2633,288,0 chrII 120585 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2374,276,0 chrII 121110 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.07;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2199,243,0 chrII 121194 . G A 2642 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2675,288,0 chrII 121333 . T C 2579 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.88;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2612,294,0 chrII 121421 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6168;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.34;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2338,255,0 chrII 121576 . C G 2682 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2715,303,0 chrII 121643 . A G 1990 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.69;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2023,225,0 chrII 121908 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3612,393,0 chrII 122010 . T C 2898 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.79;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2931,324,0 chrII 122996 . G A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.89;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4417,477,0 chrII 123008 . G A 4027.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.19;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4027,447,0 chrII 123103 . T A 4538.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.25;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4538,492,0 chrII 123320 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.516;QD=21.11;ReadPosRankSum=1.663;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3220,375,0 chrII 123635 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.0880;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.54;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2758,303,0 chrII 123800 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.01;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2674,285,0 chrII 123940 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3275,354,0 chrII 124174 . C G 3041 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=20.69;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3074,345,0 chrII 124286 . C A 2563 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.18;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2596,285,0 chrII 124298 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.61;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2485,273,0 chrII 124505 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=143;Dels=0.00;FS=3.036;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.040;QD=22.31;ReadPosRankSum=2.398;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3224,375,0 chrII 124574 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=11.7791;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.599;QD=20.64;ReadPosRankSum=1.666;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2180,249,0 chrII 124617 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.776;QD=20.16;ReadPosRankSum=1.672;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2412,279,0 chrII 124916 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0622;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=24.56;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4176,447,0 chrII 124942 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.28;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3724,420,0 chrII 124959 . A C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=188;Dels=0.00;FS=3.033;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.098;QD=20.95;ReadPosRankSum=2.410;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3939,438,0 chrII 125552 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.11;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2482,282,0 chrII 125762 . T C 2953 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.87;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2986,345,0 chrII 125786 . G T 3124 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.14;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3157,348,0 chrII 125843 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.49;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2848,309,0 chrII 126130 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1416,153,0 chrII 126263 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.6205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.577;QD=22.72;ReadPosRankSum=1.655;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3078,348,0 chrII 126921 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4092,462,0 chrII 127620 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=15.24;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:993,111,0 chrII 127625 . A G 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=0.085;QD=14.48;ReadPosRankSum=1.675;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:916,105,0 chrII 127679 . T C 1064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=66;Dels=0.00;FS=18.280;HaplotypeScore=6.6010;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=2.032;QD=16.12;ReadPosRankSum=1.724;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1097,120,0 chrII 128153 . A C 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=203;Dels=0.00;FS=3.463;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.046;QD=21.90;ReadPosRankSum=1.663;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4445,504,0 chrII 128244 . G T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.82;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4456,483,0 chrII 128248 . G A 4369.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=20.80;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4369,474,0 chrII 128257 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=213;Dels=0.00;FS=6.033;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.552;QD=19.06;ReadPosRankSum=2.854;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:4060,456,0 chrII 128479 . T G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-0.849;QD=20.43;ReadPosRankSum=1.709;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3098,348,0 chrII 128480 . T A 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-1.100;QD=21.66;ReadPosRankSum=1.709;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3238,348,0 chrII 128513 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=140;Dels=0.00;FS=3.042;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.080;QD=19.41;ReadPosRankSum=2.397;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2750,318,0 chrII 128547 . A G 2900 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.01;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2933,336,0 chrII 128669 . A G 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.149;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.427;QD=19.56;ReadPosRankSum=1.689;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3163,369,0 chrII 128879 . A C 4779.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.5288;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.90;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4779,528,0 chrII 128957 . C T 5892.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5892,651,0 chrII 129254 . C T 3818.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.45;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3818,414,0 chrII 129308 . T A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.55;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3340,375,0 chrII 129324 . G T 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=3.522;HaplotypeScore=9.7092;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.107;QD=20.50;ReadPosRankSum=-0.914;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:3067,336,0 chrII 129461 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.2015;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.01;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4028,435,0 chrII 129488 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=171;Dels=0.00;FS=5.840;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.290;QD=20.84;ReadPosRankSum=2.959;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3564,402,0 chrII 129791 . T A 5187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=230;Dels=0.00;FS=3.364;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.295;QD=22.55;ReadPosRankSum=1.702;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5187,582,0 chrII 129943 . G A 4694.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.8529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.35;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4694,513,0 chrII 130349 . G A 5218.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.50;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5218,573,0 chrII 130407 . A G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=197;Dels=0.00;FS=2.563;HaplotypeScore=21.8641;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.036;QD=20.47;ReadPosRankSum=2.954;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:3,192:197:99:4032,462,0 chrII 130988 . T C 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=3.040;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.068;QD=22.75;ReadPosRankSum=2.378;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3150,357,0 chrII 131051 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.0618;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.09;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3522,405,0 chrII 131705 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.65;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3238,354,0 chrII 131783 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2751;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.91;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3505,396,0 chrII 132333 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3673,408,0 chrII 132460 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=4.210;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.565;QD=23.15;ReadPosRankSum=1.684;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3403,390,0 chrII 132576 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.91;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3660,402,0 chrII 132945 . A G 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=184;Dels=0.00;FS=4.519;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.734;QD=24.75;ReadPosRankSum=1.713;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4554,504,0 chrII 132975 . T A 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.5268;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=1.697;QD=20.85;ReadPosRankSum=1.628;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4150,465,0 chrII 133107 . A G 6360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=276;Dels=0.00;FS=3.530;HaplotypeScore=16.9537;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.581;QD=23.04;ReadPosRankSum=1.719;SB=-3.115e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:6360,702,0 chrII 133163 . G C 6540.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=14.9480;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.03;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,280:284:99:6540,738,0 chrII 133440 . A G 6292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.705;DP=280;Dels=0.00;FS=15.691;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.943;QD=22.47;ReadPosRankSum=3.828;SB=-3.352e+03 GT:AD:DP:GQ:PL 1/1:5,273:280:99:6292,734,0 chrII 133590 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.93;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3559,411,0 chrII 133595 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.658;QD=19.40;ReadPosRankSum=1.714;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3667,423,0 chrII 133612 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.08;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3219,366,0 chrII 133654 . T A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.83;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3353,360,0 chrII 133779 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.65;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1974,216,0 chrII 133938 . A C 744 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.2980;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:87:777,87,0 chrII 134872 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=150;Dels=0.00;FS=6.286;HaplotypeScore=12.1047;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.008;QD=21.49;ReadPosRankSum=2.400;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3256,363,0 chrII 135630 . T A 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.622;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.542;QD=22.63;ReadPosRankSum=1.627;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2273,255,0 chrII 135667 . A C 2447 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.30;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2480,276,0 chrII 135796 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.62;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2411,270,0 chrII 135971 . T A 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.638;DP=121;Dels=0.00;FS=4.234;HaplotypeScore=13.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.328;QD=21.07;ReadPosRankSum=3.598;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:5,115:121:99:2583,291,0 chrII 136064 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=32.0898;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.92;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4034,462,0 chrII 136632 . T G 1888 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.52;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1921,219,0 chrII 136840 . A T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7751;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.34;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4357,480,0 chrII 136976 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6820;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.657;QD=23.66;ReadPosRankSum=1.544;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4354,471,0 chrII 137126 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.44;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4088,468,0 chrII 137272 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.03;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3543,402,0 chrII 137392 . G C 4500.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.0637;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.91;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4500,522,0 chrII 137745 . A G 2126 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2159,255,0 chrII 137788 . T C 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=24.47;ReadPosRankSum=-1.199;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1942,206,0 chrII 137859 . T G 1634 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=19.93;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1667,189,0 chrII 137868 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.96;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1720,198,0 chrII 137948 . A G 3101 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.15;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3134,342,0 chrII 138068 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=22.39;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2809,309,0 chrII 138095 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=23.18;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2745,294,0 chrII 138102 . A G 2531 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=22.01;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2564,291,0 chrII 138167 . T C 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=81;Dels=0.00;FS=4.205;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.110;QD=20.06;ReadPosRankSum=1.688;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1658,189,0 chrII 138334 . A G 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=117;Dels=0.00;FS=6.255;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.456;QD=18.33;ReadPosRankSum=1.671;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2178,246,0 chrII 138346 . T C 2035 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.85;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2068,237,0 chrII 138529 . G T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.51;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4976,540,0 chrII 138686 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=22.42;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3879,414,0 chrII 138689 . C A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.64;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3715,405,0 chrII 138698 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.99;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3694,402,0 chrII 138835 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0127;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.527;QD=23.73;ReadPosRankSum=1.682;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3275,372,0 chrII 139079 . T G 3045 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3078,354,0 chrII 139949 . C G 3348.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.7715;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.67;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3348,393,0 chrII 140021 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3468,378,0 chrII 140131 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.139;QD=19.54;ReadPosRankSum=1.542;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2886,324,0 chrII 140383 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.940;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.906;QD=23.25;ReadPosRankSum=2.414;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3242,372,0 chrII 140643 . C A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.6117;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3494,378,0 chrII 140884 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.80;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3150,345,0 chrII 141015 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.22;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3803,408,0 chrII 141175 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=23.74;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4297,474,0 chrII 141191 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.38;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3956,444,0 chrII 141207 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.220;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.163;QD=19.43;ReadPosRankSum=1.671;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3303,372,0 chrII 141215 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=18.49;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3139,351,0 chrII 141553 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.141;QD=23.89;ReadPosRankSum=1.091;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3258,333,0 chrII 141579 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.58;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2903,318,0 chrII 141987 . A T 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.337;QD=21.24;ReadPosRankSum=2.303;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1817,201,0 chrII 142133 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.3433;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.06;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1672,186,0 chrII 142181 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=17.99;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1598,177,0 chrII 142186 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=17.46;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1657,180,0 chrII 142208 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=17.38;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1806,195,0 chrII 142364 . A G 4612.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.1969;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.53;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4612,522,0 chrII 142625 . C T 4524.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.4390;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.44;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4524,507,0 chrII 142721 . C A 4658.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4658,522,0 chrII 142804 . C G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.11;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3305,372,0 chrII 142980 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2620,285,0 chrII 143147 . T G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=3.424;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.959;QD=24.26;ReadPosRankSum=1.703;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2968,327,0 chrII 143298 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=87;Dels=0.00;FS=3.062;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.428;QD=21.70;ReadPosRankSum=1.691;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1921,222,0 chrII 143354 . A G 2214 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.50;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2247,252,0 chrII 143613 . A G 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.047;QD=22.40;ReadPosRankSum=1.656;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2094,240,0 chrII 144820 . T G 3830.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=13.0640;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.76;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3830,444,0 chrII 144853 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.1731;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.84;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4128,465,0 chrII 144937 . T C 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.610;QD=23.30;ReadPosRankSum=1.715;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4659,525,0 chrII 144991 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=189;Dels=0.00;FS=3.369;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.292;QD=22.57;ReadPosRankSum=1.622;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4265,474,0 chrII 145073 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.99;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3199,345,0 chrII 145108 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=170;Dels=0.00;FS=9.667;HaplotypeScore=6.8077;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.089;QD=22.88;ReadPosRankSum=2.959;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3890,441,0 chrII 145399 . G T 5451.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.01;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5451,600,0 chrII 145474 . A G 5287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=241;Dels=0.00;FS=7.557;HaplotypeScore=9.8244;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.191;QD=21.94;ReadPosRankSum=2.398;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:2,236:241:99:5287,594,0 chrII 145486 . A G 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=234;Dels=0.00;FS=7.497;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.372;QD=22.15;ReadPosRankSum=2.429;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5184,576,0 chrII 145751 . G T 1173 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=17.25;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1206,132,0 chrII 145924 . A T 110.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;DP=19;Dels=0.00;FS=13.554;HaplotypeScore=6.3445;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=0.197;QD=5.79;ReadPosRankSum=1.971;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:6,13:19:21:140,0,21 chrII 145998 . T C 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=1.579;QD=24.21;ReadPosRankSum=1.630;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1679,189,0 chrII 146085 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.87;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1367,156,0 chrII 146107 . C A 1709 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.19;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1742,189,0 chrII 146169 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.82;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3058,330,0 chrII 146217 . T G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=147;Dels=0.00;FS=2.570;HaplotypeScore=7.0890;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.322;QD=24.29;ReadPosRankSum=2.952;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3570,393,0 chrII 146248 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.094;DP=166;Dels=0.00;FS=32.297;HaplotypeScore=18.0940;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.745;QD=23.60;ReadPosRankSum=3.970;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:7,158:166:99:3917,441,0 chrII 146312 . C G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.7804;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.65;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4212,486,0 chrII 146333 . G A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.01;FS=0.000;HaplotypeScore=10.3982;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.00;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4246,465,0 chrII 146444 . C T 4888.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.17;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4888,540,0 chrII 146609 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.52;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3445,378,0 chrII 146672 . G T 2933 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.39;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2966,327,0 chrII 146699 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.30;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3240,348,0 chrII 146891 . T C 3196 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.16;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3229,360,0 chrII 147197 . A T 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=3.039;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.411;QD=23.45;ReadPosRankSum=1.663;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3564,384,0 chrII 147245 . T C 3042 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.58;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3075,345,0 chrII 147314 . C G 2837 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.16;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2870,318,0 chrII 147384 . A C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.399;DP=147;Dels=0.00;FS=8.970;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.581;QD=20.47;ReadPosRankSum=3.351;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:4,142:147:99:3042,351,0 chrII 147397 . C G 3025 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.58;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3058,342,0 chrII 147484 . A G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=133;Dels=0.00;FS=3.624;HaplotypeScore=13.2498;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.497;QD=21.36;ReadPosRankSum=1.598;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,128:133:99:2874,324,0 chrII 147789 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.080;QD=23.34;ReadPosRankSum=1.695;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4365,483,0 chrII 148172 . C T 5757.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5757,624,0 chrII 148327 . A T 5625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=251;Dels=0.00;FS=3.205;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.200;QD=22.41;ReadPosRankSum=1.704;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5625,615,0 chrII 148429 . C T 4871.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.9000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4871,552,0 chrII 148600 . T A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5495;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.62;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3845,414,0 chrII 148726 . G T 3197 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9572;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.75;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3230,351,0 chrII 149389 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.1287;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.00;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3760,423,0 chrII 149400 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.151;HaplotypeScore=9.7338;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.755;QD=19.19;ReadPosRankSum=1.714;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3607,405,0 chrII 149762 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.36;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3947,426,0 chrII 149779 . T A 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.197;QD=23.20;ReadPosRankSum=1.711;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3875,420,0 chrII 149857 . T C 2920 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.86;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2953,342,0 chrII 149872 . T C 3041 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.14;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3074,348,0 chrII 150200 . A T 1607 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.72;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1640,177,0 chrII 150296 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.32;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1293,141,0 chrII 150465 . A G 1973 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.42;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2006,234,0 chrII 150492 . G T 1675 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.95;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1708,189,0 chrII 151117 . A G 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.520;QD=20.76;ReadPosRankSum=1.661;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2067,228,0 chrII 151397 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.596;QD=21.63;ReadPosRankSum=1.709;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3310,381,0 chrII 151407 . G T 3082 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.82;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3115,339,0 chrII 151865 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.709;QD=22.70;ReadPosRankSum=1.712;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3995,450,0 chrII 152073 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.57;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3624,396,0 chrII 152171 . G T 2934 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.74;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2967,333,0 chrII 152423 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.31;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3226,354,0 chrII 152483 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.55;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3259,369,0 chrII 152624 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.34;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3571,393,0 chrII 152690 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5931;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.57;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2830,309,0 chrII 152705 . T G 2117 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=17.64;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2150,249,0 chrII 152750 . A C 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.362;QD=17.63;ReadPosRankSum=1.653;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2342,270,0 chrII 152894 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.7750;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.79;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3418,378,0 chrII 153007 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.08;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2947,333,0 chrII 153271 . A T 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.485;QD=20.19;ReadPosRankSum=1.608;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1729,195,0 chrII 153650 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=14.41;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1560,171,0 chrII 153657 . C G 1448 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=13.79;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1481,171,0 chrII 153732 . T A 1842 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1875,204,0 chrII 153787 . T A 2126 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2159,243,0 chrII 154001 . A C 3096 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.59;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3129,363,0 chrII 154142 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.40;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2922,321,0 chrII 154160 . A G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.933;QD=20.23;ReadPosRankSum=1.643;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2400,273,0 chrII 154235 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2967,321,0 chrII 154740 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.6085;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.289;QD=22.52;ReadPosRankSum=1.706;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3028,336,0 chrII 154799 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3753;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.11;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2853,321,0 chrII 154842 . A T 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.209;QD=20.93;ReadPosRankSum=1.667;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2252,243,0 chrII 154926 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.14;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1957,216,0 chrII 155109 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2619,294,0 chrII 155354 . A G 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.709;QD=19.55;ReadPosRankSum=1.680;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2614,297,0 chrII 155739 . T G 2195 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.82;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2228,243,0 chrII 155783 . A G 2249 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.67;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2282,258,0 chrII 156017 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.09;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1811,192,0 chrII 156194 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.33;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1761,195,0 chrII 156203 . C A 1759 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=19.76;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1792,195,0 chrII 156652 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3450,402,0 chrII 156776 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3980,441,0 chrII 157617 . T C 2917 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2950,327,0 chrII 158200 . C T 4980.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.23;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,219:224:99:4980,552,0 chrII 158707 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.08;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4070,435,0 chrII 158800 . G T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=20.62;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3939,435,0 chrII 158803 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.160;DP=199;Dels=0.00;FS=17.809;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.225;QD=19.34;ReadPosRankSum=3.310;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:4,194:199:99:3849,432,0 chrII 158986 . C T 8425.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=23.7904;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.56;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,342:343:99:8425,919,0 chrII 159067 . G A 7907.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=17.2811;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.96;SB=-3.916e+03 GT:AD:DP:GQ:PL 1/1:0,359:360:99:7907,856,0 chrII 159079 . C T 7298.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.12;SB=-3.742e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:7298,796,0 chrII 159139 . T G 7131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.066;DP=338;Dels=0.00;FS=6.323;HaplotypeScore=19.3419;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.642;QD=21.10;ReadPosRankSum=1.074;SB=-4.035e+03 GT:AD:DP:GQ:PL 1/1:2,335:338:99:7131,813,0 chrII 159226 . G A 6956.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=36.0791;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.87;SB=-3.649e+03 GT:AD:DP:GQ:PL 1/1:0,346:350:99:6956,780,0 chrII 159397 . T C 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=244;Dels=0.00;FS=10.338;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.091;QD=17.32;ReadPosRankSum=2.946;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:3,239:244:99:4226,468,0 chrII 159412 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=15.56;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,238:243:99:3781,426,0 chrII 159427 . A G 4502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=281;Dels=0.00;FS=9.950;HaplotypeScore=14.3697;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.925;QD=16.02;ReadPosRankSum=2.953;SB=-3.285e+03 GT:AD:DP:GQ:PL 1/1:3,277:281:99:4502,516,0 chrII 159926 . C A 2709 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=20.22;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2742,309,0 chrII 159931 . T G 2752 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=19.66;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2785,318,0 chrII 159953 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=18.88;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2714,303,0 chrII 159957 . A G 2455 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=17.54;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2488,282,0 chrII 160020 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.2128;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.93;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2265,252,0 chrII 160143 . T G 3072 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.95;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3105,354,0 chrII 160403 . G T 5710.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=15.9726;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.40;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5710,627,0 chrII 160509 . A G 6291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=264;Dels=0.00;FS=3.746;HaplotypeScore=11.3617;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.561;QD=23.83;ReadPosRankSum=1.679;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:6291,705,0 chrII 160618 . C T 7162.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.25;SB=-3.997e+03 GT:AD:DP:GQ:PL 1/1:0,304:308:99:7162,781,0 chrII 160810 . T G 5610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=264;Dels=0.00;FS=3.145;HaplotypeScore=20.3884;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.992;QD=21.25;ReadPosRankSum=1.653;SB=-3.288e+03 GT:AD:DP:GQ:PL 1/1:1,261:264:99:5610,636,0 chrII 161463 . T C 1966 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.34;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1999,225,0 chrII 161484 . T G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.338;QD=19.67;ReadPosRankSum=1.605;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,81:85:99:1705,195,0 chrII 161687 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=108;Dels=0.00;FS=10.446;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.327;QD=23.32;ReadPosRankSum=2.543;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2552,288,0 chrII 161757 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.15;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3205,345,0 chrII 161840 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.843;QD=24.32;ReadPosRankSum=1.701;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2781,312,0 chrII 162251 . A G 4813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=234;Dels=0.00;FS=6.909;HaplotypeScore=7.3840;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.153;QD=20.57;ReadPosRankSum=2.428;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:4813,564,0 chrII 162271 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=222;Dels=0.00;FS=2.450;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.995;QD=19.27;ReadPosRankSum=2.722;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:3,217:222:99:4277,498,0 chrII 162420 . T C 4750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=219;Dels=0.00;FS=6.407;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.575;QD=21.69;ReadPosRankSum=2.405;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4750,543,0 chrII 162680 . A G 2161 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2194,243,0 chrII 162773 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.79;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1379,165,0 chrII 163121 . A G 4625.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4625,513,0 chrII 163854 . T C 4627.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.8358;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.79;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4627,513,0 chrII 163967 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.5144;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.10;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3260,369,0 chrII 163989 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.99;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3628,411,0 chrII 164419 . T C 2277 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.70;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2310,270,0 chrII 164474 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.148;DP=108;Dels=0.00;FS=8.317;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.012;QD=20.26;ReadPosRankSum=2.403;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,104:108:99:2221,249,0 chrII 164851 . T A 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=6.178;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-2.292;QD=22.01;ReadPosRankSum=2.379;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3115,354,0 chrII 164975 . T C 2368 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.57;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2401,267,0 chrII 164995 . T G 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-2.070;QD=15.12;ReadPosRankSum=0.841;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2120,243,0 chrII 165049 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3652;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=16.70;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:2688,300,0 chrII 165178 . C G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.6467;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.16;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3568,405,0 chrII 165525 . G A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.11;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3799,423,0 chrII 165586 . T A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3524,381,0 chrII 165680 . A C 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=144;Dels=0.00;FS=6.681;HaplotypeScore=9.9826;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.528;QD=20.47;ReadPosRankSum=-0.077;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2980,308,0 chrII 165729 . T C 1557 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.46;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1590,186,0 chrII 165877 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=15.10;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1075,120,0 chrII 166019 . T C 985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=31.1842;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.384;QD=23.45;ReadPosRankSum=2.333;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:2,40:42:99:1018,114,0 chrII 166311 . C T 1394 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1427,156,0 chrII 166396 . A T 187.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=17.00;SB=-1.065e+02 GT:AD:DP:GQ:PL 1/1:1,10:11:24:220,24,0 chrII 166460 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.66;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2277,252,0 chrII 166550 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.62;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2159,237,0 chrII 166572 . C T 1938 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.28;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1971,216,0 chrII 166607 . T C 2002 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.64;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2035,228,0 chrII 166703 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.54;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4331,471,0 chrII 167174 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.3513;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.993;QD=22.96;ReadPosRankSum=1.656;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2880,330,0 chrII 167373 . C T 2006 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.46;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2039,219,0 chrII 167426 . G A 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=74;Dels=0.01;FS=6.998;HaplotypeScore=15.6107;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.400;QD=21.41;ReadPosRankSum=2.381;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:2,69:73:99:1617,183,0 chrII 167527 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.09;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1840,207,0 chrII 167650 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.21;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2400,264,0 chrII 167794 . A G 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.346;QD=22.18;ReadPosRankSum=1.705;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2917,336,0 chrII 167821 . A T 2710 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.41;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2743,291,0 chrII 167924 . A T 1956 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.5869;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=21.03;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1989,222,0 chrII 167998 . G A 705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=91;Dels=0.00;FS=4.171;HaplotypeScore=9.9249;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=1.091;QD=7.75;ReadPosRankSum=1.262;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:84:738,84,0 chrII 168065 . T C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.218;QD=24.37;ReadPosRankSum=1.703;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2958,330,0 chrII 168150 . C G 3655.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.29;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3655,429,0 chrII 168194 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.77;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3848,426,0 chrII 168448 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.10;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3372,378,0 chrII 168467 . T G 3149 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.18;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3182,354,0 chrII 169483 . A G 2525 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.96;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2558,291,0 chrII 169496 . G C 2204 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.40;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2237,258,0 chrII 169621 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.37;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2230,252,0 chrII 169818 . C G 3303.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=19.78;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3303,375,0 chrII 169820 . G T 3202 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=19.52;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3235,354,0 chrII 169893 . T C 3143 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.15;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3176,348,0 chrII 169980 . T G 387.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.131;DP=133;Dels=0.02;FS=5.138;HaplotypeScore=619.7241;MLEAC=1;MLEAF=0.500;MQ=36.08;MQ0=0;MQRankSum=0.074;QD=2.91;ReadPosRankSum=-2.029;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:104,25:130:19:417,0,19 chrII 170152 . T C 1359 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=19.41;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1392,159,0 chrII 170167 . C G 1265 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=18.33;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1298,150,0 chrII 170179 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=18.26;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1238,144,0 chrII 170206 . G T 1444 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.78;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1477,162,0 chrII 170442 . T C 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=3.365;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.325;QD=20.94;ReadPosRankSum=1.630;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2169,246,0 chrII 170593 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.6706;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.44;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3645,426,0 chrII 170676 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.76;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4210,453,0 chrII 170790 . T C 5543.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.79;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5543,636,0 chrII 170868 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.11;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3942,420,0 chrII 171433 . A G 2831 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.65;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2864,333,0 chrII 171495 . A T 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=10.317;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.554;QD=24.05;ReadPosRankSum=2.353;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3680,405,0 chrII 171570 . A G 4046.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.5186;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.23;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4046,453,0 chrII 171612 . G C 4230.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.76;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4230,480,0 chrII 171924 . G A 5237.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.47;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5237,562,0 chrII 172113 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=24.57;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4104,450,0 chrII 172171 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=23.25;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3720,399,0 chrII 172178 . C A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=21.74;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3457,375,0 chrII 172223 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-1.270;QD=18.61;ReadPosRankSum=1.709;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2825,318,0 chrII 172245 . C T 2638 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=18.58;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2671,303,0 chrII 172262 . A G 2549 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=19.91;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2582,285,0 chrII 172302 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=14.47;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1639,189,0 chrII 172307 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=15.91;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1719,189,0 chrII 172322 . G T 1406 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.03;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=13.78;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1439,159,0 chrII 172323 . T A 1393 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.03;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=13.66;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1426,159,0 chrII 172338 . T G 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=-0.822;QD=13.15;ReadPosRankSum=1.697;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1335,153,0 chrII 172488 . A G 2902 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=24.18;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2935,321,0 chrII 172681 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2826,309,0 chrII 173028 . T C 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.7403;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.676;QD=22.85;ReadPosRankSum=1.697;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4616,519,0 chrII 173043 . A G 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=5.144;HaplotypeScore=8.3204;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.008;QD=21.35;ReadPosRankSum=1.716;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4696,534,0 chrII 173659 . T C 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.706;QD=22.10;ReadPosRankSum=1.629;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3038,339,0 chrII 174535 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.55;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1903,210,0 chrII 175160 . T A 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.866;QD=23.20;ReadPosRankSum=1.645;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3712,414,0 chrII 175505 . C A 5253.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.1997;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.35;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:5253,570,0 chrII 175526 . A G 4592.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.96;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4592,522,0 chrII 175964 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.74;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3805,420,0 chrII 176084 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=125;Dels=0.00;FS=3.460;HaplotypeScore=11.6638;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.022;QD=20.28;ReadPosRankSum=1.619;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2568,285,0 chrII 176261 . T C 2098 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.3859;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.17;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2131,240,0 chrII 176546 . T C 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.586;QD=23.16;ReadPosRankSum=1.706;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3113,351,0 chrII 176636 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.167;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.8412;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=2.419;QD=23.76;ReadPosRankSum=-1.491;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3802,376,0 chrII 177287 . C G 7070.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=24.5813;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.64;SB=-3.499e+03 GT:AD:DP:GQ:PL 1/1:0,356:360:99:7070,822,0 chrII 177793 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2738,300,0 chrII 178099 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=156;Dels=0.00;FS=8.642;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.496;QD=20.51;ReadPosRankSum=2.292;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3233,381,0 chrII 178447 . A G 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=121;Dels=0.00;FS=4.310;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.239;QD=20.96;ReadPosRankSum=1.702;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,115:121:99:2569,303,0 chrII 178930 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=19.7170;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.73;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:4023,432,0 chrII 179110 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6131;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.35;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3576,390,0 chrII 179146 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.64;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3365,369,0 chrII 179233 . T C 2809 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3587;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.96;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2842,318,0 chrII 179248 . A G 2727 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=20.66;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2760,318,0 chrII 179257 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=20.90;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2917,312,0 chrII 179266 . A G 2678 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.27;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2711,309,0 chrII 180070 . T G 3283.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.04;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3283,366,0 chrII 180168 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=3.482;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.306;QD=22.32;ReadPosRankSum=1.681;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3068,339,0 chrII 180244 . T C 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=2.795;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.367;QD=20.51;ReadPosRankSum=2.390;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2576,294,0 chrII 180298 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.56;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2889,327,0 chrII 180312 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=19.24;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2880,321,0 chrII 180372 . T A 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=135;Dels=0.00;FS=13.109;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-1.097;QD=15.53;ReadPosRankSum=2.948;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2130,234,0 chrII 180379 . A G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.560;QD=15.01;ReadPosRankSum=1.707;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2089,240,0 chrII 180607 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=3.502;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.557;QD=23.24;ReadPosRankSum=0.639;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3928,432,0 chrII 181279 . C T 6011.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.94;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:6011,646,0 chrII 181302 . A G 5415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.210;QD=21.83;ReadPosRankSum=1.718;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5415,600,0 chrII 181425 . A C 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.0869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.235;QD=22.01;ReadPosRankSum=1.677;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4160,474,0 chrII 181705 . C G 4370.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4370,504,0 chrII 182128 . T C 6903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=322;Dels=0.00;FS=3.435;HaplotypeScore=18.4789;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.387;QD=21.44;ReadPosRankSum=1.624;SB=-3.632e+03 GT:AD:DP:GQ:PL 1/1:1,321:322:99:6903,783,0 chrII 182360 . T C 4121.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.92;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4121,456,0 chrII 182436 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.54;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3674,423,0 chrII 182643 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.46;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3571,387,0 chrII 182700 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.21;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3464,393,0 chrII 182892 . G A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.64;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4685,513,0 chrII 182901 . C T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.94;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:4621,519,0 chrII 183084 . A C 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=208;Dels=0.00;FS=5.479;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.971;QD=22.21;ReadPosRankSum=2.928;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4619,519,0 chrII 184236 . G C 2947 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2980,339,0 chrII 184932 . A C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=186;Dels=0.00;FS=2.941;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.126;QD=21.53;ReadPosRankSum=2.410;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4004,444,0 chrII 184941 . T A 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=3.712;HaplotypeScore=4.4428;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.234;QD=21.98;ReadPosRankSum=1.713;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3978,432,0 chrII 185478 . C G 2713 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2746,309,0 chrII 185922 . A G 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.463;QD=21.09;ReadPosRankSum=2.344;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1994,225,0 chrII 186753 . G A 4622.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.80;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4622,510,0 chrII 187142 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.94;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3950,429,0 chrII 187153 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.73;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3864,420,0 chrII 187552 . T A 2140 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.26;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2173,237,0 chrII 187714 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1824;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.76;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3151,342,0 chrII 187744 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.532;DP=128;Dels=0.00;FS=3.878;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.232;QD=23.74;ReadPosRankSum=-0.205;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3072,345,0 chrII 187873 . T C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=3.141;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.086;QD=22.24;ReadPosRankSum=1.321;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2279,261,0 chrII 187957 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.77;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3518,399,0 chrII 188032 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.42;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3858,423,0 chrII 189113 . C A 6052.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-3.151e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6052,660,0 chrII 189209 . T A 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=4.872;HaplotypeScore=11.7961;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.406;QD=21.69;ReadPosRankSum=1.653;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3796,411,0 chrII 189223 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.01;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3487,393,0 chrII 189661 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.5223;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.97;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3691,411,0 chrII 189673 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.740;DP=164;Dels=0.00;FS=10.827;HaplotypeScore=6.7234;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.000;QD=19.70;ReadPosRankSum=3.635;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:5,159:164:99:3263,375,0 chrII 190032 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.06;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4236,486,0 chrII 190128 . T A 4381.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4381,471,0 chrII 190246 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.4998;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.56;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4309,471,0 chrII 190452 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.2930;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.12;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4292,483,0 chrII 190583 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.43;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3889,423,0 chrII 190620 . C G 4427.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.81;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4427,504,0 chrII 190641 . A G 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=3.798;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.409;QD=22.92;ReadPosRankSum=1.715;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4607,507,0 chrII 190670 . T C 4430.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3371;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.60;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4430,492,0 chrII 190881 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.97;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4204,456,0 chrII 191207 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.2715;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.40;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4322,480,0 chrII 191232 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=4.848;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.732;QD=20.56;ReadPosRankSum=1.671;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3536,396,0 chrII 191242 . C A 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.871;QD=20.75;ReadPosRankSum=0.052;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3424,372,0 chrII 191470 . A T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.6243;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.03;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3615,393,0 chrII 191528 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.38;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3694,399,0 chrII 191563 . G T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.39;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3263,369,0 chrII 191613 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.82;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2826,306,0 chrII 192289 . G C 1420 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.11;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1453,171,0 chrII 192398 . T A 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=138;Dels=0.00;FS=5.275;HaplotypeScore=3.7733;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.247;QD=19.85;ReadPosRankSum=3.395;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2772,312,0 chrII 192399 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7733;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.171;QD=20.75;ReadPosRankSum=3.331;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2897,324,0 chrII 192441 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.54;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2950,324,0 chrII 192576 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=177;Dels=0.00;FS=3.882;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.039;QD=21.63;ReadPosRankSum=1.712;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3828,435,0 chrII 193122 . T C 5878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=281;Dels=0.00;FS=6.392;HaplotypeScore=18.9091;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.736;QD=20.92;ReadPosRankSum=2.396;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:2,273:281:99:5878,669,0 chrII 193664 . T C 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.7587;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.629;QD=22.46;ReadPosRankSum=1.681;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4581,525,0 chrII 194226 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0606;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.23;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4529,486,0 chrII 195960 . A T 2169 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.32;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2202,240,0 chrII 196145 . C A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.2830;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.53;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3577,390,0 chrII 196404 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.18;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3064,351,0 chrII 196417 . A G 3094 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.58;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3127,348,0 chrII 196581 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.64;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2820,324,0 chrII 196633 . G A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.68;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3856,420,0 chrII 196681 . A G 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-0.809;QD=20.98;ReadPosRankSum=1.715;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4175,465,0 chrII 196686 . C A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=21.69;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4360,468,0 chrII 196705 . A G 4381.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.69;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4381,486,0 chrII 196732 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=17.50;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3290,366,0 chrII 196745 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=15.56;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:2850,321,0 chrII 197035 . A G 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=91;Dels=0.02;FS=0.000;HaplotypeScore=32.8839;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.706;QD=19.12;ReadPosRankSum=2.394;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1773,195,0 chrII 197121 . C A 970 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=24.87;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1003,108,0 chrII 197157 . C A 146.06 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=6.96;SB=-7.483e-02 GT:AD:DP:GQ:PL 1/1:0,20:21:21:179,21,0 chrII 197246 . G T 406 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=0;QD=20.30;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:439,48,0 chrII 197464 . T C 131.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.747;QD=16.39;ReadPosRankSum=0.747;SB=-5.263e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:18:164,18,0 chrII 197474 . G C 255 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=18.21;SB=-1.329e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:33:288,33,0 chrII 197581 . C T 917 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=19.10;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:950,108,0 chrII 197761 . G A 217.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=4;MQRankSum=1.042;QD=11.43;ReadPosRankSum=-0.810;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:4,15:19:5:248,5,0 chrII 197834 . A T 1183 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.73;MQ0=14;QD=17.14;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:14,55:69:99:1216,135,0 chrII 198241 . A T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.14;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3524,384,0 chrII 198501 . G C 1485 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.92;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1518,171,0 chrII 198512 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.72;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1662,186,0 chrII 198611 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.41;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1953,207,0 chrII 198672 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.92;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2018,219,0 chrII 198782 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.24;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4064,432,0 chrII 198826 . A G 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=118;Dels=0.00;FS=9.618;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.662;QD=20.14;ReadPosRankSum=2.324;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2409,285,0 chrII 199006 . T C 3145 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2032;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.99;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3178,372,0 chrII 199391 . A C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=157;Dels=0.00;FS=3.242;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.562;QD=18.09;ReadPosRankSum=1.710;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:2873,327,0 chrII 199514 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2611;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.40;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2900,321,0 chrII 199753 . A C 3027 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.45;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3060,345,0 chrII 199762 . A C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=157;Dels=0.00;FS=3.181;HaplotypeScore=6.2669;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.066;QD=17.90;ReadPosRankSum=1.710;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:2844,321,0 chrII 199856 . A T 5310.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.50;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5310,579,0 chrII 200008 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.05;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3810,414,0 chrII 200227 . T C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=139;Dels=0.00;FS=9.211;HaplotypeScore=8.9661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.233;QD=21.16;ReadPosRankSum=3.370;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:2974,348,0 chrII 200276 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.59;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3585,390,0 chrII 200483 . G A 4218.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.97;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4218,477,0 chrII 200522 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.109;QD=20.39;ReadPosRankSum=1.714;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3854,447,0 chrII 200530 . G T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.27;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4168,450,0 chrII 201003 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.3017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4316,471,0 chrII 201456 . T C 5953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=255;Dels=0.00;FS=3.535;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-1.392;QD=23.35;ReadPosRankSum=1.691;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5953,666,0 chrII 201611 . T C 5165.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.55;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5165,585,0 chrII 201831 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.62;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4535,504,0 chrII 201932 . T A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.9629;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.00;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4002,447,0 chrII 202108 . A T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.4178;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.51;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4184,453,0 chrII 202184 . C T 5623.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.34;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5623,615,0 chrII 202227 . T A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4377,483,0 chrII 202580 . C G 5745.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=17.6254;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.54;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:5745,648,0 chrII 202724 . T C 4126.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=19.7215;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.28;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4126,471,0 chrII 203030 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.3530;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.95;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3948,441,0 chrII 203566 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=135;Dels=0.00;FS=2.405;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.201;QD=22.44;ReadPosRankSum=3.328;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:4,131:135:99:3063,345,0 chrII 203910 . C G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.331;DP=182;Dels=0.00;FS=3.313;HaplotypeScore=16.8516;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.674;QD=14.62;ReadPosRankSum=1.148;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,177:182:99:2694,321,0 chrII 204186 . C A 5584.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.2792;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.15;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5584,603,0 chrII 204404 . C T 5975.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5975,654,0 chrII 204458 . C T 6274.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=13.4491;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.15;SB=-3.340e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6274,684,0 chrII 204507 . C T 6294.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=10.4639;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.97;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6294,690,0 chrII 204536 . A G 5451.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.4025;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.07;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5451,615,0 chrII 205151 . G A 4660.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.28;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4660,504,0 chrII 205157 . C A 4643.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.91;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4643,504,0 chrII 205382 . T C 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=7.403;HaplotypeScore=13.6705;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.959;QD=22.62;ReadPosRankSum=2.413;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4546,516,0 chrII 205517 . C A 6472.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.15;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6472,711,0 chrII 205559 . C T 4660.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.09;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4660,513,0 chrII 205891 . T C 2228 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.02;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2261,267,0 chrII 206076 . C G 2773 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.26;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2806,324,0 chrII 206083 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.20;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2779,312,0 chrII 207171 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.9653;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.93;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3417,381,0 chrII 207220 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=4.332;HaplotypeScore=6.3735;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.192;QD=24.14;ReadPosRankSum=1.658;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3428,378,0 chrII 207859 . A G 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.179;DP=200;Dels=0.00;FS=13.178;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.364;QD=21.02;ReadPosRankSum=3.372;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:4,195:200:99:4204,483,0 chrII 208024 . T C 4404.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.47;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4404,504,0 chrII 208543 . A G 4978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=206;Dels=0.00;FS=2.990;HaplotypeScore=12.8492;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.125;QD=24.17;ReadPosRankSum=2.414;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4978,561,0 chrII 208607 . G T 5061.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.22;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5061,549,0 chrII 208648 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.0388;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.18;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3579,402,0 chrII 208870 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.69;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3075,342,0 chrII 208879 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.75;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2936,324,0 chrII 208915 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.3081;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.95;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3291,363,0 chrII 209056 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.37;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2896,330,0 chrII 209245 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.19;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3228,363,0 chrII 209271 . T G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=128;Dels=0.00;FS=7.176;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.131;QD=21.94;ReadPosRankSum=2.410;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:2,123:128:99:2841,318,0 chrII 209402 . T G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.358;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.279;QD=22.21;ReadPosRankSum=1.587;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3253,375,0 chrII 209607 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.36;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4461,501,0 chrII 210387 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.339;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.342;QD=24.19;ReadPosRankSum=1.709;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3653,402,0 chrII 210582 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.22;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3400,387,0 chrII 210621 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.2167;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.21;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3209,357,0 chrII 210974 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.7055;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.517;QD=22.94;ReadPosRankSum=1.711;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3717,423,0 chrII 211191 . C G 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.439;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.3296;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.210;QD=21.61;ReadPosRankSum=0.706;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,191:196:99:4235,442,0 chrII 211270 . T C 5662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=3.318;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.725;QD=24.20;ReadPosRankSum=1.480;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5662,636,0 chrII 211332 . G A 6134.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=18.4026;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.54;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6134,661,0 chrII 211581 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.86;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4610,504,0 chrII 211895 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.86;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4223,468,0 chrII 212014 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.36;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3578,399,0 chrII 212351 . G A 890 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.42;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:923,102,0 chrII 212549 . A G 1052 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.13;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1085,132,0 chrII 212764 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.9395;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.60;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4248,462,0 chrII 212803 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.68;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4033,459,0 chrII 212810 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.71;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:3961,441,0 chrII 212877 . T G 4492.01 SnpCluster AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.69;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:4492,504,0 chrII 212882 . A G 4424.01 SnpCluster AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.77;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:4424,492,0 chrII 212886 . C G 4332.01 SnpCluster AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.54;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4332,498,0 chrII 213058 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.78;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4268,465,0 chrII 213376 . C A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.1856;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.70;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4533,495,0 chrII 213397 . T A 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=3.748;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.263;QD=21.21;ReadPosRankSum=1.642;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4072,450,0 chrII 213466 . A G 4939.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.5806;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.19;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4939,552,0 chrII 213710 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.2355;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.75;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4915,537,0 chrII 213728 . T G 4101.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.03;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4101,459,0 chrII 213883 . G A 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=141;Dels=0.00;FS=4.502;HaplotypeScore=9.1595;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.700;QD=20.68;ReadPosRankSum=1.142;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2949,330,0 chrII 214378 . A G 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.928;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.430;QD=23.91;ReadPosRankSum=1.705;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3070,342,0 chrII 214467 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3048,333,0 chrII 214711 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.82;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:3010,330,0 chrII 214744 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.18;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3384,378,0 chrII 214810 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.30;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3524,384,0 chrII 215068 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.86;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3316,357,0 chrII 215181 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4088,441,0 chrII 215962 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.0225;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.48;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3583,408,0 chrII 215989 . G A 4586.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.38;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4586,504,0 chrII 216051 . C T 5357.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.5600;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.51;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5357,600,0 chrII 216250 . G A 5557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.412;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=20.9026;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.612;QD=23.95;ReadPosRankSum=1.162;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5557,609,0 chrII 216513 . G A 4847.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.0146;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.89;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4847,555,0 chrII 216541 . A C 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=3.010;HaplotypeScore=10.1566;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.638;QD=20.90;ReadPosRankSum=1.669;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:4640,531,0 chrII 216631 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.42;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4263,474,0 chrII 216794 . T C 7210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=19.3746;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.388;QD=22.53;ReadPosRankSum=2.434;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,317:320:99:7210,837,0 chrII 216902 . C T 8207.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=34.0861;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.24;SB=-4.116e+03 GT:AD:DP:GQ:PL 1/1:0,368:369:99:8207,909,0 chrII 216962 . G C 7957.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=19.8056;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.72;SB=-4.543e+03 GT:AD:DP:GQ:PL 1/1:0,378:384:99:7957,906,0 chrII 217015 . G C 9162.01 filter AC=2;AF=1.00;AN=2;DP=423;Dels=0.00;FS=0.000;HaplotypeScore=24.7470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-4.292e+03 GT:AD:DP:GQ:PL 1/1:0,416:423:99:9162,1035,0 chrII 217070 . C T 7255.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=18.7733;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.39;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:7255,781,0 chrII 217109 . T C 5897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=280;Dels=0.00;FS=8.997;HaplotypeScore=16.6536;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.858;QD=21.06;ReadPosRankSum=2.308;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:2,276:280:99:5897,660,0 chrII 217676 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4127;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.43;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3386,366,0 chrII 217694 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.92;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2909,333,0 chrII 218039 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=2.762;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.011;QD=23.16;ReadPosRankSum=2.386;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2720,300,0 chrII 218315 . T C 3215 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.30;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3248,369,0 chrII 218557 . C T 3203 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3236,357,0 chrII 218624 . A G 3197 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3230,363,0 chrII 218666 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.3173;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3808,423,0 chrII 218741 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.20;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3875,441,0 chrII 219119 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1881,204,0 chrII 219197 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.41;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2117,237,0 chrII 219215 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.02;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2345,255,0 chrII 219381 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.71;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2440,267,0 chrII 220055 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.52;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4160,450,0 chrII 220122 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.75;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3208,363,0 chrII 220136 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.34;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3478,372,0 chrII 220331 . C T 5720.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.83;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5720,645,0 chrII 220451 . T G 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=197;Dels=0.00;FS=7.106;HaplotypeScore=7.0455;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.876;QD=21.86;ReadPosRankSum=2.322;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,190:197:99:4306,498,0 chrII 220496 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.96;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3730,417,0 chrII 220618 . G T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.02;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4005,438,0 chrII 221044 . A G 27.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.284;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=3;MQRankSum=1.141;QD=0.36;ReadPosRankSum=6.362;SB=1.24 GT:AD:DP:GQ:PL 1/1:29,49:78:6:59,6,0 chrII 221053 . C A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=4;QD=0.26;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,76:80:6:52,6,0 chrII 221060 . G A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=5;QD=0.29;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:5,76:81:6:55,6,0 chrII 221065 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=7;QD=0.31;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:7,69:76:6:55,6,0 chrII 221066 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=7;QD=0.30;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:7,69:76:6:54,6,0 chrII 221072 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=7;QD=0.28;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:7,67:74:6:52,6,0 chrII 221075 . G T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=7;QD=0.37;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:7,62:69:6:57,6,0 chrII 221079 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=8;QD=0.31;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:8,49:57:6:49,6,0 chrII 221080 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.253;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=9;MQRankSum=-2.333;QD=0.34;ReadPosRankSum=0.737;SB=1.24 GT:AD:DP:GQ:PL 1/1:30,28:58:6:51,6,0 chrII 221084 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=9;QD=0.47;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:9,42:51:6:55,6,0 chrII 221085 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=9;QD=0.43;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:9,42:51:6:53,6,0 chrII 221087 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=9;QD=0.41;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:8,43:51:6:52,6,0 chrII 222032 . C A 61.51 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.38;MQ0=31;QD=1.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:12:94,12,0 chrII 222237 . C A 189.01 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=10.40;MQ0=36;QD=2.66;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,71:71:27:222,27,0 chrII 226882 . G A 81.27 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.16;MQ0=13;MQRankSum=0.742;QD=4.06;ReadPosRankSum=-0.742;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,7:20:9:111,0,9 chrII 226883 . T C 80.27 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.34;MQ0=12;MQRankSum=-0.572;QD=4.01;ReadPosRankSum=0.000;SB=0.242 GT:AD:DP:GQ:PL 0/1:14,6:20:9:110,0,9 chrII 226898 . A T 189.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=11;MQRankSum=-0.217;QD=7.00;ReadPosRankSum=1.302;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:12,15:27:24:222,24,0 chrII 226907 . C T 239 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=14.4976;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=11;QD=7.24;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:10,22:33:30:272,30,0 chrII 226910 . C A 278 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=14.4976;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=9;QD=8.42;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:7,24:33:33:311,33,0 chrII 226936 . C A 291 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=2;QD=9.09;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:1,31:32:36:324,36,0 chrII 226941 . C A 289 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.63;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:36:322,36,0 chrII 226979 . T C 154.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=-2.396;QD=3.42;ReadPosRankSum=2.010;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:2,43:45:21:187,21,0 chrII 227049 . G A 1307 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=17.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1340,147,0 chrII 227057 . T G 1433 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.203;QD=18.14;ReadPosRankSum=2.388;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1466,162,0 chrII 227201 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=23.37;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2908,318,0 chrII 227328 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.64;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3157,357,0 chrII 227387 . A T 2950 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.05;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2983,324,0 chrII 227531 . A C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=3.964;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.151;QD=22.73;ReadPosRankSum=1.707;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3170,366,0 chrII 227716 . G A 4037.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.4241;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.92;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4037,435,0 chrII 227881 . T C 2629 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.07;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2662,303,0 chrII 228106 . T C 2713 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2746,312,0 chrII 228232 . A G 3161 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.42;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3194,360,0 chrII 228251 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9608;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.021;QD=22.36;ReadPosRankSum=1.663;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3398,381,0 chrII 228645 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.72;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3073,330,0 chrII 228847 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1766,195,0 chrII 229294 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.4753;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.69;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2675,291,0 chrII 229968 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4257;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.19;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3664,396,0 chrII 230037 . A T 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.292;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.158;QD=22.90;ReadPosRankSum=1.653;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4008,441,0 chrII 231704 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.5289;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.25;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3893,441,0 chrII 231837 . A G 5378.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.8340;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.59;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5378,600,0 chrII 231893 . G C 5343.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5343,597,0 chrII 232081 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.74;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5199,570,0 chrII 232528 . C A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5870;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3541,396,0 chrII 232618 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3243,366,0 chrII 232792 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.180;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.033;QD=22.75;ReadPosRankSum=-1.710;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3571,362,0 chrII 233383 . T G 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=3.094;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.165;QD=24.51;ReadPosRankSum=1.688;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3897,432,0 chrII 233587 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.62;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4185,453,0 chrII 234280 . T C 4652.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.54;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4652,516,0 chrII 234991 . T A 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.367;QD=24.84;ReadPosRankSum=1.573;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3776,417,0 chrII 235113 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.45;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2502,270,0 chrII 235877 . A C 3109 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=147;Dels=0.00;FS=10.746;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-0.610;QD=21.15;ReadPosRankSum=2.952;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3142,372,0 chrII 235881 . A C 2986 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=22.97;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3019,336,0 chrII 235882 . C T 3035 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=23.17;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3068,339,0 chrII 236256 . T A 2830 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=16.8841;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=18.50;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2863,309,0 chrII 236554 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.32;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1689,189,0 chrII 237151 . A G 2451 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.80;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2484,294,0 chrII 237189 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.57;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3050,351,0 chrII 237444 . C T 5051.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.60;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5051,558,0 chrII 237498 . G T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.71;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3936,420,0 chrII 237660 . T C 2632 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.2926;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2665,303,0 chrII 237729 . A G 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.261;QD=22.17;ReadPosRankSum=1.631;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2339,264,0 chrII 237971 . A T 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=5.658;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.506;QD=24.89;ReadPosRankSum=1.657;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2323,255,0 chrII 238040 . T C 1427 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.62;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1460,162,0 chrII 238080 . G C 1412 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.61;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1445,168,0 chrII 238131 . A T 1482 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-1.368;QD=19.50;ReadPosRankSum=1.687;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1515,171,0 chrII 238137 . T C 1534 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1567,177,0 chrII 238224 . T A 228 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.29;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:261,30,0 chrII 238239 . G A 79.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.25;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:112,12,0 chrII 238259 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrII 238275 . T A 68.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=0.736;QD=11.42;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:12:101,12,0 chrII 238287 . A C 104.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=9.48;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,9:11:15:137,15,0 chrII 238333 . C T 608 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=16.89;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:36:69:641,69,0 chrII 238346 . T G 947 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;MQRankSum=1.525;QD=18.94;ReadPosRankSum=1.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,49:50:99:980,108,0 chrII 238452 . A G 2505 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.56;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2538,288,0 chrII 238608 . A C 3431.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-0.305;QD=20.79;ReadPosRankSum=2.301;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3431,390,0 chrII 238609 . C A 3525.01 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.11;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3525,390,0 chrII 238611 . C T 3522.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.84;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3522,399,0 chrII 238785 . T G 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=4.702;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.419;QD=18.87;ReadPosRankSum=1.592;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2410,276,0 chrII 238786 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=126;Dels=0.00;FS=2.595;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.637;QD=19.00;ReadPosRankSum=2.944;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2427,276,0 chrII 238829 . A T 2632 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.67;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2665,285,0 chrII 238875 . C A 2747 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.52;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2780,303,0 chrII 238944 . T A 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=2.773;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.154;QD=22.32;ReadPosRankSum=2.356;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2957,321,0 chrII 239223 . C A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.52;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3787,414,0 chrII 239528 . A C 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=196;Dels=0.00;FS=3.771;HaplotypeScore=9.4762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.032;QD=22.06;ReadPosRankSum=1.660;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:4324,495,0 chrII 239597 . C T 6369.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.59;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6369,696,0 chrII 239775 . C T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.10;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4940,526,0 chrII 239837 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.7574;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.29;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3896,432,0 chrII 239951 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.017;QD=22.32;ReadPosRankSum=1.710;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3459,387,0 chrII 239988 . A G 2390 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8199;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.53;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2423,276,0 chrII 239994 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.73;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2420,270,0 chrII 240048 . C A 2068 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.63;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2101,228,0 chrII 241383 . G A 69.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.72;SB=-4.375e+01 GT:AD:DP:GQ:PL 1/1:0,7:9:12:102,12,0 chrII 241422 . T C 716 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:84:749,84,0 chrII 241482 . C T 1265 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1298,141,0 chrII 242023 . G A 3938.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.6137;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3938,432,0 chrII 242434 . G A 6203.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=8.8318;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.69;SB=-3.763e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:6203,678,0 chrII 242773 . G C 3194 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=17.5574;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.03;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3227,366,0 chrII 242880 . C A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.94;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3488,378,0 chrII 243486 . G A 5058.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.43;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5058,555,0 chrII 243495 . A G 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.077;QD=20.59;ReadPosRankSum=1.686;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4653,537,0 chrII 244064 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.231;QD=23.76;ReadPosRankSum=1.709;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3611,399,0 chrII 244090 . A C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.310;QD=22.11;ReadPosRankSum=1.704;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2753,318,0 chrII 244779 . A G 2900 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.83;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2933,324,0 chrII 245034 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3341,360,0 chrII 245073 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.79;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3258,366,0 chrII 245200 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2755,300,0 chrII 245305 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5512;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.31;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1758,192,0 chrII 245747 . T C 1882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5829;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=1.159;QD=15.43;ReadPosRankSum=1.966;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:1915,222,0 chrII 245748 . T G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5829;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=2.204;QD=15.21;ReadPosRankSum=1.999;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:1889,219,0 chrII 245877 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.57;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4153,447,0 chrII 246027 . T G 6627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=282;Dels=0.00;FS=2.649;HaplotypeScore=14.4759;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.074;QD=23.50;ReadPosRankSum=2.336;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:2,278:282:99:6627,738,0 chrII 246313 . C T 5637.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=11.4657;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.28;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:1,276:278:99:5637,624,0 chrII 246331 . A G 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=238;Dels=0.00;FS=2.776;HaplotypeScore=8.0843;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.232;QD=19.04;ReadPosRankSum=2.398;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:4532,522,0 chrII 246973 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=172;Dels=0.00;FS=13.698;HaplotypeScore=14.5342;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.025;QD=19.59;ReadPosRankSum=3.409;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:3370,381,0 chrII 247040 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9430;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.53;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3704,405,0 chrII 247069 . T A 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.648;QD=24.64;ReadPosRankSum=1.685;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3622,402,0 chrII 247234 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=181;Dels=0.00;FS=5.949;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.283;QD=21.41;ReadPosRankSum=2.917;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3875,447,0 chrII 247399 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=164;Dels=0.00;FS=6.658;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.394;QD=21.36;ReadPosRankSum=2.389;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3503,405,0 chrII 247522 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.26;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2777,306,0 chrII 247531 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.29;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2695,300,0 chrII 247789 . A G 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=3.516;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.351;QD=23.20;ReadPosRankSum=1.696;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4432,495,0 chrII 247894 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=3.120;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.508;QD=21.02;ReadPosRankSum=1.715;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4246,480,0 chrII 248159 . T A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.64;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4927,532,0 chrII 248659 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.97;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2355,255,0 chrII 248671 . C G 2120 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.55;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2153,240,0 chrII 248728 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=108;Dels=0.00;FS=3.042;HaplotypeScore=8.9241;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.957;QD=20.44;ReadPosRankSum=2.403;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,103:108:99:2241,252,0 chrII 248918 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.5574;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.16;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3575,393,0 chrII 248980 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3967,429,0 chrII 250316 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3711,402,0 chrII 250537 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.78;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3758,423,0 chrII 250789 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.61;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3754,417,0 chrII 251134 . G T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.29;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3967,426,0 chrII 251548 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.08;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5101,555,0 chrII 251742 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.07;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3211,360,0 chrII 251790 . C T 2502 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=22.95;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2535,279,0 chrII 251800 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=21.19;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2534,276,0 chrII 251820 . G C 2480 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=21.02;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2513,285,0 chrII 251887 . A G 3194 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.49;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3227,363,0 chrII 252013 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=23.87;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3390,366,0 chrII 252027 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=20.69;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2847,327,0 chrII 252036 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=19.64;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2625,294,0 chrII 252044 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.59;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2677,294,0 chrII 252103 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.31;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2825,312,0 chrII 252161 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.27;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3594,405,0 chrII 252244 . A G 1902 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=15.10;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1935,225,0 chrII 252271 . T C 1408 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=100.5169;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=12.57;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1441,168,0 chrII 252273 . G C 1514 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=99.5503;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=13.17;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1547,174,0 chrII 252279 . G A 1632 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=13.06;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1665,183,0 chrII 252423 . C G 2693 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=123.7708;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=18.45;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2726,303,0 chrII 252499 . A T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=21.93;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3684,408,0 chrII 252589 . T C 5581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.851;QD=24.92;ReadPosRankSum=1.717;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5581,618,0 chrII 253219 . G A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4074,444,0 chrII 254006 . T A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.40;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3884,432,0 chrII 254436 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=9.5197;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.01;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3991,465,0 chrII 254815 . C T 2679 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.14;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2712,294,0 chrII 254834 . A G 2597 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.13;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2630,291,0 chrII 254899 . T A 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=6.511;HaplotypeScore=11.7263;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.497;QD=19.18;ReadPosRankSum=1.665;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2009,222,0 chrII 255127 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1169,132,0 chrII 255173 . C G 1726 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1759,198,0 chrII 255469 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.75;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4035,435,0 chrII 255688 . T A 2706 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.75;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2739,306,0 chrII 255743 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.94;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2406,270,0 chrII 256651 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.19;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1626,189,0 chrII 256767 . A C 2030 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.07;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2063,234,0 chrII 256925 . T C 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.130;QD=23.39;ReadPosRankSum=1.657;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1109,126,0 chrII 256941 . A T 1001 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.25;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1034,111,0 chrII 256942 . A G 931 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.90;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:964,111,0 chrII 257565 . T C 7275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=328;Dels=0.00;FS=9.437;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.475;QD=22.18;ReadPosRankSum=2.893;SB=-3.963e+03 GT:AD:DP:GQ:PL 1/1:3,324:328:99:7275,804,0 chrII 258064 . C A 458 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=128.1697;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=2.78;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:54:491,54,0 chrII 258067 . G A 180.03 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=127.1764;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=1.19;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:24:213,24,0 chrII 258071 . T G 2423 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=8.0307;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=-0.382;QD=15.63;ReadPosRankSum=1.710;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2456,279,0 chrII 258153 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=196;Dels=0.00;FS=2.931;HaplotypeScore=14.5206;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.695;QD=22.57;ReadPosRankSum=2.425;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4423,498,0 chrII 258313 . G C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.89;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3280,366,0 chrII 258409 . C A 4342.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.50;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4342,486,0 chrII 258456 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.83;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3607,387,0 chrII 258511 . T C 3357.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.556;QD=19.63;ReadPosRankSum=2.392;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3357,381,0 chrII 258513 . A G 3416.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=5.677;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-1.263;QD=20.09;ReadPosRankSum=1.712;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3416,384,0 chrII 258516 . C G 3327.01 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=17.89;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3327,396,0 chrII 258593 . A G 2606 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.45;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2639,294,0 chrII 258617 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.28;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2310,249,0 chrII 258851 . T C 905 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=19.67;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:938,105,0 chrII 258852 . G A 929 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=20.64;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:962,105,0 chrII 258892 . C T 1018 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.36;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1051,111,0 chrII 258896 . A G 998 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=19.19;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1031,117,0 chrII 258961 . A G 537 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.914;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;MQRankSum=-2.183;QD=14.51;ReadPosRankSum=2.317;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:2,35:37:63:570,63,0 chrII 258965 . T A 519 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.30;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:60:552,60,0 chrII 258971 . C T 405 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=15.00;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:48:438,48,0 chrII 258973 . A G 376 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;MQRankSum=1.348;QD=13.93;ReadPosRankSum=1.605;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:1,26:27:45:409,45,0 chrII 258984 . A G 271 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=7.8980;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=0.083;QD=12.90;ReadPosRankSum=1.569;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:1,20:21:36:304,36,0 chrII 259158 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=24.79;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2264,252,0 chrII 259235 . T C 3163 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.15;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3196,357,0 chrII 259417 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=23.65;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3359,381,0 chrII 259419 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.802;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-0.171;QD=23.72;ReadPosRankSum=1.683;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3415,387,0 chrII 259438 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-1.576;QD=21.20;ReadPosRankSum=1.706;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2853,327,0 chrII 259540 . G C 2422 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=37.38;MQ0=0;QD=22.43;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2455,270,0 chrII 259557 . G T 2419 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=23.72;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2452,264,0 chrII 265394 . T G 196 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.80;MQ0=15;QD=7.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,24:27:30:229,30,0 chrII 265440 . A G 194 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.202;DP=28;Dels=0.00;FS=30.004;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.80;MQ0=14;MQRankSum=2.758;QD=6.93;ReadPosRankSum=-2.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,16:28:30:227,30,0 chrII 265446 . T C 192 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.899;DP=25;Dels=0.00;FS=30.004;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.54;MQ0=11;MQRankSum=2.758;QD=7.68;ReadPosRankSum=-2.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,13:25:30:225,30,0 chrII 265449 . C T 190 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.919;DP=24;Dels=0.00;FS=30.004;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.82;MQ0=10;MQRankSum=2.758;QD=7.92;ReadPosRankSum=-2.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,12:24:30:223,30,0 chrII 265504 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=0.42;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,42:42:6:49,6,0 chrII 265515 . G A 105.26 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=2.11;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,50:50:15:138,15,0 chrII 265538 . C A 212.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.85;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,55:55:27:245,27,0 chrII 265539 . A G 213.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.87;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,55:55:27:246,27,0 chrII 265548 . C T 241 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.08;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,59:59:30:274,30,0 chrII 265561 . C G 266 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.045;DP=63;Dels=0.00;FS=95.880;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;MQRankSum=4.531;QD=4.22;ReadPosRankSum=4.036;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:8,55:63:33:299,33,0 chrII 265565 . C T 272 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=4.32;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:33:305,33,0 chrII 265571 . G A 259 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.852;DP=59;Dels=0.00;FS=93.459;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;MQRankSum=4.506;QD=4.39;ReadPosRankSum=4.151;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:8,51:59:33:292,33,0 chrII 265584 . G A 416 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=7.70;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:48:449,48,0 chrII 265599 . C T 615 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=9.32;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:72:648,72,0 chrII 265613 . T C 796 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=10.21;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:93:829,93,0 chrII 265620 . T C 879 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;MQRankSum=-2.754;QD=10.10;ReadPosRankSum=2.848;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:3,83:87:99:912,108,0 chrII 265622 . A T 989 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0032;MLEAC=2;MLEAF=1.00;MQ=35.41;MQ0=0;QD=10.99;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1022,114,0 chrII 265684 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=141;Dels=0.00;FS=4.075;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=0.025;QD=19.16;ReadPosRankSum=1.707;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,137:141:99:2734,312,0 chrII 265770 . T A 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=163;Dels=0.00;FS=2.861;HaplotypeScore=12.8793;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.053;QD=22.10;ReadPosRankSum=2.223;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3603,405,0 chrII 265831 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=24.34;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3846,435,0 chrII 266338 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.83;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2075,231,0 chrII 266339 . T A 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.286;QD=20.26;ReadPosRankSum=1.698;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2120,228,0 chrII 266358 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.14;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2137,231,0 chrII 266529 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.21;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2934,318,0 chrII 267213 . G A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.32;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3727,417,0 chrII 267399 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=21.33;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2059,225,0 chrII 267446 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.74;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1956,219,0 chrII 267510 . C T 2121 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2154,237,0 chrII 268100 . G A 4987.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.77;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4987,564,0 chrII 268167 . C T 5436.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.9087;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.38;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5436,588,0 chrII 268270 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=213;Dels=0.00;FS=5.988;HaplotypeScore=11.2686;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.825;QD=21.82;ReadPosRankSum=2.957;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4648,522,0 chrII 268319 . A G 5420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=247;Dels=0.00;FS=2.967;HaplotypeScore=13.0742;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.606;QD=21.94;ReadPosRankSum=2.429;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:2,243:247:99:5420,609,0 chrII 268398 . G C 4478.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.7527;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=20.54;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,213:218:99:4478,507,0 chrII 268490 . C T 5473.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5473,615,0 chrII 268644 . G T 4866.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.06;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4866,528,0 chrII 268895 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9413;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=19.39;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3335,357,0 chrII 268913 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=15.95;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2664,306,0 chrII 268925 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=13.22;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2188,240,0 chrII 268930 . A G 2122 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;QD=13.78;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2155,243,0 chrII 268949 . T C 1912 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=11.80;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:1945,225,0 chrII 269013 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=12.07;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:2665,300,0 chrII 269025 . G T 2558 SnpCluster AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.06;MQ0=0;QD=11.73;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:2591,282,0 chrII 269026 . T C 2408 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=221;Dels=0.00;FS=2.991;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;MQRankSum=-1.483;QD=10.90;ReadPosRankSum=2.361;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:2441,276,0 chrII 269029 . C A 2454 SnpCluster AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=10.62;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:2487,270,0 chrII 269036 . C A 2454 SnpCluster AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.7924;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=11.10;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:2487,267,0 chrII 269210 . C G 5206.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.3451;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=21.25;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5206,612,0 chrII 269402 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.27;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4275,480,0 chrII 269653 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.8249;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.98;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2171,240,0 chrII 269904 . T C 5953.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=7.3252;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.05;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5953,681,0 chrII 269983 . A G 4395.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=219;Dels=0.00;FS=5.103;HaplotypeScore=4.4667;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=-2.067;QD=20.07;ReadPosRankSum=3.421;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:4,215:219:99:4395,498,0 chrII 269986 . G A 4192.01 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=21.07;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4192,462,0 chrII 269987 . C T 4136.01 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=20.48;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4136,462,0 chrII 270191 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.78;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4465,486,0 chrII 270207 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=218;Dels=0.00;FS=4.219;HaplotypeScore=10.2045;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-0.696;QD=21.43;ReadPosRankSum=1.716;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,213:218:99:4672,519,0 chrII 271598 . C T 4774.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.3626;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4774,537,0 chrII 271912 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.69;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2806,306,0 chrII 272267 . C T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.38;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4349,468,0 chrII 272699 . T C 8703.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=383;Dels=0.00;FS=4.453;HaplotypeScore=27.0988;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.045;QD=22.72;ReadPosRankSum=1.687;SB=-3.432e+03 GT:AD:DP:GQ:PL 1/1:1,381:383:99:8703,972,0 chrII 273736 . A G 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.160;QD=20.06;ReadPosRankSum=2.415;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2921,330,0 chrII 273772 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=5.290;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.488;QD=20.30;ReadPosRankSum=1.708;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2915,327,0 chrII 273781 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.58;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2832,321,0 chrII 273857 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.35;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2088,240,0 chrII 273866 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.75;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2233,249,0 chrII 273923 . A G 1934 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.73;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1967,228,0 chrII 274076 . G C 1773 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=21.62;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1806,198,0 chrII 274152 . T C 1177 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=20.65;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1210,138,0 chrII 274155 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=20.22;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1206,132,0 chrII 274206 . T G 456 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=13.41;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:489,57,0 chrII 274209 . C T 453 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.9459;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=14.16;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:486,54,0 chrII 274212 . A C 413 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.9124;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;MQRankSum=-0.578;QD=12.52;ReadPosRankSum=1.628;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:51:446,51,0 chrII 274298 . T A 690 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=17.25;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:723,78,0 chrII 274303 . T A 666 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=57.9905;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=17.08;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:699,75,0 chrII 274372 . G A 625 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=14.20;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:658,72,0 chrII 274375 . A G 621 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=14.11;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:654,72,0 chrII 274439 . T C 1732 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.68;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1765,198,0 chrII 274460 . T C 2031 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.82;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2064,231,0 chrII 274553 . A G 2072 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.82;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2105,240,0 chrII 274625 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.45;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3300,372,0 chrII 274973 . A G 4154.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.29;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4154,453,0 chrII 275024 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.217;QD=22.06;ReadPosRankSum=1.692;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3861,432,0 chrII 275372 . T C 4139.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.74;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4139,474,0 chrII 275968 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.289;QD=23.60;ReadPosRankSum=1.680;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3148,354,0 chrII 275994 . C T 2897 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.81;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2930,321,0 chrII 276052 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.217;QD=22.41;ReadPosRankSum=1.703;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2767,309,0 chrII 276361 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3293,387,0 chrII 276412 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=163;Dels=0.00;FS=2.990;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.626;QD=20.42;ReadPosRankSum=2.374;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3329,393,0 chrII 276526 . C T 5041.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.24;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5041,541,0 chrII 276555 . A C 4270.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.24;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4270,477,0 chrII 276676 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.8451;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.73;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3999,462,0 chrII 276763 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=20.6288;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.24;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3334,372,0 chrII 276799 . C G 3200 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.88;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,153:161:99:3233,375,0 chrII 277566 . G T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4633,504,0 chrII 277803 . T C 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=224;Dels=0.00;FS=3.571;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.499;QD=22.72;ReadPosRankSum=1.717;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5090,570,0 chrII 277874 . G T 5793.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5793,622,0 chrII 278429 . T A 3215 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3248,351,0 chrII 278630 . C G 2836 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8798;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.69;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2869,330,0 chrII 278769 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=4.322;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.438;QD=23.05;ReadPosRankSum=1.711;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3803,432,0 chrII 278797 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.2273;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.28;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3063,345,0 chrII 278884 . G C 1593 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.42;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1626,186,0 chrII 278927 . A G 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=0.566;QD=21.63;ReadPosRankSum=1.632;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2283,264,0 chrII 279383 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.74;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4320,477,0 chrII 279623 . T C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.500;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.413;QD=21.24;ReadPosRankSum=1.714;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4227,486,0 chrII 279910 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.04;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3664,408,0 chrII 280109 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=197;Dels=0.00;FS=3.549;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.097;QD=21.91;ReadPosRankSum=1.714;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4316,495,0 chrII 280261 . C A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.24;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3825,420,0 chrII 280277 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2160;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.04;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3767,411,0 chrII 280550 . A T 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.947;QD=21.67;ReadPosRankSum=1.712;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3728,411,0 chrII 280562 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.68;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3599,414,0 chrII 280680 . A G 3118 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.93;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3151,354,0 chrII 280684 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.41;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3094,339,0 chrII 280796 . A G 3006 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.45;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3039,351,0 chrII 280810 . A C 2931 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.79;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2964,336,0 chrII 280862 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.33;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3395,381,0 chrII 281251 . A G 1727 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=4.053;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-0.331;QD=19.40;ReadPosRankSum=1.654;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1760,198,0 chrII 281257 . C T 1643 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-1.732;QD=17.67;ReadPosRankSum=1.434;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1676,183,0 chrII 281258 . T C 1668 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-1.397;QD=17.74;ReadPosRankSum=1.695;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1701,195,0 chrII 282015 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.0686;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.31;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4225,474,0 chrII 282024 . C T 4452.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.14;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4452,498,0 chrII 282099 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.698;DP=185;Dels=0.00;FS=20.124;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.518;QD=20.97;ReadPosRankSum=4.774;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:8,174:185:99:3880,438,0 chrII 282128 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=6.416;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.243;QD=23.39;ReadPosRankSum=2.421;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3953,438,0 chrII 282495 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2471,276,0 chrII 282657 . C A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.56;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3487,390,0 chrII 283092 . A T 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=3.038;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.375;QD=21.70;ReadPosRankSum=2.385;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3277,363,0 chrII 283424 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3110,339,0 chrII 283573 . C T 3662.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3662,399,0 chrII 283654 . C G 4527.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4527,510,0 chrII 283729 . G C 4728.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.2658;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.73;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4728,531,0 chrII 283800 . C T 5823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.1117;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.082;QD=23.77;ReadPosRankSum=-0.884;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5823,634,0 chrII 283860 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.7272;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.68;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4168,465,0 chrII 283935 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.41;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4033,456,0 chrII 284107 . T A 2880 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.72;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2913,327,0 chrII 284108 . C T 2938 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.29;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2971,327,0 chrII 284437 . G T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.42;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3468,390,0 chrII 284893 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3362,378,0 chrII 285666 . T C 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=6.196;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.654;QD=22.21;ReadPosRankSum=2.313;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2831,318,0 chrII 285685 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7985;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.47;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2976,330,0 chrII 285772 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.499;QD=22.81;ReadPosRankSum=1.693;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4061,465,0 chrII 285829 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.63;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3417,390,0 chrII 286002 . G A 4584.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=21.9914;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.81;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4584,495,0 chrII 286708 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.84;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4019,447,0 chrII 286762 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4139,462,0 chrII 286855 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=24.54;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3338,354,0 chrII 286879 . A G 2766 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.61;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2799,318,0 chrII 286894 . A G 3054 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.36;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3087,351,0 chrII 287110 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.83;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3728,414,0 chrII 287113 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.68;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3837,417,0 chrII 287260 . A C 4673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=228;Dels=0.00;FS=2.966;HaplotypeScore=12.5707;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.072;QD=20.50;ReadPosRankSum=2.383;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:2,221:228:99:4673,525,0 chrII 287483 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.98;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4177,462,0 chrII 287551 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=182;Dels=0.00;FS=2.964;HaplotypeScore=14.3788;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.577;QD=20.43;ReadPosRankSum=2.422;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3718,429,0 chrII 287818 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.913;QD=22.17;ReadPosRankSum=1.669;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3680,420,0 chrII 287997 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=101;Dels=0.00;FS=2.900;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.231;QD=20.50;ReadPosRankSum=2.401;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2103,237,0 chrII 288039 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.7676;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.71;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3021,336,0 chrII 288081 . A G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.8637;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.157;QD=23.45;ReadPosRankSum=1.706;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3152,363,0 chrII 288119 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.14;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2800,321,0 chrII 288197 . T C 4781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.451;QD=22.34;ReadPosRankSum=2.404;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4781,546,0 chrII 288303 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=6.097;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.754;QD=17.72;ReadPosRankSum=2.923;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2567,291,0 chrII 288304 . C G 2524 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=17.53;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2557,294,0 chrII 288339 . A C 4025.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.8942;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.08;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4025,459,0 chrII 288484 . T C 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=3.282;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=0.210;QD=21.50;ReadPosRankSum=1.706;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2893,327,0 chrII 288498 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=20.91;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2626,282,0 chrII 288671 . T A 2703 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.34;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2736,309,0 chrII 288717 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=23.03;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2750,306,0 chrII 288768 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=9.9112;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=14.77;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:1879,216,0 chrII 288773 . T A 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;MQRankSum=-0.272;QD=13.32;ReadPosRankSum=2.379;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:1898,213,0 chrII 288780 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=12.91;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1995,234,0 chrII 288800 . T C 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;MQRankSum=-1.603;QD=11.29;ReadPosRankSum=1.695;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,187:188:99:2155,246,0 chrII 288809 . A C 2180 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.1953;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=10.74;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,199:203:99:2213,261,0 chrII 288880 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.32;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3203,345,0 chrII 288893 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.82;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3446,369,0 chrII 288943 . A G 3979.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.74;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3979,456,0 chrII 288980 . T C 4920.01 SnpCluster AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=20.76;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4920,575,0 chrII 288986 . T C 4944.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=247;Dels=0.00;FS=3.848;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;MQRankSum=-0.403;QD=20.02;ReadPosRankSum=1.690;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:4944,570,0 chrII 288990 . C A 4740.01 SnpCluster AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=19.59;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4740,546,0 chrII 289364 . A C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.327;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.415;QD=24.68;ReadPosRankSum=1.683;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3505,393,0 chrII 289409 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.07;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2902,327,0 chrII 289530 . G C 3928.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.81;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3928,432,0 chrII 289601 . C A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.1367;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.80;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3547,384,0 chrII 289642 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.190;QD=23.69;ReadPosRankSum=2.176;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3387,375,0 chrII 289723 . G A 3904.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.71;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3904,423,0 chrII 289906 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.71;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3410,369,0 chrII 289966 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.708;QD=21.92;ReadPosRankSum=1.708;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3168,360,0 chrII 290536 . C A 2023 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2056,222,0 chrII 290619 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.54;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2622,288,0 chrII 291653 . A G 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=207;Dels=0.00;FS=5.385;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.005;QD=20.58;ReadPosRankSum=2.966;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:3,202:207:99:4261,486,0 chrII 292193 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.22;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3529,375,0 chrII 292212 . A T 3183 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.51;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3216,348,0 chrII 292254 . A G 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.985;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;MQRankSum=-0.933;QD=12.72;ReadPosRankSum=1.699;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1356,156,0 chrII 292257 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=12.49;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1319,144,0 chrII 292269 . C T 941 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=10.34;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:974,105,0 chrII 292286 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=10.96;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1096,126,0 chrII 292290 . T C 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.634;DP=102;Dels=0.00;FS=2.522;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;MQRankSum=1.268;QD=11.82;ReadPosRankSum=2.931;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:1239,138,0 chrII 292541 . A T 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=1.431;QD=22.49;ReadPosRankSum=1.711;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3621,393,0 chrII 292546 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=168;Dels=0.00;FS=13.063;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-0.775;QD=20.78;ReadPosRankSum=3.355;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:4,164:168:99:3491,393,0 chrII 292578 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=23.5204;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=19.97;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3149,342,0 chrII 292676 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=17.3970;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=19.03;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3520,381,0 chrII 292680 . T A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=15.2061;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=18.51;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3388,366,0 chrII 292748 . C G 2741 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=16.82;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:2774,318,0 chrII 292752 . T C 2630 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=161;Dels=0.00;FS=6.029;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-2.113;QD=16.34;ReadPosRankSum=2.956;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:2663,303,0 chrII 292755 . A G 2574 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=167;Dels=0.00;FS=10.009;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=-1.223;QD=15.41;ReadPosRankSum=2.922;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:2607,303,0 chrII 292797 . T C 2974 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=18.82;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3007,342,0 chrII 292835 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.63;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3083,333,0 chrII 292860 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1948;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.82;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2968,336,0 chrII 292922 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.0176;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.122;QD=20.80;ReadPosRankSum=1.710;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3307,372,0 chrII 293020 . A C 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.168;QD=20.41;ReadPosRankSum=1.705;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2686,303,0 chrII 293057 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.66;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3038,330,0 chrII 293099 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.9998;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.20;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4083,435,0 chrII 293297 . G A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.44;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4588,516,0 chrII 293354 . A C 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=230;Dels=0.00;FS=3.286;HaplotypeScore=11.8511;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.106;QD=22.67;ReadPosRankSum=1.717;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:5215,588,0 chrII 293399 . T G 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=205;Dels=0.00;FS=6.042;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.784;QD=20.30;ReadPosRankSum=2.340;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4161,465,0 chrII 293405 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=189;Dels=0.00;FS=3.032;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.451;QD=19.40;ReadPosRankSum=2.371;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:3667,423,0 chrII 293501 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.046;QD=19.66;ReadPosRankSum=1.695;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3716,417,0 chrII 293504 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.30;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3837,423,0 chrII 293549 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=198;Dels=0.00;FS=5.174;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.705;QD=19.26;ReadPosRankSum=3.371;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:4,192:198:99:3813,444,0 chrII 293630 . A G 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=138;Dels=0.00;FS=2.849;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.099;QD=22.46;ReadPosRankSum=2.396;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3132,351,0 chrII 293761 . C G 3202 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.78;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3235,381,0 chrII 293954 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.25;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3808,408,0 chrII 294230 . C T 638 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.24;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:671,75,0 chrII 295028 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.60;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3917,429,0 chrII 295058 . G T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.53;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4258,465,0 chrII 295631 . G A 4559.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.4706;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.35;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4559,489,0 chrII 295710 . C G 4563.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.15;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4563,522,0 chrII 295912 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2691;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.24;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3420,399,0 chrII 296073 . G C 1648 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.40;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1681,186,0 chrII 296774 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.068;DP=148;Dels=0.00;FS=8.090;HaplotypeScore=8.1411;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.810;QD=20.39;ReadPosRankSum=3.352;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3051,345,0 chrII 296843 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.1084;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.39;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2886,312,0 chrII 297226 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.88;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4036,438,0 chrII 297515 . G A 5660.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.8151;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.58;SB=-3.254e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5660,612,0 chrII 297602 . G T 5894.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=16.2350;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.02;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5894,651,0 chrII 297966 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.54;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3878,423,0 chrII 298123 . G T 2840 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.52;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2873,315,0 chrII 298141 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.15;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2890,309,0 chrII 298189 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.92;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2882,321,0 chrII 298678 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.000;QD=21.53;ReadPosRankSum=1.692;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3789,426,0 chrII 298721 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.10;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3355,363,0 chrII 298732 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.32;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3272,363,0 chrII 298771 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.3024;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-1.145;QD=20.30;ReadPosRankSum=1.656;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3715,423,0 chrII 298966 . T C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.704;QD=20.66;ReadPosRankSum=1.651;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2678,303,0 chrII 298990 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.99;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2210,237,0 chrII 299034 . A G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.091;QD=21.98;ReadPosRankSum=1.700;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2407,273,0 chrII 299081 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8520;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.81;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3009,324,0 chrII 299174 . T C 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=130;Dels=0.00;FS=2.968;HaplotypeScore=8.9805;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.734;QD=20.61;ReadPosRankSum=2.412;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2712,312,0 chrII 299196 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=132;Dels=0.00;FS=5.872;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.419;QD=19.73;ReadPosRankSum=2.869;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:3,127:132:99:2638,297,0 chrII 299389 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=3.642;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.379;QD=23.21;ReadPosRankSum=1.696;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4480,495,0 chrII 299581 . T C 4434.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.84;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4434,507,0 chrII 299698 . T C 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=3.851;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.192;QD=22.27;ReadPosRankSum=1.716;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4833,540,0 chrII 299792 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.91;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3419,366,0 chrII 299803 . C A 3107 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.90;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3140,339,0 chrII 299901 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.23;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2076,237,0 chrII 300111 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=20.83;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2074,237,0 chrII 300612 . A G 1710.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.790;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=24.7489;MLEAC=1;MLEAF=0.500;MQ=19.70;MQ0=85;MQRankSum=-0.478;QD=5.38;ReadPosRankSum=-0.780;SB=-9.230e+02 GT:AD:DP:GQ:PL 0/1:149,169:318:99:1740,0,1852 chrII 301002 . T C 1299 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.86;MQ0=9;QD=14.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1332,153,0 chrII 301014 . T C 1240 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=9;QD=14.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1273,141,0 chrII 301044 . C T 887 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=22.57;MQ0=7;QD=13.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:920,99,0 chrII 301323 . G A 994 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=16.85;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1027,111,0 chrII 301332 . A T 1032 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=17.20;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1065,114,0 chrII 301399 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-0.882;QD=13.82;ReadPosRankSum=2.384;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1595,177,0 chrII 301406 . T A 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.409;QD=15.46;ReadPosRankSum=1.638;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1765,204,0 chrII 301455 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.55;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2598,288,0 chrII 301549 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=22.92;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4034,438,0 chrII 301568 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=173;Dels=0.00;FS=6.087;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-0.782;QD=20.23;ReadPosRankSum=2.900;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:3,168:173:99:3500,387,0 chrII 301569 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=0.326;QD=20.11;ReadPosRankSum=1.712;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3419,378,0 chrII 301803 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.414;QD=23.04;ReadPosRankSum=1.690;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3779,417,0 chrII 301834 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=23.07;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3830,414,0 chrII 301937 . T A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.51;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3343,375,0 chrII 301951 . A T 3122 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.14;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3155,345,0 chrII 301964 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=164;Dels=0.00;FS=2.646;HaplotypeScore=9.0088;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-2.285;QD=18.75;ReadPosRankSum=2.420;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3108,351,0 chrII 302062 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.47;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3999,441,0 chrII 302075 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=21.08;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3436,378,0 chrII 302077 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=21.85;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3562,381,0 chrII 302104 . A G 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.022;QD=20.80;ReadPosRankSum=1.667;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3348,381,0 chrII 302192 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.53;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3582,405,0 chrII 302245 . G C 2895 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.56;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2928,333,0 chrII 302260 . T A 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=155;Dels=0.00;FS=7.723;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.626;QD=20.26;ReadPosRankSum=2.291;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3174,345,0 chrII 302285 . T C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=-1.691;QD=17.84;ReadPosRankSum=1.671;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3065,351,0 chrII 302305 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.1740;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=17.96;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3413,378,0 chrII 302360 . G A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.9048;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.23;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3927,420,0 chrII 302473 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.576;QD=23.03;ReadPosRankSum=1.693;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4076,459,0 chrII 302626 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=17.26;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3418,378,0 chrII 302629 . A T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=16.82;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3331,369,0 chrII 302648 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=202;Dels=0.00;FS=3.017;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;MQRankSum=-0.942;QD=14.80;ReadPosRankSum=2.425;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:3022,348,0 chrII 302657 . A C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;MQRankSum=0.764;QD=13.97;ReadPosRankSum=1.698;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:2896,330,0 chrII 302699 . A G 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=7.012;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-1.635;QD=15.70;ReadPosRankSum=2.421;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:2733,303,0 chrII 302714 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.8397;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=18.94;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3523,381,0 chrII 302763 . A C 4435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=215;Dels=0.00;FS=10.261;HaplotypeScore=15.9585;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.227;QD=20.63;ReadPosRankSum=2.967;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:3,209:215:99:4435,516,0 chrII 302822 . C T 5137.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=23.04;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5137,558,0 chrII 302839 . T G 4393.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=19.88;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4393,510,0 chrII 302842 . C G 4253.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=19.78;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4253,489,0 chrII 302955 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2542;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.89;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3969,444,0 chrII 302972 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.91;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4097,465,0 chrII 303066 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=0.143;QD=21.44;ReadPosRankSum=1.706;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2928,327,0 chrII 303071 . T C 2753 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=20.86;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2786,312,0 chrII 303148 . G C 2999 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.38;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3032,348,0 chrII 303241 . C A 1694 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.72;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1727,189,0 chrII 303256 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=22.61;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1525,168,0 chrII 303262 . G A 1458 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=22.43;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1491,162,0 chrII 303287 . G T 1715 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.18;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1748,189,0 chrII 303343 . C G 2228 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.45;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2261,255,0 chrII 303395 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.41;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1960,213,0 chrII 303413 . A G 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=94;Dels=0.00;FS=7.983;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=0.067;QD=18.36;ReadPosRankSum=2.343;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:2,90:94:99:1759,204,0 chrII 303435 . T C 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-1.267;QD=17.83;ReadPosRankSum=2.401;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1852,207,0 chrII 303452 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.27;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2161,237,0 chrII 303528 . C G 1378 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=17.90;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1411,159,0 chrII 303537 . T G 1250 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=17.12;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1283,144,0 chrII 303540 . C T 1259 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=17.49;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1292,141,0 chrII 303744 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.20;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2009,222,0 chrII 303954 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.4941;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.30;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1795,195,0 chrII 304001 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.709;QD=24.16;ReadPosRankSum=1.699;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2594,297,0 chrII 304384 . G T 5383.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.3942;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.20;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:5383,594,0 chrII 305499 . G A 4333.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.43;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4333,471,0 chrII 305500 . A T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.48;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4324,471,0 chrII 305677 . T C 5601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=262;Dels=0.00;FS=6.070;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.602;QD=21.38;ReadPosRankSum=1.525;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:3,259:262:99:5601,632,0 chrII 305801 . T C 4928.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.30;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4928,546,0 chrII 305854 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.65;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4329,480,0 chrII 305881 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0472;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.617;QD=20.74;ReadPosRankSum=1.636;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3795,423,0 chrII 306242 . T G 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.076;QD=22.59;ReadPosRankSum=1.659;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2202,258,0 chrII 306376 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3072,330,0 chrII 306932 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.2628;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.08;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3188,345,0 chrII 306980 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=23.82;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3502,399,0 chrII 307275 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.41;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2401,267,0 chrII 307459 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=13.70;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:951,111,0 chrII 307594 . C A 2338 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=25.14;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2371,258,0 chrII 307613 . C A 1831 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=23.18;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1864,204,0 chrII 307713 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=21.69;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2679,300,0 chrII 307794 . T A 1933 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2187;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=19.72;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1966,222,0 chrII 307808 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=20.71;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1731,189,0 chrII 307810 . A G 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;MQRankSum=-0.929;QD=19.54;ReadPosRankSum=1.690;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1635,189,0 chrII 307854 . G A 1129 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=57.1818;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=13.94;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1162,132,0 chrII 307858 . A G 1014 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=56.5750;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;QD=13.17;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1047,123,0 chrII 307919 . C A 1851 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=14.93;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1884,204,0 chrII 307944 . T C 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.422;QD=19.34;ReadPosRankSum=1.703;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2334,267,0 chrII 307989 . T C 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;MQRankSum=-1.293;QD=17.09;ReadPosRankSum=2.239;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2032,231,0 chrII 307994 . C A 2083 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=17.36;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2116,237,0 chrII 308006 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=17.94;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2293,255,0 chrII 308083 . A G 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=113;Dels=0.00;FS=2.958;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=1.264;QD=21.09;ReadPosRankSum=2.338;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,108:113:99:2416,276,0 chrII 308205 . A G 3130 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=23.19;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3163,363,0 chrII 308284 . A G 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=102;Dels=0.00;FS=3.053;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.342;QD=20.52;ReadPosRankSum=2.351;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:2,98:102:99:2126,246,0 chrII 308422 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2311,252,0 chrII 308850 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.09;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1535,168,0 chrII 308890 . A G 831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.328;QD=16.96;ReadPosRankSum=2.350;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:864,99,0 chrII 309226 . G A 4974.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.1765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4974,540,0 chrII 309343 . C T 4853.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.5119;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4853,528,0 chrII 309408 . T C 4389.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.17;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4389,507,0 chrII 309476 . C T 5638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=238;Dels=0.00;FS=4.034;HaplotypeScore=19.7379;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.888;QD=23.69;ReadPosRankSum=-0.262;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5638,621,0 chrII 309603 . G A 5615.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.4235;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.31;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5615,612,0 chrII 309686 . A G 5607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=257;Dels=0.00;FS=2.876;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.395;QD=21.82;ReadPosRankSum=2.402;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:2,254:257:99:5607,630,0 chrII 309822 . C T 6102.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.20;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6102,675,0 chrII 310032 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=232;Dels=0.00;FS=5.657;HaplotypeScore=8.9604;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.354;QD=18.61;ReadPosRankSum=2.926;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:3,227:232:99:4318,504,0 chrII 310088 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.08;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4198,465,0 chrII 310381 . A T 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=120;Dels=0.00;FS=7.398;HaplotypeScore=22.4082;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=-1.704;QD=15.42;ReadPosRankSum=4.040;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:6,114:120:99:1884,207,0 chrII 310571 . G A 2730 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.74;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2763,309,0 chrII 310706 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=162;Dels=0.00;FS=2.848;HaplotypeScore=14.4695;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.902;QD=21.22;ReadPosRankSum=2.404;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3438,384,0 chrII 310972 . G C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3652;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.34;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3798,444,0 chrII 311036 . A G 2543 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.27;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2576,291,0 chrII 311054 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.21;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2965,321,0 chrII 311099 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.8200;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.80;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3194,351,0 chrII 311267 . G C 4648.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.13;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4648,525,0 chrII 311366 . A C 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.536;QD=22.43;ReadPosRankSum=1.696;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,193:198:99:4442,504,0 chrII 311676 . A G 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.431;QD=19.94;ReadPosRankSum=1.672;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2366,273,0 chrII 312167 . G C 4408.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.3141;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.71;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4408,504,0 chrII 312299 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.71;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3816,420,0 chrII 312473 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.856;QD=20.52;ReadPosRankSum=1.691;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3488,399,0 chrII 313283 . A G 2063 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.05;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2096,243,0 chrII 313313 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6495;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.72;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1699,192,0 chrII 313334 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=17.5650;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.771;QD=18.02;ReadPosRankSum=1.568;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:3,116:120:99:2196,243,0 chrII 313427 . T C 2468 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.07;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2501,285,0 chrII 313448 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.40;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2630,288,0 chrII 313673 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.48;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2573,288,0 chrII 313835 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2591,285,0 chrII 313868 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.20;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2475,273,0 chrII 314198 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.6031;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.51;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4210,477,0 chrII 314258 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.58;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3583,390,0 chrII 314330 . G A 4146.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.42;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4146,444,0 chrII 315082 . T C 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.055;QD=24.25;ReadPosRankSum=1.692;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2143,243,0 chrII 315271 . C T 2846 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.72;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2879,315,0 chrII 315318 . T A 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.962;QD=24.17;ReadPosRankSum=1.705;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3078,345,0 chrII 315655 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.358;QD=21.27;ReadPosRankSum=1.702;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2543,288,0 chrII 315851 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=135;Dels=0.00;FS=6.120;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.377;QD=22.47;ReadPosRankSum=2.394;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:3066,348,0 chrII 315988 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.18;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3347,372,0 chrII 316012 . A G 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.356;QD=20.22;ReadPosRankSum=1.708;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2985,327,0 chrII 316189 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.85;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3431,375,0 chrII 316739 . A T 1546 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=24.54;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1579,171,0 chrII 316854 . G A 794 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.69;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:827,87,0 chrII 316923 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1041,117,0 chrII 317232 . A G 2606 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.66;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2639,306,0 chrII 317339 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.28;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2827,306,0 chrII 317666 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3774,426,0 chrII 317892 . T A 2040 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2073,225,0 chrII 318192 . G C 1953 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.71;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1986,222,0 chrII 318225 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2160,243,0 chrII 318380 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.89;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2879,342,0 chrII 318400 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.36;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3728,396,0 chrII 318982 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.41;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2838,309,0 chrII 319000 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.46;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2877,315,0 chrII 319018 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.11;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2804,306,0 chrII 319087 . C T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.98;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4413,483,0 chrII 319306 . A G 5507.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.43;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5507,612,0 chrII 319900 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.85;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3554,390,0 chrII 320491 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.00;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2283,243,0 chrII 320539 . A G 2065 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.97;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2098,240,0 chrII 320583 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.63;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2443,261,0 chrII 320632 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.77;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2961,324,0 chrII 320644 . T G 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=154;Dels=0.00;FS=2.752;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.168;QD=20.11;ReadPosRankSum=2.402;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3130,345,0 chrII 320656 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=169;Dels=0.00;FS=12.832;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.512;QD=19.06;ReadPosRankSum=2.958;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3255,369,0 chrII 320788 . A T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.41;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4940,540,0 chrII 320851 . T C 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=216;Dels=0.00;FS=3.135;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.980;QD=23.21;ReadPosRankSum=1.683;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:5013,567,0 chrII 321309 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2152,243,0 chrII 321553 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2755,297,0 chrII 321773 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.35;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2447,273,0 chrII 321857 . G T 2708 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.8180;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.95;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2741,300,0 chrII 321906 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=5.287;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.289;QD=24.43;ReadPosRankSum=1.704;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3087,339,0 chrII 322002 . C T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.9491;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.99;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3978,429,0 chrII 322122 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=6.098;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.839;QD=23.16;ReadPosRankSum=2.391;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3938,444,0 chrII 322182 . A T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.81;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3527,396,0 chrII 322187 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.81;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3704,396,0 chrII 322610 . G C 3374.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.59;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3374,378,0 chrII 322823 . G A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.73;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4368,483,0 chrII 322968 . T C 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=214;Dels=0.00;FS=7.079;HaplotypeScore=13.3832;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.419;QD=22.50;ReadPosRankSum=2.381;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4815,555,0 chrII 323106 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.41;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3787,417,0 chrII 323214 . C G 3510.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.09;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3510,396,0 chrII 323896 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.35;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:3983,450,0 chrII 324106 . A C 3183 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.58;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3216,354,0 chrII 324135 . T C 2898 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.82;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2931,336,0 chrII 324185 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.84;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2942,321,0 chrII 324220 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.64;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2388,267,0 chrII 324467 . T G 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=170;Dels=0.00;FS=2.711;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.455;QD=24.28;ReadPosRankSum=0.686;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4127,468,0 chrII 324761 . G A 4037.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=24.0661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4037,441,0 chrII 325371 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.23;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,158:163:99:3624,393,0 chrII 325802 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.60;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3704,420,0 chrII 325889 . C T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.23;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3779,420,0 chrII 326118 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.28;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3679,402,0 chrII 326179 . A G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=151;Dels=0.05;FS=5.482;HaplotypeScore=15.7420;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.014;QD=20.22;ReadPosRankSum=2.922;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:3,139:144:99:3086,342,0 chrII 326293 . A T 2839 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.90;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2872,324,0 chrII 326339 . T C 2788 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.13;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2821,327,0 chrII 326357 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.60;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2700,297,0 chrII 326394 . A G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=115;Dels=0.00;FS=5.879;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.841;QD=19.50;ReadPosRankSum=2.885;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:3,111:115:99:2275,258,0 chrII 326411 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.20;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2275,252,0 chrII 326506 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.93;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3877,420,0 chrII 326592 . T A 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=99;Dels=0.00;FS=3.329;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.297;QD=20.87;ReadPosRankSum=1.627;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2099,234,0 chrII 326660 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.80;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2387,264,0 chrII 326673 . T A 2475 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=21.90;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2508,279,0 chrII 326680 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=19.72;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2439,279,0 chrII 326686 . A T 2501 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=18.80;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2534,291,0 chrII 326898 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=18.69;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2201,243,0 chrII 326899 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=19.68;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2316,252,0 chrII 327003 . G T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.0628;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.34;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4272,477,0 chrII 327179 . A G 2973 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.65;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3006,330,0 chrII 327193 . G T 2735 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.04;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2768,303,0 chrII 327347 . T C 2277 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.00;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2310,261,0 chrII 327403 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.32;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2342,255,0 chrII 327556 . A T 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-0.278;QD=22.65;ReadPosRankSum=1.604;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1868,207,0 chrII 327596 . A G 2010 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.4948;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.10;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2043,231,0 chrII 327875 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=24.00;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3312,369,0 chrII 327935 . C A 3192 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.71;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3225,351,0 chrII 327936 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.42;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3203,345,0 chrII 327972 . T C 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.354;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-1.607;QD=20.86;ReadPosRankSum=1.682;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2933,321,0 chrII 327989 . T C 2514 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.19;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2547,300,0 chrII 328054 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.96;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3395,366,0 chrII 328068 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.87;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3556,390,0 chrII 328087 . C A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.48;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3529,381,0 chrII 328094 . T A 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-1.694;QD=17.59;ReadPosRankSum=1.713;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3199,348,0 chrII 328179 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.06;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2824,312,0 chrII 328278 . A C 3146 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.30;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3179,354,0 chrII 328340 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.01;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3035,342,0 chrII 328525 . A G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.158;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.289;QD=21.14;ReadPosRankSum=1.674;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2570,294,0 chrII 328531 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.28;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2544,273,0 chrII 328557 . A G 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.543;QD=18.78;ReadPosRankSum=1.701;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2136,227,0 chrII 328641 . T A 2501 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2534,288,0 chrII 328922 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3349,372,0 chrII 329137 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.75;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3393,381,0 chrII 329298 . T A 3132 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0976;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.21;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3165,342,0 chrII 329654 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1482,162,0 chrII 330203 . T A 1808 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1841,198,0 chrII 331350 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=3.424;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.207;QD=22.45;ReadPosRankSum=1.711;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3705,414,0 chrII 331400 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.34;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3291,369,0 chrII 331446 . T A 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.0795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.423;QD=21.46;ReadPosRankSum=1.711;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3626,408,0 chrII 331580 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=166;Dels=0.00;FS=7.237;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.275;QD=19.92;ReadPosRankSum=2.420;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3307,363,0 chrII 331804 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=179;Dels=0.00;FS=12.390;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.134;QD=22.72;ReadPosRankSum=3.410;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:4,174:179:99:4066,456,0 chrII 331827 . T A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.95;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3534,402,0 chrII 332522 . G T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.72;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3535,384,0 chrII 332540 . T C 2784 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.03;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2817,318,0 chrII 332548 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=4.964;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.803;QD=19.63;ReadPosRankSum=1.707;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2761,309,0 chrII 332630 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.02;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2818,306,0 chrII 332654 . T C 3056 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.24;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3089,351,0 chrII 332940 . C G 2192 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.1941;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.60;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2225,252,0 chrII 333235 . A G 3096 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3129,345,0 chrII 333270 . A T 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.104;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.577;QD=21.99;ReadPosRankSum=1.609;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3134,333,0 chrII 333321 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.4746;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.86;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2831,306,0 chrII 333347 . T A 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=155;Dels=0.00;FS=6.815;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.387;QD=22.08;ReadPosRankSum=2.339;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3422,378,0 chrII 333382 . T A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.41;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3787,411,0 chrII 333434 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.3586;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.26;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3720,420,0 chrII 334070 . T C 1358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.010;HaplotypeScore=3.5495;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-1.207;QD=20.58;ReadPosRankSum=1.680;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1391,159,0 chrII 334196 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.87;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1537,171,0 chrII 334381 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=23.84;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2059,225,0 chrII 334509 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2149,240,0 chrII 335007 . T C 5227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=235;Dels=0.00;FS=5.769;HaplotypeScore=21.9978;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.407;QD=22.24;ReadPosRankSum=2.883;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:3,229:235:99:5227,588,0 chrII 335043 . A T 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.081;QD=20.97;ReadPosRankSum=1.684;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4572,507,0 chrII 335049 . T A 4487.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.59;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4487,498,0 chrII 335092 . C T 5413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=13.9486;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.404;QD=20.35;ReadPosRankSum=0.827;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:1,263:266:99:5413,594,0 chrII 337090 . A T 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=15.8420;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.443;QD=21.11;ReadPosRankSum=1.708;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3073,333,0 chrII 337453 . T C 5806.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.50;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5806,654,0 chrII 337526 . T C 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=206;Dels=0.00;FS=3.716;HaplotypeScore=12.9707;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.260;QD=21.13;ReadPosRankSum=1.697;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,199:206:99:4352,483,0 chrII 337611 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=4.514;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.581;QD=21.14;ReadPosRankSum=1.717;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:4905,546,0 chrII 337786 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.38;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2591,285,0 chrII 337975 . T A 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.391;QD=23.01;ReadPosRankSum=1.653;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3070,348,0 chrII 338226 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.8554;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.626;QD=22.64;ReadPosRankSum=2.014;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3374,381,0 chrII 338408 . G T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.0135;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.65;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4375,477,0 chrII 338664 . A T 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.383;QD=20.73;ReadPosRankSum=1.696;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3939,435,0 chrII 338668 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.09;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3858,423,0 chrII 339008 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.26;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3317,369,0 chrII 339083 . T G 3440.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3440,387,0 chrII 339200 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3442,378,0 chrII 339377 . T G 3982.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3982,456,0 chrII 339511 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.39;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3113,360,0 chrII 339739 . T C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=3.300;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.968;QD=22.60;ReadPosRankSum=1.713;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4227,477,0 chrII 339813 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.16;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3412,375,0 chrII 339902 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-1.162;QD=20.39;ReadPosRankSum=1.688;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3255,360,0 chrII 339903 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.541;QD=19.19;ReadPosRankSum=1.602;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,159:164:99:3180,360,0 chrII 339966 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.9309;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.78;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3283,363,0 chrII 340279 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.47;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2715,294,0 chrII 340534 . C G 2885 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=20.91;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2918,327,0 chrII 340549 . C A 2392 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=19.14;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2425,264,0 chrII 340550 . T C 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=0.296;QD=18.48;ReadPosRankSum=1.676;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2306,264,0 chrII 340757 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.32;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2845,312,0 chrII 340842 . A T 2253 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=7.1577;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.48;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2286,255,0 chrII 340843 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=7.1577;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.23;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2258,252,0 chrII 341186 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.591;QD=22.77;ReadPosRankSum=1.672;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3984,462,0 chrII 341233 . A G 3215 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.72;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3248,378,0 chrII 341287 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.93;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3106,351,0 chrII 341391 . T A 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=9.072;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.903;QD=21.13;ReadPosRankSum=2.347;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3076,345,0 chrII 341451 . A G 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=3.222;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.687;QD=24.10;ReadPosRankSum=1.705;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3070,342,0 chrII 341632 . C T 4606.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4606,495,0 chrII 341930 . T A 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.101;DP=166;Dels=0.00;FS=14.969;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.848;QD=19.77;ReadPosRankSum=2.954;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3281,353,0 chrII 341973 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.6715;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=1.485;QD=22.10;ReadPosRankSum=-0.857;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4066,459,0 chrII 342023 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.79;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3589,402,0 chrII 342025 . G C 3749.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=20.16;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3749,423,0 chrII 342041 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.490;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.302;QD=20.33;ReadPosRankSum=1.712;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3537,405,0 chrII 342265 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.7755;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.60;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3103,336,0 chrII 342383 . G T 2930 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2963,330,0 chrII 342611 . T G 2084 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2117,249,0 chrII 342723 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2188,237,0 chrII 342848 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.47;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,48:51:99:1128,129,0 chrII 342983 . T C 481 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:57:514,57,0 chrII 343245 . A G 2154 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.16;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2187,246,0 chrII 343406 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.91;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3742,408,0 chrII 343418 . C T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.32;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3795,408,0 chrII 343713 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=220;Dels=0.00;FS=2.943;HaplotypeScore=10.7082;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.667;QD=19.24;ReadPosRankSum=2.393;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:4232,492,0 chrII 343845 . C T 4886.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.34;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4886,540,0 chrII 343970 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=6.525;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.938;QD=22.21;ReadPosRankSum=2.406;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3753,423,0 chrII 344069 . T C 864.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;DP=159;Dels=0.00;FS=9.495;HaplotypeScore=139.7954;MLEAC=1;MLEAF=0.500;MQ=48.56;MQ0=0;MQRankSum=4.645;QD=5.43;ReadPosRankSum=-2.304;SB=-2.590e+02 GT:AD:DP:GQ:PL 0/1:111,46:159:99:894,0,752 chrII 344093 . A G 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DP=152;Dels=0.01;FS=4.357;HaplotypeScore=15.9737;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.115;QD=11.90;ReadPosRankSum=1.709;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:1842,204,0 chrII 344182 . T G 2197 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=97.3816;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=18.46;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2230,252,0 chrII 344211 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=18.17;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2013,225,0 chrII 344225 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=16.00;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1569,186,0 chrII 344282 . C T 2121 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=21.00;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2154,240,0 chrII 344505 . T A 10.52 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=72.2974;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-1.130;QD=0.13;ReadPosRankSum=-2.303;SB=-5.711e+01 GT:AD:DP:GQ:PL 0/1:82,2:84:13:40,0,13 chrII 344506 . T A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=72.2974;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-1.306;QD=0.26;ReadPosRankSum=2.333;SB=-5.240e+02 GT:AD:DP:GQ:PL 0/1:2,82:84:34:52,0,34 chrII 344668 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.75;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4554,519,0 chrII 344938 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4779;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.55;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2684,294,0 chrII 344959 . A G 2842 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.37;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2875,324,0 chrII 345046 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.61;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2216,240,0 chrII 345073 . T A 2056 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.64;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2089,234,0 chrII 345172 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.39;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3512,381,0 chrII 345232 . G C 2256 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.69;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2289,267,0 chrII 345288 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.59;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1614,180,0 chrII 346363 . A G 2607 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.67;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2640,297,0 chrII 346386 . A C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=107;Dels=0.00;FS=3.027;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.128;QD=22.61;ReadPosRankSum=2.403;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2452,270,0 chrII 346437 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.90;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2381,267,0 chrII 346559 . G A 2391 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.21;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2424,261,0 chrII 346636 . A G 2444 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.06;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2477,276,0 chrII 346741 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2507,270,0 chrII 347192 . T C 3176 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.75;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3209,366,0 chrII 347512 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.748;QD=23.51;ReadPosRankSum=1.696;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2266,255,0 chrII 347572 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.59;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1998,225,0 chrII 347585 . A G 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=86;Dels=0.00;FS=4.058;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.000;QD=19.17;ReadPosRankSum=1.691;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1682,169,0 chrII 347803 . T A 2339 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.71;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2372,261,0 chrII 347856 . T G 2368 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3257;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.92;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2401,267,0 chrII 347935 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.55;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3028,339,0 chrII 348121 . T A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.4289;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.91;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4185,456,0 chrII 348445 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.80;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2986,336,0 chrII 348478 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.04;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2578,282,0 chrII 348625 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=24.49;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3268,369,0 chrII 348664 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.040;DP=139;Dels=0.00;FS=6.180;HaplotypeScore=14.2569;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.365;QD=19.68;ReadPosRankSum=2.396;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2769,318,0 chrII 348793 . G A 4431.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.35;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4431,474,0 chrII 348820 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.07;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3553,384,0 chrII 348823 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.916;QD=19.98;ReadPosRankSum=1.672;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3476,390,0 chrII 349147 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.31;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3800,411,0 chrII 349415 . A T 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.197;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.470;QD=22.39;ReadPosRankSum=1.645;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2698,297,0 chrII 349467 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.51;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2689,312,0 chrII 349506 . A G 2587 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.69;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2620,303,0 chrII 349590 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.70;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2593,276,0 chrII 349989 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=24.14;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2882,327,0 chrII 350030 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=23.69;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2402,270,0 chrII 350081 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=22.64;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1482,165,0 chrII 350135 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=17.84;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:925,99,0 chrII 350166 . A G 1171 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;QD=17.22;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1204,138,0 chrII 350168 . A G 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=-0.968;QD=17.60;ReadPosRankSum=1.681;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1230,135,0 chrII 350178 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=17.39;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1268,135,0 chrII 350225 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=0.14;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,86:86:6:43,6,0 chrII 350246 . C T 339 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=3.65;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,93:93:39:372,39,0 chrII 350376 . T C 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=86.9687;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;MQRankSum=-0.731;QD=21.18;ReadPosRankSum=1.694;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1939,216,0 chrII 350451 . C A 2617 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=21.99;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2650,291,0 chrII 350491 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=24.15;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2279,252,0 chrII 350563 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=8.2136;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=21.00;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2154,240,0 chrII 350580 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.95;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2107,222,0 chrII 350589 . T G 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.223;QD=19.13;ReadPosRankSum=1.664;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1965,228,0 chrII 350657 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=23.13;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2184,237,0 chrII 350675 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.88;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1933,210,0 chrII 350686 . A C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=3.784;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-1.520;QD=20.11;ReadPosRankSum=1.626;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2004,225,0 chrII 350698 . C G 1873 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=20.58;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1906,216,0 chrII 350727 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.13;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1986,225,0 chrII 350775 . A T 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.3554;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.019;QD=22.33;ReadPosRankSum=1.695;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2110,228,0 chrII 350797 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.65;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2049,228,0 chrII 350900 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=117;Dels=0.00;FS=3.447;HaplotypeScore=16.3288;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-1.130;QD=19.91;ReadPosRankSum=1.672;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2363,276,0 chrII 351158 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.353;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;MQRankSum=0.179;QD=22.56;ReadPosRankSum=1.637;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3271,372,0 chrII 351335 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.34;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3521,390,0 chrII 351500 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=16.86;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2023,228,0 chrII 351623 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.106;QD=21.11;ReadPosRankSum=1.711;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3462,393,0 chrII 351999 . G A 631 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.53;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:72:664,72,0 chrII 352034 . C G 1163 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.73;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1196,138,0 chrII 352358 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.85;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3633,402,0 chrII 352751 . C T 5003.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.49;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5003,543,0 chrII 352907 . T C 4689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=229;Dels=0.00;FS=3.021;HaplotypeScore=12.8198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.384;QD=20.48;ReadPosRankSum=2.363;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:4689,537,0 chrII 353413 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.36;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2553,285,0 chrII 353774 . G T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.25;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3308,363,0 chrII 353810 . A G 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=125;Dels=0.00;FS=12.148;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.339;QD=24.18;ReadPosRankSum=2.390;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,122:125:99:3055,339,0 chrII 353889 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.165;QD=21.24;ReadPosRankSum=1.688;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3334,372,0 chrII 353932 . A G 4381.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.6496;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.58;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4381,492,0 chrII 354093 . A T 5370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.525;QD=24.63;ReadPosRankSum=1.716;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:5370,580,0 chrII 354317 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.503;DP=151;Dels=0.00;FS=4.466;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.480;QD=23.21;ReadPosRankSum=1.617;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3504,377,0 chrII 354427 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=3.690;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.456;QD=23.22;ReadPosRankSum=1.682;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3238,366,0 chrII 354720 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2631,282,0 chrII 355349 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.55;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3858,423,0 chrII 355406 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.9941;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.949;QD=20.97;ReadPosRankSum=-0.061;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4173,439,0 chrII 355592 . G T 2942 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.17;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2975,321,0 chrII 355622 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=19.20;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2548,279,0 chrII 355626 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.19;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2507,273,0 chrII 355748 . T G 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.458;QD=18.45;ReadPosRankSum=1.707;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2579,303,0 chrII 355801 . A G 4214.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.28;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4214,474,0 chrII 355836 . A G 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=4.179;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.701;QD=24.44;ReadPosRankSum=1.693;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4374,492,0 chrII 356060 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.680;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.612;QD=22.14;ReadPosRankSum=1.706;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2978,330,0 chrII 356064 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=22.02;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3028,327,0 chrII 356128 . T C 2991 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.67;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3024,339,0 chrII 356462 . C G 2757 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.37;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2790,327,0 chrII 356648 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4062,456,0 chrII 356805 . C T 5533.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.85;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5533,603,0 chrII 357199 . A G 4527.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.25;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4527,516,0 chrII 357536 . G T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.89;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4196,462,0 chrII 357539 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=1.019;QD=20.65;ReadPosRankSum=1.699;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4316,468,0 chrII 357641 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.90;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3402,369,0 chrII 357644 . A G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.596;QD=16.52;ReadPosRankSum=1.694;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3106,357,0 chrII 357725 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.32;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4286,465,0 chrII 358277 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3936,423,0 chrII 358555 . A G 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=3.066;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.799;QD=22.03;ReadPosRankSum=1.665;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3437,387,0 chrII 359006 . G A 3033 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=24.07;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3066,333,0 chrII 359116 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2833,306,0 chrII 359576 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.41;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3979,435,0 chrII 359662 . A G 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=3.025;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.662;QD=24.06;ReadPosRankSum=2.426;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4956,552,0 chrII 359966 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.50;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3784,420,0 chrII 359978 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.22;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4116,450,0 chrII 360531 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2169,243,0 chrII 360769 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.36;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3117,351,0 chrII 361006 . G C 6215.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=12.2264;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.02;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6215,708,0 chrII 361315 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3386,384,0 chrII 361354 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3667,393,0 chrII 361468 . T C 2713 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2746,315,0 chrII 361594 . T C 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=4.331;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.454;QD=22.42;ReadPosRankSum=1.698;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2365,264,0 chrII 361627 . A G 1992 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.19;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2025,225,0 chrII 361669 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.63;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1798,195,0 chrII 362051 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2076;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.96;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2354,255,0 chrII 362183 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.459;QD=22.75;ReadPosRankSum=1.687;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3458,390,0 chrII 362354 . C T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.63;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3403,366,0 chrII 362377 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.98;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2890,321,0 chrII 362403 . T C 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.102;QD=21.15;ReadPosRankSum=1.656;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2909,327,0 chrII 362800 . G C 4301.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.12;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4301,483,0 chrII 362833 . C T 4782.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.56;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4782,522,0 chrII 363060 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.30;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3523,393,0 chrII 363144 . T C 2326 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.05;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2359,264,0 chrII 363224 . C T 2018 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.02;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2051,222,0 chrII 363228 . T C 1943 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.67;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1976,225,0 chrII 363243 . A T 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.166;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.509;QD=20.86;ReadPosRankSum=1.651;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1806,195,0 chrII 363277 . C G 1502 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=17.26;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1535,174,0 chrII 363362 . A G 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.510;QD=22.35;ReadPosRankSum=1.700;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2491,285,0 chrII 363386 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.75;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2353,255,0 chrII 363408 . A G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.2228;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.389;QD=20.89;ReadPosRankSum=1.697;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2122,240,0 chrII 363574 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.12;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2614,291,0 chrII 363700 . T G 3116 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=19.00;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3149,351,0 chrII 363701 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.238;QD=18.25;ReadPosRankSum=1.667;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3007,342,0 chrII 363715 . T C 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=173;Dels=0.00;FS=2.581;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-1.622;QD=16.62;ReadPosRankSum=2.936;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:2909,318,0 chrII 363721 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=15.69;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2905,309,0 chrII 363796 . A C 4187.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.47;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4187,480,0 chrII 364063 . T A 2877 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=18.21;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2910,315,0 chrII 364073 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=15.84;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2472,273,0 chrII 364161 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.379;QD=21.11;ReadPosRankSum=1.622;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3315,381,0 chrII 364408 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.395;QD=21.89;ReadPosRankSum=1.701;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2507,282,0 chrII 364642 . A G 592 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.50;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:32:75:625,75,0 chrII 364711 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.51;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1843,198,0 chrII 364895 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.04;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2314,255,0 chrII 365492 . G T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.98;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4461,486,0 chrII 365654 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3395,369,0 chrII 365830 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.58;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2126,231,0 chrII 366120 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0491;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.97;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3197,348,0 chrII 366249 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.82;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4248,471,0 chrII 366264 . C T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4441;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.05;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4031,444,0 chrII 366315 . T A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.94;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3958,441,0 chrII 366323 . T A 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.5060;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.144;QD=18.24;ReadPosRankSum=1.698;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:3776,408,0 chrII 366754 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.62;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2521,273,0 chrII 366810 . G T 2498 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.25;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2531,273,0 chrII 366921 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.79;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2735,300,0 chrII 367429 . T C 2565 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.92;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2598,291,0 chrII 367502 . T C 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=145;Dels=0.00;FS=2.791;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.178;QD=20.90;ReadPosRankSum=2.416;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3064,345,0 chrII 367503 . T C 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.337;QD=20.43;ReadPosRankSum=1.708;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3016,342,0 chrII 367531 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.59;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2812,312,0 chrII 367587 . A G 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.637;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.207;QD=21.41;ReadPosRankSum=1.706;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2923,327,0 chrII 367690 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.29;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3141,351,0 chrII 367774 . A T 3176 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.85;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3209,351,0 chrII 367789 . C A 3006 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.43;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3039,327,0 chrII 367953 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.26;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2459,276,0 chrII 368093 . C T 2055 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2088,225,0 chrII 368400 . T C 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=100;Dels=0.00;FS=2.754;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.415;QD=20.07;ReadPosRankSum=2.349;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,96:100:99:2040,228,0 chrII 368409 . A T 1951 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.71;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1984,222,0 chrII 368442 . T C 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=110;Dels=0.00;FS=2.773;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.481;QD=18.82;ReadPosRankSum=2.360;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2103,237,0 chrII 368565 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.49;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3181,360,0 chrII 368630 . T G 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.105;QD=22.82;ReadPosRankSum=1.642;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2703,303,0 chrII 368695 . A T 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=134;Dels=0.00;FS=2.995;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.835;QD=23.02;ReadPosRankSum=2.358;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3118,348,0 chrII 368716 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.45;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3245,351,0 chrII 369085 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1932,219,0 chrII 369259 . T C 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.095;QD=23.01;ReadPosRankSum=1.711;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3796,429,0 chrII 369384 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=17.7066;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.74;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3544,384,0 chrII 369478 . C T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.39;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4397,480,0 chrII 369535 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.26;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4173,453,0 chrII 369657 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.54;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3093,336,0 chrII 369692 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.29;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,144:150:99:2927,327,0 chrII 369786 . T A 1274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.163;DP=99;Dels=0.00;FS=4.280;HaplotypeScore=56.6025;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.656;QD=12.87;ReadPosRankSum=-0.123;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:9,90:99:99:1307,150,0 chrII 369831 . G C 1259 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9703;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=15.54;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1292,147,0 chrII 369847 . A C 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-1.648;QD=15.73;ReadPosRankSum=1.690;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1339,153,0 chrII 369865 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=18.72;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1905,204,0 chrII 369891 . A G 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.915;DP=115;Dels=0.00;FS=2.992;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.225;QD=18.28;ReadPosRankSum=1.958;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2135,246,0 chrII 371139 . T G 1850 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.14;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,98:102:99:1883,216,0 chrII 371446 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2492,273,0 chrII 371554 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.17;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2813,303,0 chrII 371746 . A C 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=129;Dels=0.00;FS=3.487;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.012;QD=21.78;ReadPosRankSum=1.704;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,124:129:99:2843,327,0 chrII 372331 . T C 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.333;DP=476;Dels=0.00;FS=0.333;HaplotypeScore=16.8186;MLEAC=1;MLEAF=0.500;MQ=46.35;MQ0=0;MQRankSum=-13.792;QD=0.14;ReadPosRankSum=-6.009;SB=-1.878e+03 GT:AD:DP:GQ:PL 0/1:271,203:476:95:95,0,4848 chrII 372351 . T C 5574.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=480;Dels=0.00;FS=6.048;HaplotypeScore=19.7298;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;MQRankSum=-1.195;QD=11.61;ReadPosRankSum=2.977;SB=-5.900e+03 GT:AD:DP:GQ:PL 1/1:3,474:480:99:5574,656,0 chrII 372396 . C A 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;DP=433;Dels=0.00;FS=1.140;HaplotypeScore=12.6076;MLEAC=1;MLEAF=0.500;MQ=46.96;MQ0=0;MQRankSum=-13.132;QD=1.03;ReadPosRankSum=-15.714;SB=-1.560e+03 GT:AD:DP:GQ:PL 0/1:254,178:433:99:478,0,3943 chrII 372547 . A G 6249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.090;DP=273;Dels=0.00;FS=14.752;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;MQRankSum=1.425;QD=22.89;ReadPosRankSum=4.175;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:6,265:273:99:6249,702,0 chrII 372688 . C T 5055.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.62;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5055,576,0 chrII 372730 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=195;Dels=0.00;FS=9.454;HaplotypeScore=25.0344;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.510;QD=22.51;ReadPosRankSum=0.938;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4390,492,0 chrII 372954 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.98;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2531,276,0 chrII 373012 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.40;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2609,285,0 chrII 373340 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.24;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1875,210,0 chrII 373488 . A C 4026.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4026,453,0 chrII 373782 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=135;Dels=0.00;FS=9.740;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.147;QD=22.19;ReadPosRankSum=2.340;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3029,345,0 chrII 373845 . A G 2851 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2884,324,0 chrII 373903 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.23;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2834,306,0 chrII 373990 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.70;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4242,462,0 chrII 374072 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.666;QD=21.64;ReadPosRankSum=1.708;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3128,354,0 chrII 374119 . G A 4380.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.7785;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.69;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4380,477,0 chrII 374440 . C T 6238.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=12.8493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-3.427e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6238,676,0 chrII 375013 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.96;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2427,264,0 chrII 375026 . A G 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.085;QD=18.86;ReadPosRankSum=1.700;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2070,231,0 chrII 375149 . T A 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0411;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.332;QD=24.64;ReadPosRankSum=1.708;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3622,390,0 chrII 375303 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.5364;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.069;QD=23.07;ReadPosRankSum=-0.597;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4130,465,0 chrII 375370 . T A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.40;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4238,471,0 chrII 375650 . T G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=113;Dels=0.00;FS=3.210;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.827;QD=22.55;ReadPosRankSum=1.389;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2581,291,0 chrII 375874 . T A 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=18.2368;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.706;QD=21.85;ReadPosRankSum=0.552;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2983,321,0 chrII 375942 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=192;Dels=0.00;FS=2.633;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.508;QD=24.07;ReadPosRankSum=2.411;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4621,525,0 chrII 375972 . G A 4276.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.0885;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.99;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4276,459,0 chrII 376093 . C T 4675.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6296;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.97;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4675,510,0 chrII 376375 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.59;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2910,318,0 chrII 376405 . T C 2446 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.08;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2479,276,0 chrII 376489 . C A 2308 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.31;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2341,252,0 chrII 376523 . A G 2670 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.27;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2703,303,0 chrII 376702 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.187;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.632;QD=23.09;ReadPosRankSum=-0.910;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3269,351,0 chrII 377588 . A G 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=197;Dels=0.00;FS=3.968;HaplotypeScore=19.4586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.307;QD=20.99;ReadPosRankSum=1.642;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,191:197:99:4136,483,0 chrII 377771 . A G 4777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=225;Dels=0.00;FS=6.063;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.354;QD=21.23;ReadPosRankSum=2.969;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:4777,540,0 chrII 378218 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.41;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3909,426,0 chrII 378287 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.14;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4350,471,0 chrII 378485 . C G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1544;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.38;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3678,417,0 chrII 378520 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=165;Dels=0.00;FS=4.771;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.299;QD=20.09;ReadPosRankSum=1.668;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3315,372,0 chrII 378523 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.24;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3339,369,0 chrII 378659 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.146;DP=114;Dels=0.00;FS=9.250;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.660;QD=21.73;ReadPosRankSum=3.271;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:4,109:114:99:2510,285,0 chrII 378683 . T C 2440 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.80;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2473,273,0 chrII 378692 . T C 2416 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.19;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2449,282,0 chrII 378868 . C G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.39;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3298,369,0 chrII 379232 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2720,318,0 chrII 379464 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.331;QD=21.81;ReadPosRankSum=1.675;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2672,300,0 chrII 379589 . C G 2688 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0226;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.00;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2721,309,0 chrII 379598 . T C 2501 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.3913;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.19;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2534,282,0 chrII 379629 . G C 2626 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.7726;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.74;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2659,300,0 chrII 379974 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.419;QD=22.15;ReadPosRankSum=1.665;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3434,390,0 chrII 380638 . C T 6430.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.3023;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.26;SB=-3.490e+03 GT:AD:DP:GQ:PL 1/1:0,262:265:99:6430,697,0 chrII 380911 . T C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=141;Dels=0.01;FS=3.437;HaplotypeScore=18.4258;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=0.187;QD=16.81;ReadPosRankSum=1.657;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2403,282,0 chrII 380929 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=14.34;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:1768,204,0 chrII 380932 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=14.31;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1765,192,0 chrII 380971 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=16.65;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2247,249,0 chrII 381293 . A T 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=125;Dels=0.00;FS=6.561;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.069;QD=21.39;ReadPosRankSum=2.410;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2707,303,0 chrII 381431 . A T 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=4.369;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.168;QD=23.94;ReadPosRankSum=1.712;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4189,462,0 chrII 381522 . T C 4109.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;QD=17.49;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4109,459,0 chrII 381896 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3172,342,0 chrII 382290 . C T 4704.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.29;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4704,513,0 chrII 382389 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.02;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4396,501,0 chrII 382571 . A G 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=212;Dels=0.00;FS=3.354;HaplotypeScore=14.1612;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.452;QD=22.07;ReadPosRankSum=1.699;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4679,525,0 chrII 382644 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.85;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3838,420,0 chrII 382749 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.1972;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.64;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3917,447,0 chrII 382823 . A G 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=160;Dels=0.00;FS=6.612;HaplotypeScore=15.0403;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.730;QD=23.21;ReadPosRankSum=2.419;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3713,414,0 chrII 382880 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.87;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2504,273,0 chrII 382897 . A C 2202 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=20.02;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2235,249,0 chrII 382911 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=18.06;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2074,234,0 chrII 383124 . A T 3003 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=14.6981;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.83;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3036,330,0 chrII 383249 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9838;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.64;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2882,312,0 chrII 383276 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.0986;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.08;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3453,372,0 chrII 383344 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=3.199;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.115;QD=20.60;ReadPosRankSum=1.669;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3461,378,0 chrII 383378 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=146;Dels=0.00;FS=3.024;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.551;QD=20.58;ReadPosRankSum=2.416;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3037,336,0 chrII 383390 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.01;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2995,333,0 chrII 383409 . T A 3193 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0194;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.87;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3226,348,0 chrII 383723 . C T 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=180;Dels=0.00;FS=3.186;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.910;QD=22.54;ReadPosRankSum=0.656;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:4057,456,0 chrII 383768 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.47;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4061,435,0 chrII 383960 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=170;Dels=0.00;FS=7.641;HaplotypeScore=14.5368;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.651;QD=22.22;ReadPosRankSum=2.406;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3777,414,0 chrII 385751 . C A 5258.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.01;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5258,570,0 chrII 387602 . A T 2497 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.98;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2530,285,0 chrII 387619 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.89;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2791,312,0 chrII 387747 . A C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.77;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3598,411,0 chrII 387923 . T C 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=230;Dels=0.00;FS=2.935;HaplotypeScore=8.3633;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.945;QD=22.85;ReadPosRankSum=2.428;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:5256,582,0 chrII 387954 . C T 5228.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.4053;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.97;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5228,561,0 chrII 388386 . C T 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=3.206;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.586;QD=23.36;ReadPosRankSum=-0.637;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3234,348,0 chrII 388424 . G A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.33;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3722,414,0 chrII 388832 . C T 4902.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.57;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4902,555,0 chrII 388996 . C T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.26;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3784,417,0 chrII 389242 . T C 796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=3.641;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=0.140;QD=21.51;ReadPosRankSum=1.545;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:93:829,93,0 chrII 389243 . T C 813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=38;Dels=0.00;FS=6.899;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=0.101;QD=21.39;ReadPosRankSum=2.317;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:2,35:38:93:846,93,0 chrII 389275 . G T 905 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=23.82;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:938,105,0 chrII 389341 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=22.71;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1191,132,0 chrII 389411 . A C 951 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=0;QD=23.77;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:984,108,0 chrII 389479 . C G 445 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=25.8201;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=14.35;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:54:478,54,0 chrII 389492 . T C 374 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=10.69;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:407,45,0 chrII 389557 . G A 864 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.04;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=34.76;MQ0=0;QD=16.00;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:897,96,0 chrII 389570 . C T 885 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=12.7716;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=18.06;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:918,99,0 chrII 389571 . C T 888 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=11.7822;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=18.12;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:921,99,0 chrII 389578 . A T 880 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;MQRankSum=-0.129;QD=18.33;ReadPosRankSum=2.348;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:913,99,0 chrII 389585 . C T 897 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=19.93;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:930,102,0 chrII 389614 . A G 527 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=19.52;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:63:560,63,0 chrII 389620 . G A 457 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=20.77;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:490,54,0 chrII 389683 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.46;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:870,96,0 chrII 389749 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.86;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1441,156,0 chrII 389803 . G C 1721 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.24;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1754,195,0 chrII 389867 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.37;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2063,225,0 chrII 389875 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.09;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1942,222,0 chrII 389935 . C A 3042 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.57;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3075,333,0 chrII 390133 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.6882;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.443;QD=22.42;ReadPosRankSum=1.710;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3542,402,0 chrII 390352 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.68;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3040,333,0 chrII 390400 . C G 2954 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2987,339,0 chrII 390461 . A T 2897 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.81;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2930,324,0 chrII 390744 . A G 2594 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3705;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.27;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2627,288,0 chrII 391464 . A C 4217.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.7311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4217,483,0 chrII 391731 . T A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6035;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.94;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3991,432,0 chrII 392022 . T A 4620.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.57;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4620,501,0 chrII 392314 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.9094;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.060;QD=19.22;ReadPosRankSum=1.711;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3242,372,0 chrII 392522 . G A 78.51 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=0.62;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:12:111,12,0 chrII 392544 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.579;DP=123;Dels=0.00;FS=5.956;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.174;QD=12.21;ReadPosRankSum=2.943;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:1535,174,0 chrII 392785 . T G 2645 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.66;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2678,312,0 chrII 393180 . G T 2079 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=18.56;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2112,234,0 chrII 393191 . A T 1791 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=158.5073;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=17.91;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1824,201,0 chrII 393237 . A C 2159 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=16.61;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2192,246,0 chrII 393507 . G A 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=3.072;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.585;QD=18.73;ReadPosRankSum=1.610;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2693,291,0 chrII 393511 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=18.89;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2640,285,0 chrII 393519 . A T 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=137;Dels=0.00;FS=3.964;HaplotypeScore=4.1303;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.695;QD=17.61;ReadPosRankSum=1.707;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2445,264,0 chrII 393604 . G C 3666.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.63;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3666,411,0 chrII 393708 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.716;QD=21.54;ReadPosRankSum=1.649;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3597,399,0 chrII 393971 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=187;Dels=0.00;FS=2.997;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.843;QD=21.94;ReadPosRankSum=2.370;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4102,459,0 chrII 394376 . G A 5661.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.9653;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.52;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5661,636,0 chrII 394430 . C T 5969.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.78;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5969,672,0 chrII 394726 . G C 2536 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9211;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=15.46;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2569,285,0 chrII 395030 . A G 572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=1.204;QD=20.43;ReadPosRankSum=2.275;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:2,26:28:69:605,69,0 chrII 395115 . C T 722 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:755,84,0 chrII 395218 . G A 743 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.97;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:87:776,87,0 chrII 395258 . C A 1487 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0854;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=23.98;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1520,171,0 chrII 395349 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.00;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1808,201,0 chrII 395476 . T A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=132;Dels=0.00;FS=16.873;HaplotypeScore=43.1370;MLEAC=1;MLEAF=0.500;MQ=45.31;MQ0=0;MQRankSum=-0.317;QD=0.17;ReadPosRankSum=-5.808;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:101,31:132:53:53,0,1553 chrII 395656 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2792;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.64;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4392,477,0 chrII 396967 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3648,408,0 chrII 397645 . A G 4603.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.45;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4603,534,0 chrII 397783 . G A 5917.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.7328;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.05;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5917,648,0 chrII 397813 . T C 4913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.594;QD=23.07;ReadPosRankSum=1.683;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4913,558,0 chrII 397849 . C T 4341.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.72;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4341,489,0 chrII 397984 . A G 4593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.519;QD=23.20;ReadPosRankSum=1.714;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4593,513,0 chrII 398292 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2621,288,0 chrII 398419 . C G 1611 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.20;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1644,189,0 chrII 398452 . A T 1853 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.46;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1886,204,0 chrII 399052 . C A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.61;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3347,366,0 chrII 399535 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3697,405,0 chrII 399796 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.75;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4207,465,0 chrII 400827 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.163;QD=22.37;ReadPosRankSum=1.685;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3289,381,0 chrII 400907 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2786,303,0 chrII 401176 . C A 2914 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2947,318,0 chrII 401307 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.81;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3405,384,0 chrII 402177 . A G 4924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=205;Dels=0.00;FS=15.310;HaplotypeScore=9.6653;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.515;QD=24.02;ReadPosRankSum=2.946;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4924,552,0 chrII 402843 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.396;QD=20.64;ReadPosRankSum=2.349;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3087,354,0 chrII 403621 . C G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.75;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3777,414,0 chrII 404155 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.61;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2589,285,0 chrII 404173 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.61;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2170,246,0 chrII 406111 . G C 3126 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=19.78;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3159,360,0 chrII 406115 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=19.11;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3053,339,0 chrII 406787 . T G 4954.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.82;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4954,567,0 chrII 407477 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.4829;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.04;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2429,276,0 chrII 407562 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=3.314;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.124;QD=20.97;ReadPosRankSum=1.709;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3136,354,0 chrII 407563 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.281;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.012;QD=20.59;ReadPosRankSum=1.662;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3142,357,0 chrII 407573 . T G 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.442;QD=20.04;ReadPosRankSum=1.684;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2939,336,0 chrII 407836 . A G 2756 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.97;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2789,321,0 chrII 408073 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2803,300,0 chrII 408107 . A G 3021 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.50;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3054,336,0 chrII 408483 . G C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.1842;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.28;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3632,414,0 chrII 408644 . T G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=143;Dels=0.00;FS=2.756;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.610;QD=17.66;ReadPosRankSum=2.398;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2558,300,0 chrII 408652 . G C 2650 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.32;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2683,297,0 chrII 408724 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.33;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4355,480,0 chrII 408801 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=177;Dels=0.00;FS=6.195;HaplotypeScore=11.1159;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.826;QD=22.18;ReadPosRankSum=2.366;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3925,441,0 chrII 408987 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.57;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2854,312,0 chrII 409149 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=4.591;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.176;QD=21.50;ReadPosRankSum=1.703;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2592,288,0 chrII 409155 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.72;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2374,267,0 chrII 409364 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=183;Dels=0.00;FS=4.188;HaplotypeScore=11.4164;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.297;QD=21.03;ReadPosRankSum=1.713;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3848,450,0 chrII 409495 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3499,378,0 chrII 410015 . A G 4906.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.2581;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.93;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4906,549,0 chrII 410992 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=199;Dels=0.00;FS=2.321;HaplotypeScore=7.4382;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-2.254;QD=15.30;ReadPosRankSum=2.782;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:3077,360,0 chrII 411003 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.0513;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=16.46;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:3390,360,0 chrII 411152 . T A 5296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=224;Dels=0.00;FS=3.013;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.639;QD=23.64;ReadPosRankSum=2.351;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:5296,579,0 chrII 411233 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=222;Dels=0.00;FS=6.580;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.413;QD=16.91;ReadPosRankSum=2.359;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:2,215:222:99:3753,423,0 chrII 411750 . G A 5863.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.27;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5863,636,0 chrII 412313 . G A 5213.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1428;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.55;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5213,564,0 chrII 412403 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.804;QD=24.04;ReadPosRankSum=2.428;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3341,378,0 chrII 412642 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=193;Dels=0.00;FS=7.223;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.084;QD=22.53;ReadPosRankSum=2.372;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:2,188:193:99:4348,486,0 chrII 412877 . A G 7552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=320;Dels=0.00;FS=6.959;HaplotypeScore=17.5772;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.822;QD=23.60;ReadPosRankSum=2.426;SB=-3.652e+03 GT:AD:DP:GQ:PL 1/1:2,316:320:99:7552,840,0 chrII 413249 . G T 4418.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4418,480,0 chrII 413321 . C A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.4140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4636,513,0 chrII 414898 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.96;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2841,303,0 chrII 414912 . A G 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=2.975;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.332;QD=18.55;ReadPosRankSum=2.414;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2574,288,0 chrII 414926 . T C 2729 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.19;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2762,312,0 chrII 414950 . T C 2339 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=16.95;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2372,276,0 chrII 415547 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.73;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3867,453,0 chrII 415607 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.8367;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=17.70;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3254,363,0 chrII 415663 . G C 1965 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=20.68;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1998,225,0 chrII 415722 . A T 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.345;DP=70;Dels=0.00;FS=9.194;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;MQRankSum=-0.958;QD=0.56;ReadPosRankSum=-3.717;SB=2.03 GT:AD:DP:GQ:PL 1/1:65,5:70:9:71,9,0 chrII 415782 . C T 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;DP=58;Dels=0.00;FS=51.217;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=52.18;MQ0=0;MQRankSum=-2.464;QD=2.19;ReadPosRankSum=-4.465;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,23:58:99:157,0,296 chrII 415846 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.79;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2769,300,0 chrII 415869 . A C 3300.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.40;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3300,372,0 chrII 416297 . T C 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=3.206;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.343;QD=23.66;ReadPosRankSum=1.713;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4353,483,0 chrII 416376 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=175;Dels=0.00;FS=10.288;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.121;QD=20.55;ReadPosRankSum=2.948;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3597,405,0 chrII 416426 . A C 4019.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.1218;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.04;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4019,456,0 chrII 417367 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.34;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3042,330,0 chrII 417449 . C T 2006 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.68;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2039,225,0 chrII 417468 . T C 1915 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.35;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1948,213,0 chrII 417694 . T C 909 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=20.20;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:942,108,0 chrII 417696 . A T 951 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=21.13;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:984,108,0 chrII 417710 . G A 843 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;QD=16.53;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:876,96,0 chrII 417729 . C G 683 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=13.66;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:716,81,0 chrII 417736 . A C 673 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=12.94;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:81:706,81,0 chrII 417744 . C T 756 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=13.50;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:789,87,0 chrII 417797 . T C 1041 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.93;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1074,120,0 chrII 418065 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.35;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,91:94:99:2134,231,0 chrII 418114 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.90;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1726,189,0 chrII 418148 . A C 1394 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=17.65;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1427,162,0 chrII 418150 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=18.00;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,72:77:99:1419,156,0 chrII 418183 . A T 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=6.675;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-0.503;QD=19.55;ReadPosRankSum=1.695;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1851,201,0 chrII 418240 . C G 2415 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.56;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2448,273,0 chrII 418255 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.72;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2444,264,0 chrII 418383 . C A 2606 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=22.47;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2639,291,0 chrII 418404 . T G 2076 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.85;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2109,240,0 chrII 418420 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.51;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1797,195,0 chrII 418450 . A G 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.271;QD=19.32;ReadPosRankSum=3.336;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1482,165,0 chrII 418484 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.14;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1534,165,0 chrII 418505 . T A 1391 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.05;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1424,156,0 chrII 418592 . G C 809 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.21;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:93:842,93,0 chrII 419139 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.9791;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.45;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2750,300,0 chrII 419197 . A G 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=128;Dels=0.00;FS=3.445;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.247;QD=22.64;ReadPosRankSum=1.677;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2931,336,0 chrII 419495 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3699,399,0 chrII 419604 . C G 3665.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.76;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3665,414,0 chrII 419859 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.501;QD=22.25;ReadPosRankSum=1.709;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3359,378,0 chrII 419913 . C G 2737 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.19;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2770,309,0 chrII 419931 . T C 2500 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.32;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2533,288,0 chrII 420076 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.35;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2400,261,0 chrII 420087 . T G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=124;Dels=0.00;FS=4.843;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.170;QD=18.94;ReadPosRankSum=1.704;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2382,264,0 chrII 420137 . A G 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.532;QD=20.57;ReadPosRankSum=1.703;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2522,282,0 chrII 420547 . T C 5870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=270;Dels=0.00;FS=3.059;HaplotypeScore=7.7954;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.251;QD=21.74;ReadPosRankSum=1.706;SB=-3.520e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:5870,651,0 chrII 420565 . A G 5275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=250;Dels=0.00;FS=6.324;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-2.123;QD=21.10;ReadPosRankSum=2.390;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:2,246:250:99:5275,594,0 chrII 420567 . G T 5173.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.78;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5173,585,0 chrII 420885 . A G 4374.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=27.8717;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.13;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4374,498,0 chrII 421030 . G C 3182 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3215,375,0 chrII 421116 . C A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.3960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3962,429,0 chrII 421574 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.60;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3824,414,0 chrII 421692 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3434,390,0 chrII 422076 . C G 2817 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.8499;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.28;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2850,318,0 chrII 422148 . T C 2539 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.89;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2572,285,0 chrII 422164 . T C 2668 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.05;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2701,300,0 chrII 422787 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.79;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2888,315,0 chrII 423264 . A G 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.462;QD=23.36;ReadPosRankSum=1.687;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1832,207,0 chrII 423621 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=110;Dels=0.00;FS=3.613;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.123;QD=24.14;ReadPosRankSum=1.636;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2688,306,0 chrII 423698 . G T 2884 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.89;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2917,324,0 chrII 424154 . A G 5401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=219;Dels=0.00;FS=9.836;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.645;QD=24.66;ReadPosRankSum=2.940;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:5401,594,0 chrII 424367 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.67;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4204,456,0 chrII 424421 . A G 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=143;Dels=0.00;FS=2.947;HaplotypeScore=10.5443;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.215;QD=22.22;ReadPosRankSum=2.398;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3210,360,0 chrII 424448 . A G 3061 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.80;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3094,351,0 chrII 424451 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=18.43;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3222,348,0 chrII 424490 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.74;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4087,456,0 chrII 424553 . C A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.21;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,150:155:99:3288,369,0 chrII 424607 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.05;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3573,396,0 chrII 424811 . T C 2905 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.52;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2938,336,0 chrII 424821 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.96;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3041,330,0 chrII 425011 . A G 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=9.542;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.203;QD=24.68;ReadPosRankSum=1.684;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1835,210,0 chrII 425338 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.26;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4094,462,0 chrII 425449 . G A 5225.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.8892;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.33;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5225,594,0 chrII 425578 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7733;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.37;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4160,450,0 chrII 425770 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.07;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3354,375,0 chrII 425844 . T A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.3606;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.87;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3656,399,0 chrII 425891 . T A 1499 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.72;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1532,165,0 chrII 425982 . A T 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=1.179;QD=20.18;ReadPosRankSum=1.695;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1930,207,0 chrII 426165 . A G 2633 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=24.61;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2666,297,0 chrII 426191 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.77;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2719,300,0 chrII 426299 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.72;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3856,420,0 chrII 426361 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.55;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3699,420,0 chrII 426388 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=158;Dels=0.00;FS=6.104;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.055;QD=18.59;ReadPosRankSum=1.745;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:2971,342,0 chrII 426608 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.13;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3631,411,0 chrII 426669 . C A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.30;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3612,390,0 chrII 426888 . G C 2714 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.81;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2747,309,0 chrII 427568 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.31;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1516,177,0 chrII 427812 . A G 1693 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=9;QD=15.82;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,103:107:99:1726,201,0 chrII 427869 . G A 2268 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=9;QD=18.14;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2301,252,0 chrII 427998 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=204;Dels=0.00;FS=3.096;HaplotypeScore=14.4667;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-1.121;QD=18.00;ReadPosRankSum=1.715;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3672,381,0 chrII 428040 . T C 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=224;Dels=0.00;FS=5.984;HaplotypeScore=8.5772;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;MQRankSum=1.617;QD=10.47;ReadPosRankSum=2.969;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:2379,264,0 chrII 428055 . A T 2481 SnpCluster AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.8393;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=10.93;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:2514,273,0 chrII 428058 . A G 2054 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.411;DP=212;Dels=0.00;FS=14.474;HaplotypeScore=2.8393;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;MQRankSum=-1.954;QD=9.69;ReadPosRankSum=1.749;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:4,208:212:99:2087,227,0 chrII 428059 . G A 2254 SnpCluster AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=10.73;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:2287,249,0 chrII 428060 . C T 2360 SnpCluster AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=11.13;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:2393,264,0 chrII 428064 . G T 2546 SnpCluster AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=5.3697;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=10.65;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:2579,282,0 chrII 428982 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.19;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3694,402,0 chrII 429006 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.87;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3715,414,0 chrII 429084 . A G 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=137;Dels=0.00;FS=2.319;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.476;QD=18.17;ReadPosRankSum=3.748;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:5,132:137:99:2522,285,0 chrII 429131 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.2589;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.45;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1952,210,0 chrII 429267 . A G 206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.4490;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-2.178;QD=2.68;ReadPosRankSum=2.178;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:2,16:77:27:239,27,0 chrII 429555 . C A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.46;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3496,396,0 chrII 429746 . A G 5181.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.0855;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=1;QD=23.13;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5181,606,0 chrII 430040 . G A 5561.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.75;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5561,627,0 chrII 430055 . C T 5250.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.37;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:5250,570,0 chrII 430067 . A G 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=269;Dels=0.00;FS=12.844;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-1.131;QD=18.73;ReadPosRankSum=2.929;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:3,266:269:99:5039,561,0 chrII 431229 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.452;QD=20.73;ReadPosRankSum=2.411;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4022,465,0 chrII 431273 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.24;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3647,411,0 chrII 431663 . G A 4905.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.6010;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.65;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4905,525,0 chrII 431703 . C T 4768.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.15;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4768,516,0 chrII 431781 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.70;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2810,309,0 chrII 431789 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.73;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2624,297,0 chrII 432022 . A T 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.01;FS=3.153;HaplotypeScore=6.7193;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.643;QD=21.01;ReadPosRankSum=1.704;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2659,285,0 chrII 432025 . T C 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=3.023;HaplotypeScore=6.2234;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-1.722;QD=20.05;ReadPosRankSum=2.351;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2539,285,0 chrII 432329 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=176;Dels=0.00;FS=2.796;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.490;QD=22.40;ReadPosRankSum=2.421;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:3943,438,0 chrII 432356 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.96;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4064,465,0 chrII 432387 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=6.217;HaplotypeScore=11.7841;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.902;QD=21.48;ReadPosRankSum=2.418;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3373,387,0 chrII 432497 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.05;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,162:167:99:3850,423,0 chrII 432659 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.5972;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.68;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3694,420,0 chrII 432767 . C T 4620.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.9684;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.19;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4620,507,0 chrII 432821 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.60;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4225,465,0 chrII 432848 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=165;Dels=0.00;FS=6.155;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.292;QD=20.15;ReadPosRankSum=2.240;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3324,387,0 chrII 432851 . G T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.28;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3404,375,0 chrII 432974 . G T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.74;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4298,486,0 chrII 433097 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.76;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2400,270,0 chrII 433196 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.36;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2515,276,0 chrII 433232 . C A 2911 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.10;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2944,324,0 chrII 433272 . T C 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=141;Dels=0.00;FS=2.834;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.479;QD=23.77;ReadPosRankSum=2.415;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3351,378,0 chrII 433856 . G A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.44;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3666,414,0 chrII 434210 . C A 2238 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2271,249,0 chrII 434430 . A T 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=4.992;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.943;QD=22.59;ReadPosRankSum=1.595;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2315,255,0 chrII 434484 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.11;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1722,201,0 chrII 435236 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.04;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4038,450,0 chrII 435650 . T C 3649.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0570;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.46;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3649,408,0 chrII 435669 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.97;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3460,381,0 chrII 435951 . A C 2304 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.81;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2337,264,0 chrII 436119 . T C 2326 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2359,273,0 chrII 436236 . T A 2670 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6839;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.25;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2703,297,0 chrII 436888 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=20.19;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2294,249,0 chrII 436893 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=97.6524;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=19.54;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2241,243,0 chrII 437154 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.28;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3632,405,0 chrII 437586 . T C 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=129;Dels=0.00;FS=5.989;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.727;QD=23.88;ReadPosRankSum=2.930;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3114,348,0 chrII 437703 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.351;QD=22.78;ReadPosRankSum=1.682;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3200,357,0 chrII 437742 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.259;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.938;QD=22.15;ReadPosRankSum=1.708;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3222,357,0 chrII 437754 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.08;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3234,357,0 chrII 437995 . T C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.307;QD=23.05;ReadPosRankSum=1.699;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2476,285,0 chrII 438190 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0065;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.17;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3004,339,0 chrII 438582 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.463;QD=23.60;ReadPosRankSum=1.706;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3124,354,0 chrII 438811 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.80;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3523,375,0 chrII 438816 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.237;QD=21.32;ReadPosRankSum=1.613;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3167,351,0 chrII 438954 . T G 2540 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2573,291,0 chrII 439035 . T C 2006 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.57;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2039,228,0 chrII 439080 . T A 2776 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.24;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2809,306,0 chrII 439191 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1717,189,0 chrII 439382 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1668,183,0 chrII 439486 . T C 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=78;Dels=0.00;FS=2.748;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.208;QD=23.97;ReadPosRankSum=2.386;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1903,207,0 chrII 440337 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.513;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.271;QD=22.31;ReadPosRankSum=1.651;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2889,336,0 chrII 440636 . C G 2707 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2740,315,0 chrII 440773 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3456,375,0 chrII 440811 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.93;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3174,354,0 chrII 441384 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,143:148:99:3366,372,0 chrII 441565 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.9765;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.94;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4212,477,0 chrII 442031 . G C 3875.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.65;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3875,453,0 chrII 442040 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.445;QD=22.13;ReadPosRankSum=1.712;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3873,426,0 chrII 442059 . G C 4124.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.72;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4124,456,0 chrII 442136 . C T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.42;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4052,450,0 chrII 442181 . C G 4030.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.0413;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.71;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4030,444,0 chrII 442233 . C A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.59;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4179,453,0 chrII 442249 . G A 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=3.696;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.506;QD=21.76;ReadPosRankSum=1.148;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3916,426,0 chrII 442711 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=106;Dels=0.00;FS=2.727;HaplotypeScore=8.1199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.551;QD=22.56;ReadPosRankSum=2.403;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2424,273,0 chrII 442773 . A T 2644 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2677,300,0 chrII 442819 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2756,300,0 chrII 442879 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2383,258,0 chrII 443759 . G C 1889 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1922,219,0 chrII 444175 . T G 2110 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.58;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2143,240,0 chrII 444181 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=16.97;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2036,228,0 chrII 444205 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1101;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.56;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2483,279,0 chrII 444343 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.08;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2246,249,0 chrII 444358 . T A 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=113;Dels=0.00;FS=2.594;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.595;QD=19.33;ReadPosRankSum=2.883;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2217,252,0 chrII 444564 . A G 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=140;Dels=0.00;FS=6.180;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.864;QD=22.31;ReadPosRankSum=2.396;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3157,345,0 chrII 444664 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.66;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3066,336,0 chrII 444760 . A G 2973 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.06;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3006,339,0 chrII 444774 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=158;Dels=0.00;FS=3.032;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.528;QD=19.27;ReadPosRankSum=2.418;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3077,348,0 chrII 444887 . C A 2619 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.77;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2652,300,0 chrII 445482 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7574;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.56;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2884,318,0 chrII 445521 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.02;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2895,312,0 chrII 445593 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.25;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2547,276,0 chrII 445614 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.01;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2214,255,0 chrII 445731 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.17;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2959,318,0 chrII 445764 . C T 2635 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.14;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2668,291,0 chrII 445794 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.3415;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.42;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2860,321,0 chrII 446007 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=182;Dels=0.00;FS=3.576;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.289;QD=21.10;ReadPosRankSum=1.655;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3841,441,0 chrII 446407 . A C 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.996;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.185;QD=22.48;ReadPosRankSum=1.654;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3045,342,0 chrII 447264 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.418;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.944;QD=21.30;ReadPosRankSum=1.708;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3121,363,0 chrII 447420 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.3021;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.97;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2382,270,0 chrII 447949 . C A 2604 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.17;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2637,291,0 chrII 448135 . G A 2627 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.88;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2660,300,0 chrII 448182 . T C 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.688;QD=20.18;ReadPosRankSum=1.708;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2979,339,0 chrII 448188 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.175;QD=18.43;ReadPosRankSum=1.666;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2964,345,0 chrII 448816 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=198;Dels=0.00;FS=4.105;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.212;QD=21.15;ReadPosRankSum=1.714;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,192:198:99:4188,486,0 chrII 448827 . T C 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=218;Dels=0.00;FS=2.577;HaplotypeScore=16.1563;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.130;QD=20.32;ReadPosRankSum=2.404;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4430,498,0 chrII 449152 . T A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.08;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3773,426,0 chrII 449416 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=100;Dels=0.00;FS=9.113;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.236;QD=21.52;ReadPosRankSum=2.201;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2185,246,0 chrII 449588 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.51;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2549,288,0 chrII 450377 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=16.7669;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.181;QD=22.63;ReadPosRankSum=1.686;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,150:155:99:3507,393,0 chrII 450938 . T C 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=2.869;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.448;QD=23.27;ReadPosRankSum=2.408;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2779,315,0 chrII 451124 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4386;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.92;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3332,360,0 chrII 451175 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.65;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4142,453,0 chrII 451279 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3538,387,0 chrII 451343 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.45;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4108,459,0 chrII 451373 . G A 4847.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.64;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4847,525,0 chrII 451403 . G A 5087.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.7919;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.23;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5087,552,0 chrII 451502 . G A 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=138;Dels=0.00;FS=3.206;HaplotypeScore=12.4976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.274;QD=20.07;ReadPosRankSum=-0.942;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2803,321,0 chrII 451813 . A G 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.207;DP=209;Dels=0.00;FS=9.153;HaplotypeScore=21.4299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.344;QD=22.06;ReadPosRankSum=3.393;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:4,203:209:99:4611,516,0 chrII 451982 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2902,312,0 chrII 452218 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=7.2649;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.98;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1835,207,0 chrII 452408 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=17.04;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1294,141,0 chrII 452576 . T C 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.353;QD=21.83;ReadPosRankSum=2.233;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3045,351,0 chrII 452891 . G A 5737.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.04;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5737,619,0 chrII 453095 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.10;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3271,360,0 chrII 453417 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=21.00;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1587,171,0 chrII 453426 . T G 1599 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.74;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1632,189,0 chrII 453575 . C A 1789 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=16.88;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1822,201,0 chrII 453576 . T A 1829 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=107;Dels=0.00;FS=9.280;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-1.878;QD=17.09;ReadPosRankSum=2.840;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1862,204,0 chrII 453581 . G A 1668 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=15.59;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1701,195,0 chrII 453654 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=117.7362;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.150;QD=19.81;ReadPosRankSum=1.678;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2589,291,0 chrII 453655 . T C 2527 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=116.9475;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.44;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2560,291,0 chrII 453704 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.41;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2727,303,0 chrII 454122 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.20;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3434,399,0 chrII 454207 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=4.177;HaplotypeScore=12.7403;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.732;QD=21.03;ReadPosRankSum=1.688;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3322,390,0 chrII 454272 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=189;Dels=0.00;FS=4.072;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.614;QD=21.94;ReadPosRankSum=1.714;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4147,462,0 chrII 454336 . T C 5188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.0214;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.107;QD=23.69;ReadPosRankSum=1.716;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:5188,585,0 chrII 454401 . G C 4802.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.2461;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.76;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4802,543,0 chrII 454467 . T G 4118.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.09;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4118,465,0 chrII 454488 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.08;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4343,489,0 chrII 454566 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=178;Dels=0.00;FS=2.751;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.297;QD=21.69;ReadPosRankSum=2.394;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3860,435,0 chrII 454753 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.067;QD=22.92;ReadPosRankSum=1.710;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3553,399,0 chrII 454884 . T C 2668 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.34;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2701,315,0 chrII 455204 . C T 10730.01 filter AC=2;AF=1.00;AN=2;DP=437;Dels=0.00;FS=0.000;HaplotypeScore=32.5578;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=24.55;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,437:437:99:10730,1171,0 chrII 455272 . A G 1549.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.690;DP=875;Dels=0.00;FS=282.421;HaplotypeScore=29.1080;MLEAC=1;MLEAF=0.500;MQ=45.35;MQ0=0;MQRankSum=-10.936;QD=1.77;ReadPosRankSum=-7.650;SB=-3.355e+03 GT:AD:DP:GQ:PL 0/1:302,571:875:99:1579,0,5273 chrII 455563 . T C 5702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=278;Dels=0.00;FS=2.840;HaplotypeScore=25.8251;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.084;QD=20.51;ReadPosRankSum=2.414;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:2,276:278:99:5702,651,0 chrII 455916 . C T 5549.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=21.1370;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.63;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5549,627,0 chrII 456385 . A G 5637.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=17.3742;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.89;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5637,624,0 chrII 456431 . C G 5102.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.9723;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5102,564,0 chrII 456493 . C G 4131.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6800;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.86;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4131,468,0 chrII 457014 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.1712;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.94;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2546,282,0 chrII 457048 . A G 2490 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.15;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2523,294,0 chrII 457101 . A G 2529 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.91;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2562,297,0 chrII 457215 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.09;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1822,198,0 chrII 457395 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.39;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2466,270,0 chrII 457416 . T C 2287 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.37;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2320,258,0 chrII 457610 . G C 3084 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.54;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3117,354,0 chrII 457769 . C A 3162 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=15.6866;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.43;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3195,345,0 chrII 457802 . G T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.2913;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.48;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3394,378,0 chrII 457818 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.12;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3440,381,0 chrII 457827 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.60;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3502,393,0 chrII 458104 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.3674;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.59;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3811,414,0 chrII 458640 . G C 3793.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.99;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,160:165:99:3793,426,0 chrII 458701 . G T 3006 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.47;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3039,330,0 chrII 458748 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.37;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3716,408,0 chrII 458800 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=20.91;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3430,384,0 chrII 458813 . G C 3071 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=19.44;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3104,348,0 chrII 458827 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.75;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2837,309,0 chrII 458835 . G T 2794 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.40;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2827,303,0 chrII 458919 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.41;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3954,426,0 chrII 459048 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=2.903;HaplotypeScore=13.5810;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.961;QD=21.71;ReadPosRankSum=2.281;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3202,360,0 chrII 459093 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=3.040;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.610;QD=23.69;ReadPosRankSum=2.379;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3293,378,0 chrII 459536 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.8439;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.68;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2777,303,0 chrII 459585 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.63;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3043,342,0 chrII 459961 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.12;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4115,450,0 chrII 460258 . C A 702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.935;DP=89;Dels=0.01;FS=2.039;HaplotypeScore=75.2631;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;MQRankSum=-0.614;QD=7.89;ReadPosRankSum=-7.912;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:35,53:88:81:735,81,0 chrII 460340 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=4.346;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=1.579;QD=21.79;ReadPosRankSum=1.707;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2997,330,0 chrII 460385 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=24.58;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2810,300,0 chrII 460459 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=24.06;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2968,312,0 chrII 460470 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=21.90;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2858,318,0 chrII 460520 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.25;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2909,318,0 chrII 460561 . A G 3003 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.24;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3036,339,0 chrII 460566 . A G 2744 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.11;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2777,312,0 chrII 460668 . T C 2946 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.66;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2979,333,0 chrII 460910 . T C 4786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=3.437;HaplotypeScore=9.6011;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.845;QD=23.46;ReadPosRankSum=1.698;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4786,537,0 chrII 461298 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.4319;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.86;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4613,528,0 chrII 461507 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.30;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3572,390,0 chrII 461559 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.85;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2912,321,0 chrII 461718 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2342,264,0 chrII 461802 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.19;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4337,477,0 chrII 461852 . C G 4280.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4280,474,0 chrII 461887 . G C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.81;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3424,399,0 chrII 462229 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.30;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2285,252,0 chrII 462522 . G A 937 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=14.64;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:970,108,0 chrII 462556 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.24;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:899,99,0 chrII 462587 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1124,123,0 chrII 462944 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=7.108;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.267;QD=23.99;ReadPosRankSum=1.709;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3598,402,0 chrII 462993 . C T 4485.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7764;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.73;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4485,498,0 chrII 463188 . A C 5456.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=7.2807;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.45;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5456,612,0 chrII 463360 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4407,477,0 chrII 463789 . T G 5834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=271;Dels=0.00;FS=6.784;HaplotypeScore=19.1663;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=1.992;QD=21.53;ReadPosRankSum=2.349;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:2,266:271:99:5834,672,0 chrII 463842 . T C 5558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=264;Dels=0.00;FS=3.024;HaplotypeScore=17.2219;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=2.120;QD=21.05;ReadPosRankSum=2.431;SB=-3.154e+03 GT:AD:DP:GQ:PL 1/1:2,259:264:99:5558,648,0 chrII 464075 . G A 100.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.76;MQ0=0;MQRankSum=0.747;QD=12.60;ReadPosRankSum=-0.747;SB=-9.790e-01 GT:AD:DP:GQ:PL 0/1:1,7:8:0:129,0,0 chrII 464079 . T C 178.76 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.634;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.2641;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;MQRankSum=-0.796;QD=1.22;ReadPosRankSum=2.270;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:5,140:146:6:210,6,0 chrII 464085 . T C 455 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.472;DP=189;Dels=0.01;FS=7.448;HaplotypeScore=20.4642;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;MQRankSum=-2.633;QD=2.41;ReadPosRankSum=2.825;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:6,181:188:57:488,57,0 chrII 464151 . C T 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;MQRankSum=-0.475;QD=7.26;ReadPosRankSum=1.034;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:1840,219,0 chrII 464160 . A T 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=230;Dels=0.00;FS=6.367;HaplotypeScore=10.9359;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-1.098;QD=7.33;ReadPosRankSum=2.168;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:2,216:230:99:1720,204,0 chrII 464184 . C T 526.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.027;DP=185;Dels=0.00;FS=66.188;HaplotypeScore=47.9351;MLEAC=1;MLEAF=0.500;MQ=39.37;MQ0=1;MQRankSum=-2.045;QD=2.84;ReadPosRankSum=-0.193;SB=-9.810e+02 GT:AD:DP:GQ:PL 0/1:63,122:185:99:556,0,657 chrII 464217 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=12.7017;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=1;QD=11.37;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:2137,240,0 chrII 464241 . A T 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.966;DP=290;Dels=0.02;FS=78.483;HaplotypeScore=49.5481;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=1;MQRankSum=4.788;QD=10.52;ReadPosRankSum=3.895;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:32,253:285:99:3084,158,0 chrII 464259 . A T 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.894;DP=334;Dels=0.02;FS=42.867;HaplotypeScore=67.7085;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=2;MQRankSum=5.049;QD=13.22;ReadPosRankSum=5.138;SB=-3.290e+03 GT:AD:DP:GQ:PL 1/1:20,305:326:99:4416,468,0 chrII 464271 . A T 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.623;DP=358;Dels=0.00;FS=6.461;HaplotypeScore=13.0642;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=1;MQRankSum=4.156;QD=13.43;ReadPosRankSum=7.863;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:40,318:358:99:4809,368,0 chrII 464330 . C T 7020.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=13.2411;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=1;QD=18.28;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,384:384:99:7020,795,0 chrII 464655 . A G 3304.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.63;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3304,369,0 chrII 464736 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1124;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.970;QD=23.50;ReadPosRankSum=1.663;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3548,396,0 chrII 465012 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=199;Dels=0.00;FS=6.683;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.011;QD=22.99;ReadPosRankSum=2.388;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4575,513,0 chrII 465156 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=210;Dels=0.00;FS=3.827;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.841;QD=22.16;ReadPosRankSum=1.716;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4653,516,0 chrII 465417 . A G 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.8143;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=1.023;QD=21.74;ReadPosRankSum=1.716;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,219:223:99:4848,552,0 chrII 465471 . T C 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=241;Dels=0.00;FS=3.328;HaplotypeScore=11.7715;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=1.200;QD=21.16;ReadPosRankSum=1.689;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5099,588,0 chrII 465657 . G C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.38;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3525,399,0 chrII 465661 . G A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.33;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3416,384,0 chrII 465714 . T C 581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.614;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.6640;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=-1.464;QD=3.77;ReadPosRankSum=1.569;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:47:614,47,0 chrII 465795 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=12.0608;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=16.95;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2491,270,0 chrII 465796 . G C 2367 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=12.8495;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=16.21;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2400,270,0 chrII 465870 . A T 2584 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=23.93;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2617,282,0 chrII 466266 . C T 4866.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=19.3139;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.85;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4866,540,0 chrII 466521 . C G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.01;FS=0.000;HaplotypeScore=9.2737;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=16.05;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:3675,417,0 chrII 466523 . C G 3662.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.5053;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=16.57;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:3662,417,0 chrII 466560 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=22.5834;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=14.58;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:2760,309,0 chrII 466698 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.71;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3387,381,0 chrII 467066 . C T 3019 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=126.6393;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.35;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3052,333,0 chrII 467353 . A C 5555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=244;Dels=0.00;FS=6.878;HaplotypeScore=21.2973;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.864;QD=22.77;ReadPosRankSum=2.429;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:2,238:244:99:5555,636,0 chrII 468345 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.025;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.5343;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.954;QD=22.22;ReadPosRankSum=1.937;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3144,334,0 chrII 468402 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.02;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3898,432,0 chrII 468870 . C T 4705.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.38;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4705,504,0 chrII 469086 . C T 5499.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.1385;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.01;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,234:239:99:5499,612,0 chrII 469119 . T C 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=211;Dels=0.00;FS=3.605;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.287;QD=20.81;ReadPosRankSum=1.601;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4391,513,0 chrII 469122 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.47;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4402,501,0 chrII 469344 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.35;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,151:156:99:3051,354,0 chrII 469374 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.37;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3583,393,0 chrII 469455 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=7.587;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.588;QD=21.61;ReadPosRankSum=1.669;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2410,270,0 chrII 469730 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1944,213,0 chrII 470150 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3858,432,0 chrII 470537 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.9704;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.88;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4209,453,0 chrII 470609 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.043;QD=21.49;ReadPosRankSum=1.698;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4363,507,0 chrII 470903 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.6680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4120,465,0 chrII 471378 . C A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.39;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3479,384,0 chrII 471407 . A C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.63;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,143:149:99:3256,375,0 chrII 471887 . C G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=18.9887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.81;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3626,414,0 chrII 472037 . G T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.75;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3812,423,0 chrII 472117 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1618;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.98;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3930,423,0 chrII 472738 . G A 4670.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.13;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4670,510,0 chrII 472853 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=205;Dels=0.00;FS=6.943;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.547;QD=21.50;ReadPosRankSum=2.389;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4408,507,0 chrII 473060 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.429;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.702;QD=20.36;ReadPosRankSum=1.713;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3766,432,0 chrII 473105 . G A 3902.01 SnpCluster AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.81;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3902,435,0 chrII 473108 . G C 3818.01 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.68;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:3818,429,0 chrII 473109 . C T 3818.01 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.68;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3818,423,0 chrII 473429 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=151;Dels=0.00;FS=3.796;HaplotypeScore=9.7865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.401;QD=22.81;ReadPosRankSum=1.159;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3444,387,0 chrII 473605 . T G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=0.512;QD=24.03;ReadPosRankSum=1.708;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3436,387,0 chrII 473996 . A G 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.664;DP=113;Dels=0.00;FS=5.901;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.664;QD=21.20;ReadPosRankSum=2.937;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:3,108:113:99:2429,270,0 chrII 474031 . A G 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=3.499;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.332;QD=21.11;ReadPosRankSum=1.695;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2017,234,0 chrII 474261 . T A 2651 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.46;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2684,294,0 chrII 474308 . T A 2699 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2732,294,0 chrII 474358 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3408,393,0 chrII 474402 . C A 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7712;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.713;QD=23.57;ReadPosRankSum=-0.590;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4219,477,0 chrII 475397 . C T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.3008;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.36;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4520,501,0 chrII 475550 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=3.302;HaplotypeScore=11.2758;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.620;QD=22.01;ReadPosRankSum=1.665;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3433,381,0 chrII 475856 . T C 5252.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.2498;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.35;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5252,594,0 chrII 475985 . C T 5436.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=23.0328;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.28;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5436,594,0 chrII 476530 . A G 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.740;DP=227;Dels=0.00;FS=13.387;HaplotypeScore=23.4859;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.004;QD=20.65;ReadPosRankSum=2.936;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:4,219:227:99:4688,537,0 chrII 476602 . T G 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.9616;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.025;QD=23.50;ReadPosRankSum=1.715;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4770,540,0 chrII 476950 . A C 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=6.1847;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-1.296;QD=17.55;ReadPosRankSum=1.709;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2701,321,0 chrII 476954 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.06;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2724,309,0 chrII 477015 . G T 78.51 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=119.7348;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=0.58;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:12:111,12,0 chrII 477199 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.79;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2175,243,0 chrII 477263 . G T 2446 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.84;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2479,279,0 chrII 477343 . A G 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.590;DP=96;Dels=0.00;FS=2.599;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-0.505;QD=16.92;ReadPosRankSum=2.590;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1657,189,0 chrII 477368 . C T 1085 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=14.47;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1118,123,0 chrII 477682 . G A 2937 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=21;MQRankSum=-1.188;QD=20.68;ReadPosRankSum=-1.532;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:11,129:142:99:2970,324,0 chrII 478432 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.17;MQ0=77;QD=0.28;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,77:80:6:54,6,0 chrII 478966 . T C 471.33 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.408;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.36;MQ0=102;MQRankSum=2.488;QD=3.68;ReadPosRankSum=-1.766;SB=-1.043e+02 GT:AD:DP:GQ:PL 1/1:47,80:128:14:504,14,0 chrII 479201 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.40;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1303,144,0 chrII 479516 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3291,372,0 chrII 479752 . G A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4018,435,0 chrII 480693 . T C 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=101;Dels=0.00;FS=6.510;HaplotypeScore=6.6114;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.792;QD=22.50;ReadPosRankSum=2.328;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2306,261,0 chrII 481670 . G A 4608.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.8513;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.59;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4608,507,0 chrII 481941 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.33;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3822,411,0 chrII 481949 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.4603;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.111;QD=19.22;ReadPosRankSum=1.506;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3556,384,0 chrII 482720 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2728,294,0 chrII 482984 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2820,327,0 chrII 483713 . G T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.67;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3605,393,0 chrII 483723 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=20.15;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2995,339,0 chrII 483726 . T C 2880 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=19.86;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2913,327,0 chrII 483785 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.966;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.894;QD=19.89;ReadPosRankSum=1.710;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3155,354,0 chrII 483804 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=2.856;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.093;QD=21.11;ReadPosRankSum=2.421;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3631,414,0 chrII 483939 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=160;Dels=0.00;FS=6.103;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-1.006;QD=19.53;ReadPosRankSum=2.768;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3158,357,0 chrII 483944 . A G 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.176;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.411;QD=19.20;ReadPosRankSum=1.667;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3125,354,0 chrII 484110 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=160;Dels=0.00;FS=10.525;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.045;QD=19.04;ReadPosRankSum=2.930;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3080,351,0 chrII 484159 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.92;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3553,390,0 chrII 485003 . A C 2688 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.34;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2721,303,0 chrII 485258 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=193;Dels=0.00;FS=2.946;HaplotypeScore=11.0137;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.546;QD=22.82;ReadPosRankSum=2.360;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4405,495,0 chrII 485567 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.16;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3551,390,0 chrII 485863 . C T 2755 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.68;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2788,312,0 chrII 486416 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3130,342,0 chrII 486628 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3698,405,0 chrII 486878 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.32;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1611,177,0 chrII 486968 . A T 362.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DP=110;Dels=0.00;FS=17.329;HaplotypeScore=32.5575;MLEAC=1;MLEAF=0.500;MQ=42.53;MQ0=0;MQRankSum=0.243;QD=3.29;ReadPosRankSum=-6.191;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:85,25:110:99:392,0,557 chrII 486976 . G T 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;DP=107;Dels=0.00;FS=10.283;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=43.15;MQ0=0;MQRankSum=-0.380;QD=1.05;ReadPosRankSum=-6.049;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,16:107:99:142,0,677 chrII 486977 . T C 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.612;DP=107;Dels=0.00;FS=7.999;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=43.15;MQ0=0;MQRankSum=-0.857;QD=0.94;ReadPosRankSum=-5.792;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,15:107:99:131,0,712 chrII 487183 . A T 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.584;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.3437;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.140;QD=23.31;ReadPosRankSum=-0.785;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2760,278,0 chrII 487454 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.3017;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.39;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3470,390,0 chrII 487661 . C G 7607.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.98;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,330:331:99:7607,896,0 chrII 487781 . T G 4989.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4989,549,0 chrII 488751 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1364,147,0 chrII 488899 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1729,186,0 chrII 489241 . A G 6430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=277;Dels=0.00;FS=2.355;HaplotypeScore=20.6644;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-2.189;QD=23.21;ReadPosRankSum=2.204;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:3,273:277:99:6430,700,0 chrII 489580 . T C 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.6811;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.387;QD=21.23;ReadPosRankSum=1.663;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5329,606,0 chrII 489622 . G A 6522.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.26;SB=-3.395e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6522,714,0 chrII 489703 . T C 6847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=314;Dels=0.00;FS=7.703;HaplotypeScore=32.6991;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.729;QD=21.81;ReadPosRankSum=2.370;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:2,308:314:99:6847,765,0 chrII 489778 . C T 5788.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=31.1694;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.28;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5788,636,0 chrII 489897 . A G 6929.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=19.4859;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.41;SB=-3.295e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6929,774,0 chrII 490532 . T C 4762.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.74;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4762,549,0 chrII 490619 . A C 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=6.021;HaplotypeScore=4.7262;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.572;QD=21.15;ReadPosRankSum=1.716;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4504,510,0 chrII 491476 . G A 5208.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.57;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5208,567,0 chrII 492001 . C A 2963 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.02;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2996,324,0 chrII 492025 . A C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.6878;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.52;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3427,390,0 chrII 492196 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.85;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3409,399,0 chrII 492226 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=139;Dels=0.00;FS=7.880;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-2.004;QD=19.27;ReadPosRankSum=2.325;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2712,324,0 chrII 492334 . G C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.97;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3845,444,0 chrII 492887 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9072;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=18.98;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2520,285,0 chrII 492890 . T G 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4711;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;MQRankSum=-1.145;QD=18.90;ReadPosRankSum=1.537;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2395,273,0 chrII 492899 . G T 2269 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.01;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2302,255,0 chrII 493122 . T C 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.283;QD=22.05;ReadPosRankSum=1.701;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4852,537,0 chrII 493123 . T C 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.504;QD=21.28;ReadPosRankSum=1.653;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4682,534,0 chrII 493536 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=119;Dels=0.00;FS=8.241;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.115;QD=20.79;ReadPosRankSum=2.408;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2507,288,0 chrII 493755 . A G 2823 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2856,330,0 chrII 493858 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.84;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2572,279,0 chrII 493879 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.169;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.012;QD=19.60;ReadPosRankSum=1.707;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2758,312,0 chrII 493942 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5387;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.70;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3532,381,0 chrII 494538 . T A 2505 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.37;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2538,270,0 chrII 494596 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3157,345,0 chrII 494992 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=153;Dels=0.00;FS=3.030;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.406;QD=22.56;ReadPosRankSum=2.417;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3452,384,0 chrII 495085 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=165;Dels=0.00;FS=7.972;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.387;QD=22.26;ReadPosRankSum=2.404;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3673,411,0 chrII 495218 . T C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=142;Dels=0.00;FS=6.691;HaplotypeScore=12.8451;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.532;QD=21.80;ReadPosRankSum=2.415;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3129,351,0 chrII 495468 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.06;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3254,351,0 chrII 495627 . C T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.36;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4133,447,0 chrII 495703 . G A 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.278;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.533;QD=22.34;ReadPosRankSum=0.085;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2758,284,0 chrII 495960 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.50;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3354,366,0 chrII 495979 . C G 2751 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.59;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2784,327,0 chrII 496048 . T C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.565;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.316;QD=20.02;ReadPosRankSum=1.704;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2535,288,0 chrII 496540 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=2.888;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.239;QD=23.08;ReadPosRankSum=2.352;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2941,327,0 chrII 497133 . A G 5019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=225;Dels=0.00;FS=4.068;HaplotypeScore=15.1248;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.780;QD=22.31;ReadPosRankSum=1.670;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,221:225:99:5019,582,0 chrII 497477 . A T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4179,456,0 chrII 497645 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.5162;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.637;QD=22.35;ReadPosRankSum=1.710;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3464,396,0 chrII 497990 . T C 5904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=247;Dels=0.00;FS=2.549;HaplotypeScore=20.9523;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-2.074;QD=23.90;ReadPosRankSum=2.931;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:3,243:247:99:5904,675,0 chrII 498089 . C T 4702.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.39;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4702,510,0 chrII 498133 . A C 4434.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.53;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4434,501,0 chrII 498203 . G A 5488.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=24.2977;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.33;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,268:270:99:5488,606,0 chrII 498315 . A T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.0828;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.72;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3812,432,0 chrII 498348 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9375;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.14;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3340,360,0 chrII 498359 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.64;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3116,339,0 chrII 498404 . T A 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=4.494;HaplotypeScore=8.0802;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.390;QD=18.95;ReadPosRankSum=1.664;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2913,327,0 chrII 498575 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.730;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-1.155;QD=23.45;ReadPosRankSum=1.660;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3424,381,0 chrII 498596 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.32;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3134,342,0 chrII 498623 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=22.30;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2820,306,0 chrII 498674 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=21.18;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3040,348,0 chrII 498695 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=22.00;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3201,348,0 chrII 498697 . T C 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.570;QD=20.68;ReadPosRankSum=1.686;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3114,348,0 chrII 498782 . T C 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=6.410;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.841;QD=20.29;ReadPosRankSum=1.699;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2163,246,0 chrII 498905 . A G 2481 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=23.19;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2514,279,0 chrII 498923 . G C 1766 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=20.53;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1799,213,0 chrII 498935 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=20.40;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1400,159,0 chrII 498959 . G A 794 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.89;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:827,93,0 chrII 499010 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.41;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1082,117,0 chrII 499037 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.42;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1378,150,0 chrII 499049 . T A 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=5.772;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.611;QD=22.85;ReadPosRankSum=1.681;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1587,171,0 chrII 499070 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.91;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1523,174,0 chrII 499374 . C T 131.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=14.57;SB=-8.163e+01 GT:AD:DP:GQ:PL 1/1:0,8:9:18:164,18,0 chrII 499401 . A C 326 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.37;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:42:359,42,0 chrII 499427 . T C 362 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.05;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:45:395,45,0 chrII 499487 . C T 746 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.06;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:779,87,0 chrII 499580 . A G 834 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.85;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:867,96,0 chrII 499601 . T A 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.948;QD=21.49;ReadPosRankSum=1.667;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1172,129,0 chrII 499985 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.08;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4570,495,0 chrII 500498 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.85;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3838,432,0 chrII 500795 . G T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.77;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3831,420,0 chrII 500843 . T A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.57;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4101,453,0 chrII 500915 . A T 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=176;Dels=0.00;FS=11.939;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.234;QD=21.40;ReadPosRankSum=2.949;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3766,423,0 chrII 501073 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=172;Dels=0.00;FS=3.165;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.826;QD=23.67;ReadPosRankSum=1.672;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4072,456,0 chrII 501201 . A G 5461.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.85;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5461,615,0 chrII 501490 . A G 4745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.089;DP=215;Dels=0.00;FS=4.689;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.127;QD=22.07;ReadPosRankSum=4.049;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:6,208:215:99:4745,534,0 chrII 501576 . A T 4896.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.77;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4896,522,0 chrII 501677 . C A 2969 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6998;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=15.88;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3002,342,0 chrII 501680 . T A 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.604;DP=180;Dels=0.00;FS=10.889;HaplotypeScore=6.2696;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;MQRankSum=-1.045;QD=15.66;ReadPosRankSum=3.377;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:5,175:180:99:2852,321,0 chrII 501897 . G A 4811.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.48;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4811,534,0 chrII 502305 . A T 4531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.9135;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.384;QD=23.85;ReadPosRankSum=1.677;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4531,495,0 chrII 502581 . T C 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=122;Dels=0.00;FS=3.036;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.837;QD=19.98;ReadPosRankSum=2.349;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2471,282,0 chrII 502627 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.74;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2625,294,0 chrII 503196 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.64;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2478,267,0 chrII 503310 . G C 2820 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.90;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2853,321,0 chrII 503402 . A G 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=5.371;HaplotypeScore=13.8797;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.810;QD=23.07;ReadPosRankSum=1.704;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2940,330,0 chrII 504535 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=23.26;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2243,249,0 chrII 504568 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=22.65;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2298,249,0 chrII 504587 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=21.42;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2239,240,0 chrII 504755 . T C 4457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.3795;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.253;QD=23.21;ReadPosRankSum=1.714;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4457,504,0 chrII 504973 . G A 5939.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=9.5759;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.33;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5939,645,0 chrII 504994 . T C 5620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=259;Dels=0.00;FS=3.547;HaplotypeScore=7.4493;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.913;QD=21.70;ReadPosRankSum=1.719;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:1,257:259:99:5620,627,0 chrII 505129 . G A 4350.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.75;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4350,480,0 chrII 505294 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=17.02;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2262,246,0 chrII 505298 . A G 2192 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.12;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2225,255,0 chrII 505396 . T A 1088 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=17.6743;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=14.51;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1121,123,0 chrII 505399 . A T 938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.029;DP=65;Dels=0.00;FS=2.367;HaplotypeScore=28.4913;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=1.564;QD=14.43;ReadPosRankSum=1.389;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:8,56:65:99:971,108,0 chrII 505431 . G A 247 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=7.97;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:280,33,0 chrII 506138 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3726,405,0 chrII 506237 . G C 2839 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.9732;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.84;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2872,333,0 chrII 506715 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5390;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.459;QD=24.14;ReadPosRankSum=1.687;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3669,405,0 chrII 506915 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3723,399,0 chrII 507219 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=2.638;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.837;QD=21.66;ReadPosRankSum=2.369;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2675,303,0 chrII 507323 . A T 2702 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2735,297,0 chrII 507737 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.694;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.631;QD=21.88;ReadPosRankSum=1.698;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2287,261,0 chrII 507764 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.50;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1993,219,0 chrII 507796 . T C 1957 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.30;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1990,225,0 chrII 507938 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.74;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2148,231,0 chrII 508130 . A G 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=3.821;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.074;QD=24.28;ReadPosRankSum=1.658;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2315,258,0 chrII 508385 . T A 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.984;QD=20.92;ReadPosRankSum=1.677;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2648,309,0 chrII 508421 . C A 2707 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.01;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2740,303,0 chrII 508712 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3409,387,0 chrII 509108 . T C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.33;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3394,393,0 chrII 509291 . T C 3417.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3417,390,0 chrII 509360 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.06;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3485,387,0 chrII 509507 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.25;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3089,336,0 chrII 509627 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.641;DP=144;Dels=0.00;FS=10.589;HaplotypeScore=17.6179;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=2.275;QD=21.95;ReadPosRankSum=2.923;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3194,366,0 chrII 509690 . G T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.59;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3295,360,0 chrII 509720 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=3.293;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.085;QD=22.90;ReadPosRankSum=1.587;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3275,369,0 chrII 510433 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.78;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3995,438,0 chrII 510710 . A T 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=151;Dels=0.00;FS=2.242;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.980;QD=24.53;ReadPosRankSum=1.633;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3704,408,0 chrII 512166 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.54;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3359,360,0 chrII 512167 . T C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=150;Dels=0.00;FS=2.829;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=0.635;QD=20.99;ReadPosRankSum=2.417;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3181,360,0 chrII 512684 . T C 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=195;Dels=0.00;FS=5.890;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.218;QD=23.04;ReadPosRankSum=2.964;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4492,516,0 chrII 512888 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=4.692;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.706;QD=22.07;ReadPosRankSum=1.689;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3575,405,0 chrII 513202 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.2188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.178;QD=22.19;ReadPosRankSum=1.681;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3095,354,0 chrII 513337 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=3.578;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.235;QD=21.60;ReadPosRankSum=1.643;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3369,390,0 chrII 513641 . A C 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.382;QD=21.58;ReadPosRankSum=1.693;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1975,225,0 chrII 513994 . A G 2268 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.62;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2301,264,0 chrII 514077 . T C 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.310;QD=20.41;ReadPosRankSum=1.648;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1707,195,0 chrII 514468 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2092,225,0 chrII 514671 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.05;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3185,342,0 chrII 514746 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.11;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2207,249,0 chrII 514842 . G T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.8689;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.14;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4030,441,0 chrII 514893 . A G 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=183;Dels=0.00;FS=11.551;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.357;QD=22.42;ReadPosRankSum=2.962;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:4103,474,0 chrII 515049 . A G 4693.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.7481;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.00;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4693,525,0 chrII 515130 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.15;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3913,438,0 chrII 515157 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.97;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3889,426,0 chrII 515211 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.52;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3406,384,0 chrII 515316 . C G 3066 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7342;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.06;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3099,345,0 chrII 515610 . T A 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=129;Dels=0.00;FS=6.116;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=2.242;QD=23.89;ReadPosRankSum=1.664;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3115,320,0 chrII 515762 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.45;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3354,363,0 chrII 515792 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=129;Dels=0.00;FS=2.050;HaplotypeScore=7.4114;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.404;QD=21.76;ReadPosRankSum=3.280;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:4,124:129:99:2840,315,0 chrII 515871 . G A 3406.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=0.896;QD=19.57;ReadPosRankSum=1.394;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3406,378,0 chrII 515876 . C T 3474.01 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=20.08;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3474,387,0 chrII 515878 . C A 3349.01 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=19.36;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3349,369,0 chrII 515879 . A G 3311.01 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=19.36;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3311,369,0 chrII 515936 . A C 3123 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=19.28;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3156,360,0 chrII 515987 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.53;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3176,342,0 chrII 515996 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.29;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2965,348,0 chrII 516344 . A G 6408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=266;Dels=0.00;FS=4.973;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.932;QD=24.09;ReadPosRankSum=1.706;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,263:266:99:6408,708,0 chrII 516567 . A G 5764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=273;Dels=0.00;FS=2.980;HaplotypeScore=11.3379;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.168;QD=21.11;ReadPosRankSum=2.377;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:2,268:273:99:5764,648,0 chrII 516590 . C T 6175.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.54;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:0,270:274:99:6175,681,0 chrII 516896 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6903;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.31;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3573,399,0 chrII 517291 . A C 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.695;QD=21.09;ReadPosRankSum=1.695;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2015,228,0 chrII 517356 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.68;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1880,204,0 chrII 517400 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.65;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1925,210,0 chrII 517455 . A G 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=6.484;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.876;QD=20.33;ReadPosRankSum=1.654;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1842,210,0 chrII 517470 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.11;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2004,225,0 chrII 517497 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.12;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1972,222,0 chrII 517631 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=128;Dels=0.00;FS=3.335;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.430;QD=21.13;ReadPosRankSum=-0.901;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2738,293,0 chrII 517826 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.36;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3271,354,0 chrII 518133 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2278,264,0 chrII 518217 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3186,357,0 chrII 518385 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3795,420,0 chrII 518451 . A C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3306,375,0 chrII 518569 . G A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3845,426,0 chrII 518619 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3828,435,0 chrII 518677 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.83;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3625,399,0 chrII 518730 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.81;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2912,315,0 chrII 518763 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.97;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3317,372,0 chrII 519005 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.09;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3081,339,0 chrII 519057 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.30;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3300,378,0 chrII 519060 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.75;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3506,387,0 chrII 519347 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.74;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4253,480,0 chrII 519354 . A C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.208;DP=231;Dels=0.00;FS=12.469;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.432;QD=17.77;ReadPosRankSum=3.407;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:4,224:231:99:4104,477,0 chrII 519405 . T C 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=241;Dels=0.00;FS=6.604;HaplotypeScore=18.2207;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.529;QD=19.51;ReadPosRankSum=2.419;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:2,237:241:99:4701,525,0 chrII 519453 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.62;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4259,474,0 chrII 519533 . A G 4509.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.55;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4509,504,0 chrII 519605 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.152;QD=21.74;ReadPosRankSum=1.714;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4153,474,0 chrII 519668 . A C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=154;Dels=0.00;FS=2.892;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.946;QD=22.73;ReadPosRankSum=2.417;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3500,393,0 chrII 519859 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.659;QD=23.17;ReadPosRankSum=1.683;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3290,366,0 chrII 520090 . C G 4099.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.25;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:4099,453,0 chrII 520147 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.61;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4307,465,0 chrII 520252 . C T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.65;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3827,414,0 chrII 520281 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=192;Dels=0.00;FS=1.884;HaplotypeScore=15.7046;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.172;QD=21.77;ReadPosRankSum=3.294;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:4,186:192:99:4179,468,0 chrII 520329 . G T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.51;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3688,417,0 chrII 520340 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.18;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3754,426,0 chrII 520387 . A G 2633 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=18.94;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2666,300,0 chrII 520395 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.1388;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=17.65;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2487,273,0 chrII 520461 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.94;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3389,381,0 chrII 520469 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.375;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.159;QD=19.63;ReadPosRankSum=1.573;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3435,384,0 chrII 520562 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=154;Dels=0.00;FS=2.610;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.233;QD=20.79;ReadPosRankSum=2.337;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3235,366,0 chrII 520587 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.97;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3094,339,0 chrII 520673 . T C 3035 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=21.22;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3068,342,0 chrII 520674 . T C 3105 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=21.87;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3138,342,0 chrII 520751 . A T 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.577;QD=20.95;ReadPosRankSum=1.700;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2296,252,0 chrII 521061 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2059,225,0 chrII 521285 . T C 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.423;QD=20.17;ReadPosRankSum=1.701;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2292,255,0 chrII 521578 . A G 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.112;QD=20.75;ReadPosRankSum=1.682;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2917,333,0 chrII 521820 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.4157;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.83;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3503,387,0 chrII 521902 . C G 2697 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.47;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2730,306,0 chrII 521976 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.29;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2290,252,0 chrII 522333 . C T 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.712;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=2.381;QD=21.68;ReadPosRankSum=-0.886;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1572,136,0 chrII 522440 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.02;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1802,201,0 chrII 522441 . A G 1746 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.19;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1779,201,0 chrII 522558 . T C 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.120;QD=24.68;ReadPosRankSum=2.951;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3529,393,0 chrII 522696 . T C 1636 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.25;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1669,189,0 chrII 522742 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3225,354,0 chrII 522774 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.19;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3340,378,0 chrII 522849 . C A 2093 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.78;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2126,234,0 chrII 522893 . C A 2240 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=25.45;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2273,243,0 chrII 522921 . A G 1928 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=23.51;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1961,222,0 chrII 523005 . C A 2501 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.28;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2534,276,0 chrII 523035 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.65;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2393,270,0 chrII 523100 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.49;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2777,297,0 chrII 523107 . T G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=118;Dels=0.00;FS=2.748;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.074;QD=20.55;ReadPosRankSum=2.387;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2458,282,0 chrII 523127 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.74;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2584,288,0 chrII 523146 . G C 2461 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.64;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,126:132:99:2494,288,0 chrII 523178 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.8537;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.38;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3197,348,0 chrII 523217 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=3.036;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.942;QD=23.99;ReadPosRankSum=1.712;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4126,459,0 chrII 523461 . G C 3317.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3317,381,0 chrII 523695 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.59;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3680,393,0 chrII 523893 . C A 5211.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.27;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5211,591,0 chrII 523926 . G C 4372.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.6355;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.72;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4372,510,0 chrII 523940 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.3164;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.097;QD=21.49;ReadPosRankSum=1.714;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4255,480,0 chrII 524025 . G A 4481.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.3264;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.34;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4481,495,0 chrII 524097 . G A 4824.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.76;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4824,525,0 chrII 524142 . C T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.28;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4539,495,0 chrII 524214 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.10;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3403,384,0 chrII 524262 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.08;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3149,354,0 chrII 524315 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.83;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2916,315,0 chrII 524415 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.26;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2580,276,0 chrII 524471 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.55;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2006,228,0 chrII 524475 . A G 1927 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.07;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1960,219,0 chrII 524659 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.10;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1932,213,0 chrII 524751 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.27;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2560,276,0 chrII 524916 . T A 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.979;DP=115;Dels=0.00;FS=2.875;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.230;QD=24.61;ReadPosRankSum=0.674;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2863,293,0 chrII 525014 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.9642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3003,333,0 chrII 525211 . G A 5615.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.6646;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.79;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5615,607,0 chrII 525483 . T A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.52;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3980,444,0 chrII 525492 . T A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.33;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3619,399,0 chrII 525674 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.81;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2890,318,0 chrII 526248 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.54;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2918,327,0 chrII 526512 . T C 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=131;Dels=0.00;FS=9.476;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.315;QD=18.56;ReadPosRankSum=2.412;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2464,285,0 chrII 526524 . A C 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.0622;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.794;QD=18.62;ReadPosRankSum=1.706;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2528,294,0 chrII 526839 . A T 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;DP=102;Dels=0.00;FS=3.734;HaplotypeScore=4.0916;MLEAC=1;MLEAF=0.500;MQ=54.56;MQ0=0;MQRankSum=-0.477;QD=0.33;ReadPosRankSum=-4.037;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:95,7:102:64:64,0,120 chrII 526840 . A T 125.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.662;DP=103;Dels=0.00;FS=3.760;HaplotypeScore=4.0916;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=0;MQRankSum=1.382;QD=1.21;ReadPosRankSum=4.226;SB=-7.800e+02 GT:AD:DP:GQ:PL 0/1:7,96:103:55:155,0,55 chrII 526931 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3424,375,0 chrII 527102 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.72;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3521,381,0 chrII 527371 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=4.488;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.988;QD=22.41;ReadPosRankSum=1.668;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3676,414,0 chrII 527601 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2905,318,0 chrII 527674 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.21;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3420,384,0 chrII 527703 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1614;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.93;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3213,351,0 chrII 527865 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=3.727;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-0.226;QD=23.38;ReadPosRankSum=1.676;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4325,489,0 chrII 528054 . G T 2541 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=19.25;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2574,279,0 chrII 528069 . T C 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=5.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;MQRankSum=-1.262;QD=17.71;ReadPosRankSum=1.707;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2512,285,0 chrII 528079 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=17.30;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2455,267,0 chrII 528090 . A C 2240 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=15.45;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2273,255,0 chrII 528108 . T C 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=5.302;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;MQRankSum=-1.009;QD=14.53;ReadPosRankSum=1.682;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2053,234,0 chrII 528212 . A G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.793;DP=112;Dels=0.00;FS=15.641;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.575;QD=20.18;ReadPosRankSum=3.922;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:6,106:112:99:2293,258,0 chrII 528238 . G A 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.475;QD=21.25;ReadPosRankSum=0.645;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2201,218,0 chrII 528240 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=20.59;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2133,240,0 chrII 528294 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.0562;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.78;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2525,273,0 chrII 528370 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.39;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2086,225,0 chrII 528419 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.70;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2643,288,0 chrII 528511 . C G 2461 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=20.34;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2494,288,0 chrII 528592 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=21.07;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2562,273,0 chrII 528775 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=10.73;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1364,153,0 chrII 529048 . A G 2733 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.7290;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.77;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2766,321,0 chrII 529298 . A G 3088 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.18;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3121,351,0 chrII 529327 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.52;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3262,354,0 chrII 529501 . T A 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4777;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.200;QD=21.07;ReadPosRankSum=1.638;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3130,354,0 chrII 529552 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=3.363;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.683;QD=24.50;ReadPosRankSum=1.683;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3455,384,0 chrII 529840 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.77;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4279,459,0 chrII 530040 . C G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.9719;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.46;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3412,390,0 chrII 530065 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.88;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3523,375,0 chrII 530826 . T C 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.3375;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=1.895;QD=22.33;ReadPosRankSum=1.187;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:1127,126,0 chrII 531256 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0826;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=1.500;QD=24.00;ReadPosRankSum=1.011;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3624,408,0 chrII 531481 . A T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.03;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3370,372,0 chrII 531496 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=156;Dels=0.00;FS=6.220;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=1.387;QD=19.81;ReadPosRankSum=2.402;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3123,354,0 chrII 531601 . T C 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=205;Dels=0.00;FS=2.882;HaplotypeScore=14.3081;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.114;QD=22.65;ReadPosRankSum=2.353;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4643,525,0 chrII 531940 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.38;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3513,399,0 chrII 532347 . T A 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=2.949;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.912;QD=24.16;ReadPosRankSum=2.409;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2932,315,0 chrII 532473 . C T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.37;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3926,438,0 chrII 532544 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.9933;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.058;QD=20.60;ReadPosRankSum=1.703;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2546,285,0 chrII 532567 . T A 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.353;QD=22.23;ReadPosRankSum=1.701;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2545,276,0 chrII 532597 . T C 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-0.637;QD=20.99;ReadPosRankSum=1.707;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2909,330,0 chrII 532643 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=19.03;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2887,318,0 chrII 532658 . A G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.514;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;MQRankSum=-1.637;QD=16.99;ReadPosRankSum=1.708;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2514,288,0 chrII 532659 . A G 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.485;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;MQRankSum=-0.753;QD=16.94;ReadPosRankSum=1.708;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2506,291,0 chrII 532679 . C A 2270 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.46;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2303,249,0 chrII 532705 . A T 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=-0.187;QD=16.38;ReadPosRankSum=1.679;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2162,237,0 chrII 532765 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.67;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3424,390,0 chrII 532827 . T G 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.445;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=0.433;QD=20.12;ReadPosRankSum=1.711;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3421,384,0 chrII 532850 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=16.81;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2621,303,0 chrII 532864 . A C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.038;HaplotypeScore=7.4836;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=-0.235;QD=16.36;ReadPosRankSum=1.687;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2569,294,0 chrII 532929 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.6933;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.93;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2399,264,0 chrII 533002 . A G 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=1.614;QD=20.77;ReadPosRankSum=1.614;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2505,282,0 chrII 533150 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=23.94;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2044,225,0 chrII 533216 . A C 1984 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=19.08;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2017,228,0 chrII 533250 . A G 1650 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;QD=16.34;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1683,186,0 chrII 533257 . A G 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=106;Dels=0.00;FS=6.932;HaplotypeScore=80.6465;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;MQRankSum=-1.916;QD=13.97;ReadPosRankSum=2.403;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1514,174,0 chrII 533278 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=0;QD=11.00;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1287,144,0 chrII 533300 . C G 1307 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=12.10;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1340,156,0 chrII 533310 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=12.61;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1408,156,0 chrII 533330 . T A 1575 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=13.46;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1608,177,0 chrII 533382 . A G 2939 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=21.61;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2972,327,0 chrII 533611 . T C 339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-6.128;DP=113;Dels=0.00;FS=14.160;HaplotypeScore=182.6733;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-2.568;QD=3.00;ReadPosRankSum=-7.160;SB=-9.997e+00 GT:AD:DP:GQ:PL 1/1:87,24:113:42:372,42,0 chrII 533657 . C T 2211 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.74;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2244,252,0 chrII 533727 . A G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.352;QD=22.24;ReadPosRankSum=1.703;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2679,300,0 chrII 533959 . A G 5167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=246;Dels=0.00;FS=12.709;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.824;QD=21.00;ReadPosRankSum=2.922;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:3,242:246:99:5167,597,0 chrII 534277 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.7166;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.917;QD=21.22;ReadPosRankSum=1.715;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4329,486,0 chrII 534427 . C T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.0966;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.20;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4284,480,0 chrII 534459 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.22;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4118,441,0 chrII 534595 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2617;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.61;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3708,414,0 chrII 534664 . T C 2241 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.75;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2274,258,0 chrII 534745 . T C 1884 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.22;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1917,225,0 chrII 534864 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.28;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1686,183,0 chrII 534922 . T C 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.962;QD=23.78;ReadPosRankSum=1.697;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2411,267,0 chrII 534987 . G C 1961 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.79;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1994,225,0 chrII 535057 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.61;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2913,330,0 chrII 535096 . A T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.38;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3364,369,0 chrII 535121 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.86;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3484,381,0 chrII 535193 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.29;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2184,240,0 chrII 535214 . A G 1847 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=76.2543;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=18.85;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1880,210,0 chrII 535224 . A G 38.97 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=0.40;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:9:71,9,0 chrII 535439 . A G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=125;Dels=0.00;FS=8.012;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.462;QD=20.96;ReadPosRankSum=2.351;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2653,300,0 chrII 535517 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.95;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2421,264,0 chrII 535535 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=18.84;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2162,237,0 chrII 535549 . A G 2104 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.30;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2137,240,0 chrII 535578 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.73;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2460,264,0 chrII 535736 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.35;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3432,381,0 chrII 535775 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=2.763;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.737;QD=24.06;ReadPosRankSum=2.399;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3489,393,0 chrII 535946 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.89;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4246,465,0 chrII 536134 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.77;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3149,345,0 chrII 536146 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.13;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3266,366,0 chrII 536197 . C A 3003 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=18.65;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3036,336,0 chrII 536205 . A C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=-0.219;QD=17.36;ReadPosRankSum=1.710;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2794,306,0 chrII 536213 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=17.09;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2682,303,0 chrII 536258 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=16.12;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2242,246,0 chrII 536319 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.84;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2934,318,0 chrII 536349 . G A 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.017;DP=126;Dels=0.00;FS=3.600;HaplotypeScore=5.9217;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.265;QD=22.82;ReadPosRankSum=1.347;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2908,292,0 chrII 536426 . C A 2410 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.60;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2443,267,0 chrII 536450 . A T 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=123;Dels=0.00;FS=3.011;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.450;QD=21.46;ReadPosRankSum=2.410;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2673,291,0 chrII 536637 . A G 3021 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.43;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3054,354,0 chrII 536661 . T C 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.216;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.061;QD=21.67;ReadPosRankSum=1.585;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3110,342,0 chrII 536700 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.2989;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.47;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3478,384,0 chrII 536754 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.75;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4381,477,0 chrII 536917 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.91;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4032,435,0 chrII 537036 . A G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-1.583;QD=20.96;ReadPosRankSum=1.707;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2947,327,0 chrII 537039 . A G 2928 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.05;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2961,333,0 chrII 537174 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=20.69;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2495,270,0 chrII 537210 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=23.32;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3158,342,0 chrII 537267 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.75;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2859,318,0 chrII 537351 . C T 1096 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.2032;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=12.04;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1129,123,0 chrII 537480 . T C 2763 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=24.45;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2796,312,0 chrII 537549 . A T 2721 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=23.06;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2754,300,0 chrII 538047 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.73;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4000,453,0 chrII 538103 . A G 2930 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.23;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2963,330,0 chrII 538121 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.412;QD=19.70;ReadPosRankSum=1.705;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2633,303,0 chrII 538192 . T G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.86;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3412,387,0 chrII 538298 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.364;QD=22.96;ReadPosRankSum=1.703;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2765,321,0 chrII 538389 . A T 2981 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.08;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3014,339,0 chrII 538409 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=139;Dels=0.00;FS=6.091;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.146;QD=20.81;ReadPosRankSum=2.599;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:2925,339,0 chrII 538606 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.60;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3269,363,0 chrII 538706 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=3.418;HaplotypeScore=12.1407;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.370;QD=22.66;ReadPosRankSum=1.708;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3308,378,0 chrII 538919 . A C 2552 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2585,285,0 chrII 538968 . T A 2718 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.23;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2751,294,0 chrII 539030 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.87;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1958,216,0 chrII 539253 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=15.61;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1188,138,0 chrII 539483 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.289;QD=22.63;ReadPosRankSum=1.677;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2862,321,0 chrII 539810 . A T 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.024;QD=24.03;ReadPosRankSum=1.637;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1787,195,0 chrII 539825 . G T 1728 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.00;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1761,195,0 chrII 540265 . G A 4798.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.7180;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.40;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4798,525,0 chrII 540365 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.52;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2639,297,0 chrII 540546 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.42;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4103,444,0 chrII 540568 . T C 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=180;Dels=0.00;FS=2.642;HaplotypeScore=7.2603;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.324;QD=22.34;ReadPosRankSum=2.079;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4021,453,0 chrII 540838 . G A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.60;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4060,444,0 chrII 541339 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=26.57;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3693,402,0 chrII 541389 . T C 2245 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.68;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2278,261,0 chrII 541497 . A G 557.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;DP=82;Dels=0.00;FS=5.336;HaplotypeScore=63.8416;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=4.724;QD=6.79;ReadPosRankSum=5.998;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,58:82:99:587,0,212 chrII 541582 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.188;QD=19.88;ReadPosRankSum=2.392;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1723,198,0 chrII 541608 . T A 923 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.07;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:956,105,0 chrII 541736 . A G 1139 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.49;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1172,135,0 chrII 541749 . G A 995 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.16;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:58:99:1028,117,0 chrII 541763 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.76;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1081,120,0 chrII 542052 . T A 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.414;QD=21.75;ReadPosRankSum=1.694;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2034,219,0 chrII 542100 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.160;QD=22.73;ReadPosRankSum=1.700;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2511,288,0 chrII 542232 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2760,297,0 chrII 542283 . T C 2182 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.60;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2215,246,0 chrII 542402 . G A 3107 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.19;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3140,339,0 chrII 542481 . A C 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.726;QD=22.63;ReadPosRankSum=1.620;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2138,240,0 chrII 542592 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.47;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3060,345,0 chrII 542664 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.50;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2630,288,0 chrII 542709 . A G 2211 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.86;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2244,264,0 chrII 542838 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.23;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3271,369,0 chrII 542886 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.10;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2908,327,0 chrII 542895 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.25;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2828,303,0 chrII 543006 . T C 2529 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.80;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2562,288,0 chrII 543063 . A G 2624 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.88;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2657,306,0 chrII 543299 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.95;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3085,351,0 chrII 543489 . G A 2624 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=23.43;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2657,288,0 chrII 543497 . G A 2374 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=23.50;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2407,264,0 chrII 543498 . G A 2263 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=22.41;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2296,258,0 chrII 543678 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.14;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2690,306,0 chrII 543947 . G T 3023 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.56;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3056,327,0 chrII 543997 . C T 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=152;Dels=0.00;FS=3.219;HaplotypeScore=11.8845;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.430;QD=21.11;ReadPosRankSum=-1.011;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3241,357,0 chrII 544063 . T G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=161;Dels=0.00;FS=3.009;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.410;QD=21.39;ReadPosRankSum=2.388;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3443,390,0 chrII 544856 . T C 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=95;Dels=0.00;FS=2.601;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.032;QD=23.02;ReadPosRankSum=2.925;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:3,91:95:99:2220,246,0 chrII 545201 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.95;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3443,378,0 chrII 545438 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.67;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4290,480,0 chrII 545525 . C T 4569.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=14.0296;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.92;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4569,498,0 chrII 545732 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.54;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3238,348,0 chrII 545735 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.68;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3143,351,0 chrII 546015 . A C 2335 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.24;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2368,273,0 chrII 546124 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=92.3829;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=21.16;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2255,252,0 chrII 546140 . A T 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;MQRankSum=-0.340;QD=18.60;ReadPosRankSum=1.698;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1930,213,0 chrII 546154 . G T 1807 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=19.43;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1840,204,0 chrII 546224 . T C 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.077;QD=20.80;ReadPosRankSum=1.701;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2342,264,0 chrII 546293 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=20.44;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2322,255,0 chrII 546316 . A G 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=4.191;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;MQRankSum=-0.379;QD=17.55;ReadPosRankSum=1.666;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1893,213,0 chrII 546330 . C A 1708 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=16.91;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1741,189,0 chrII 546353 . G A 173.12 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.355;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=79.6843;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;MQRankSum=-1.732;QD=1.65;ReadPosRankSum=1.698;SB=-9.161e+02 GT:AD:DP:GQ:PL 1/1:1,100:105:5:204,5,0 chrII 546387 . A G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=8.467;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=1.570;QD=19.68;ReadPosRankSum=2.414;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2768,309,0 chrII 546584 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7226;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.13;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3789,411,0 chrII 546732 . C G 4895.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.65;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4895,570,0 chrII 546739 . G A 4926.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.70;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4926,555,0 chrII 546933 . A G 5092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.085;QD=22.73;ReadPosRankSum=1.685;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5092,564,0 chrII 547032 . T C 5422.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.78;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5422,635,0 chrII 547137 . A G 1972 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=16.43;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2005,231,0 chrII 547149 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.1633;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.08;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2083,240,0 chrII 547353 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=15.35;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1461,165,0 chrII 547371 . G C 1690 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=13.74;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1723,204,0 chrII 547380 . T G 1792 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=14.69;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1825,207,0 chrII 547403 . A C 1896 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=14.36;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1929,216,0 chrII 547412 . C A 1767 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;QD=12.80;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1800,198,0 chrII 547422 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=12.53;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:1762,189,0 chrII 547427 . T C 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;MQRankSum=-1.356;QD=12.80;ReadPosRankSum=1.707;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1800,201,0 chrII 547480 . T C 2617 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.5102;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.56;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2650,303,0 chrII 547516 . G C 3208 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.43;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3241,363,0 chrII 547535 . A G 2868 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.38;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:2901,324,0 chrII 547559 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=19.04;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2603,279,0 chrII 548176 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.71;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2531,279,0 chrII 548225 . T C 1844 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.83;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1877,210,0 chrII 548249 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.35;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1613,177,0 chrII 548344 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.01;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1816,195,0 chrII 548425 . T C 1714 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.70;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1747,198,0 chrII 548443 . T C 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.787;QD=21.47;ReadPosRankSum=1.687;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1686,192,0 chrII 549466 . C A 2739 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.21;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,113:118:99:2772,297,0 chrII 549496 . G T 2745 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.32;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2778,306,0 chrII 549535 . A C 3972.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.83;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3972,447,0 chrII 549576 . A G 4085.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.89;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4085,453,0 chrII 549769 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=23.13;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3585,393,0 chrII 549839 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=166;Dels=0.00;FS=2.821;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.290;QD=22.26;ReadPosRankSum=2.420;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3695,423,0 chrII 550124 . A G 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=230;Dels=0.00;FS=2.843;HaplotypeScore=8.1179;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.425;QD=20.66;ReadPosRankSum=2.343;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:4751,543,0 chrII 550142 . T C 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=3.474;HaplotypeScore=9.0109;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.160;QD=21.20;ReadPosRankSum=1.717;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4833,561,0 chrII 550241 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.74;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3262,354,0 chrII 550268 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.15;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3553,390,0 chrII 550717 . C T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.15;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3566,399,0 chrII 550791 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6460;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.98;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3407,372,0 chrII 550847 . A C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.078;QD=23.75;ReadPosRankSum=1.706;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3216,357,0 chrII 551109 . A G 3038 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.55;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3071,342,0 chrII 551347 . G A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.91;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4113,447,0 chrII 551607 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=150;Dels=0.00;FS=2.909;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.352;QD=22.29;ReadPosRankSum=2.384;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3344,366,0 chrII 552237 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1906,213,0 chrII 552407 . A G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=3.718;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.426;QD=22.15;ReadPosRankSum=1.701;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2536,288,0 chrII 552625 . A G 2495 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.97;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2528,285,0 chrII 552684 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.35;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2601,282,0 chrII 552727 . T G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.399;QD=22.12;ReadPosRankSum=1.706;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3064,348,0 chrII 552889 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.95;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3465,378,0 chrII 552962 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.19;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3117,348,0 chrII 553321 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.48;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1923,213,0 chrII 553367 . G T 1562 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.64;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1595,174,0 chrII 553374 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.21;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1543,165,0 chrII 553393 . A G 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.137;QD=23.17;ReadPosRankSum=1.678;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1516,168,0 chrII 553854 . T C 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.486;QD=22.79;ReadPosRankSum=2.395;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4148,462,0 chrII 554320 . G T 2507 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.11;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2540,282,0 chrII 554411 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.06;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2062,222,0 chrII 554441 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.05;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1797,201,0 chrII 554537 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.42;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3031,330,0 chrII 554621 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.109;QD=25.47;ReadPosRankSum=2.410;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:3242,363,0 chrII 554650 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=152;Dels=0.00;FS=4.328;HaplotypeScore=12.9273;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.872;QD=22.53;ReadPosRankSum=1.709;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3424,378,0 chrII 554734 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.81;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3533,399,0 chrII 555319 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5326;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.52;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1885,204,0 chrII 555369 . T C 968 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=11.52;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1001,117,0 chrII 555461 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.88;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3191,351,0 chrII 555805 . A G 2638 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.62;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2671,312,0 chrII 556121 . G A 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.162;QD=21.97;ReadPosRankSum=1.001;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2845,318,0 chrII 556272 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.32;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2101,237,0 chrII 556539 . T C 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.731;QD=22.93;ReadPosRankSum=2.322;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2257,261,0 chrII 556564 . G C 2492 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.92;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2525,279,0 chrII 556857 . T C 2936 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2969,330,0 chrII 557020 . G T 3102 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.02;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3135,336,0 chrII 557104 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.2361;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.86;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3521,393,0 chrII 557651 . T A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3738,408,0 chrII 558042 . A G 2048 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.81;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2081,240,0 chrII 558440 . C G 1264 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1297,144,0 chrII 558499 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=2.824;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.052;QD=22.18;ReadPosRankSum=2.381;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1608,183,0 chrII 558576 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.0504;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.031;QD=22.79;ReadPosRankSum=1.701;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2608,291,0 chrII 558870 . T C 5330.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.79;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5330,588,0 chrII 559131 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=8.353;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.685;QD=23.52;ReadPosRankSum=2.390;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3857,429,0 chrII 559378 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2639,282,0 chrII 559512 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.67;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1935,225,0 chrII 559609 . G A 927 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:960,102,0 chrII 559922 . C G 1278 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=41.6088;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1311,147,0 chrII 560167 . T A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.74;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3488,384,0 chrII 561052 . A T 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=2.633;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.060;QD=21.92;ReadPosRankSum=2.359;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2400,264,0 chrII 561133 . A G 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-2.034;QD=23.21;ReadPosRankSum=2.386;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1843,204,0 chrII 561765 . G C 4252.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0910;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.11;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4252,489,0 chrII 562367 . T A 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=4.058;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.464;QD=18.93;ReadPosRankSum=1.701;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2153,237,0 chrII 562638 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.34;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2677,285,0 chrII 562662 . T C 2075 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=18.69;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2108,240,0 chrII 562773 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.6413;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.92;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1958,213,0 chrII 562903 . A G 432 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.734;QD=19.64;ReadPosRankSum=1.576;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:54:465,54,0 chrII 562935 . T C 317 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.64;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:39:350,39,0 chrII 562993 . C T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.39;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 chrII 563013 . T A 50.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.74;SB=-5.121e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:83,9,0 chrII 564041 . T A 5532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=225;Dels=0.00;FS=5.302;HaplotypeScore=12.2648;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.067;QD=24.59;ReadPosRankSum=2.924;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:5532,598,0 chrII 564884 . C G 1369 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1402,168,0 chrII 565133 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.26;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3605,402,0 chrII 565189 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.68;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4049,438,0 chrII 565223 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.77;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3875,432,0 chrII 565389 . A C 3135 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.97;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3168,366,0 chrII 565408 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.16;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3590,387,0 chrII 565443 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.67;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3315,372,0 chrII 565493 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.63;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2952,324,0 chrII 565570 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.0828;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=21.02;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2913,327,0 chrII 565601 . A T 2989 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=22.47;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3022,339,0 chrII 565627 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=22.55;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2852,312,0 chrII 565643 . T G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=4.479;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.678;QD=21.72;ReadPosRankSum=1.672;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2531,279,0 chrII 565711 . T C 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.037;QD=17.83;ReadPosRankSum=1.622;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1727,198,0 chrII 565729 . G T 1744 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.3631;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=17.27;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1777,198,0 chrII 565735 . G A 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.136;DP=103;Dels=0.00;FS=3.052;HaplotypeScore=14.0886;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=1.943;QD=16.78;ReadPosRankSum=-0.736;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1761,192,0 chrII 565750 . T C 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.9861;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.137;QD=14.68;ReadPosRankSum=1.419;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:1780,201,0 chrII 565929 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.33;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2785,315,0 chrII 565949 . A G 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=132;Dels=0.00;FS=6.190;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.445;QD=21.16;ReadPosRankSum=2.393;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2826,318,0 chrII 566056 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.43;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1968,222,0 chrII 566061 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.35;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2142,234,0 chrII 566265 . T A 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.192;QD=24.52;ReadPosRankSum=1.700;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2681,297,0 chrII 566831 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3040,330,0 chrII 567077 . C A 3194 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=7.3484;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3227,354,0 chrII 567480 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.11;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2390,258,0 chrII 567532 . T C 2280 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.80;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2313,264,0 chrII 567634 . T C 2149 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.86;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2182,243,0 chrII 567676 . T G 2349 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.43;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2382,270,0 chrII 567682 . G C 2372 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.45;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2405,264,0 chrII 567814 . T C 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.065;DP=115;Dels=0.00;FS=3.022;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-2.150;QD=21.14;ReadPosRankSum=2.343;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2464,288,0 chrII 567902 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.53;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4047,474,0 chrII 568357 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2598,288,0 chrII 568406 . T C 2387 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.10;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2420,273,0 chrII 568465 . G T 2213 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.4195;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.13;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2246,252,0 chrII 568762 . T G 2603 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.69;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2636,291,0 chrII 568783 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.08;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2520,279,0 chrII 568819 . T C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=7.891;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.244;QD=17.59;ReadPosRankSum=2.347;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1722,201,0 chrII 568820 . T G 1672 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=17.79;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1705,198,0 chrII 569235 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2760,309,0 chrII 569496 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.37;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2784,309,0 chrII 569637 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.62;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2952,330,0 chrII 569684 . A G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.5140;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.361;QD=19.88;ReadPosRankSum=1.696;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1961,222,0 chrII 569804 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=18.45;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1601,177,0 chrII 569872 . G C 2382 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.34;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2415,267,0 chrII 570052 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=6.257;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.098;QD=22.11;ReadPosRankSum=2.337;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2930,330,0 chrII 570258 . T C 2437 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.98;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2470,288,0 chrII 570264 . T C 2487 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.55;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2520,291,0 chrII 570301 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.302;QD=20.41;ReadPosRankSum=1.708;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2992,336,0 chrII 570754 . G A 3843.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.47;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3843,429,0 chrII 570929 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.45;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3475,378,0 chrII 570931 . T C 3146 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.42;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3179,372,0 chrII 571050 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.15;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3565,387,0 chrII 571089 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.63;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3201,357,0 chrII 571218 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.26;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2584,288,0 chrII 571237 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.27;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2445,267,0 chrII 571243 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.03;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2397,264,0 chrII 571287 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.65;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1833,201,0 chrII 571349 . A G 689 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=8.11;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:84:722,84,0 chrII 571381 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=17.09;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1520,168,0 chrII 571411 . A G 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.707;QD=20.67;ReadPosRankSum=1.697;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2100,237,0 chrII 571717 . T G 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.762;QD=22.48;ReadPosRankSum=1.680;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4519,525,0 chrII 571870 . T G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.907;DP=149;Dels=0.00;FS=4.771;HaplotypeScore=9.7939;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.308;QD=20.62;ReadPosRankSum=1.308;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3106,323,0 chrII 572025 . A C 3202 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.72;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3235,360,0 chrII 572093 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.780;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.081;QD=21.92;ReadPosRankSum=1.643;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2619,288,0 chrII 572114 . T C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=107;Dels=0.00;FS=2.952;HaplotypeScore=5.8062;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.128;QD=21.51;ReadPosRankSum=2.380;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2335,258,0 chrII 572317 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.07;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2477,276,0 chrII 573087 . T G 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.059;QD=22.43;ReadPosRankSum=1.700;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2455,279,0 chrII 573399 . A G 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.263;QD=21.44;ReadPosRankSum=1.660;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2113,237,0 chrII 573446 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.41;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2095,231,0 chrII 573536 . A G 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.825;QD=22.31;ReadPosRankSum=1.595;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2867,315,0 chrII 573669 . G T 1331 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.87;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1364,153,0 chrII 573792 . A T 1244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.027;QD=19.14;ReadPosRankSum=1.679;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1277,141,0 chrII 573826 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.24;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1531,168,0 chrII 573839 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.88;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1641,180,0 chrII 573870 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=6.560;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.192;QD=18.28;ReadPosRankSum=1.687;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1459,165,0 chrII 573886 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=18.86;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1504,162,0 chrII 573907 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.22;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1491,162,0 chrII 574173 . A C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.15;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3496,402,0 chrII 574257 . G A 2958 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.91;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2991,327,0 chrII 574302 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.87;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2715,297,0 chrII 574311 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.27;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2577,279,0 chrII 574371 . T C 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.164;QD=20.12;ReadPosRankSum=1.705;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2629,300,0 chrII 574533 . G T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.00;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3875,417,0 chrII 574593 . C A 4909.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.79;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4909,534,0 chrII 574683 . A G 5246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=226;Dels=0.00;FS=6.048;HaplotypeScore=10.4468;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.076;QD=23.21;ReadPosRankSum=2.951;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:5246,591,0 chrII 574755 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4331,471,0 chrII 574962 . G T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3849,426,0 chrII 575166 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=17.4395;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=19.80;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2369,273,0 chrII 575523 . G A 5611.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.3246;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.35;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5611,624,0 chrII 575685 . C G 4573.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.9184;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.53;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4573,525,0 chrII 575802 . C A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.72;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4293,471,0 chrII 576303 . T C 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.038;QD=20.63;ReadPosRankSum=2.399;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2034,228,0 chrII 576535 . T G 3103 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9685;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.16;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3136,354,0 chrII 576558 . T C 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.971;QD=21.87;ReadPosRankSum=1.627;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2920,327,0 chrII 576818 . T A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.90;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4190,459,0 chrII 578888 . T A 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.962;QD=20.42;ReadPosRankSum=0.000;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1503,168,0 chrII 579032 . A T 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=5.891;HaplotypeScore=51.1052;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.102;QD=0.56;ReadPosRankSum=1.470;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:9:69,9,0 chrII 579131 . A G 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=8.513;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.268;QD=24.35;ReadPosRankSum=1.635;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1786,195,0 chrII 579255 . T C 1862 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.2352;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.40;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1895,213,0 chrII 579408 . G T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.36;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3715,408,0 chrII 579497 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.339;QD=23.34;ReadPosRankSum=1.683;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3337,378,0 chrII 579639 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.625;QD=20.62;ReadPosRankSum=1.708;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3002,345,0 chrII 579647 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=143;Dels=0.00;FS=12.750;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.284;QD=20.20;ReadPosRankSum=2.894;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:2921,336,0 chrII 579929 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.52;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2873,324,0 chrII 579957 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.45;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2865,315,0 chrII 580071 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.60;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2979,330,0 chrII 580557 . C T 5914.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.75;SB=-3.304e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5914,660,0 chrII 580575 . T C 6331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.775;QD=22.94;ReadPosRankSum=1.694;SB=-3.457e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:6331,705,0 chrII 580722 . A T 6493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=285;Dels=0.00;FS=11.847;HaplotypeScore=11.7015;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.339;QD=22.78;ReadPosRankSum=2.898;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:3,282:285:99:6493,723,0 chrII 580746 . C T 6733.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=4.2151;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.82;SB=-3.496e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6733,727,0 chrII 580809 . A T 7164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=11.9073;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.199;QD=22.82;ReadPosRankSum=1.721;SB=-3.616e+03 GT:AD:DP:GQ:PL 1/1:1,313:314:99:7164,792,0 chrII 580868 . T C 6850.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=13.4427;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.70;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:6850,753,0 chrII 581091 . A C 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.0158;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-1.020;QD=21.48;ReadPosRankSum=1.392;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4619,534,0 chrII 581109 . A G 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.970;DP=236;Dels=0.00;FS=9.962;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.901;QD=20.42;ReadPosRankSum=2.918;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:3,230:236:99:4820,546,0 chrII 581181 . C A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.9672;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.43;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4576,519,0 chrII 581322 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=199;Dels=0.00;FS=8.400;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.022;QD=21.65;ReadPosRankSum=3.328;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:4309,486,0 chrII 581355 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.75;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4061,441,0 chrII 581397 . G T 3030 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.78;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3063,330,0 chrII 581460 . A G 2205 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.34;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2238,252,0 chrII 581465 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=115;Dels=0.00;FS=2.533;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.053;QD=18.52;ReadPosRankSum=2.939;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:3,111:115:99:2163,240,0 chrII 581474 . C T 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=115;Dels=0.00;FS=5.254;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.517;QD=19.32;ReadPosRankSum=1.124;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2255,221,0 chrII 582285 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.6822;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.983;QD=23.63;ReadPosRankSum=1.692;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4065,465,0 chrII 582470 . A T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.21;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5455,591,0 chrII 582680 . T C 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=21.8633;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.628;QD=22.72;ReadPosRankSum=1.717;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5204,579,0 chrII 583031 . G T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.02;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4629,504,0 chrII 583262 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2588,276,0 chrII 583463 . A G 963 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=20.49;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:996,117,0 chrII 583514 . T C 1375 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.48;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1408,159,0 chrII 583825 . T G 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.421;QD=19.50;ReadPosRankSum=1.684;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4172,474,0 chrII 583838 . C T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.82;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4221,459,0 chrII 584397 . C T 4939.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.63;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4939,537,0 chrII 584634 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.33;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3290,357,0 chrII 584764 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2474,285,0 chrII 584923 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=1;MQRankSum=-0.079;QD=23.09;ReadPosRankSum=1.706;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3127,351,0 chrII 585044 . C T 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.860;DP=143;Dels=0.00;FS=4.071;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.521;QD=22.09;ReadPosRankSum=-1.272;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3192,331,0 chrII 585197 . G A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.28;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3472,384,0 chrII 585248 . T C 3102 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=1;QD=22.64;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3135,360,0 chrII 585548 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.48;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2955,327,0 chrII 585769 . T C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.9499;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.732;QD=20.25;ReadPosRankSum=1.704;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2564,294,0 chrII 585814 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.00;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2893,324,0 chrII 585909 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.09;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3670,408,0 chrII 586218 . G C 1796 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.96;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1829,210,0 chrII 586221 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.02;FS=0.000;HaplotypeScore=5.3198;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.43;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1892,207,0 chrII 587309 . T C 2772 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.54;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2805,312,0 chrII 587372 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.353;QD=22.03;ReadPosRankSum=1.701;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2544,288,0 chrII 587405 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.79;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2779,306,0 chrII 587830 . G C 2917 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.27;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2950,339,0 chrII 587865 . T A 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=127;Dels=0.00;FS=3.012;HaplotypeScore=8.4099;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.145;QD=22.58;ReadPosRankSum=2.392;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2901,315,0 chrII 588089 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=162;Dels=0.00;FS=11.423;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.099;QD=21.84;ReadPosRankSum=2.932;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3538,414,0 chrII 588182 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.83;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2637,303,0 chrII 588509 . A G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=2.997;HaplotypeScore=9.0117;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.508;QD=21.27;ReadPosRankSum=2.325;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2990,336,0 chrII 588671 . G C 2672 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2705,315,0 chrII 588842 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.99;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3695,411,0 chrII 589117 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=3.782;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.410;QD=20.31;ReadPosRankSum=1.716;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4388,489,0 chrII 589164 . T C 4427.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.0110;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.03;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4427,516,0 chrII 589328 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=133;Dels=0.00;FS=13.083;HaplotypeScore=10.2159;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=0.305;QD=19.31;ReadPosRankSum=2.947;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2601,294,0 chrII 589354 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=21.19;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3000,339,0 chrII 589381 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=18.98;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2406,261,0 chrII 589394 . G A 2234 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=17.45;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2267,255,0 chrII 589399 . A G 2226 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=17.26;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2259,258,0 chrII 589436 . A G 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=-1.643;QD=15.77;ReadPosRankSum=1.703;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:1910,213,0 chrII 589450 . T C 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.081;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=0.754;QD=16.14;ReadPosRankSum=1.620;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2034,228,0 chrII 589471 . A G 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=121;Dels=0.00;FS=8.850;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=-1.529;QD=14.97;ReadPosRankSum=3.385;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:1844,210,0 chrII 589487 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=14.65;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1498,165,0 chrII 589507 . A T 1214 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=14.63;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1247,141,0 chrII 589590 . G T 2159 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.77;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2192,243,0 chrII 589593 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=17.26;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2001,228,0 chrII 589724 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=99.5503;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=21.19;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2343,255,0 chrII 589739 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.83;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2234,252,0 chrII 589871 . A G 2694 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.96;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2727,321,0 chrII 589872 . G T 2823 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.91;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2856,315,0 chrII 589895 . T C 2712 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.80;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2745,315,0 chrII 589941 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=21.01;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2785,303,0 chrII 590654 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=131;Dels=0.00;FS=5.255;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.885;QD=20.65;ReadPosRankSum=2.808;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2738,309,0 chrII 590663 . A G 2351 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=18.66;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2384,273,0 chrII 590688 . A G 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=136;Dels=0.00;FS=3.002;HaplotypeScore=11.4005;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=0.373;QD=18.07;ReadPosRankSum=2.395;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2490,291,0 chrII 590742 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=18.47;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3307,360,0 chrII 590748 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=175;Dels=0.00;FS=9.262;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-1.158;QD=19.07;ReadPosRankSum=2.959;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:3338,372,0 chrII 590796 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=171;Dels=0.00;FS=5.751;HaplotypeScore=7.9103;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-1.882;QD=17.84;ReadPosRankSum=2.923;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3083,351,0 chrII 590807 . T G 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=172;Dels=0.00;FS=5.055;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.797;QD=16.45;ReadPosRankSum=3.233;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:4,166:172:99:2863,324,0 chrII 590880 . C A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.84;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4040,444,0 chrII 590898 . C T 4250.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=22.49;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4250,462,0 chrII 590964 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.358;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.266;QD=19.32;ReadPosRankSum=1.713;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3536,414,0 chrII 590982 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=3.612;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.815;QD=21.30;ReadPosRankSum=1.712;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3642,411,0 chrII 591378 . C A 2178 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2211,246,0 chrII 591539 . C A 280 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.67;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:36:313,36,0 chrII 591553 . A G 312 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=15.60;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:345,39,0 chrII 591560 . G T 318 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=14.45;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:39:351,39,0 chrII 591805 . G A 235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.910;DP=141;Dels=0.00;FS=25.781;HaplotypeScore=6.4394;MLEAC=1;MLEAF=0.500;MQ=28.02;MQ0=38;MQRankSum=-5.385;QD=1.67;ReadPosRankSum=1.760;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,55:141:99:265,0,1474 chrII 592600 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.33;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3413,384,0 chrII 592604 . G C 3465.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.66;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3465,381,0 chrII 592641 . A G 2680 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.10;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2713,303,0 chrII 592744 . T A 3083 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=124.0580;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.69;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3116,339,0 chrII 592905 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.48;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3085,345,0 chrII 593057 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.42;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2389,276,0 chrII 593091 . T C 1945 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9809;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.45;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1978,234,0 chrII 593127 . G T 1664 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.89;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1697,192,0 chrII 593154 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.6290;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.46;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1256,138,0 chrII 593215 . T A 1726 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=24.66;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1759,192,0 chrII 593283 . G C 2039 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=23.71;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2072,237,0 chrII 593336 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.77;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2362,252,0 chrII 593344 . T A 2036 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.78;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2069,225,0 chrII 593396 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.63;MQ0=0;QD=13.46;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1419,162,0 chrII 593409 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;QD=14.42;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1634,174,0 chrII 593415 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5528;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=12.83;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1560,171,0 chrII 593423 . A G 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=123;Dels=0.00;FS=3.004;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;MQRankSum=0.877;QD=13.28;ReadPosRankSum=2.389;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:1667,186,0 chrII 593432 . T C 1856 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=14.17;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1889,213,0 chrII 593462 . A G 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;MQRankSum=-0.028;QD=16.05;ReadPosRankSum=1.704;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1991,222,0 chrII 593500 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.13;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2932,321,0 chrII 594298 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.661;DP=182;Dels=0.00;FS=6.093;HaplotypeScore=9.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.372;QD=20.76;ReadPosRankSum=2.928;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:3779,426,0 chrII 594429 . C T 5483.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.63;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5483,603,0 chrII 594781 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=5.217;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.507;QD=21.99;ReadPosRankSum=1.676;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2738,312,0 chrII 595106 . G C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3397,384,0 chrII 595246 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.96;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3313,360,0 chrII 595346 . G T 2811 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.98;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2844,324,0 chrII 595497 . A G 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.770;QD=22.23;ReadPosRankSum=1.700;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2434,273,0 chrII 595508 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=95.1373;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.78;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2209,252,0 chrII 595625 . C A 1782 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.48;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1815,198,0 chrII 595735 . C G 2131 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.89;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2164,243,0 chrII 595927 . T C 1062 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1095,120,0 chrII 596219 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.89;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2422,264,0 chrII 596267 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.58;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3028,339,0 chrII 596654 . G A 4919.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.1149;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.06;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4919,558,0 chrII 597100 . G A 317 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:39:350,39,0 chrII 597289 . A G 1103 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.98;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1136,126,0 chrII 597781 . C A 2657 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.52;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2690,288,0 chrII 597806 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.97;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,113:118:99:2508,276,0 chrII 598137 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.15;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2000,216,0 chrII 598254 . T G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.4755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.569;QD=23.01;ReadPosRankSum=1.707;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3291,372,0 chrII 598328 . C A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.04;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3414,390,0 chrII 598378 . A C 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.523;QD=22.62;ReadPosRankSum=2.396;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,136:142:99:3245,363,0 chrII 598400 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.57;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3080,345,0 chrII 598635 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.43;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2774,306,0 chrII 599098 . T C 2317 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.635;QD=22.94;ReadPosRankSum=1.698;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2350,267,0 chrII 599573 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=195;Dels=0.00;FS=4.260;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.732;QD=20.74;ReadPosRankSum=1.678;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4044,474,0 chrII 599687 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.73;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3500,387,0 chrII 599732 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.3706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.461;QD=20.74;ReadPosRankSum=1.678;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2708,306,0 chrII 600106 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.87;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2338,270,0 chrII 600110 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.57;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2283,267,0 chrII 600505 . T A 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.245;QD=22.66;ReadPosRankSum=1.678;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1483,159,0 chrII 600557 . G A 1322 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.41;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1355,147,0 chrII 600570 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.55;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1563,171,0 chrII 600626 . A T 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.771;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.015;QD=22.70;ReadPosRankSum=1.692;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2008,219,0 chrII 601097 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=1.151;QD=21.38;ReadPosRankSum=2.410;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2705,297,0 chrII 601098 . T A 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-1.443;QD=21.78;ReadPosRankSum=2.411;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2799,303,0 chrII 601142 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.965;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.072;QD=19.34;ReadPosRankSum=1.709;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2876,327,0 chrII 601647 . T C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.40;ReadPosRankSum=1.707;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3079,354,0 chrII 602361 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.72;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3161,345,0 chrII 602668 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.26;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3512,387,0 chrII 602821 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=24.32;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3940,426,0 chrII 602847 . G C 3195 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.48;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3228,366,0 chrII 602855 . G A 3145 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.07;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3178,363,0 chrII 602942 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4209,453,0 chrII 603652 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.75;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3215,345,0 chrII 603825 . C T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.54;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3657,387,0 chrII 603837 . A T 2828 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=16.35;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2861,333,0 chrII 603865 . A G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.2706;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.417;QD=16.73;ReadPosRankSum=1.711;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:2844,327,0 chrII 603916 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=169;Dels=0.00;FS=7.037;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.124;QD=20.05;ReadPosRankSum=1.119;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3388,390,0 chrII 604051 . A T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.2147;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.56;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3768,408,0 chrII 604663 . C G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.58;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3396,384,0 chrII 605039 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.78;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1737,189,0 chrII 605667 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.13;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2567,276,0 chrII 605760 . G T 2543 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.71;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2576,282,0 chrII 605775 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.880;QD=20.33;ReadPosRankSum=1.650;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2595,288,0 chrII 605930 . T C 4605.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.93;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4605,516,0 chrII 606243 . G T 4679.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.05;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4679,519,0 chrII 606590 . C G 4174.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.32;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4174,471,0 chrII 606623 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=185;Dels=0.00;FS=9.776;HaplotypeScore=21.6925;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.172;QD=21.15;ReadPosRankSum=2.861;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:3,178:185:99:3913,456,0 chrII 606888 . C T 5251.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5251,585,0 chrII 607563 . A C 2328 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.05;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2361,267,0 chrII 607804 . A G 3122 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.0429;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.39;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3155,348,0 chrII 607924 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.5976;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.939;QD=20.20;ReadPosRankSum=1.703;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2437,279,0 chrII 608066 . T C 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.477;QD=22.20;ReadPosRankSum=1.704;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2741,315,0 chrII 608176 . T C 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.774;QD=23.49;ReadPosRankSum=2.424;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4511,510,0 chrII 608320 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=2.864;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.330;QD=22.89;ReadPosRankSum=2.343;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3215,366,0 chrII 608350 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.78;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3747,432,0 chrII 608432 . A C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.685;DP=164;Dels=0.00;FS=5.463;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.327;QD=20.65;ReadPosRankSum=2.957;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3387,393,0 chrII 608620 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.87;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2482,294,0 chrII 608834 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.1528;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.83;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2391,264,0 chrII 609102 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.50;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3578,405,0 chrII 609120 . T A 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=168;Dels=0.00;FS=2.664;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.192;QD=23.38;ReadPosRankSum=2.420;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3927,429,0 chrII 609198 . G C 4008.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.7450;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.17;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4008,459,0 chrII 609295 . T C 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.575;QD=21.10;ReadPosRankSum=1.591;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:4705,525,0 chrII 609547 . C T 5474.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5474,606,0 chrII 609958 . G C 2028 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.35;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2061,240,0 chrII 610045 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=3.611;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.035;QD=22.32;ReadPosRankSum=1.709;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3281,381,0 chrII 610060 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.04;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3438,366,0 chrII 610295 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=6.448;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.455;QD=21.87;ReadPosRankSum=2.341;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3007,336,0 chrII 610376 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3090,348,0 chrII 610437 . A T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=18.1481;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.76;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3505,387,0 chrII 610492 . T G 4139.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.25;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4139,465,0 chrII 610797 . T C 3156 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.90;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3189,360,0 chrII 610829 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.80;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3366,378,0 chrII 611052 . G T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.02;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3361,366,0 chrII 611232 . A C 4231.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4231,480,0 chrII 611338 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3310,357,0 chrII 611905 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=161;Dels=0.00;FS=5.112;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.035;QD=21.46;ReadPosRankSum=1.645;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3455,405,0 chrII 613145 . G A 7076.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=17.8734;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.90;SB=-3.928e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:7076,775,0 chrII 613535 . A G 8191.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.652;DP=400;Dels=0.00;FS=8.711;HaplotypeScore=20.0409;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.404;QD=20.48;ReadPosRankSum=3.269;SB=-4.293e+03 GT:AD:DP:GQ:PL 1/1:4,393:400:99:8191,931,0 chrII 613948 . A G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=114;Dels=0.00;FS=2.571;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.726;QD=20.71;ReadPosRankSum=2.921;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2394,267,0 chrII 614131 . A G 2739 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.0283;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.82;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2772,306,0 chrII 614359 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.79;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3534,402,0 chrII 614387 . C A 3119 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7933;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=19.25;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3152,342,0 chrII 614400 . C A 3118 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=18.78;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3151,348,0 chrII 614466 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=7.434;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.728;QD=19.36;ReadPosRankSum=2.418;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3092,345,0 chrII 614507 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.29;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3705,405,0 chrII 614520 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.061;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.584;QD=20.80;ReadPosRankSum=1.712;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3578,420,0 chrII 614550 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=15.2075;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.20;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3184,345,0 chrII 614624 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-1.459;QD=21.26;ReadPosRankSum=-1.094;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4040,417,0 chrII 614633 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.5211;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.51;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4226,459,0 chrII 614683 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.9991;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.57;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4032,471,0 chrII 614803 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=168;Dels=0.00;FS=8.703;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=1.294;QD=20.39;ReadPosRankSum=2.420;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3426,396,0 chrII 614816 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=187;Dels=0.00;FS=5.178;HaplotypeScore=17.7202;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.185;QD=18.90;ReadPosRankSum=3.393;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:4,180:187:99:3534,408,0 chrII 614824 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.733;DP=192;Dels=0.00;FS=7.784;HaplotypeScore=18.1313;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-0.435;QD=17.66;ReadPosRankSum=3.782;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:5,184:192:99:3391,387,0 chrII 614917 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.97;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3376,369,0 chrII 614924 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.29;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3162,348,0 chrII 615005 . A G 2797 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.52;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2830,327,0 chrII 615654 . G C 6216.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=24.2842;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.60;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,268:275:99:6216,687,0 chrII 615698 . G A 5583.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.1356;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.42;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5583,609,0 chrII 615971 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.44;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4107,447,0 chrII 616853 . G A 5321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.394;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=2.417;QD=23.24;ReadPosRankSum=-1.276;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5321,560,0 chrII 617060 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=3.110;HaplotypeScore=8.8722;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.748;QD=20.48;ReadPosRankSum=1.712;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3625,402,0 chrII 617107 . C T 3486.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.7567;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.75;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3486,378,0 chrII 617606 . A C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=125;Dels=0.00;FS=2.965;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.128;QD=22.46;ReadPosRankSum=2.391;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2841,315,0 chrII 618167 . T C 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.183;QD=23.04;ReadPosRankSum=1.712;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3940,438,0 chrII 618558 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.05;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4160,453,0 chrII 618908 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.67;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4262,483,0 chrII 619507 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2998,327,0 chrII 620439 . A T 1750 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.44;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1783,201,0 chrII 620443 . G T 1640 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.52;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1673,186,0 chrII 620541 . T C 2197 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.33;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2230,249,0 chrII 620548 . A G 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=106;Dels=0.00;FS=8.066;HaplotypeScore=5.8957;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.108;QD=19.46;ReadPosRankSum=2.354;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,101:106:99:2096,234,0 chrII 621285 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.19;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3572,402,0 chrII 621546 . C T 5790.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.7972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5790,630,0 chrII 621963 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3347,372,0 chrII 622305 . T A 1915 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1948,216,0 chrII 622495 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.19;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2089,222,0 chrII 622849 . A T 1172 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1205,135,0 chrII 622904 . T A 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.190;QD=24.44;ReadPosRankSum=1.649;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2086,225,0 chrII 622981 . A C 2890 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.6161;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.49;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2923,330,0 chrII 623061 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2714,309,0 chrII 623272 . C A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.93;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3371,378,0 chrII 623818 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=209;Dels=0.00;FS=3.201;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.251;QD=21.84;ReadPosRankSum=1.715;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4564,522,0 chrII 624009 . C T 5099.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.56;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5099,558,0 chrII 624736 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1042,117,0 chrII 624805 . G A 1978 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.2426;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.55;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2011,216,0 chrII 625298 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.197;QD=22.94;ReadPosRankSum=1.707;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3222,360,0 chrII 626092 . A G 5181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.2869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.692;QD=22.53;ReadPosRankSum=1.585;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:5181,551,0 chrII 626455 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9922;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.39;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4805,514,0 chrII 626578 . T A 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.307;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.704;QD=23.19;ReadPosRankSum=1.713;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4221,474,0 chrII 626629 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2452;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.16;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4062,447,0 chrII 627001 . T A 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.735;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.3020;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.903;QD=21.75;ReadPosRankSum=0.539;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4111,439,0 chrII 627055 . A T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.96;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4128,468,0 chrII 627259 . C G 4203.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4203,486,0 chrII 627481 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.1552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3887,444,0 chrII 627887 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.5554;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.82;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3468,387,0 chrII 628807 . T C 857 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=17.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:890,102,0 chrII 629013 . G A 1335 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1368,147,0 chrII 629145 . A G 2194 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.39;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2227,261,0 chrII 629259 . G A 4807.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4807,517,0 chrII 629636 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2550,279,0 chrII 629782 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=2.687;HaplotypeScore=10.4686;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.122;QD=23.17;ReadPosRankSum=2.379;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4055,453,0 chrII 630035 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.43;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4005,465,0 chrII 630052 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.95;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4190,474,0 chrII 630091 . T C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=189;Dels=0.02;FS=10.592;HaplotypeScore=7.3130;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.856;QD=15.63;ReadPosRankSum=2.423;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:2987,336,0 chrII 630094 . A G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.140;QD=14.63;ReadPosRankSum=1.678;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:2871,330,0 chrII 630469 . A G 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=199;Dels=0.00;FS=6.039;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.914;QD=21.60;ReadPosRankSum=2.944;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4299,498,0 chrII 631243 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4036,453,0 chrII 631321 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=180;Dels=0.00;FS=6.606;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.339;QD=22.33;ReadPosRankSum=2.422;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:4019,450,0 chrII 631366 . T C 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=122;Dels=0.00;FS=3.680;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.160;QD=22.02;ReadPosRankSum=1.703;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2719,303,0 chrII 631668 . T C 2572 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.81;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2605,288,0 chrII 631768 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2934,336,0 chrII 632118 . T G 1990 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.57;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2023,222,0 chrII 632170 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.00;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1489,159,0 chrII 632896 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.50;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4278,465,0 chrII 632908 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.65;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3970,438,0 chrII 632917 . T A 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-1.163;QD=18.68;ReadPosRankSum=1.716;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:3978,441,0 chrII 633067 . T C 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.544;QD=22.27;ReadPosRankSum=1.681;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4520,507,0 chrII 633129 . C T 5170.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.3304;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.78;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5170,564,0 chrII 633214 . T C 5192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=237;Dels=0.00;FS=3.257;HaplotypeScore=16.5398;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.936;QD=21.91;ReadPosRankSum=1.688;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5192,573,0 chrII 633280 . A T 4778.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.13;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4778,525,0 chrII 633358 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.31;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3726,411,0 chrII 633402 . G T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.55;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3555,390,0 chrII 633409 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.44;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3479,381,0 chrII 633444 . G C 3870.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.64;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:3870,438,0 chrII 633468 . T G 3960.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.8951;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.31;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3960,450,0 chrII 633618 . A C 4655.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.28;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4655,531,0 chrII 633876 . G A 5124.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.9015;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.88;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5124,558,0 chrII 633957 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.13;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4226,453,0 chrII 633960 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=19.23;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3923,441,0 chrII 635127 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3137,357,0 chrII 635445 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.227;QD=21.14;ReadPosRankSum=1.696;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4059,459,0 chrII 635478 . C T 4427.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.06;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4427,477,0 chrII 635668 . T C 2253 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.09;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2286,258,0 chrII 635880 . A G 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=5.087;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.003;QD=23.29;ReadPosRankSum=1.712;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4029,462,0 chrII 636267 . C T 5330.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.49;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5330,588,0 chrII 636372 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.33;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4735,537,0 chrII 636994 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=150;Dels=0.00;FS=2.953;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.707;QD=21.46;ReadPosRankSum=2.351;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3252,363,0 chrII 637594 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=6.961;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.654;QD=22.47;ReadPosRankSum=2.335;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:3888,447,0 chrII 637624 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.66;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3069,342,0 chrII 637861 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.6063;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.02;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3730,417,0 chrII 637987 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.1045;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.97;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4123,444,0 chrII 638086 . A G 4979.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.9525;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.75;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:4979,561,0 chrII 638092 . G T 5122.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.2304;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.65;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5122,567,0 chrII 638354 . C A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.88;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3424,366,0 chrII 638491 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.86;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3338,390,0 chrII 638716 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=216;Dels=0.00;FS=3.029;HaplotypeScore=11.5415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.396;QD=20.60;ReadPosRankSum=2.380;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4449,504,0 chrII 639238 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=146;Dels=0.00;FS=6.234;HaplotypeScore=6.2898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.432;QD=21.16;ReadPosRankSum=2.382;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3122,348,0 chrII 639700 . C T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.46;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4448,477,0 chrII 639793 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.18;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3141,357,0 chrII 639808 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.07;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3046,339,0 chrII 639832 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.08;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2800,309,0 chrII 639988 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.45;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4028,453,0 chrII 640000 . C A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.69;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4159,462,0 chrII 640150 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.62;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3524,402,0 chrII 640627 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.630;QD=24.41;ReadPosRankSum=1.552;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3784,408,0 chrII 641071 . T G 3295.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.11;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3295,369,0 chrII 641230 . C A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.55;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3676,402,0 chrII 641289 . A G 3019 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.68;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3052,339,0 chrII 641302 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.9928;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.73;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2933,321,0 chrII 641368 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=154;Dels=0.00;FS=5.793;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.608;QD=21.59;ReadPosRankSum=2.955;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3325,372,0 chrII 641433 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=153;Dels=0.00;FS=3.027;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.415;QD=22.82;ReadPosRankSum=2.336;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3491,393,0 chrII 641467 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=149;Dels=0.00;FS=6.290;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.171;QD=22.52;ReadPosRankSum=2.383;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3355,381,0 chrII 641914 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=179;Dels=0.00;FS=2.582;HaplotypeScore=17.6643;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.720;QD=20.90;ReadPosRankSum=2.422;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3741,429,0 chrII 642165 . A T 1663 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1696,183,0 chrII 642355 . T C 1078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=-0.561;QD=15.18;ReadPosRankSum=1.683;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1111,129,0 chrII 642356 . G C 1114 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=15.47;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1147,129,0 chrII 642406 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=16.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1437,156,0 chrII 642483 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.38;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2562,276,0 chrII 642492 . A G 2451 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.45;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2484,288,0 chrII 642581 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.2972;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=24.11;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3592,393,0 chrII 642776 . G C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.94;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4290,489,0 chrII 643134 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=23.64;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2681,291,0 chrII 643138 . C A 2514 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=22.65;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2547,282,0 chrII 643176 . G C 1783 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=21.48;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1816,204,0 chrII 643619 . C T 583 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=36;MQRankSum=0.480;QD=3.60;ReadPosRankSum=1.078;SB=-1.200e-02 GT:AD:DP:GQ:PL 1/1:40,122:162:32:616,32,0 chrII 644527 . T A 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.000;QD=25.69;ReadPosRankSum=1.707;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3494,375,0 chrII 645239 . T G 2831 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.45;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2864,324,0 chrII 645469 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.22;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2176,246,0 chrII 645676 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2417,258,0 chrII 646524 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.13;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4047,435,0 chrII 646649 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.53;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2825,327,0 chrII 646843 . A G 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=117;Dels=0.00;FS=9.028;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.909;QD=18.79;ReadPosRankSum=2.364;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2231,249,0 chrII 646846 . C A 2390 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.27;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2423,261,0 chrII 648179 . A C 3500.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.14;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3500,393,0 chrII 648208 . A G 2996 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.19;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3029,345,0 chrII 648386 . G T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.01;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3434,378,0 chrII 649183 . C G 2647 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.90;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2680,309,0 chrII 649196 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.297;DP=141;Dels=0.00;FS=5.211;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.211;QD=19.10;ReadPosRankSum=3.396;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:4,137:141:99:2726,312,0 chrII 649250 . G C 2518 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=16.46;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2551,291,0 chrII 649588 . C A 5997.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=23.0122;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.42;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:0,275:280:99:5997,640,0 chrII 649927 . A T 2393 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.28;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2426,261,0 chrII 650175 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.70;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2689,303,0 chrII 650256 . A G 189.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.712;DP=115;Dels=0.00;FS=0.728;HaplotypeScore=67.4244;MLEAC=1;MLEAF=0.500;MQ=54.95;MQ0=0;MQRankSum=2.698;QD=1.64;ReadPosRankSum=-5.214;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:73,41:115:99:219,0,918 chrII 650263 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=67.4244;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=12.08;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1289,147,0 chrII 650341 . A T 2833 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.79;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2866,309,0 chrII 650349 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.62;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2995,321,0 chrII 650356 . A G 2952 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.22;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2985,333,0 chrII 650411 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=149;Dels=0.00;FS=6.721;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-1.905;QD=20.26;ReadPosRankSum=1.394;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3051,342,0 chrII 650463 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.91;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3345,378,0 chrII 650619 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.227;HaplotypeScore=14.2047;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.141;QD=23.48;ReadPosRankSum=1.711;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3850,432,0 chrII 651114 . G A 3942.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.42;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3942,426,0 chrII 651616 . T A 5233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=281;Dels=0.00;FS=3.903;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.584;QD=18.62;ReadPosRankSum=1.707;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:5233,597,0 chrII 651861 . C G 3665.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=18.70;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3665,420,0 chrII 651879 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=206;Dels=0.00;FS=3.316;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.437;QD=19.53;ReadPosRankSum=1.715;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4024,468,0 chrII 652023 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.9000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.10;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3061,333,0 chrII 652047 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.23;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3239,357,0 chrII 652095 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.0750;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.93;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3369,384,0 chrII 652587 . T C 4717.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.82;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4717,537,0 chrII 652785 . A C 4835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.147;DP=254;Dels=0.00;FS=9.130;HaplotypeScore=30.6277;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.000;QD=19.04;ReadPosRankSum=3.342;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:4,248:254:99:4835,549,0 chrII 652830 . T C 4332.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.5982;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.25;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4332,483,0 chrII 652902 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.2469;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.50;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4407,483,0 chrII 653133 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=25.08;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2315,252,0 chrII 653275 . A G 2118 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.27;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2151,243,0 chrII 653327 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.30;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2184,234,0 chrII 653335 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.77;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2228,249,0 chrII 653440 . C A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.03;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3283,366,0 chrII 653620 . A T 2825 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.35;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2858,312,0 chrII 653712 . T A 2131 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.31;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2164,234,0 chrII 653760 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1764,195,0 chrII 653795 . C A 2237 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.60;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2270,243,0 chrII 653876 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.3800;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.11;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2503,270,0 chrII 653900 . C A 2095 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.95;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2128,234,0 chrII 653907 . A G 1929 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.20;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1962,219,0 chrII 653958 . T A 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.484;QD=19.34;ReadPosRankSum=1.701;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2180,243,0 chrII 654112 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.98;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2362,261,0 chrII 654135 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.67;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2822,318,0 chrII 654216 . C A 2504 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.87;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2537,285,0 chrII 654312 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.47;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2602,285,0 chrII 654360 . T C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.1277;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.678;QD=20.43;ReadPosRankSum=2.287;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2832,312,0 chrII 654362 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.9164;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.46;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2815,315,0 chrII 654500 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=16.49;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1764,192,0 chrII 654657 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.61;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3040,339,0 chrII 654678 . C T 2404 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.85;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2437,273,0 chrII 654779 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.11;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2952,336,0 chrII 654804 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.50;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3290,360,0 chrII 654897 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.21;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2938,321,0 chrII 654950 . T C 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=126;Dels=0.00;FS=2.713;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.462;QD=21.10;ReadPosRankSum=2.391;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2692,312,0 chrII 655192 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.93;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3125,342,0 chrII 655451 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.43;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2235,243,0 chrII 655536 . C A 1969 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.30;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2002,216,0 chrII 655552 . G T 1855 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=83.3365;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=20.38;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1888,201,0 chrII 655817 . C A 2914 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.94;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2947,321,0 chrII 655907 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3653,402,0 chrII 655951 . G T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3723,405,0 chrII 656080 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.967;QD=23.33;ReadPosRankSum=1.711;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3802,432,0 chrII 656242 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.378;QD=22.35;ReadPosRankSum=1.707;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3095,351,0 chrII 656275 . A C 2814 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.54;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2847,321,0 chrII 656281 . T G 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=134;Dels=0.00;FS=16.086;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.163;QD=20.30;ReadPosRankSum=3.327;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:4,130:134:99:2753,312,0 chrII 656453 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.71;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3459,372,0 chrII 656528 . G T 2544 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.12;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2577,279,0 chrII 656530 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.41;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2409,267,0 chrII 657139 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-1.159;QD=23.19;ReadPosRankSum=1.707;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3256,375,0 chrII 657146 . T G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.224;QD=22.30;ReadPosRankSum=1.661;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3278,369,0 chrII 657166 . C T 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.371;DP=144;Dels=0.00;FS=4.260;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.516;QD=19.99;ReadPosRankSum=1.227;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2912,321,0 chrII 657517 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.78;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3690,414,0 chrII 657582 . T A 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.430;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.872;QD=23.77;ReadPosRankSum=1.708;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3351,366,0 chrII 657611 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.4980;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.96;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2995,327,0 chrII 657655 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.177;QD=19.65;ReadPosRankSum=1.661;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2922,327,0 chrII 657674 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=19.70;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3086,342,0 chrII 657688 . A G 172.03 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=165.9011;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=0.97;SB=-1.058e+02 GT:AD:DP:GQ:PL 1/1:0,9:178:24:205,24,0 chrII 657808 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=3.608;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.520;QD=24.34;ReadPosRankSum=1.683;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3408,384,0 chrII 658070 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.283;QD=20.99;ReadPosRankSum=2.360;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2950,327,0 chrII 658079 . T C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=5.006;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.690;QD=20.83;ReadPosRankSum=1.706;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2824,318,0 chrII 658243 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=3.136;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.072;QD=21.61;ReadPosRankSum=1.666;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2324,261,0 chrII 658257 . A G 2380 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.88;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2413,270,0 chrII 658315 . A G 2672 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.84;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2705,309,0 chrII 658505 . T A 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=138;Dels=0.00;FS=8.038;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.844;QD=23.82;ReadPosRankSum=2.343;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3287,357,0 chrII 658570 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2923,315,0 chrII 658605 . T C 2426 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2459,282,0 chrII 658648 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2683,291,0 chrII 658797 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.33;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3616,396,0 chrII 659001 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1083;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.75;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3611,396,0 chrII 659010 . T C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.81;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3351,375,0 chrII 659058 . C A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.73;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3411,372,0 chrII 659208 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.7455;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.48;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2655,297,0 chrII 659367 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3356,375,0 chrII 660819 . C T 4910.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.43;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4910,534,0 chrII 660870 . T A 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=190;Dels=0.00;FS=3.493;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.021;QD=23.12;ReadPosRankSum=1.696;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4393,483,0 chrII 660972 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.45;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4063,441,0 chrII 661314 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.577;DP=165;Dels=0.00;FS=5.501;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.319;QD=20.87;ReadPosRankSum=2.957;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3443,390,0 chrII 661374 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.97;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3627,411,0 chrII 662073 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4553;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.34;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3166,348,0 chrII 662094 . A G 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.792;QD=17.96;ReadPosRankSum=1.683;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2565,294,0 chrII 662112 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.92;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2738,306,0 chrII 662250 . A C 2414 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.18;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2447,276,0 chrII 662272 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.00;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2259,246,0 chrII 662444 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.83;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1421,156,0 chrII 662526 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=22.72;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3168,345,0 chrII 662668 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=19.72;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2301,261,0 chrII 662699 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=16.71;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1921,213,0 chrII 662711 . C G 1307 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=11.46;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1340,153,0 chrII 662726 . G A 987 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=10.85;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1020,114,0 chrII 662737 . A G 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;MQRankSum=-0.754;QD=10.94;ReadPosRankSum=1.610;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:963,108,0 chrII 662749 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=12.76;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1156,129,0 chrII 662879 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=130;Dels=0.00;FS=5.687;HaplotypeScore=6.9065;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-0.434;QD=21.92;ReadPosRankSum=2.946;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2883,333,0 chrII 662883 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=22.18;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2761,315,0 chrII 663226 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.65;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3421,393,0 chrII 663370 . A G 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=203;Dels=0.00;FS=2.784;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.042;QD=22.67;ReadPosRankSum=2.401;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4601,525,0 chrII 663478 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.50;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3108,345,0 chrII 664165 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=187;Dels=0.00;FS=5.668;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.065;QD=19.20;ReadPosRankSum=2.941;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:3591,414,0 chrII 664174 . T C 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=201;Dels=0.00;FS=5.742;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.505;QD=18.24;ReadPosRankSum=2.935;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:3666,414,0 chrII 664761 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.4233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2615,288,0 chrII 665124 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=165;Dels=0.00;FS=5.248;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-1.303;QD=19.05;ReadPosRankSum=3.395;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:4,159:165:99:3177,360,0 chrII 665126 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=19.96;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3268,369,0 chrII 665139 . G C 2958 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=17.82;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:2991,345,0 chrII 665417 . A G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.56;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3903,432,0 chrII 665576 . C A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.74;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3300,354,0 chrII 665666 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5116;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3199,360,0 chrII 665746 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.98;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3861,417,0 chrII 666260 . C A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.81;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3929,426,0 chrII 666344 . G C 3742.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3742,420,0 chrII 666404 . A G 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.826;QD=22.36;ReadPosRankSum=1.652;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2985,336,0 chrII 666505 . A G 2804 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2837,318,0 chrII 666708 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.73;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2556,291,0 chrII 666849 . T G 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=113;Dels=0.00;FS=3.008;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-0.163;QD=22.22;ReadPosRankSum=2.363;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2544,297,0 chrII 666885 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.09;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2458,267,0 chrII 666886 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.18;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2565,276,0 chrII 666924 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=158;Dels=0.00;FS=7.232;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.490;QD=17.41;ReadPosRankSum=2.387;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2783,318,0 chrII 666966 . G C 2860 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.1743;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.46;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2893,333,0 chrII 666987 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.52;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2598,288,0 chrII 667170 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.94;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4333,471,0 chrII 667353 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4648,504,0 chrII 667557 . G A 5077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.0682;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.059;QD=22.87;ReadPosRankSum=2.091;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:2,217:222:99:5077,529,0 chrII 667779 . A G 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=218;Dels=0.00;FS=2.731;HaplotypeScore=10.6321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=2.055;QD=22.56;ReadPosRankSum=2.382;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4919,567,0 chrII 667995 . G A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.4894;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.45;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3454,390,0 chrII 668256 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.68;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3967,453,0 chrII 668373 . G T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.15;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4028,432,0 chrII 668585 . A G 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-1.832;QD=12.45;ReadPosRankSum=3.144;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:4,119:123:99:1564,177,0 chrII 668587 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=12.58;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:1606,174,0 chrII 668657 . T G 5132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.036;QD=20.20;ReadPosRankSum=2.972;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:3,251:254:99:5132,585,0 chrII 668867 . T C 7014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=327;Dels=0.00;FS=4.525;HaplotypeScore=19.5879;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.307;QD=21.45;ReadPosRankSum=1.711;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:1,325:327:99:7014,780,0 chrII 668968 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.1417;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.74;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3821,420,0 chrII 669083 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=161;Dels=0.00;FS=8.753;HaplotypeScore=10.9243;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.086;QD=20.66;ReadPosRankSum=2.418;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,156:161:99:3326,369,0 chrII 669107 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.240;QD=22.26;ReadPosRankSum=1.687;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3451,393,0 chrII 669158 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=145;Dels=0.00;FS=3.020;HaplotypeScore=11.8732;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.196;QD=21.15;ReadPosRankSum=2.381;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3100,360,0 chrII 669257 . C T 2916 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.13;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2949,318,0 chrII 669262 . C T 2869 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.10;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2902,318,0 chrII 669267 . T C 2736 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.069;QD=19.40;ReadPosRankSum=1.708;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2769,312,0 chrII 669359 . T C 2610 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.88;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2643,297,0 chrII 669610 . G T 2582 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.88;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2615,279,0 chrII 669624 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.50;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2636,282,0 chrII 669668 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.6722;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.72;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3340,360,0 chrII 669755 . G A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.9532;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.32;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4026,438,0 chrII 670056 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.96;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4217,462,0 chrII 670083 . T C 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=185;Dels=0.00;FS=2.736;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.206;QD=22.95;ReadPosRankSum=2.370;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4245,486,0 chrII 670150 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.62;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3687,402,0 chrII 670277 . G C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.577;QD=19.10;ReadPosRankSum=1.259;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,182:188:99:3591,408,0 chrII 670302 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.18;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3935,441,0 chrII 670335 . C G 3474.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.05;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3474,399,0 chrII 670527 . G T 3057 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.98;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3090,330,0 chrII 670742 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.479;QD=23.42;ReadPosRankSum=1.687;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3560,414,0 chrII 671089 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3490,408,0 chrII 671166 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7584;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.78;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2423,264,0 chrII 671376 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=99;Dels=0.00;FS=2.989;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.540;QD=21.75;ReadPosRankSum=2.400;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2186,249,0 chrII 671533 . A G 2314 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.83;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2347,267,0 chrII 672045 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.84;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3385,375,0 chrII 672200 . A C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.724;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.210;QD=20.32;ReadPosRankSum=1.680;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2736,309,0 chrII 672217 . T A 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.910;QD=20.91;ReadPosRankSum=1.682;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2939,318,0 chrII 672339 . T A 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=4.676;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.552;QD=20.43;ReadPosRankSum=1.706;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2791,306,0 chrII 672354 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.03;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2917,318,0 chrII 672540 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.90;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1983,222,0 chrII 672553 . T C 2181 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.97;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2214,246,0 chrII 672596 . C G 2032 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.98;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2065,240,0 chrII 672610 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.32;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2250,243,0 chrII 672652 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.49;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2287,249,0 chrII 672914 . A T 2681 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=6.9383;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.72;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2714,303,0 chrII 673044 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.79;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3473,390,0 chrII 673212 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.08;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3168,363,0 chrII 673284 . T G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=4.214;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.018;QD=21.41;ReadPosRankSum=1.696;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2110,243,0 chrII 673311 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=21.10;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1784,192,0 chrII 673338 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=21.68;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1681,180,0 chrII 673342 . T A 1605 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=20.06;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1638,183,0 chrII 673390 . G T 1650 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.12;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1683,183,0 chrII 673391 . G T 1524 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.59;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1557,180,0 chrII 673645 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1545,165,0 chrII 673689 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2119,240,0 chrII 674021 . G A 2071 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2104,231,0 chrII 674175 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.48;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2101,231,0 chrII 674209 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.06;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2546,279,0 chrII 674295 . T A 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.758;QD=24.11;ReadPosRankSum=1.710;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3858,423,0 chrII 674379 . A G 4034.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.69;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4034,468,0 chrII 674466 . G A 5415.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.24;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5415,597,0 chrII 674844 . A G 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=143;Dels=0.00;FS=6.035;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.754;QD=19.02;ReadPosRankSum=2.937;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2753,318,0 chrII 674964 . C T 3193 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.81;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3226,351,0 chrII 675018 . T C 2565 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.11;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2598,297,0 chrII 675105 . A T 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.600;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.244;QD=20.15;ReadPosRankSum=3.685;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:5,70:75:99:1544,174,0 chrII 675146 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.29;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1798,195,0 chrII 675204 . T A 1654 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.7150;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.48;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1687,186,0 chrII 675236 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1492,165,0 chrII 675714 . G C 2045 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.53;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2078,240,0 chrII 676020 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.07;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3385,369,0 chrII 676110 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=22.53;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2759,312,0 chrII 676125 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=23.06;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2823,315,0 chrII 676163 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=5.241;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.933;QD=21.71;ReadPosRankSum=1.643;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2573,297,0 chrII 676183 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.69;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2462,264,0 chrII 676247 . T C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=81;Dels=0.00;FS=5.911;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.844;QD=19.33;ReadPosRankSum=1.688;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,77:81:99:1599,177,0 chrII 676264 . A G 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=88;Dels=0.00;FS=2.603;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.058;QD=20.11;ReadPosRankSum=2.873;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:3,84:88:99:1803,207,0 chrII 676330 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=20.81;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2218,249,0 chrII 676339 . T C 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=2.944;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.252;QD=20.85;ReadPosRankSum=2.344;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1972,222,0 chrII 676341 . A C 1939 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.20;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1972,219,0 chrII 676411 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.65;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1635,186,0 chrII 676443 . T C 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.381;QD=23.61;ReadPosRankSum=1.688;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1898,213,0 chrII 676498 . T C 2307 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.56;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2340,267,0 chrII 676632 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.346;QD=23.47;ReadPosRankSum=1.708;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3427,396,0 chrII 676822 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.20;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3530,414,0 chrII 676851 . T G 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.237;DP=163;Dels=0.00;FS=6.903;HaplotypeScore=14.1820;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.069;QD=22.66;ReadPosRankSum=1.198;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3693,398,0 chrII 677014 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.78;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3372,381,0 chrII 677110 . T C 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=17.3341;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.836;QD=22.78;ReadPosRankSum=2.420;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,164:171:99:3896,441,0 chrII 677179 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0643;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.773;QD=23.55;ReadPosRankSum=1.634;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4168,465,0 chrII 677719 . A G 2878 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2911,330,0 chrII 678352 . C T 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=151;Dels=0.00;FS=6.061;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.020;QD=19.98;ReadPosRankSum=2.740;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3050,345,0 chrII 678353 . T A 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=152;Dels=0.00;FS=9.090;HaplotypeScore=5.2848;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.328;QD=20.11;ReadPosRankSum=3.125;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3089,345,0 chrII 678648 . C T 4011.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.1385;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.79;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4011,447,0 chrII 678844 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.585;DP=166;Dels=0.00;FS=3.254;HaplotypeScore=11.5360;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.081;QD=19.27;ReadPosRankSum=1.060;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3231,356,0 chrII 679150 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.63;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3417,387,0 chrII 679276 . A C 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.059;QD=17.67;ReadPosRankSum=1.631;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1853,219,0 chrII 679318 . C A 2253 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.86;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2286,255,0 chrII 679467 . G A 685 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=11.1825;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=16.71;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:718,78,0 chrII 679490 . T A 728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-1.050;QD=13.74;ReadPosRankSum=2.357;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:81:761,81,0 chrII 679544 . T C 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-0.464;QD=15.90;ReadPosRankSum=2.258;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1257,147,0 chrII 679740 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.51;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3579,399,0 chrII 679830 . A G 3871.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.7246;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.46;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3871,429,0 chrII 680200 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.14;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2847,312,0 chrII 680236 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.2269;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.69;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2921,336,0 chrII 680550 . T C 2373 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.77;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2406,285,0 chrII 681346 . A G 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.179;HaplotypeScore=5.9182;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.410;QD=21.23;ReadPosRankSum=1.706;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2814,327,0 chrII 681450 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.01;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3024,330,0 chrII 681557 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.44;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2636,288,0 chrII 681860 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.48;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1786,198,0 chrII 681865 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=56.0575;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=19.46;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1648,183,0 chrII 681905 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=13.05;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:894,99,0 chrII 681928 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4436;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=13.56;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1050,117,0 chrII 682038 . T C 766 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=60.7663;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=15.63;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:799,93,0 chrII 682145 . G T 1219 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=17.67;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1252,138,0 chrII 682168 . G T 1228 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.06;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1261,138,0 chrII 682332 . T C 2203 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.18;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2236,249,0 chrII 682449 . T C 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=3.040;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.025;QD=20.75;ReadPosRankSum=2.399;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3062,339,0 chrII 682941 . G T 5148.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.45;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5148,561,0 chrII 683370 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.058;QD=23.04;ReadPosRankSum=1.695;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4309,477,0 chrII 683415 . C T 4948.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=16.1660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.39;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4948,549,0 chrII 683477 . T C 5678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=243;Dels=0.00;FS=2.806;HaplotypeScore=12.7177;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.117;QD=23.37;ReadPosRankSum=2.399;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,239:243:99:5678,645,0 chrII 683592 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.26;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3230,357,0 chrII 684468 . C A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3393,369,0 chrII 684585 . G T 2030 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.07;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2063,225,0 chrII 684926 . C A 1733 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=24.41;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1766,192,0 chrII 685165 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.30;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3499,393,0 chrII 685208 . C T 2133 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.12;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2166,234,0 chrII 685283 . T G 1765 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.06;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1798,207,0 chrII 685306 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.24;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2146,246,0 chrII 686563 . G A 3146 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3179,351,0 chrII 686624 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.53;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3097,339,0 chrII 686762 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.34;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3699,408,0 chrII 687236 . C T 2897 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.57;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2930,336,0 chrII 687240 . T C 2950 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.16;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2983,327,0 chrII 687341 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=158;Dels=0.00;FS=3.032;HaplotypeScore=12.8402;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.354;QD=21.14;ReadPosRankSum=1.252;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3340,350,0 chrII 687665 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.825;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.367;QD=22.16;ReadPosRankSum=1.709;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3368,375,0 chrII 687872 . T A 3047 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3080,339,0 chrII 688355 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.2470;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.83;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4300,483,0 chrII 688364 . G A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.48;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4531,492,0 chrII 688475 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2818,300,0 chrII 688640 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.79;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2793,306,0 chrII 688700 . A T 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.788;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.619;QD=24.12;ReadPosRankSum=1.675;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2976,327,0 chrII 689156 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.13;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3789,411,0 chrII 689438 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3204,357,0 chrII 690155 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.70;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3233,363,0 chrII 690416 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2942,309,0 chrII 690901 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.99;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3983,429,0 chrII 691430 . T C 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=198;Dels=0.00;FS=5.730;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.852;QD=22.04;ReadPosRankSum=2.934;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:3,194:198:99:4363,483,0 chrII 692083 . C A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.79;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3471,378,0 chrII 692640 . A T 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=4.851;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.913;QD=21.29;ReadPosRankSum=1.669;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1204,132,0 chrII 692659 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.17;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1279,144,0 chrII 692752 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2231,240,0 chrII 692874 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=3.042;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.668;QD=20.23;ReadPosRankSum=2.411;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2622,303,0 chrII 692883 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.27;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2628,294,0 chrII 692988 . A G 3720.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3720,417,0 chrII 693069 . A T 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=6.657;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.246;QD=24.67;ReadPosRankSum=2.413;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3355,369,0 chrII 693111 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.198;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.903;QD=23.05;ReadPosRankSum=0.293;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3273,372,0 chrII 693907 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2827,321,0 chrII 694151 . T A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.43;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3273,360,0 chrII 694512 . A G 1201 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.447;QD=19.37;ReadPosRankSum=1.676;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1234,141,0 chrII 694515 . C T 1255 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1288,138,0 chrII 694808 . A G 316 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:42:349,42,0 chrII 694928 . A G 873 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:99:906,99,0 chrII 695020 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.80;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1580,174,0 chrII 695368 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.099;QD=21.03;ReadPosRankSum=1.710;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3323,381,0 chrII 695575 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=3.379;HaplotypeScore=15.0328;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.262;QD=21.75;ReadPosRankSum=1.692;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3762,435,0 chrII 696271 . A T 2728 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.12;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2761,306,0 chrII 696544 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.83;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3813,420,0 chrII 696571 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=167;Dels=0.00;FS=3.031;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.443;QD=21.68;ReadPosRankSum=2.390;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3620,408,0 chrII 696781 . A G 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=3.210;HaplotypeScore=13.5589;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.954;QD=23.28;ReadPosRankSum=1.693;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4144,471,0 chrII 696859 . A C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.445;QD=22.23;ReadPosRankSum=1.675;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4046,456,0 chrII 696907 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=214;Dels=0.00;FS=2.925;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.298;QD=21.65;ReadPosRankSum=2.345;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,210:214:99:4634,531,0 chrII 697171 . T C 5264.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.93;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5264,582,0 chrII 697340 . A G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.550;QD=22.45;ReadPosRankSum=1.706;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3019,342,0 chrII 697455 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.62;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2612,282,0 chrII 698191 . C A 1413 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.12;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1446,165,0 chrII 698306 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=27.39;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3128,330,0 chrII 698855 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=3.495;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.689;QD=24.05;ReadPosRankSum=1.646;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3872,435,0 chrII 699125 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.97;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2098,228,0 chrII 699212 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.16;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4204,456,0 chrII 699308 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=153;Dels=0.00;FS=4.875;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.337;QD=23.42;ReadPosRankSum=3.322;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3583,405,0 chrII 699357 . G C 3904.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8752;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.44;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3904,438,0 chrII 699425 . T C 5044.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.8420;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.84;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5044,585,0 chrII 699448 . G A 4758.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.03;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4758,519,0 chrII 699560 . T C 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=217;Dels=0.00;FS=6.081;HaplotypeScore=17.3350;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.838;QD=22.21;ReadPosRankSum=2.245;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:4820,516,0 chrII 699641 . C T 4971.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.4989;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.78;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4971,558,0 chrII 699833 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=28.7311;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.57;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4094,447,0 chrII 699878 . A G 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=184;Dels=0.00;FS=8.894;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.272;QD=22.23;ReadPosRankSum=3.374;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:99:4090,456,0 chrII 699984 . G A 2458 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=122.8794;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=17.56;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2491,273,0 chrII 699991 . T C 2327 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=5.328;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;MQRankSum=-0.899;QD=17.50;ReadPosRankSum=1.706;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2360,264,0 chrII 699992 . T C 2154 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=16.07;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2187,264,0 chrII 700005 . A G 2126 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=17.01;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2159,240,0 chrII 700097 . T C 2076 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.85;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2109,234,0 chrII 700109 . T A 1598 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.31;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1631,186,0 chrII 700310 . T C 359 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;QD=17.10;SB=-6.640e-03 GT:AD:DP:GQ:PL 1/1:0,20:21:48:392,48,0 chrII 700423 . T C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.8547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.288;QD=23.71;ReadPosRankSum=2.350;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,47:49:99:1195,132,0 chrII 700482 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.65;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2480,279,0 chrII 700502 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.74;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2750,318,0 chrII 700714 . G A 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.1179;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.055;QD=20.86;ReadPosRankSum=1.386;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:1,249:252:99:5257,556,0 chrII 700742 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.59;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:4388,492,0 chrII 700769 . G A 4192.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.18;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4192,450,0 chrII 701043 . T C 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=3.499;HaplotypeScore=13.9034;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.737;QD=21.50;ReadPosRankSum=1.695;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4064,459,0 chrII 701162 . A G 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=161;Dels=0.00;FS=9.529;HaplotypeScore=12.5510;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.444;QD=21.26;ReadPosRankSum=2.956;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3423,393,0 chrII 701195 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.61;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3063,339,0 chrII 701230 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=18.28;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2921,312,0 chrII 701232 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=17.01;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2721,303,0 chrII 701245 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=17.32;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2874,312,0 chrII 701290 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.6379;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.07;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3871,420,0 chrII 701303 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.76;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4051,447,0 chrII 701345 . G A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.81;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3931,435,0 chrII 701354 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=4.052;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-1.732;QD=18.63;ReadPosRankSum=1.683;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,210:214:99:3987,447,0 chrII 701399 . G A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.69;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4576,501,0 chrII 701458 . T C 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=227;Dels=0.00;FS=8.027;HaplotypeScore=12.3252;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.267;QD=22.25;ReadPosRankSum=3.352;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:4,221:227:99:5051,570,0 chrII 701579 . T G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=231;Dels=0.00;FS=9.436;HaplotypeScore=22.2746;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.594;QD=19.36;ReadPosRankSum=2.970;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:3,227:231:99:4473,504,0 chrII 701642 . C T 5576.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.8271;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.87;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5576,609,0 chrII 701768 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.57;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2831,309,0 chrII 701800 . A G 2875 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.62;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2908,324,0 chrII 702004 . T C 790 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=109.8263;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=17.56;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:96:823,96,0 chrII 702051 . T C 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=1.188;QD=14.70;ReadPosRankSum=-0.594;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1062,120,0 chrII 702500 . G C 5970.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=8.1208;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.88;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5970,660,0 chrII 702521 . T G 5260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=225;Dels=0.00;FS=3.150;HaplotypeScore=13.0731;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.024;QD=23.38;ReadPosRankSum=1.716;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:1,221:225:99:5260,582,0 chrII 702582 . C T 5624.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.6562;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.63;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5624,612,0 chrII 702600 . C T 6005.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.4423;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.00;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:6005,655,0 chrII 702673 . A G 6342.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=12.3535;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.87;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:6342,741,0 chrII 702716 . C T 4849.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=23.4429;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.08;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,225:230:99:4849,540,0 chrII 703003 . C A 4158.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.18;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4158,474,0 chrII 703042 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2649;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.19;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4260,477,0 chrII 703256 . C G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5272;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.20;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4071,468,0 chrII 703363 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.19;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4216,477,0 chrII 703392 . G A 4241.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.97;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4241,462,0 chrII 703618 . G A 4751.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.76;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4751,513,0 chrII 703663 . C T 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=17.6127;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.032;QD=22.39;ReadPosRankSum=-0.227;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:4477,507,0 chrII 703771 . G A 4611.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.7999;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.14;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4611,528,0 chrII 703874 . T C 5390.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.84;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,231:236:99:5390,594,0 chrII 703999 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=190;Dels=0.00;FS=14.315;HaplotypeScore=14.5658;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.683;QD=17.99;ReadPosRankSum=2.844;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:3,185:190:99:3418,393,0 chrII 704016 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.33;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3944,441,0 chrII 704109 . A G 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.7952;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=1.133;QD=22.47;ReadPosRankSum=1.711;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3663,405,0 chrII 704219 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.82;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1802,201,0 chrII 704282 . T A 1965 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=20.05;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1998,219,0 chrII 704284 . C T 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.393;DP=97;Dels=0.00;FS=7.066;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.419;QD=18.28;ReadPosRankSum=-2.323;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1806,172,0 chrII 704315 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3620;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.87;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1695,183,0 chrII 704337 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.44;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1084,117,0 chrII 704358 . G T 999 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;QD=21.26;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1032,111,0 chrII 704507 . A T 460 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.69;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:493,54,0 chrII 704528 . C T 662 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.47;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:695,75,0 chrII 704536 . C A 600 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=13.04;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:72:633,72,0 chrII 704560 . C T 856 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=16.46;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:889,96,0 chrII 704922 . A G 5089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=217;Dels=0.00;FS=3.774;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.678;QD=23.45;ReadPosRankSum=1.716;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5089,570,0 chrII 705302 . A C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.0703;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.377;QD=22.62;ReadPosRankSum=1.682;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3200,369,0 chrII 705344 . C T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.70;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3383,369,0 chrII 705627 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=167;Dels=0.00;FS=2.615;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.699;QD=21.07;ReadPosRankSum=2.391;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3519,393,0 chrII 705633 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.65;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3659,399,0 chrII 706449 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.3169;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.96;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3426,384,0 chrII 706521 . A T 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.942;QD=22.66;ReadPosRankSum=1.709;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3376,375,0 chrII 706904 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3419,366,0 chrII 706949 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.75;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2808,318,0 chrII 706983 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.20;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2214,246,0 chrII 707207 . A G 1381 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.25;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1414,162,0 chrII 707223 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=18.12;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1428,159,0 chrII 707238 . G T 1379 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.32;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1412,156,0 chrII 707296 . A G 2278 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.81;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2311,261,0 chrII 707304 . T C 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.790;QD=19.57;ReadPosRankSum=1.702;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2264,258,0 chrII 707578 . T C 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=104;Dels=0.00;FS=3.043;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.490;QD=23.17;ReadPosRankSum=2.354;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2443,270,0 chrII 707683 . A T 2271 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.05;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2304,252,0 chrII 707899 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1331,150,0 chrII 708202 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3161,345,0 chrII 708354 . T C 5253.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5253,603,0 chrII 708750 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.68;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2591,282,0 chrII 708909 . A G 2691 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.06;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2724,318,0 chrII 708952 . T C 3870.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.81;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3870,429,0 chrII 708971 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=6.629;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.619;QD=23.80;ReadPosRankSum=2.415;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3379,375,0 chrII 709271 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.3937;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.27;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2567,282,0 chrII 710109 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.535;QD=21.87;ReadPosRankSum=1.707;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3051,348,0 chrII 710293 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.41;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3441,384,0 chrII 710330 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.9636;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.23;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3465,384,0 chrII 710520 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.200;DP=128;Dels=0.00;FS=13.026;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.216;QD=21.37;ReadPosRankSum=2.816;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:3,123:128:99:2769,312,0 chrII 710784 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.29;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2583,282,0 chrII 710807 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.33;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2355,255,0 chrII 711099 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=206;Dels=0.00;FS=4.686;HaplotypeScore=18.6869;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.101;QD=20.68;ReadPosRankSum=-0.213;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4261,474,0 chrII 711231 . T C 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.769;HaplotypeScore=6.8397;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.679;QD=23.19;ReadPosRankSum=1.706;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3071,342,0 chrII 711395 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=105;Dels=0.00;FS=6.970;HaplotypeScore=10.7545;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.677;QD=19.94;ReadPosRankSum=2.401;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,100:105:99:2127,237,0 chrII 711416 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.44;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2306,249,0 chrII 711439 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.315;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.233;QD=21.05;ReadPosRankSum=1.615;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2538,285,0 chrII 711554 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=131;Dels=0.00;FS=4.944;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.244;QD=22.82;ReadPosRankSum=1.705;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,127:131:99:3022,342,0 chrII 711722 . G A 4903.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.89;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4903,523,0 chrII 711792 . C T 4046.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.29;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4046,438,0 chrII 711804 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=3.580;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.787;QD=20.22;ReadPosRankSum=1.658;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3821,423,0 chrII 711873 . C G 4717.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.2209;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.68;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4717,522,0 chrII 712022 . C G 279.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026;DP=138;Dels=0.00;FS=287.321;HaplotypeScore=13.3529;MLEAC=1;MLEAF=0.500;MQ=56.75;MQ0=0;MQRankSum=-1.103;QD=2.02;ReadPosRankSum=-7.204;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:94,42:138:99:309,0,1585 chrII 712034 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.85;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2137,246,0 chrII 712082 . G A 3112 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.76;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3145,345,0 chrII 712145 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.928;DP=156;Dels=0.00;FS=3.095;HaplotypeScore=6.7663;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.196;QD=19.50;ReadPosRankSum=-0.123;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3075,345,0 chrII 712159 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.02;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3134,339,0 chrII 712199 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.77;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2924,327,0 chrII 712259 . A G 3168 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.79;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3201,357,0 chrII 712456 . C A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.82;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3788,414,0 chrII 712466 . C A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.14;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3608,399,0 chrII 712622 . C A 2878 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.13;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2911,324,0 chrII 712877 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.67;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1937,210,0 chrII 713038 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7603;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.13;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3040,339,0 chrII 713805 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.620;QD=22.39;ReadPosRankSum=1.629;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3078,351,0 chrII 714130 . G C 3036 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=600.2009;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=20.38;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3069,348,0 chrII 714277 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.37;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2982,327,0 chrII 714536 . A G 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.617;HaplotypeScore=9.7600;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=1.582;QD=22.32;ReadPosRankSum=1.694;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2109,243,0 chrII 715476 . A G 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=211;Dels=0.00;FS=2.959;HaplotypeScore=11.9853;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.098;QD=21.06;ReadPosRankSum=2.414;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4443,507,0 chrII 715932 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.458;QD=21.09;ReadPosRankSum=1.707;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2901,324,0 chrII 716290 . T C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=104;Dels=0.00;FS=3.596;HaplotypeScore=8.5620;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.194;QD=21.93;ReadPosRankSum=1.698;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2314,261,0 chrII 716325 . C T 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=4.004;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.236;QD=21.51;ReadPosRankSum=-1.063;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1926,216,0 chrII 716328 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.35;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1933,219,0 chrII 716467 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.44;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1505,162,0 chrII 716483 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.54;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1676,186,0 chrII 716508 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.16;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1747,192,0 chrII 716738 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.00;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2427,267,0 chrII 716762 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=114;Dels=0.00;FS=3.127;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.364;QD=20.88;ReadPosRankSum=1.701;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2413,267,0 chrII 716927 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.275;QD=22.26;ReadPosRankSum=2.421;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3874,438,0 chrII 717374 . G A 5180.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=21.8397;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.14;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5180,573,0 chrII 717439 . G A 6590.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=16.3961;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.88;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:6590,709,0 chrII 718117 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1271,138,0 chrII 718246 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.46;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1750,192,0 chrII 718258 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.55;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1806,198,0 chrII 718330 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.25;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3278,384,0 chrII 718659 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.89;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2957,333,0 chrII 718802 . T C 2386 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2419,276,0 chrII 718888 . G A 2341 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.90;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2374,255,0 chrII 718981 . G T 2868 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2901,318,0 chrII 719047 . T C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.685;QD=23.36;ReadPosRankSum=1.678;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3047,333,0 chrII 719269 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=170;Dels=0.00;FS=3.021;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.802;QD=22.01;ReadPosRankSum=2.377;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3741,429,0 chrII 719463 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.16;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3150,339,0 chrII 719770 . A C 1859 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.70;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1892,213,0 chrII 719773 . T C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=112;Dels=0.00;FS=7.231;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-1.769;QD=16.12;ReadPosRankSum=2.362;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1839,195,0 chrII 719899 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.16;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2715,306,0 chrII 720010 . G T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=25.30;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3415,378,0 chrII 720178 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.402;QD=23.62;ReadPosRankSum=1.711;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3968,447,0 chrII 720340 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.8167;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.90;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3389,378,0 chrII 720379 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.388;QD=21.93;ReadPosRankSum=1.706;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2971,339,0 chrII 720651 . T C 74.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;DP=60;Dels=0.00;FS=8.925;HaplotypeScore=49.4288;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=-1.326;QD=1.23;ReadPosRankSum=-2.149;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:46,13:60:99:104,0,355 chrII 720822 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.66;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2496,276,0 chrII 720905 . A G 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.452;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.620;QD=19.37;ReadPosRankSum=1.620;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2454,273,0 chrII 720973 . A G 3092 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.32;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3125,348,0 chrII 721079 . C G 2695 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.73;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2728,309,0 chrII 721088 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.05;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2877,312,0 chrII 721141 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.17;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2391,264,0 chrII 721162 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.40;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2828,309,0 chrII 721476 . T C 3946.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.35;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3946,438,0 chrII 721566 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.88;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3414,384,0 chrII 721863 . T C 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=3.411;HaplotypeScore=12.2338;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.560;QD=20.61;ReadPosRankSum=1.707;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2857,327,0 chrII 721938 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=134;Dels=0.00;FS=3.037;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.176;QD=22.10;ReadPosRankSum=2.394;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2995,336,0 chrII 722145 . T C 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.479;QD=24.59;ReadPosRankSum=1.690;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4033,459,0 chrII 722533 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=19.12;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1352,147,0 chrII 722546 . A C 1116 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=15.94;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1149,132,0 chrII 722547 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=17.03;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1259,138,0 chrII 722576 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=13.58;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1445,162,0 chrII 722589 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=13.66;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1577,177,0 chrII 722617 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=14.80;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2149,243,0 chrII 722635 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.24;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2826,309,0 chrII 722781 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.263;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.229;QD=21.09;ReadPosRankSum=1.667;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3395,387,0 chrII 722946 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.504;QD=22.16;ReadPosRankSum=1.709;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3413,390,0 chrII 723006 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.31;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3659,408,0 chrII 723102 . G C 3581.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.97;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3581,420,0 chrII 723175 . G C 4835.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=21.1941;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.13;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4835,546,0 chrII 723232 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.3651;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.87;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3783,432,0 chrII 723346 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.186;QD=22.41;ReadPosRankSum=1.713;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3989,453,0 chrII 723385 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.3037;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.82;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3407,366,0 chrII 723393 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.9377;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=18.47;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3417,375,0 chrII 723572 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.46;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3132,342,0 chrII 723838 . T C 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.323;QD=22.55;ReadPosRankSum=1.701;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2559,288,0 chrII 723865 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.62;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2770,306,0 chrII 724096 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.876;QD=21.24;ReadPosRankSum=1.690;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3547,402,0 chrII 724222 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=137;Dels=0.00;FS=2.940;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.924;QD=23.05;ReadPosRankSum=2.414;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3191,363,0 chrII 724354 . G A 3138 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3171,360,0 chrII 724416 . C G 3124 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=15.7677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3157,357,0 chrII 724613 . T G 2223 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.1246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2256,258,0 chrII 724784 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.79;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1406,159,0 chrII 724953 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2064,225,0 chrII 725168 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.636;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.972;QD=20.28;ReadPosRankSum=1.711;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3346,387,0 chrII 725223 . G A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.0227;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.94;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4942,564,0 chrII 725260 . A C 5440.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=20.4687;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.76;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5440,615,0 chrII 725438 . G C 4483.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.23;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4483,501,0 chrII 725754 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.41;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3394,378,0 chrII 725897 . G A 4932.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.3593;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.94;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4932,526,0 chrII 726249 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=7.142;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.144;QD=22.70;ReadPosRankSum=2.382;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3292,366,0 chrII 726408 . A G 1808 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.83;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1841,210,0 chrII 726421 . T C 1613 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.12;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1646,183,0 chrII 726943 . A G 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.696;QD=21.96;ReadPosRankSum=1.715;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4501,510,0 chrII 726985 . C A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3813,414,0 chrII 727247 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.57;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2555,276,0 chrII 727268 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.41;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2812,303,0 chrII 727326 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.72;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2163,246,0 chrII 727581 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2283,258,0 chrII 727844 . G T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7978;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.11;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4021,447,0 chrII 727947 . C T 5216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=225;Dels=0.00;FS=3.791;HaplotypeScore=19.0510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.085;QD=23.18;ReadPosRankSum=1.670;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5216,576,0 chrII 728076 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.96;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3492,396,0 chrII 728314 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=20.99;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1691,189,0 chrII 728318 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=20.84;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1638,186,0 chrII 728328 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=19.36;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1446,165,0 chrII 728335 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=20.85;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1430,156,0 chrII 728411 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=24.22;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1656,177,0 chrII 728427 . C T 1376 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=20.24;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1409,162,0 chrII 728435 . G A 1312 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=19.29;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1345,150,0 chrII 728481 . G A 1042 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=16.81;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1075,120,0 chrII 728495 . A T 1045 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=15.14;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1078,120,0 chrII 728499 . C A 1089 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6722;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=15.34;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1122,129,0 chrII 728585 . G C 2234 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.69;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2267,255,0 chrII 728613 . A G 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=100;Dels=0.00;FS=6.734;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.452;QD=20.28;ReadPosRankSum=1.662;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2061,243,0 chrII 728657 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.12;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1935,219,0 chrII 728697 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.00;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2333,255,0 chrII 728914 . C A 2949 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6454;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.37;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2982,318,0 chrII 729061 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=3.299;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.238;QD=21.21;ReadPosRankSum=1.700;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2366,264,0 chrII 729072 . T C 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=6.543;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.175;QD=19.96;ReadPosRankSum=2.384;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2269,255,0 chrII 729234 . A G 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.601;QD=22.56;ReadPosRankSum=1.699;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2424,270,0 chrII 729547 . A G 2528 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.41;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2561,291,0 chrII 729670 . C A 2828 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.1487;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.92;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2861,312,0 chrII 730031 . T C 3165 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=25.12;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3198,354,0 chrII 730059 . T C 2808 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.80;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2841,318,0 chrII 730074 . G A 2549 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.17;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2582,282,0 chrII 730165 . T C 1966 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.84;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1999,222,0 chrII 730195 . T C 2023 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.86;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2056,240,0 chrII 730234 . T C 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.554;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.562;QD=21.87;ReadPosRankSum=1.698;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2264,252,0 chrII 730326 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=3.008;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.973;QD=22.68;ReadPosRankSum=2.364;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2641,300,0 chrII 730392 . C G 2563 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.68;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2596,303,0 chrII 730418 . G T 2852 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.77;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2885,321,0 chrII 730763 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.10;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2619,294,0 chrII 730801 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.34;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2881,309,0 chrII 730949 . T C 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=3.424;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.286;QD=21.90;ReadPosRankSum=1.653;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2946,339,0 chrII 730981 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.67;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2731,303,0 chrII 731181 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=138;Dels=0.00;FS=6.575;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.294;QD=21.86;ReadPosRankSum=2.343;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3049,342,0 chrII 731212 . G A 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8574;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.177;QD=18.43;ReadPosRankSum=1.487;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2374,273,0 chrII 731214 . A G 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=131;Dels=0.00;FS=5.989;HaplotypeScore=7.7370;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.633;QD=17.97;ReadPosRankSum=2.930;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:3,126:131:99:2387,276,0 chrII 731292 . T C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=117;Dels=0.00;FS=8.360;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.662;QD=20.68;ReadPosRankSum=2.366;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2452,282,0 chrII 731473 . A G 2556 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=10.964;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-0.176;QD=19.22;ReadPosRankSum=2.376;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2589,300,0 chrII 731475 . A T 2593 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.95;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2626,288,0 chrII 731483 . C T 2711 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=0.490;QD=18.70;ReadPosRankSum=0.872;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2744,297,0 chrII 731541 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.83;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3246,348,0 chrII 731564 . A G 2869 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.25;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2902,336,0 chrII 731596 . A G 2621 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.84;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2654,303,0 chrII 731907 . T C 2067 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.76;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2100,237,0 chrII 731934 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.53;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2511,285,0 chrII 731970 . A T 2442 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.40;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2475,273,0 chrII 732084 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.88;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3363,369,0 chrII 732123 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.4252;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.00;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2868,309,0 chrII 732126 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=136;Dels=0.00;FS=17.931;HaplotypeScore=5.7912;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.352;QD=18.70;ReadPosRankSum=3.339;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:4,128:136:99:2576,297,0 chrII 732337 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.24;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2835,306,0 chrII 732408 . G T 2723 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.10;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2756,297,0 chrII 732457 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2252,243,0 chrII 732496 . T C 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=4.363;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.049;QD=21.31;ReadPosRankSum=1.683;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1567,177,0 chrII 732591 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=10.417;HaplotypeScore=3.9631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.340;QD=22.25;ReadPosRankSum=2.379;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2369,282,0 chrII 732720 . A G 1646 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.1261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1679,198,0 chrII 732930 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2272,249,0 chrII 733230 . A G 2614 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.58;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2647,309,0 chrII 733320 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.17;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2514,282,0 chrII 733332 . A G 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=127;Dels=0.00;FS=12.367;HaplotypeScore=8.6340;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.137;QD=19.07;ReadPosRankSum=2.912;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:3,122:127:99:2455,276,0 chrII 733422 . G A 2220 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.37;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2253,249,0 chrII 733446 . A G 2184 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.33;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2217,246,0 chrII 733473 . C T 2035 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=16.41;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2068,222,0 chrII 733476 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=16.04;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2086,228,0 chrII 733629 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.29;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2409,264,0 chrII 733809 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.62;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2152,243,0 chrII 734046 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.88;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3271,360,0 chrII 734196 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.97;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3471,390,0 chrII 734277 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.43;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3585,399,0 chrII 734775 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=19.7942;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.25;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,173:177:99:4116,474,0 chrII 735096 . C T 6343.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.95;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,286:289:99:6343,711,0 chrII 735231 . C T 5685.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.27;SB=-3.279e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:5685,613,0 chrII 735240 . A T 5911.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.64;SB=-3.294e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:5911,648,0 chrII 735342 . G A 8232.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=27.4717;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.89;SB=-3.986e+03 GT:AD:DP:GQ:PL 1/1:0,376:376:99:8232,906,0 chrII 735399 . C T 5356.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.77;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5356,600,0 chrII 735582 . T C 4012.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.4639;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.86;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4012,444,0 chrII 736183 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=1;QD=23.29;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2781,303,0 chrII 736274 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.15;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3042,330,0 chrII 736377 . A G 3132 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.70;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3165,366,0 chrII 736426 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.37;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3826,438,0 chrII 736788 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.07;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4256,465,0 chrII 736809 . C T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0781;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.05;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4400,483,0 chrII 736851 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=231;Dels=0.00;FS=3.859;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.312;QD=17.92;ReadPosRankSum=1.687;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:4139,483,0 chrII 736863 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=230;Dels=0.00;FS=7.398;HaplotypeScore=2.4011;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.809;QD=17.10;ReadPosRankSum=2.375;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:3934,450,0 chrII 736887 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.9303;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.92;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4012,441,0 chrII 736946 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.24;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3764,414,0 chrII 737397 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=3.902;HaplotypeScore=9.7275;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.268;QD=20.75;ReadPosRankSum=1.625;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4047,450,0 chrII 737904 . T C 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6563;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.656;QD=19.40;ReadPosRankSum=1.689;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3196,381,0 chrII 737941 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=152;Dels=0.00;FS=16.509;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.766;QD=24.01;ReadPosRankSum=2.368;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3650,408,0 chrII 737979 . G C 4156.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.46;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4156,471,0 chrII 738015 . T G 4823.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.86;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4823,540,0 chrII 738213 . A C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=254;Dels=0.00;FS=3.349;HaplotypeScore=11.2914;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.321;QD=18.99;ReadPosRankSum=1.691;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:4824,546,0 chrII 738886 . C T 4466.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4466,483,0 chrII 738941 . T C 5307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.344;DP=247;Dels=0.00;FS=6.934;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.484;QD=21.49;ReadPosRankSum=1.103;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5307,603,0 chrII 739283 . A G 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=231;Dels=0.00;FS=7.183;HaplotypeScore=19.7602;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.534;QD=21.06;ReadPosRankSum=2.406;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:2,226:231:99:4864,558,0 chrII 739770 . T C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.353;QD=23.55;ReadPosRankSum=2.383;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2624,297,0 chrII 739813 . A G 3154 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.75;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3187,375,0 chrII 739892 . T G 3447.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.45;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3447,390,0 chrII 740026 . T C 5231.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.45;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5231,588,0 chrII 740035 . T A 4904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=225;Dels=0.00;FS=3.610;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.685;QD=21.80;ReadPosRankSum=1.717;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4904,546,0 chrII 740164 . G A 4469.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.80;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4469,483,0 chrII 740168 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=199;Dels=0.00;FS=7.478;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=1.184;QD=21.85;ReadPosRankSum=2.412;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4348,486,0 chrII 740350 . T C 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=7.796;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.192;QD=21.81;ReadPosRankSum=2.375;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4361,495,0 chrII 740362 . A G 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=205;Dels=0.00;FS=2.931;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.276;QD=21.03;ReadPosRankSum=2.365;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4311,474,0 chrII 740643 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.56;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3945,432,0 chrII 740659 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=18.43;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3685,411,0 chrII 740662 . C T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.79;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3701,408,0 chrII 740875 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.2303;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=20.27;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3811,432,0 chrII 740941 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.11;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3115,333,0 chrII 741057 . C G 2405 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2144;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.67;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2438,273,0 chrII 741097 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2381,267,0 chrII 741197 . G T 2926 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.59;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2959,321,0 chrII 741235 . A G 2911 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.06;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2944,327,0 chrII 741344 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.2233;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=21.74;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3543,411,0 chrII 741732 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.30;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4229,462,0 chrII 741956 . A C 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.229;QD=22.84;ReadPosRankSum=2.353;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2363,261,0 chrII 741980 . G C 1588 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.60;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1621,195,0 chrII 741999 . A G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.147;QD=20.01;ReadPosRankSum=1.683;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1454,168,0 chrII 742040 . C T 486 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=12.79;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:60:519,60,0 chrII 742138 . A G 1844 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1877,216,0 chrII 742472 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=125;Dels=0.00;FS=2.982;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.600;QD=21.06;ReadPosRankSum=2.371;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2666,309,0 chrII 742660 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.07;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1418,156,0 chrII 742691 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.79;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1188,129,0 chrII 742715 . A G 618 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.31;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:651,75,0 chrII 742721 . C G 534 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=17.23;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:567,66,0 chrII 742952 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.23;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2529,273,0 chrII 743622 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.04;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3014,327,0 chrII 743745 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.16;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4029,444,0 chrII 743899 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.600;QD=21.98;ReadPosRankSum=1.710;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3495,390,0 chrII 744063 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.94;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3879,417,0 chrII 744113 . C G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.0751;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.49;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3275,384,0 chrII 744342 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.04;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3162,348,0 chrII 744356 . A C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.058;QD=19.79;ReadPosRankSum=1.686;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2982,342,0 chrII 744402 . T C 2330 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.88;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2363,264,0 chrII 744519 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.61;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3279,369,0 chrII 744640 . A T 2202 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.20;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2235,240,0 chrII 744816 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.58;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3182,351,0 chrII 744823 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.5553;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.76;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3168,339,0 chrII 744869 . T C 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.025;QD=18.85;ReadPosRankSum=1.707;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2616,297,0 chrII 744922 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.97;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3620,402,0 chrII 745190 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.84;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2959,330,0 chrII 745192 . C G 2918 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.78;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2951,330,0 chrII 745280 . C A 3079 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.31;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3112,339,0 chrII 745349 . G C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.01;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3290,381,0 chrII 745499 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6688;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.619;QD=21.03;ReadPosRankSum=1.664;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3251,369,0 chrII 745793 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.22;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2633,282,0 chrII 745802 . T C 2446 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.55;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2479,276,0 chrII 745895 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2361,267,0 chrII 746478 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.12;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2884,327,0 chrII 746700 . A T 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=2.639;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.822;QD=22.87;ReadPosRankSum=2.414;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3212,354,0 chrII 746935 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2156,246,0 chrII 747177 . A T 2896 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2929,318,0 chrII 747498 . C T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.04;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3663,408,0 chrII 747528 . A C 4198.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.2644;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.69;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4198,474,0 chrII 747569 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.4452;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.37;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4138,453,0 chrII 748066 . T C 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.296;QD=20.68;ReadPosRankSum=1.690;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1729,192,0 chrII 748318 . A T 5128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=229;Dels=0.00;FS=2.950;HaplotypeScore=16.6837;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.616;QD=22.39;ReadPosRankSum=2.407;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5128,553,0 chrII 748404 . T C 4886.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.19;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:4886,564,0 chrII 748630 . C G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.6554;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-1.253;QD=20.61;ReadPosRankSum=1.536;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3339,372,0 chrII 748835 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.63;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3568,384,0 chrII 749056 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.85;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3954,429,0 chrII 749314 . C G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.03;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3723,423,0 chrII 749591 . A G 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=5.138;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.632;QD=24.36;ReadPosRankSum=1.672;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4239,480,0 chrII 749992 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=203;Dels=0.00;FS=9.160;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.404;QD=21.22;ReadPosRankSum=3.391;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:4,198:203:99:4308,501,0 chrII 750088 . T C 4118.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4118,459,0 chrII 750157 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=4.280;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.122;QD=21.19;ReadPosRankSum=1.708;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3063,342,0 chrII 750883 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5261;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.85;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2021,222,0 chrII 750970 . T C 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.582;QD=22.59;ReadPosRankSum=1.682;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1592,177,0 chrII 751213 . G C 440 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.4970;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=12.94;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:57:473,57,0 chrII 751970 . C A 3027 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5405;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.11;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3060,336,0 chrII 752106 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7666;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.30;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2814,327,0 chrII 752153 . C T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.8330;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.61;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3631,390,0 chrII 752195 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.63;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3230,366,0 chrII 752266 . A G 2251 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.2088;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.15;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2284,258,0 chrII 752292 . A G 2196 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=16.64;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2229,261,0 chrII 752329 . T C 1683 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=13.15;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:1716,198,0 chrII 752333 . C T 1922 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=14.24;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:1955,216,0 chrII 752344 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.6175;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=14.38;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2060,222,0 chrII 752361 . G A 2325 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.2636;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=16.37;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2358,261,0 chrII 752402 . T G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2006;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.873;QD=20.10;ReadPosRankSum=-0.374;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2586,288,0 chrII 752501 . G C 4378.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.67;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4378,501,0 chrII 752582 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=9.543;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=1.528;QD=23.68;ReadPosRankSum=2.417;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3599,405,0 chrII 752597 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=21.27;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3117,357,0 chrII 752604 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=21.60;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3327,378,0 chrII 752672 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.497;QD=20.69;ReadPosRankSum=1.682;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4262,477,0 chrII 752718 . T C 4639.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.99;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4639,507,0 chrII 752744 . C T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.76;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4215,480,0 chrII 752810 . T C 4731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=236;Dels=0.00;FS=2.976;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.889;QD=20.05;ReadPosRankSum=2.418;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:4731,531,0 chrII 752817 . A G 4799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=248;Dels=0.00;FS=3.553;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=0.344;QD=19.35;ReadPosRankSum=1.704;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:4799,540,0 chrII 752827 . G A 5011.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.73;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5011,549,0 chrII 752916 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.61;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3525,393,0 chrII 752933 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.87;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3411,372,0 chrII 753131 . T A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.54;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3538,381,0 chrII 753144 . C G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.60;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3251,366,0 chrII 753198 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.91;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2960,324,0 chrII 753226 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.3756;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.36;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2895,318,0 chrII 753273 . T G 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.063;QD=22.82;ReadPosRankSum=0.822;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3159,366,0 chrII 753440 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.64;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2132,231,0 chrII 753543 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=25.15;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1693,183,0 chrII 753573 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.31;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1475,171,0 chrII 753576 . A T 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.464;QD=19.53;ReadPosRankSum=1.635;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1459,156,0 chrII 753610 . T C 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.720;QD=17.32;ReadPosRankSum=1.626;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1159,129,0 chrII 753721 . T C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.630;QD=19.39;ReadPosRankSum=1.680;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1332,150,0 chrII 753723 . A G 1235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=4.840;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.353;QD=19.30;ReadPosRankSum=1.624;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1268,144,0 chrII 753759 . C T 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.337;QD=18.17;ReadPosRankSum=-0.722;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1341,124,0 chrII 753909 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.9780;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.53;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2373,267,0 chrII 753942 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=24.76;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2781,300,0 chrII 753990 . T C 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.088;QD=23.38;ReadPosRankSum=1.640;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2698,294,0 chrII 754087 . C T 2834 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.14;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2867,312,0 chrII 754103 . A T 2934 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.74;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2967,321,0 chrII 754139 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9119;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=22.45;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2390,258,0 chrII 754169 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=21.45;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2049,222,0 chrII 754188 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=18.36;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1667,189,0 chrII 754197 . T C 1646 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.92;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1679,192,0 chrII 754355 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=24.01;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2050,225,0 chrII 754404 . A G 1169 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=16.94;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1202,135,0 chrII 754416 . A G 1167 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=16.91;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1200,132,0 chrII 754436 . T C 951 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=14.41;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:984,111,0 chrII 754776 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3437,390,0 chrII 754911 . A G 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=144;Dels=0.00;FS=10.273;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.154;QD=22.07;ReadPosRankSum=2.951;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3211,372,0 chrII 755095 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.17;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3480,390,0 chrII 755157 . G T 3033 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.8909;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.26;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3066,336,0 chrII 755424 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.26;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3220,351,0 chrII 755817 . T C 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=78;Dels=0.00;FS=11.858;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.312;QD=21.53;ReadPosRankSum=2.858;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1712,189,0 chrII 755976 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.28;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2268,258,0 chrII 756002 . A G 1784 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.17;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1817,201,0 chrII 756042 . T C 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=3.178;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.987;QD=22.30;ReadPosRankSum=1.688;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1795,195,0 chrII 756063 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.99;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1859,207,0 chrII 756213 . G A 2005 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.78;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2038,231,0 chrII 756267 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.97;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2025,231,0 chrII 756348 . A G 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=106;Dels=0.00;FS=3.938;HaplotypeScore=7.9206;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.266;QD=21.00;ReadPosRankSum=1.699;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2259,267,0 chrII 756533 . C A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.55;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4074,441,0 chrII 756576 . A G 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=178;Dels=0.00;FS=15.944;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.967;QD=21.90;ReadPosRankSum=3.342;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3899,447,0 chrII 757029 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.33;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2459,267,0 chrII 757183 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.88;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2079,234,0 chrII 757437 . G T 2156 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.43;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2189,246,0 chrII 757522 . G A 2385 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.93;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2418,264,0 chrII 757551 . C A 2503 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.6449;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.75;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2536,276,0 chrII 757697 . T G 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.605;QD=22.93;ReadPosRankSum=1.691;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3875,441,0 chrII 758493 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.358;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.209;QD=21.76;ReadPosRankSum=1.656;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2013,234,0 chrII 758975 . T G 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=131;Dels=0.00;FS=8.645;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.486;QD=21.50;ReadPosRankSum=2.412;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2850,321,0 chrII 759402 . C A 2747 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4300;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.15;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2780,300,0 chrII 759424 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.31;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2196,243,0 chrII 759735 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3136,357,0 chrII 761431 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.7865;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.25;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3135,339,0 chrII 761529 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.75;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3515,396,0 chrII 761787 . G A 3919.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.1460;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.27;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3919,423,0 chrII 761814 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=21.01;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3908,420,0 chrII 761832 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=18.06;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3230,360,0 chrII 761853 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=-0.614;QD=13.46;ReadPosRankSum=1.710;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:2186,252,0 chrII 761880 . A G 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=6.459;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;MQRankSum=-1.855;QD=11.55;ReadPosRankSum=2.417;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:1800,210,0 chrII 761887 . A G 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=137;Dels=0.00;FS=10.235;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;MQRankSum=-2.081;QD=11.29;ReadPosRankSum=2.905;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:1580,177,0 chrII 761901 . A G 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=4.122;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;MQRankSum=-0.475;QD=8.75;ReadPosRankSum=1.704;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:1136,129,0 chrII 761904 . T C 1164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;MQRankSum=-1.076;QD=8.82;ReadPosRankSum=1.680;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:1197,135,0 chrII 761943 . A G 3014 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.8126;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.27;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3047,339,0 chrII 762515 . C A 1328 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=15.44;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1361,144,0 chrII 762523 . C A 1418 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=15.76;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1451,156,0 chrII 762665 . A G 685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.362;QD=21.41;ReadPosRankSum=2.297;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:81:718,81,0 chrII 763201 . A G 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=185;Dels=0.00;FS=5.924;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.592;QD=22.68;ReadPosRankSum=2.908;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4195,468,0 chrII 763288 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.4170;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.72;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3388,390,0 chrII 763300 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.37;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3344,387,0 chrII 763823 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.72;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3385,378,0 chrII 764311 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=160;Dels=0.00;FS=6.029;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.642;QD=21.19;ReadPosRankSum=2.956;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3391,390,0 chrII 764369 . T C 2861 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.67;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2894,321,0 chrII 764397 . C A 2548 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.45;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2581,282,0 chrII 764475 . C A 2713 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.06;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2746,300,0 chrII 764625 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.26;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2370,258,0 chrII 764652 . A G 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=112;Dels=0.00;FS=14.151;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.163;QD=17.82;ReadPosRankSum=3.378;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:4,107:112:99:2029,225,0 chrII 764667 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.64;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2409,261,0 chrII 764939 . A T 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=3.777;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.468;QD=22.26;ReadPosRankSum=1.666;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2370,264,0 chrII 765124 . C G 2439 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.78;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2472,273,0 chrII 765164 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.14;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3022,327,0 chrII 765537 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.5054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.151;QD=21.56;ReadPosRankSum=1.707;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3051,348,0 chrII 765697 . T C 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=3.501;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.295;QD=21.62;ReadPosRankSum=1.698;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2282,261,0 chrII 765957 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=167;Dels=0.00;FS=2.803;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.228;QD=22.89;ReadPosRankSum=2.420;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3823,429,0 chrII 766339 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.654;QD=22.33;ReadPosRankSum=1.713;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4019,459,0 chrII 766926 . A G 2241 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.19;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2274,255,0 chrII 766950 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=3.044;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.263;QD=23.34;ReadPosRankSum=2.406;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2647,297,0 chrII 767058 . T C 2101 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2134,240,0 chrII 767195 . T C 3174 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.69;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3207,366,0 chrII 767298 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.1046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2981,333,0 chrII 767375 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.60;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3062,336,0 chrII 767598 . A G 3075 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.81;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3108,357,0 chrII 767690 . A T 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=3.745;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.321;QD=21.96;ReadPosRankSum=1.552;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2997,321,0 chrII 767906 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.96;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3666,399,0 chrII 767991 . A G 1967 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.87;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2000,225,0 chrII 768174 . A G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=75.5881;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=1.069;QD=22.26;ReadPosRankSum=1.695;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2125,234,0 chrII 768214 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.08;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2099,237,0 chrII 768260 . T G 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=106;Dels=0.00;FS=5.400;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.610;QD=21.67;ReadPosRankSum=2.934;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2330,267,0 chrII 768857 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1385,156,0 chrII 768914 . G T 954 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=6.2712;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.64;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:987,111,0 chrII 769192 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.8631;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.37;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3803,426,0 chrII 769699 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.72;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3544,399,0 chrII 769903 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.4426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3326,366,0 chrII 770335 . T C 2762 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.41;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2795,318,0 chrII 770543 . G T 2209 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.55;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2242,246,0 chrII 770576 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=157;Dels=0.00;FS=3.558;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.501;QD=21.09;ReadPosRankSum=1.687;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,151:157:99:3311,375,0 chrII 770755 . C A 4405.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.0497;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.68;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4405,486,0 chrII 770842 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.93;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4014,435,0 chrII 770861 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=3.680;HaplotypeScore=6.6058;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.780;QD=21.62;ReadPosRankSum=1.713;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3934,435,0 chrII 770910 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=3.073;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.887;QD=22.13;ReadPosRankSum=1.699;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4648,516,0 chrII 771544 . G T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.31;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4194,462,0 chrII 771678 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3495,384,0 chrII 771772 . A G 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.296;QD=21.01;ReadPosRankSum=1.701;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2386,273,0 chrII 772004 . C T 1832 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.90;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1865,204,0 chrII 772129 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.29;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1816,204,0 chrII 772158 . A G 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=85;Dels=0.00;FS=11.631;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.265;QD=22.16;ReadPosRankSum=2.868;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:3,81:85:99:1917,213,0 chrII 772342 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.77;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2553,285,0 chrII 772685 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2046,222,0 chrII 772756 . T C 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=102;Dels=0.00;FS=2.686;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.398;QD=20.52;ReadPosRankSum=2.305;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2126,240,0 chrII 773089 . A T 2694 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.43;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2727,300,0 chrII 773713 . A T 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=109.1865;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-4.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,19:128:80:80,0,957 chrII 773821 . T A 315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.239;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.239;QD=15.00;ReadPosRankSum=1.569;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:39:348,39,0 chrII 773889 . A C 1411 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1444,165,0 chrII 774586 . T A 1151 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.228;QD=20.93;ReadPosRankSum=1.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1184,126,0 chrII 774595 . T C 1076 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.574;QD=19.56;ReadPosRankSum=2.872;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,52:55:99:1109,126,0 chrII 774954 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=150;Dels=0.00;FS=5.772;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.211;QD=21.90;ReadPosRankSum=2.857;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:3,145:150:99:3285,384,0 chrII 775070 . T C 4367.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.94;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,194:199:99:4367,489,0 chrII 775233 . G A 5226.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.44;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5226,573,0 chrII 775348 . G C 4427.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.70;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4427,507,0 chrII 775560 . T C 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.748;DP=238;Dels=0.00;FS=10.765;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.742;QD=19.61;ReadPosRankSum=3.754;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:5,232:238:99:4668,531,0 chrII 775563 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.59;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4642,528,0 chrII 775579 . C A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.8845;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.38;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:4545,501,0 chrII 776367 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.69;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1790,195,0 chrII 777303 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=201;Dels=0.00;FS=3.054;HaplotypeScore=11.8120;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.330;QD=22.54;ReadPosRankSum=1.680;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:4530,522,0 chrII 778150 . A C 3015 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.69;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3048,351,0 chrII 778183 . T A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1175;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.42;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3279,363,0 chrII 778285 . A G 2564 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1948;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.74;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2597,288,0 chrII 778544 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.80;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2556,273,0 chrII 778890 . G C 2485 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.20;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2518,282,0 chrII 778895 . T C 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=122;Dels=0.00;FS=2.678;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.595;QD=20.30;ReadPosRankSum=2.389;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2509,279,0 chrII 779836 . G T 2856 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.1785;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=15.35;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:2889,315,0 chrII 780187 . A G 10058.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.725;DP=441;Dels=0.00;FS=22.329;HaplotypeScore=31.2959;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=0.453;QD=22.81;ReadPosRankSum=3.718;SB=-3.957e+03 GT:AD:DP:GQ:PL 1/1:5,436:441:99:10058,1108,0 chrII 780308 . T A 10431.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=452;Dels=0.00;FS=3.003;HaplotypeScore=30.3083;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.285;QD=23.08;ReadPosRankSum=2.417;SB=-5.553e+03 GT:AD:DP:GQ:PL 1/1:2,450:452:99:10431,1138,0 chrII 780350 . G A 314.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.654;DP=640;Dels=0.01;FS=49.885;HaplotypeScore=67.6616;MLEAC=1;MLEAF=0.500;MQ=51.22;MQ0=0;MQRankSum=-2.739;QD=0.49;ReadPosRankSum=-2.921;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:462,171:635:99:344,0,7059 chrII 780395 . A T 1865.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;DP=641;Dels=0.00;FS=51.732;HaplotypeScore=460.0558;MLEAC=1;MLEAF=0.500;MQ=46.62;MQ0=0;MQRankSum=-2.111;QD=2.91;ReadPosRankSum=-1.546;SB=-1.650e+03 GT:AD:DP:GQ:PL 0/1:398,240:641:99:1895,0,2953 chrII 780404 . G A 359.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.182;DP=609;Dels=0.00;FS=66.703;HaplotypeScore=973.1564;MLEAC=1;MLEAF=0.500;MQ=45.09;MQ0=0;MQRankSum=-4.590;QD=0.59;ReadPosRankSum=-4.497;SB=-1.263e+03 GT:AD:DP:GQ:PL 0/1:408,201:609:99:389,0,2910 chrII 780428 . G A 1330 filter AC=2;AF=1.00;AN=2;BaseQRankSum=10.375;DP=481;Dels=0.00;FS=27.622;HaplotypeScore=47.1139;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;MQRankSum=9.551;QD=2.77;ReadPosRankSum=13.515;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:78,401:481:99:1363,159,0 chrII 780446 . G A 2011 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=363;Dels=0.01;FS=12.257;HaplotypeScore=61.2203;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;MQRankSum=-3.436;QD=5.54;ReadPosRankSum=-0.243;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:12,345:359:99:2044,237,0 chrII 780449 . G A 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=359;Dels=0.01;FS=7.580;HaplotypeScore=82.9926;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=0;MQRankSum=-2.944;QD=6.34;ReadPosRankSum=0.498;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:17,337:355:99:2308,251,0 chrII 780458 . G A 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=335;Dels=0.03;FS=2.333;HaplotypeScore=79.4474;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;MQRankSum=0.506;QD=8.56;ReadPosRankSum=3.114;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:4,321:325:99:2900,321,0 chrII 781183 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.80;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3689,399,0 chrII 781871 . T A 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=4.354;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.685;QD=24.35;ReadPosRankSum=1.707;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3384,375,0 chrII 782144 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.36;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4229,480,0 chrII 782369 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.54;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1831,207,0 chrII 782557 . T G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.899;QD=22.12;ReadPosRankSum=2.939;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3296,363,0 chrII 782574 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.25;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3118,342,0 chrII 782581 . A T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=17.98;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3291,357,0 chrII 783142 . C A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=21.48;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3373,378,0 chrII 783292 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.83;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2914,324,0 chrII 783589 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.5229;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.139;QD=22.87;ReadPosRankSum=0.872;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3166,363,0 chrII 783778 . C A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.90;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3298,357,0 chrII 783892 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4462;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.16;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3988,447,0 chrII 784213 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=184;Dels=0.00;FS=9.177;HaplotypeScore=11.9177;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.083;QD=20.23;ReadPosRankSum=1.128;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:3,178:184:99:3723,407,0 chrII 784270 . A C 3017 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=18.74;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3050,342,0 chrII 784284 . T A 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=158;Dels=0.00;FS=12.151;HaplotypeScore=4.7819;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-1.394;QD=20.32;ReadPosRankSum=2.787;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3244,357,0 chrII 784336 . T A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.10;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3765,423,0 chrII 784573 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.53;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2444,270,0 chrII 784600 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.30;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2206,240,0 chrII 784794 . T G 1023 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.67;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1056,117,0 chrII 784811 . A G 872 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=17.44;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:905,102,0 chrII 784837 . G A 98.26 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=2.18;SB=-5.303e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:15:131,15,0 chrII 784884 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.54;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1264,138,0 chrII 784895 . G C 1194 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.95;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1227,141,0 chrII 784913 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.37;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1561,171,0 chrII 785017 . T G 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=-0.061;QD=19.15;ReadPosRankSum=1.691;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1661,192,0 chrII 785028 . A T 1834 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.93;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1867,207,0 chrII 785060 . G A 2080 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.44;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2113,234,0 chrII 785066 . A C 2006 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=18.40;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2039,231,0 chrII 785146 . T C 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.238;QD=21.85;ReadPosRankSum=1.669;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2415,270,0 chrII 785196 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.08;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3187,342,0 chrII 785238 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.44;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3018,324,0 chrII 785248 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.51;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2802,306,0 chrII 785445 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.84;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3695,411,0 chrII 785573 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.6962;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.98;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2341,267,0 chrII 785614 . T A 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.578;HaplotypeScore=16.4602;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.443;QD=23.48;ReadPosRankSum=1.706;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3132,336,0 chrII 785746 . T C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.437;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.442;QD=21.41;ReadPosRankSum=1.658;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2067,231,0 chrII 785852 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=58.2242;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.57;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1667,186,0 chrII 785908 . G T 2496 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=12.4215;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.05;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2529,282,0 chrII 786053 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=4.815;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.732;QD=20.25;ReadPosRankSum=1.594;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2078,240,0 chrII 786204 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1769,195,0 chrII 786307 . A G 1944 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.42;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1977,222,0 chrII 786397 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.01;FS=4.624;HaplotypeScore=6.2542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.433;QD=24.21;ReadPosRankSum=1.702;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2866,321,0 chrII 786528 . G T 2734 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.57;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2767,303,0 chrII 786546 . T C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=126;Dels=0.00;FS=6.561;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.151;QD=21.11;ReadPosRankSum=2.410;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2693,312,0 chrII 786589 . T G 2550 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.56;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2583,291,0 chrII 786902 . G T 2608 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.86;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2641,297,0 chrII 787329 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.08;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3010,327,0 chrII 787344 . A T 2408 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.96;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2441,279,0 chrII 787463 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.43;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2994,327,0 chrII 787596 . C A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=23.19;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3386,375,0 chrII 787620 . A G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.594;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=0.361;QD=19.92;ReadPosRankSum=1.684;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2902,330,0 chrII 787633 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=142;Dels=0.00;FS=2.873;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=-0.736;QD=18.86;ReadPosRankSum=1.774;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2711,309,0 chrII 787638 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.49;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2732,300,0 chrII 787803 . A C 3063 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.02;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3096,348,0 chrII 787817 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.95;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3776,408,0 chrII 787938 . T C 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=148;Dels=0.03;FS=6.620;HaplotypeScore=7.9942;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.696;QD=20.23;ReadPosRankSum=2.381;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3027,339,0 chrII 787939 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=149;Dels=0.00;FS=3.129;HaplotypeScore=7.9942;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-1.451;QD=20.48;ReadPosRankSum=1.709;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3084,342,0 chrII 788189 . G A 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=150;Dels=0.00;FS=3.281;HaplotypeScore=4.4538;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-1.151;QD=18.56;ReadPosRankSum=1.523;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2817,309,0 chrII 788190 . T G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.412;HaplotypeScore=4.4538;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.035;QD=18.32;ReadPosRankSum=1.614;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2744,312,0 chrII 788369 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.39;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3212,360,0 chrII 788377 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=24.15;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3381,366,0 chrII 788444 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.178;QD=21.21;ReadPosRankSum=1.677;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2684,306,0 chrII 788501 . G C 2668 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7441;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.61;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2701,306,0 chrII 789113 . A T 1433 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.11;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1466,159,0 chrII 789139 . A G 1444 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.63;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1477,168,0 chrII 789182 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.54;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1207,132,0 chrII 789195 . A G 1069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=77;Dels=0.00;FS=4.094;HaplotypeScore=69.3212;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=-0.742;QD=13.88;ReadPosRankSum=1.687;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1102,126,0 chrII 789206 . T A 728 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.05;FS=0.000;HaplotypeScore=75.3405;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=8.67;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:761,99,0 chrII 789292 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.17;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3650,393,0 chrII 789369 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=25.00;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2708,294,0 chrII 789930 . G C 3061 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.50;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3094,360,0 chrII 790329 . A T 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.804;QD=22.70;ReadPosRankSum=1.687;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3473,393,0 chrII 790539 . T C 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.531;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.491;QD=22.39;ReadPosRankSum=1.702;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2630,294,0 chrII 790680 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.627;DP=127;Dels=0.00;FS=9.668;HaplotypeScore=12.0782;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.087;QD=19.09;ReadPosRankSum=2.945;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2457,285,0 chrII 790744 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.27;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3405,384,0 chrII 790755 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=174;Dels=0.00;FS=2.748;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.249;QD=20.67;ReadPosRankSum=2.421;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3597,408,0 chrII 790803 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.6912;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=17.85;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3391,375,0 chrII 790813 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.22;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3590,390,0 chrII 790890 . A G 4735.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.2162;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.33;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4735,534,0 chrII 791057 . C T 5824.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.93;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5824,660,0 chrII 791214 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.63;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4326,492,0 chrII 791232 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.23;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4134,453,0 chrII 791335 . T A 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=160;Dels=0.00;FS=3.590;HaplotypeScore=10.3713;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.043;QD=22.61;ReadPosRankSum=1.667;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3617,390,0 chrII 791380 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.99;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3472,393,0 chrII 791607 . A G 2662 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.17;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2695,309,0 chrII 791799 . T A 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.692;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.397;QD=23.11;ReadPosRankSum=1.669;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2552,279,0 chrII 791833 . C A 2540 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=94.1736;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.48;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2573,279,0 chrII 792152 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.369;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.127;QD=23.46;ReadPosRankSum=1.622;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1511,165,0 chrII 792199 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.57;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1683,183,0 chrII 792210 . C A 1391 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.08;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1424,156,0 chrII 792247 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.37;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1144,129,0 chrII 792465 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1271,141,0 chrII 792968 . A G 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=188;Dels=0.00;FS=4.411;HaplotypeScore=12.6464;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.384;QD=23.85;ReadPosRankSum=1.695;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:4484,504,0 chrII 793142 . T C 5818.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.00;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5818,663,0 chrII 793241 . A C 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.0242;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-1.423;QD=19.74;ReadPosRankSum=1.639;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4441,522,0 chrII 793247 . T A 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=209;Dels=0.00;FS=5.472;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.649;QD=19.81;ReadPosRankSum=1.715;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4140,459,0 chrII 793276 . G A 4882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.396;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.4972;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.446;QD=20.60;ReadPosRankSum=-1.674;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4882,540,0 chrII 793315 . T G 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=211;Dels=0.00;FS=5.160;HaplotypeScore=17.3147;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.181;QD=20.09;ReadPosRankSum=1.683;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4238,477,0 chrII 793476 . A C 3397.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=20.22;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3397,381,0 chrII 793478 . C T 3497.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=20.69;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3497,390,0 chrII 793484 . A C 3118 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=4.044;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;MQRankSum=-0.122;QD=18.23;ReadPosRankSum=1.712;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3151,360,0 chrII 793509 . A C 2545 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=16.63;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2578,303,0 chrII 793538 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=16.19;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2397,264,0 chrII 793624 . G C 4417.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.13;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4417,501,0 chrII 793772 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=24.39;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3586,399,0 chrII 793881 . C T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.52;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3535,396,0 chrII 794038 . A G 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=194;Dels=0.00;FS=6.511;HaplotypeScore=15.1277;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.736;QD=22.91;ReadPosRankSum=2.424;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4445,501,0 chrII 794075 . C T 4702.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.11;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4702,516,0 chrII 794106 . T A 4766.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.4289;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=24.44;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4766,513,0 chrII 794124 . T A 4443.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.90;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4443,483,0 chrII 794204 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=3.138;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.591;QD=23.10;ReadPosRankSum=1.712;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4020,456,0 chrII 794237 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=186;Dels=0.00;FS=6.480;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.538;QD=21.47;ReadPosRankSum=2.396;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3994,471,0 chrII 794296 . G C 3668.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0100;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.20;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3668,405,0 chrII 794317 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.299;QD=21.37;ReadPosRankSum=1.710;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3440,384,0 chrII 794394 . A G 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=205;Dels=0.00;FS=4.099;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.077;QD=23.30;ReadPosRankSum=1.681;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4776,546,0 chrII 794615 . C A 3080 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=17.30;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3113,345,0 chrII 794621 . C G 2920 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=16.88;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:2953,339,0 chrII 794626 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=17.35;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2844,315,0 chrII 794651 . T C 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=153;Dels=0.00;FS=4.110;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.661;QD=15.87;ReadPosRankSum=1.709;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2461,279,0 chrII 794794 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.79;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3305,366,0 chrII 794800 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=23.40;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3299,360,0 chrII 794828 . A G 2837 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=21.82;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2870,324,0 chrII 794921 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0454;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.53;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3943,432,0 chrII 794948 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.75;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3549,402,0 chrII 794976 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.6794;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.901;QD=20.47;ReadPosRankSum=1.671;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3542,399,0 chrII 795012 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.78;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3995,432,0 chrII 795035 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.76;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3695,435,0 chrII 795146 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=22.20;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3529,405,0 chrII 795161 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-1.108;QD=22.41;ReadPosRankSum=1.689;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3608,399,0 chrII 795170 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.1850;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=20.62;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3464,393,0 chrII 795224 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.5330;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.60;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:3980,468,0 chrII 795342 . G C 5637.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.27;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,261:265:99:5637,648,0 chrII 795354 . G C 5675.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.66;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,259:262:99:5675,630,0 chrII 795419 . T G 3971.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.6695;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=17.12;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:3971,453,0 chrII 795422 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.4582;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=17.71;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4338,468,0 chrII 795433 . T C 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=257;Dels=0.00;FS=9.018;HaplotypeScore=10.4053;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.010;QD=18.30;ReadPosRankSum=3.427;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:4,253:257:99:4702,537,0 chrII 795575 . T A 5155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=247;Dels=0.00;FS=14.314;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.858;QD=20.87;ReadPosRankSum=2.947;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:3,244:247:99:5155,570,0 chrII 795692 . C A 5698.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=24.5649;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.35;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5698,627,0 chrII 795756 . C G 4429.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5882;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.07;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4429,495,0 chrII 795869 . A G 4567.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.7811;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.75;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4567,525,0 chrII 796189 . G C 2472 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7016;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.13;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2505,276,0 chrII 796295 . T C 2755 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.77;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2788,315,0 chrII 796474 . T C 904 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.55;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:937,111,0 chrII 796489 . C T 876 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.46;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:909,102,0 chrII 796593 . A T 206.01 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.30;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:239,27,0 chrII 796619 . C T 294 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=23.8433;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.50;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:36:327,36,0 chrII 796622 . A G 274 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=69.5886;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.45;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:36:307,36,0 chrII 796710 . T G 1274 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.16;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1307,144,0 chrII 796726 . T A 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.176;QD=19.60;ReadPosRankSum=2.906;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1503,168,0 chrII 796789 . A G 2891 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.95;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2924,342,0 chrII 796981 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.62;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4321,474,0 chrII 797042 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.597;QD=20.24;ReadPosRankSum=1.824;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3583,393,0 chrII 797056 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=175;Dels=0.00;FS=9.413;HaplotypeScore=2.7062;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.220;QD=18.17;ReadPosRankSum=2.925;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3212,372,0 chrII 797164 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.19;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3705,414,0 chrII 797248 . G A 4556.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.2818;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.98;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4556,495,0 chrII 797326 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.8380;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.28;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3654,423,0 chrII 797413 . G C 4524.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.62;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4524,525,0 chrII 797569 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.87;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4003,441,0 chrII 797599 . C G 3367.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.01;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3367,381,0 chrII 797641 . A G 2677 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=17.85;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2710,315,0 chrII 797646 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.070;QD=18.74;ReadPosRankSum=1.685;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2806,309,0 chrII 797653 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.04;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2736,306,0 chrII 797758 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=150;Dels=0.00;FS=3.039;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.696;QD=23.58;ReadPosRankSum=2.351;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3537,399,0 chrII 797893 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.55;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3077,330,0 chrII 798747 . G T 2230 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.86;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2263,255,0 chrII 798782 . A G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=116;Dels=0.00;FS=2.974;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.038;QD=23.13;ReadPosRankSum=2.364;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2716,306,0 chrII 798886 . C A 2863 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.47;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2896,318,0 chrII 799021 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.45;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2063,228,0 chrII 799031 . G C 1728 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=16.78;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:1761,201,0 chrII 799048 . T C 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.524;QD=16.09;ReadPosRankSum=1.700;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1803,210,0 chrII 799111 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.57;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2243,246,0 chrII 799230 . T C 1957 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.60;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1990,228,0 chrII 799240 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.95;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2184,234,0 chrII 799431 . C T 2304 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.43;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2337,258,0 chrII 799435 . C G 2258 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=17.92;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2291,255,0 chrII 799503 . T C 2002 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=17.56;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2035,234,0 chrII 799511 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=17.08;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1843,210,0 chrII 799523 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=19.35;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1891,210,0 chrII 799552 . T C 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;MQRankSum=0.553;QD=16.52;ReadPosRankSum=1.695;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1586,180,0 chrII 799566 . A T 1501 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=15.16;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1534,168,0 chrII 799572 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=14.09;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1400,165,0 chrII 799713 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.5391;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.36;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2767,306,0 chrII 799718 . A G 2626 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=21.52;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2659,306,0 chrII 799796 . A G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=95;Dels=0.01;FS=5.356;HaplotypeScore=6.4362;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=0.602;QD=20.48;ReadPosRankSum=2.925;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1979,222,0 chrII 799806 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.39;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2065,228,0 chrII 800055 . G T 2197 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.13;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2230,246,0 chrII 800115 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.08;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1718,189,0 chrII 800195 . T C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3572;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.405;QD=22.26;ReadPosRankSum=1.658;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2148,243,0 chrII 800316 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.35;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1720,186,0 chrII 800655 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=145;Dels=0.00;FS=13.272;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.521;QD=21.88;ReadPosRankSum=2.841;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3206,360,0 chrII 800694 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=148;Dels=0.00;FS=5.246;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.526;QD=23.71;ReadPosRankSum=3.400;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3509,390,0 chrII 800746 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=5.7618;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.115;QD=20.38;ReadPosRankSum=1.708;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3009,345,0 chrII 800758 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.89;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2916,315,0 chrII 800859 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.50;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2756,297,0 chrII 800911 . A C 2576 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.28;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2609,294,0 chrII 800937 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.41;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2750,300,0 chrII 801020 . C T 4950.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.00;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4950,534,0 chrII 801218 . T C 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=4.411;HaplotypeScore=17.2693;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.657;QD=23.17;ReadPosRankSum=1.713;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4333,483,0 chrII 801524 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=171;Dels=0.00;FS=5.336;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;MQRankSum=2.252;QD=22.95;ReadPosRankSum=2.886;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,165:171:99:3925,441,0 chrII 801661 . A T 1756 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8093;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=0.487;QD=19.73;ReadPosRankSum=1.070;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1789,210,0 chrII 801662 . T A 1807 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8093;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;MQRankSum=-0.299;QD=20.77;ReadPosRankSum=1.095;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1840,207,0 chrII 801665 . A C 1776 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8093;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=19.73;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1809,204,0 chrII 801676 . G T 1706 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=18.54;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1739,195,0 chrII 801677 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=18.33;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1701,192,0 chrII 801689 . A G 1682 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=18.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1715,192,0 chrII 801690 . T G 1648 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=17.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1681,189,0 chrII 801693 . T C 1710 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=18.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1743,192,0 chrII 801699 . G A 1823 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=18.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1856,198,0 chrII 801704 . C T 1682 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=15.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1715,198,0 chrII 801707 . T C 1581 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=15.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1614,192,0 chrII 801710 . A T 1676 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=15.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1709,186,0 chrII 801713 . G A 1576 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=15.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1609,177,0 chrII 801716 . A G 1495 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=14.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1528,171,0 chrII 801722 . C T 1393 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=14.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1426,162,0 chrII 801728 . T C 906 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=12.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:939,105,0 chrII 801729 . A C 891 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=12.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:924,105,0 chrII 801731 . G A 930 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=13.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:963,105,0 chrII 801732 . T C 896 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=12.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:929,105,0 chrII 801738 . C A 933 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=13.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:966,105,0 chrII 801740 . C A 929 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=13.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:962,105,0 chrII 801797 . C T 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=2;QD=0.48;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,61:62:6:61,6,0 chrII 801806 . T C 29.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=1.19;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:61,6,0 chrII 801808 . G A 28.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=1.15;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:60,6,0 chrII 801810 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.87;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:53,6,0 chrII 801813 . C G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.83;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:52,6,0 chrII 801814 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.91;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:54,6,0 chrII 801815 . T C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.91;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:54,6,0 chrII 801818 . A T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.99;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:56,6,0 chrII 801819 . A T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.95;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:55,6,0 chrII 801822 . T A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.95;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:55,6,0 chrII 801825 . C G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.95;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:55,6,0 chrII 801827 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.95;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:55,6,0 chrII 801830 . G T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.95;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:55,6,0 chrII 801834 . T G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.79;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:51,6,0 chrII 801835 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.87;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:53,6,0 chrII 801836 . A G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=1.03;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:57,6,0 chrII 801838 . C G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.83;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:52,6,0 chrII 801848 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=2;QD=0.99;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:56,6,0 chrII 802651 . A G 71.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=11.92;SB=-2.355e+01 GT:AD:DP:GQ:PL 1/1:0,5:6:12:104,12,0 chrII 802656 . T C 128.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.054;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=0.573;QD=14.24;ReadPosRankSum=2.054;SB=-2.788e+01 GT:AD:DP:GQ:PL 1/1:3,6:9:18:161,18,0 chrII 802697 . C T 546 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=19.50;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:579,66,0 chrII 802713 . A T 855 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=21.92;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:888,99,0 chrII 802751 . G C 901 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=23.10;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:934,111,0 chrII 802760 . C T 754 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=24.32;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:90:787,90,0 chrII 802808 . C T 282 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=23.50;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:36:315,36,0 chrII 802829 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrII 802840 . A G 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.92;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:58,6,0 chrII 802841 . A G 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:59,6,0 chrII 802844 . G A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrII 802846 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrII 802847 . A T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:50,6,0 chrII 802850 . A G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=4.60;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:78,9,0 chrII 802857 . G A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=5.00;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:82,9,0 chrII 802861 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=3.69;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:80,9,0 chrII 802868 . C A 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=5.57;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:133,15,0 chrII 802870 . G A 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=5.68;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:135,15,0 chrII 802874 . A T 117.13 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=5.86;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:150,18,0 chrII 802895 . T C 167.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=7.26;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:200,24,0 chrII 802898 . T C 181.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=7.87;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:214,24,0 chrII 802901 . A G 175.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=7.29;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:24:208,24,0 chrII 802910 . A G 254 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=9.41;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:287,33,0 chrII 802919 . C T 322 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=11.10;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:39:355,39,0 chrII 802934 . G A 409 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=0;QD=13.19;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:51:442,51,0 chrII 802939 . T A 393 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=15.12;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:48:426,48,0 chrII 802940 . G T 378 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=14.54;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:48:411,48,0 chrII 802943 . C T 374 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=14.38;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:48:407,48,0 chrII 802949 . T A 329 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=12.8679;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=18.28;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:362,42,0 chrII 802951 . T C 323 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=12.8679;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=17.94;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:356,42,0 chrII 802953 . A G 326 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=12.8679;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=18.11;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:359,42,0 chrII 802954 . C T 354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=12.8679;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=19.67;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:387,42,0 chrII 802969 . C T 245 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=16.33;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:278,33,0 chrII 802973 . G A 258 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=17.20;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:291,33,0 chrII 802976 . A T 254 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=16.93;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:287,33,0 chrII 802979 . A G 250 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=16.67;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:283,33,0 chrII 802990 . A G 236 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-0.992;QD=16.86;ReadPosRankSum=1.488;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:30:269,30,0 chrII 802997 . T C 137.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=13.71;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:170,21,0 chrII 802999 . T A 155.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=15.51;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:188,21,0 chrII 803003 . G A 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=12.61;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:159,18,0 chrII 803315 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=2.23;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:49,6,0 chrII 803330 . A T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.40;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:83,9,0 chrII 803333 . A T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.20;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:80,9,0 chrII 803338 . A G 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.40;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:83,9,0 chrII 803340 . G T 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.53;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:85,9,0 chrII 803341 . A G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.26;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:81,9,0 chrII 803344 . C T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.19;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:83,9,0 chrII 803353 . A T 54.97 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.44;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:87,9,0 chrII 803355 . C G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.00;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:80,9,0 chrII 803356 . A T 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.37;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:86,9,0 chrII 803399 . G A 43.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=3.38;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:76,9,0 chrII 803462 . T A 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=15.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=-1.733;QD=1.16;ReadPosRankSum=1.641;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,37:38:9:76,9,0 chrII 803465 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.730;DP=38;Dels=0.00;FS=15.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=-1.733;QD=1.26;ReadPosRankSum=1.641;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,37:38:9:80,9,0 chrII 803468 . A T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DP=38;Dels=0.00;FS=15.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=-1.733;QD=1.24;ReadPosRankSum=1.641;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,37:38:9:79,9,0 chrII 803469 . G A 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=38;Dels=0.00;FS=15.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=-1.733;QD=1.24;ReadPosRankSum=1.641;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,37:38:9:79,9,0 chrII 803470 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641;DP=38;Dels=0.00;FS=15.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=-1.733;QD=1.21;ReadPosRankSum=1.641;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,37:38:9:78,9,0 chrII 803483 . G T 151.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=63;Dels=0.00;FS=17.993;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=-1.732;QD=2.40;ReadPosRankSum=0.027;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,62:63:21:184,21,0 chrII 803486 . T C 258 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=67;Dels=0.00;FS=12.240;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=-0.490;QD=3.85;ReadPosRankSum=2.421;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:4,63:67:33:291,33,0 chrII 803495 . C T 406 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=5.56;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:48:439,48,0 chrII 803498 . T C 484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=81;Dels=0.00;FS=11.303;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=-1.732;QD=5.98;ReadPosRankSum=-0.021;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:60:517,60,0 chrII 803507 . T C 668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=3.3001;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;MQRankSum=-1.629;QD=6.49;ReadPosRankSum=1.698;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:81:701,81,0 chrII 803528 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=11.63;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1289,144,0 chrII 803552 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=14.14;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1419,159,0 chrII 803617 . C T 255 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=9.81;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,25:26:30:288,30,0 chrII 803618 . C T 235 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=9.40;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:30:268,30,0 chrII 803621 . C A 242 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=9.68;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:30:275,30,0 chrII 803623 . A G 324 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.433;DP=32;Dels=0.00;FS=6.601;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=-0.433;QD=10.12;ReadPosRankSum=1.625;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:42:357,42,0 chrII 803628 . A G 212 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.628;DP=33;Dels=0.00;FS=3.724;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;MQRankSum=0.998;QD=6.42;ReadPosRankSum=0.893;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:30:245,30,0 chrII 803629 . G C 214 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.578;DP=34;Dels=0.00;FS=3.724;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;MQRankSum=0.788;QD=6.29;ReadPosRankSum=0.893;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:1,32:34:30:247,30,0 chrII 803630 . G A 214 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DP=34;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;MQRankSum=0.204;QD=6.29;ReadPosRankSum=0.815;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:30:247,30,0 chrII 803850 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=22.38;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2137,246,0 chrII 803852 . C T 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=1.511;QD=23.32;ReadPosRankSum=-0.553;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2225,230,0 chrII 803861 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=22.03;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2148,240,0 chrII 803897 . G A 1211 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.95;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1244,138,0 chrII 803900 . A G 1176 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;MQRankSum=-1.732;QD=15.89;ReadPosRankSum=1.685;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1209,138,0 chrII 803901 . A G 1151 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=15.77;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1184,138,0 chrII 803906 . A T 1183 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=74.4211;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=14.43;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1216,135,0 chrII 803909 . C A 1167 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=74.4211;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=14.59;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1200,135,0 chrII 803915 . A G 909 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=152.8624;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=-0.014;QD=10.57;ReadPosRankSum=2.393;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:98:942,98,0 chrII 803924 . C T 1112 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=12.22;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1145,129,0 chrII 803929 . T A 1087 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=12.21;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1120,123,0 chrII 803930 . G A 1067 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=11.99;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1100,120,0 chrII 803935 . G A 715 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=9.66;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:81:748,81,0 chrII 803936 . A C 668 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=9.03;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:84:701,84,0 chrII 803939 . G A 728 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=9.58;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:84:761,84,0 chrII 803942 . A G 718 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=8.97;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:84:751,84,0 chrII 803945 . G A 771 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=9.29;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:90:804,90,0 chrII 803948 . G A 756 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=8.79;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:87:789,87,0 chrII 803954 . G A 710 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=8.26;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:84:743,84,0 chrII 803964 . G A 592 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=7.40;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:69:625,69,0 chrII 803987 . G T 236 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8568;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.06;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:30:269,30,0 chrII 803993 . C T 270 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.3174;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.86;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:33:303,33,0 chrII 803999 . T A 236 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5815;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.47;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:30:269,30,0 chrII 804004 . T C 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5815;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.79;SB=-3.675e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:12:97,12,0 chrII 804005 . G A 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.71;SB=-3.775e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:12:94,12,0 chrII 804006 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.50;SB=-4.008e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:6:49,6,0 chrII 804007 . A T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.50;SB=-4.148e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:6:49,6,0 chrII 804023 . G A 78.51 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=0.93;SB=-3.915e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:12:111,12,0 chrII 804059 . A G 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;MQRankSum=1.040;QD=1.20;ReadPosRankSum=1.634;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:9:74,9,0 chrII 804060 . T C 43.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=1.29;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:9:76,9,0 chrII 804089 . A G 473 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=36.3015;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=9.46;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:60:506,60,0 chrII 804104 . A G 810 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=13.28;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:96:843,96,0 chrII 804112 . C A 1046 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=14.14;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1079,117,0 chrII 804167 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=119;Dels=0.00;FS=2.595;HaplotypeScore=7.3189;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;MQRankSum=0.393;QD=19.91;ReadPosRankSum=2.941;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2402,276,0 chrII 804209 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=15.85;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2109,240,0 chrII 804245 . G A 1218 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1251,144,0 chrII 804248 . G A 1234 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=10.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1267,141,0 chrII 804254 . C A 743 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:90:776,90,0 chrII 804255 . A G 720 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:90:753,90,0 chrII 804256 . T C 745 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.022;QD=9.43;ReadPosRankSum=-1.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,78:79:90:778,90,0 chrII 804259 . C T 778 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:90:811,90,0 chrII 804260 . T C 724 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.303;QD=9.05;ReadPosRankSum=1.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,79:80:87:757,87,0 chrII 804263 . A G 725 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.63;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:90:758,90,0 chrII 804266 . G T 898 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=8.98;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:931,105,0 chrII 804272 . G A 1173 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=10.66;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1206,132,0 chrII 804278 . G A 943 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=8.98;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:976,111,0 chrII 804303 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=14.60;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1551,180,0 chrII 804364 . C A 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-1.648;QD=20.31;ReadPosRankSum=1.186;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3371,381,0 chrII 804467 . T G 3449.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=21.97;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3449,384,0 chrII 804522 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5076;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=25.36;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3576,390,0 chrII 804556 . T C 3037 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5594;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.98;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3070,354,0 chrII 804560 . T C 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=3.030;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.785;QD=20.30;ReadPosRankSum=2.402;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3179,354,0 chrII 804646 . T C 2978 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.2159;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.39;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3011,342,0 chrII 804707 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.97;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3620,402,0 chrII 804775 . G C 3092 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.90;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3125,345,0 chrII 804912 . A C 2994 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=22.68;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3027,333,0 chrII 805021 . T A 1439 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=19;QD=15.15;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1472,165,0 chrII 805115 . C T 718 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=15.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:47:87:751,87,0 chrII 805208 . T G 207.01 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=23;QD=5.59;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:240,27,0 chrII 805334 . G A 186.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=19.54;MQ0=10;QD=8.86;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:219,24,0 chrII 805343 . A T 246 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=21.68;MQ0=10;QD=9.46;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:30:279,30,0 chrII 806015 . G A 820 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=34;QD=8.12;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:96:853,96,0 chrII 806034 . C T 978 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=18.65;MQ0=32;QD=8.89;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1011,114,0 chrII 806230 . G A 2820 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=22.97;MQ0=28;QD=18.55;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2853,315,0 chrII 806262 . A C 4481.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.3556;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=2;QD=20.46;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,212:219:99:4481,510,0 chrII 806401 . G C 526 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.64;MQ0=70;QD=4.46;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:63:559,63,0 chrII 806766 . T C 802 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.62;MQ0=59;QD=6.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:126:96:835,96,0 chrII 806795 . C G 776 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.29;MQ0=61;QD=6.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:118:93:809,93,0 chrII 806860 . G A 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.734;DP=116;Dels=0.00;FS=6.368;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=11.02;MQ0=77;MQRankSum=0.941;QD=1.61;ReadPosRankSum=0.745;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:59,56:116:99:217,0,135 chrII 807008 . G C 1238 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=23;QD=14.40;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1271,141,0 chrII 807151 . G C 1526 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=16;QD=13.39;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1559,177,0 chrII 807206 . A G 523 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=15.59;MQ0=29;QD=7.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:63:556,63,0 chrII 807505 . A G 965 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=21.46;MQ0=43;MQRankSum=-2.381;QD=8.39;ReadPosRankSum=2.381;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:2,113:115:99:998,111,0 chrII 807590 . G A 768 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=8;QD=11.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:90:801,90,0 chrII 808127 . C A 487 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=15;QD=12.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:57:520,57,0 chrII 808195 . T C 71.51 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.74;MQ0=6;QD=7.15;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:104,12,0 chrII 808261 . G A 210.01 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=7;QD=10.50;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:243,27,0 chrII 808280 . C T 420 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=5;QD=15.56;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:54:453,54,0 chrII 808315 . T C 481 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=7;MQRankSum=-1.467;QD=14.58;ReadPosRankSum=1.600;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:39:514,39,0 chrII 808382 . G A 122.13 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.35;MQ0=13;QD=6.11;SB=-4.788e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:155,18,0 chrII 808401 . C T 73.51 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.15;MQ0=10;QD=5.25;SB=-4.875e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:106,12,0 chrII 808409 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.60;MQ0=11;MQRankSum=-0.727;QD=1.45;ReadPosRankSum=0.727;SB=-2.476e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:6:53,6,0 chrII 808441 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.25;MQ0=10;QD=3.15;SB=-2.221e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:9:73,9,0 chrII 808510 . G A 412 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=25;QD=9.81;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:48:445,48,0 chrII 808515 . T A 404 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.98;MQ0=24;QD=9.62;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:48:437,48,0 chrII 808722 . A G 1106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;DP=155;Dels=0.00;FS=2.496;HaplotypeScore=17.3510;MLEAC=1;MLEAF=0.500;MQ=31.06;MQ0=17;MQRankSum=0.466;QD=7.14;ReadPosRankSum=1.223;SB=-2.860e+02 GT:AD:DP:GQ:PL 0/1:76,74:155:99:1136,0,1169 chrII 808853 . G T 472 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.38;MQ0=36;QD=8.58;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:57:505,57,0 chrII 808874 . A C 355 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=38;Dels=0.00;FS=12.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=22;MQRankSum=1.519;QD=9.34;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,35:38:45:388,45,0 chrII 808935 . G A 2669 filter AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=57;QD=15.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2702,288,0 chrII 810050 . C G 51.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=8;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.96;MQ0=3;MQRankSum=-0.731;QD=6.39;ReadPosRankSum=0.731;SB=-2.636e+00 GT:AD:DP:GQ:PL 0/1:1,7:8:12:81,0,12 chrII 810077 . T C 72.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=2;QD=12.09;SB=-2.555e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:105,12,0 chrII 810221 . C G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=6.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:50,6,0 chrII 810249 . A G 62.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.254;DP=14;Dels=0.00;FS=7.160;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.22;MQ0=1;MQRankSum=2.451;QD=4.47;ReadPosRankSum=1.775;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:4,10:14:12:95,12,0 chrII 810283 . G A 114.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.505;DP=16;Dels=0.00;FS=6.410;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.69;MQ0=1;MQRankSum=2.526;QD=7.13;ReadPosRankSum=-1.516;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:4,12:16:18:147,18,0 chrII 810340 . C T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.98;MQ0=12;QD=1.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:11,3:14:6:45,6,0 chrII 810344 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.68;MQ0=13;QD=1.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,2:15:6:47,6,0 chrIII 233 . C A 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.356;DP=151;Dels=0.01;FS=5.264;HaplotypeScore=79.9781;MLEAC=1;MLEAF=0.500;MQ=24.76;MQ0=20;MQRankSum=1.102;QD=1.81;ReadPosRankSum=1.872;SB=-3.010e+02 GT:AD:DP:GQ:PL 0/1:92,57:149:99:304,0,142 chrIII 278 . C A 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;DP=131;Dels=0.00;FS=6.484;HaplotypeScore=71.2441;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=29;MQRankSum=-0.998;QD=0.48;ReadPosRankSum=0.904;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:108,23:131:93:93,0,203 chrIII 544 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=2;QD=1.49;SB=-7.080e+01 GT:AD:DP:GQ:PL 1/1:0,11:12:6:49,6,0 chrIII 632 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=5.45;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrIII 633 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=4.46;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrIII 636 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=3.97;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrIII 658 . T C 38.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=0;QD=5.57;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:71,9,0 chrIII 666 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=9.5638;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=0;QD=6.42;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:77,9,0 chrIII 706 . T C 23.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=21.00;MQ0=0;MQRankSum=-2.982;QD=0.96;ReadPosRankSum=0.194;SB=-2.509e+01 GT:AD:DP:GQ:PL 0/1:4,20:24:14:53,0,14 chrIII 717 . T A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.9113;MLEAC=2;MLEAF=1.00;MQ=19.87;MQ0=0;QD=1.37;SB=-2.898e+01 GT:AD:DP:GQ:PL 1/1:0,22:24:9:65,9,0 chrIII 725 . G T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;DP=18;Dels=0.00;FS=7.782;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=20.03;MQ0=0;MQRankSum=-2.606;QD=1.83;ReadPosRankSum=1.303;SB=2.67 GT:AD:DP:GQ:PL 1/1:3,15:18:9:65,9,0 chrIII 726 . T A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=18;Dels=0.00;FS=12.553;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=20.03;MQ0=0;MQRankSum=-1.156;QD=1.83;ReadPosRankSum=-0.578;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:9:65,9,0 chrIII 728 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.948;DP=18;Dels=0.00;FS=7.782;HaplotypeScore=2.9246;MLEAC=2;MLEAF=1.00;MQ=20.03;MQ0=0;MQRankSum=-2.606;QD=1.83;ReadPosRankSum=1.777;SB=2.67 GT:AD:DP:GQ:PL 1/1:3,15:18:9:65,9,0 chrIII 834 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.86;MQ0=6;MQRankSum=-0.925;QD=0.63;ReadPosRankSum=-0.555;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:6,12:18:35:41,0,35 chrIII 879 . G C 74.51 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=6;QD=3.24;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:107,12,0 chrIII 892 . C G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.31;MQ0=6;MQRankSum=0.106;QD=0.53;ReadPosRankSum=-2.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,3:27:44:44,0,88 chrIII 929 . A G 227 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=4;MQRankSum=-1.637;QD=8.41;ReadPosRankSum=3.708;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:7,20:27:36:260,36,0 chrIII 931 . A C 227 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.21;MQ0=4;QD=11.35;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:1,19:20:36:260,36,0 chrIII 951 . C A 227 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.60;MQ0=3;QD=11.95;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:1,16:19:36:260,36,0 chrIII 959 . C T 227 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.84;MQ0=5;QD=10.81;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:5,16:21:36:260,36,0 chrIII 1218 . C T 429.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.649;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=0;MQRankSum=-5.516;QD=8.94;ReadPosRankSum=-4.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,33:48:99:459,0,247 chrIII 1250 . G A 389.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.959;DP=49;Dels=0.00;FS=4.597;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.22;MQ0=0;MQRankSum=-5.598;QD=7.94;ReadPosRankSum=4.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,32:49:99:419,0,290 chrIII 1261 . G A 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.919;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.6596;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=0;MQRankSum=4.939;QD=5.80;ReadPosRankSum=-4.399;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,16:50:99:320,0,420 chrIII 1264 . G A 939 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.6989;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=0;QD=18.78;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:972,123,0 chrIII 1271 . T C 335.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.967;DP=38;Dels=0.00;FS=5.798;HaplotypeScore=2.6989;MLEAC=1;MLEAF=0.500;MQ=20.22;MQ0=0;MQRankSum=-3.729;QD=8.82;ReadPosRankSum=3.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,28:38:99:365,0,145 chrIII 1273 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;DP=35;Dels=0.00;FS=7.659;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=19.29;MQ0=0;MQRankSum=2.429;QD=0.41;ReadPosRankSum=-2.210;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:29,6:35:44:44,0,287 chrIII 1358 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;QD=2.41;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIII 1367 . G A 104.13 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=0;QD=8.68;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:137,18,0 chrIII 1369 . A T 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=0;MQRankSum=3.016;QD=1.85;ReadPosRankSum=0.935;SB=-6.563e-03 GT:AD:DP:GQ:PL 0/1:7,6:13:47:54,0,47 chrIII 1370 . G C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=0;MQRankSum=-3.204;QD=1.14;ReadPosRankSum=-0.545;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:7,7:15:47:47,0,57 chrIII 1380 . A T 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;DP=26;Dels=0.00;FS=3.736;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=22.38;MQ0=0;MQRankSum=-4.308;QD=3.88;ReadPosRankSum=-1.142;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,15:26:99:131,0,114 chrIII 1397 . C A 499 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=0;QD=12.17;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:69:532,69,0 chrIII 1423 . G A 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.721;DP=48;Dels=0.00;FS=4.508;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=0;MQRankSum=-5.583;QD=6.15;ReadPosRankSum=4.980;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,31:48:99:325,0,159 chrIII 4090 . T C 164.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;DP=40;Dels=0.00;FS=7.570;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;MQRankSum=-1.424;QD=4.10;ReadPosRankSum=2.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,33:40:24:197,24,0 chrIII 4178 . G T 1861 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=17.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1894,225,0 chrIII 4184 . A C 1953 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=22.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1986,237,0 chrIII 4202 . T C 675 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=22.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:87:708,87,0 chrIII 4206 . C G 436 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=22.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:57:469,57,0 chrIII 4212 . G A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.91;MQ0=0;QD=9.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:71,9,0 chrIII 4262 . A T 149.06 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=8.28;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:182,21,0 chrIII 4281 . T C 681 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=0;QD=14.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:84:714,84,0 chrIII 4297 . T C 1520 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=16.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1553,177,0 chrIII 4312 . C T 1750 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;QD=16.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1783,204,0 chrIII 4859 . G C 404 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=16.32;MQ0=5;QD=3.54;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,112:114:51:437,51,0 chrIII 4925 . T C 333 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=4;QD=2.85;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:45:366,45,0 chrIII 4951 . T C 188.01 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=16.42;MQ0=4;QD=2.76;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:27:221,27,0 chrIII 4955 . T A 206.01 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=4;QD=3.43;SB=-1.279e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:27:239,27,0 chrIII 4986 . G A 90.26 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.85;MQ0=4;QD=2.51;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:15:123,15,0 chrIII 4991 . A G 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=2;QD=1.74;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,35:36:12:95,12,0 chrIII 4999 . T C 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=2.59;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:18:147,18,0 chrIII 5000 . T G 109.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.13;MQ0=0;MQRankSum=-1.266;QD=2.37;ReadPosRankSum=2.343;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,44:46:18:142,18,0 chrIII 5012 . G T 257 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.71;MQ0=0;QD=2.92;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,88:88:33:290,33,0 chrIII 5018 . T C 285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;MQRankSum=0.126;QD=2.59;ReadPosRankSum=1.701;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,109:110:39:318,39,0 chrIII 5037 . A G 405 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.06;MQ0=0;QD=2.55;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,159:159:51:438,51,0 chrIII 5049 . G T 407 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.26;MQ0=0;QD=2.11;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,193:193:51:440,51,0 chrIII 5087 . C T 325 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.28;MQ0=0;QD=1.44;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,226:226:42:358,42,0 chrIII 5104 . C T 137.06 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.3694;MLEAC=2;MLEAF=1.00;MQ=16.03;MQ0=0;QD=0.79;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,173:173:21:170,21,0 chrIII 5106 . C T 113.13 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5808;MLEAC=2;MLEAF=1.00;MQ=16.03;MQ0=0;QD=0.65;SB=-7.507e+01 GT:AD:DP:GQ:PL 1/1:0,173:173:18:146,18,0 chrIII 5116 . A G 85.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=94.9461;MLEAC=2;MLEAF=1.00;MQ=15.63;MQ0=0;MQRankSum=-1.119;QD=0.58;ReadPosRankSum=1.709;SB=-6.976e+01 GT:AD:DP:GQ:PL 1/1:1,146:147:15:118,15,0 chrIII 5117 . A T 85.26 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=94.9532;MLEAC=2;MLEAF=1.00;MQ=15.64;MQ0=0;QD=0.58;SB=-7.476e+01 GT:AD:DP:GQ:PL 1/1:0,146:146:15:118,15,0 chrIII 5127 . G C 59.51 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.76;MQ0=13;QD=0.53;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:0,111:113:12:92,12,0 chrIII 5140 . T G 62.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=105;Dels=0.00;FS=4.033;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.47;MQ0=24;MQRankSum=-1.647;QD=0.60;ReadPosRankSum=1.689;SB=-4.501e+01 GT:AD:DP:GQ:PL 1/1:1,104:105:12:95,12,0 chrIII 5266 . C T 1123 filter AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=19.29;MQ0=8;QD=4.55;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,244:247:99:1156,135,0 chrIII 5347 . A G 174.03 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=10.98;MQ0=49;QD=2.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,77:78:24:207,24,0 chrIII 5397 . T C 65.51 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.26;MQ0=15;QD=1.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:12:98,12,0 chrIII 5439 . T C 120.13 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=6;QD=1.24;SB=-2.514e+01 GT:AD:DP:GQ:PL 1/1:2,95:97:18:153,18,0 chrIII 5464 . G T 124.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.19;MQ0=15;QD=1.33;SB=-3.101e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:18:157,18,0 chrIII 5471 . G A 123.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=20;QD=1.35;SB=-3.091e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:18:156,18,0 chrIII 5474 . C T 120.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.54;MQ0=24;QD=1.26;SB=-3.041e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:18:153,18,0 chrIII 5482 . C T 121.13 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=27;QD=1.33;SB=-2.531e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:18:154,18,0 chrIII 5488 . T A 190.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=94;Dels=0.00;FS=3.282;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=20.34;MQ0=27;MQRankSum=-1.732;QD=2.02;ReadPosRankSum=1.680;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:27:223,27,0 chrIII 5520 . A C 1616 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=135;Dels=0.00;FS=17.669;HaplotypeScore=11.2454;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=38;MQRankSum=2.142;QD=11.97;ReadPosRankSum=2.398;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:3,132:135:99:1649,186,0 chrIII 5678 . T C 1783 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=113;Dels=0.00;FS=10.776;HaplotypeScore=3.0340;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=19;MQRankSum=-0.008;QD=15.78;ReadPosRankSum=3.132;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:6,107:113:99:1816,207,0 chrIII 5684 . G A 2348 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8227;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=20;QD=19.09;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2381,270,0 chrIII 5904 . C T 4349.01 filter AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=14;QD=20.81;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4349,492,0 chrIII 5925 . C T 4248.01 filter AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=12;QD=19.94;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4248,492,0 chrIII 5975 . A G 1690 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=7;MQRankSum=1.547;QD=14.08;ReadPosRankSum=1.639;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:1723,207,0 chrIII 5985 . A G 995 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=85;Dels=0.00;FS=2.783;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=5;MQRankSum=-0.111;QD=11.71;ReadPosRankSum=2.387;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:2,81:85:99:1028,123,0 chrIII 6009 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.0264;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=2;QD=15.64;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1472,168,0 chrIII 6050 . G C 3423.01 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=7;QD=21.26;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3423,396,0 chrIII 6085 . C T 3724.01 filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=168.6690;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=10;QD=18.34;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3724,429,0 chrIII 6157 . T C 503 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.05;FS=0.000;HaplotypeScore=26.7927;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=12;QD=11.43;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:63:536,63,0 chrIII 6190 . C T 622 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=3;QD=13.82;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:655,78,0 chrIII 6226 . G C,T 1164.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=41.20;MQ0=3;QD=14.02;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/2:0,27,56:83:99:1224,808,754,416,0,311 chrIII 6234 . C T 494.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.172;DP=99;Dels=0.00;FS=20.609;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=41.91;MQ0=3;MQRankSum=3.640;QD=4.99;ReadPosRankSum=-7.891;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,43:99:99:524,0,671 chrIII 6243 . G T 821.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.139;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=15.0574;MLEAC=1;MLEAF=0.500;MQ=40.98;MQ0=3;MQRankSum=2.202;QD=6.62;ReadPosRankSum=-5.385;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:55,69:124:99:851,0,621 chrIII 6327 . C A 862 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=19;QD=12.14;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:895,108,0 chrIII 6337 . G A 473 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=20;QD=9.46;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:57:506,57,0 chrIII 6346 . C T 436 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=17;QD=10.63;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:54:469,54,0 chrIII 6389 . G A 512 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.08;MQ0=9;QD=8.68;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:63:545,63,0 chrIII 6401 . G A 574 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.05;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=12;QD=7.17;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:69:607,69,0 chrIII 6419 . T A 680 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.932;DP=116;Dels=0.00;FS=17.075;HaplotypeScore=4.5272;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=13;MQRankSum=-0.598;QD=5.86;ReadPosRankSum=1.167;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:4,112:116:87:713,87,0 chrIII 6445 . A T 693 filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=134.2341;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=10;QD=4.17;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:84:726,84,0 chrIII 6475 . G A 452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.190;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.5534;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=2;MQRankSum=-0.794;QD=2.54;ReadPosRankSum=-1.962;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:5,173:178:57:485,57,0 chrIII 6489 . A G 595 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=0;QD=3.36;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,177:177:75:628,75,0 chrIII 6493 . T C 501 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.3631;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=1;QD=2.78;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,180:180:63:534,63,0 chrIII 6499 . T C 347 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0245;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=1;MQRankSum=0.536;QD=2.04;ReadPosRankSum=1.711;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,168:170:45:380,45,0 chrIII 6513 . C T 594 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6689;MLEAC=2;MLEAF=1.00;MQ=21.01;MQ0=7;QD=3.16;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,188:188:72:627,72,0 chrIII 6542 . A G 1228 filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=22.24;MQ0=10;QD=6.36;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,191:193:99:1261,147,0 chrIII 6726 . G A 6505.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=14.5793;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=17.30;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,376:376:99:6505,741,0 chrIII 6747 . C T 5254.01 filter AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=10;QD=17.00;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:5254,600,0 chrIII 6821 . A G 3201 filter AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.3931;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=43;QD=13.23;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,242:242:99:3234,375,0 chrIII 6881 . T C 5069.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=321;Dels=0.00;FS=10.939;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=15;MQRankSum=1.362;QD=15.79;ReadPosRankSum=2.957;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:3,314:321:99:5069,611,0 chrIII 6893 . C T 6300.01 filter AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=24.0332;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=9;QD=18.31;SB=-3.419e+03 GT:AD:DP:GQ:PL 1/1:0,340:344:99:6300,717,0 chrIII 6977 . A G 1239 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=148;Dels=0.00;FS=2.457;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=60;MQRankSum=-2.708;QD=8.37;ReadPosRankSum=3.352;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:4,141:148:99:1272,156,0 chrIII 7083 . C T 2580 filter AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=18.73;MQ0=50;QD=9.18;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,278:281:99:2613,300,0 chrIII 7103 . T C 2072 filter AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.0607;MLEAC=2;MLEAF=1.00;MQ=19.46;MQ0=59;QD=8.60;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:2,237:241:99:2105,243,0 chrIII 7396 . T G 44.97 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.73;MQ0=37;QD=1.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:9:77,9,0 chrIII 7476 . A G 63.51 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=14.69;MQ0=18;QD=1.98;SB=-4.955e+01 GT:AD:DP:GQ:PL 1/1:0,30:32:12:96,12,0 chrIII 7787 . C T 3772.01 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=8;QD=21.80;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3772,432,0 chrIII 7952 . T C 2708 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.6880;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=29;QD=14.80;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:2741,321,0 chrIII 8006 . T C 1513 filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=22.14;MQ0=55;QD=9.34;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:1546,183,0 chrIII 8353 . C T 153.06 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=19.2045;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=22;QD=2.28;SB=-5.461e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:21:186,21,0 chrIII 8368 . C T 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DP=74;Dels=0.00;FS=61.772;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=19;MQRankSum=1.146;QD=0.26;ReadPosRankSum=-4.113;SB=-4.348e-03 GT:AD:DP:GQ:PL 0/1:61,12:74:49:49,0,479 chrIII 8528 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=3;QD=18.27;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2098,249,0 chrIII 8542 . T C 1815 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=4;QD=18.52;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1848,213,0 chrIII 8572 . T C 1075 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=124.1332;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=11;QD=11.94;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1108,129,0 chrIII 8584 . A T 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451;DP=106;Dels=0.00;FS=2.798;HaplotypeScore=137.5067;MLEAC=1;MLEAF=0.500;MQ=30.24;MQ0=16;MQRankSum=1.450;QD=1.54;ReadPosRankSum=-5.042;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:82,24:106:77:193,0,77 chrIII 8587 . A T 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=107;Dels=0.00;FS=8.371;HaplotypeScore=97.7063;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=16;MQRankSum=-1.716;QD=1.16;ReadPosRankSum=4.689;SB=-2.420e+02 GT:AD:DP:GQ:PL 0/1:17,90:107:84:154,0,84 chrIII 8685 . C T 3273.01 filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=9;QD=16.61;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3273,381,0 chrIII 8696 . G A 2594 filter AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.9434;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=11;QD=14.10;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:2627,306,0 chrIII 8743 . C T 3411.01 filter AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=13;QD=17.23;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3411,399,0 chrIII 8774 . T C 4139.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=228;Dels=0.00;FS=2.594;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=15;MQRankSum=0.064;QD=18.15;ReadPosRankSum=2.426;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,222:228:99:4139,497,0 chrIII 8940 . T C 4927.01 filter AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=3.5809;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=11;QD=20.53;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:4927,567,0 chrIII 8947 . T G 4865.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=241;Dels=0.00;FS=3.417;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=6;MQRankSum=1.201;QD=20.19;ReadPosRankSum=1.703;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:4865,573,0 chrIII 8969 . T C 5092.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=247;Dels=0.00;FS=4.375;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=6;MQRankSum=-0.007;QD=20.62;ReadPosRankSum=1.703;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5092,582,0 chrIII 9075 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=181;Dels=0.00;FS=4.284;HaplotypeScore=10.7076;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=0.343;QD=19.59;ReadPosRankSum=1.673;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:3545,420,0 chrIII 9215 . T C 261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=88;Dels=0.00;FS=18.552;HaplotypeScore=58.1010;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=2;MQRankSum=-0.795;QD=2.97;ReadPosRankSum=2.917;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:3,84:88:36:294,36,0 chrIII 9219 . T C 342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=94;Dels=0.01;FS=2.519;HaplotypeScore=10.1166;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=1;MQRankSum=1.957;QD=3.64;ReadPosRankSum=2.770;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:4,89:93:45:375,45,0 chrIII 9261 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=3;QD=17.46;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2111,249,0 chrIII 9265 . G A 2133 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=4;QD=17.92;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2166,255,0 chrIII 9392 . C T 3352.01 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=5;QD=22.35;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3352,381,0 chrIII 9461 . G T 980 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=19;QD=12.73;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1013,123,0 chrIII 9627 . C T 1039 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=18.16;MQ0=65;QD=6.79;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:1072,129,0 chrIII 9739 . A G 4418.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=220;Dels=0.00;FS=11.133;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=31;MQRankSum=-2.835;QD=20.08;ReadPosRankSum=2.963;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:4418,510,0 chrIII 9807 . A G 970 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=15.59;MQ0=76;MQRankSum=-1.254;QD=7.24;ReadPosRankSum=1.673;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,130:134:99:1003,123,0 chrIII 9966 . A C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.41;MQ0=72;MQRankSum=-1.380;QD=0.24;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,73:78:6:50,6,0 chrIII 9975 . C A 44.97 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.94;MQ0=77;QD=0.54;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,84:84:9:77,9,0 chrIII 10164 . T C 1115 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=5;QD=18.58;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1148,141,0 chrIII 10583 . T C 206.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=1;MLEAF=0.500;MQ=13.29;MQ0=63;MQRankSum=-2.349;QD=1.49;ReadPosRankSum=3.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,69:138:99:236,0,234 chrIII 10608 . C T 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=14.82;MQ0=69;MQRankSum=-2.589;QD=1.85;ReadPosRankSum=-0.170;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,100:192:99:386,0,628 chrIII 11275 . C T 197.01 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=7.58;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:230,27,0 chrIII 11290 . C T 255 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.50;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:288,33,0 chrIII 11297 . T A 260 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=9.29;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:293,33,0 chrIII 11299 . A T 258 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=8.90;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:33:291,33,0 chrIII 11312 . A T 280 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=10.77;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:36:313,36,0 chrIII 11341 . A G 479 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=13.69;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:60:512,60,0 chrIII 11382 . C A 468 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;QD=16.71;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:501,57,0 chrIII 11416 . A G 597 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;QD=20.59;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:630,75,0 chrIII 11417 . T C 577 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;QD=19.90;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:610,75,0 chrIII 11423 . C T 453 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;QD=17.42;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:60:486,60,0 chrIII 11436 . C T 569 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=18.97;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:602,75,0 chrIII 11775 . G T 100.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=1;QD=9.11;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,10:11:15:133,15,0 chrIII 11782 . T A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.07;MQ0=13;QD=1.17;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:6:51,6,0 chrIII 13881 . C A 186.03 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.58;MQ0=69;QD=2.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:24:219,24,0 chrIII 13921 . C T 56.97 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.71;MQ0=75;QD=0.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:9:89,9,0 chrIII 13965 . G C 580 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.65;MQ0=47;QD=7.84;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:72:613,72,0 chrIII 14001 . C T 711 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=7;QD=15.80;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:3,41:45:90:744,90,0 chrIII 14003 . C T 703 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=5;QD=16.35;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:3,40:43:90:736,90,0 chrIII 14006 . G A 725 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=4;QD=16.48;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:90:758,90,0 chrIII 14054 . G A 500 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=12.50;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:533,63,0 chrIII 14059 . T C 421 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=0;QD=10.52;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:454,51,0 chrIII 14069 . G T 416 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=11.24;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:51:449,51,0 chrIII 14098 . C T 525 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=11.41;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:63:558,63,0 chrIII 14112 . A T 408 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=33.5709;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=9.71;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:51:441,51,0 chrIII 14139 . G T 277 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=8.66;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:36:310,36,0 chrIII 14147 . A C 247 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=7.97;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:280,33,0 chrIII 14185 . C T 255 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=6.54;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:33:288,33,0 chrIII 14191 . G A 384 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=8.73;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:48:417,48,0 chrIII 14196 . T A 331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=3.823;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;MQRankSum=-0.718;QD=8.07;ReadPosRankSum=0.972;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:42:364,42,0 chrIII 14222 . C T 436 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=11.47;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:57:469,57,0 chrIII 14289 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=10.6850;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=21.75;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1251,147,0 chrIII 14340 . A C 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;MQRankSum=0.630;QD=20.57;ReadPosRankSum=1.575;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:938,111,0 chrIII 14356 . A T 444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=6.601;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=0.866;QD=13.87;ReadPosRankSum=1.300;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:60:477,60,0 chrIII 14384 . G A 479 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;QD=21.77;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:60:512,60,0 chrIII 14399 . G A 470 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;QD=21.36;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:503,60,0 chrIII 14505 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=1.59;SB=-2.371e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:47,6,0 chrIII 14539 . C A 362 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=13.92;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:45:395,45,0 chrIII 14584 . C T 444 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=21.0306;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=14.32;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:57:477,57,0 chrIII 14589 . T C 470 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=15.16;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:60:503,60,0 chrIII 14619 . T C 188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;MQRankSum=-2.336;QD=8.95;ReadPosRankSum=2.216;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:2,19:21:27:221,27,0 chrIII 14620 . T C 190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;MQRankSum=-1.734;QD=8.64;ReadPosRankSum=1.576;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:27:223,27,0 chrIII 14631 . T A 303 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.17;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:39:336,39,0 chrIII 14693 . G T 681 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.64;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:81:714,81,0 chrIII 14793 . A G 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;MQRankSum=0.613;QD=20.47;ReadPosRankSum=1.572;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1384,165,0 chrIII 14817 . C T 1077 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=19.94;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1110,132,0 chrIII 14924 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.16;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1470,177,0 chrIII 14934 . T A 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=1.689;QD=19.67;ReadPosRankSum=1.647;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1626,186,0 chrIII 14968 . C A 1254 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=14.75;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1287,156,0 chrIII 14993 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=13.00;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1034,117,0 chrIII 15001 . C T 1105 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=14.35;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1138,129,0 chrIII 15004 . G A 1023 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;QD=14.01;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1056,123,0 chrIII 15006 . G A 966 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=13.05;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:999,117,0 chrIII 15033 . A C 898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.757;HaplotypeScore=67.8739;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;MQRankSum=0.593;QD=11.82;ReadPosRankSum=1.687;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:931,108,0 chrIII 15093 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.81;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1677,195,0 chrIII 15172 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=23.16;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2187,249,0 chrIII 15182 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=20.72;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2064,240,0 chrIII 15259 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=20.35;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2027,246,0 chrIII 15335 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=20.19;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2052,234,0 chrIII 15380 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=0;QD=17.29;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1762,207,0 chrIII 15382 . A C 1666 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=0;QD=16.66;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1699,201,0 chrIII 15394 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=16.17;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1618,183,0 chrIII 15398 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=14.14;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1447,174,0 chrIII 15421 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=13.63;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1273,147,0 chrIII 15430 . T G 1421 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=86.0192;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=14.50;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1454,171,0 chrIII 15478 . T G 1705 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=15.22;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1738,204,0 chrIII 15488 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=15.26;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1834,213,0 chrIII 15510 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=16.44;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2154,249,0 chrIII 15528 . C A 2332 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=18.36;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2365,270,0 chrIII 15689 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=19.33;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1947,222,0 chrIII 15816 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1505,177,0 chrIII 15960 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.04;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2184,252,0 chrIII 16356 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.00;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3300,393,0 chrIII 16578 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7916;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.66;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3388,407,0 chrIII 16708 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.65;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2782,315,0 chrIII 16833 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.66;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2595,300,0 chrIII 17097 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2673,300,0 chrIII 17130 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.98;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2519,297,0 chrIII 17635 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4230,480,0 chrIII 17839 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3717,441,0 chrIII 17917 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.199;QD=22.00;ReadPosRankSum=1.690;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3696,440,0 chrIII 18016 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.19;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4060,456,0 chrIII 18138 . G C 4037.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.25;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4037,471,0 chrIII 18173 . G A 4560.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.82;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4560,525,0 chrIII 18276 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.740;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.0578;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-0.397;QD=17.62;ReadPosRankSum=3.518;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:5,206:213:99:3752,438,0 chrIII 18277 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.4804;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.17;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3851,444,0 chrIII 18342 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.1207;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=16.77;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3035,365,0 chrIII 18513 . C T 1026 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=17.8325;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1059,120,0 chrIII 18583 . C T 1006 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=17.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1039,120,0 chrIII 18599 . C T 846 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:879,99,0 chrIII 18676 . C T 97.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=8.11;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:130,15,0 chrIII 18742 . C T 782 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:96:815,96,0 chrIII 18755 . G A 735 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:96:768,96,0 chrIII 18757 . G C 825 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:99:858,102,0 chrIII 18815 . A G 277 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=12.59;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:310,39,0 chrIII 18828 . G A 442 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=13.39;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:54:475,54,0 chrIII 18860 . A T 1000 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.87;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1033,117,0 chrIII 19113 . T C 3008 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.03;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3041,348,0 chrIII 19148 . C T 2274 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.44;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2307,264,0 chrIII 19446 . A T 1644 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.68;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1677,201,0 chrIII 19459 . T A 1894 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.33;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1927,225,0 chrIII 19506 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.44;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1969,228,0 chrIII 19605 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.99;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2237,261,0 chrIII 19830 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=4.500;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.637;QD=22.53;ReadPosRankSum=1.665;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3515,408,0 chrIII 19865 . G C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.88;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3362,407,0 chrIII 20428 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.71;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2713,309,0 chrIII 20599 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.08;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2683,306,0 chrIII 20844 . G T 2466 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.9178;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.21;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2499,285,0 chrIII 20868 . T A 2987 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.32;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3020,342,0 chrIII 20894 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.99;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3031,345,0 chrIII 20985 . A G 1754 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1787,219,0 chrIII 21165 . T C 2397 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.03;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2430,282,0 chrIII 21204 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.446;QD=22.53;ReadPosRankSum=1.706;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3007,345,0 chrIII 21491 . T C 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.652;QD=21.90;ReadPosRankSum=1.716;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4753,552,0 chrIII 21591 . C G 3280.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.63;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3280,384,0 chrIII 21650 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.284;QD=20.33;ReadPosRankSum=1.712;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3456,405,0 chrIII 21751 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:3683,417,0 chrIII 21827 . A C 3953.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6008;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.25;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3953,473,0 chrIII 21985 . T C 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=3.010;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.549;QD=21.78;ReadPosRankSum=2.424;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4139,480,0 chrIII 22182 . C T 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=132;Dels=0.00;FS=9.599;HaplotypeScore=7.3620;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=2.565;QD=19.60;ReadPosRankSum=2.529;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:5,126:132:99:2620,306,0 chrIII 22184 . A C 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.03;FS=0.000;HaplotypeScore=14.4980;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.010;QD=18.84;ReadPosRankSum=2.316;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2539,303,0 chrIII 22203 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.47;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2490,291,0 chrIII 22290 . C A 1993 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.28;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2026,240,0 chrIII 22292 . C A 2047 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.61;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2080,246,0 chrIII 22397 . G A 1357 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.88;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1390,162,0 chrIII 23002 . A G 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.084;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.6096;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.461;QD=20.98;ReadPosRankSum=-0.449;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4301,478,0 chrIII 23149 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.5909;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.534;QD=21.39;ReadPosRankSum=1.710;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3380,390,0 chrIII 23272 . A G 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=126;Dels=0.00;FS=5.885;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.057;QD=18.83;ReadPosRankSum=2.831;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2406,288,0 chrIII 23502 . A G 2254 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.68;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2287,264,0 chrIII 23627 . T A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.25;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3977,450,0 chrIII 24059 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1067;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.70;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3188,375,0 chrIII 24119 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=24.13;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2591,303,0 chrIII 24173 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=24.00;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2457,288,0 chrIII 24329 . A G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=159;Dels=0.00;FS=5.002;HaplotypeScore=10.0784;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=-0.566;QD=17.89;ReadPosRankSum=3.404;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:4,155:159:99:2877,345,0 chrIII 24336 . G A 2615 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=17.32;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2648,309,0 chrIII 24352 . A G 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-1.307;QD=15.94;ReadPosRankSum=1.711;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:2647,315,0 chrIII 24366 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=15.89;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2623,315,0 chrIII 24492 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.749;DP=173;Dels=0.00;FS=2.583;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.632;QD=21.73;ReadPosRankSum=2.936;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3760,441,0 chrIII 24833 . C G 2913 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2946,342,0 chrIII 25125 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.28;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2714,306,0 chrIII 25355 . G T 2084 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.48;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2117,252,0 chrIII 25689 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.32;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4115,486,0 chrIII 25808 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.4316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3590,414,0 chrIII 25895 . A G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.696;QD=22.25;ReadPosRankSum=1.678;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2859,327,0 chrIII 25999 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=168;Dels=0.00;FS=8.833;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.037;QD=22.49;ReadPosRankSum=2.420;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,163:168:99:3778,435,0 chrIII 26164 . A G 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=181;Dels=0.00;FS=6.442;HaplotypeScore=8.0647;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.239;QD=23.46;ReadPosRankSum=2.204;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4247,486,0 chrIII 26423 . A G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.538;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.436;QD=21.88;ReadPosRankSum=1.573;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2899,353,0 chrIII 26769 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.44;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3645,429,0 chrIII 26798 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.50;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,142:147:99:2752,335,0 chrIII 26807 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=4.378;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.656;QD=20.57;ReadPosRankSum=1.707;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2872,330,0 chrIII 26923 . A C 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5681;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.506;QD=19.52;ReadPosRankSum=1.705;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2609,306,0 chrIII 27372 . T A 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.164;DP=162;Dels=0.00;FS=3.539;HaplotypeScore=19.7124;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.138;QD=17.08;ReadPosRankSum=4.110;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:6,156:162:99:2800,316,0 chrIII 27426 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.38;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3218,381,0 chrIII 27559 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.27;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2283,261,0 chrIII 27651 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=58.2305;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.53;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2067,234,0 chrIII 27717 . T C 1065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=87;Dels=0.00;FS=3.062;HaplotypeScore=5.5954;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.845;QD=12.24;ReadPosRankSum=1.734;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1098,129,0 chrIII 27724 . G C 1140 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=13.41;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1173,141,0 chrIII 28015 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=151;Dels=0.00;FS=3.632;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.531;QD=21.19;ReadPosRankSum=1.686;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3233,372,0 chrIII 28362 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.63;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3643,420,0 chrIII 28477 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=188;Dels=0.00;FS=4.678;HaplotypeScore=24.0380;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.084;QD=22.68;ReadPosRankSum=1.713;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:4263,492,0 chrIII 28543 . G A 5136.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.76;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5136,588,0 chrIII 28567 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.89;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4326,489,0 chrIII 28570 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=228;Dels=0.00;FS=5.077;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.105;QD=17.86;ReadPosRankSum=3.315;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:4,224:228:99:4072,471,0 chrIII 28597 . G A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=17.58;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3921,444,0 chrIII 28819 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5913;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.33;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2839,333,0 chrIII 28954 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1749,201,0 chrIII 29095 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.1648;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.698;QD=23.15;ReadPosRankSum=1.160;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2417,279,0 chrIII 29478 . A G 10.48 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;DP=22;Dels=0.00;FS=19.117;HaplotypeScore=5.7355;MLEAC=1;MLEAF=0.500;MQ=32.66;MQ0=0;MQRankSum=-0.986;QD=0.48;ReadPosRankSum=2.070;SB=-1.411e+01 GT:AD:DP:GQ:PL 0/1:15,5:22:15:40,0,15 chrIII 29500 . T C 470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.547;QD=12.37;ReadPosRankSum=1.641;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:60:503,60,0 chrIII 29520 . A G 734 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=14.39;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,49:51:87:767,87,0 chrIII 29611 . T A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.949;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=51.2249;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.110;QD=0.30;ReadPosRankSum=-2.406;SB=-1.076e+01 GT:AD:DP:GQ:PL 1/1:54,2:56:6:48,6,0 chrIII 29668 . G A 1262 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=21.39;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1295,147,0 chrIII 29722 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=1.697;QD=18.59;ReadPosRankSum=1.697;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1892,219,0 chrIII 29724 . A T 1867 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.30;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1900,219,0 chrIII 29922 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.37;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2471,288,0 chrIII 29968 . T A 2225 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.99;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2258,273,0 chrIII 30008 . A C 1973 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.77;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2006,231,0 chrIII 30246 . C A 2520 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.91;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2553,294,0 chrIII 30360 . G T 1588 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.37;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1621,198,0 chrIII 30411 . A C 1854 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1887,219,0 chrIII 30586 . C T 1158 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.85;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1191,138,0 chrIII 30676 . C A 1213 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=22.89;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1246,144,0 chrIII 31129 . A G 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.310;QD=21.98;ReadPosRankSum=1.659;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2121,252,0 chrIII 31156 . A C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=2.788;HaplotypeScore=73.0192;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.167;QD=22.03;ReadPosRankSum=2.347;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2148,246,0 chrIII 31227 . T A 1550 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.6981;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=17.61;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1583,186,0 chrIII 31646 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=162;Dels=0.00;FS=2.982;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.468;QD=22.62;ReadPosRankSum=2.419;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3665,423,0 chrIII 32243 . G C 2419 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.61;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2452,294,0 chrIII 32320 . A G 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=126;Dels=0.00;FS=3.417;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.338;QD=22.46;ReadPosRankSum=1.704;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2863,330,0 chrIII 32441 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.8364;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.28;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3676,423,0 chrIII 32547 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3559,422,0 chrIII 32624 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.27;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3094,371,0 chrIII 33425 . T A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3990,462,0 chrIII 33467 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.68;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3837,438,0 chrIII 33569 . A C 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.691;DP=195;Dels=0.00;FS=5.852;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.571;QD=20.48;ReadPosRankSum=2.953;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:3,189:195:99:3993,465,0 chrIII 33692 . A G 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=203;Dels=0.00;FS=7.302;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.287;QD=20.98;ReadPosRankSum=2.352;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,199:203:99:4259,501,0 chrIII 33742 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.2057;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.21;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3738,441,0 chrIII 33800 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.43;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3815,455,0 chrIII 33845 . A G 3806.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.75;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3806,455,0 chrIII 33971 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.50;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2744,321,0 chrIII 34008 . T C 3121 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.67;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3154,369,0 chrIII 34127 . C A 2497 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.24;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2530,288,0 chrIII 34197 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.2691;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.27;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2500,288,0 chrIII 34434 . T C 2340 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.83;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2373,285,0 chrIII 34436 . A C 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.105;QD=20.83;ReadPosRankSum=1.672;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2429,282,0 chrIII 34749 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.0497;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.02;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3743,435,0 chrIII 34905 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.6425;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.94;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3883,450,0 chrIII 35124 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.50;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2849,333,0 chrIII 35166 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.29;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2907,345,0 chrIII 35198 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.6939;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.72;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3612,408,0 chrIII 36067 . C T 5050.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.8939;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.75;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5050,570,0 chrIII 36103 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.11;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4621,522,0 chrIII 36125 . A G 4125.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.26;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4125,477,0 chrIII 36579 . G C 4514.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=19.0036;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.70;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4514,522,0 chrIII 36653 . G A 4534.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.3477;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.80;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4534,522,0 chrIII 36701 . A G 5128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=237;Dels=0.00;FS=3.499;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.290;QD=21.64;ReadPosRankSum=1.688;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5128,597,0 chrIII 36813 . A G 5764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=271;Dels=0.00;FS=3.276;HaplotypeScore=10.7532;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.680;QD=21.27;ReadPosRankSum=1.681;SB=-3.152e+03 GT:AD:DP:GQ:PL 1/1:1,269:271:99:5764,701,0 chrIII 36914 . T C 7258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=308;Dels=0.00;FS=5.812;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.853;QD=23.56;ReadPosRankSum=2.977;SB=-3.312e+03 GT:AD:DP:GQ:PL 1/1:3,304:308:99:7258,845,0 chrIII 36977 . G A 5189.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.89;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5189,600,0 chrIII 37129 . C T 5161.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.2748;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.70;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,258:262:99:5161,611,0 chrIII 37154 . C T 4974.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.6342;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.35;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4974,579,0 chrIII 37180 . G C 5116.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.06;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,248:255:99:5116,602,0 chrIII 37525 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.181;QD=21.64;ReadPosRankSum=1.715;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4349,515,0 chrIII 37664 . A G 1090 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.80;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1123,132,0 chrIII 37687 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.96;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1031,117,0 chrIII 37731 . C T 545 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.96;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:69:578,69,0 chrIII 38022 . G A 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=4.638;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.595;QD=22.75;ReadPosRankSum=0.677;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2968,336,0 chrIII 38178 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=3.479;HaplotypeScore=11.4530;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.142;QD=20.32;ReadPosRankSum=1.653;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3577,440,0 chrIII 38318 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3714;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3911,447,0 chrIII 38619 . T C 2720 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4741;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.92;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2753,330,0 chrIII 38664 . A G 2351 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.66;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2384,279,0 chrIII 38706 . C A 2195 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.25;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2228,267,0 chrIII 38814 . T G 2196 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2229,264,0 chrIII 38857 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1820,213,0 chrIII 39123 . A T 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=148;Dels=0.00;FS=4.893;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.561;QD=21.49;ReadPosRankSum=1.708;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3213,372,0 chrIII 39265 . T C 4373.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.31;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4373,504,0 chrIII 39281 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.59;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3933,462,0 chrIII 39512 . A G 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;MQRankSum=-0.966;QD=19.78;ReadPosRankSum=1.696;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1912,225,0 chrIII 39524 . G C 1692 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;QD=19.01;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1725,201,0 chrIII 39525 . A C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;MQRankSum=-1.653;QD=18.28;ReadPosRankSum=1.693;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1642,192,0 chrIII 39539 . T A 1403 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=16.51;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1436,168,0 chrIII 39540 . C A 1411 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=16.80;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1444,165,0 chrIII 39552 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=15.16;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1352,159,0 chrIII 39706 . T C 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=83;Dels=0.00;FS=3.047;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-1.559;QD=22.47;ReadPosRankSum=2.391;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1898,222,0 chrIII 39861 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.23;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3391,390,0 chrIII 40089 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.9260;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.87;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3052,345,0 chrIII 40109 . C A 2765 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.07;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2798,333,0 chrIII 40130 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.76;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2715,309,0 chrIII 40144 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.44;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2771,315,0 chrIII 40200 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=14.82;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:1886,228,0 chrIII 40205 . A T 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=129;Dels=0.00;FS=6.767;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.086;QD=16.50;ReadPosRankSum=2.354;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2162,258,0 chrIII 40294 . G A 4742.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.71;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4742,575,0 chrIII 40374 . G C 4566.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.95;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4566,539,0 chrIII 40637 . G A 4658.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.4194;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.08;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4658,528,0 chrIII 40893 . G A 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.698;DP=75;Dels=0.00;FS=24.544;HaplotypeScore=65.6994;MLEAC=1;MLEAF=0.500;MQ=44.58;MQ0=0;MQRankSum=-4.067;QD=1.81;ReadPosRankSum=-3.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,36:75:99:166,0,108 chrIII 40894 . G A 135.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.043;DP=77;Dels=0.00;FS=33.966;HaplotypeScore=66.4880;MLEAC=1;MLEAF=0.500;MQ=45.04;MQ0=0;MQRankSum=-4.162;QD=1.75;ReadPosRankSum=-5.222;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:38,38:77:99:165,0,273 chrIII 40987 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.0852;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.94;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3497,425,0 chrIII 41007 . T G 2664 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.18;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2697,306,0 chrIII 41015 . T C 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.679;DP=137;Dels=0.00;FS=2.324;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.143;QD=17.51;ReadPosRankSum=3.713;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:5,132:137:99:2432,288,0 chrIII 41289 . T C 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=5.658;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.525;QD=22.26;ReadPosRankSum=1.713;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4141,480,0 chrIII 41451 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=186;Dels=0.00;FS=4.940;HaplotypeScore=13.6524;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.602;QD=23.40;ReadPosRankSum=1.713;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4352,504,0 chrIII 41852 . T C 446 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=15.38;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:29:54:479,54,0 chrIII 42410 . G C 3143 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.09;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3176,366,0 chrIII 42419 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=146;Dels=0.00;FS=3.040;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.753;QD=19.81;ReadPosRankSum=2.398;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,140:146:99:2925,339,0 chrIII 42698 . C G 2811 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.13;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2844,336,0 chrIII 42728 . A C 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=136;Dels=0.00;FS=3.209;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.129;QD=21.54;ReadPosRankSum=1.706;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2962,342,0 chrIII 42761 . A C 2565 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.52;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2598,303,0 chrIII 43107 . T G 2801 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7821;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.90;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2834,347,0 chrIII 43304 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.85;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4068,474,0 chrIII 43346 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.67;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3771,432,0 chrIII 43513 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.44;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1877,213,0 chrIII 43528 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.92;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1660,204,0 chrIII 43618 . C T 90.26 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=13.2440;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=3.47;SB=-1.483e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:15:123,15,0 chrIII 43868 . G A 2362 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.36;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2395,285,0 chrIII 43874 . G A 2507 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.59;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2540,306,0 chrIII 43877 . G A 2769 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.30;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2802,318,0 chrIII 44541 . G A 144.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.322;DP=102;Dels=0.02;FS=18.523;HaplotypeScore=17.5362;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=2.096;QD=1.41;ReadPosRankSum=-1.493;SB=-6.011e+02 GT:AD:DP:GQ:PL 1/1:10,90:100:21:177,21,0 chrIII 45058 . A T 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.351;QD=20.56;ReadPosRankSum=1.711;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3475,419,0 chrIII 45417 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3439,402,0 chrIII 45638 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.42;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4493,510,0 chrIII 45755 . C T 4842.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.52;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4842,552,0 chrIII 45811 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=9.0240;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.87;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3881,453,0 chrIII 45836 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=17.81;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3185,381,0 chrIII 45838 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.93;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3224,384,0 chrIII 46119 . G A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.6474;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.61;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3669,420,0 chrIII 46258 . C T 4982.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.57;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4982,587,0 chrIII 46458 . T C 5370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=252;Dels=0.00;FS=3.025;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.124;QD=21.31;ReadPosRankSum=2.342;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:2,248:252:99:5370,618,0 chrIII 46562 . T A 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=197;Dels=0.00;FS=7.644;HaplotypeScore=6.8075;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.318;QD=21.35;ReadPosRankSum=2.350;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4205,477,0 chrIII 46705 . G A 4860.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.50;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4860,546,0 chrIII 46714 . T A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.83;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4084,491,0 chrIII 47161 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.53;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2927,330,0 chrIII 47306 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.94;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3915,453,0 chrIII 47501 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.52;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3058,366,0 chrIII 47940 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.52;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3357,390,0 chrIII 48029 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7093;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.04;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2811,333,0 chrIII 48382 . G C 2964 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.03;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2997,359,0 chrIII 48493 . C A 2822 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.38;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2855,333,0 chrIII 48505 . T G 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=9.842;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.116;QD=21.90;ReadPosRankSum=1.706;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3012,351,0 chrIII 48544 . A G 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.128;QD=18.10;ReadPosRankSum=3.740;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:5,136:143:99:2621,306,0 chrIII 48704 . A G,T 991.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.200;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=73.6320;MLEAC=1,1;MLEAF=0.500,0.500;MQ=39.87;MQ0=0;MQRankSum=-0.703;QD=5.27;ReadPosRankSum=-3.971;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/2:27,68,93:188:99:1051,290,182,761,0,722 chrIII 48707 . G A 659.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.630;DP=192;Dels=0.00;FS=2.334;HaplotypeScore=83.8576;MLEAC=1;MLEAF=0.500;MQ=40.21;MQ0=0;MQRankSum=-1.161;QD=3.43;ReadPosRankSum=-8.664;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:127,65:192:99:689,0,231 chrIII 49313 . G A 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=243;Dels=0.00;FS=3.176;HaplotypeScore=12.5054;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.208;QD=20.82;ReadPosRankSum=1.128;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5060,608,0 chrIII 49400 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=18.3308;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.23;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4511,516,0 chrIII 49436 . T C 5355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.178;QD=21.95;ReadPosRankSum=1.718;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5355,632,0 chrIII 49655 . G A 6327.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.88;SB=-3.841e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:6327,717,0 chrIII 50099 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2713,306,0 chrIII 50269 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.16;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1847,210,0 chrIII 50504 . C T 491 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.35;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:60:524,60,0 chrIII 50560 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=33.4787;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;QD=0.63;SB=-7.477e+01 GT:AD:DP:GQ:PL 1/1:0,34:36:6:54,6,0 chrIII 50675 . T C 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=14.7186;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.666;QD=15.76;ReadPosRankSum=1.694;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1483,174,0 chrIII 51152 . C G 4383.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.5431;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.81;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:4383,533,0 chrIII 51209 . A C 5965.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=25.6811;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.53;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5965,693,0 chrIII 51551 . C G 5678.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=18.56;SB=-3.459e+03 GT:AD:DP:GQ:PL 1/1:0,303:306:99:5678,686,0 chrIII 51650 . G A 6400.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=19.5476;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.19;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6400,729,0 chrIII 51791 . A G 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.575;DP=249;Dels=0.00;FS=16.526;HaplotypeScore=32.5713;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.575;QD=20.56;ReadPosRankSum=3.784;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:5,241:249:99:5119,594,0 chrIII 51852 . T C 5947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.733;QD=22.19;ReadPosRankSum=1.693;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:1,266:268:99:5947,690,0 chrIII 52208 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.44;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2755,321,0 chrIII 52238 . A G 2006 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.6328;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=17.29;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2039,237,0 chrIII 52256 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=14.65;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2011,248,0 chrIII 52365 . G C 1213 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=16.17;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1246,144,0 chrIII 52383 . T C 975 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=16.53;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1008,120,0 chrIII 52417 . T A 155.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=4.771;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.579;QD=12.92;ReadPosRankSum=1.448;SB=-8.504e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:21:188,21,0 chrIII 52450 . T C 197.01 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=10.37;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:230,27,0 chrIII 52455 . A G 208 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=10.40;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:241,30,0 chrIII 52456 . A G 217 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=10.85;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:250,30,0 chrIII 52460 . C T 238 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=10.82;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:271,33,0 chrIII 52475 . G A 310 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=11.07;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:42:343,42,0 chrIII 52533 . T C 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=-1.178;QD=20.60;ReadPosRankSum=1.663;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1063,129,0 chrIII 52564 . C T 1582 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=21.67;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1615,189,0 chrIII 52606 . A T 2368 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.68;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2401,279,0 chrIII 52699 . G A 1929 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=19.48;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1962,228,0 chrIII 52700 . C A 1948 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=20.29;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1981,228,0 chrIII 52716 . T C 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=-0.425;QD=16.21;ReadPosRankSum=1.699;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1751,218,0 chrIII 52747 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=14.73;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1742,207,0 chrIII 52762 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=15.06;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1915,222,0 chrIII 52764 . A G 1845 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=14.88;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1878,222,0 chrIII 52792 . A G 2406 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.5071;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=15.04;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2439,294,0 chrIII 52936 . A C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=7.051;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.805;QD=18.97;ReadPosRankSum=1.635;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2727,327,0 chrIII 52945 . T C 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-0.933;QD=17.97;ReadPosRankSum=1.679;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2369,285,0 chrIII 52972 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=16.22;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:2,113:117:99:1931,225,0 chrIII 53064 . T C 4376.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.64;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:4376,513,0 chrIII 53891 . T C 6937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=17.4169;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.059;QD=21.95;ReadPosRankSum=2.371;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,312:316:99:6937,809,0 chrIII 54153 . C A 4970.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=27.6262;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.12;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:4970,593,0 chrIII 54364 . T C 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.715;QD=23.22;ReadPosRankSum=-0.658;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4643,534,0 chrIII 54441 . C T 4754.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.9234;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.13;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4754,552,0 chrIII 54535 . T C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.60;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3845,450,0 chrIII 54588 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=145;Dels=0.00;FS=9.308;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.273;QD=19.86;ReadPosRankSum=2.937;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2912,333,0 chrIII 54609 . A C 3078 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.80;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3111,363,0 chrIII 54721 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.06;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2200,252,0 chrIII 54846 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.2593;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.72;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2835,330,0 chrIII 54912 . A G 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=82;Dels=0.00;FS=4.225;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.141;QD=18.56;ReadPosRankSum=1.648;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1555,177,0 chrIII 55133 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.91;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3324,387,0 chrIII 55223 . G C 4148.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4148,494,0 chrIII 55716 . A G 4943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=212;Dels=0.00;FS=15.081;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.691;QD=23.32;ReadPosRankSum=2.967;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:3,208:212:99:4943,573,0 chrIII 55895 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.259;DP=229;Dels=0.00;FS=1.768;HaplotypeScore=20.0181;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.657;QD=19.43;ReadPosRankSum=2.227;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:5,221:229:99:4449,501,0 chrIII 56090 . A T 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.538;QD=18.86;ReadPosRankSum=1.662;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2862,345,0 chrIII 56105 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.04;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3180,381,0 chrIII 56309 . C T 4517.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.93;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4517,519,0 chrIII 56873 . G A 538 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=20.69;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:66:571,66,0 chrIII 56979 . G A 331 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:42:364,42,0 chrIII 57256 . T G 304 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=13.82;SB=-7.608e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:337,39,0 chrIII 57303 . A G 919 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=18.76;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:952,120,0 chrIII 57359 . A G 1296 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1329,165,0 chrIII 57542 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.7210;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.79;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3552,411,0 chrIII 57639 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.40;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3488,408,0 chrIII 57658 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.13;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3674,423,0 chrIII 58466 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=218;Dels=0.00;FS=2.676;HaplotypeScore=18.2081;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.714;QD=18.93;ReadPosRankSum=2.359;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:4126,474,0 chrIII 58613 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.1554;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.92;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3098,354,0 chrIII 59117 . C A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.36;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4080,471,0 chrIII 59171 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=3.026;HaplotypeScore=16.3384;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.821;QD=20.79;ReadPosRankSum=2.381;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3722,441,0 chrIII 59458 . C A 5505.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.1131;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.93;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5505,627,0 chrIII 59574 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=17.40;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:3758,449,0 chrIII 59578 . T C 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.598;QD=17.82;ReadPosRankSum=1.717;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:4010,462,0 chrIII 59829 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.69;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3765,426,0 chrIII 60463 . G A 5232.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.82;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5232,629,0 chrIII 60718 . A G 1496 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.087;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.609;QD=14.96;ReadPosRankSum=3.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,96:100:99:1529,186,0 chrIII 60775 . C T 118.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=5.91;SB=-1.271e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:18:151,18,0 chrIII 60781 . C T 117.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=7.32;SB=-1.291e+02 GT:AD:DP:GQ:PL 1/1:0,15:16:18:150,18,0 chrIII 60880 . A G 2161 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2194,272,0 chrIII 61184 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.46;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1510,174,0 chrIII 61358 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.90;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2830,315,0 chrIII 61457 . T G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.980;QD=22.58;ReadPosRankSum=1.667;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2427,285,0 chrIII 61954 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.7132;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.16;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3568,402,0 chrIII 62244 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.36;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4250,483,0 chrIII 62386 . A G 5246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.265;DP=259;Dels=0.00;FS=13.563;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.571;QD=20.25;ReadPosRankSum=3.407;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:4,254:259:99:5246,626,0 chrIII 62415 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.4738;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.70;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4216,492,0 chrIII 62698 . T A 1958 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=16.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1991,234,0 chrIII 62750 . T C 321 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=11.1431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.92;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:42:354,42,0 chrIII 63228 . T A 5178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=269;Dels=0.00;FS=5.849;HaplotypeScore=14.1156;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.355;QD=19.25;ReadPosRankSum=2.422;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:3,266:269:99:5178,606,0 chrIII 63257 . A G 5602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=261;Dels=0.00;FS=2.721;HaplotypeScore=13.4281;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.864;QD=21.46;ReadPosRankSum=2.421;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:2,258:261:99:5602,651,0 chrIII 63379 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.16;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4055,488,0 chrIII 63402 . G C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.11;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4113,477,0 chrIII 63611 . T C 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.9235;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.714;QD=21.46;ReadPosRankSum=1.697;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4228,489,0 chrIII 63878 . C G 4738.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.63;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:4738,546,0 chrIII 63898 . G A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.19;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4514,513,0 chrIII 63929 . C T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.0938;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.27;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4336,521,0 chrIII 64169 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.21;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3660,434,0 chrIII 64232 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8918;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.01;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3278,381,0 chrIII 64304 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.61;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3400,413,0 chrIII 64511 . A C 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.808;QD=21.57;ReadPosRankSum=1.655;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1974,228,0 chrIII 64591 . C T 387 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:48:420,48,0 chrIII 64729 . A G 1137 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.19;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1170,132,0 chrIII 65119 . T C 4010.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.99;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4010,471,0 chrIII 65134 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=19.37;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3467,402,0 chrIII 65143 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=3.208;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.366;QD=18.94;ReadPosRankSum=1.713;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3410,393,0 chrIII 65215 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.10;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3108,371,0 chrIII 65279 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.81;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3558,408,0 chrIII 65358 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.61;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3166,375,0 chrIII 65554 . G C 3043 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.56;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3076,357,0 chrIII 65580 . C G 2660 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.84;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2693,318,0 chrIII 65589 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9828;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.48;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2882,330,0 chrIII 65637 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.04;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2775,315,0 chrIII 65679 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.84;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2445,282,0 chrIII 65680 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.90;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2540,285,0 chrIII 65735 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.53;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1860,219,0 chrIII 66138 . G C 4497.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.90;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4497,548,0 chrIII 66156 . A G 4656.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.98;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4656,546,0 chrIII 66477 . A G 4182.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=227;Dels=0.00;FS=5.907;HaplotypeScore=4.5647;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-0.453;QD=18.42;ReadPosRankSum=2.916;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:4182,494,0 chrIII 66483 . C T 4397.01 SnpCluster AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.12;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4397,504,0 chrIII 66486 . T C 4358.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=232;Dels=0.00;FS=3.699;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.567;QD=18.78;ReadPosRankSum=1.702;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4358,513,0 chrIII 66729 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=17.4773;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.68;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3620,420,0 chrIII 67277 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0257;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.64;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4025,459,0 chrIII 67347 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.47;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3330,393,0 chrIII 67416 . T A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0386;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.49;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3740,426,0 chrIII 67455 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.01;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3322,381,0 chrIII 67554 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.0132;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.93;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3063,368,0 chrIII 67668 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=160;Dels=0.00;FS=6.051;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.843;QD=20.45;ReadPosRankSum=2.918;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3272,398,0 chrIII 67764 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.89;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3891,447,0 chrIII 67820 . T C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=135;Dels=0.00;FS=5.928;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;MQRankSum=0.229;QD=17.35;ReadPosRankSum=2.871;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:3,129:135:99:2375,276,0 chrIII 67844 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=15.66;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2225,258,0 chrIII 67854 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;MQRankSum=-1.639;QD=14.31;ReadPosRankSum=1.709;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2165,264,0 chrIII 67872 . G T 2210 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=14.35;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2243,261,0 chrIII 67884 . A C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=0.441;QD=14.17;ReadPosRankSum=1.646;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2315,264,0 chrIII 68046 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=197;Dels=0.00;FS=5.247;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=-1.204;QD=17.86;ReadPosRankSum=3.415;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:4,192:197:99:3518,422,0 chrIII 68058 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=-0.504;QD=17.60;ReadPosRankSum=1.682;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:3626,426,0 chrIII 68070 . T G 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;MQRankSum=-0.144;QD=17.17;ReadPosRankSum=1.664;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:3519,411,0 chrIII 68095 . G C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=16.99;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:3550,422,0 chrIII 68236 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.86;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3978,459,0 chrIII 68372 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.00;FS=3.212;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.262;QD=20.90;ReadPosRankSum=1.680;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2813,333,0 chrIII 68424 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.30;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2712,309,0 chrIII 68442 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=17.95;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2043,237,0 chrIII 68443 . A G 1918 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.44;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1951,231,0 chrIII 68748 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=193;Dels=0.00;FS=8.466;HaplotypeScore=17.1067;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.234;QD=19.15;ReadPosRankSum=2.411;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,188:193:99:3695,432,0 chrIII 68844 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.77;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3579,408,0 chrIII 68852 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.86;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3357,399,0 chrIII 69091 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=3.241;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.090;QD=20.48;ReadPosRankSum=1.702;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:4772,578,0 chrIII 69509 . T C 5948.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=10.7161;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.58;SB=-3.554e+03 GT:AD:DP:GQ:PL 1/1:0,286:289:99:5948,695,0 chrIII 69652 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=231;Dels=0.00;FS=8.083;HaplotypeScore=21.6031;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.275;QD=19.17;ReadPosRankSum=2.428;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:4429,533,0 chrIII 69718 . A G 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=228;Dels=0.00;FS=2.875;HaplotypeScore=11.5312;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.059;QD=19.79;ReadPosRankSum=2.385;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:2,225:228:99:4513,516,0 chrIII 70158 . G T 5466.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.5257;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5466,633,0 chrIII 70281 . A G 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=234;Dels=0.00;FS=7.460;HaplotypeScore=12.6617;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.627;QD=20.52;ReadPosRankSum=2.418;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:4802,587,0 chrIII 70425 . A T 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=275;Dels=0.00;FS=6.039;HaplotypeScore=13.3469;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.449;QD=21.45;ReadPosRankSum=2.945;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:3,272:275:99:5898,695,0 chrIII 70621 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=12.84;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:2344,270,0 chrIII 70862 . A G 5581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=244;Dels=0.00;FS=4.479;HaplotypeScore=17.9504;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=1.633;QD=22.87;ReadPosRankSum=1.718;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5581,653,0 chrIII 71079 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=252;Dels=0.00;FS=3.720;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-1.086;QD=9.82;ReadPosRankSum=0.921;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:2507,291,0 chrIII 71223 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=19.56;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3065,357,0 chrIII 71229 . G C 2701 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=17.54;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2734,327,0 chrIII 71247 . C T 2195 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=17.15;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2228,275,0 chrIII 71298 . G C 1859 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=17.54;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1892,222,0 chrIII 71690 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=162;Dels=0.00;FS=7.524;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=1.152;QD=19.93;ReadPosRankSum=2.404;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3262,398,0 chrIII 71709 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=20.30;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3180,366,0 chrIII 71760 . C T 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=122.5391;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=1.515;QD=17.99;ReadPosRankSum=1.203;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2588,300,0 chrIII 71868 . C G 2538 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.23;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2571,314,0 chrIII 71985 . G T 2648 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0561;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.19;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2681,309,0 chrIII 72190 . T C 2711 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.35;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2744,327,0 chrIII 72452 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.15;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3648,440,0 chrIII 72477 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.8396;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.33;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4118,497,0 chrIII 72581 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.8142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3784,435,0 chrIII 72786 . T C 4867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=235;Dels=0.00;FS=2.497;HaplotypeScore=21.3744;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.680;QD=20.71;ReadPosRankSum=2.970;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:4867,584,0 chrIII 73083 . C T 5318.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.25;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5318,632,0 chrIII 73233 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2067;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.670;QD=21.48;ReadPosRankSum=1.713;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4017,471,0 chrIII 73255 . T A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.58;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3952,465,0 chrIII 73624 . C A 6224.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=9.0133;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.24;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6224,717,0 chrIII 74002 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1028;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.00;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3652,420,0 chrIII 74074 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=174;Dels=0.00;FS=2.959;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.433;QD=23.38;ReadPosRankSum=2.421;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4068,477,0 chrIII 74202 . C T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.23;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4357,498,0 chrIII 74327 . C A 3056 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5779;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.11;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3089,357,0 chrIII 74346 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=138;Dels=0.00;FS=2.958;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.014;QD=20.91;ReadPosRankSum=2.414;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2919,339,0 chrIII 74505 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0228;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.98;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2223,267,0 chrIII 74577 . T C 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.056;QD=20.75;ReadPosRankSum=1.704;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2585,297,0 chrIII 74683 . C G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.47;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3249,381,0 chrIII 74863 . C G 4836.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.21;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4836,587,0 chrIII 75025 . T C 4576.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.32;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4576,528,0 chrIII 75053 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.83;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4625,531,0 chrIII 75088 . T A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.17;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4294,489,0 chrIII 75202 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.16;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4316,509,0 chrIII 75235 . G A 4106.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.32;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4106,468,0 chrIII 75469 . C T 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.059;DP=110;Dels=0.02;FS=4.314;HaplotypeScore=8.4465;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.192;QD=18.51;ReadPosRankSum=1.540;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2069,234,0 chrIII 75546 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.99;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2615,312,0 chrIII 75770 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.85;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2524,294,0 chrIII 75791 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.09;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2273,255,0 chrIII 75863 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.22;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1711,195,0 chrIII 75866 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.27;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1655,186,0 chrIII 76147 . T G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3515;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.038;QD=20.80;ReadPosRankSum=1.606;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2924,356,0 chrIII 76198 . A T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6806;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.31;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3659,435,0 chrIII 76585 . G A 4752.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4752,540,0 chrIII 76741 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.6824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4524,539,0 chrIII 76973 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.63;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3825,432,0 chrIII 77317 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.6490;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.53;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3880,464,0 chrIII 77350 . G A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=18.8047;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.94;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4426,536,0 chrIII 77505 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.654;QD=20.08;ReadPosRankSum=1.717;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4518,531,0 chrIII 77689 . T A 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.7855;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.569;QD=21.38;ReadPosRankSum=1.651;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4575,519,0 chrIII 77849 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.83;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3471,396,0 chrIII 77866 . T A 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=4.060;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.797;QD=18.26;ReadPosRankSum=1.626;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3009,351,0 chrIII 77900 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=190;Dels=0.00;FS=2.716;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.898;QD=17.68;ReadPosRankSum=2.398;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3359,390,0 chrIII 77985 . C T 4293.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.6105;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.44;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4293,489,0 chrIII 78007 . T A 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=219;Dels=0.00;FS=3.019;HaplotypeScore=10.6708;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.331;QD=21.86;ReadPosRankSum=2.371;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4788,543,0 chrIII 78056 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1709;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.77;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4180,474,0 chrIII 78080 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.4029;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.49;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3998,473,0 chrIII 78256 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.99;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4267,509,0 chrIII 78681 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.396;QD=21.68;ReadPosRankSum=1.698;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2266,261,0 chrIII 78705 . G T 2286 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.98;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2319,264,0 chrIII 78951 . A T 2869 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.13;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2902,333,0 chrIII 78952 . A T 2759 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=18.03;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2792,333,0 chrIII 79096 . G T 5291.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=16.1796;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.95;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5291,623,0 chrIII 79170 . G A 5541.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=13.5072;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.25;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5541,668,0 chrIII 79460 . A G 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.581;DP=161;Dels=0.00;FS=5.241;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.931;QD=19.42;ReadPosRankSum=2.906;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3159,372,0 chrIII 79916 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.0158;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.37;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3075,345,0 chrIII 80460 . G C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.96;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3306,381,0 chrIII 80844 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.197;QD=20.99;ReadPosRankSum=1.711;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3421,419,0 chrIII 80883 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.21;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3478,419,0 chrIII 80991 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.65;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3237,375,0 chrIII 81561 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.07;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3611,417,0 chrIII 81594 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.9780;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.75;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3491,411,0 chrIII 81626 . C G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.95;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3260,390,0 chrIII 81797 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.44;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2690,309,0 chrIII 81816 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.30;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2997,339,0 chrIII 81844 . G C 2699 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.3887;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=19.01;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2732,321,0 chrIII 82074 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.93;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2379,279,0 chrIII 82246 . T A 1076 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.93;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1109,129,0 chrIII 82251 . A G 1042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-0.449;QD=19.30;ReadPosRankSum=1.604;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1075,123,0 chrIII 82315 . G A 444 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=16.1947;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=16.44;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:477,54,0 chrIII 82413 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=10.40;SB=-2.476e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrIII 82442 . G A 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.32;SB=-2.321e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:75,9,0 chrIII 82443 . T C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.99;SB=-2.621e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:80,9,0 chrIII 82445 . A C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrIII 82552 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrIII 82556 . A T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrIII 82623 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrIII 82632 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrIII 82660 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrIII 82699 . C T 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=16.4423;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=4;MQRankSum=0.140;QD=3.73;ReadPosRankSum=2.014;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:16,6:22:66:112,0,66 chrIII 83091 . T C 861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.076;DP=49;Dels=0.00;FS=3.332;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-1.187;QD=17.57;ReadPosRankSum=1.036;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:80:894,80,0 chrIII 83134 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=20.67;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1666,198,0 chrIII 83181 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=21.29;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2098,246,0 chrIII 83245 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=19.76;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2029,237,0 chrIII 83260 . A G 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=98;Dels=0.00;FS=13.662;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=0.144;QD=17.44;ReadPosRankSum=2.928;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1742,213,0 chrIII 83262 . T C 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=-1.258;QD=18.11;ReadPosRankSum=1.696;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1753,204,0 chrIII 83307 . T C 1234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=-0.157;QD=14.02;ReadPosRankSum=1.693;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1267,150,0 chrIII 83309 . T C 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=91;Dels=0.00;FS=2.885;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-1.109;QD=14.19;ReadPosRankSum=2.395;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1324,153,0 chrIII 83454 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=16.3302;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.88;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2943,339,0 chrIII 83597 . G T 3187 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.6220;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.98;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3220,366,0 chrIII 83644 . C G 3754.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.61;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3754,438,0 chrIII 83706 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=15.3355;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.739;QD=20.94;ReadPosRankSum=1.708;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,142:147:99:3111,374,0 chrIII 83824 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=1.089;QD=21.88;ReadPosRankSum=1.670;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3675,438,0 chrIII 83946 . C G 3558.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=21.56;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3558,420,0 chrIII 84023 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=18.93;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2815,344,0 chrIII 84048 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=41.3841;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=16.65;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1731,207,0 chrIII 84097 . C T 199.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.073;DP=75;Dels=0.00;FS=127.942;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=7;MQRankSum=6.009;QD=2.65;ReadPosRankSum=1.096;SB=-3.058e+00 GT:AD:DP:GQ:PL 0/1:44,31:75:17:229,0,17 chrIII 84099 . A G 209.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.063;DP=77;Dels=0.00;FS=154.429;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=8;MQRankSum=6.647;QD=2.72;ReadPosRankSum=1.897;SB=-3.102e+00 GT:AD:DP:GQ:PL 0/1:47,29:77:14:239,0,14 chrIII 84103 . A G 190.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;DP=80;Dels=0.00;FS=146.149;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=8;MQRankSum=6.820;QD=2.38;ReadPosRankSum=2.090;SB=-3.070e+00 GT:AD:DP:GQ:PL 0/1:51,29:80:16:220,0,16 chrIII 84109 . T C 224.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;DP=80;Dels=0.00;FS=146.149;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=8;MQRankSum=6.820;QD=2.80;ReadPosRankSum=0.517;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:51,29:80:11:254,0,11 chrIII 84111 . C T 223.34 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.465;DP=80;Dels=0.00;FS=146.149;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=8;MQRankSum=6.820;QD=2.79;ReadPosRankSum=-0.207;SB=-3.348e+00 GT:AD:DP:GQ:PL 0/1:51,29:80:8:253,0,8 chrIII 84112 . G C 224.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.065;DP=80;Dels=0.00;FS=143.910;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=8;MQRankSum=6.779;QD=2.80;ReadPosRankSum=-0.521;SB=-3.228e+00 GT:AD:DP:GQ:PL 0/1:50,29:80:10:254,0,10 chrIII 84114 . T C 218.34 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;DP=80;Dels=0.00;FS=146.149;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=8;MQRankSum=6.820;QD=2.73;ReadPosRankSum=-1.332;SB=-3.348e+00 GT:AD:DP:GQ:PL 0/1:51,29:80:8:248,0,8 chrIII 84116 . C G 212.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;DP=80;Dels=0.00;FS=146.149;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=8;MQRankSum=6.820;QD=2.65;ReadPosRankSum=-1.975;SB=-3.102e+00 GT:AD:DP:GQ:PL 0/1:51,29:80:14:242,0,14 chrIII 84117 . T C 214.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DP=80;Dels=0.00;FS=146.149;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=8;MQRankSum=6.820;QD=2.68;ReadPosRankSum=-2.101;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:51,29:80:11:244,0,11 chrIII 84133 . A G 390.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.275;DP=126;Dels=0.00;FS=242.487;HaplotypeScore=20.4422;MLEAC=1;MLEAF=0.500;MQ=22.92;MQ0=8;MQRankSum=8.601;QD=3.10;ReadPosRankSum=-7.210;SB=-3.229e+00 GT:AD:DP:GQ:PL 0/1:52,74:126:10:420,0,10 chrIII 84140 . T A 388.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.127;DP=132;Dels=0.04;FS=252.810;HaplotypeScore=72.7897;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=8;MQRankSum=8.616;QD=2.94;ReadPosRankSum=-7.670;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:51,76:127:12:421,12,0 chrIII 84143 . A G 375.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.783;DP=131;Dels=0.00;FS=221.005;HaplotypeScore=27.2840;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=8;MQRankSum=7.692;QD=2.86;ReadPosRankSum=-5.576;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:56,75:131:27:408,27,0 chrIII 84144 . A T 402.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.500;DP=131;Dels=0.00;FS=221.005;HaplotypeScore=21.3640;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=8;MQRankSum=7.930;QD=3.07;ReadPosRankSum=-5.301;SB=-2.026e-02 GT:AD:DP:GQ:PL 1/1:56,75:131:28:435,28,0 chrIII 84147 . T C 376 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.776;DP=130;Dels=0.00;FS=226.213;HaplotypeScore=21.3640;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=8;MQRankSum=8.723;QD=2.89;ReadPosRankSum=-5.050;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:54,75:130:51:409,51,0 chrIII 84149 . A G 378 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.755;DP=130;Dels=0.00;FS=226.213;HaplotypeScore=21.3640;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=8;MQRankSum=8.707;QD=2.91;ReadPosRankSum=-3.662;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:55,75:130:51:411,51,0 chrIII 84152 . C T 376 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.641;DP=138;Dels=0.00;FS=279.485;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=8;MQRankSum=9.198;QD=2.72;ReadPosRankSum=-4.130;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:49,88:138:51:409,51,0 chrIII 84161 . A G 478 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.783;DP=143;Dels=0.00;FS=280.619;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=7;MQRankSum=8.972;QD=3.34;ReadPosRankSum=1.316;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:47,96:143:60:511,60,0 chrIII 84165 . A G 438 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.500;DP=136;Dels=0.00;FS=267.310;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=7;MQRankSum=8.397;QD=3.22;ReadPosRankSum=3.367;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:46,90:136:57:471,57,0 chrIII 84166 . T C 487 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.263;DP=134;Dels=0.00;FS=285.465;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=7;MQRankSum=8.832;QD=3.63;ReadPosRankSum=3.271;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:44,90:134:60:520,60,0 chrIII 84179 . T C 461 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.961;DP=123;Dels=0.00;FS=215.777;HaplotypeScore=2.3168;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=7;MQRankSum=7.634;QD=3.75;ReadPosRankSum=6.003;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:32,91:123:57:494,57,0 chrIII 84181 . G A 455 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.650;DP=122;Dels=0.00;FS=209.112;HaplotypeScore=2.3168;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=7;MQRankSum=7.512;QD=3.73;ReadPosRankSum=6.101;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:31,91:122:57:488,57,0 chrIII 84190 . G A 599 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=100;Dels=0.00;FS=65.322;HaplotypeScore=6.9849;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=1;MQRankSum=4.389;QD=5.99;ReadPosRankSum=3.665;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:8,92:100:72:632,72,0 chrIII 84194 . C T 633 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=92;Dels=0.00;FS=28.436;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;MQRankSum=3.360;QD=6.88;ReadPosRankSum=2.805;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,88:92:78:666,78,0 chrIII 84195 . A G 560 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=1;MQRankSum=2.342;QD=6.09;ReadPosRankSum=2.396;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,89:92:72:593,72,0 chrIII 84204 . G A 632 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.166;DP=82;Dels=0.00;FS=61.991;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=2;MQRankSum=3.344;QD=7.71;ReadPosRankSum=1.556;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,76:82:78:665,78,0 chrIII 84205 . A G 607 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.689;DP=82;Dels=0.00;FS=61.991;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=2;MQRankSum=3.344;QD=7.40;ReadPosRankSum=1.446;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,76:82:78:640,78,0 chrIII 84208 . A G 652 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.364;DP=83;Dels=0.00;FS=74.086;HaplotypeScore=3.7452;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=2;MQRankSum=3.621;QD=7.86;ReadPosRankSum=1.697;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,76:83:78:685,78,0 chrIII 84209 . T A 657 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.167;DP=83;Dels=0.00;FS=74.086;HaplotypeScore=3.7452;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=2;MQRankSum=3.091;QD=7.92;ReadPosRankSum=1.521;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,76:83:81:690,81,0 chrIII 84216 . G A 598 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.242;DP=78;Dels=0.00;FS=72.666;HaplotypeScore=4.8896;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=2;MQRankSum=2.430;QD=7.67;ReadPosRankSum=-3.143;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:7,71:78:75:631,75,0 chrIII 84290 . T C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.546;DP=14;Dels=0.00;FS=14.771;HaplotypeScore=18.4828;MLEAC=2;MLEAF=1.00;MQ=20.28;MQ0=1;MQRankSum=2.166;QD=0.93;ReadPosRankSum=1.214;SB=1.28 GT:AD:DP:GQ:PL 1/1:8,3:14:6:44,6,0 chrIII 84305 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;DP=14;Dels=0.00;FS=3.090;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.99;MQ0=3;MQRankSum=2.262;QD=1.56;ReadPosRankSum=1.708;SB=1.30 GT:AD:DP:GQ:PL 1/1:10,4:14:6:53,6,0 chrIII 84735 . C T 386 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;QD=19.30;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:48:419,48,0 chrIII 90857 . T G 334 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;MQRankSum=-1.501;QD=4.45;ReadPosRankSum=1.686;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,74:75:42:367,42,0 chrIII 91977 . G A 5228.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.87;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5228,597,0 chrIII 92106 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.56;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4895,573,0 chrIII 92187 . C T 5172.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.69;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5172,594,0 chrIII 92193 . T C 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=254;Dels=0.00;FS=12.783;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.658;QD=19.98;ReadPosRankSum=3.364;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:4,249:254:99:5076,605,0 chrIII 92292 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.7771;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.46;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4291,495,0 chrIII 93455 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.5477;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.93;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3998,485,0 chrIII 93722 . A G 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=149;Dels=0.00;FS=5.455;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.463;QD=19.61;ReadPosRankSum=2.912;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:2955,348,0 chrIII 93980 . A G 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=17.9016;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=0.071;QD=17.80;ReadPosRankSum=0.679;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3130,366,0 chrIII 93992 . T G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=32.5476;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.882;QD=14.23;ReadPosRankSum=2.397;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:2723,335,0 chrIII 94230 . G A 4758.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=22.7735;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.99;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4758,552,0 chrIII 94470 . T G 1794 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.62;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1827,216,0 chrIII 94491 . T G 1496 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.24;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1529,177,0 chrIII 94514 . A G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;DP=74;Dels=0.00;FS=7.930;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.550;QD=18.66;ReadPosRankSum=2.350;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1414,165,0 chrIII 94576 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.35;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2766,315,0 chrIII 94592 . G C 3035 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.23;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3068,363,0 chrIII 94714 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.0321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.256;QD=21.40;ReadPosRankSum=1.710;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,159:164:99:3509,417,0 chrIII 94915 . C T 5819.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=18.9362;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.71;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:5819,660,0 chrIII 95062 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.80;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:4811,564,0 chrIII 95217 . C T 5615.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=12.3978;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.76;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5615,651,0 chrIII 95660 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.819;HaplotypeScore=12.9090;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.861;QD=19.28;ReadPosRankSum=1.710;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3118,380,0 chrIII 95776 . T C 2789 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1921;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.62;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2822,327,0 chrIII 95803 . T G 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=7.131;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-0.579;QD=18.64;ReadPosRankSum=2.414;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2606,306,0 chrIII 95815 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9174;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.11;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2767,330,0 chrIII 95906 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3605,405,0 chrIII 95967 . G T 2642 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.14;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2675,318,0 chrIII 96019 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.74;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3543,411,0 chrIII 96055 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.01;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.62;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4365,513,0 chrIII 96352 . C T 5240.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.4898;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.74;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5240,620,0 chrIII 96520 . C A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.8437;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.67;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4715,546,0 chrIII 96581 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=3.961;HaplotypeScore=15.5639;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.947;QD=20.05;ReadPosRankSum=1.688;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:4692,549,0 chrIII 96793 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.33;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3604,405,0 chrIII 96799 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.88;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3339,393,0 chrIII 96805 . A T 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=171;Dels=0.00;FS=2.843;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.527;QD=19.74;ReadPosRankSum=2.406;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3376,387,0 chrIII 97161 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6385;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.23;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3333,381,0 chrIII 97369 . A G 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=137;Dels=0.00;FS=5.625;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.566;QD=19.49;ReadPosRankSum=2.919;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2703,321,0 chrIII 97552 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.429;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=14.9725;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.673;QD=21.97;ReadPosRankSum=0.992;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2604,300,0 chrIII 97606 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.375;QD=21.89;ReadPosRankSum=1.696;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2156,246,0 chrIII 97645 . A T 1981 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.53;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2014,237,0 chrIII 97684 . A G 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=2.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.973;QD=19.97;ReadPosRankSum=2.360;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2230,261,0 chrIII 97696 . A G 2153 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.89;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2186,258,0 chrIII 98134 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.880;QD=22.30;ReadPosRankSum=1.714;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4192,486,0 chrIII 98532 . C T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.3480;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.22;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3565,420,0 chrIII 99025 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2607,309,0 chrIII 99107 . G T 2635 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.11;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2668,306,0 chrIII 99163 . T C 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.044;QD=21.43;ReadPosRankSum=1.674;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2583,309,0 chrIII 99209 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=164;Dels=0.00;FS=7.307;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.536;QD=22.02;ReadPosRankSum=2.420;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3612,417,0 chrIII 99380 . A C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.358;QD=21.54;ReadPosRankSum=1.713;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3984,465,0 chrIII 99392 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.35;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3737,423,0 chrIII 99481 . T C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=149;Dels=0.00;FS=7.261;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.045;QD=19.00;ReadPosRankSum=2.399;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:2864,347,0 chrIII 99547 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.31;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3525,411,0 chrIII 99585 . G T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8622;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.66;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3829,441,0 chrIII 99743 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2768,318,0 chrIII 99868 . T A 2577 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2610,297,0 chrIII 100295 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.3937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2049,243,0 chrIII 100585 . A G 2660 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.13;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2693,312,0 chrIII 101152 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.10;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1995,228,0 chrIII 101527 . C A 2980 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7959;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.55;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3013,360,0 chrIII 101597 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=3.037;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.631;QD=20.62;ReadPosRankSum=2.416;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3085,369,0 chrIII 101758 . G C 2270 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.02;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2303,278,0 chrIII 101813 . T G 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=6.435;HaplotypeScore=5.6678;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.457;QD=19.53;ReadPosRankSum=1.693;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1752,210,0 chrIII 102360 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3697,455,0 chrIII 102398 . C T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.4867;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.21;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4976,570,0 chrIII 102477 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.62;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3845,432,0 chrIII 102669 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.88;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3379,399,0 chrIII 102819 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.99;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3055,345,0 chrIII 102885 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.353;HaplotypeScore=9.9387;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.012;QD=22.41;ReadPosRankSum=-1.254;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3272,353,0 chrIII 102912 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.19;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3708,443,0 chrIII 103168 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.7312;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.19;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3776,435,0 chrIII 103499 . C T 4789.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.6245;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.48;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4789,555,0 chrIII 103593 . A G 3091 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.17;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3124,386,0 chrIII 103649 . T C 3707.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5949;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.59;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3707,432,0 chrIII 103813 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=20.1722;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.79;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4450,516,0 chrIII 103937 . G A 4680.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.43;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:4680,566,0 chrIII 103955 . G A 5005.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.40;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:5005,570,0 chrIII 103983 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=23.5376;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=15.56;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,301:306:99:4762,581,0 chrIII 104056 . C G 6392.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=21.3744;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.89;SB=-3.691e+03 GT:AD:DP:GQ:PL 1/1:0,304:306:99:6392,743,0 chrIII 104135 . C A 5806.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=17.0511;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.95;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,287:291:99:5806,663,0 chrIII 104476 . G A 566 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.03;FS=0.000;HaplotypeScore=160.7342;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=2.46;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:69:599,69,0 chrIII 104980 . G C 5001.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.6245;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.54;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5001,582,0 chrIII 105047 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=27.7481;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.86;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4269,486,0 chrIII 105155 . C T 6202.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=14.3570;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.15;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6202,711,0 chrIII 105234 . G A 6700.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=27.9606;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.11;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:6700,777,0 chrIII 105510 . C T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=25.3755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.96;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:5121,626,0 chrIII 105662 . T C 527 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.453;DP=388;Dels=0.00;FS=111.822;HaplotypeScore=592.5919;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=-2.898;QD=1.36;ReadPosRankSum=-4.911;SB=3.00 GT:AD:DP:GQ:PL 1/1:340,44:388:69:560,69,0 chrIII 105854 . G T 10360.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=494;Dels=0.00;FS=0.000;HaplotypeScore=30.8602;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.264;QD=20.97;ReadPosRankSum=1.675;SB=-5.843e+03 GT:AD:DP:GQ:PL 1/1:1,491:494:99:10360,1178,0 chrIII 106297 . G T 5557.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=14.4843;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=18.22;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,304:305:99:5557,674,0 chrIII 106308 . T C 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=288;Dels=0.00;FS=4.493;HaplotypeScore=8.5373;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=-0.247;QD=17.05;ReadPosRankSum=1.708;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:4911,596,0 chrIII 106326 . A G 4744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.9233;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.344;QD=17.25;ReadPosRankSum=1.719;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,271:275:99:4744,575,0 chrIII 106362 . G C 3987.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=16.01;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:3987,488,0 chrIII 106369 . C G 4091.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.84;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4091,486,0 chrIII 106443 . G A 4976.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=16.3746;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.39;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:4976,579,0 chrIII 106497 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=20.3539;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.88;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:4645,563,0 chrIII 107067 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.8056;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.051;QD=23.75;ReadPosRankSum=1.712;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4013,468,0 chrIII 107671 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.03;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2658,306,0 chrIII 108095 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.6543;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.90;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3636,443,0 chrIII 108225 . G A 5946.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=22.5465;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.82;SB=-3.592e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:5946,678,0 chrIII 108227 . T A 5373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=315;Dels=0.00;FS=5.959;HaplotypeScore=20.0682;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.498;QD=17.06;ReadPosRankSum=0.997;SB=-3.491e+03 GT:AD:DP:GQ:PL 1/1:3,312:315:99:5373,647,0 chrIII 108293 . A G 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=292;Dels=0.00;FS=3.194;HaplotypeScore=15.9134;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.382;QD=18.48;ReadPosRankSum=1.720;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:1,289:292:99:5397,624,0 chrIII 108503 . T C 4991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=256;Dels=0.00;FS=3.479;HaplotypeScore=15.0855;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.846;QD=19.50;ReadPosRankSum=1.637;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:4991,611,0 chrIII 108665 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.2708;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.11;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3358,398,0 chrIII 108677 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.8868;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.19;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3271,372,0 chrIII 108790 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.83;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2076,240,0 chrIII 108793 . A G 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.072;QD=19.37;ReadPosRankSum=1.666;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2067,246,0 chrIII 108855 . T C 1321 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=16.72;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1354,168,0 chrIII 109046 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.90;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2662,306,0 chrIII 109290 . A C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.203;QD=19.39;ReadPosRankSum=1.684;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2844,344,0 chrIII 109320 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6311;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.151;QD=21.76;ReadPosRankSum=1.710;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3460,399,0 chrIII 109596 . T G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=169;Dels=0.00;FS=10.193;HaplotypeScore=7.3089;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.596;QD=20.53;ReadPosRankSum=2.332;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3470,405,0 chrIII 109704 . G C 2975 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.72;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3008,348,0 chrIII 109776 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.10;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2482,285,0 chrIII 111404 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4772;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.00;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2217,252,0 chrIII 111458 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2234;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.64;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3257,378,0 chrIII 111618 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.0511;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.60;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2258,258,0 chrIII 111695 . T G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8033;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.62;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3619,420,0 chrIII 112101 . C A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.00;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3253,378,0 chrIII 112582 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.38;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2383,270,0 chrIII 112707 . A C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=4.441;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.213;QD=22.43;ReadPosRankSum=1.702;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2612,309,0 chrIII 112745 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.02;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2322,270,0 chrIII 112749 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=15.41;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2036,243,0 chrIII 112760 . A G 2155 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=16.84;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2188,252,0 chrIII 112906 . T A 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=3.928;HaplotypeScore=16.8616;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.567;QD=20.39;ReadPosRankSum=1.705;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2622,303,0 chrIII 112965 . C A 2464 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=21.81;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2497,288,0 chrIII 113059 . C A 2242 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.20;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2275,264,0 chrIII 113166 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.88;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2550,294,0 chrIII 113279 . T A 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.510;QD=22.14;ReadPosRankSum=2.375;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2225,258,0 chrIII 113543 . A G 2607 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.28;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2640,300,0 chrIII 113605 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.88;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3340,390,0 chrIII 113636 . A C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.97;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3652,440,0 chrIII 113697 . C A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=22.48;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3710,443,0 chrIII 113756 . A G 3122 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.95;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3155,366,0 chrIII 113781 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.56;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3372,384,0 chrIII 113811 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.99;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3980,456,0 chrIII 113902 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=18.43;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2540,294,0 chrIII 113907 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=16.62;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2293,270,0 chrIII 113914 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=17.98;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2370,276,0 chrIII 113921 . A T 2004 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=15.53;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2037,246,0 chrIII 113952 . C G 2004 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.78;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2037,234,0 chrIII 114025 . G C 2584 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.67;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2617,303,0 chrIII 114169 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=21.13;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2590,309,0 chrIII 114184 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=87.9436;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=21.31;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2185,261,0 chrIII 114243 . T C 701 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=15.58;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:84:734,84,0 chrIII 114262 . G A 608 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=15.59;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:78:641,78,0 chrIII 114298 . A T 1355 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=19.08;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1388,156,0 chrIII 114307 . A G 1417 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=18.64;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1450,168,0 chrIII 114354 . A G 1405 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.054;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;MQRankSum=-0.776;QD=17.35;ReadPosRankSum=1.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1438,165,0 chrIII 114395 . G A 419 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=19.95;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:452,51,0 chrIII 114397 . T A 417 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=19.86;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:450,51,0 chrIII 114465 . T G 42.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=10.74;SB=-4.821e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:75,9,0 chrIII 114485 . A T 152.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=16.90;SB=-2.694e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:185,21,0 chrIII 114620 . T C 1322 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.04;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1355,159,0 chrIII 114644 . A G 1091 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.39;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1124,129,0 chrIII 114679 . G C 808 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.36;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:841,99,0 chrIII 114698 . A C 754 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.71;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:787,90,0 chrIII 114714 . C T 968 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.89;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1001,111,0 chrIII 114728 . C T 1028 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=14.08;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1061,120,0 chrIII 114762 . T C 1767 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1521;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.22;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1800,213,0 chrIII 114986 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.39;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2146,258,0 chrIII 115127 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3009,354,0 chrIII 115183 . T C 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.185;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.505;QD=21.31;ReadPosRankSum=1.705;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2740,318,0 chrIII 115351 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.47;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2481,288,0 chrIII 115547 . G A 2210 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=17.82;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2243,270,0 chrIII 115553 . A G 2119 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=18.75;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2152,252,0 chrIII 115554 . T C 2073 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=18.51;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2106,246,0 chrIII 115623 . T C 2795 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.34;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2828,324,0 chrIII 115736 . A T 2425 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.21;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2458,294,0 chrIII 115751 . T C 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=125;Dels=0.00;FS=8.485;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.307;QD=21.19;ReadPosRankSum=2.410;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2682,312,0 chrIII 115829 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.96;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1703,201,0 chrIII 115839 . G T 1670 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=18.15;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1703,195,0 chrIII 115896 . T C 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=2.988;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.244;QD=18.21;ReadPosRankSum=2.398;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1781,207,0 chrIII 116011 . G T 2715 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.90;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2748,318,0 chrIII 116224 . T G 3364.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.6321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.43;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3364,393,0 chrIII 116382 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.28;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3283,372,0 chrIII 116479 . A C 3546.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.73;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3546,414,0 chrIII 116508 . T G 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=169;Dels=0.00;FS=2.997;HaplotypeScore=11.4520;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.929;QD=21.04;ReadPosRankSum=2.420;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3556,417,0 chrIII 116641 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2045,237,0 chrIII 116887 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1674,189,0 chrIII 116946 . A G 1115 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1148,135,0 chrIII 116980 . A T 1291 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1324,159,0 chrIII 117035 . G C 2492 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2525,294,0 chrIII 117295 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.16;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2403,276,0 chrIII 117476 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.13;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2948,342,0 chrIII 117992 . C T 4697.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.55;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4697,540,0 chrIII 118354 . T A 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.133;QD=23.30;ReadPosRankSum=1.703;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2806,318,0 chrIII 118412 . C G 2386 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4437;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2419,296,0 chrIII 118719 . A G 2601 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2634,303,0 chrIII 119105 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=4.260;HaplotypeScore=11.9892;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.601;QD=20.63;ReadPosRankSum=1.636;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3024,371,0 chrIII 119474 . A C 811 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.79;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:844,102,0 chrIII 119587 . A G 1417 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.49;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1450,168,0 chrIII 119638 . T A 2388 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.18;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2421,282,0 chrIII 119779 . T A 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=3.118;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.253;QD=21.98;ReadPosRankSum=1.648;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2736,309,0 chrIII 120114 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.90;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3170,372,0 chrIII 120133 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.57;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3152,375,0 chrIII 120341 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=17.18;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2472,285,0 chrIII 120342 . T C 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.741;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.342;QD=15.92;ReadPosRankSum=1.708;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2310,279,0 chrIII 121150 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.694;QD=21.10;ReadPosRankSum=1.676;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3903,459,0 chrIII 121210 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.35;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3561,414,0 chrIII 121483 . T C 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.0385;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.012;QD=21.56;ReadPosRankSum=1.715;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4462,539,0 chrIII 121843 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=173;Dels=0.00;FS=3.034;HaplotypeScore=12.7291;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.007;QD=20.72;ReadPosRankSum=2.407;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3585,417,0 chrIII 122116 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.25;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3030,351,0 chrIII 122182 . G T 2253 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.42;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2286,258,0 chrIII 122194 . A G 2238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.881;QD=18.97;ReadPosRankSum=1.644;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2271,264,0 chrIII 122386 . G A 2528 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.32;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2561,306,0 chrIII 122393 . T C 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.212;QD=18.49;ReadPosRankSum=1.707;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2658,315,0 chrIII 122563 . C G 4421.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.4589;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.64;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4421,510,0 chrIII 122867 . G C 3432.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.19;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3432,396,0 chrIII 123163 . T G 2735 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.54;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2768,338,0 chrIII 123248 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.50;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3997,462,0 chrIII 124047 . T G 4299.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=21.71;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4299,498,0 chrIII 124337 . A G 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=0;MQRankSum=1.026;QD=6.19;ReadPosRankSum=1.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,2:4:6:56,6,0 chrIII 124357 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrIII 124458 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrIII 124461 . C A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrIII 124465 . A T 147.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=13.37;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,10:11:21:180,21,0 chrIII 124665 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=22.95;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2971,336,0 chrIII 124732 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.68;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2981,345,0 chrIII 124999 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.36;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2746,327,0 chrIII 125134 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=137;Dels=0.00;FS=3.867;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.465;QD=21.95;ReadPosRankSum=1.680;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3040,345,0 chrIII 125212 . A C 2573 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.62;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2606,303,0 chrIII 125229 . C G 2494 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.61;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2527,300,0 chrIII 125432 . G T 3070 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.09;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3103,351,0 chrIII 125976 . T C 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.627;QD=22.33;ReadPosRankSum=1.706;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2980,348,0 chrIII 126446 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=105;Dels=0.00;FS=3.095;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=0.733;QD=20.68;ReadPosRankSum=1.632;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2204,258,0 chrIII 126606 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=4.210;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.633;QD=20.65;ReadPosRankSum=1.708;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3027,371,0 chrIII 126802 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.83;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2970,336,0 chrIII 126856 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;DP=137;Dels=0.00;FS=3.379;HaplotypeScore=5.0601;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.962;QD=19.22;ReadPosRankSum=1.322;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2666,303,0 chrIII 126871 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.627;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.484;QD=18.71;ReadPosRankSum=1.707;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2577,291,0 chrIII 126876 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.012;DP=141;Dels=0.00;FS=4.010;HaplotypeScore=6.9903;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=1.585;QD=17.81;ReadPosRankSum=0.356;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2544,300,0 chrIII 126920 . A G 2944 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9791;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.76;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2977,342,0 chrIII 127056 . G C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.329;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.030;QD=19.89;ReadPosRankSum=-1.052;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3235,368,0 chrIII 127303 . A T 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=175;Dels=0.00;FS=6.729;HaplotypeScore=12.8690;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.115;QD=23.65;ReadPosRankSum=2.393;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4139,477,0 chrIII 127464 . A G 2499 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.82;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2532,294,0 chrIII 128224 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.85;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1601,189,0 chrIII 128266 . T C 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.554;QD=18.60;ReadPosRankSum=1.663;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:963,114,0 chrIII 128282 . A G 1105 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.05;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1138,132,0 chrIII 128488 . A C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=5.271;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.556;QD=22.46;ReadPosRankSum=1.682;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3132,360,0 chrIII 129310 . T G 3533.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.03;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3533,411,0 chrIII 130263 . T C 2649 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.22;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2682,326,0 chrIII 130268 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.63;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2694,306,0 chrIII 130317 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.94;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1809,207,0 chrIII 130325 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.74;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1532,180,0 chrIII 130372 . G A 1079 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.10;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1112,129,0 chrIII 130406 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.28;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1286,153,0 chrIII 130829 . A G 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=134;Dels=0.00;FS=8.795;HaplotypeScore=10.1562;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.963;QD=21.56;ReadPosRankSum=2.376;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2922,359,0 chrIII 130883 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2439,294,0 chrIII 130940 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=140;Dels=0.00;FS=2.639;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.027;QD=19.94;ReadPosRankSum=2.379;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2825,339,0 chrIII 131027 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.6105;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.19;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3084,371,0 chrIII 131371 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=3.483;HaplotypeScore=5.8906;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.031;QD=21.53;ReadPosRankSum=1.627;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3553,411,0 chrIII 131513 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.50;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3348,396,0 chrIII 131519 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.92;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3425,396,0 chrIII 131572 . A T 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.110;DP=166;Dels=0.00;FS=8.774;HaplotypeScore=133.0316;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-1.965;QD=15.38;ReadPosRankSum=3.311;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:2586,306,0 chrIII 131585 . T A 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=129.3343;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.530;QD=17.69;ReadPosRankSum=1.638;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2633,303,0 chrIII 131861 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6160;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.61;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3284,384,0 chrIII 131983 . T C 2195 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2228,255,0 chrIII 132286 . C T 4253.01 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.6770;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4253,501,0 chrIII 133238 . T C 3149 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.2593;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=20.06;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3182,369,0 chrIII 133253 . A T 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=145;Dels=0.00;FS=5.394;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.785;QD=20.00;ReadPosRankSum=2.952;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2933,336,0 chrIII 133383 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=17.8591;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.59;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2766,321,0 chrIII 133467 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.84;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2534,303,0 chrIII 133568 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.55;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2008,240,0 chrIII 133715 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2635,309,0 chrIII 133913 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.16;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2911,350,0 chrIII 134468 . C A 2460 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2493,297,0 chrIII 135179 . G T 2939 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.93;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2972,342,0 chrIII 135317 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=156;Dels=0.00;FS=10.273;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.045;QD=20.96;ReadPosRankSum=2.877;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3270,381,0 chrIII 135488 . C G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1320;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.02;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3406,399,0 chrIII 135665 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.59;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:2873,336,0 chrIII 135695 . G T 2438 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=17.93;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2471,297,0 chrIII 135767 . C A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.91;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3528,411,0 chrIII 136159 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.5703;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2821,336,0 chrIII 136789 . T C 2779 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.06;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2812,324,0 chrIII 136852 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.27;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1671,192,0 chrIII 137068 . A G 2559 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.69;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2592,297,0 chrIII 137256 . A G 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.093;QD=19.70;ReadPosRankSum=1.708;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2810,324,0 chrIII 137311 . G T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=13.8334;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.44;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3519,405,0 chrIII 138345 . G A 6351.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=14.3107;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.31;SB=-3.231e+03 GT:AD:DP:GQ:PL 1/1:0,296:298:99:6351,735,0 chrIII 139840 . C G 2113 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5351;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.04;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2146,258,0 chrIII 139934 . T C 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=3.522;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.207;QD=21.51;ReadPosRankSum=1.662;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2184,267,0 chrIII 139959 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.37;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2090,246,0 chrIII 140025 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.55;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1851,213,0 chrIII 140030 . T C 1765 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=17.48;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1798,207,0 chrIII 140121 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.54;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2580,306,0 chrIII 140338 . G T 2907 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.02;FS=0.000;HaplotypeScore=9.3572;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.94;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2940,336,0 chrIII 140422 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.39;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3448,396,0 chrIII 140478 . G T 2937 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6454;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.12;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2970,339,0 chrIII 140985 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.37;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2222,261,0 chrIII 141799 . T A 2417 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.7619;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.97;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2450,285,0 chrIII 142239 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2510,300,0 chrIII 142587 . T C 843 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.16;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:876,102,0 chrIII 142805 . C A 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=2.67;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,8:26:12:102,12,0 chrIII 142808 . T A 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=23;Dels=0.00;FS=6.628;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.230;QD=1.56;ReadPosRankSum=-3.093;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:18,5:23:9:68,9,0 chrIII 142810 . T A 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.569;DP=24;Dels=0.00;FS=6.812;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.569;QD=1.50;ReadPosRankSum=-3.057;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:19,5:24:9:68,9,0 chrIII 142850 . G T 38.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=2.05;SB=-4.498e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:71,9,0 chrIII 142857 . C G 37.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=2.23;SB=-4.898e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:70,9,0 chrIII 142886 . C A 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=5.85;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:73,9,0 chrIII 142889 . A G 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=0.736;QD=6.50;ReadPosRankSum=0.736;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:9:71,9,0 chrIII 142894 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.59;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrIII 142895 . C A 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.19;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:73,9,0 chrIII 142902 . C T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9601;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.37;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrIII 142910 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=8.8264;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=3.66;SB=-2.791e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrIII 142921 . G A 85.26 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=4.06;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:15:118,15,0 chrIII 142922 . T A 143.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=-0.630;QD=6.50;ReadPosRankSum=1.576;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:1,21:22:21:176,21,0 chrIII 142955 . C T 660 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=2;QD=8.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,75:77:81:693,81,0 chrIII 142958 . C G 679 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=2;QD=8.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,81:83:81:712,81,0 chrIII 142966 . T A 712 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=8.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,83:85:87:745,87,0 chrIII 142967 . C T 711 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=8.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,83:85:87:744,87,0 chrIII 142981 . A T 734 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=8.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,83:85:90:767,90,0 chrIII 142982 . G A 681 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=8.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,83:85:87:714,87,0 chrIII 142983 . C T 717 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=8.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,83:85:87:750,87,0 chrIII 142991 . A C 695 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=2;QD=7.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,86:88:84:728,84,0 chrIII 142993 . C T 687 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=2;QD=7.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,86:88:84:720,84,0 chrIII 142996 . A G 704 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=2;QD=8.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,86:88:84:737,84,0 chrIII 142997 . T C 629 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=70.5551;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=2;QD=7.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,86:88:81:662,81,0 chrIII 143004 . A T 546 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=70.5551;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=2;QD=6.82;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,78:80:69:579,69,0 chrIII 143030 . T C 137.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=1;QD=4.90;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:170,21,0 chrIII 143032 . G A 134.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=1;QD=4.79;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:167,21,0 chrIII 143033 . A G 162.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=1;QD=5.79;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:195,21,0 chrIII 143037 . T C 145.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=1;QD=5.18;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:178,21,0 chrIII 143038 . A G 141.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=1;QD=5.04;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:174,21,0 chrIII 143042 . C A 155.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=1;QD=3.88;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:21:188,21,0 chrIII 143045 . T C 140.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=1;MQRankSum=-0.248;QD=3.26;ReadPosRankSum=1.650;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,42:43:21:173,21,0 chrIII 143051 . G A 113.13 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=1;QD=2.90;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,39:39:18:146,18,0 chrIII 143052 . A G 120.13 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=1;QD=3.00;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:18:153,18,0 chrIII 143057 . C T 169.03 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=1;QD=3.60;SB=-4.704e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:24:202,24,0 chrIII 143064 . G T 251 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=1;QD=5.34;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:33:284,33,0 chrIII 143131 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=3.014;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;MQRankSum=-1.351;QD=19.12;ReadPosRankSum=2.406;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2175,261,0 chrIII 143355 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.59;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2360,270,0 chrIII 143573 . G A 2074 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.19;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2107,252,0 chrIII 143575 . C G 2115 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.72;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2148,249,0 chrIII 143576 . A G 2211 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.763;DP=113;Dels=0.00;FS=16.894;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.956;QD=19.57;ReadPosRankSum=3.581;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:5,108:113:99:2244,261,0 chrIII 143625 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2742;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.08;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2926,342,0 chrIII 143715 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.673;QD=22.25;ReadPosRankSum=1.675;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2748,321,0 chrIII 143860 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.97;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2888,347,0 chrIII 145017 . C T 4869.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.1761;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=20.90;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4869,561,0 chrIII 145055 . A G 6316.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=16.0958;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=21.12;SB=-3.560e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:6316,720,0 chrIII 145673 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4242,503,0 chrIII 145735 . T C 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=222;Dels=0.00;FS=3.021;HaplotypeScore=17.1179;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.162;QD=21.54;ReadPosRankSum=2.405;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:4782,584,0 chrIII 145988 . G A 4849.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.08;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4849,561,0 chrIII 146289 . G T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.7645;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.08;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3942,450,0 chrIII 146420 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=3.916;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.325;QD=21.44;ReadPosRankSum=1.691;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3667,420,0 chrIII 146470 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.20;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3774,435,0 chrIII 146876 . T G 2386 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.22;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2419,279,0 chrIII 146949 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2915,333,0 chrIII 147587 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=3.070;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.356;QD=22.18;ReadPosRankSum=1.637;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3282,398,0 chrIII 148007 . A T 2001 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.52;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2034,231,0 chrIII 148030 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=17.97;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1830,227,0 chrIII 148041 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.45;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1896,219,0 chrIII 148049 . T C 1750 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.50;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1783,213,0 chrIII 148271 . T C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.9993;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.268;QD=21.51;ReadPosRankSum=1.589;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2141,255,0 chrIII 148953 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.03;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2390,270,0 chrIII 148979 . G T 1852 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=17.98;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1885,216,0 chrIII 148987 . A T 1795 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=16.47;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1828,219,0 chrIII 148991 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=15.72;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:1762,210,0 chrIII 149037 . A T 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=4.641;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.912;QD=18.57;ReadPosRankSum=1.626;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2466,288,0 chrIII 149347 . A G 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.8314;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;MQRankSum=-1.347;QD=19.29;ReadPosRankSum=1.689;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1615,189,0 chrIII 149358 . G C 1732 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.7214;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=20.87;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1765,201,0 chrIII 149740 . G A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=1;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,25:26:6:48,6,0 chrIII 149741 . T C 10.52 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DP=28;Dels=0.00;FS=11.303;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=1;MQRankSum=-0.787;QD=0.38;ReadPosRankSum=2.268;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:3,25:28:13:40,0,13 chrIII 149746 . A C 10.45 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.677;DP=62;Dels=0.00;FS=9.005;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=29.82;MQ0=1;MQRankSum=-1.216;QD=0.17;ReadPosRankSum=6.497;SB=-4.080e-02 GT:AD:DP:GQ:PL 0/1:35,26:62:18:40,0,18 chrIII 149755 . C T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DP=67;Dels=0.00;FS=13.732;HaplotypeScore=23.1079;MLEAC=1;MLEAF=0.500;MQ=33.15;MQ0=1;MQRankSum=-1.006;QD=0.49;ReadPosRankSum=1.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,24:67:63:63,0,199 chrIII 149765 . C T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.150;DP=64;Dels=0.00;FS=9.920;HaplotypeScore=3.3493;MLEAC=1;MLEAF=0.500;MQ=35.22;MQ0=1;MQRankSum=-1.397;QD=0.24;ReadPosRankSum=4.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,16:64:45:45,0,317 chrIII 149768 . C A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.023;DP=67;Dels=0.00;FS=10.120;HaplotypeScore=3.4272;MLEAC=1;MLEAF=0.500;MQ=36.23;MQ0=1;MQRankSum=-0.643;QD=0.18;ReadPosRankSum=3.822;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,16:67:42:42,0,353 chrIII 149831 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=5.8652;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=1;QD=21.07;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1529,180,0 chrIII 149890 . T A 1315 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=60.1060;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=18.01;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1348,156,0 chrIII 149901 . A G 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.844;HaplotypeScore=52.6898;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;MQRankSum=0.082;QD=17.24;ReadPosRankSum=1.512;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1119,138,0 chrIII 150006 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.33;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1697,192,0 chrIII 150045 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.80;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1690,198,0 chrIII 150129 . T C 1115 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=18.90;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1148,141,0 chrIII 150161 . G T 842 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.30;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:875,102,0 chrIII 150170 . C T 844 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.76;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:877,99,0 chrIII 150179 . T A 811 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.63;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:844,99,0 chrIII 150203 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=14.40;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:724,87,0 chrIII 150300 . G A 808 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.96;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:841,99,0 chrIII 150321 . T C 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.431;QD=17.13;ReadPosRankSum=1.582;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:96:821,96,0 chrIII 150478 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.70;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1486,174,0 chrIII 150520 . C A 1371 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.48;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1404,162,0 chrIII 150586 . A G 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=4.037;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.091;QD=21.21;ReadPosRankSum=1.687;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1645,201,0 chrIII 150619 . G T 1697 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1730,198,0 chrIII 150823 . T C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.7456;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.337;QD=21.79;ReadPosRankSum=1.702;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2561,309,0 chrIII 150868 . T A 2175 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.53;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2208,258,0 chrIII 150992 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.126;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.527;QD=22.74;ReadPosRankSum=1.709;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3456,402,0 chrIII 151161 . T G 2903 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=13.2974;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.68;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2936,336,0 chrIII 151242 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=22.30;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1795,201,0 chrIII 151259 . T C 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=4.239;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=0.828;QD=19.60;ReadPosRankSum=1.632;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1405,162,0 chrIII 151367 . T C 1058 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=18.89;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1091,138,0 chrIII 151372 . A T 1005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=36.1254;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;MQRankSum=-1.732;QD=18.61;ReadPosRankSum=1.666;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1038,126,0 chrIII 151378 . G C 1097 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=40.4454;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=19.95;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1130,129,0 chrIII 151385 . A C 905 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=19.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:938,108,0 chrIII 151391 . C T 814 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=18.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:96:847,96,0 chrIII 151509 . C T 89.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.592;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;MQRankSum=0.423;QD=6.87;ReadPosRankSum=2.451;SB=-2.126e+01 GT:AD:DP:GQ:PL 1/1:3,10:13:15:122,15,0 chrIII 151629 . G A 843 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.976;DP=59;Dels=0.00;FS=11.249;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=18;MQRankSum=2.722;QD=14.29;ReadPosRankSum=1.900;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,41:59:83:876,83,0 chrIII 151757 . C T 729 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=82;Dels=0.00;FS=10.281;HaplotypeScore=2.5572;MLEAC=2;MLEAF=1.00;MQ=26.73;MQ0=17;MQRankSum=1.233;QD=8.89;ReadPosRankSum=-0.411;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:25,54:82:37:762,37,0 chrIII 151761 . G A 743.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;DP=77;Dels=0.00;FS=14.891;HaplotypeScore=2.5572;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=11;MQRankSum=1.225;QD=9.65;ReadPosRankSum=0.903;SB=-4.941e+02 GT:AD:DP:GQ:PL 0/1:24,53:77:16:773,0,16 chrIII 151809 . T C 711 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=12.26;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:87:744,87,0 chrIII 151925 . G A 440 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=8.30;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:54:473,54,0 chrIII 152125 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.51;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2829,344,0 chrIII 152240 . A C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=129;Dels=0.00;FS=3.445;HaplotypeScore=8.0546;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.687;QD=22.10;ReadPosRankSum=1.705;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2884,330,0 chrIII 152257 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.86;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2766,330,0 chrIII 152291 . T C 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=134;Dels=0.00;FS=3.043;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.890;QD=20.97;ReadPosRankSum=2.395;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2843,330,0 chrIII 152439 . T G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.789;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.525;QD=20.21;ReadPosRankSum=1.706;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2761,327,0 chrIII 152546 . A G 2942 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.01;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2975,348,0 chrIII 152773 . A T 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=142;Dels=0.00;FS=3.015;HaplotypeScore=7.2486;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.410;QD=21.10;ReadPosRankSum=2.362;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3029,348,0 chrIII 152956 . C T 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.030;QD=17.42;ReadPosRankSum=1.135;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,115:120:99:2124,249,0 chrIII 152962 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.59;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2179,249,0 chrIII 153080 . T A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3338,381,0 chrIII 153139 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.4844;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.65;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2607,312,0 chrIII 153418 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.01;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4787,546,0 chrIII 153719 . T G 2711 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.36;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2744,330,0 chrIII 153893 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-0.902;QD=19.93;ReadPosRankSum=1.696;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1946,225,0 chrIII 153915 . G T 1515 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=19.42;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1548,177,0 chrIII 153919 . A T 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.638;QD=14.36;ReadPosRankSum=1.687;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1124,141,0 chrIII 153931 . A G 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-1.347;QD=17.38;ReadPosRankSum=1.677;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1128,138,0 chrIII 154683 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.10;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2227,267,0 chrIII 154902 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.28;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2640,315,0 chrIII 155243 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.7965;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.69;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2089,257,0 chrIII 155271 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.06;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2119,255,0 chrIII 155616 . A G 2705 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.13;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2738,324,0 chrIII 155835 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.57;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1082,123,0 chrIII 155855 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.22;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1125,129,0 chrIII 156289 . A G 5003.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=21.0948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5003,611,0 chrIII 156517 . G C 5089.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.94;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,226:232:99:5089,614,0 chrIII 156666 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.8245;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.02;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4456,519,0 chrIII 156868 . A G 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=174;Dels=0.00;FS=7.460;HaplotypeScore=8.0188;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.744;QD=22.08;ReadPosRankSum=2.407;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3842,461,0 chrIII 156960 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2455,294,0 chrIII 157171 . G C 728 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.20;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:90:761,90,0 chrIII 157443 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.54;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3531,414,0 chrIII 157485 . T C 2742 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.16;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2775,333,0 chrIII 157807 . A G 4585.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.5329;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.63;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4585,545,0 chrIII 157881 . C T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.0168;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.42;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4371,518,0 chrIII 157998 . C A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.42;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3370,402,0 chrIII 158053 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.65;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3655,434,0 chrIII 158141 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.97;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3240,366,0 chrIII 158157 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.61;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3145,363,0 chrIII 158345 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.25;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2725,312,0 chrIII 158495 . T A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.488;DP=94;Dels=0.00;FS=1.647;HaplotypeScore=77.0881;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=-0.224;QD=0.34;ReadPosRankSum=-3.844;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:88,6:94:62:62,0,149 chrIII 158627 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.86;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2919,339,0 chrIII 158956 . T C 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=4.221;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.655;QD=20.72;ReadPosRankSum=1.685;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3099,371,0 chrIII 159324 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=120;Dels=0.00;FS=8.508;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.010;QD=21.90;ReadPosRankSum=2.408;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2661,303,0 chrIII 159529 . T C 3016 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.84;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3049,351,0 chrIII 159547 . A T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.73;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3446,390,0 chrIII 159689 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.68;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3254,369,0 chrIII 160421 . T G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.335;QD=22.02;ReadPosRankSum=2.398;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3182,369,0 chrIII 160583 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5805;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3194,363,0 chrIII 160807 . G C 2426 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.86;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2459,285,0 chrIII 161320 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.98;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3735,435,0 chrIII 161337 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.63;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3755,444,0 chrIII 161633 . G T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.3020;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.52;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3755,426,0 chrIII 161726 . A T 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.699;DP=140;Dels=0.00;FS=2.576;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.404;QD=19.19;ReadPosRankSum=2.861;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2719,312,0 chrIII 161749 . G T 2914 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.27;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2947,339,0 chrIII 161785 . T C 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=3.424;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.604;QD=20.21;ReadPosRankSum=1.706;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2701,312,0 chrIII 161803 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=124;Dels=0.00;FS=3.118;HaplotypeScore=6.8596;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.169;QD=19.98;ReadPosRankSum=1.704;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2510,291,0 chrIII 162396 . G C 250 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.86;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:283,33,0 chrIII 162640 . T G 1916 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.02;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1949,239,0 chrIII 162890 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=159;Dels=0.02;FS=3.123;HaplotypeScore=5.0650;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.643;QD=18.60;ReadPosRankSum=1.643;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2990,365,0 chrIII 162909 . A T 2832 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.80;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2865,333,0 chrIII 163237 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.840;DP=126;Dels=0.00;FS=5.716;HaplotypeScore=27.8208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.768;QD=20.56;ReadPosRankSum=0.992;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2623,287,0 chrIII 163290 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2164,246,0 chrIII 163645 . T G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.9358;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.407;QD=19.24;ReadPosRankSum=1.662;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2938,359,0 chrIII 163816 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.5253;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.51;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3511,402,0 chrIII 164047 . T A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.16;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3737,449,0 chrIII 164068 . G A 4681.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.6652;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.09;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4681,531,0 chrIII 164276 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.39;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3898,470,0 chrIII 164651 . T C 4787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.415;QD=21.37;ReadPosRankSum=1.669;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,220:224:99:4787,575,0 chrIII 164696 . C T 5612.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.6318;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.75;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5612,645,0 chrIII 165010 . A C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.210;QD=21.32;ReadPosRankSum=1.649;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3581,414,0 chrIII 165283 . G A 4469.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.35;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4469,498,0 chrIII 165364 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3675,435,0 chrIII 165407 . A C 4205.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6445;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.68;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4205,498,0 chrIII 165461 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.76;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:4816,561,0 chrIII 165488 . T C 5061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=241;Dels=0.00;FS=2.837;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.963;QD=21.00;ReadPosRankSum=2.409;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5061,591,0 chrIII 166020 . T C 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=3.043;HaplotypeScore=4.4875;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.519;QD=18.81;ReadPosRankSum=2.395;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2591,317,0 chrIII 166022 . A G 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=3.5141;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-0.664;QD=20.00;ReadPosRankSum=1.680;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2733,312,0 chrIII 166247 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.69;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3367,410,0 chrIII 166262 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.32;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3074,366,0 chrIII 166340 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.41;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2265,261,0 chrIII 166382 . A T 3043 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.54;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3076,351,0 chrIII 166414 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.34;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3396,407,0 chrIII 166525 . T G 2871 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.08;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2904,336,0 chrIII 166580 . C T 2138 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.36;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2171,255,0 chrIII 166581 . A G 2124 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.777;QD=20.62;ReadPosRankSum=2.402;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2157,258,0 chrIII 166589 . G T 2250 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.83;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2283,261,0 chrIII 166874 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=19.08;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1693,201,0 chrIII 167066 . G A 1592 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=16.41;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1625,189,0 chrIII 167072 . T A 1472 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.545;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;MQRankSum=0.345;QD=16.18;ReadPosRankSum=2.790;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1505,174,0 chrIII 167074 . A T 1495 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.03;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=16.61;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1528,174,0 chrIII 167075 . C T 1489 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=16.54;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1522,171,0 chrIII 167112 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=17.04;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1277,144,0 chrIII 167138 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.37;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1357,156,0 chrIII 167218 . C G 1967 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.15;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2000,245,0 chrIII 167679 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2986,354,0 chrIII 167811 . G T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.0774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3676,420,0 chrIII 168099 . A G 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.209;QD=18.39;ReadPosRankSum=2.408;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2240,264,0 chrIII 168244 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.60;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1912,222,0 chrIII 168390 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.421;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=23.1301;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=1;MQRankSum=-0.421;QD=1.62;ReadPosRankSum=-0.922;SB=1.24 GT:AD:DP:GQ:PL 1/1:4,4:11:6:49,6,0 chrIII 168393 . G C 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=5.9397;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=1;MQRankSum=1.067;QD=3.56;ReadPosRankSum=-1.589;SB=-4.131e-03 GT:AD:DP:GQ:PL 0/1:3,6:9:38:62,0,38 chrIII 168408 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=1;QD=7.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrIII 168432 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=1;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:49,6,0 chrIII 168436 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=1;QD=7.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrIII 168599 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.5314;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=2;MQRankSum=0.742;QD=1.98;ReadPosRankSum=0.742;SB=-2.826e+01 GT:AD:DP:GQ:PL 1/1:3,6:9:6:49,6,0 chrIII 169091 . G A 662 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=18.39;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:81:695,81,0 chrIII 169332 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.22;MQ0=10;MQRankSum=0.067;QD=0.63;ReadPosRankSum=0.762;SB=1.75 GT:AD:DP:GQ:PL 1/1:11,8:19:6:43,6,0 chrIII 169333 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.86;MQ0=11;MQRankSum=0.067;QD=0.60;ReadPosRankSum=0.762;SB=2.02 GT:AD:DP:GQ:PL 1/1:12,8:20:6:43,6,0 chrIII 169484 . T C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;DP=49;Dels=0.00;FS=15.815;HaplotypeScore=7.7872;MLEAC=1;MLEAF=0.500;MQ=19.17;MQ0=15;MQRankSum=1.235;QD=0.84;ReadPosRankSum=-0.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,7:49:71:71,0,274 chrIII 169496 . T A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;DP=44;Dels=0.00;FS=15.815;HaplotypeScore=7.6857;MLEAC=1;MLEAF=0.500;MQ=20.23;MQ0=10;MQRankSum=1.363;QD=0.98;ReadPosRankSum=0.809;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,7:44:73:73,0,253 chrIII 169751 . G T 2050 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.71;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2083,249,0 chrIII 169770 . T G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;DP=111;Dels=0.00;FS=15.675;HaplotypeScore=35.7226;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=2.861;QD=19.86;ReadPosRankSum=1.499;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:5,104:111:99:2237,264,0 chrIII 169830 . A G 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DP=153;Dels=0.00;FS=10.291;HaplotypeScore=9.8119;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=2.809;QD=19.46;ReadPosRankSum=2.112;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3010,351,0 chrIII 169850 . G C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.35;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3459,405,0 chrIII 169924 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.67;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3369,410,0 chrIII 170102 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.18;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3410,396,0 chrIII 170143 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=4.801;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.753;QD=21.27;ReadPosRankSum=1.684;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3117,363,0 chrIII 170363 . T C 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.00;FS=6.978;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.338;QD=20.14;ReadPosRankSum=2.390;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1705,198,0 chrIII 170381 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.2641;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.62;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1821,216,0 chrIII 170451 . G T 2908 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=18.76;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2941,342,0 chrIII 170455 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=15.97;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2557,306,0 chrIII 170485 . A G 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=169;Dels=0.00;FS=17.128;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=-0.833;QD=15.22;ReadPosRankSum=3.408;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:2605,320,0 chrIII 170561 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2657;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.36;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2411,282,0 chrIII 170570 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.84;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2281,264,0 chrIII 170765 . A G 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=171;Dels=0.00;FS=10.369;HaplotypeScore=13.3409;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=1.592;QD=22.42;ReadPosRankSum=2.958;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:3,162:170:99:3833,444,0 chrIII 170794 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.965;HaplotypeScore=8.5918;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.573;QD=22.81;ReadPosRankSum=1.641;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3490,396,0 chrIII 170870 . A C 2374 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.46;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2407,285,0 chrIII 170886 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.20;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2587,294,0 chrIII 171207 . G T 4735.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.8803;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.44;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4735,546,0 chrIII 171564 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=17.4160;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.66;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3572,405,0 chrIII 171620 . A G 1782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.847;HaplotypeScore=2.9348;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.161;QD=18.37;ReadPosRankSum=1.339;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1815,210,0 chrIII 171621 . G A 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DP=98;Dels=0.00;FS=3.847;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.911;QD=18.55;ReadPosRankSum=1.304;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1851,210,0 chrIII 172122 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.82;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3998,479,0 chrIII 172125 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.90;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4191,483,0 chrIII 172362 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.2589;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.55;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2919,330,0 chrIII 172520 . C G 2808 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.65;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2841,330,0 chrIII 172553 . A T 2906 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=5.4558;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.02;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2939,333,0 chrIII 172647 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1873,216,0 chrIII 173037 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2777,318,0 chrIII 173565 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=17.99;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2588,300,0 chrIII 173853 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2782,335,0 chrIII 173968 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.685;DP=113;Dels=0.00;FS=5.987;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.595;QD=19.94;ReadPosRankSum=2.937;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:3,109:113:99:2286,276,0 chrIII 174733 . A G 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=196;Dels=0.00;FS=2.972;HaplotypeScore=10.6991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.472;QD=22.14;ReadPosRankSum=2.412;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4339,507,0 chrIII 174996 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.424;HaplotypeScore=17.4879;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.855;QD=20.01;ReadPosRankSum=1.327;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3115,360,0 chrIII 175038 . G C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.7837;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.72;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3584,420,0 chrIII 175096 . G A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.7195;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.81;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4246,489,0 chrIII 175122 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=17.60;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3415,393,0 chrIII 175128 . T A 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=3.354;HaplotypeScore=8.6806;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=0.659;QD=17.57;ReadPosRankSum=1.714;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3461,396,0 chrIII 176368 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.23;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2968,339,0 chrIII 176538 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2553,300,0 chrIII 176624 . T A 2035 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.20;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2068,240,0 chrIII 176637 . G A 1971 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.15;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2004,225,0 chrIII 176648 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.02;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2235,252,0 chrIII 176807 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.49;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2225,267,0 chrIII 176934 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.04;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2108,255,0 chrIII 177141 . A T 2107 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.86;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2140,249,0 chrIII 177325 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1618,189,0 chrIII 177399 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1813,216,0 chrIII 177722 . G T 6969.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.55;SB=-3.575e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:6969,801,0 chrIII 178141 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.81;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1823,213,0 chrIII 178378 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.02;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2911,333,0 chrIII 178421 . C A 2784 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.01;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2817,318,0 chrIII 178639 . A G 2070 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=16.8593;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=18.48;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2103,246,0 chrIII 178810 . A T 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.886;QD=18.91;ReadPosRankSum=1.652;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1659,201,0 chrIII 178994 . G C 2614 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.76;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2647,306,0 chrIII 179047 . A G 1991 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.89;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2024,234,0 chrIII 179049 . T A 1971 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=23.46;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2004,225,0 chrIII 179185 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.12;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3116,372,0 chrIII 179230 . A G 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.437;QD=19.73;ReadPosRankSum=1.702;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2302,264,0 chrIII 179387 . T C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=126;Dels=0.00;FS=7.570;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.244;QD=21.11;ReadPosRankSum=2.411;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2693,312,0 chrIII 179428 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=17.4865;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.35;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2819,333,0 chrIII 179888 . T G 2186 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.31;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2219,258,0 chrIII 180127 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.16;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2276,258,0 chrIII 180137 . T G 2125 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.83;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2158,252,0 chrIII 180153 . G A 2005 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.33;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2038,231,0 chrIII 180575 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.54;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2144,255,0 chrIII 180717 . A G 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=101;Dels=0.00;FS=3.033;HaplotypeScore=9.8276;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.037;QD=21.81;ReadPosRankSum=2.400;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,97:101:99:2236,264,0 chrIII 180860 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2478,288,0 chrIII 180969 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8501;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.27;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2263,267,0 chrIII 180995 . G T 2063 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.84;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2096,240,0 chrIII 181166 . C T 1153 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.61;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1186,135,0 chrIII 181373 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.48;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1319,156,0 chrIII 181465 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.41;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2059,234,0 chrIII 181625 . A G 2702 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.15;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2735,318,0 chrIII 181637 . T C 2656 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.59;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2689,324,0 chrIII 181685 . A G 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.248;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.785;QD=20.53;ReadPosRankSum=1.640;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3133,369,0 chrIII 181799 . A G 3082 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.00;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3115,360,0 chrIII 181940 . G A 2424 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2457,294,0 chrIII 182759 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.82;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3743,423,0 chrIII 182936 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.69;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3134,360,0 chrIII 182988 . T C 3041 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.88;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3074,354,0 chrIII 183385 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.21;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2721,321,0 chrIII 183571 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.38;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2342,273,0 chrIII 183635 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.79;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1421,171,0 chrIII 183706 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.39;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2205,252,0 chrIII 183819 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2205,258,0 chrIII 184133 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.126;QD=22.31;ReadPosRankSum=1.707;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3134,366,0 chrIII 184538 . T C 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.269;QD=21.45;ReadPosRankSum=1.706;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2929,336,0 chrIII 184685 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.58;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2194,252,0 chrIII 184871 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.50;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2276,258,0 chrIII 184874 . C A 2246 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.42;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2279,261,0 chrIII 184904 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.57;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2054,246,0 chrIII 184932 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=17.49;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1869,210,0 chrIII 184949 . T C 1616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.647;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.236;QD=18.36;ReadPosRankSum=1.693;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1649,198,0 chrIII 185132 . G T 1890 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.54;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1923,228,0 chrIII 185357 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.66;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3513,408,0 chrIII 185468 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.56;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3675,417,0 chrIII 185558 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.03;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3257,381,0 chrIII 185561 . G A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.17;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3472,390,0 chrIII 185836 . A C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=121;Dels=0.00;FS=8.014;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.158;QD=21.33;ReadPosRankSum=2.409;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2614,309,0 chrIII 185870 . G A 2306 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.05;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2339,264,0 chrIII 185887 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.31;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2084,243,0 chrIII 186028 . C G 2492 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.05;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2525,294,0 chrIII 186237 . T A 1690 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.12;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1723,198,0 chrIII 186530 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=187;Dels=0.00;FS=3.300;HaplotypeScore=13.8823;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.261;QD=22.19;ReadPosRankSum=1.713;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4150,477,0 chrIII 186656 . G A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4339,504,0 chrIII 186836 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=19.1066;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.12;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4187,480,0 chrIII 186911 . C A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.60;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3665,420,0 chrIII 187010 . G A 4384.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4384,507,0 chrIII 187311 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.95;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2777,315,0 chrIII 187354 . C G 3019 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.26;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3052,368,0 chrIII 187612 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.41;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2324,267,0 chrIII 187655 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.09;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3150,366,0 chrIII 187736 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2464,285,0 chrIII 187812 . A G 2381 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.65;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2414,293,0 chrIII 187853 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.61;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2986,339,0 chrIII 187932 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.38;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1485,180,0 chrIII 188202 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7124;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.70;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2237,258,0 chrIII 188418 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.90;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1983,240,0 chrIII 188564 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1664,198,0 chrIII 188702 . C G 2731 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.34;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2764,338,0 chrIII 188786 . G T 2301 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.18;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2334,276,0 chrIII 188904 . C A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.89;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3700,420,0 chrIII 188954 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.25;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3271,381,0 chrIII 188979 . G A 3026 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.10;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3059,351,0 chrIII 189025 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.40;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2481,285,0 chrIII 189040 . A C 2252 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.08;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2285,264,0 chrIII 189052 . C G 2115 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.92;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2148,252,0 chrIII 189331 . T C 2946 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.2248;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.99;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2979,351,0 chrIII 189481 . A G 4354.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4354,504,0 chrIII 189555 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0065;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.92;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4309,501,0 chrIII 189875 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.15;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3596,428,0 chrIII 189930 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.52;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3262,369,0 chrIII 190569 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.3102;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.04;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3185,369,0 chrIII 190631 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.09;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3217,375,0 chrIII 190660 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.61;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3284,384,0 chrIII 190810 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.69;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3774,438,0 chrIII 190951 . T C 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=122;Dels=0.00;FS=3.045;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.474;QD=19.63;ReadPosRankSum=2.389;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2428,291,0 chrIII 191536 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.62;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3009,348,0 chrIII 192293 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.44;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3516,396,0 chrIII 192710 . A G 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.485;DP=131;Dels=0.00;FS=6.059;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.623;QD=16.55;ReadPosRankSum=2.947;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2201,258,0 chrIII 192715 . C A 2152 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.39;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2185,246,0 chrIII 193063 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.18;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2555,300,0 chrIII 193107 . C A 2697 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2730,324,0 chrIII 193294 . A G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=3.634;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.623;QD=21.81;ReadPosRankSum=1.678;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2803,324,0 chrIII 193419 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.67;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2453,291,0 chrIII 193503 . A G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=172;Dels=0.00;FS=15.843;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.198;QD=21.15;ReadPosRankSum=3.398;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:3638,443,0 chrIII 193675 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3670,417,0 chrIII 193815 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.30;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2956,342,0 chrIII 194051 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2771;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.60;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2959,339,0 chrIII 194107 . C G 2882 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2915,336,0 chrIII 194217 . A T 1761 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.14;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1794,207,0 chrIII 194218 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=3.057;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.485;QD=18.44;ReadPosRankSum=2.188;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1785,207,0 chrIII 194465 . T C 2799 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.3756;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.94;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2832,330,0 chrIII 194544 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.683;QD=23.40;ReadPosRankSum=1.683;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3370,390,0 chrIII 194732 . C T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.17;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3409,410,0 chrIII 195038 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.71;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3245,378,0 chrIII 195050 . T C 3018 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.99;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3051,354,0 chrIII 195140 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3629,414,0 chrIII 195343 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=193;Dels=0.00;FS=2.913;HaplotypeScore=17.6637;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.799;QD=19.81;ReadPosRankSum=2.424;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:3823,444,0 chrIII 195587 . A T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.01;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4072,474,0 chrIII 196646 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.75;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2491,285,0 chrIII 196742 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.14;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2823,321,0 chrIII 197393 . A T 1783 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.26;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1816,210,0 chrIII 197401 . G C 1876 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.84;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1909,219,0 chrIII 197476 . A G 95.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DP=104;Dels=0.00;FS=0.851;HaplotypeScore=9.9865;MLEAC=1;MLEAF=0.500;MQ=41.75;MQ0=0;MQRankSum=-3.487;QD=0.91;ReadPosRankSum=-7.322;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:74,29:104:99:125,0,547 chrIII 198348 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.0994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.147;QD=21.72;ReadPosRankSum=1.714;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4084,471,0 chrIII 198596 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=20.48;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3166,375,0 chrIII 198944 . T A 7739.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=19;QD=21.26;SB=-3.775e+03 GT:AD:DP:GQ:PL 1/1:0,364:364:99:7739,900,0 chrIII 199307 . A G 1105 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.12;MQ0=48;QD=10.33;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1138,135,0 chrIII 201041 . C A 1634 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=62;QD=12.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1667,189,0 chrIII 201081 . C T 1812 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=61;QD=13.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:1845,216,0 chrIII 201125 . G C 2141 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=34;QD=15.29;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2174,255,0 chrIII 201147 . T C 2289 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=20;MQRankSum=-1.732;QD=15.79;ReadPosRankSum=1.704;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:7,138:145:99:2322,282,0 chrIII 201173 . A T 2781 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=3;QD=17.71;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2814,321,0 chrIII 201189 . A C 2376 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=15.53;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2409,279,0 chrIII 201195 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;MQRankSum=-2.178;QD=15.13;ReadPosRankSum=2.389;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:2500,297,0 chrIII 201258 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.19;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3655,426,0 chrIII 201323 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.58;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3626,429,0 chrIII 201378 . C A 3161 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=18.06;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3194,381,0 chrIII 201621 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2593,309,0 chrIII 201654 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.28;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2818,318,0 chrIII 201715 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.49;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2567,291,0 chrIII 201717 . A G 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.704;QD=18.98;ReadPosRankSum=1.705;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2463,294,0 chrIII 201978 . A G 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=2.935;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=1.840;QD=20.44;ReadPosRankSum=2.320;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2751,324,0 chrIII 202034 . T A 2189 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.39;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2222,264,0 chrIII 202056 . C A 2256 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.3698;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.80;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2289,261,0 chrIII 202304 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=130;Dels=0.00;FS=6.755;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.615;QD=22.28;ReadPosRankSum=2.393;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2930,339,0 chrIII 202355 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.89;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2966,348,0 chrIII 202470 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.89;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2042,246,0 chrIII 202488 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.084;QD=19.52;ReadPosRankSum=1.665;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2044,243,0 chrIII 202548 . T A 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.320;QD=20.14;ReadPosRankSum=1.698;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2107,243,0 chrIII 202551 . T A 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=0.686;QD=19.83;ReadPosRankSum=1.634;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2135,249,0 chrIII 202580 . T C 2099 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.78;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2132,252,0 chrIII 202704 . A G 2129 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=21.08;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2162,252,0 chrIII 202737 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.28;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2140,246,0 chrIII 202932 . C A 2940 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.85;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2973,342,0 chrIII 202939 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.89;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2858,324,0 chrIII 203124 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.695;DP=185;Dels=0.00;FS=5.339;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.172;QD=19.88;ReadPosRankSum=2.961;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:3,178:185:99:3677,423,0 chrIII 203412 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.300;QD=20.78;ReadPosRankSum=1.654;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,132:137:99:2880,339,0 chrIII 203463 . C G 3141 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=9.8365;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.28;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3174,372,0 chrIII 203567 . T C 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.430;QD=21.69;ReadPosRankSum=1.706;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2918,342,0 chrIII 203595 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.58;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2893,342,0 chrIII 203664 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0952;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.62;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3629,420,0 chrIII 204174 . T C 2318 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.27;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2351,273,0 chrIII 204507 . T A 2681 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.01;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2714,318,0 chrIII 204525 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=18.77;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2811,321,0 chrIII 204530 . A T 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=6.702;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-1.984;QD=17.61;ReadPosRankSum=2.353;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2727,321,0 chrIII 204543 . G T 2694 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.16;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2727,315,0 chrIII 204670 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.96;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3093,354,0 chrIII 204750 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.16;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3164,372,0 chrIII 205338 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.59;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2721,318,0 chrIII 205399 . A G 2798 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.75;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2831,324,0 chrIII 205454 . A T 1676 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5971;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.49;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1709,207,0 chrIII 205472 . C A 1363 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.93;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1396,162,0 chrIII 205512 . G C 1367 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.75;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1400,159,0 chrIII 205619 . A G 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.082;QD=18.78;ReadPosRankSum=2.778;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:3,47:50:99:972,117,0 chrIII 205637 . C T 792 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=20.31;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:825,96,0 chrIII 205673 . G C 635 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=58.6013;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=17.64;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:668,78,0 chrIII 205701 . T A 546 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.61;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:579,66,0 chrIII 205742 . A T 369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=3.388;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;MQRankSum=-0.578;QD=15.37;ReadPosRankSum=1.589;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:48:402,48,0 chrIII 205779 . T A 282 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=10.44;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:36:315,36,0 chrIII 205780 . G A 286 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=10.59;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:36:319,36,0 chrIII 205806 . A G 161.03 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=5.96;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:24:194,24,0 chrIII 205811 . T C 169.03 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=6.26;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:24:202,24,0 chrIII 205824 . A C 263 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=8.77;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:36:296,36,0 chrIII 205857 . G C 263 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=14.61;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:36:296,36,0 chrIII 205870 . A T 384 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=19.20;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:417,51,0 chrIII 205886 . T G 350 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=20.59;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:45:383,45,0 chrIII 206083 . A T 44.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=7.50;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:77,9,0 chrIII 206100 . C A 116.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=9.68;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,11:12:18:149,18,0 chrIII 206171 . G T 1895 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1928,219,0 chrIII 206221 . G C 1968 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2001,231,0 chrIII 206226 . C T 1904 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1937,225,0 chrIII 206856 . T C 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.928;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.928;QD=20.15;ReadPosRankSum=2.392;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1746,207,0 chrIII 207086 . G C 3980.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.75;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3980,453,0 chrIII 207294 . C A 4626.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.13;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4626,528,0 chrIII 207341 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.64;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3985,465,0 chrIII 207459 . C G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=18.19;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3583,426,0 chrIII 207528 . G A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.61;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3297,381,0 chrIII 207534 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1209;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.00;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3073,363,0 chrIII 207705 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.27;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3474,408,0 chrIII 207999 . C G 2873 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=147.6862;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.31;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2906,347,0 chrIII 208072 . C G 2924 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.99;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2957,345,0 chrIII 208234 . A G 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=4.260;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.571;QD=22.16;ReadPosRankSum=1.712;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3900,450,0 chrIII 208672 . T C 4153.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.09;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4153,480,0 chrIII 208702 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.35;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3715,429,0 chrIII 208954 . T A 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=224;Dels=0.00;FS=5.234;HaplotypeScore=20.1865;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.476;QD=17.99;ReadPosRankSum=3.308;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:4,217:224:99:4029,471,0 chrIII 209143 . A G 5789.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=19.2357;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.53;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:5789,677,0 chrIII 209248 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=17.1153;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=-0.516;QD=15.02;ReadPosRankSum=1.715;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3173,380,0 chrIII 209260 . C G 2992 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=13.79;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:3025,368,0 chrIII 209265 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=14.28;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:3246,375,0 chrIII 209321 . T C 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=251;Dels=0.00;FS=3.954;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.117;QD=18.24;ReadPosRankSum=1.691;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:4577,534,0 chrIII 209380 . T A 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=213;Dels=0.00;FS=8.638;HaplotypeScore=28.0589;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.824;QD=17.85;ReadPosRankSum=2.356;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:3801,435,0 chrIII 209464 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=3.034;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.830;QD=21.43;ReadPosRankSum=2.397;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4028,485,0 chrIII 209617 . T G 2378 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.9237;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.33;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2411,276,0 chrIII 209634 . T C 2289 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.07;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2322,267,0 chrIII 209648 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.844;QD=18.21;ReadPosRankSum=1.703;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2163,252,0 chrIII 209687 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=16.93;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1861,219,0 chrIII 209716 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.86;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1749,201,0 chrIII 209805 . A G 557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=36.0256;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.080;QD=6.40;ReadPosRankSum=-0.027;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:10,77:87:72:590,72,0 chrIII 209856 . T C 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.122;QD=21.22;ReadPosRankSum=1.702;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2473,300,0 chrIII 209941 . G C 4094.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.6978;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.55;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4094,477,0 chrIII 210192 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=228;Dels=0.00;FS=7.107;HaplotypeScore=27.5662;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.450;QD=18.58;ReadPosRankSum=2.417;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,224:228:99:4236,498,0 chrIII 210441 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.77;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3381,387,0 chrIII 210469 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=361.9071;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.76;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2997,342,0 chrIII 210635 . A G 2093 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.69;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2126,246,0 chrIII 210642 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.90;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1966,237,0 chrIII 210955 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=198;Dels=0.00;FS=10.937;HaplotypeScore=15.6707;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.735;QD=19.51;ReadPosRankSum=2.412;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:3863,473,0 chrIII 211159 . T G 6902.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=16.1802;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.12;SB=-3.452e+03 GT:AD:DP:GQ:PL 1/1:0,307:312:99:6902,795,0 chrIII 211204 . A G 5814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=286;Dels=0.00;FS=2.960;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.192;QD=20.33;ReadPosRankSum=2.415;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:2,284:286:99:5814,678,0 chrIII 211348 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.6518;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.21;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4425,510,0 chrIII 211548 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=135;Dels=0.00;FS=8.379;HaplotypeScore=9.8574;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.414;QD=18.98;ReadPosRankSum=2.413;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2595,303,0 chrIII 211573 . T G 2545 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.18;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:2578,303,0 chrIII 211713 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=84.0662;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.57;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3243,369,0 chrIII 211997 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=5.8474;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.601;QD=18.03;ReadPosRankSum=2.408;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:4,233:239:99:4308,510,0 chrIII 211998 . G C 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=240;Dels=0.00;FS=8.878;HaplotypeScore=8.1040;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.758;QD=18.24;ReadPosRankSum=3.329;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:4,234:240:99:4377,510,0 chrIII 212063 . G T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.7265;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=14.78;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:3354,390,0 chrIII 212107 . C G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.0336;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=18.00;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:4194,492,0 chrIII 212125 . C G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.8400;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=17.85;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4052,480,0 chrIII 212321 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.03;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4374,504,0 chrIII 212415 . A G 5487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=246;Dels=0.00;FS=7.229;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.136;QD=22.30;ReadPosRankSum=2.429;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:2,241:246:99:5487,636,0 chrIII 212504 . C T 5776.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=7.1339;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.24;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:5776,663,0 chrIII 212528 . A T 6815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=311;Dels=0.00;FS=6.049;HaplotypeScore=14.9417;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.564;QD=21.91;ReadPosRankSum=1.710;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,310:311:99:6815,786,0 chrIII 213011 . G A 5774.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=21.5130;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.71;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5774,660,0 chrIII 213069 . T C 8223.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=26.5309;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.457;QD=22.47;ReadPosRankSum=2.904;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:3,361:366:99:8223,959,0 chrIII 213185 . G C 5234.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.3613;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.68;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,262:266:99:5234,626,0 chrIII 213324 . A G 6102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.682;DP=358;Dels=0.00;FS=4.843;HaplotypeScore=18.6633;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.297;QD=17.04;ReadPosRankSum=3.769;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:5,353:358:99:6102,737,0 chrIII 213542 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=186;Dels=0.00;FS=5.817;HaplotypeScore=17.3656;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.549;QD=20.86;ReadPosRankSum=2.940;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:3880,459,0 chrIII 213620 . G A 4562.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.7983;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.32;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4562,551,0 chrIII 213701 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.77;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2060,234,0 chrIII 213714 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.63;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1747,207,0 chrIII 213768 . A G 1482 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9914;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=13.23;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1515,180,0 chrIII 213859 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=23.1799;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=17.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1125,129,0 chrIII 213973 . T C 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.363;QD=20.35;ReadPosRankSum=1.704;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2516,300,0 chrIII 214051 . A T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7386;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.61;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3589,414,0 chrIII 214145 . A C 6510.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=14.6825;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.37;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:6510,788,0 chrIII 214310 . T C 11176.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=523;Dels=0.00;FS=4.808;HaplotypeScore=21.9463;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.067;QD=21.37;ReadPosRankSum=3.840;SB=-3.766e+03 GT:AD:DP:GQ:PL 1/1:5,518:523:99:11176,1354,0 chrIII 214455 . G A 10819.01 filter AC=2;AF=1.00;AN=2;DP=506;Dels=0.00;FS=0.000;HaplotypeScore=21.7151;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.38;SB=-4.990e+03 GT:AD:DP:GQ:PL 1/1:0,505:506:99:10819,1230,0 chrIII 214574 . T C 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.092;DP=318;Dels=0.00;FS=8.187;HaplotypeScore=19.6847;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.337;QD=16.92;ReadPosRankSum=2.064;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:3,314:318:99:5380,639,0 chrIII 214742 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=139;Dels=0.00;FS=2.524;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.080;QD=21.04;ReadPosRankSum=2.877;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2958,345,0 chrIII 214762 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.80;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2409,291,0 chrIII 214896 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.73;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2920,333,0 chrIII 215005 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.78;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2565,297,0 chrIII 215020 . T G 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.815;QD=18.06;ReadPosRankSum=1.707;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2525,300,0 chrIII 215332 . C T 3957.01 SnpCluster AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=16.49;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:3957,459,0 chrIII 215336 . A G 4138.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=245;Dels=0.00;FS=3.323;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-0.007;QD=16.89;ReadPosRankSum=1.676;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:4138,483,0 chrIII 215341 . A G 3674.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.099;DP=250;Dels=0.00;FS=11.448;HaplotypeScore=5.6310;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.554;QD=14.70;ReadPosRankSum=4.507;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:8,240:250:99:3674,423,0 chrIII 215344 . G A 3738.01 SnpCluster AC=2;AF=1.00;AN=2;DP=257;Dels=0.03;FS=0.000;HaplotypeScore=17.1833;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=14.54;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,243:250:99:3738,429,0 chrIII 215487 . G T 6935.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=23.5415;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.30;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:0,311:311:99:6935,801,0 chrIII 215671 . T C 7525.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=20.9446;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.32;SB=-4.024e+03 GT:AD:DP:GQ:PL 1/1:0,351:353:99:7525,902,0 chrIII 215830 . T C 5657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=288;Dels=0.00;FS=7.997;HaplotypeScore=7.8574;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.183;QD=19.64;ReadPosRankSum=2.339;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:2,286:288:99:5657,695,0 chrIII 215848 . C T 5468.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=9.5083;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.67;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:5468,630,0 chrIII 215935 . G A 5071.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=19.1725;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.05;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5071,576,0 chrIII 216042 . T C 4894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=236;Dels=0.00;FS=8.988;HaplotypeScore=18.3195;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.255;QD=20.74;ReadPosRankSum=3.349;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:4,230:236:99:4894,570,0 chrIII 216257 . C T 6048.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=14.2884;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.36;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:6048,696,0 chrIII 216268 . T C 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=8.5943;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.506;QD=18.77;ReadPosRankSum=1.720;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:1,290:291:99:5461,639,0 chrIII 216352 . T C 5385.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=17.6331;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.40;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5385,653,0 chrIII 216424 . G C 4125.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.9143;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.32;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4125,491,0 chrIII 216488 . T G 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=231;Dels=0.00;FS=7.047;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.501;QD=19.90;ReadPosRankSum=1.702;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,227:231:99:4596,540,0 chrIII 216750 . A C 2805 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4433;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.09;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2838,330,0 chrIII 217089 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.25;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3982,459,0 chrIII 217266 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.94;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3069,351,0 chrIII 217467 . A C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8264;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.28;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3428,399,0 chrIII 218143 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2627,297,0 chrIII 218372 . A C 1799 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1832,216,0 chrIII 218547 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3327,381,0 chrIII 218655 . T C 3192 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5537;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.57;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3225,375,0 chrIII 218835 . A T 2706 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.7051;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2739,327,0 chrIII 218880 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.98;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2488,294,0 chrIII 218915 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.60;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2767,318,0 chrIII 219276 . T C 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=3.808;HaplotypeScore=8.1566;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.797;QD=20.53;ReadPosRankSum=1.707;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2866,333,0 chrIII 219318 . A G 2460 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.16;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2493,305,0 chrIII 219477 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.93;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2670,318,0 chrIII 219561 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3173,366,0 chrIII 219696 . A G 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.640;QD=24.01;ReadPosRankSum=1.627;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3962,462,0 chrIII 220080 . A G 2481 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.69;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2514,294,0 chrIII 220094 . T C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=6.948;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.279;QD=18.88;ReadPosRankSum=2.410;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2374,293,0 chrIII 220158 . G A 1843 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6584;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.43;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1876,219,0 chrIII 220294 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=9.4955;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=18.54;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2091,249,0 chrIII 220477 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.650;QD=21.48;ReadPosRankSum=1.710;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3459,408,0 chrIII 220624 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4459,513,0 chrIII 220904 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=156;Dels=0.00;FS=3.458;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.370;QD=21.19;ReadPosRankSum=1.687;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3305,384,0 chrIII 221219 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.52;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2727,327,0 chrIII 221240 . C A 2838 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.83;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2871,327,0 chrIII 221705 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.332;QD=20.94;ReadPosRankSum=1.705;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2755,321,0 chrIII 221720 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=140;Dels=0.00;FS=10.947;HaplotypeScore=5.9557;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.460;QD=18.26;ReadPosRankSum=2.892;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2589,314,0 chrIII 222056 . A G 4323.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.7209;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.68;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4323,521,0 chrIII 222347 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.54;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3810,452,0 chrIII 222443 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=222;Dels=0.00;FS=3.621;HaplotypeScore=21.4940;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.917;QD=21.00;ReadPosRankSum=1.716;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4662,540,0 chrIII 222497 . C G 4414.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.72;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4414,513,0 chrIII 222524 . G T 4303.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.65;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4303,495,0 chrIII 222662 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.82;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3863,435,0 chrIII 222746 . G A 5113.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.48;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5113,579,0 chrIII 223236 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.26;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3133,360,0 chrIII 223280 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=20.4505;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=17.68;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2455,294,0 chrIII 223434 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.97;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3089,383,0 chrIII 223523 . A T 6206.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=20.8292;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.07;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6206,714,0 chrIII 223676 . T C 7031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=356;Dels=0.00;FS=2.995;HaplotypeScore=20.4285;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.403;QD=19.75;ReadPosRankSum=2.387;SB=-4.088e+03 GT:AD:DP:GQ:PL 1/1:2,352:356:99:7031,807,0 chrIII 224009 . A G 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=221;Dels=0.00;FS=5.377;HaplotypeScore=16.8950;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.668;QD=20.77;ReadPosRankSum=2.850;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:3,218:221:99:4590,517,0 chrIII 224038 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.1264;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.53;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4127,494,0 chrIII 224075 . G T 2586 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.74;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2619,294,0 chrIII 224288 . A G 143.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=7.2467;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.896;QD=7.95;ReadPosRankSum=2.132;SB=-6.506e+01 GT:AD:DP:GQ:PL 1/1:3,15:18:21:176,21,0 chrIII 224437 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=0.210;QD=22.99;ReadPosRankSum=2.921;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3228,361,0 chrIII 224492 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=24.79;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3743,435,0 chrIII 224609 . G C 2311 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=20.10;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2344,267,0 chrIII 224619 . T C 2047 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=16.51;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2080,257,0 chrIII 224620 . A G 2176 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;MQRankSum=-1.775;QD=17.55;ReadPosRankSum=2.390;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2209,258,0 chrIII 224623 . T C 2272 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=17.89;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2305,270,0 chrIII 224674 . T G 2411 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=15.66;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2444,291,0 chrIII 224791 . A G 163.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.255;DP=15;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.425;QD=10.87;ReadPosRankSum=0.255;SB=-7.402e+01 GT:AD:DP:GQ:PL 1/1:2,13:15:24:196,24,0 chrIII 224793 . A G 164.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.085;DP=15;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.425;QD=10.94;ReadPosRankSum=0.255;SB=-7.502e+01 GT:AD:DP:GQ:PL 1/1:2,13:15:24:197,24,0 chrIII 224795 . A G 165.03 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=9.71;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:198,24,0 chrIII 224821 . T C 671 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.77;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:704,87,0 chrIII 224861 . T G 989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.577;QD=19.39;ReadPosRankSum=1.664;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1022,126,0 chrIII 224874 . T A 1093 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=19.87;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1126,138,0 chrIII 224913 . T C 770 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=20.81;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:96:803,96,0 chrIII 224924 . T C 800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;MQRankSum=1.320;QD=19.05;ReadPosRankSum=1.650;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:99:833,99,0 chrIII 224961 . C T 1486 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=21.54;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1519,177,0 chrIII 224994 . C T 1707 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=19.85;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1740,204,0 chrIII 225006 . T C 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=-1.126;QD=19.78;ReadPosRankSum=2.403;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2130,252,0 chrIII 225088 . T C 1908 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.87;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1941,228,0 chrIII 225116 . G C 1404 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=57.0270;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=19.50;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1437,165,0 chrIII 225143 . G C 1649 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=17.00;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1682,204,0 chrIII 225173 . G C 1847 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=15.52;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1880,219,0 chrIII 225180 . G C 1697 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=13.47;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1730,213,0 chrIII 225200 . G T 1988 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=14.62;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2021,231,0 chrIII 225234 . A G 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=117;Dels=0.00;FS=2.880;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=1.377;QD=16.33;ReadPosRankSum=2.408;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1944,225,0 chrIII 225256 . C G 1822 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.19;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1855,219,0 chrIII 225456 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.1343;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=17.96;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2062,249,0 chrIII 225558 . G C 4409.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=23.21;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4409,524,0 chrIII 225710 . T C 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=295;Dels=0.00;FS=2.820;HaplotypeScore=9.8673;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.853;QD=17.42;ReadPosRankSum=2.223;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:2,290:295:99:5138,602,0 chrIII 225718 . T C 5732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=14.2935;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.158;QD=18.67;ReadPosRankSum=1.664;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:1,305:307:99:5732,663,0 chrIII 225870 . G A 5521.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=19.0196;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.79;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,276:279:99:5521,639,0 chrIII 226701 . C G 4716.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.35;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4716,537,0 chrIII 226753 . A G 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=216;Dels=0.00;FS=3.025;HaplotypeScore=13.6533;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.840;QD=18.60;ReadPosRankSum=2.426;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:2,211:216:99:4018,491,0 chrIII 226774 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.9624;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.42;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4020,465,0 chrIII 226915 . T C 5247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=257;Dels=0.00;FS=2.985;HaplotypeScore=16.0561;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.742;QD=20.42;ReadPosRankSum=2.391;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:2,251:257:99:5247,644,0 chrIII 227027 . G C 4806.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.9284;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.63;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4806,567,0 chrIII 227514 . G A 830 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=13.39;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:863,99,0 chrIII 227570 . G A 982 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.64;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1015,114,0 chrIII 227581 . A T 898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.979;QD=19.52;ReadPosRankSum=1.657;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:99:931,105,0 chrIII 227763 . C A 1178 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.41;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1211,138,0 chrIII 227865 . C G 2154 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=20.32;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2187,249,0 chrIII 227866 . T G 2139 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=20.18;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2172,249,0 chrIII 227879 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=17.64;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1850,222,0 chrIII 227941 . T C 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.4840;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.108;QD=19.23;ReadPosRankSum=1.705;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2514,308,0 chrIII 228054 . T A 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=127;Dels=0.00;FS=1.825;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;MQRankSum=-1.050;QD=14.94;ReadPosRankSum=3.712;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:5,122:127:99:1931,234,0 chrIII 228055 . T A 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=127;Dels=0.00;FS=5.275;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;MQRankSum=-0.800;QD=15.99;ReadPosRankSum=3.347;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:4,123:127:99:2064,237,0 chrIII 228130 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.31;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2824,336,0 chrIII 228176 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.02;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2956,336,0 chrIII 228291 . C A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.51;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3385,384,0 chrIII 228554 . T C 5288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=239;Dels=0.00;FS=2.572;HaplotypeScore=13.7069;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.315;QD=22.13;ReadPosRankSum=2.971;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:5288,626,0 chrIII 229275 . A G 209 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.979;DP=94;Dels=0.00;FS=4.006;HaplotypeScore=4.4574;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=1.102;QD=2.22;ReadPosRankSum=-4.695;SB=3.00 GT:AD:DP:GQ:PL 1/1:79,15:94:30:242,30,0 chrIII 229345 . T G 2992 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8909;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.81;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3025,348,0 chrIII 229363 . A G 2851 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.53;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2884,333,0 chrIII 230047 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6897;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.52;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3132,354,0 chrIII 230134 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=153;Dels=0.00;FS=5.906;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.204;QD=22.92;ReadPosRankSum=2.888;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3506,416,0 chrIII 230222 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.72;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3388,399,0 chrIII 230267 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.60;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3368,390,0 chrIII 230490 . A C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3461,411,0 chrIII 230636 . C A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8175;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.42;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4036,459,0 chrIII 231417 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.5071;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.43;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3491,399,0 chrIII 231858 . G T 3125 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.55;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3158,363,0 chrIII 231898 . T C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.012;DP=144;Dels=0.00;FS=3.700;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.538;QD=20.42;ReadPosRankSum=-0.472;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2974,344,0 chrIII 232007 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.85;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2693,315,0 chrIII 232030 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.31;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2563,309,0 chrIII 232199 . A C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.66;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3377,396,0 chrIII 232533 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.86;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2722,315,0 chrIII 232537 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.06;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2500,288,0 chrIII 232698 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.73;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2749,315,0 chrIII 232890 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1647,198,0 chrIII 232933 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.20;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2132,249,0 chrIII 233360 . C T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.0270;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.02;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4477,516,0 chrIII 233404 . C A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.46;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3560,408,0 chrIII 233545 . C G 3494.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=21.97;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3494,405,0 chrIII 233572 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=20.49;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3340,390,0 chrIII 233608 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=17.60;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2602,314,0 chrIII 233617 . A G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-1.176;QD=16.30;ReadPosRankSum=1.682;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2299,281,0 chrIII 233654 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.30;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3377,413,0 chrIII 233678 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.76;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3550,405,0 chrIII 233727 . C A 2692 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=16.82;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2725,312,0 chrIII 233753 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;QD=14.21;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1838,213,0 chrIII 233756 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=14.49;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1859,213,0 chrIII 233767 . A C 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.730;DP=145;Dels=0.00;FS=4.405;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;MQRankSum=0.344;QD=9.90;ReadPosRankSum=5.902;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:23,122:145:99:1469,148,0 chrIII 233773 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.980;DP=143;Dels=0.00;FS=5.821;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;MQRankSum=3.022;QD=9.26;ReadPosRankSum=4.178;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:24,119:143:99:1357,112,0 chrIII 233797 . A C 1316 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1792;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;MQRankSum=0.627;QD=9.33;ReadPosRankSum=1.069;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:1349,168,0 chrIII 233803 . A G 1229 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;MQRankSum=-1.280;QD=8.91;ReadPosRankSum=1.657;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1262,153,0 chrIII 233807 . G T 1026 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.053;DP=132;Dels=0.00;FS=0.818;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;MQRankSum=0.655;QD=7.77;ReadPosRankSum=-5.313;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:26,106:132:85:1059,85,0 chrIII 233808 . G A 1140 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.923;DP=138;Dels=0.00;FS=0.831;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;MQRankSum=0.993;QD=8.26;ReadPosRankSum=-5.332;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:26,110:138:94:1173,94,0 chrIII 233813 . A G 1539 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;MQRankSum=-0.081;QD=10.33;ReadPosRankSum=1.662;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:1572,192,0 chrIII 233910 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.293;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=-0.812;QD=18.72;ReadPosRankSum=1.708;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2728,318,0 chrIII 233911 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=18.70;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2745,318,0 chrIII 233941 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=18.79;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3040,357,0 chrIII 234004 . T A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=21.56;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3622,420,0 chrIII 234079 . G A 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.7016;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.668;QD=21.21;ReadPosRankSum=1.633;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3023,329,0 chrIII 234202 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.083;QD=21.25;ReadPosRankSum=1.690;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3570,420,0 chrIII 234521 . G C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=3.367;HaplotypeScore=8.7008;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.820;QD=21.08;ReadPosRankSum=0.273;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3258,375,0 chrIII 234551 . A G 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.150;QD=20.58;ReadPosRankSum=2.415;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2914,345,0 chrIII 234608 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=20.65;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3283,375,0 chrIII 234617 . G C 3035 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=18.51;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3068,357,0 chrIII 234626 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.3755;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=19.09;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3340,387,0 chrIII 234679 . T A 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=3.552;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=1.229;QD=17.26;ReadPosRankSum=1.693;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3139,369,0 chrIII 234688 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=17.34;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3015,351,0 chrIII 234696 . T G 2979 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5700;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=17.95;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3012,357,0 chrIII 234792 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=21.21;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2790,318,0 chrIII 234906 . A T 110.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.859;DP=173;Dels=0.00;FS=4.529;HaplotypeScore=11.6279;MLEAC=1;MLEAF=0.500;MQ=39.60;MQ0=0;MQRankSum=-1.331;QD=0.64;ReadPosRankSum=-8.021;SB=-5.050e+02 GT:AD:DP:GQ:PL 0/1:103,70:173:99:140,0,1307 chrIII 235011 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.067;QD=21.98;ReadPosRankSum=1.677;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2781,327,0 chrIII 235062 . C T 2453 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=18.58;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2486,297,0 chrIII 235065 . C T 2453 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=18.44;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2486,299,0 chrIII 235070 . G T 2295 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=17.93;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2328,276,0 chrIII 235141 . T C 2405 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9333;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.22;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2438,288,0 chrIII 235153 . G A 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.257;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.423;QD=18.96;ReadPosRankSum=-0.859;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2441,294,0 chrIII 235472 . A G 3194 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.01;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3227,384,0 chrIII 235561 . T A 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=3.219;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.434;QD=21.11;ReadPosRankSum=1.705;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2756,318,0 chrIII 235639 . T A 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=137;Dels=0.00;FS=12.527;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.066;QD=19.31;ReadPosRankSum=2.905;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2678,312,0 chrIII 235645 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.03;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2797,324,0 chrIII 235669 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.09;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2687,303,0 chrIII 236014 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4646;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.54;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3451,413,0 chrIII 236032 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.48;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3482,396,0 chrIII 236052 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=1.028;QD=18.44;ReadPosRankSum=1.673;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3301,378,0 chrIII 236104 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.36;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3664,440,0 chrIII 236387 . G A 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.01;FS=3.782;HaplotypeScore=19.3841;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=-0.738;QD=21.44;ReadPosRankSum=1.705;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2820,321,0 chrIII 236513 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=2.818;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.428;QD=22.44;ReadPosRankSum=2.384;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2546,297,0 chrIII 236789 . T C 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.412;DP=93;Dels=0.00;FS=12.731;HaplotypeScore=14.3153;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.986;QD=12.63;ReadPosRankSum=2.460;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:5,88:93:99:1208,123,0 chrIII 236949 . A G 2885 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.3426;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.91;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2918,336,0 chrIII 237102 . C A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.67;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3576,428,0 chrIII 237474 . C T 4131.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.97;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4131,483,0 chrIII 237606 . G A 4852.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=3.6154;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.41;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,242:250:99:4852,555,0 chrIII 237610 . T A 4862.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=4.4068;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.77;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:4862,555,0 chrIII 237645 . C T 4422.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=12.7236;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=17.83;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:4422,516,0 chrIII 237699 . C G 5631.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=21.4239;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.55;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,267:274:99:5631,680,0 chrIII 237732 . T C 6029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=280;Dels=0.00;FS=3.004;HaplotypeScore=16.1126;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.897;QD=21.53;ReadPosRankSum=2.414;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:2,278:280:99:6029,716,0 chrIII 237904 . G A 5872.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=16.2435;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.43;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:0,270:274:99:5872,672,0 chrIII 237960 . G A 5568.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.10;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5568,633,0 chrIII 238082 . T C 5088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=245;Dels=0.00;FS=3.639;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.096;QD=20.77;ReadPosRankSum=1.633;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5088,597,0 chrIII 238260 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=23.5256;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.38;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4904,570,0 chrIII 238350 . C T 6727.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.38;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,329:330:99:6727,780,0 chrIII 238359 . C T 6502.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.26;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,320:321:99:6502,756,0 chrIII 238854 . A T 4457.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.7643;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.43;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4457,510,0 chrIII 239234 . G T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.6351;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.23;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4066,480,0 chrIII 239312 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.8954;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.98;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4321,510,0 chrIII 239361 . A G 4313.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.8018;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.04;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4313,507,0 chrIII 239515 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.5459;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.234;QD=20.51;ReadPosRankSum=1.689;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3281,378,0 chrIII 239957 . T C 1372 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.14;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1405,174,0 chrIII 240075 . C A 644 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.94;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:677,78,0 chrIII 240280 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1797,204,0 chrIII 240337 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.48;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3126,357,0 chrIII 240607 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.33;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3143,357,0 chrIII 240608 . T A 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=154;Dels=0.00;FS=11.734;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.426;QD=19.60;ReadPosRankSum=2.337;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3052,354,0 chrIII 240922 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=22.5660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.646;QD=20.35;ReadPosRankSum=1.712;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3460,405,0 chrIII 241156 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0022;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.73;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3358,393,0 chrIII 241753 . T C 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.8004;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.104;QD=21.44;ReadPosRankSum=1.714;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4138,488,0 chrIII 242002 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.06;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3450,408,0 chrIII 242071 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.84;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3355,390,0 chrIII 242137 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.23;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2926,342,0 chrIII 242143 . A G 2754 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.10;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2787,321,0 chrIII 242230 . A T 2284 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.95;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2317,267,0 chrIII 242239 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.10;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2544,297,0 chrIII 242482 . C T 764 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;QD=13.40;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:797,96,0 chrIII 242483 . G A 813 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;QD=14.26;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:846,102,0 chrIII 242502 . C T 903 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=14.56;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:936,105,0 chrIII 242507 . T G 862 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;QD=13.47;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:895,105,0 chrIII 242524 . C T 840 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=12.35;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:873,105,0 chrIII 242556 . G T 1320 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=17.60;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1353,156,0 chrIII 242575 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=16.94;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1456,171,0 chrIII 242581 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=15.71;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1431,174,0 chrIII 242604 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.96;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2268,258,0 chrIII 242680 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=22.56;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2921,345,0 chrIII 242723 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.67;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3229,378,0 chrIII 242777 . T A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0332;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.59;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3448,413,0 chrIII 242801 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=18.08;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3363,401,0 chrIII 242882 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.599;DP=160;Dels=0.00;FS=11.654;HaplotypeScore=6.3817;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.608;QD=16.96;ReadPosRankSum=3.795;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:5,155:160:99:2747,335,0 chrIII 242886 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=170;Dels=0.00;FS=10.335;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.125;QD=16.14;ReadPosRankSum=2.863;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:2776,318,0 chrIII 243142 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=224;Dels=0.00;FS=3.759;HaplotypeScore=7.2291;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.528;QD=19.13;ReadPosRankSum=1.701;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:4285,507,0 chrIII 243144 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.6229;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.419;QD=16.32;ReadPosRankSum=1.574;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,221:226:99:3689,440,0 chrIII 243779 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.55;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3051,348,0 chrIII 243794 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.651;QD=18.42;ReadPosRankSum=1.659;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3481,396,0 chrIII 243897 . T A 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.921;HaplotypeScore=5.5573;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.927;QD=20.65;ReadPosRankSum=1.676;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3821,429,0 chrIII 244013 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.89;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3634,426,0 chrIII 244073 . G T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.29;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3428,393,0 chrIII 244175 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=132;Dels=0.00;FS=7.156;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.707;QD=20.07;ReadPosRankSum=2.411;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,125:132:99:2682,312,0 chrIII 244418 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=158;Dels=0.00;FS=8.057;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.181;QD=21.54;ReadPosRankSum=2.371;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3403,390,0 chrIII 244604 . T C 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.336;QD=20.12;ReadPosRankSum=1.680;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2749,318,0 chrIII 244619 . A G 2420 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.67;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2453,296,0 chrIII 244643 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.34;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2555,303,0 chrIII 244882 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.90;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2595,300,0 chrIII 245054 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.58;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2223,255,0 chrIII 245066 . G A 2428 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.30;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2461,285,0 chrIII 245288 . T C 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.187;QD=20.95;ReadPosRankSum=1.678;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2715,318,0 chrIII 245408 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.85;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2546,297,0 chrIII 245426 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.78;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2444,279,0 chrIII 245434 . A G 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=127;Dels=0.00;FS=2.594;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.176;QD=17.04;ReadPosRankSum=2.944;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:3,123:127:99:2197,255,0 chrIII 245483 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.396;QD=20.71;ReadPosRankSum=1.678;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2663,312,0 chrIII 245516 . C A 2277 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.70;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2310,267,0 chrIII 245631 . C A 2699 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.92;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2732,306,0 chrIII 245651 . C T 2493 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.13;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2526,291,0 chrIII 245721 . C A 2758 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9571;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.55;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2791,321,0 chrIII 245744 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.225;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.299;QD=20.00;ReadPosRankSum=1.708;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2933,342,0 chrIII 245762 . A C 2885 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.76;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2918,339,0 chrIII 245824 . G C 3109 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=19.55;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3142,366,0 chrIII 245856 . T G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.832;QD=19.45;ReadPosRankSum=1.710;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3047,371,0 chrIII 245895 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.44;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3345,401,0 chrIII 246035 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.7942;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=15.75;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3041,348,0 chrIII 246065 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.8874;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=17.62;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3222,372,0 chrIII 246171 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.2914;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.35;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4121,500,0 chrIII 246242 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=18.43;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3093,371,0 chrIII 246259 . G T 2993 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=16.45;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3026,365,0 chrIII 246269 . G C 3386.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=18.01;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3386,393,0 chrIII 246277 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.5137;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=16.54;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3225,378,0 chrIII 246409 . G A 2679 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=20.77;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2712,312,0 chrIII 246416 . G A 2587 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=19.90;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2620,306,0 chrIII 246419 . T C 2491 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=18.87;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2524,300,0 chrIII 246432 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=18.70;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2501,288,0 chrIII 246484 . A G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.107;DP=115;Dels=0.00;FS=2.657;HaplotypeScore=7.3286;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=0.289;QD=18.53;ReadPosRankSum=0.032;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2164,242,0 chrIII 246581 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2842;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.88;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2129,255,0 chrIII 246619 . T G 2048 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=20.48;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2081,249,0 chrIII 246643 . A G 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.412;QD=19.36;ReadPosRankSum=1.691;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1659,201,0 chrIII 246729 . A T 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=3.378;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=1.498;QD=19.79;ReadPosRankSum=1.685;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1537,177,0 chrIII 246742 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.27;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1324,153,0 chrIII 246769 . A G 1110 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=15.21;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1143,135,0 chrIII 246809 . A G 828 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=3.763;HaplotypeScore=5.4601;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;MQRankSum=-1.457;QD=9.30;ReadPosRankSum=1.693;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:861,102,0 chrIII 246813 . T G 761 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=9.28;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:93:794,93,0 chrIII 246815 . T A 772 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=-1.604;QD=9.41;ReadPosRankSum=1.689;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:93:805,93,0 chrIII 246818 . T A 797 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=2.592;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;MQRankSum=-1.875;QD=8.86;ReadPosRankSum=2.395;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:96:830,96,0 chrIII 246853 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=12.96;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1303,153,0 chrIII 246876 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.9208;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=15.34;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2364,279,0 chrIII 247101 . A G 6240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=28.4316;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.510;QD=18.91;ReadPosRankSum=1.563;SB=-3.243e+03 GT:AD:DP:GQ:PL 1/1:1,328:330:99:6240,752,0 chrIII 247149 . G A 7540.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=23.7038;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.30;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,353:354:99:7540,855,0 chrIII 247254 . A G 5227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=256;Dels=0.00;FS=5.818;HaplotypeScore=16.1351;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.071;QD=20.42;ReadPosRankSum=2.871;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:3,253:256:99:5227,612,0 chrIII 247334 . A G 5252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.087;DP=248;Dels=0.00;FS=13.593;HaplotypeScore=17.2161;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.218;QD=21.18;ReadPosRankSum=4.081;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:6,241:248:99:5252,609,0 chrIII 247418 . A G 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=238;Dels=0.00;FS=3.047;HaplotypeScore=15.0703;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.164;QD=21.40;ReadPosRankSum=1.703;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5093,594,0 chrIII 247598 . C T 5113.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.8646;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.22;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5113,582,0 chrIII 247757 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.9987;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.84;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3690,432,0 chrIII 248057 . A G 2415 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.22;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2448,273,0 chrIII 248534 . T C 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.591;QD=19.73;ReadPosRankSum=1.678;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5030,591,0 chrIII 248549 . C T 4970.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=13.6551;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=18.68;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:4970,590,0 chrIII 248622 . G A 5086.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=22.3064;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.43;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5086,585,0 chrIII 248857 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.79;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3389,384,0 chrIII 249081 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.15;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3068,345,0 chrIII 249109 . A G 3020 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.12;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3053,360,0 chrIII 249476 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.99;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3760,429,0 chrIII 249499 . C G 3461.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.1510;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.24;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3461,419,0 chrIII 249535 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.3800;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=18.39;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:3403,390,0 chrIII 249541 . C G 3073 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.3668;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=16.61;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3106,374,0 chrIII 249701 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.28;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3489,405,0 chrIII 249750 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=178;Dels=0.00;FS=10.511;HaplotypeScore=9.1397;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.576;QD=20.65;ReadPosRankSum=2.859;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3675,420,0 chrIII 249933 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.31;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2420,276,0 chrIII 250066 . A T 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.568;QD=18.73;ReadPosRankSum=1.705;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2431,270,0 chrIII 250096 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=16.49;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1534,177,0 chrIII 250253 . T A 388 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:48:421,48,0 chrIII 250381 . C A 1711 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1744,198,0 chrIII 250565 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.43;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3196,366,0 chrIII 250700 . T C 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=187;Dels=0.00;FS=2.742;HaplotypeScore=10.8318;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.110;QD=22.89;ReadPosRankSum=2.423;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4280,495,0 chrIII 250841 . G T 2441 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4381;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=16.95;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2474,299,0 chrIII 250855 . A G 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.075;QD=18.48;ReadPosRankSum=2.399;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2750,324,0 chrIII 250937 . G A 3033 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.77;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3066,360,0 chrIII 251323 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=3.849;HaplotypeScore=8.7787;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.859;QD=20.99;ReadPosRankSum=1.679;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2804,321,0 chrIII 251369 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.75;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1964,228,0 chrIII 251378 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.82;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1971,225,0 chrIII 251399 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=17.64;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1885,213,0 chrIII 251444 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.47;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2567,291,0 chrIII 251657 . T C 3017 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.86;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3050,354,0 chrIII 252091 . G A 5451.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.4573;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.29;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5451,618,0 chrIII 252269 . A G 5169.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=9.6632;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.19;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5169,603,0 chrIII 252350 . A G 4615.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.9723;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.91;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4615,569,0 chrIII 252425 . A G 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.057;QD=15.99;ReadPosRankSum=1.721;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:1,312:313:99:5005,602,0 chrIII 252441 . C T 5183.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=4.8599;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=16.35;SB=-3.653e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:5183,594,0 chrIII 252633 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=201;Dels=0.00;FS=2.519;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.545;QD=19.53;ReadPosRankSum=2.945;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:3925,456,0 chrIII 252674 . T G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=5.418;HaplotypeScore=14.3752;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.133;QD=19.23;ReadPosRankSum=1.714;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:3807,450,0 chrIII 252924 . C A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.67;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4172,483,0 chrIII 252979 . T G 4277.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.17;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4277,498,0 chrIII 253015 . G T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.1827;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.59;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3645,411,0 chrIII 253051 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3329;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.27;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3637,411,0 chrIII 253084 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.54;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3301,390,0 chrIII 253093 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.55;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3559,417,0 chrIII 253181 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.66;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3008,342,0 chrIII 253212 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.52;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2825,324,0 chrIII 253696 . G A 4117.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.30;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4117,494,0 chrIII 254961 . T C 2399 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.66;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2432,296,0 chrIII 255150 . C A 2240 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.00;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2273,273,0 chrIII 255192 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.36;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2066,240,0 chrIII 255345 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1829,219,0 chrIII 255699 . C T 2006 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.04;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2039,237,0 chrIII 255804 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8847;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.46;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2590,306,0 chrIII 256257 . T C 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.533;QD=20.33;ReadPosRankSum=1.692;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1802,219,0 chrIII 256801 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.83;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2282,273,0 chrIII 257130 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.02;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2009,231,0 chrIII 257205 . A C 1662 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.16;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1695,195,0 chrIII 257529 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.2375;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.99;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3342,393,0 chrIII 257721 . A T 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=171;Dels=0.00;FS=2.911;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.315;QD=22.16;ReadPosRankSum=2.378;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3789,435,0 chrIII 257755 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.9971;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.668;QD=21.87;ReadPosRankSum=1.709;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3368,393,0 chrIII 257960 . T C 2949 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0818;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2982,362,0 chrIII 258066 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1875,219,0 chrIII 258276 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3040,348,0 chrIII 258306 . G C 2562 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.17;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2595,300,0 chrIII 258780 . T G 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.172;QD=23.79;ReadPosRankSum=2.395;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4259,486,0 chrIII 258847 . A G 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.979;HaplotypeScore=11.2427;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.015;QD=22.52;ReadPosRankSum=1.660;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3288,381,0 chrIII 258915 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.46;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3820,450,0 chrIII 258960 . C A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.55;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4029,474,0 chrIII 259351 . G A 885 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.11;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:99:918,105,0 chrIII 259489 . A G 1894 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.73;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1927,219,0 chrIII 259496 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.04;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1785,210,0 chrIII 259975 . G A 624 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=14.51;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:75:657,75,0 chrIII 260779 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.85;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3378,390,0 chrIII 260782 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.62;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3152,363,0 chrIII 260980 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.62;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3147,378,0 chrIII 261019 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.091;DP=139;Dels=0.00;FS=3.031;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.942;QD=20.56;ReadPosRankSum=2.396;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2891,330,0 chrIII 261672 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.424;QD=21.23;ReadPosRankSum=1.708;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3069,366,0 chrIII 261877 . C T 5629.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=16.8315;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.16;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5629,636,0 chrIII 262126 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=131.8317;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=14.87;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:4669,531,0 chrIII 262154 . C T 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.190;DP=307;Dels=0.00;FS=2.374;HaplotypeScore=80.0887;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=4.933;QD=8.77;ReadPosRankSum=-6.990;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:35,270:307:99:2725,321,0 chrIII 262213 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.2687;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=16.87;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3761,449,0 chrIII 262798 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.37;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2063,246,0 chrIII 262846 . T C 1864 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1897,225,0 chrIII 262954 . T A 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=99.5195;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=-0.680;QD=21.48;ReadPosRankSum=1.701;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2439,282,0 chrIII 263014 . T C 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.196;QD=17.30;ReadPosRankSum=1.634;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1867,219,0 chrIII 263029 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.13;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1889,219,0 chrIII 263059 . C G 1496 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.40;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1529,177,0 chrIII 263835 . G C 2385 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0164;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2418,279,0 chrIII 264441 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.8881;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.506;QD=19.63;ReadPosRankSum=2.355;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:3612,429,0 chrIII 264634 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.7210;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=22.15;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2669,306,0 chrIII 264930 . G T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.02;FS=0.000;HaplotypeScore=21.6048;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.72;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3589,402,0 chrIII 265091 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3291,393,0 chrIII 265240 . T C 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.5257;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.386;QD=19.54;ReadPosRankSum=1.716;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,210:215:99:4201,500,0 chrIII 265283 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.26;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3708,426,0 chrIII 265556 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.61;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3380,390,0 chrIII 265721 . G A 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.142;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2002;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.689;QD=18.60;ReadPosRankSum=0.294;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3047,344,0 chrIII 266048 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.52;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2949,342,0 chrIII 266282 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=16.99;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3160,360,0 chrIII 266283 . G C 3065 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=16.57;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3098,363,0 chrIII 266399 . C G 3530.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3530,408,0 chrIII 266468 . T A 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=191;Dels=0.00;FS=9.096;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.545;QD=19.57;ReadPosRankSum=2.320;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3738,435,0 chrIII 266582 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=6.801;HaplotypeScore=12.0310;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.513;QD=19.31;ReadPosRankSum=2.382;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2852,327,0 chrIII 266663 . G T 2012 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=15.84;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2045,237,0 chrIII 266699 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.62;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2388,290,0 chrIII 266863 . C T 1799 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.21;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1832,219,0 chrIII 266993 . G C 2669 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.07;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2702,318,0 chrIII 267008 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.42;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2538,294,0 chrIII 267157 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.45;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2855,344,0 chrIII 267271 . A C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2480;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.538;QD=21.53;ReadPosRankSum=1.708;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3112,366,0 chrIII 267339 . A G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9117;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.738;QD=20.40;ReadPosRankSum=1.705;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2726,329,0 chrIII 267542 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.71;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3213,372,0 chrIII 267793 . C G 2948 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.90;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2981,368,0 chrIII 267843 . A T 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.101;HaplotypeScore=6.4667;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.469;QD=19.90;ReadPosRankSum=1.660;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2939,351,0 chrIII 267916 . G T 2487 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4255;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.42;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2520,288,0 chrIII 267933 . C A 2742 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.73;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2775,321,0 chrIII 268000 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.45;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2886,333,0 chrIII 268066 . C A 2226 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.53;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2259,270,0 chrIII 268242 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.091;DP=157;Dels=0.00;FS=5.191;HaplotypeScore=11.6406;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.139;QD=21.18;ReadPosRankSum=3.359;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3326,387,0 chrIII 268384 . A G 3176 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.49;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3209,384,0 chrIII 268449 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.59;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3907,453,0 chrIII 268657 . G A 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;DP=221;Dels=0.00;FS=75.104;HaplotypeScore=6.3980;MLEAC=1;MLEAF=0.500;MQ=44.48;MQ0=13;MQRankSum=-6.281;QD=0.54;ReadPosRankSum=0.618;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,51:221:99:149,0,2717 chrIII 268696 . T G 2726 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.5036;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=42;MQRankSum=-0.366;QD=12.28;ReadPosRankSum=1.694;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:2759,332,0 chrIII 268732 . T C 2950 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.062;DP=237;Dels=0.00;FS=17.622;HaplotypeScore=18.0970;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=66;MQRankSum=0.133;QD=12.45;ReadPosRankSum=4.400;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:8,228:237:99:2983,362,0 chrIII 268841 . G A 5863.01 filter AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=8.7857;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=30;QD=18.67;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:5863,666,0 chrIII 268848 . G A 1689.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.265;DP=280;Dels=0.00;FS=17.637;HaplotypeScore=8.2463;MLEAC=1;MLEAF=0.500;MQ=35.29;MQ0=13;MQRankSum=-4.797;QD=6.03;ReadPosRankSum=0.438;SB=-4.120e+02 GT:AD:DP:GQ:PL 0/1:164,116:280:99:1719,0,2555 chrIII 268864 . T G 4318.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;QD=19.45;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4318,512,0 chrIII 268891 . T C 2135 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=53.3113;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;QD=15.93;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2168,252,0 chrIII 268923 . G C 1307 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=15.9560;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;QD=10.80;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,118:121:99:1340,159,0 chrIII 268966 . C T 4723.01 filter AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=31;QD=14.95;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:4723,540,0 chrIII 268984 . G A 5198.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=8.8638;MLEAC=2;MLEAF=1.00;MQ=32.90;MQ0=52;QD=14.13;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:1,366:368:99:5198,606,0 chrIII 269023 . T G 5302.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=416;Dels=0.00;FS=3.885;HaplotypeScore=40.1847;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=74;MQRankSum=-0.713;QD=12.75;ReadPosRankSum=1.722;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:1,413:416:99:5302,644,0 chrIII 269059 . T C 4339.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=285;Dels=0.00;FS=6.559;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=59;MQRankSum=0.158;QD=15.22;ReadPosRankSum=2.428;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:2,282:285:99:4339,533,0 chrIII 269158 . C A 3091.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;DP=232;Dels=0.00;FS=90.127;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.77;MQ0=14;MQRankSum=5.214;QD=13.32;ReadPosRankSum=1.414;SB=-1.668e+03 GT:AD:DP:GQ:PL 0/1:39,193:232:61:3121,0,61 chrIII 269168 . G A 4484.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=6;QD=18.45;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4484,510,0 chrIII 269175 . G A 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166;DP=237;Dels=0.00;FS=79.350;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=44.69;MQ0=2;MQRankSum=-5.037;QD=0.11;ReadPosRankSum=-0.118;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,33:237:57:57,0,3346 chrIII 269177 . A G 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.364;DP=231;Dels=0.00;FS=74.688;HaplotypeScore=3.2054;MLEAC=1;MLEAF=0.500;MQ=45.13;MQ0=1;MQRankSum=-5.348;QD=0.13;ReadPosRankSum=-0.876;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,32:231:59:59,0,3241 chrIII 269224 . A G 3011 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.7488;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=15.60;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3044,360,0 chrIII 269283 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=1.142;QD=20.58;ReadPosRankSum=1.712;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3664,420,0 chrIII 269359 . T C 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.749;DP=180;Dels=0.00;FS=15.816;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-1.229;QD=17.32;ReadPosRankSum=3.767;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:5,171:180:99:3150,366,0 chrIII 269369 . T A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=19.37;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3428,393,0 chrIII 269395 . T C 3053 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9141;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.62;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3086,360,0 chrIII 269446 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.60;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2693,321,0 chrIII 269495 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=154;Dels=0.00;FS=9.149;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.234;QD=20.09;ReadPosRankSum=3.402;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3127,366,0 chrIII 269719 . G C 2684 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.31;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2717,327,0 chrIII 269744 . T A 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.912;QD=18.53;ReadPosRankSum=-1.732;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2164,243,0 chrIII 269842 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=6.436;HaplotypeScore=7.8645;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.084;QD=19.12;ReadPosRankSum=2.404;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3112,377,0 chrIII 269874 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=152;Dels=0.00;FS=3.036;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=-0.946;QD=15.47;ReadPosRankSum=2.417;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2385,276,0 chrIII 269879 . A T 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=149;Dels=0.00;FS=6.109;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=-1.262;QD=15.09;ReadPosRankSum=2.351;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2281,261,0 chrIII 269914 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=12.82;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1764,207,0 chrIII 269921 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=12.09;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1568,189,0 chrIII 269952 . T C 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=-0.415;QD=13.94;ReadPosRankSum=1.646;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1720,201,0 chrIII 269961 . A G 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=3.364;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=0.979;QD=13.67;ReadPosRankSum=1.702;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1605,192,0 chrIII 270018 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=17.61;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2322,267,0 chrIII 270060 . C A 2602 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=9.4317;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.59;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2635,318,0 chrIII 270108 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.35;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3172,363,0 chrIII 270313 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=3.367;HaplotypeScore=9.6344;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.396;QD=21.72;ReadPosRankSum=1.669;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3606,440,0 chrIII 270414 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=4.201;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.631;QD=20.82;ReadPosRankSum=1.712;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3561,411,0 chrIII 270427 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=178;Dels=0.00;FS=8.610;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.520;QD=19.58;ReadPosRankSum=0.465;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3486,392,0 chrIII 270453 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.13;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3094,348,0 chrIII 270576 . G T 2572 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.25;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2605,300,0 chrIII 270582 . A G 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=132;Dels=0.00;FS=5.658;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.700;QD=19.02;ReadPosRankSum=2.916;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2544,303,0 chrIII 271032 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.1248;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.80;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4207,483,0 chrIII 271106 . G A 7468.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=30.4726;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.26;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,320:321:99:7468,846,0 chrIII 271180 . C T 5985.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.45;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,340:343:99:5985,701,0 chrIII 271181 . C A 5731.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=16.96;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,337:338:99:5731,692,0 chrIII 271313 . T A 9726.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=479;Dels=0.00;FS=3.019;HaplotypeScore=31.0392;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=-0.734;QD=20.30;ReadPosRankSum=2.413;SB=-5.866e+03 GT:AD:DP:GQ:PL 1/1:2,477:479:99:9726,1098,0 chrIII 271358 . C T 9588.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;DP=486;Dels=0.00;FS=0.000;HaplotypeScore=34.3587;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-1.725;QD=19.73;ReadPosRankSum=-0.949;SB=-5.728e+03 GT:AD:DP:GQ:PL 1/1:1,483:486:99:9588,1086,0 chrIII 271512 . T C 3427.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.638;DP=384;Dels=0.00;FS=12.145;HaplotypeScore=15.6264;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=-1.951;QD=8.92;ReadPosRankSum=3.816;SB=-4.390e+03 GT:AD:DP:GQ:PL 1/1:5,379:384:99:3427,408,0 chrIII 271594 . A G 8092.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=435;Dels=0.00;FS=8.828;HaplotypeScore=26.9768;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.451;QD=18.60;ReadPosRankSum=3.378;SB=-4.526e+03 GT:AD:DP:GQ:PL 1/1:4,430:435:99:8092,985,0 chrIII 271744 . T C 7340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=358;Dels=0.00;FS=8.314;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.748;QD=20.50;ReadPosRankSum=2.422;SB=-3.265e+03 GT:AD:DP:GQ:PL 1/1:2,354:358:99:7340,889,0 chrIII 271775 . T C 7632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=355;Dels=0.00;FS=15.067;HaplotypeScore=18.7702;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.321;QD=21.50;ReadPosRankSum=3.398;SB=-3.498e+03 GT:AD:DP:GQ:PL 1/1:4,351:355:99:7632,887,0 chrIII 271976 . A C 5734.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=11.6470;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.08;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:5734,657,0 chrIII 272072 . G A 4918.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.3180;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.84;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4918,558,0 chrIII 272125 . G A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.69;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3787,432,0 chrIII 272348 . A G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.00;FS=10.809;HaplotypeScore=10.8545;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.872;QD=20.23;ReadPosRankSum=2.383;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3048,374,0 chrIII 272954 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.387;QD=21.25;ReadPosRankSum=1.698;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2243,258,0 chrIII 272975 . A C 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=104;Dels=0.00;FS=2.838;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.155;QD=17.29;ReadPosRankSum=2.306;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:1831,213,0 chrIII 272988 . A G 1341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.188;QD=15.96;ReadPosRankSum=1.690;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1374,165,0 chrIII 273072 . T C 1002 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=17.58;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1035,120,0 chrIII 273250 . A G 936 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=20.35;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:969,117,0 chrIII 273260 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=20.91;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:995,111,0 chrIII 273348 . A T 1375 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=9.2547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.54;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1408,162,0 chrIII 273406 . A G 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=4.225;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=-0.338;QD=17.73;ReadPosRankSum=1.690;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1487,177,0 chrIII 273439 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=11.92;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1034,120,0 chrIII 273446 . A G 946 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=11.26;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:979,114,0 chrIII 273450 . A T 870 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=10.74;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:903,108,0 chrIII 273452 . T G 870 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;MQRankSum=-1.732;QD=10.61;ReadPosRankSum=1.690;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:903,105,0 chrIII 273474 . T C 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;MQRankSum=-1.055;QD=11.72;ReadPosRankSum=1.692;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1053,126,0 chrIII 273518 . T C 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=-1.220;QD=13.73;ReadPosRankSum=1.653;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1241,144,0 chrIII 273523 . T G 1249 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=15.81;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1282,147,0 chrIII 273723 . T G 3088 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.22;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3121,372,0 chrIII 273940 . C T 2067 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=91.4695;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.82;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2100,240,0 chrIII 274022 . A G 2926 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=18.52;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2959,359,0 chrIII 274124 . T A 2436 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.35;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2469,288,0 chrIII 274173 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.1383;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.11;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1982,237,0 chrIII 274250 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=14.85;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2305,276,0 chrIII 274255 . A C 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=149;Dels=0.00;FS=2.803;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.157;QD=16.70;ReadPosRankSum=2.417;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2522,288,0 chrIII 274321 . A G 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=136;Dels=0.00;FS=12.334;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.231;QD=19.56;ReadPosRankSum=2.948;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2693,312,0 chrIII 274530 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=192;Dels=0.00;FS=9.309;HaplotypeScore=11.2751;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.826;QD=20.53;ReadPosRankSum=2.869;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:3942,479,0 chrIII 274645 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=205;Dels=0.00;FS=2.986;HaplotypeScore=16.0896;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.887;QD=21.29;ReadPosRankSum=2.426;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4365,516,0 chrIII 274679 . T C 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=212;Dels=0.00;FS=6.008;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.640;QD=20.93;ReadPosRankSum=2.967;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:4437,519,0 chrIII 275018 . A C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=144;Dels=0.00;FS=5.247;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.340;QD=20.15;ReadPosRankSum=2.951;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2935,342,0 chrIII 275618 . G T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.89;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3503,405,0 chrIII 275765 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.6998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2210,267,0 chrIII 276586 . A G 800 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.62;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:99:833,99,0 chrIII 276617 . C T 564 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.45;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:72:597,72,0 chrIII 277187 . C T 2274 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.72;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2307,261,0 chrIII 277277 . T C 2922 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.48;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2955,342,0 chrIII 277310 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.05;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2878,339,0 chrIII 277384 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.866;QD=21.83;ReadPosRankSum=1.684;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3198,375,0 chrIII 277421 . A G 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=6.368;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.288;QD=20.89;ReadPosRankSum=2.397;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3000,351,0 chrIII 277448 . C A 2756 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.36;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2789,315,0 chrIII 277511 . A G 2875 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.39;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2908,336,0 chrIII 277564 . G T 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.801;DP=134;Dels=0.00;FS=170.920;HaplotypeScore=15.3366;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-0.611;QD=1.19;ReadPosRankSum=-4.998;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,31:134:99:189,0,1299 chrIII 278139 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.68;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1460,168,0 chrIII 278151 . G A 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.172;DP=69;Dels=0.00;FS=3.140;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=1.477;QD=17.38;ReadPosRankSum=1.376;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1232,144,0 chrIII 278153 . A G 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.367;QD=17.74;ReadPosRankSum=1.627;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1239,144,0 chrIII 278462 . T A 2923 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.27;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2956,354,0 chrIII 278660 . A T 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=137;Dels=0.00;FS=5.936;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.430;QD=20.68;ReadPosRankSum=2.919;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2866,345,0 chrIII 278952 . A G 2574 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2607,317,0 chrIII 279149 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.999;DP=156;Dels=0.00;FS=8.854;HaplotypeScore=11.3070;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.219;QD=19.71;ReadPosRankSum=3.380;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:4,152:156:99:3107,351,0 chrIII 279318 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.89;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3525,411,0 chrIII 279350 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.35;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3277,390,0 chrIII 279554 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.70;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2634,303,0 chrIII 279627 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.56;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2808,315,0 chrIII 279859 . T C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.137;QD=17.01;ReadPosRankSum=1.655;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2313,276,0 chrIII 279950 . A G 2933 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2966,348,0 chrIII 280381 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1451,165,0 chrIII 280590 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1797,210,0 chrIII 280971 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.43;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3471,411,0 chrIII 281388 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2656,306,0 chrIII 281666 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.89;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2620,309,0 chrIII 281752 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.91;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2004,228,0 chrIII 281803 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.03;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2657,300,0 chrIII 281823 . A T 2696 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.68;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2729,312,0 chrIII 282441 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.34;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2245,255,0 chrIII 282696 . G A 2270 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.08;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2303,273,0 chrIII 282864 . T C 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=94;Dels=0.00;FS=9.071;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.068;QD=19.36;ReadPosRankSum=2.340;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,88:94:99:1853,216,0 chrIII 282870 . T A 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=4.531;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.984;QD=19.19;ReadPosRankSum=1.614;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1722,207,0 chrIII 282907 . A G 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.102;QD=16.78;ReadPosRankSum=1.579;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1174,135,0 chrIII 283371 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.33;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3392,390,0 chrIII 283431 . G A 4199.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.34;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4199,503,0 chrIII 283701 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3021,357,0 chrIII 283959 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6530;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.99;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2826,327,0 chrIII 284011 . A T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.47;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3684,420,0 chrIII 284050 . A C 3381.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.87;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3381,393,0 chrIII 284053 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.63;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3362,384,0 chrIII 284105 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=16.07;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2138,243,0 chrIII 284130 . G T 1887 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=17.47;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1920,222,0 chrIII 284148 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=17.87;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2070,246,0 chrIII 284172 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4888;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=16.89;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2093,240,0 chrIII 284181 . A T 2065 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=16.65;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2098,246,0 chrIII 284241 . T C 2953 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.4128;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.82;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2986,342,0 chrIII 284278 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.23;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2990,336,0 chrIII 284346 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=24.09;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3301,375,0 chrIII 284448 . T C 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.934;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.121;QD=23.05;ReadPosRankSum=0.846;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2615,265,0 chrIII 284523 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=9.105;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.063;QD=20.28;ReadPosRankSum=2.359;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2811,327,0 chrIII 284526 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.8499;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.62;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2899,327,0 chrIII 284799 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.76;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2491,285,0 chrIII 284830 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.74;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2716,306,0 chrIII 285080 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.27;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2193,252,0 chrIII 285687 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.16;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2742,327,0 chrIII 285783 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.21;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2260,267,0 chrIII 286089 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.71;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1586,186,0 chrIII 286289 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1355,159,0 chrIII 286728 . A G 2957 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2990,359,0 chrIII 287064 . T C 1666 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.07;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1699,195,0 chrIII 287188 . A T 536 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.29;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:569,66,0 chrIII 287328 . C T 1506 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.92;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1539,180,0 chrIII 287526 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=144;Dels=0.00;FS=2.829;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.630;QD=22.26;ReadPosRankSum=2.415;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3238,381,0 chrIII 287614 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=7.870;HaplotypeScore=6.4238;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.961;QD=23.91;ReadPosRankSum=2.406;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4065,471,0 chrIII 287669 . A T 4986.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.32;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4986,570,0 chrIII 287937 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=17.6746;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.41;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2890,327,0 chrIII 288008 . G C 1994 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.21;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2027,237,0 chrIII 288246 . C T 1928 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.23;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1961,225,0 chrIII 288380 . T A 2295 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.28;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2328,270,0 chrIII 288421 . C T 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=3.174;HaplotypeScore=11.3142;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.668;QD=21.12;ReadPosRankSum=0.385;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2314,276,0 chrIII 288455 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.72;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2064,249,0 chrIII 288590 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.13;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1977,225,0 chrIII 288642 . T G 1841 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.01;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1874,219,0 chrIII 288972 . T C 1177 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.57;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1210,147,0 chrIII 289075 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.60;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2150,255,0 chrIII 289278 . T G 2630 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.27;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2663,306,0 chrIII 289475 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.53;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1997,240,0 chrIII 289478 . A G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.761;QD=19.37;ReadPosRankSum=1.667;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2125,243,0 chrIII 289535 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=18.31;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1644,192,0 chrIII 289603 . A T 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=82;Dels=0.00;FS=3.064;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.015;QD=19.52;ReadPosRankSum=2.300;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1634,195,0 chrIII 289636 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.90;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2300,273,0 chrIII 289856 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.40;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2315,264,0 chrIII 289889 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4946;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.69;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2455,294,0 chrIII 289926 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.538;QD=21.23;ReadPosRankSum=1.708;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3069,363,0 chrIII 289944 . A C 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.520;DP=178;Dels=0.00;FS=10.185;HaplotypeScore=7.4359;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.198;QD=20.69;ReadPosRankSum=2.746;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3683,407,0 chrIII 290122 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=187;Dels=0.00;FS=10.357;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.220;QD=21.45;ReadPosRankSum=2.877;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4012,462,0 chrIII 290193 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=21.36;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3632,411,0 chrIII 290208 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=2.627;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.430;QD=19.70;ReadPosRankSum=2.419;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3264,398,0 chrIII 290247 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=4.072;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.376;QD=20.60;ReadPosRankSum=1.690;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3461,399,0 chrIII 290265 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=2.640;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.663;QD=20.00;ReadPosRankSum=2.380;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3540,414,0 chrIII 290295 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=173;Dels=0.00;FS=4.977;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.412;QD=20.68;ReadPosRankSum=1.712;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3577,414,0 chrIII 290390 . A G 1853 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5178;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.82;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1886,231,0 chrIII 290453 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.40;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2558,306,0 chrIII 290561 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=68.2664;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.82;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1251,144,0 chrIII 290689 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=17.14;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1661,201,0 chrIII 290698 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.87;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1712,195,0 chrIII 290765 . G T 1791 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.26;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1824,210,0 chrIII 290783 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.56;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1815,216,0 chrIII 290793 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.11;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2186,249,0 chrIII 290904 . T C 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.678;QD=21.86;ReadPosRankSum=1.694;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2044,240,0 chrIII 290925 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8764;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.92;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2230,258,0 chrIII 291045 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=21.59;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1760,204,0 chrIII 291202 . C A 67.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=90;Dels=0.00;FS=1.618;HaplotypeScore=3.0675;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=2.418;QD=0.75;ReadPosRankSum=-3.033;SB=-2.951e+01 GT:AD:DP:GQ:PL 1/1:84,6:90:12:100,12,0 chrIII 291220 . A G 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.867;HaplotypeScore=74.2433;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;MQRankSum=-1.185;QD=13.39;ReadPosRankSum=1.659;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1305,156,0 chrIII 291244 . T A 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;MQRankSum=-1.429;QD=11.37;ReadPosRankSum=1.631;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1204,138,0 chrIII 291282 . G A 1100 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=11.00;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1133,138,0 chrIII 291416 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=22.69;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1440,168,0 chrIII 291572 . A G 62.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;DP=23;Dels=0.00;FS=14.428;HaplotypeScore=15.0626;MLEAC=1;MLEAF=0.500;MQ=52.54;MQ0=0;MQRankSum=-0.093;QD=2.70;ReadPosRankSum=-0.217;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:13,10:23:92:92,0,125 chrIII 291631 . C T 913 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.29;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:946,108,0 chrIII 291666 . A G 1121 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.98;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1154,132,0 chrIII 291680 . C A 1088 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.09;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1121,126,0 chrIII 291695 . A T 969 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.00;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1002,117,0 chrIII 291746 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=14.38;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:910,102,0 chrIII 291751 . T C 895 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=14.21;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:928,111,0 chrIII 291929 . C T 2495 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.0072;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=22.48;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2528,294,0 chrIII 291969 . T C 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.392;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.793;QD=21.94;ReadPosRankSum=1.603;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2381,279,0 chrIII 292183 . G A 1317 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=51.7915;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.90;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1350,153,0 chrIII 292218 . T G 848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=-0.945;QD=18.84;ReadPosRankSum=1.575;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:99:881,102,0 chrIII 292240 . G A 628 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=16.10;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:661,78,0 chrIII 292249 . C A 608 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=13.51;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:641,78,0 chrIII 292273 . A G 875 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=16.83;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:908,105,0 chrIII 292315 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.54;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1245,144,0 chrIII 292379 . T C 543 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.72;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:66:576,66,0 chrIII 292449 . C T 500 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;QD=17.86;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:66:533,66,0 chrIII 292456 . A T 538 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=15.37;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:69:571,69,0 chrIII 292460 . C T 651 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=16.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:87:684,87,0 chrIII 292484 . T A 958 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=21.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:991,117,0 chrIII 292619 . T G 74.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.31;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:107,12,0 chrIII 292627 . A G 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.31;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:107,12,0 chrIII 292632 . T C 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.31;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:107,12,0 chrIII 292633 . T A 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.94;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:104,12,0 chrIII 292732 . A G 351 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=10.03;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,32:35:45:384,45,0 chrIII 292821 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.75;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1078,123,0 chrIII 292914 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=22.27;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1191,135,0 chrIII 292937 . C T 921 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=21.42;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:954,108,0 chrIII 293006 . A G 860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.377;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=1.644;QD=22.05;ReadPosRankSum=1.644;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:893,102,0 chrIII 293855 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=21.45;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2178,261,0 chrIII 293907 . G T 1731 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=18.61;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1764,201,0 chrIII 293908 . A T 1762 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=18.74;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1795,207,0 chrIII 293909 . A C 1745 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=0.000;QD=18.56;ReadPosRankSum=1.695;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1778,207,0 chrIII 293948 . T C 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2622;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-1.542;QD=16.32;ReadPosRankSum=1.685;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2432,279,0 chrIII 293963 . C A 2719 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.01;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2752,315,0 chrIII 294071 . A G 2429 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.08;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2462,294,0 chrIII 294097 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1902;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.23;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2411,276,0 chrIII 294123 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.67;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2410,276,0 chrIII 294203 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.45;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2387,270,0 chrIII 294389 . A T 2859 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.0203;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=22.87;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2892,339,0 chrIII 294538 . A C 1524.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.659;DP=135;Dels=0.00;FS=81.975;HaplotypeScore=8.6530;MLEAC=1;MLEAF=0.500;MQ=35.24;MQ0=5;MQRankSum=2.396;QD=11.29;ReadPosRankSum=-0.844;SB=-9.320e+02 GT:AD:DP:GQ:PL 0/1:45,88:135:99:1554,0,510 chrIII 294569 . C A 2448 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0201;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=4;QD=18.27;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2481,285,0 chrIII 294593 . T C 2499 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=3;QD=18.93;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2532,288,0 chrIII 294636 . T A 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.685;HaplotypeScore=8.0338;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=0.069;QD=19.39;ReadPosRankSum=1.697;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1972,228,0 chrIII 294725 . A C 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=2.688;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;MQRankSum=0.131;QD=22.08;ReadPosRankSum=2.226;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1490,171,0 chrIII 294803 . T C 1173 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=23.46;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1206,138,0 chrIII 294884 . T C 973 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.62;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1006,117,0 chrIII 294979 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=19.33;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1425,168,0 chrIII 294998 . C T 1006 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=17.65;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1039,120,0 chrIII 295002 . A G 850 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=17.00;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:883,105,0 chrIII 295018 . C G 699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;DP=63;Dels=0.00;FS=15.644;HaplotypeScore=4.9039;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;MQRankSum=3.561;QD=11.10;ReadPosRankSum=2.503;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:16,47:63:87:732,87,0 chrIII 295044 . A G 538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;DP=48;Dels=0.00;FS=13.542;HaplotypeScore=2.9335;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;MQRankSum=2.404;QD=11.21;ReadPosRankSum=-0.368;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:11,37:48:72:571,72,0 chrIII 295057 . G A 616 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.6312;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;QD=13.69;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:649,78,0 chrIII 295069 . C T 737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.462;DP=42;Dels=0.00;FS=16.123;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;MQRankSum=1.923;QD=17.55;ReadPosRankSum=3.037;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:6,36:42:90:770,90,0 chrIII 295130 . C A 1497 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=20.51;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1530,177,0 chrIII 295168 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5115;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=18.43;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1563,192,0 chrIII 295170 . G A 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;MQRankSum=0.169;QD=18.30;ReadPosRankSum=1.495;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1497,180,0 chrIII 295191 . T C 816.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;DP=73;Dels=0.00;FS=4.900;HaplotypeScore=15.6010;MLEAC=1;MLEAF=0.500;MQ=38.60;MQ0=0;MQRankSum=4.001;QD=11.18;ReadPosRankSum=2.356;SB=-2.430e+02 GT:AD:DP:GQ:PL 0/1:20,53:73:99:846,0,170 chrIII 295192 . C T 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.894;DP=75;Dels=0.00;FS=4.840;HaplotypeScore=15.6010;MLEAC=1;MLEAF=0.500;MQ=38.18;MQ0=0;MQRankSum=-4.415;QD=0.36;ReadPosRankSum=-1.815;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:55,20:75:57:57,0,867 chrIII 295215 . C A 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;DP=66;Dels=0.00;FS=9.898;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=35.46;MQ0=0;MQRankSum=-2.941;QD=1.09;ReadPosRankSum=2.141;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,14:66:99:102,0,738 chrIII 295237 . C T 409.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DP=64;Dels=0.00;FS=17.775;HaplotypeScore=16.3812;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=0;MQRankSum=1.021;QD=6.39;ReadPosRankSum=1.396;SB=-1.840e+02 GT:AD:DP:GQ:PL 0/1:27,37:64:99:439,0,105 chrIII 295260 . T G 98.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=39.4854;MLEAC=1;MLEAF=0.500;MQ=29.13;MQ0=0;MQRankSum=1.135;QD=1.81;ReadPosRankSum=2.691;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:39,13:54:99:128,0,318 chrIII 295261 . A G 110.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;DP=52;Dels=0.00;FS=16.579;HaplotypeScore=40.2741;MLEAC=1;MLEAF=0.500;MQ=29.50;MQ0=0;MQRankSum=1.241;QD=2.12;ReadPosRankSum=1.260;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:34,18:52:99:140,0,322 chrIII 295262 . T C 138.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;DP=53;Dels=0.00;FS=1.515;HaplotypeScore=40.2741;MLEAC=1;MLEAF=0.500;MQ=29.31;MQ0=0;MQRankSum=-3.248;QD=2.60;ReadPosRankSum=-0.997;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:38,15:53:99:168,0,311 chrIII 295267 . C A 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;DP=49;Dels=0.00;FS=13.485;HaplotypeScore=30.9525;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=0;MQRankSum=-0.623;QD=2.00;ReadPosRankSum=2.729;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,13:49:99:128,0,355 chrIII 295277 . T A 181.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DP=42;Dels=0.00;FS=12.548;HaplotypeScore=18.4218;MLEAC=1;MLEAF=0.500;MQ=31.78;MQ0=0;MQRankSum=-1.781;QD=4.31;ReadPosRankSum=0.428;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:18,24:42:99:211,0,189 chrIII 295278 . A G 186.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;DP=40;Dels=0.00;FS=22.795;HaplotypeScore=11.5210;MLEAC=1;MLEAF=0.500;MQ=31.50;MQ0=0;MQRankSum=-1.615;QD=4.65;ReadPosRankSum=0.511;SB=-2.187e+02 GT:AD:DP:GQ:PL 0/1:16,24:40:99:216,0,150 chrIII 295280 . T C 193.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;DP=38;Dels=0.00;FS=17.088;HaplotypeScore=20.9733;MLEAC=1;MLEAF=0.500;MQ=31.85;MQ0=0;MQRankSum=1.831;QD=5.08;ReadPosRankSum=1.256;SB=-1.690e+02 GT:AD:DP:GQ:PL 0/1:14,24:38:99:223,0,148 chrIII 295285 . T C 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;DP=39;Dels=0.00;FS=24.760;HaplotypeScore=27.2198;MLEAC=1;MLEAF=0.500;MQ=32.44;MQ0=0;MQRankSum=1.849;QD=3.31;ReadPosRankSum=2.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,10:39:99:159,0,230 chrIII 295287 . T A 221.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.676;DP=37;Dels=0.00;FS=27.029;HaplotypeScore=30.7565;MLEAC=1;MLEAF=0.500;MQ=32.62;MQ0=0;MQRankSum=-1.727;QD=5.97;ReadPosRankSum=-2.069;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:10,27:37:99:251,0,109 chrIII 295289 . C T 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;DP=37;Dels=0.00;FS=32.009;HaplotypeScore=30.7565;MLEAC=1;MLEAF=0.500;MQ=32.62;MQ0=0;MQRankSum=-0.646;QD=1.54;ReadPosRankSum=0.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,8:37:87:87,0,291 chrIII 295294 . C G 89.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.443;DP=36;Dels=0.00;FS=55.383;HaplotypeScore=26.2112;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=0;MQRankSum=-1.181;QD=2.47;ReadPosRankSum=-3.394;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:9,19:36:99:119,0,154 chrIII 295301 . A T 183.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.516;DP=33;Dels=0.00;FS=31.637;HaplotypeScore=20.3194;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;MQRankSum=2.567;QD=5.55;ReadPosRankSum=3.335;SB=2.97 GT:AD:DP:GQ:PL 1/1:24,9:33:24:216,24,0 chrIII 295304 . A G 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;DP=33;Dels=0.00;FS=22.658;HaplotypeScore=20.3194;MLEAC=1;MLEAF=0.500;MQ=33.53;MQ0=0;MQRankSum=-1.130;QD=0.37;ReadPosRankSum=1.481;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,5:33:42:42,0,331 chrIII 295306 . A T 198.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;DP=32;Dels=0.00;FS=28.088;HaplotypeScore=14.8013;MLEAC=1;MLEAF=0.500;MQ=33.92;MQ0=0;MQRankSum=-2.154;QD=6.19;ReadPosRankSum=-4.200;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:8,24:32:99:228,0,157 chrIII 295309 . A C 203.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;DP=32;Dels=0.00;FS=28.088;HaplotypeScore=9.8598;MLEAC=1;MLEAF=0.500;MQ=33.92;MQ0=0;MQRankSum=-2.415;QD=6.34;ReadPosRankSum=-4.200;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:8,24:32:99:233,0,148 chrIII 295311 . A C 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;DP=32;Dels=0.00;FS=24.053;HaplotypeScore=9.8598;MLEAC=1;MLEAF=0.500;MQ=33.92;MQ0=0;MQRankSum=-1.661;QD=0.63;ReadPosRankSum=1.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,5:32:50:50,0,326 chrIII 295314 . A C 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=0;MQRankSum=-1.670;QD=3.15;ReadPosRankSum=-2.927;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,5:13:71:71,0,177 chrIII 295318 . C T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=0;MQRankSum=-1.670;QD=2.54;ReadPosRankSum=-2.927;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,5:13:63:63,0,155 chrIII 295322 . A T 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=0;MQRankSum=-1.670;QD=2.62;ReadPosRankSum=-2.927;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,5:13:64:64,0,170 chrIII 295328 . G T 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=0;MQRankSum=-2.680;QD=1.31;ReadPosRankSum=-2.927;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,5:13:47:47,0,164 chrIII 295331 . T C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=41.94;MQ0=0;MQRankSum=-1.835;QD=1.42;ReadPosRankSum=-2.637;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,4:12:47:47,0,178 chrIII 295441 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=21.30;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1503,180,0 chrIII 295479 . A G 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=4.087;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;MQRankSum=-1.605;QD=22.35;ReadPosRankSum=1.690;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1866,216,0 chrIII 295568 . G T 562 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=45.3119;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=11.47;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:69:595,69,0 chrIII 295603 . C T 571 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=8.16;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:69:604,69,0 chrIII 295606 . C T 538 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;QD=7.69;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:66:571,66,0 chrIII 295639 . G A 901 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=10.73;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:934,108,0 chrIII 295640 . A G 883 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=10.51;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:916,108,0 chrIII 295645 . G A 882 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=9.80;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:915,108,0 chrIII 295728 . G C 1031 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=12.27;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1064,129,0 chrIII 295739 . T C 1134 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=13.83;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1167,135,0 chrIII 295764 . G C 1465 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=18.31;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1498,177,0 chrIII 295871 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=18.16;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:850,99,0 chrIII 295993 . C T 236 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=12.42;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:269,33,0 chrIII 296105 . C T 782 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:93:815,93,0 chrIII 296147 . C T 611 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:75:644,75,0 chrIII 296219 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.75;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1338,153,0 chrIII 296236 . G T 1354 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.91;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1387,165,0 chrIII 296313 . T G 1856 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.42;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1889,219,0 chrIII 296351 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.79;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1651,189,0 chrIII 296406 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.76;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1696,192,0 chrIII 296427 . A G 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=86;Dels=0.00;FS=6.279;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=1.189;QD=20.36;ReadPosRankSum=2.335;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1784,204,0 chrIII 296566 . C A 1406 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=20.99;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1439,165,0 chrIII 296585 . T A 1034 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.68;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1067,123,0 chrIII 296603 . C A 890 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.78;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:923,108,0 chrIII 296655 . C G 754 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=16.76;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:96:787,96,0 chrIII 296689 . C A 876 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=37.40;MQ0=0;QD=17.52;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:909,105,0 chrIII 296738 . C T 208.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=14.86;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:241,27,0 chrIII 296757 . A G 405 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=16.87;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:438,51,0 chrIII 296870 . C A 401 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=17.43;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:434,51,0 chrIII 296914 . G A 551 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=22.04;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:66:584,66,0 chrIII 296948 . A G 764 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.83;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:797,99,0 chrIII 296970 . C T 673 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.69;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:706,81,0 chrIII 296973 . C T 717 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=18.87;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:750,87,0 chrIII 297070 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.03;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1465,180,0 chrIII 297199 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.72;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2291,267,0 chrIII 297307 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=3.424;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.102;QD=21.40;ReadPosRankSum=1.687;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3295,384,0 chrIII 297325 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.35;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2916,350,0 chrIII 297334 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.8322;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=19.01;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2941,336,0 chrIII 297796 . A G 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=23.4435;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.173;QD=18.66;ReadPosRankSum=2.925;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:4,163:168:99:3168,378,0 chrIII 297829 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=17.50;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2500,285,0 chrIII 297844 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=134;Dels=0.00;FS=9.132;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.886;QD=17.68;ReadPosRankSum=2.947;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:3,129:134:99:2402,276,0 chrIII 298056 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.58;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4033,462,0 chrIII 298117 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.69;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3124,372,0 chrIII 298326 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.8087;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.53;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2854,324,0 chrIII 298441 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.19;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2576,306,0 chrIII 298742 . A G 2072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=109;Dels=0.00;FS=7.116;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.289;QD=19.01;ReadPosRankSum=2.334;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,104:109:99:2105,243,0 chrIII 298764 . C T 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.341;QD=20.11;ReadPosRankSum=-1.050;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2607,297,0 chrIII 298878 . C G 2986 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.91;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3019,371,0 chrIII 298949 . A C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=6.583;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.066;QD=21.90;ReadPosRankSum=2.362;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3701,435,0 chrIII 298974 . T A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.26;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3384,384,0 chrIII 299098 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3488,399,0 chrIII 299184 . C A 3178 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.91;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3211,363,0 chrIII 299210 . T C 3152 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.87;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3185,383,0 chrIII 299288 . A G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1267;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.58;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3342,396,0 chrIII 299392 . C A 3050 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.43;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3083,348,0 chrIII 299507 . C A 2015 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.49;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2048,243,0 chrIII 299517 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.86;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1940,219,0 chrIII 299604 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.02;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1231,144,0 chrIII 299617 . T A 1027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.054;QD=16.05;ReadPosRankSum=1.678;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1060,129,0 chrIII 299675 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.88;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1657,192,0 chrIII 299847 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.74;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1941,231,0 chrIII 299871 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=19.97;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1750,198,0 chrIII 299902 . A T 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.854;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;MQRankSum=0.340;QD=14.55;ReadPosRankSum=1.698;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1517,180,0 chrIII 300047 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=18.76;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2022,228,0 chrIII 300051 . T C 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=0.469;QD=17.05;ReadPosRankSum=1.700;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1857,222,0 chrIII 300168 . G T 2459 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.84;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2492,285,0 chrIII 300198 . T A 2173 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.89;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2206,252,0 chrIII 300273 . A G 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.119;QD=20.66;ReadPosRankSum=1.709;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3091,363,0 chrIII 300520 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.50;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2256,270,0 chrIII 300677 . C A 1631 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=20.65;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1664,192,0 chrIII 300695 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.25;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1552,180,0 chrIII 300759 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.92;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1821,210,0 chrIII 300816 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=16.49;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1369,162,0 chrIII 300849 . A T 746 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=10.81;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:87:779,87,0 chrIII 300850 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=10.75;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:87:775,87,0 chrIII 300860 . A G 901 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;QD=10.86;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:934,111,0 chrIII 300865 . T G 847 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.86;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:880,105,0 chrIII 300866 . G A 898 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.51;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:931,105,0 chrIII 300877 . A G 816 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=10.20;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:849,99,0 chrIII 300883 . C T 848 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;QD=10.22;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:881,102,0 chrIII 300933 . C A 1339 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=15.75;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1372,162,0 chrIII 300952 . A T 1578 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.48;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1611,186,0 chrIII 301002 . C A 2368 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.33;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2401,276,0 chrIII 301079 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=20.56;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:2953,333,0 chrIII 301184 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.65;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3465,396,0 chrIII 301212 . G C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9858;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.05;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3326,404,0 chrIII 301242 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.34;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3396,393,0 chrIII 301423 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.22;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2301,261,0 chrIII 301448 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.98;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1969,231,0 chrIII 301452 . A G 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.917;QD=18.92;ReadPosRankSum=1.698;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1963,231,0 chrIII 301526 . A G 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-1.155;QD=21.32;ReadPosRankSum=1.691;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1824,216,0 chrIII 301609 . A C 2322 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.91;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2355,270,0 chrIII 301654 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.58;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2234,258,0 chrIII 301727 . A G 2029 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=22.30;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2062,240,0 chrIII 301738 . A C 1891 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=18.18;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1924,234,0 chrIII 301748 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=17.16;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1818,216,0 chrIII 301769 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=16.00;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1729,207,0 chrIII 301864 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.22;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2560,300,0 chrIII 301887 . A C 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=127;Dels=0.00;FS=6.024;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.686;QD=19.66;ReadPosRankSum=2.944;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:3,122:127:99:2530,291,0 chrIII 301917 . T C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=126;Dels=0.00;FS=8.859;HaplotypeScore=9.7268;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.048;QD=19.61;ReadPosRankSum=1.975;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:4,119:126:99:2504,305,0 chrIII 302092 . T A 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.065;QD=20.25;ReadPosRankSum=1.654;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2726,309,0 chrIII 302096 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=140;Dels=0.00;FS=6.373;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.097;QD=18.41;ReadPosRankSum=2.326;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2611,300,0 chrIII 302230 . G T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.67;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3252,366,0 chrIII 302243 . C A 2774 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.84;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2807,324,0 chrIII 302324 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=3.255;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.878;QD=21.47;ReadPosRankSum=1.708;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3168,363,0 chrIII 302465 . A G 1828 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.77;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1861,216,0 chrIII 302475 . T G 1818 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.43;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1851,213,0 chrIII 302586 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=16.0631;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.88;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2129,243,0 chrIII 302608 . C G 1662 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.79;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1695,198,0 chrIII 302630 . C G 1374 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.63;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1407,165,0 chrIII 302759 . C G 1891 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.36;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1924,228,0 chrIII 302768 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=17.39;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1789,216,0 chrIII 302927 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7659;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.01;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1945,234,0 chrIII 302979 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=21.68;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1312,150,0 chrIII 302988 . G A 1134 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=19.22;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1167,135,0 chrIII 303055 . T C 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=65;Dels=0.00;FS=5.342;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.506;QD=16.94;ReadPosRankSum=1.679;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1134,129,0 chrIII 303080 . C A 1294 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4573;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=17.49;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1327,159,0 chrIII 303123 . G C 1395 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=20.82;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1428,165,0 chrIII 303175 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=23.43;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1134,129,0 chrIII 303216 . T C 1350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.131;QD=20.45;ReadPosRankSum=2.375;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1383,165,0 chrIII 303272 . C T 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.692;QD=20.67;ReadPosRankSum=1.208;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1831,213,0 chrIII 303294 . G C 1686 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.62;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1719,201,0 chrIII 303472 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.08;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2572,294,0 chrIII 303499 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=21.09;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2184,249,0 chrIII 303721 . C T 984 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=19.29;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1017,114,0 chrIII 303728 . G A 840 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;QD=17.87;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:873,102,0 chrIII 303749 . G A 583 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=16.19;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:72:616,72,0 chrIII 303754 . A G 649 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=-1.369;QD=16.64;ReadPosRankSum=2.324;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,37:39:81:682,81,0 chrIII 303762 . C G 617 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:78:650,78,0 chrIII 303775 . A C 724 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.030;QD=17.24;ReadPosRankSum=2.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,40:42:87:757,87,0 chrIII 303780 . C A 786 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:93:819,93,0 chrIII 303791 . T A 758 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:90:791,90,0 chrIII 303795 . C T 741 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:90:774,90,0 chrIII 303817 . G C 790 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=12.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:96:823,96,0 chrIII 303851 . G A 782 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=12.61;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:93:815,93,0 chrIII 303853 . C T 754 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=12.16;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:90:787,90,0 chrIII 303862 . A G 610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;MQRankSum=0.803;QD=10.17;ReadPosRankSum=2.368;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:2,58:60:75:643,75,0 chrIII 303878 . T C 409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.514;DP=41;Dels=0.00;FS=19.138;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;MQRankSum=-0.938;QD=9.98;ReadPosRankSum=-1.422;SB=-1.601e+01 GT:AD:DP:GQ:PL 1/1:2,39:41:51:442,51,0 chrIII 303884 . C T 362 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=10.65;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:48:395,48,0 chrIII 303922 . G A 92.26 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=0;QD=3.55;SB=-1.522e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:15:125,15,0 chrIII 303979 . G A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=0;QD=2.92;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:70,9,0 chrIII 303980 . G A 51.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=0;MQRankSum=0.295;QD=3.43;ReadPosRankSum=1.591;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:6,9:15:7:81,0,7 chrIII 303984 . A T 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.58;MQ0=0;QD=6.08;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:124,15,0 chrIII 303985 . A C 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.58;MQ0=0;QD=6.02;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:123,15,0 chrIII 304001 . G T 87.26 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=7;QD=2.30;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:15:120,15,0 chrIII 304019 . T C 242 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.678;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=20.84;MQ0=11;MQRankSum=-2.278;QD=4.65;ReadPosRankSum=2.829;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:3,49:52:33:275,33,0 chrIII 304102 . A G 1504 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=141;Dels=0.00;FS=7.782;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=26;MQRankSum=0.881;QD=10.67;ReadPosRankSum=1.671;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:1537,177,0 chrIII 304103 . G A 1566 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=26;QD=11.11;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,138:141:99:1599,177,0 chrIII 304160 . T C 827.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;DP=113;Dels=0.00;FS=61.100;HaplotypeScore=2.7085;MLEAC=1;MLEAF=0.500;MQ=29.91;MQ0=20;MQRankSum=3.036;QD=7.32;ReadPosRankSum=1.001;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:37,75:113:36:857,0,36 chrIII 304194 . T C 1127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.645;DP=118;Dels=0.00;FS=14.371;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=25;MQRankSum=-2.797;QD=9.55;ReadPosRankSum=1.301;SB=-4.010e+02 GT:AD:DP:GQ:PL 0/1:29,89:118:99:1157,0,251 chrIII 304198 . G T 1754 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=26;QD=15.39;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1787,213,0 chrIII 304205 . A G 1275 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.593;DP=104;Dels=0.00;FS=3.126;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=26;MQRankSum=0.091;QD=12.26;ReadPosRankSum=0.593;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,101:104:99:1308,149,0 chrIII 304236 . T G 1122 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=8.3104;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=23;QD=11.33;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1155,146,0 chrIII 304299 . C T 1162 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.986;DP=120;Dels=0.00;FS=2.283;HaplotypeScore=76.5499;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=6;MQRankSum=-0.355;QD=9.68;ReadPosRankSum=1.118;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:6,112:120:99:1195,147,0 chrIII 304326 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=3;QD=15.14;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1865,219,0 chrIII 304357 . T A 747.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;DP=92;Dels=0.00;FS=46.057;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=2;MQRankSum=1.341;QD=8.12;ReadPosRankSum=-1.714;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:32,60:92:99:777,0,413 chrIII 304409 . A G 835 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=69.6765;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=9;QD=9.49;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:868,99,0 chrIII 304425 . C T 1184 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=8;QD=11.96;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1217,138,0 chrIII 304461 . G A 406 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=5;QD=5.27;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:51:439,51,0 chrIII 304473 . T C 477 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=26.33;MQ0=4;MQRankSum=-1.169;QD=5.68;ReadPosRankSum=1.689;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:63:510,63,0 chrIII 304480 . G T 265.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=26.76;MQ0=3;MQRankSum=-1.298;QD=3.40;ReadPosRankSum=3.568;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:25,53:78:99:295,0,187 chrIII 304481 . C T 575 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=26.73;MQ0=3;QD=7.47;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:69:608,69,0 chrIII 304488 . C T 609 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=2;QD=7.52;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:72:642,72,0 chrIII 304508 . C T 479 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=1;QD=7.48;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:60:512,60,0 chrIII 304513 . C T 445 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=1;QD=7.42;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:57:478,57,0 chrIII 304514 . G A 446 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=1;QD=7.43;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:57:479,57,0 chrIII 304517 . T C 451 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.401;DP=60;Dels=0.00;FS=3.696;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=1;MQRankSum=1.252;QD=7.52;ReadPosRankSum=5.301;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:13,47:60:57:484,57,0 chrIII 304519 . C T 472 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=9.25;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:57:505,57,0 chrIII 304520 . G T 430 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;QD=8.27;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:54:463,54,0 chrIII 304521 . G A 450 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=8.18;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:57:483,57,0 chrIII 304523 . G T 466 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=7.77;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:57:499,57,0 chrIII 304586 . G A 255.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.823;DP=206;Dels=0.00;FS=4.478;HaplotypeScore=5.2392;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=2;MQRankSum=5.544;QD=1.24;ReadPosRankSum=-3.447;SB=-4.900e+02 GT:AD:DP:GQ:PL 0/1:89,116:206:99:285,0,394 chrIII 304598 . C T 652.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DP=256;Dels=0.00;FS=6.860;HaplotypeScore=5.0701;MLEAC=1;MLEAF=0.500;MQ=24.29;MQ0=2;MQRankSum=6.785;QD=2.55;ReadPosRankSum=-1.806;SB=-5.460e+02 GT:AD:DP:GQ:PL 0/1:87,169:256:99:682,0,272 chrIII 304601 . T C 767.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.332;DP=278;Dels=0.00;FS=13.741;HaplotypeScore=11.3795;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=2;MQRankSum=6.256;QD=2.76;ReadPosRankSum=0.351;SB=-6.990e+02 GT:AD:DP:GQ:PL 0/1:98,180:278:99:797,0,300 chrIII 304605 . G A 874.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.874;DP=308;Dels=0.00;FS=11.709;HaplotypeScore=12.7243;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=2;MQRankSum=8.296;QD=2.84;ReadPosRankSum=-0.782;SB=-8.356e+02 GT:AD:DP:GQ:PL 0/1:92,213:308:99:904,0,256 chrIII 304608 . C A 1249.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.295;DP=326;Dels=0.00;FS=24.190;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=2;MQRankSum=8.751;QD=3.83;ReadPosRankSum=-0.253;SB=-1.069e+03 GT:AD:DP:GQ:PL 0/1:94,230:326:99:1279,0,221 chrIII 304703 . C T 7847.01 filter AC=2;AF=1.00;AN=2;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=7.4761;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=34;QD=20.38;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,385:385:99:7847,900,0 chrIII 304732 . T C 5023.01 filter AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=49;QD=17.14;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,291:293:99:5023,605,0 chrIII 304825 . G C 5601.01 filter AC=2;AF=1.00;AN=2;DP=498;Dels=0.00;FS=0.000;HaplotypeScore=20.4392;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=62;QD=11.25;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,493:498:99:5601,648,0 chrIII 304919 . G C 493.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;DP=436;Dels=0.00;FS=9.202;HaplotypeScore=23.6694;MLEAC=1;MLEAF=0.500;MQ=37.70;MQ0=31;MQRankSum=-3.733;QD=1.13;ReadPosRankSum=3.861;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:349,84:436:99:523,0,5101 chrIII 304990 . C T 2412 filter AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=12.0058;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=79;QD=9.31;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:2445,279,0 chrIII 305002 . T C 1244 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=241;Dels=0.00;FS=6.836;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=99;MQRankSum=-2.362;QD=5.16;ReadPosRankSum=2.415;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:2,237:241:99:1277,147,0 chrIII 305021 . C T 1533 filter AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=1.4725;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=95;QD=5.59;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,274:274:99:1566,189,0 chrIII 305033 . A G 1482 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.800;DP=265;Dels=0.00;FS=12.288;HaplotypeScore=3.1207;MLEAC=2;MLEAF=1.00;MQ=19.27;MQ0=94;MQRankSum=-1.930;QD=5.59;ReadPosRankSum=3.800;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:5,260:265:99:1515,177,0 chrIII 305048 . C T 1749 filter AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=89;QD=5.73;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:1782,219,0 chrIII 305066 . C A 2520 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.660;DP=317;Dels=0.00;FS=2.265;HaplotypeScore=12.0941;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=105;MQRankSum=-0.976;QD=7.95;ReadPosRankSum=-0.938;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:3,312:317:99:2553,281,0 chrIII 305105 . T C 3881.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=13.1811;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=108;MQRankSum=-1.732;QD=12.09;ReadPosRankSum=1.716;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,319:321:99:3881,453,0 chrIII 305151 . G A 4018.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.358;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=31.5957;MLEAC=1;MLEAF=0.500;MQ=28.33;MQ0=101;MQRankSum=1.411;QD=10.17;ReadPosRankSum=-0.782;SB=-5.460e+02 GT:AD:DP:GQ:PL 0/1:91,304:395:99:4018,0,828 chrIII 305369 . A G 3939.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.932;DP=524;Dels=0.00;FS=0.315;HaplotypeScore=29.4352;MLEAC=1;MLEAF=0.500;MQ=42.12;MQ0=5;MQRankSum=-0.256;QD=7.52;ReadPosRankSum=-1.194;SB=-2.078e+03 GT:AD:DP:GQ:PL 0/1:269,255:524:99:3939,0,4615 chrIII 305435 . C A 1824.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.593;DP=535;Dels=0.00;FS=4.051;HaplotypeScore=24.7244;MLEAC=1;MLEAF=0.500;MQ=53.11;MQ0=6;MQRankSum=2.515;QD=3.41;ReadPosRankSum=-2.608;SB=-7.770e+02 GT:AD:DP:GQ:PL 0/1:380,154:535:99:1854,0,5784 chrIII 305490 . C A 8249.01 filter AC=2;AF=1.00;AN=2;DP=469;Dels=0.00;FS=0.000;HaplotypeScore=36.5212;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=38;QD=17.59;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,464:468:99:8249,956,0 chrIII 305522 . A G 7373.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.654;DP=416;Dels=0.00;FS=0.000;HaplotypeScore=20.6113;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=39;MQRankSum=-3.388;QD=17.72;ReadPosRankSum=3.823;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:5,410:416:99:7373,855,0 chrIII 305548 . A G 6512.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=25;MQRankSum=-2.144;QD=18.77;ReadPosRankSum=3.434;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:4,342:347:99:6512,762,0 chrIII 305563 . G A 5735.01 filter AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=15;QD=19.78;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,290:290:99:5735,669,0 chrIII 305662 . T C 1745 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.645;DP=197;Dels=0.00;FS=52.729;HaplotypeScore=13.0766;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=89;MQRankSum=-2.279;QD=8.86;ReadPosRankSum=2.933;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,190:197:99:1778,224,0 chrIII 305691 . A G 261.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DP=132;Dels=0.00;FS=23.134;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=75;MQRankSum=3.681;QD=1.98;ReadPosRankSum=2.539;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:90,42:132:99:291,0,445 chrIII 305728 . G A 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=19.95;MQ0=14;MQRankSum=2.604;QD=2.95;ReadPosRankSum=0.587;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:30,30:60:62:207,0,62 chrIII 305737 . C T 349 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=22.18;MQ0=5;QD=5.45;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:45:382,45,0 chrIII 305747 . G C 504 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=22.47;MQ0=3;QD=6.46;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:63:537,63,0 chrIII 305763 . A G 381 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=3;QD=4.19;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:48:414,48,0 chrIII 305778 . C G 336 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=11;QD=3.43;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:42:369,42,0 chrIII 305787 . C T 245 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=19.15;MQ0=25;QD=2.21;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,109:111:33:278,33,0 chrIII 305797 . A C 230 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=18.14;MQ0=33;QD=2.05;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,112:112:30:263,30,0 chrIII 305821 . A C 93.26 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=63;QD=0.86;SB=-2.627e+01 GT:AD:DP:GQ:PL 1/1:0,108:108:15:126,15,0 chrIII 305892 . G A 101.26 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.15;MQ0=29;QD=2.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:15:134,15,0 chrIII 305911 . T C 74.51 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.05;MQ0=5;QD=8.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:9:12:107,12,0 chrIII 305924 . T C 223 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=32;Dels=0.00;FS=14.314;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=5;MQRankSum=-1.733;QD=6.97;ReadPosRankSum=1.476;SB=-1.516e-02 GT:AD:DP:GQ:PL 1/1:1,31:32:30:256,30,0 chrIII 305960 . G A 1016 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.84;MQ0=25;QD=7.31;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,136:139:99:1049,126,0 chrIII 306037 . C T 971 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=57;QD=8.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:1004,117,0 chrIII 306048 . C T 935 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=47;QD=8.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:968,111,0 chrIII 306064 . T C 817 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=41;QD=7.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:96:850,96,0 chrIII 306125 . A T 467 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.57;MQ0=13;QD=2.94;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,159:159:57:500,57,0 chrIII 306130 . A G 550 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=22.04;MQ0=9;MQRankSum=-0.930;QD=3.42;ReadPosRankSum=2.417;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:2,159:161:66:583,66,0 chrIII 306132 . G A 680 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=10;QD=4.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,160:160:81:713,81,0 chrIII 306149 . T G 1003 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.066;DP=219;Dels=0.00;FS=2.202;HaplotypeScore=7.5270;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=14;MQRankSum=-2.256;QD=4.58;ReadPosRankSum=4.830;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:9,210:219:99:1036,129,0 chrIII 306150 . G A 1020 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.953;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.0497;MLEAC=2;MLEAF=1.00;MQ=24.71;MQ0=14;MQRankSum=-1.769;QD=4.62;ReadPosRankSum=3.974;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:6,213:221:99:1053,120,0 chrIII 306490 . T G 8692.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.108;DP=417;Dels=0.00;FS=0.000;HaplotypeScore=15.1706;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.056;QD=20.84;ReadPosRankSum=1.011;SB=-4.367e+03 GT:AD:DP:GQ:PL 1/1:2,414:417:99:8692,1028,0 chrIII 306514 . C T 9602.01 filter AC=2;AF=1.00;AN=2;DP=442;Dels=0.00;FS=0.000;HaplotypeScore=7.7119;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.72;SB=-4.485e+03 GT:AD:DP:GQ:PL 1/1:0,441:442:99:9602,1086,0 chrIII 306575 . C T 8765.01 filter AC=2;AF=1.00;AN=2;DP=416;Dels=0.00;FS=0.000;HaplotypeScore=37.9469;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=21.07;SB=-4.442e+03 GT:AD:DP:GQ:PL 1/1:0,415:416:99:8765,1005,0 chrIII 306610 . G A 8752.01 filter AC=2;AF=1.00;AN=2;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=16.8356;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=21.93;SB=-4.993e+03 GT:AD:DP:GQ:PL 1/1:0,396:399:99:8752,981,0 chrIII 306626 . T C 7995.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=384;Dels=0.00;FS=6.427;HaplotypeScore=8.5687;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=-0.157;QD=20.82;ReadPosRankSum=2.385;SB=-4.426e+03 GT:AD:DP:GQ:PL 1/1:2,381:384:99:7995,935,0 chrIII 306731 . A G 8063.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=374;Dels=0.00;FS=2.997;HaplotypeScore=9.6980;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-0.660;QD=21.56;ReadPosRankSum=2.436;SB=-4.374e+03 GT:AD:DP:GQ:PL 1/1:2,368:374:99:8063,930,0 chrIII 306736 . T G 7842.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=364;Dels=0.00;FS=12.554;HaplotypeScore=11.9256;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=0.635;QD=21.54;ReadPosRankSum=3.404;SB=-4.352e+03 GT:AD:DP:GQ:PL 1/1:4,359:364:99:7842,909,0 chrIII 306817 . G A 7061.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=22.70;SB=-3.453e+03 GT:AD:DP:GQ:PL 1/1:0,311:311:99:7061,810,0 chrIII 306856 . G C 6920.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;QD=22.11;SB=-3.457e+03 GT:AD:DP:GQ:PL 1/1:0,311:313:99:6920,809,0 chrIII 306902 . A G 5485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;MQRankSum=-0.822;QD=21.51;ReadPosRankSum=1.718;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5485,665,0 chrIII 306915 . G T 4836.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=19.74;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:4836,601,0 chrIII 306920 . A G 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;MQRankSum=-1.340;QD=20.91;ReadPosRankSum=2.285;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,237:241:99:5039,614,0 chrIII 306928 . C A 4317.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=19.36;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4317,515,0 chrIII 306992 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.9691;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=21.69;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3470,396,0 chrIII 307015 . A T 2945 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2461;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=0;MQRankSum=-2.232;QD=20.03;ReadPosRankSum=2.399;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2978,351,0 chrIII 307017 . A G 2668 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.353;DP=142;Dels=0.00;FS=33.690;HaplotypeScore=6.6687;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;MQRankSum=-1.782;QD=18.79;ReadPosRankSum=3.907;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:6,135:142:99:2701,285,0 chrIII 307020 . A T 2693 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.991;DP=135;Dels=0.00;FS=55.776;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;MQRankSum=0.876;QD=19.95;ReadPosRankSum=3.393;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:4,131:135:99:2726,240,0 chrIII 307021 . A C 2559 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.680;DP=135;Dels=0.00;FS=55.776;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;MQRankSum=-0.564;QD=18.96;ReadPosRankSum=3.393;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:4,131:135:99:2592,230,0 chrIII 307039 . A T 2108 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=0.917;QD=15.28;ReadPosRankSum=2.414;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2141,269,0 chrIII 307072 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=11.17;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1440,171,0 chrIII 307081 . A G 1167 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=106;Dels=0.02;FS=0.000;HaplotypeScore=3.6951;MLEAC=2;MLEAF=1.00;MQ=25.23;MQ0=0;MQRankSum=-0.680;QD=11.01;ReadPosRankSum=2.933;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1200,147,0 chrIII 307086 . T A 970 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=24.58;MQ0=0;QD=10.90;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1003,123,0 chrIII 307088 . A G 927 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=24.58;MQ0=0;MQRankSum=-0.487;QD=10.42;ReadPosRankSum=1.693;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:960,120,0 chrIII 307138 . C T 214 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8078;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=2;QD=1.96;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:30:247,30,0 chrIII 307148 . C T 205.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;DP=121;Dels=0.00;FS=11.663;HaplotypeScore=5.5881;MLEAC=1;MLEAF=0.500;MQ=20.85;MQ0=2;MQRankSum=0.430;QD=1.70;ReadPosRankSum=3.821;SB=-5.071e+02 GT:AD:DP:GQ:PL 0/1:14,107:121:11:235,0,11 chrIII 307158 . A T 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;DP=137;Dels=0.00;FS=11.425;HaplotypeScore=7.3494;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=2;MQRankSum=0.854;QD=0.15;ReadPosRankSum=-1.623;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,16:137:50:50,0,300 chrIII 307162 . T G 321.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;DP=135;Dels=0.00;FS=11.363;HaplotypeScore=5.3220;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=2;MQRankSum=-0.239;QD=2.38;ReadPosRankSum=1.172;SB=-5.220e+02 GT:AD:DP:GQ:PL 0/1:17,118:135:68:351,0,68 chrIII 307165 . A C 327.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.787;DP=137;Dels=0.00;FS=11.363;HaplotypeScore=6.8993;MLEAC=1;MLEAF=0.500;MQ=21.60;MQ0=2;MQRankSum=0.398;QD=2.39;ReadPosRankSum=0.287;SB=-5.270e+02 GT:AD:DP:GQ:PL 0/1:19,118:137:65:357,0,65 chrIII 307178 . T C 334.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;DP=127;Dels=0.00;FS=9.096;HaplotypeScore=22.6042;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=3;MQRankSum=0.730;QD=2.63;ReadPosRankSum=-0.934;SB=-3.430e+02 GT:AD:DP:GQ:PL 0/1:22,105:127:99:364,0,102 chrIII 307179 . C A 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=128;Dels=0.00;FS=5.243;HaplotypeScore=22.6042;MLEAC=1;MLEAF=0.500;MQ=21.57;MQ0=3;MQRankSum=1.881;QD=0.17;ReadPosRankSum=-0.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,27:128:52:52,0,400 chrIII 307182 . T A 511 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=21.7375;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=3;MQRankSum=2.246;QD=3.99;ReadPosRankSum=1.011;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:6,122:128:46:544,46,0 chrIII 307225 . G A 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.769;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=23.08;MQ0=6;MQRankSum=0.851;QD=2.84;ReadPosRankSum=0.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,22:43:99:152,0,149 chrIII 307226 . C T 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=6;MQRankSum=0.827;QD=2.74;ReadPosRankSum=0.243;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,22:42:99:145,0,146 chrIII 307228 . T A 119.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=6;MQRankSum=0.081;QD=2.83;ReadPosRankSum=0.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,22:42:99:149,0,144 chrIII 307233 . C G 238 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=6.7523;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=6;QD=6.26;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:33:271,33,0 chrIII 307239 . T G 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=7.7257;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=6;MQRankSum=1.115;QD=1.28;ReadPosRankSum=-1.197;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:14,11:25:59:62,0,59 chrIII 307241 . T C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.287;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=7.7257;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=6;MQRankSum=-0.694;QD=0.92;ReadPosRankSum=0.509;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:11,14:25:53:53,0,62 chrIII 307245 . T A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=6;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.156;SB=1.980e-03 GT:AD:DP:GQ:PL 0/1:9,11:20:41:41,0,42 chrIII 307310 . G A 2946 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=8;QD=15.03;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,194:196:99:2979,365,0 chrIII 307317 . T C 2369.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;DP=245;Dels=0.00;FS=25.693;HaplotypeScore=13.4989;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=12;MQRankSum=4.076;QD=9.67;ReadPosRankSum=2.630;SB=-7.030e+02 GT:AD:DP:GQ:PL 0/1:47,198:245:40:2399,0,40 chrIII 307325 . G A 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.060;DP=269;Dels=0.00;FS=18.560;HaplotypeScore=6.5102;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=15;MQRankSum=-1.278;QD=0.20;ReadPosRankSum=-0.872;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:219,50:269:84:84,0,2451 chrIII 307368 . A G 1983.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.837;DP=297;Dels=0.00;FS=3.358;HaplotypeScore=18.7347;MLEAC=1;MLEAF=0.500;MQ=20.53;MQ0=19;MQRankSum=-1.357;QD=6.68;ReadPosRankSum=-0.242;SB=-7.790e+02 GT:AD:DP:GQ:PL 0/1:70,227:297:99:2013,0,491 chrIII 307376 . A T 1319.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.316;DP=240;Dels=0.00;FS=9.035;HaplotypeScore=5.4365;MLEAC=1;MLEAF=0.500;MQ=18.84;MQ0=19;MQRankSum=-2.940;QD=5.50;ReadPosRankSum=0.446;SB=-6.480e+02 GT:AD:DP:GQ:PL 0/1:52,188:240:99:1349,0,414 chrIII 307413 . G A 687.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.761;DP=222;Dels=0.00;FS=1.409;HaplotypeScore=14.0073;MLEAC=1;MLEAF=0.500;MQ=17.27;MQ0=10;MQRankSum=-1.477;QD=3.09;ReadPosRankSum=-0.821;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:60,160:221:99:717,0,288 chrIII 307416 . C T 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;DP=222;Dels=0.00;FS=3.872;HaplotypeScore=18.0054;MLEAC=1;MLEAF=0.500;MQ=17.07;MQ0=10;MQRankSum=2.374;QD=0.54;ReadPosRankSum=0.037;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,48:222:99:150,0,744 chrIII 307421 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.407;DP=225;Dels=0.00;FS=7.047;HaplotypeScore=25.2048;MLEAC=1;MLEAF=0.500;MQ=16.70;MQ0=7;MQRankSum=-0.366;QD=0.22;ReadPosRankSum=1.728;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,47:225:79:79,0,572 chrIII 307431 . C A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.012;DP=184;Dels=0.00;FS=1.334;HaplotypeScore=11.0347;MLEAC=1;MLEAF=0.500;MQ=13.95;MQ0=1;MQRankSum=-0.214;QD=0.22;ReadPosRankSum=0.118;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:141,43:184:71:71,0,99 chrIII 307432 . A G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.827;DP=180;Dels=0.00;FS=17.588;HaplotypeScore=10.9913;MLEAC=1;MLEAF=0.500;MQ=14.10;MQ0=1;MQRankSum=-2.102;QD=0.24;ReadPosRankSum=1.565;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:49,131:180:73:73,0,81 chrIII 307455 . T A 162.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.814;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.49;MQ0=2;MQRankSum=-2.905;QD=0.80;ReadPosRankSum=0.754;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:3,199:202:44:192,0,44 chrIII 307456 . C T 143.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.49;MQ0=2;MQRankSum=-2.714;QD=0.71;ReadPosRankSum=0.784;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:3,199:202:39:173,0,39 chrIII 307465 . C T 208.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=36.3687;MLEAC=1;MLEAF=0.500;MQ=13.98;MQ0=6;MQRankSum=-2.685;QD=0.92;ReadPosRankSum=1.388;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:3,223:226:39:238,0,39 chrIII 307511 . C G 1315.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;DP=225;Dels=0.00;FS=1.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.92;MQ0=11;MQRankSum=3.034;QD=5.84;ReadPosRankSum=0.973;SB=-2.373e-02 GT:AD:DP:GQ:PL 0/1:59,166:225:21:1345,0,21 chrIII 307515 . T A 1358.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.730;DP=194;Dels=0.00;FS=14.450;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.77;MQ0=14;MQRankSum=4.390;QD=7.00;ReadPosRankSum=2.740;SB=-1.739e-02 GT:AD:DP:GQ:PL 0/1:60,134:194:23:1388,0,23 chrIII 307516 . G A 1296.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DP=194;Dels=0.00;FS=12.184;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.77;MQ0=14;MQRankSum=4.619;QD=6.68;ReadPosRankSum=2.737;SB=-9.252e-03 GT:AD:DP:GQ:PL 0/1:60,134:194:29:1326,0,29 chrIII 307517 . A G 1295.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490;DP=192;Dels=0.00;FS=7.248;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.84;MQ0=14;MQRankSum=4.200;QD=6.74;ReadPosRankSum=2.254;SB=-1.197e-02 GT:AD:DP:GQ:PL 0/1:58,134:192:26:1325,0,26 chrIII 307519 . T C 1372.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.853;DP=189;Dels=0.00;FS=3.063;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=14;MQRankSum=3.687;QD=7.26;ReadPosRankSum=1.520;SB=-1.739e-02 GT:AD:DP:GQ:PL 0/1:55,134:189:23:1402,0,23 chrIII 307520 . G C 1371.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.185;DP=188;Dels=0.00;FS=1.901;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.99;MQ0=14;MQRankSum=4.126;QD=7.29;ReadPosRankSum=1.221;SB=-2.818e-02 GT:AD:DP:GQ:PL 0/1:54,134:188:20:1401,0,20 chrIII 307524 . T G 1342.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.096;DP=209;Dels=0.00;FS=0.942;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.76;MQ0=23;MQRankSum=3.988;QD=6.42;ReadPosRankSum=-0.279;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:54,155:209:25:1372,0,25 chrIII 307531 . A G 1749 filter AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.24;MQ0=29;QD=7.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:1782,221,0 chrIII 307547 . A G 1653 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=42;QD=7.72;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,214:214:99:1686,209,0 chrIII 307548 . C T 1730 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=42;QD=8.08;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,214:214:99:1763,210,0 chrIII 307584 . C A 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.897;DP=214;Dels=0.00;FS=27.596;HaplotypeScore=34.3761;MLEAC=1;MLEAF=0.500;MQ=14.41;MQ0=81;MQRankSum=1.075;QD=0.32;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,30:214:98:98,0,341 chrIII 307595 . A T 363 filter AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.0415;MLEAC=2;MLEAF=1.00;MQ=13.41;MQ0=86;QD=1.61;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,225:226:48:396,48,0 chrIII 307623 . T C 291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.951;DP=408;Dels=0.00;FS=154.868;HaplotypeScore=52.5636;MLEAC=1;MLEAF=0.500;MQ=15.31;MQ0=64;MQRankSum=-4.958;QD=0.71;ReadPosRankSum=2.476;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:155,252:408:99:321,0,247 chrIII 307630 . G A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.447;DP=420;Dels=0.00;FS=429.055;HaplotypeScore=57.0255;MLEAC=1;MLEAF=0.500;MQ=15.36;MQ0=61;MQRankSum=5.742;QD=0.11;ReadPosRankSum=-6.940;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:330,89:420:77:77,0,596 chrIII 307678 . T C 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.318;DP=373;Dels=0.00;FS=539.161;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=16.57;MQ0=49;MQRankSum=6.812;QD=0.17;ReadPosRankSum=-5.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:274,98:373:92:92,0,423 chrIII 307679 . G A 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.152;DP=373;Dels=0.00;FS=530.916;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=16.57;MQ0=49;MQRankSum=7.008;QD=0.19;ReadPosRankSum=-4.038;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:275,98:373:99:99,0,418 chrIII 307681 . T C 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.288;DP=377;Dels=0.00;FS=514.505;HaplotypeScore=15.8605;MLEAC=1;MLEAF=0.500;MQ=16.64;MQ0=48;MQRankSum=6.700;QD=0.16;ReadPosRankSum=-1.480;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:278,97:376:92:92,0,443 chrIII 307685 . A C 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;DP=378;Dels=0.00;FS=548.045;HaplotypeScore=31.6229;MLEAC=1;MLEAF=0.500;MQ=16.62;MQ0=49;MQRankSum=6.923;QD=0.19;ReadPosRankSum=1.788;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:277,101:378:99:101,0,410 chrIII 307686 . G C 88.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;DP=374;Dels=0.00;FS=531.849;HaplotypeScore=36.3550;MLEAC=1;MLEAF=0.500;MQ=16.68;MQ0=50;MQRankSum=6.658;QD=0.24;ReadPosRankSum=1.871;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:268,101:374:99:118,0,425 chrIII 307690 . G A 128.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.733;DP=360;Dels=0.00;FS=430.372;HaplotypeScore=47.4346;MLEAC=1;MLEAF=0.500;MQ=16.82;MQ0=53;MQRankSum=5.063;QD=0.36;ReadPosRankSum=4.845;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:252,108:360:99:158,0,393 chrIII 307691 . A G 132.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.341;DP=353;Dels=0.00;FS=522.074;HaplotypeScore=41.9139;MLEAC=1;MLEAF=0.500;MQ=16.92;MQ0=54;MQRankSum=6.252;QD=0.37;ReadPosRankSum=6.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:252,101:353:99:162,0,377 chrIII 307696 . C T 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;DP=353;Dels=0.00;FS=531.021;HaplotypeScore=29.2081;MLEAC=1;MLEAF=0.500;MQ=17.23;MQ0=60;MQRankSum=4.398;QD=0.35;ReadPosRankSum=3.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,141:353:99:152,0,322 chrIII 307697 . G T 261.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.543;DP=347;Dels=0.00;FS=501.954;HaplotypeScore=24.4760;MLEAC=1;MLEAF=0.500;MQ=17.23;MQ0=60;MQRankSum=-4.271;QD=0.75;ReadPosRankSum=-3.617;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:141,203:347:99:291,0,160 chrIII 307741 . G A 1071 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.824;DP=388;Dels=0.00;FS=222.658;HaplotypeScore=20.0390;MLEAC=2;MLEAF=1.00;MQ=14.34;MQ0=179;MQRankSum=4.921;QD=2.76;ReadPosRankSum=1.975;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:99,284:388:99:1104,129,0 chrIII 307852 . A G 9104.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.611;DP=495;Dels=0.00;FS=220.864;HaplotypeScore=219.5803;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=4;MQRankSum=6.192;QD=18.39;ReadPosRankSum=0.764;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:29,466:495:99:9104,1073,0 chrIII 307856 . C T 1607.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.150;DP=492;Dels=0.00;FS=24.403;HaplotypeScore=263.1421;MLEAC=1;MLEAF=0.500;MQ=41.90;MQ0=4;MQRankSum=0.588;QD=3.27;ReadPosRankSum=0.137;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:349,141:492:99:1637,0,5460 chrIII 307947 . T C 3701.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.279;DP=675;Dels=0.00;FS=11.515;HaplotypeScore=33.7611;MLEAC=1;MLEAF=0.500;MQ=27.28;MQ0=119;MQRankSum=2.003;QD=5.48;ReadPosRankSum=0.150;SB=-7.080e+02 GT:AD:DP:GQ:PL 0/1:245,425:675:99:3701,0,2186 chrIII 307953 . T C 3950.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DP=694;Dels=0.00;FS=8.720;HaplotypeScore=22.1458;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=122;MQRankSum=0.580;QD=5.69;ReadPosRankSum=1.093;SB=-9.750e+02 GT:AD:DP:GQ:PL 0/1:259,434:694:99:3950,0,2430 chrIII 308124 . C T 4691.01 filter AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=21.7340;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=5;QD=14.04;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,331:334:99:4691,578,0 chrIII 308358 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.428;QD=19.37;ReadPosRankSum=1.713;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3447,405,0 chrIII 308368 . C T 1456.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;DP=183;Dels=0.00;FS=1.986;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=52.45;MQ0=0;MQRankSum=-2.662;QD=7.96;ReadPosRankSum=-1.805;SB=-3.440e+02 GT:AD:DP:GQ:PL 0/1:63,120:183:99:1486,0,980 chrIII 308371 . T G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=0.289;QD=17.74;ReadPosRankSum=1.655;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3227,378,0 chrIII 308403 . T A 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.1581;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.972;QD=16.58;ReadPosRankSum=2.871;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3116,354,0 chrIII 308509 . T C 9378.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.414;DP=441;Dels=0.00;FS=9.949;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=2.737;QD=21.27;ReadPosRankSum=4.462;SB=-3.538e+03 GT:AD:DP:GQ:PL 1/1:7,434:441:99:9378,1129,0 chrIII 308537 . C A 9495.01 filter AC=2;AF=1.00;AN=2;DP=473;Dels=0.00;FS=0.000;HaplotypeScore=21.4291;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.07;SB=-4.091e+03 GT:AD:DP:GQ:PL 1/1:0,472:473:99:9495,1153,0 chrIII 308828 . A G 7141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=329;Dels=0.00;FS=2.788;HaplotypeScore=12.4390;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-0.934;QD=21.71;ReadPosRankSum=2.389;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:2,325:329:99:7141,833,0 chrIII 308849 . T C 6697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=318;Dels=0.00;FS=14.991;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.782;QD=21.06;ReadPosRankSum=2.965;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:3,314:318:99:6697,777,0 chrIII 308868 . T C 5437.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.21;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:5437,665,0 chrIII 308960 . A C 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.497;QD=20.55;ReadPosRankSum=2.405;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4520,522,0 chrIII 308997 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=228;Dels=0.00;FS=5.188;HaplotypeScore=8.8006;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;MQRankSum=-1.151;QD=16.43;ReadPosRankSum=3.422;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:4,224:228:99:3746,441,0 chrIII 309021 . T C 2657 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=140.8006;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=13.28;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:2690,315,0 chrIII 309022 . T C 2521 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=140.8006;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=12.60;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:2554,300,0 chrIII 309814 . G A 11655.01 filter AC=2;AF=1.00;AN=2;DP=586;Dels=0.00;FS=0.000;HaplotypeScore=37.2394;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.89;SB=-4.798e+03 GT:AD:DP:GQ:PL 1/1:0,585:586:99:11655,1393,0 chrIII 309858 . C A 9572.01 filter AC=2;AF=1.00;AN=2;DP=488;Dels=0.00;FS=0.000;HaplotypeScore=28.0266;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.61;SB=-5.154e+03 GT:AD:DP:GQ:PL 1/1:0,487:488:99:9572,1150,0 chrIII 310191 . T A 7222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=334;Dels=0.00;FS=8.794;HaplotypeScore=16.3524;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.280;QD=21.62;ReadPosRankSum=3.394;SB=-3.547e+03 GT:AD:DP:GQ:PL 1/1:4,329:333:99:7222,825,0 chrIII 310251 . A T 7914.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.036;DP=367;Dels=0.01;FS=21.394;HaplotypeScore=55.3783;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.954;QD=21.56;ReadPosRankSum=4.184;SB=-4.050e+03 GT:AD:DP:GQ:PL 1/1:6,359:365:99:7914,909,0 chrIII 310319 . G C 6654.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=19.69;SB=-3.312e+03 GT:AD:DP:GQ:PL 1/1:0,335:338:99:6654,776,0 chrIII 310333 . T C 6721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.247;QD=20.00;ReadPosRankSum=1.681;SB=-3.514e+03 GT:AD:DP:GQ:PL 1/1:1,335:336:99:6721,785,0 chrIII 310403 . C T 8849.01 filter AC=2;AF=1.00;AN=2;DP=427;Dels=0.00;FS=0.000;HaplotypeScore=15.1587;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.72;SB=-4.059e+03 GT:AD:DP:GQ:PL 1/1:0,426:426:99:8849,1049,0 chrIII 310488 . T A 9409.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=415;Dels=0.00;FS=5.918;HaplotypeScore=27.8828;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.895;QD=22.67;ReadPosRankSum=2.925;SB=-4.678e+03 GT:AD:DP:GQ:PL 1/1:3,412:415:99:9409,1083,0 chrIII 310525 . T G 8445.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.099;DP=396;Dels=0.00;FS=0.000;HaplotypeScore=16.0634;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.256;QD=21.33;ReadPosRankSum=2.739;SB=-4.323e+03 GT:AD:DP:GQ:PL 1/1:3,392:396:99:8445,992,0 chrIII 310835 . A T 8259.01 filter AC=2;AF=1.00;AN=2;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-3.365e+03 GT:AD:DP:GQ:PL 1/1:0,369:370:99:8259,954,0 chrIII 310884 . T C 8050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.691;DP=358;Dels=0.00;FS=16.318;HaplotypeScore=28.3556;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=4.020;QD=22.49;ReadPosRankSum=4.719;SB=-3.617e+03 GT:AD:DP:GQ:PL 1/1:8,346:358:99:8050,950,0 chrIII 311237 . G A 6045.01 filter AC=2;AF=1.00;AN=2;DP=428;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=89;QD=14.12;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,424:428:99:6045,690,0 chrIII 311497 . G A 8158.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=428;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=11;QD=19.06;SB=-4.350e+03 GT:AD:DP:GQ:PL 1/1:0,428:428:99:8158,930,0 chrIII 311501 . T A 8233.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=433;Dels=0.00;FS=4.010;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=5;MQRankSum=-1.287;QD=19.01;ReadPosRankSum=1.708;SB=-4.382e+03 GT:AD:DP:GQ:PL 1/1:1,432:433:99:8233,939,0 chrIII 311506 . A G 8370.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=437;Dels=0.00;FS=0.000;HaplotypeScore=5.0657;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=3;QD=19.15;SB=-4.449e+03 GT:AD:DP:GQ:PL 1/1:3,432:437:99:8370,957,0 chrIII 311513 . T C 8562.01 filter AC=2;AF=1.00;AN=2;DP=444;Dels=0.00;FS=0.000;HaplotypeScore=6.7863;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=19.28;SB=-4.022e+03 GT:AD:DP:GQ:PL 1/1:0,444:444:99:8562,975,0 chrIII 311763 . T G 7526.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.20;SB=-4.032e+03 GT:AD:DP:GQ:PL 1/1:0,335:339:99:7526,875,0 chrIII 311848 . A G 7816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=358;Dels=0.00;FS=3.047;HaplotypeScore=27.1969;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.221;QD=21.83;ReadPosRankSum=1.722;SB=-4.096e+03 GT:AD:DP:GQ:PL 1/1:1,352:358:99:7816,940,0 chrIII 311959 . C T 7380.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.22;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:0,362:365:99:7380,884,0 chrIII 311980 . T C 7544.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=362;Dels=0.00;FS=2.818;HaplotypeScore=10.2524;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.574;QD=20.84;ReadPosRankSum=2.422;SB=-3.629e+03 GT:AD:DP:GQ:PL 1/1:2,359:362:99:7544,887,0 chrIII 312103 . G T 6666.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.83;SB=-3.320e+03 GT:AD:DP:GQ:PL 1/1:0,318:320:99:6666,797,0 chrIII 312176 . C A 8053.01 filter AC=2;AF=1.00;AN=2;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=24.5842;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.94;SB=-3.863e+03 GT:AD:DP:GQ:PL 1/1:0,363:367:99:8053,927,0 chrIII 312321 . A T 6811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=301;Dels=0.00;FS=3.083;HaplotypeScore=21.2895;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.628;QD=22.63;ReadPosRankSum=1.698;SB=-3.763e+03 GT:AD:DP:GQ:PL 1/1:1,300:301:99:6811,771,0 chrIII 312423 . G A 6362.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=14.2313;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.64;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:6362,720,0 chrIII 312504 . C T 7825.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=20.5932;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.38;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:0,365:366:99:7825,932,0 chrIII 312554 . C G 6654.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.33;SB=-3.365e+03 GT:AD:DP:GQ:PL 1/1:0,310:312:99:6654,774,0 chrIII 312727 . G T 7616.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=24.0479;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.29;SB=-3.881e+03 GT:AD:DP:GQ:PL 1/1:0,325:327:99:7616,861,0 chrIII 312790 . C T 6132.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=20.1197;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.58;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:6132,728,0 chrIII 312895 . T C 9937.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=421;Dels=0.00;FS=8.222;HaplotypeScore=22.5271;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.486;QD=23.60;ReadPosRankSum=3.417;SB=-4.410e+03 GT:AD:DP:GQ:PL 1/1:4,416:421:99:9937,1143,0 chrIII 313024 . T C 11918.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.247;DP=519;Dels=0.00;FS=8.204;HaplotypeScore=37.0063;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.197;QD=22.96;ReadPosRankSum=3.395;SB=-5.111e+03 GT:AD:DP:GQ:PL 1/1:4,513:519:99:11918,1403,0 chrIII 313165 . C T 11655.01 filter AC=2;AF=1.00;AN=2;DP=534;Dels=0.00;FS=0.000;HaplotypeScore=32.0465;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.83;SB=-4.326e+03 GT:AD:DP:GQ:PL 1/1:0,532:534:99:11655,1352,0 chrIII 313321 . T C 7346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=351;Dels=0.00;FS=7.915;HaplotypeScore=21.6007;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.887;QD=20.93;ReadPosRankSum=2.428;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:2,348:351:99:7346,849,0 chrIII 313385 . T C 8409.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=396;Dels=0.00;FS=6.001;HaplotypeScore=30.2930;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.397;QD=21.23;ReadPosRankSum=2.951;SB=-4.501e+03 GT:AD:DP:GQ:PL 1/1:3,389:396:99:8409,986,0 chrIII 313471 . G A 4993.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=10.8254;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=14.47;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,344:345:99:4993,605,0 chrIII 313543 . T C 9490.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.166;DP=503;Dels=0.00;FS=9.855;HaplotypeScore=25.4065;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.619;QD=18.87;ReadPosRankSum=4.200;SB=-3.994e+03 GT:AD:DP:GQ:PL 1/1:7,494:503:99:9490,1095,0 chrIII 313677 . C T 8434.01 filter AC=2;AF=1.00;AN=2;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=21.79;SB=-3.911e+03 GT:AD:DP:GQ:PL 1/1:0,386:387:99:8434,978,0 chrIII 313679 . T A 8402.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=384;Dels=0.00;FS=12.111;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=-0.308;QD=21.88;ReadPosRankSum=2.829;SB=-3.710e+03 GT:AD:DP:GQ:PL 1/1:3,381:384:99:8402,960,0 chrIII 313732 . A G 10346.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.604;DP=516;Dels=0.00;FS=0.000;HaplotypeScore=34.7225;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=1.301;QD=20.05;ReadPosRankSum=3.546;SB=-3.392e+03 GT:AD:DP:GQ:PL 1/1:5,509:516:99:10346,1205,0 chrIII 313806 . A G 11097.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=513;Dels=0.00;FS=5.625;HaplotypeScore=32.9605;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.947;QD=21.63;ReadPosRankSum=2.955;SB=-5.299e+03 GT:AD:DP:GQ:PL 1/1:3,509:513:99:11097,1298,0 chrIII 313861 . C A 5436.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=14.6077;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=15.85;SB=-3.522e+03 GT:AD:DP:GQ:PL 1/1:0,343:343:99:5436,659,0 chrIII 313876 . C T 5098.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=4.7143;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=14.73;SB=-3.605e+03 GT:AD:DP:GQ:PL 1/1:0,341:346:99:5098,594,0 chrIII 313899 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.434;DP=321;Dels=0.00;FS=5.219;HaplotypeScore=11.1080;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;MQRankSum=-2.996;QD=11.97;ReadPosRankSum=3.423;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:4,314:321:99:3841,453,0 chrIII 313904 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=5.5614;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;MQRankSum=0.844;QD=11.47;ReadPosRankSum=-0.711;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,312:313:99:3591,428,0 chrIII 313914 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=345;Dels=0.00;FS=2.641;HaplotypeScore=14.7076;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;MQRankSum=-1.936;QD=11.13;ReadPosRankSum=2.421;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:2,343:345:99:3839,455,0 chrIII 313989 . G A 6454.01 filter AC=2;AF=1.00;AN=2;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=16.98;SB=-4.779e+03 GT:AD:DP:GQ:PL 1/1:0,380:380:99:6454,735,0 chrIII 313995 . T A 6374.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=386;Dels=0.00;FS=3.022;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;MQRankSum=-1.509;QD=16.51;ReadPosRankSum=2.405;SB=-4.759e+03 GT:AD:DP:GQ:PL 1/1:2,384:386:99:6374,726,0 chrIII 314002 . G A 6364.01 filter AC=2;AF=1.00;AN=2;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=16.66;SB=-4.769e+03 GT:AD:DP:GQ:PL 1/1:0,379:382:99:6364,720,0 chrIII 314007 . C T 5984.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=2.8055;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=15.91;SB=-4.623e+03 GT:AD:DP:GQ:PL 1/1:0,375:376:99:5984,684,0 chrIII 314039 . T A 4851.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=390;Dels=0.00;FS=8.924;HaplotypeScore=5.9519;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;MQRankSum=-2.535;QD=12.44;ReadPosRankSum=3.431;SB=-4.365e+03 GT:AD:DP:GQ:PL 1/1:4,386:390:99:4851,561,0 chrIII 314042 . A C 4569.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=390;Dels=0.00;FS=20.064;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;MQRankSum=-2.896;QD=11.72;ReadPosRankSum=3.032;SB=-3.936e+03 GT:AD:DP:GQ:PL 1/1:6,382:390:99:4569,542,0 chrIII 314072 . G A 7683.01 filter AC=2;AF=1.00;AN=2;DP=460;Dels=0.00;FS=0.000;HaplotypeScore=3.3544;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=16.70;SB=-4.801e+03 GT:AD:DP:GQ:PL 1/1:0,460:460:99:7683,887,0 chrIII 314097 . G A 9470.01 filter AC=2;AF=1.00;AN=2;DP=496;Dels=0.00;FS=0.000;HaplotypeScore=17.7870;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=19.09;SB=-5.542e+03 GT:AD:DP:GQ:PL 1/1:0,488:496:99:9470,1097,0 chrIII 314219 . A G 9711.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=452;Dels=0.00;FS=3.565;HaplotypeScore=17.8971;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;MQRankSum=-0.662;QD=21.48;ReadPosRankSum=1.640;SB=-4.743e+03 GT:AD:DP:GQ:PL 1/1:1,449:452:99:9711,1183,0 chrIII 314246 . T C 10750.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.813;DP=518;Dels=0.00;FS=12.023;HaplotypeScore=22.4083;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=1;MQRankSum=2.716;QD=20.75;ReadPosRankSum=3.834;SB=-5.518e+03 GT:AD:DP:GQ:PL 1/1:5,511:518:99:10750,1274,0 chrIII 314364 . T G 10351.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.652;DP=486;Dels=0.00;FS=11.483;HaplotypeScore=44.4076;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=2;MQRankSum=0.687;QD=21.30;ReadPosRankSum=3.847;SB=-4.818e+03 GT:AD:DP:GQ:PL 1/1:5,475:486:99:10351,1211,0 chrIII 314439 . G A 9007.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.087;DP=506;Dels=0.00;FS=13.608;HaplotypeScore=29.9810;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;MQRankSum=2.968;QD=17.80;ReadPosRankSum=-1.869;SB=-4.297e+03 GT:AD:DP:GQ:PL 1/1:4,502:506:99:9007,1029,0 chrIII 314450 . G C 7036.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.614;DP=460;Dels=0.00;FS=14.169;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;MQRankSum=2.219;QD=15.30;ReadPosRankSum=-3.086;SB=-3.354e+03 GT:AD:DP:GQ:PL 1/1:4,453:460:99:7036,853,0 chrIII 314456 . C T 6989.01 filter AC=2;AF=1.00;AN=2;DP=440;Dels=0.00;FS=0.000;HaplotypeScore=2.8048;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=15.88;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,440:440:99:6989,792,0 chrIII 314472 . T C 5145.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=3.4858;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=13.23;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,389:389:99:5145,597,0 chrIII 314486 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.799;DP=314;Dels=0.00;FS=9.549;HaplotypeScore=7.2945;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;MQRankSum=-1.955;QD=11.11;ReadPosRankSum=4.665;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:8,306:314:99:3490,399,0 chrIII 314495 . C A 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.669;DP=314;Dels=0.00;FS=22.363;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=2;MQRankSum=1.898;QD=11.22;ReadPosRankSum=1.480;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:4,303:314:99:3523,408,0 chrIII 314498 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=4.7849;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=2;QD=12.09;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,313:313:99:3783,426,0 chrIII 314573 . C G 8191.01 filter AC=2;AF=1.00;AN=2;DP=409;Dels=0.00;FS=0.000;HaplotypeScore=11.4886;MLEAC=2;MLEAF=1.00;MQ=35.44;MQ0=40;QD=20.03;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:4,401:409:99:8191,962,0 chrIII 314630 . G A 4104.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.514;DP=350;Dels=0.00;FS=2.311;HaplotypeScore=32.3080;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=24;MQRankSum=2.237;QD=11.73;ReadPosRankSum=-0.089;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:6,343:350:99:4104,483,0 chrIII 314673 . G A 1921 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=219;Dels=0.00;FS=10.584;HaplotypeScore=8.7942;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=20;MQRankSum=1.429;QD=8.77;ReadPosRankSum=-0.738;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:8,210:219:99:1954,231,0 chrIII 314724 . A G 1425 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.717;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=40;MQRankSum=1.053;QD=11.87;ReadPosRankSum=3.717;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:5,115:120:99:1458,174,0 chrIII 314730 . G A 1430 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=35;QD=12.65;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:3,110:113:99:1463,171,0 chrIII 314732 . G A 1440 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=33;QD=12.97;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:1473,171,0 chrIII 314796 . T G 357 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=41;QD=4.70;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,71:76:48:390,48,0 chrIII 314873 . A G 1588 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=175;Dels=0.00;FS=3.785;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=22;MQRankSum=0.419;QD=9.07;ReadPosRankSum=1.709;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,174:175:99:1621,198,0 chrIII 314885 . A T 1789 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=218;Dels=0.00;FS=4.862;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=25;MQRankSum=-0.440;QD=8.21;ReadPosRankSum=1.642;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,217:218:99:1822,210,0 chrIII 314898 . A G 1838 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=202;Dels=0.00;FS=5.568;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=28;MQRankSum=-1.512;QD=9.10;ReadPosRankSum=1.672;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,200:202:99:1871,225,0 chrIII 314927 . T C 614 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=27;QD=5.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,107:109:78:647,78,0 chrIII 314929 . A C 533 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=102;Dels=0.00;FS=18.865;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=25;MQRankSum=-0.022;QD=5.23;ReadPosRankSum=1.687;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,101:102:69:566,69,0 chrIII 315186 . A C 113.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.003;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.65;MQ0=41;MQRankSum=-0.589;QD=2.18;ReadPosRankSum=2.003;SB=-5.088e+01 GT:AD:DP:GQ:PL 1/1:4,48:52:18:146,18,0 chrIII 315264 . T C 101.26 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.09;MQ0=98;QD=0.96;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,104:105:15:134,15,0 chrIII 315319 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.32;MQ0=54;QD=0.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:6:48,6,0 chrIII 315337 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.74;MQ0=32;QD=0.52;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,35:36:6:50,6,0 chrIII 315375 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.14;MQ0=5;QD=1.80;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:51,6,0 chrIII 315633 . A G 359.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=194.1243;MLEAC=1;MLEAF=0.500;MQ=26.61;MQ0=1;MQRankSum=4.411;QD=3.99;ReadPosRankSum=0.506;SB=-6.863e-03 GT:AD:DP:GQ:PL 0/1:70,20:90:38:389,0,38 chrIII 315706 . G A 343 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.7762;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=16.33;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:42:376,42,0 chrIII 315716 . G T 169.03 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.7896;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=10.56;SB=-3.003e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:24:202,24,0 chrIII 315718 . C T 98.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;DP=14;Dels=0.00;FS=2.963;HaplotypeScore=2.7896;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=0;MQRankSum=0.636;QD=7.06;ReadPosRankSum=0.354;SB=-7.895e-01 GT:AD:DP:GQ:PL 0/1:4,10:14:4:128,0,4 chrIII 315783 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=6.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:52,6,0 chrIII 315787 . A T 99.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=1;QD=14.18;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:132,15,0 chrIII 315803 . G T 449 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=31.3348;MLEAC=2;MLEAF=1.00;MQ=20.99;MQ0=6;QD=7.02;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:60:482,60,0 chrIII 315807 . G T 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.058;DP=100;Dels=0.00;FS=8.503;HaplotypeScore=51.7431;MLEAC=1;MLEAF=0.500;MQ=25.80;MQ0=9;MQRankSum=0.971;QD=0.52;ReadPosRankSum=-0.424;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,23:100:82:82,0,303 chrIII 315810 . G A 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DP=127;Dels=0.00;FS=51.371;HaplotypeScore=76.6541;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=12;MQRankSum=-1.258;QD=0.67;ReadPosRankSum=4.430;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,13:127:99:115,0,488 chrIII 315841 . A G 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.350;DP=334;Dels=0.00;FS=24.028;HaplotypeScore=66.5120;MLEAC=1;MLEAF=0.500;MQ=26.36;MQ0=20;MQRankSum=-2.006;QD=0.36;ReadPosRankSum=-0.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:270,63:334:99:151,0,2431 chrIII 315891 . T A 960.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453;DP=368;Dels=0.00;FS=8.280;HaplotypeScore=12.3662;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=17;MQRankSum=-4.795;QD=2.61;ReadPosRankSum=-0.242;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:203,165:368:99:990,0,1925 chrIII 315898 . C T 3969.01 filter AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=13.2096;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=17;QD=11.47;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,344:346:99:3969,470,0 chrIII 315903 . A C 1408.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.661;DP=298;Dels=0.00;FS=28.410;HaplotypeScore=23.4305;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=12;MQRankSum=4.655;QD=4.72;ReadPosRankSum=5.295;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:142,155:298:99:1438,0,1030 chrIII 315909 . A T 1371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;DP=259;Dels=0.00;FS=23.820;HaplotypeScore=22.4571;MLEAC=1;MLEAF=0.500;MQ=25.65;MQ0=11;MQRankSum=3.334;QD=5.29;ReadPosRankSum=7.037;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:101,140:259:99:1401,0,678 chrIII 315932 . A C 1114 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=95;Dels=0.00;FS=18.719;HaplotypeScore=10.2844;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=4;MQRankSum=-0.338;QD=11.73;ReadPosRankSum=2.287;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1147,144,0 chrIII 315941 . G A 153.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DP=45;Dels=0.00;FS=6.691;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=3;MQRankSum=1.162;QD=3.40;ReadPosRankSum=2.097;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:20,25:45:99:183,0,106 chrIII 315951 . C G 148.06 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=6;QD=4.78;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,25:31:21:181,21,0 chrIII 315990 . G T 1257 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.929;DP=154;Dels=0.00;FS=33.212;HaplotypeScore=32.1754;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=37;MQRankSum=1.044;QD=8.16;ReadPosRankSum=-4.613;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:16,117:154:42:1290,42,0 chrIII 316001 . G A 352.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.648;DP=291;Dels=0.00;FS=5.121;HaplotypeScore=36.5088;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=44;MQRankSum=6.630;QD=1.21;ReadPosRankSum=-6.261;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:202,85:291:99:382,0,1966 chrIII 316038 . G A 3321.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650;DP=569;Dels=0.00;FS=16.488;HaplotypeScore=290.6561;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=42;MQRankSum=5.570;QD=5.84;ReadPosRankSum=-2.999;SB=-1.771e+03 GT:AD:DP:GQ:PL 0/1:298,267:569:99:3321,0,2278 chrIII 316047 . A G 5690.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.201;DP=614;Dels=0.00;FS=0.701;HaplotypeScore=265.3706;MLEAC=1;MLEAF=0.500;MQ=25.04;MQ0=38;MQRankSum=6.063;QD=9.27;ReadPosRankSum=-0.183;SB=-2.953e+03 GT:AD:DP:GQ:PL 0/1:163,449:614:99:5690,0,588 chrIII 316056 . G A 2201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.688;DP=626;Dels=0.00;FS=20.628;HaplotypeScore=234.2532;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=26;MQRankSum=-6.765;QD=3.52;ReadPosRankSum=-5.653;SB=-9.540e+02 GT:AD:DP:GQ:PL 0/1:336,290:626:99:2231,0,4530 chrIII 316095 . T G 4175.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=26.1830;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=2;QD=11.57;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,354:361:99:4175,526,0 chrIII 316100 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=14.5462;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=2;QD=13.32;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:3889,479,0 chrIII 316158 . C A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=2.9677;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=0;QD=2.81;SB=-2.780e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIII 316167 . T C 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.8431;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=3;MQRankSum=0.604;QD=1.00;ReadPosRankSum=1.652;SB=-6.598e+01 GT:AD:DP:GQ:PL 1/1:2,44:46:9:78,9,0 chrIII 316174 . A G 217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.405;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8670;MLEAC=2;MLEAF=1.00;MQ=23.80;MQ0=3;MQRankSum=0.686;QD=3.88;ReadPosRankSum=0.948;SB=-6.502e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:30:250,30,0 chrIII 316180 . G C 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.381;DP=90;Dels=0.00;FS=2.614;HaplotypeScore=54.1361;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=6;MQRankSum=3.477;QD=1.11;ReadPosRankSum=1.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,32:90:99:130,0,318 chrIII 316203 . G A 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.447;DP=197;Dels=0.02;FS=0.000;HaplotypeScore=40.6278;MLEAC=1;MLEAF=0.500;MQ=22.65;MQ0=10;MQRankSum=3.486;QD=0.64;ReadPosRankSum=2.540;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,70:194:99:157,0,959 chrIII 316219 . A G 1584.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.030;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=102.6089;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=14;MQRankSum=-2.999;QD=5.11;ReadPosRankSum=2.652;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:106,204:310:99:1614,0,383 chrIII 316221 . G A 1625.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.168;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=102.6089;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=14;MQRankSum=-2.050;QD=5.21;ReadPosRankSum=2.578;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:108,204:312:99:1655,0,339 chrIII 316248 . A G 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.112;DP=123;Dels=0.00;FS=22.289;HaplotypeScore=27.3397;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=15;MQRankSum=3.006;QD=1.44;ReadPosRankSum=-1.085;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:71,52:123:99:207,0,515 chrIII 316278 . C T 289.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352;DP=79;Dels=0.00;FS=42.764;HaplotypeScore=25.3840;MLEAC=1;MLEAF=0.500;MQ=19.42;MQ0=7;MQRankSum=-1.959;QD=3.66;ReadPosRankSum=1.182;SB=-1.826e+02 GT:AD:DP:GQ:PL 0/1:48,31:79:99:319,0,466 chrIII 316283 . A G 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;DP=73;Dels=0.00;FS=61.826;HaplotypeScore=34.0715;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=6;MQRankSum=-2.134;QD=2.96;ReadPosRankSum=4.901;SB=-8.704e+01 GT:AD:DP:GQ:PL 0/1:52,21:73:99:246,0,427 chrIII 316290 . C T 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;DP=60;Dels=0.00;FS=21.320;HaplotypeScore=23.4669;MLEAC=1;MLEAF=0.500;MQ=17.71;MQ0=6;MQRankSum=2.003;QD=3.38;ReadPosRankSum=-3.415;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,20:60:99:233,0,385 chrIII 316304 . G A 257.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.413;DP=34;Dels=0.00;FS=8.786;HaplotypeScore=10.0542;MLEAC=1;MLEAF=0.500;MQ=18.27;MQ0=1;MQRankSum=-0.424;QD=7.56;ReadPosRankSum=3.887;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:14,20:34:41:287,0,41 chrIII 316313 . T C 294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.239;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.8768;MLEAC=2;MLEAF=1.00;MQ=16.93;MQ0=0;MQRankSum=0.248;QD=14.00;ReadPosRankSum=0.908;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:29:327,29,0 chrIII 316326 . G A 227 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=16.21;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:36:260,36,0 chrIII 316472 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.84;MQ0=0;QD=1.00;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:43,6,0 chrIII 316476 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.84;MQ0=0;QD=1.00;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:43,6,0 chrIII 316477 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203;DP=13;Dels=0.00;FS=11.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.07;MQ0=0;MQRankSum=-1.737;QD=0.93;ReadPosRankSum=1.470;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:1,12:13:6:43,6,0 chrIII 316482 . C G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;DP=12;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.16;MQ0=0;MQRankSum=-1.738;QD=1.00;ReadPosRankSum=-1.738;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,11:12:6:43,6,0 chrIV 1400 . T A 245 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=0;QD=6.28;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:278,36,0 chrIV 1401 . G A 245 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=0;QD=6.28;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:278,36,0 chrIV 1404 . T C 245 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=0;QD=6.28;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:278,36,0 chrIV 1408 . C A 245 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=0;QD=6.28;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:278,36,0 chrIV 1410 . G A 245 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=0;QD=6.28;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:278,36,0 chrIV 1411 . T C 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=0;QD=6.13;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,38:39:36:272,36,0 chrIV 1416 . T C 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=0;QD=6.13;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:272,36,0 chrIV 1417 . C A 242 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=0;QD=6.21;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:275,36,0 chrIV 1511 . C A 44.97 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=0;QD=0.62;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,73:73:9:77,9,0 chrIV 1516 . C T 10.46 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.723;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=21.0758;MLEAC=1;MLEAF=0.500;MQ=24.12;MQ0=0;MQRankSum=1.696;QD=0.15;ReadPosRankSum=-0.006;SB=-4.963e-02 GT:AD:DP:GQ:PL 0/1:29,40:69:17:40,0,17 chrIV 1525 . G C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=0;QD=0.71;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,37:58:9:73,9,0 chrIV 1531 . T C 31.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=0;MQRankSum=-0.024;QD=0.54;ReadPosRankSum=-2.348;SB=-6.072e-02 GT:AD:DP:GQ:PL 0/1:22,36:58:16:61,0,16 chrIV 1535 . C A 55.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7303;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=0;MQRankSum=1.168;QD=0.99;ReadPosRankSum=-1.997;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:21,35:56:10:85,0,10 chrIV 1555 . T G 120.13 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.9310;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=0;QD=2.67;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:18:153,18,0 chrIV 1567 . T C 58.04 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.576;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=27.8061;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=0;MQRankSum=-2.898;QD=1.42;ReadPosRankSum=2.516;SB=-4.080e-02 GT:AD:DP:GQ:PL 0/1:11,30:41:18:88,0,18 chrIV 1581 . A G 317 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=30.4073;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=0;QD=5.66;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:45:350,45,0 chrIV 1617 . G A 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=7.031;DP=171;Dels=0.00;FS=61.904;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=3;MQRankSum=5.222;QD=13.17;ReadPosRankSum=6.494;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:23,147:171:99:2285,280,0 chrIV 1624 . T A 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.514;DP=182;Dels=0.00;FS=47.998;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.54;MQ0=3;MQRankSum=7.818;QD=12.23;ReadPosRankSum=8.221;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:39,143:182:99:2259,275,0 chrIV 1633 . T G 2208 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.615;DP=190;Dels=0.00;FS=84.120;HaplotypeScore=82.0378;MLEAC=2;MLEAF=1.00;MQ=17.62;MQ0=5;MQRankSum=9.821;QD=11.62;ReadPosRankSum=10.090;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:57,133:190:99:2241,274,0 chrIV 1635 . G T 1496.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.541;DP=189;Dels=0.00;FS=55.452;HaplotypeScore=49.9052;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=5;MQRankSum=6.045;QD=7.92;ReadPosRankSum=5.789;SB=-2.950e+02 GT:AD:DP:GQ:PL 0/1:88,101:189:99:1526,0,162 chrIV 1747 . C T 204.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.376;DP=77;Dels=0.00;FS=2.322;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=0;MQRankSum=3.051;QD=2.65;ReadPosRankSum=0.945;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:59,18:77:99:234,0,605 chrIV 1748 . A G 192.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.821;DP=77;Dels=0.00;FS=2.322;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=0;MQRankSum=2.678;QD=2.49;ReadPosRankSum=1.029;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:59,18:77:99:222,0,642 chrIV 1767 . A G 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;DP=75;Dels=0.00;FS=16.525;HaplotypeScore=33.1175;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=0;MQRankSum=1.769;QD=1.55;ReadPosRankSum=0.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,9:75:99:146,0,295 chrIV 1817 . G C 212 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=68.7999;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;MQRankSum=2.106;QD=6.42;ReadPosRankSum=-0.454;SB=3.00 GT:AD:DP:GQ:PL 1/1:5,16:33:30:245,30,0 chrIV 1823 . G A 218 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.200;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=45.5629;MLEAC=2;MLEAF=1.00;MQ=16.54;MQ0=0;MQRankSum=4.489;QD=5.19;ReadPosRankSum=3.071;SB=3.00 GT:AD:DP:GQ:PL 1/1:27,15:42:30:251,30,0 chrIV 1834 . C T 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.386;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=40.5820;MLEAC=1;MLEAF=0.500;MQ=15.72;MQ0=0;MQRankSum=4.790;QD=2.53;ReadPosRankSum=1.868;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,13:49:99:154,0,110 chrIV 1835 . G A 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.929;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=40.5820;MLEAC=1;MLEAF=0.500;MQ=15.72;MQ0=0;MQRankSum=2.157;QD=0.67;ReadPosRankSum=1.043;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,7:49:63:63,0,198 chrIV 1841 . G A 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.411;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=59.3725;MLEAC=1;MLEAF=0.500;MQ=15.53;MQ0=0;MQRankSum=-0.976;QD=0.65;ReadPosRankSum=-0.325;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,18:51:63:63,0,198 chrIV 1843 . G A 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=59.3637;MLEAC=1;MLEAF=0.500;MQ=15.53;MQ0=0;MQRankSum=4.852;QD=2.49;ReadPosRankSum=0.140;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,13:51:99:157,0,111 chrIV 1875 . T C 160.03 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.60;MQ0=0;QD=3.33;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:24:193,24,0 chrIV 1885 . T C 93.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.806;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=0;MQRankSum=1.516;QD=2.12;ReadPosRankSum=-1.896;SB=2.74 GT:AD:DP:GQ:PL 1/1:19,25:44:15:126,15,0 chrIV 1892 . C G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=16.95;MQ0=0;QD=1.22;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:81,9,0 chrIV 1898 . A C 51.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.30;MQ0=0;MQRankSum=1.019;QD=1.53;ReadPosRankSum=1.631;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:1,33:34:9:84,9,0 chrIV 1902 . G A 54.97 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=0;QD=2.04;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:9:87,9,0 chrIV 1904 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=0;QD=1.78;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:9:80,9,0 chrIV 1905 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=0;QD=1.78;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:9:80,9,0 chrIV 1906 . C A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=0;QD=1.81;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:9:81,9,0 chrIV 1909 . T G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.73;MQ0=0;QD=1.30;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:9:79,9,0 chrIV 1924 . T C 85.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;DP=37;Dels=0.00;FS=3.103;HaplotypeScore=5.9495;MLEAC=1;MLEAF=0.500;MQ=21.89;MQ0=0;MQRankSum=1.051;QD=2.30;ReadPosRankSum=1.173;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:17,20:37:79:115,0,79 chrIV 1930 . T G 136.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.7382;MLEAC=1;MLEAF=0.500;MQ=23.49;MQ0=2;MQRankSum=0.981;QD=3.32;ReadPosRankSum=0.659;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:12,29:41:99:166,0,101 chrIV 1932 . A C 164.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;DP=45;Dels=0.00;FS=2.444;HaplotypeScore=8.3156;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=3;MQRankSum=0.065;QD=3.64;ReadPosRankSum=0.227;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:9,33:45:97:194,0,97 chrIV 1936 . G C 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DP=50;Dels=0.00;FS=7.762;HaplotypeScore=6.1295;MLEAC=1;MLEAF=0.500;MQ=22.50;MQ0=6;MQRankSum=0.495;QD=1.18;ReadPosRankSum=-0.436;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,9:50:89:89,0,210 chrIV 1939 . C T 459 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=21.60;MQ0=9;QD=8.83;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:54:492,54,0 chrIV 1945 . G C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;DP=51;Dels=0.00;FS=7.768;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=10;MQRankSum=1.088;QD=0.61;ReadPosRankSum=-0.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,6:51:61:61,0,300 chrIV 1946 . T C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;DP=51;Dels=0.00;FS=7.768;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=10;MQRankSum=0.756;QD=0.45;ReadPosRankSum=-0.830;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,6:51:53:53,0,318 chrIV 1963 . A G 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.129;DP=52;Dels=0.00;FS=42.658;HaplotypeScore=6.9324;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=11;MQRankSum=2.633;QD=1.69;ReadPosRankSum=1.056;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,16:52:99:118,0,276 chrIV 1964 . T C 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;DP=53;Dels=0.00;FS=29.511;HaplotypeScore=6.9324;MLEAC=1;MLEAF=0.500;MQ=21.79;MQ0=11;MQRankSum=1.935;QD=0.29;ReadPosRankSum=0.654;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,12:53:45:45,0,366 chrIV 2008 . T G 444 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9698;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=11;QD=8.71;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:54:477,54,0 chrIV 2009 . A G 250.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;DP=51;Dels=0.00;FS=42.619;HaplotypeScore=2.9698;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=11;MQRankSum=-2.216;QD=4.90;ReadPosRankSum=2.367;SB=-5.602e+01 GT:AD:DP:GQ:PL 0/1:6,45:51:62:280,0,62 chrIV 2035 . G T 475 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=2;QD=9.50;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:57:508,57,0 chrIV 2045 . C T 435 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=4;QD=8.70;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:51:468,51,0 chrIV 2046 . T G 418 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=4;QD=8.36;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:4,46:50:51:451,51,0 chrIV 2060 . G C 394 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=5;QD=6.35;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:48:427,48,0 chrIV 2062 . C T 449 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=5;QD=7.24;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:5,57:62:54:482,54,0 chrIV 2066 . G T 463 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=5;QD=6.81;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:5,63:68:54:496,54,0 chrIV 2072 . T C 449 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=5;MQRankSum=-0.958;QD=5.83;ReadPosRankSum=2.903;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:8,69:77:54:482,54,0 chrIV 2076 . G A 519 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=5;QD=6.92;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:5,70:75:60:552,60,0 chrIV 2087 . A G 547 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=5;QD=7.01;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:5,73:78:66:580,66,0 chrIV 2112 . T C 360 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=5;MQRankSum=-2.419;QD=4.19;ReadPosRankSum=2.389;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,84:86:45:393,45,0 chrIV 2135 . G A 578 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=14;QD=5.50;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:72:611,72,0 chrIV 2151 . C T 576 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=11;QD=6.13;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:69:609,69,0 chrIV 2152 . T G 557 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=11;QD=5.93;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:69:590,69,0 chrIV 2156 . C A 593 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=11;QD=5.93;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:72:626,72,0 chrIV 2228 . A T 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;MQRankSum=1.477;QD=21.37;ReadPosRankSum=1.696;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2063,234,0 chrIV 2230 . T C 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=102;Dels=0.00;FS=3.054;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;MQRankSum=-1.098;QD=20.56;ReadPosRankSum=2.257;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2130,246,0 chrIV 2306 . A G 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0609;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;MQRankSum=0.813;QD=20.74;ReadPosRankSum=1.709;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3103,354,0 chrIV 2406 . T A 3157 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=5;QD=23.74;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3190,345,0 chrIV 2469 . G A 1545 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=27;QD=14.71;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1578,174,0 chrIV 2470 . G A 1602 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=29;QD=14.70;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1635,177,0 chrIV 2573 . G C 2790 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=3;QD=18.98;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2823,318,0 chrIV 2621 . C T 1900 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=15;QD=16.96;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1933,213,0 chrIV 2685 . T C 39.97 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.84;MQ0=48;QD=0.64;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:9:72,9,0 chrIV 2778 . A G 1241 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=24.99;MQ0=38;QD=10.43;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:25,94:119:99:1274,150,0 chrIV 2854 . A G 341 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=64;QD=3.87;SB=-9.700e+01 GT:AD:DP:GQ:PL 1/1:53,35:88:45:374,45,0 chrIV 3282 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.51;MQ0=63;QD=0.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:6:48,6,0 chrIV 3499 . G A 294 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=15.44;MQ0=29;QD=6.26;SB=-1.599e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:36:327,36,0 chrIV 3582 . T C 2519 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=24.53;MQ0=6;QD=22.69;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2552,288,0 chrIV 3625 . A T 1183 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=82;Dels=0.00;FS=6.232;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=20.93;MQ0=19;MQRankSum=-1.292;QD=14.43;ReadPosRankSum=1.677;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1216,135,0 chrIV 3720 . C A 951 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.83;MQ0=27;QD=9.61;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:984,111,0 chrIV 3986 . T C 127.13 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.38;MQ0=41;QD=2.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:18:160,18,0 chrIV 4024 . T C 285 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.58;MQ0=24;QD=5.70;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,49:50:36:318,36,0 chrIV 4085 . A G 701 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=18.17;MQ0=21;QD=10.62;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:84:734,84,0 chrIV 4142 . T A 74.51 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=8.96;MQ0=41;QD=1.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:12:107,12,0 chrIV 4267 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.11;MQ0=31;QD=0.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:6:53,6,0 chrIV 4649 . T C 42.97 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.42;MQ0=53;QD=0.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:9:75,9,0 chrIV 4813 . G A 635 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=16.29;MQ0=31;QD=10.76;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:78:668,78,0 chrIV 4961 . C T 235 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.59;MQ0=26;QD=4.90;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:30:268,30,0 chrIV 5036 . G A 117.13 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=10.29;MQ0=41;QD=1.95;SB=-5.288e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:18:150,18,0 chrIV 5223 . G A 159.06 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.96;MQ0=45;QD=2.79;SB=-5.304e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:21:192,21,0 chrIV 5408 . A T 183.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=36;Dels=0.00;FS=8.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.39;MQ0=13;MQRankSum=-1.734;QD=5.08;ReadPosRankSum=1.583;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:1,35:36:24:216,24,0 chrIV 5428 . A G 124.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.22;MQ0=6;QD=4.00;SB=-2.688e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:18:157,18,0 chrIV 5434 . C A 198.01 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.18;MQ0=1;QD=6.60;SB=-7.889e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:27:231,27,0 chrIV 5438 . C T 234 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=2;QD=6.69;SB=-2.700e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:30:267,30,0 chrIV 5440 . T G 230 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=3;QD=6.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:30:263,30,0 chrIV 5492 . G A 1241 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=7;QD=12.79;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1274,141,0 chrIV 5558 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=1;QD=21.05;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2454,273,0 chrIV 5591 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=2;QD=20.92;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1560,177,0 chrIV 5644 . T A 199.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.31;MQ0=2;MQRankSum=0.751;QD=18.09;ReadPosRankSum=0.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,10:11:24:232,24,0 chrIV 5778 . A G 506 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=18.01;MQ0=38;MQRankSum=0.343;QD=5.88;ReadPosRankSum=2.240;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:2,83:85:63:539,63,0 chrIV 5828 . G A 243 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=17.80;MQ0=28;QD=4.96;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,48:49:30:276,30,0 chrIV 10746 . G T 47.97 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.16;MQ0=49;QD=0.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:9:80,9,0 chrIV 10958 . G A 558 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=15.33;MQ0=35;QD=8.72;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:66:591,66,0 chrIV 11083 . C A 775 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.80;MQ0=20;QD=12.50;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:90:808,90,0 chrIV 11109 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.04;MQ0=24;QD=0.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:28:6:51,6,0 chrIV 11195 . G A 447 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.75;MQ0=18;QD=7.45;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:54:480,54,0 chrIV 11216 . T G 454 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.61;MQ0=20;QD=7.09;SB=-6.534e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:57:487,57,0 chrIV 12341 . G A 127.13 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=13.07;MQ0=23;QD=2.08;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:3,58:61:18:160,18,0 chrIV 12416 . T A 71.51 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.41;MQ0=50;QD=1.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:12:104,12,0 chrIV 12545 . G A 2004 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=21.85;MQ0=14;QD=16.43;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2037,231,0 chrIV 12812 . C T 119.13 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=10.13;MQ0=82;QD=1.22;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,98:98:18:152,18,0 chrIV 13850 . A G 153.06 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.29;MQ0=60;QD=2.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:21:186,21,0 chrIV 13965 . G A 243 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.26;MQ0=49;QD=4.05;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:30:276,30,0 chrIV 13990 . T C 230 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.35;MQ0=48;QD=3.97;SB=-5.098e+01 GT:AD:DP:GQ:PL 1/1:1,55:58:30:263,30,0 chrIV 14043 . A C 413 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.57;MQ0=35;QD=7.65;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:51:446,51,0 chrIV 14160 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.47;MQ0=49;QD=0.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:6:57,6,0 chrIV 14258 . T C 121.13 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.39;MQ0=58;QD=1.84;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:1,65:66:18:154,18,0 chrIV 14285 . C G 95.26 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.18;MQ0=57;QD=1.49;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,63:64:15:128,15,0 chrIV 14293 . C T 100.26 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.10;MQ0=58;QD=1.54;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,65:65:15:133,15,0 chrIV 14326 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.03;MQ0=43;QD=0.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:9:77,9,0 chrIV 14768 . T C 70.51 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.34;MQ0=33;QD=1.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:12:103,12,0 chrIV 14828 . G T 270 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=13.37;MQ0=30;QD=5.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:33:303,33,0 chrIV 14864 . C T 182.03 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.26;MQ0=28;QD=3.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:24:215,24,0 chrIV 14897 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.95;MQ0=26;QD=1.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,34:35:9:77,9,0 chrIV 14915 . A T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.54;MQ0=16;QD=0.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:6:48,6,0 chrIV 14959 . T G 98.26 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.06;MQ0=7;QD=7.02;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,13:14:15:131,15,0 chrIV 14965 . T G 96.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=15;Dels=0.00;FS=6.021;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.47;MQ0=7;MQRankSum=-0.747;QD=6.42;ReadPosRankSum=0.747;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:1,12:15:15:129,15,0 chrIV 15005 . A G 682 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=4;QD=18.94;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:715,84,0 chrIV 15044 . C A 1017 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=11;QD=18.16;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1050,117,0 chrIV 15187 . C T 74.51 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.57;MQ0=12;QD=3.39;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:107,12,0 chrIV 15223 . A G 232 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.95;MQ0=14;QD=6.44;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:265,30,0 chrIV 15245 . A G 236 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=23;QD=5.36;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,43:44:30:269,30,0 chrIV 16260 . T C 1105 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.944;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=15.2986;MLEAC=2;MLEAF=1.00;MQ=10.28;MQ0=277;MQRankSum=-1.277;QD=2.88;ReadPosRankSum=2.404;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,380:384:99:1138,129,0 chrIV 16306 . C T 1897 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.32;MQ0=236;QD=4.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,386:386:99:1930,225,0 chrIV 16362 . A G 795 filter AC=2;AF=1.00;AN=2;DP=431;Dels=0.00;FS=0.000;HaplotypeScore=4.6540;MLEAC=2;MLEAF=1.00;MQ=7.53;MQ0=355;QD=1.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,430:431:99:828,102,0 chrIV 16440 . T A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=6.3300;MLEAC=1;MLEAF=0.500;MQ=8.42;MQ0=301;MQRankSum=-0.186;QD=0.09;ReadPosRankSum=-0.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:283,91:374:64:64,0,593 chrIV 16551 . A G 280.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;DP=257;Dels=0.00;FS=35.691;HaplotypeScore=11.6086;MLEAC=1;MLEAF=0.500;MQ=12.10;MQ0=197;MQRankSum=0.639;QD=1.09;ReadPosRankSum=2.585;SB=-1.246e+02 GT:AD:DP:GQ:PL 0/1:137,120:257:99:310,0,296 chrIV 16554 . T C 757 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.398;DP=261;Dels=0.00;FS=44.021;HaplotypeScore=13.8653;MLEAC=2;MLEAF=1.00;MQ=12.51;MQ0=202;MQRankSum=-2.546;QD=2.90;ReadPosRankSum=5.398;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:13,244:261:99:790,99,0 chrIV 16713 . A G 78.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.98;MQ0=0;QD=8.72;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:111,12,0 chrIV 16722 . T C 72.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=1;QD=7.25;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:105,12,0 chrIV 16731 . T C 74.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=2;QD=5.32;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:12:107,12,0 chrIV 16794 . T C 231 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.149;DP=64;Dels=0.00;FS=13.637;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=15.37;MQ0=22;MQRankSum=-1.050;QD=3.61;ReadPosRankSum=3.235;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:4,60:64:30:264,30,0 chrIV 16803 . C T 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.445;DP=75;Dels=0.00;FS=10.387;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=13.61;MQ0=36;MQRankSum=-2.316;QD=2.08;ReadPosRankSum=-0.759;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:15,60:75:80:186,0,80 chrIV 17377 . C T 188.03 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.40;MQ0=7;QD=12.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:24:221,24,0 chrIV 17407 . T C 59.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.46;MQ0=7;QD=6.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:9:92,9,0 chrIV 17519 . T G 116.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.18;MQ0=2;MQRankSum=-1.509;QD=3.52;ReadPosRankSum=1.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,32:33:18:149,18,0 chrIV 17525 . G A 190.03 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=4;QD=4.87;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:0,37:39:24:223,24,0 chrIV 17538 . A G 387 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=7;QD=8.06;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:48:420,48,0 chrIV 17568 . G A 841 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=14;QD=12.19;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:96:874,96,0 chrIV 17615 . G A 1185 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=13;QD=17.43;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1218,132,0 chrIV 17660 . T C 1289 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=2;MQRankSum=0.729;QD=18.96;ReadPosRankSum=2.375;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1322,153,0 chrIV 17772 . A T 2346 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=9;QD=18.47;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2379,258,0 chrIV 17886 . A G 1114 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;MQRankSum=-3.346;QD=16.88;ReadPosRankSum=3.319;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:4,62:66:99:1147,132,0 chrIV 17888 . C T 1262 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=20.35;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1295,135,0 chrIV 17889 . C T 1248 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=20.46;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1281,135,0 chrIV 17893 . T G 1155 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=18.93;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1188,135,0 chrIV 17894 . T C 1150 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=18.85;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1183,135,0 chrIV 17898 . C T 1207 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=19.79;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1240,135,0 chrIV 17906 . T C 763 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=16.59;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:93:796,93,0 chrIV 17907 . A G 792 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=17.22;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:93:825,93,0 chrIV 17909 . A G 733 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=15.93;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:90:766,90,0 chrIV 17910 . A G 725 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=15.76;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:90:758,90,0 chrIV 17911 . G C 739 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=16.07;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:90:772,90,0 chrIV 17912 . T C 822 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=17.87;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:855,99,0 chrIV 17917 . G A 867 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;QD=11.88;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:900,99,0 chrIV 17918 . A C 840 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;QD=11.51;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:873,99,0 chrIV 17921 . C A 867 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=10.32;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:900,99,0 chrIV 17955 . C T 490 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=0;QD=5.83;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:57:523,57,0 chrIV 17973 . C T 78.51 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.01;MQ0=0;QD=1.33;SB=-1.525e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:12:111,12,0 chrIV 17994 . A G 78.51 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.62;MQ0=0;QD=2.12;SB=-4.352e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:12:111,12,0 chrIV 18009 . T G 50.97 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.06;MQ0=0;QD=1.82;SB=-4.395e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:83,9,0 chrIV 18012 . A G 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.63;MQ0=0;MQRankSum=0.413;QD=2.04;ReadPosRankSum=1.569;SB=-4.385e+01 GT:AD:DP:GQ:PL 1/1:1,20:22:9:77,9,0 chrIV 18092 . T C 212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.377;DP=30;Dels=0.00;FS=5.930;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=16.05;MQ0=0;MQRankSum=4.311;QD=7.07;ReadPosRankSum=-0.879;SB=-1.359e+02 GT:AD:DP:GQ:PL 1/1:17,13:30:33:245,33,0 chrIV 18093 . A G 212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.557;DP=31;Dels=0.00;FS=1.494;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=0;MQRankSum=4.635;QD=6.84;ReadPosRankSum=-2.349;SB=-1.379e+02 GT:AD:DP:GQ:PL 1/1:14,16:31:33:245,33,0 chrIV 18120 . G A 615 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.52;MQ0=0;QD=15.00;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:648,87,0 chrIV 18140 . A G 645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.153;DP=39;Dels=0.00;FS=5.515;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.72;MQ0=0;MQRankSum=2.662;QD=16.54;ReadPosRankSum=2.847;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:4,35:39:90:678,90,0 chrIV 18141 . A C 640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.014;DP=39;Dels=0.00;FS=5.515;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.72;MQ0=0;MQRankSum=2.662;QD=16.41;ReadPosRankSum=2.893;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:4,35:39:90:673,90,0 chrIV 18180 . G C 548 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=17.26;MQ0=0;QD=15.66;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:581,78,0 chrIV 18195 . A C 184 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.95;MQ0=1;QD=10.22;SB=-6.495e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:30:217,30,0 chrIV 18200 . A G 162.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.63;MQ0=1;QD=9.00;SB=-6.489e+01 GT:AD:DP:GQ:PL 1/1:1,16:18:27:195,27,0 chrIV 18219 . A G 120.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.416;DP=35;Dels=0.00;FS=7.834;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=12.04;MQ0=1;MQRankSum=2.254;QD=3.44;ReadPosRankSum=4.682;SB=-4.135e+01 GT:AD:DP:GQ:PL 1/1:20,15:35:4:151,4,0 chrIV 18231 . T A 120.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.024;DP=40;Dels=0.00;FS=5.391;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.20;MQ0=9;MQRankSum=1.759;QD=3.01;ReadPosRankSum=-0.573;SB=-4.135e+01 GT:AD:DP:GQ:PL 1/1:25,15:40:4:151,4,0 chrIV 18264 . T A 10.50 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;DP=33;Dels=0.00;FS=5.076;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.79;MQ0=11;MQRankSum=2.977;QD=0.32;ReadPosRankSum=-2.429;SB=-1.609e+01 GT:AD:DP:GQ:PL 0/1:28,5:33:14:40,0,14 chrIV 18303 . C T 174.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.524;DP=35;Dels=0.00;FS=17.799;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=13.56;MQ0=10;MQRankSum=4.133;QD=4.97;ReadPosRankSum=3.245;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:20,15:35:27:207,27,0 chrIV 18318 . T C 171.01 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.91;MQ0=6;QD=6.84;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:6,19:25:27:204,27,0 chrIV 18325 . T C 216 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.40;MQ0=1;QD=9.82;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:249,33,0 chrIV 18333 . A G 217 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.30;MQ0=1;QD=9.43;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,22:23:33:250,33,0 chrIV 18342 . A G 214 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=1;QD=8.92;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,23:24:33:247,33,0 chrIV 18345 . G A 216 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.93;MQ0=0;QD=9.39;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:249,33,0 chrIV 18351 . A G 215 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.93;MQ0=0;QD=9.35;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:248,33,0 chrIV 18357 . A C 214 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=0;QD=10.19;SB=-1.086e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:247,33,0 chrIV 18360 . G T 125.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.93;MQ0=0;QD=8.34;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:158,21,0 chrIV 18361 . C T 125.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=1;QD=7.82;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:158,21,0 chrIV 18362 . C T 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=1;QD=7.75;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:157,21,0 chrIV 18363 . A G 123.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=1;QD=7.69;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:156,21,0 chrIV 18369 . T A 146.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.19;MQ0=1;QD=8.11;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:1,17:18:24:179,24,0 chrIV 18375 . C G 101.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=1;QD=7.22;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:134,18,0 chrIV 18376 . T C 102.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=1;QD=7.30;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:135,18,0 chrIV 18377 . T C 102.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=1;QD=7.30;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:135,18,0 chrIV 18381 . A G 101.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=1;QD=7.22;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:134,18,0 chrIV 18384 . A G 101.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=1;QD=7.22;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:134,18,0 chrIV 18388 . C G 101.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=1;QD=7.22;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:134,18,0 chrIV 18389 . C T 102.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=1;QD=7.30;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:135,18,0 chrIV 18402 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=1;QD=3.30;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:65,9,0 chrIV 18404 . C A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=1;QD=3.30;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:65,9,0 chrIV 18405 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=1;QD=3.30;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:65,9,0 chrIV 18408 . T A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=1;QD=3.30;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:65,9,0 chrIV 18411 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=1;QD=3.30;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:65,9,0 chrIV 18422 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.96;MQ0=1;MQRankSum=2.520;QD=1.00;ReadPosRankSum=2.520;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:5,7:12:6:43,6,0 chrIV 18426 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.689;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.70;MQ0=1;MQRankSum=2.793;QD=0.93;ReadPosRankSum=2.141;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:5,8:13:6:43,6,0 chrIV 18531 . A T 72.51 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=2.50;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:12:105,12,0 chrIV 18540 . A G 80.51 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=2.52;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:113,12,0 chrIV 18571 . C G 97.26 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.43;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:130,15,0 chrIV 18588 . G A 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.60;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,39:39:15:134,15,0 chrIV 18590 . T G 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.57;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,39:39:15:133,15,0 chrIV 18596 . C G 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.96;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:12:111,12,0 chrIV 18603 . C T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.75;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:81,9,0 chrIV 18605 . G A 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.68;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:79,9,0 chrIV 18606 . A G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.68;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:79,9,0 chrIV 18612 . C T 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.43;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:9:82,9,0 chrIV 18615 . T A 58.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.408;QD=1.73;ReadPosRankSum=1.631;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,33:34:9:91,9,0 chrIV 18624 . T G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.337;QD=0.62;ReadPosRankSum=1.634;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,34:35:6:53,6,0 chrIV 18651 . G A 150.06 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.17;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:21:183,21,0 chrIV 18663 . C T 184.03 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.84;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:217,24,0 chrIV 18671 . G C 178.03 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.56;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:24:211,24,0 chrIV 18675 . T C 239 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=5.31;SB=-4.602e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:30:272,30,0 chrIV 18682 . A G 296 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=6.17;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:39:329,39,0 chrIV 18683 . G C 296 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=5.92;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:39:329,39,0 chrIV 18702 . A C 752 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8606;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;QD=11.39;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:90:785,90,0 chrIV 18805 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=21.46;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1578,165,0 chrIV 18882 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=23.71;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1693,180,0 chrIV 19014 . T C 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;MQRankSum=1.602;QD=20.11;ReadPosRankSum=1.405;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1119,129,0 chrIV 19058 . C A 1229 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=21.56;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1262,141,0 chrIV 19084 . T C 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4927;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;MQRankSum=0.276;QD=22.03;ReadPosRankSum=1.682;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1553,174,0 chrIV 19119 . A G 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.873;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;MQRankSum=-0.081;QD=20.71;ReadPosRankSum=1.692;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1814,204,0 chrIV 19143 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=16.48;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1483,162,0 chrIV 19153 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=15.98;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1359,150,0 chrIV 19177 . T C 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=2.766;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;MQRankSum=-1.513;QD=12.26;ReadPosRankSum=2.396;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1161,129,0 chrIV 19180 . A G 1075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=92;Dels=0.00;FS=8.728;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;MQRankSum=-1.165;QD=11.68;ReadPosRankSum=2.396;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1108,126,0 chrIV 19248 . G A 716 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=11.02;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:81:749,81,0 chrIV 19249 . C T 727 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=11.54;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:81:760,81,0 chrIV 19251 . G A 702 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=11.32;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:81:735,81,0 chrIV 19252 . G A 703 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=11.34;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:81:736,81,0 chrIV 19277 . C A 877 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.03;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=10.20;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:910,99,0 chrIV 19281 . G A 1059 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=11.64;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1092,120,0 chrIV 19376 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=14.5413;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.61;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2362,261,0 chrIV 19413 . C G 2923 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=23.02;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2956,330,0 chrIV 19455 . T C 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=125;Dels=0.00;FS=2.748;HaplotypeScore=6.8527;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-1.545;QD=22.52;ReadPosRankSum=2.371;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2848,324,0 chrIV 19746 . A C 2344 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.70;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2377,273,0 chrIV 19880 . C T 2558 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.91;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2591,285,0 chrIV 19907 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=20.99;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2174,246,0 chrIV 19934 . C T 2243 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.99;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2276,246,0 chrIV 19984 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.34;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1928,225,0 chrIV 20081 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.84;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2173,234,0 chrIV 20103 . A G 1698 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=18.06;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1731,195,0 chrIV 20112 . T G 1818 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.18;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1851,213,0 chrIV 20160 . C G 1370 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=16.71;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1403,159,0 chrIV 20223 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.68;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1667,180,0 chrIV 20232 . C T 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.760;QD=17.48;ReadPosRankSum=-0.554;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:3,81:85:99:1519,165,0 chrIV 20376 . C T 481 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=14.15;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:54:514,54,0 chrIV 20400 . T C 485 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=16.72;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:57:518,57,0 chrIV 20444 . A C 898 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.88;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:931,102,0 chrIV 20520 . A G 348 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.734;QD=17.40;ReadPosRankSum=1.561;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:1,19:20:45:381,45,0 chrIV 20578 . C T 188.03 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=8.55;SB=-5.504e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:24:221,24,0 chrIV 20584 . A T 266 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=11.57;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:33:299,33,0 chrIV 20659 . T C 672 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=15.27;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:81:705,81,0 chrIV 20661 . G A 615 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=13.37;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:75:648,75,0 chrIV 20737 . G T 742 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=18.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:87:775,87,0 chrIV 20772 . T C 1210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=0.192;QD=19.21;ReadPosRankSum=1.677;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1243,141,0 chrIV 20779 . T G 1266 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=17.34;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1299,150,0 chrIV 20785 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=16.61;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1395,162,0 chrIV 20969 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=23.83;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2488,270,0 chrIV 20989 . T G 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=-1.636;QD=21.56;ReadPosRankSum=1.700;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2362,267,0 chrIV 21079 . A C 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.812;DP=123;Dels=0.00;FS=8.199;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;MQRankSum=-2.093;QD=0.57;ReadPosRankSum=-4.550;SB=-9.251e+01 GT:AD:DP:GQ:PL 1/1:114,9:123:12:103,12,0 chrIV 21086 . A T 1954 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=16.70;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1987,216,0 chrIV 21113 . G T 1690 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.65;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1723,195,0 chrIV 21119 . A T 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.081;QD=13.86;ReadPosRankSum=1.700;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1516,171,0 chrIV 21143 . C T 1108 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.59;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1141,129,0 chrIV 21149 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=13.52;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1250,138,0 chrIV 21165 . G A 1142 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=12.98;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1175,126,0 chrIV 21168 . G A 1119 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=13.16;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1152,126,0 chrIV 21172 . A T 1139 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=12.80;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1172,129,0 chrIV 21182 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=13.92;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1258,138,0 chrIV 21255 . G C 2271 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=21.42;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2304,267,0 chrIV 21300 . G T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=25.35;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3752,399,0 chrIV 21337 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=25.47;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3489,375,0 chrIV 21380 . T C 2710 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=23.57;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2743,306,0 chrIV 21431 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=20.11;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2728,300,0 chrIV 21450 . A T 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=2.991;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=0.817;QD=19.42;ReadPosRankSum=2.417;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2985,321,0 chrIV 21476 . C A 2762 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=18.29;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2795,315,0 chrIV 21481 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.66;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2665,300,0 chrIV 21510 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=155;Dels=0.00;FS=2.674;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.426;QD=16.96;ReadPosRankSum=2.417;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:2662,309,0 chrIV 21677 . A G 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=0.491;QD=20.88;ReadPosRankSum=1.703;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2559,303,0 chrIV 21692 . T G 2481 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=20.50;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2514,300,0 chrIV 21718 . T C 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.437;QD=21.79;ReadPosRankSum=1.672;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2539,288,0 chrIV 21759 . A G 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.753;QD=19.71;ReadPosRankSum=1.657;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1866,210,0 chrIV 21781 . A G 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=110;Dels=0.00;FS=3.777;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.214;QD=20.89;ReadPosRankSum=1.699;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,104:110:99:2331,264,0 chrIV 21807 . T C 2239 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.12;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2272,261,0 chrIV 21856 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.11;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2536,273,0 chrIV 21872 . T C 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=3.011;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=-1.050;QD=17.89;ReadPosRankSum=2.410;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2234,252,0 chrIV 21893 . T A 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.577;QD=18.60;ReadPosRankSum=1.706;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2544,279,0 chrIV 21929 . A G 2803 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.56;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2836,327,0 chrIV 22006 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.827;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.148;QD=23.04;ReadPosRankSum=1.658;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3258,375,0 chrIV 22049 . G T 2924 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1085;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.50;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2957,330,0 chrIV 22056 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.76;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2970,321,0 chrIV 22166 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.67;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4001,459,0 chrIV 22206 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0411;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.47;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3356,387,0 chrIV 22312 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.05;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3619,408,0 chrIV 22379 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.42;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3171,342,0 chrIV 22448 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.02;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2335,264,0 chrIV 22481 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.89;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2749,303,0 chrIV 22513 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6493;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.56;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2459,279,0 chrIV 22525 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.50;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2613,288,0 chrIV 22594 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.051;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.502;QD=22.94;ReadPosRankSum=1.700;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2511,276,0 chrIV 22636 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.72;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2552,279,0 chrIV 22713 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.02;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2676,291,0 chrIV 22728 . T A 2260 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.18;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2293,258,0 chrIV 22858 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.315;QD=22.43;ReadPosRankSum=1.706;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2994,342,0 chrIV 22874 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.988;QD=22.11;ReadPosRankSum=1.681;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3040,342,0 chrIV 22928 . A G 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.030;QD=19.89;ReadPosRankSum=1.671;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2301,264,0 chrIV 22996 . T C 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.8535;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.910;QD=21.63;ReadPosRankSum=1.703;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2585,297,0 chrIV 23066 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=3.015;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.348;QD=21.98;ReadPosRankSum=2.365;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3220,366,0 chrIV 23143 . A G 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.930;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.653;QD=21.55;ReadPosRankSum=1.679;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2878,324,0 chrIV 23155 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.70;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3006,336,0 chrIV 23241 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.53;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3312,360,0 chrIV 23275 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6222;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.01;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3777,399,0 chrIV 23305 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.65;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3226,345,0 chrIV 23647 . T C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.986;QD=17.88;ReadPosRankSum=1.626;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1195,135,0 chrIV 23657 . C T 1194 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.95;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1227,132,0 chrIV 23797 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1887,213,0 chrIV 24141 . T C 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.226;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.454;QD=19.05;ReadPosRankSum=1.698;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1995,228,0 chrIV 24172 . G T 2086 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2339;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.51;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2119,234,0 chrIV 24553 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4996;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.82;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3219,366,0 chrIV 24628 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.2326;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.98;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3671,429,0 chrIV 24937 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.398;QD=23.45;ReadPosRankSum=1.692;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4128,468,0 chrIV 25195 . C G 2703 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2736,309,0 chrIV 25492 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.44;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2649,297,0 chrIV 25510 . A C 2299 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.99;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2332,273,0 chrIV 25835 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2779,300,0 chrIV 26111 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.28;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1771,198,0 chrIV 26187 . T A 1510 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.23;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1543,174,0 chrIV 26309 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1277,144,0 chrIV 26523 . T C 1381 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.41;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1414,162,0 chrIV 26536 . A T 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=4.327;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.466;QD=22.91;ReadPosRankSum=1.306;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1522,168,0 chrIV 26950 . C A 2261 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.84;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2294,255,0 chrIV 27072 . T C 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.911;QD=19.77;ReadPosRankSum=1.696;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1951,222,0 chrIV 27090 . T C 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.385;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.143;QD=19.71;ReadPosRankSum=1.700;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2181,243,0 chrIV 27189 . T C 2161 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.75;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2194,249,0 chrIV 27210 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.41;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2351,258,0 chrIV 27235 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=105;Dels=0.00;FS=3.019;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.992;QD=20.97;ReadPosRankSum=2.402;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,101:105:99:2235,252,0 chrIV 27258 . G T 1802 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.17;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1835,207,0 chrIV 27277 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.75;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2028,222,0 chrIV 27377 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.87;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1908,213,0 chrIV 27441 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.41;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1781,201,0 chrIV 27587 . T G 1207 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.79;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1240,147,0 chrIV 27629 . G A 893 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.77;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:926,102,0 chrIV 27678 . G A 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.450;QD=23.90;ReadPosRankSum=-1.662;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1204,116,0 chrIV 27718 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.07;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1325,150,0 chrIV 27734 . C A 1288 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.21;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1321,144,0 chrIV 27879 . G T 2262 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.06;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2295,252,0 chrIV 27904 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.52;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1927,210,0 chrIV 27972 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.516;QD=22.62;ReadPosRankSum=1.624;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2227,258,0 chrIV 28077 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0657;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.87;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2983,336,0 chrIV 28487 . A G 2214 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.50;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2247,255,0 chrIV 28498 . C A 2323 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=22.34;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2356,255,0 chrIV 28530 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.62;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1830,210,0 chrIV 28537 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.36;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1769,201,0 chrIV 28578 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=18.73;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1794,201,0 chrIV 28639 . T C 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=97;Dels=0.00;FS=5.564;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=-0.365;QD=21.16;ReadPosRankSum=2.928;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2086,234,0 chrIV 28654 . C T 2061 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=17.77;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2094,225,0 chrIV 28656 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=17.86;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2105,240,0 chrIV 28798 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.78;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2153,240,0 chrIV 28799 . A G 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=101;Dels=0.00;FS=2.930;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=0.622;QD=20.64;ReadPosRankSum=2.401;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2118,240,0 chrIV 28853 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.58;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2688,291,0 chrIV 28968 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.06;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2728,300,0 chrIV 29103 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=8.2541;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.46;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4175,444,0 chrIV 29124 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=172;Dels=0.00;FS=2.633;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.050;QD=18.59;ReadPosRankSum=2.392;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3230,369,0 chrIV 29135 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.04;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3083,345,0 chrIV 29152 . T G 2941 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.7477;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=15.90;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2974,342,0 chrIV 29441 . G A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.9055;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.04;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3779,405,0 chrIV 29570 . C T 4243.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.43;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4243,477,0 chrIV 29654 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=18.3443;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.49;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4204,456,0 chrIV 29693 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.18;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3778,414,0 chrIV 29701 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.063;QD=20.59;ReadPosRankSum=1.711;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3438,390,0 chrIV 30086 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.3851;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.99;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3317,354,0 chrIV 30128 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.3934;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.71;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3997,444,0 chrIV 30404 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.81;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2509,267,0 chrIV 30446 . T G 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=111;Dels=0.00;FS=6.631;HaplotypeScore=6.6766;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.055;QD=21.05;ReadPosRankSum=2.405;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2370,273,0 chrIV 30464 . A G 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=115;Dels=0.00;FS=3.171;HaplotypeScore=5.3157;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.228;QD=18.98;ReadPosRankSum=1.701;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,109:115:99:2216,255,0 chrIV 30492 . C A 2201 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.34;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2234,255,0 chrIV 30545 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.722;QD=24.16;ReadPosRankSum=1.708;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3479,393,0 chrIV 30752 . T A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.2826;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.29;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3819,423,0 chrIV 30908 . A G 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.058;QD=22.41;ReadPosRankSum=1.703;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2722,312,0 chrIV 31112 . A C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.3861;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.828;QD=21.39;ReadPosRankSum=1.702;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2493,288,0 chrIV 31224 . G T 1898 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.87;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1931,210,0 chrIV 31412 . T A 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6839;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.575;QD=21.67;ReadPosRankSum=1.653;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2894,330,0 chrIV 31492 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.18;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3579,378,0 chrIV 31511 . A G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=3.305;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.024;QD=21.83;ReadPosRankSum=1.682;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3045,348,0 chrIV 31685 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.27;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2479,267,0 chrIV 31709 . T C 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=5.509;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.263;QD=22.51;ReadPosRankSum=1.696;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2216,249,0 chrIV 31776 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.74;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2716,297,0 chrIV 31987 . G T 2192 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.07;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2225,243,0 chrIV 32090 . T A 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=1.265;QD=18.24;ReadPosRankSum=0.759;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1656,189,0 chrIV 32114 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.65;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1730,192,0 chrIV 32217 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4771;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.92;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2905,318,0 chrIV 32295 . A G 2641 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.2127;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.01;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2674,300,0 chrIV 32409 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.24;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3670,417,0 chrIV 32706 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=3.036;HaplotypeScore=9.4017;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.296;QD=22.34;ReadPosRankSum=1.649;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3730,423,0 chrIV 32904 . T A 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=20.3920;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.158;QD=22.25;ReadPosRankSum=1.714;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4160,447,0 chrIV 33027 . G T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.56;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4499,495,0 chrIV 33135 . C G 2530 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.74;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2563,294,0 chrIV 33253 . A T 2093 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.506;QD=22.03;ReadPosRankSum=2.398;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2126,240,0 chrIV 33295 . G A 870 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=21.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:903,99,0 chrIV 33298 . G A 819 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=24.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:93:852,93,0 chrIV 33374 . G A 879 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:36:99:912,99,0 chrIV 33397 . T A 1163 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.650;QD=24.23;ReadPosRankSum=1.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1196,132,0 chrIV 34063 . C T 1055 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1088,120,0 chrIV 34159 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.47;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1673,183,0 chrIV 34237 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2160,231,0 chrIV 34987 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.02;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3545,384,0 chrIV 35378 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.80;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3443,375,0 chrIV 35498 . T G 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=136;Dels=0.00;FS=6.101;HaplotypeScore=11.7979;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.157;QD=20.01;ReadPosRankSum=2.844;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2755,309,0 chrIV 35807 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-0.179;QD=19.72;ReadPosRankSum=1.708;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2912,327,0 chrIV 37096 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.9573;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.65;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3507,405,0 chrIV 37123 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.62;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3189,351,0 chrIV 37597 . C A 2676 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2709,306,0 chrIV 37847 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.548;QD=22.86;ReadPosRankSum=1.712;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3886,444,0 chrIV 38924 . T C 1925 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1958,222,0 chrIV 39272 . A G 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=8.759;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.725;QD=17.77;ReadPosRankSum=2.281;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2130,246,0 chrIV 39281 . T C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=123;Dels=0.00;FS=2.753;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.333;QD=17.94;ReadPosRankSum=2.349;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2240,249,0 chrIV 39347 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.185;QD=19.18;ReadPosRankSum=1.680;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2584,300,0 chrIV 39500 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.584;QD=21.73;ReadPosRankSum=1.673;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3846,438,0 chrIV 39986 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.26;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3073,345,0 chrIV 40439 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.4403;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.61;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3617,411,0 chrIV 40666 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.20;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1941,210,0 chrIV 40838 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2200,237,0 chrIV 40965 . G C 1943 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.83;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1976,222,0 chrIV 41150 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.154;DP=100;Dels=0.00;FS=6.608;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.455;QD=21.63;ReadPosRankSum=2.351;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2196,249,0 chrIV 41303 . T G 2743 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.77;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2776,330,0 chrIV 41318 . T C 2652 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.29;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2685,309,0 chrIV 41339 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.39;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2514,282,0 chrIV 41360 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.62;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2025,222,0 chrIV 41423 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.99;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3046,348,0 chrIV 41590 . T C 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=116;Dels=0.00;FS=2.798;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.817;QD=23.10;ReadPosRankSum=2.344;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2713,309,0 chrIV 41927 . G A 3010 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.15;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3043,333,0 chrIV 42041 . T A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.4475;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.75;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3362,366,0 chrIV 42278 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.9254;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.72;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4223,468,0 chrIV 42474 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.9391;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.83;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2478,276,0 chrIV 42534 . A G 2466 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.49;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2499,282,0 chrIV 42633 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=17.69;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,142:148:99:2651,300,0 chrIV 42966 . G C 4353.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.0225;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.87;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4353,492,0 chrIV 43014 . C T 4858.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.2916;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.70;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4858,546,0 chrIV 43075 . A G 5232.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.6177;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.15;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5232,597,0 chrIV 43335 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.48;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3359,363,0 chrIV 43389 . C A 3170 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.42;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3203,357,0 chrIV 43482 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3298,363,0 chrIV 44032 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6951;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=22.71;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3099,348,0 chrIV 44271 . C T 2098 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0919;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=25;QD=13.11;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2131,237,0 chrIV 44274 . C T 1880 filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.7853;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=27;QD=12.21;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:1913,216,0 chrIV 44379 . C T 1357 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=43;QD=9.91;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1390,150,0 chrIV 44913 . T C 512.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.721;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=13.46;MQ0=108;MQRankSum=1.384;QD=2.32;ReadPosRankSum=1.516;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,107:221:99:542,0,485 chrIV 45078 . C T 831.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.654;DP=284;Dels=0.00;FS=149.216;HaplotypeScore=9.4518;MLEAC=1;MLEAF=0.500;MQ=41.44;MQ0=10;MQRankSum=-6.004;QD=2.93;ReadPosRankSum=0.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,77:284:99:861,0,4063 chrIV 45363 . T C 5174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=245;Dels=0.00;FS=3.644;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.392;QD=21.12;ReadPosRankSum=1.704;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:1,242:245:99:5174,594,0 chrIV 46068 . G C 715 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.83;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:84:748,84,0 chrIV 46115 . G A 663 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.72;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:696,81,0 chrIV 46164 . T A 1148 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.96;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1181,129,0 chrIV 46179 . T G 1258 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.46;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1291,147,0 chrIV 46292 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.62;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3121,339,0 chrIV 46322 . G A 2830 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.61;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2863,306,0 chrIV 46397 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.16;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1599,183,0 chrIV 46818 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.25;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2880,324,0 chrIV 47243 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.181;QD=23.07;ReadPosRankSum=1.714;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4498,516,0 chrIV 47365 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.0617;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.415;QD=18.97;ReadPosRankSum=2.411;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2442,285,0 chrIV 47663 . C T 2135 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2168,237,0 chrIV 48046 . A G 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=123;Dels=0.00;FS=2.493;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.123;QD=21.49;ReadPosRankSum=2.927;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2676,312,0 chrIV 48065 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7288;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.41;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2987,336,0 chrIV 48241 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.421;QD=23.98;ReadPosRankSum=1.386;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3357,375,0 chrIV 48267 . G T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.72;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3313,354,0 chrIV 48349 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.34;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3160,348,0 chrIV 49026 . A C 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.3548;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.086;QD=21.89;ReadPosRankSum=1.714;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4246,498,0 chrIV 49100 . A G 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=118;Dels=0.00;FS=5.609;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.017;QD=18.09;ReadPosRankSum=2.804;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2168,243,0 chrIV 49108 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.42;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2096,228,0 chrIV 49497 . T A 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.316;QD=21.34;ReadPosRankSum=1.702;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2487,279,0 chrIV 49518 . T G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.656;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.422;QD=21.68;ReadPosRankSum=1.704;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2721,312,0 chrIV 49565 . A G 2664 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.81;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2697,309,0 chrIV 49666 . T G 3133 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.87;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3166,360,0 chrIV 49881 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.73;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3189,360,0 chrIV 50365 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=11.9470;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.04;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1906,207,0 chrIV 50436 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.89;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2255,249,0 chrIV 50502 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=19.45;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1317,141,0 chrIV 50509 . T C 1197 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.14;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1230,141,0 chrIV 50523 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=15.71;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1180,135,0 chrIV 50545 . T G 992 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=13.78;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1025,114,0 chrIV 50586 . T C 1070 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=54.9633;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=2;QD=13.21;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1103,126,0 chrIV 50720 . T C 1791 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.83;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1824,204,0 chrIV 50767 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.46;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2093,228,0 chrIV 51199 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2873,312,0 chrIV 51817 . T A 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=182;Dels=0.00;FS=7.619;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=0.155;QD=19.81;ReadPosRankSum=2.369;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3605,393,0 chrIV 51820 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=7.609;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=0.331;QD=18.75;ReadPosRankSum=2.385;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:3581,408,0 chrIV 51859 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=206;Dels=0.00;FS=3.139;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.050;QD=18.99;ReadPosRankSum=1.698;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:3912,447,0 chrIV 51967 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.75;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2897,327,0 chrIV 51985 . T C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=143;Dels=0.00;FS=2.813;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.799;QD=21.80;ReadPosRankSum=2.398;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3151,354,0 chrIV 52093 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.9708;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.98;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2918,333,0 chrIV 52141 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.052;QD=21.66;ReadPosRankSum=-1.644;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3465,390,0 chrIV 52534 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.79;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2745,297,0 chrIV 52556 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.36;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2509,279,0 chrIV 52600 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.56;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3078,330,0 chrIV 52663 . G T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.58;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3974,447,0 chrIV 53011 . A G 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.696;QD=22.19;ReadPosRankSum=1.696;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4327,489,0 chrIV 53077 . T C 4646.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4646,546,0 chrIV 53471 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.46;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4452,489,0 chrIV 53536 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.1335;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.87;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3270,357,0 chrIV 53890 . A G 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.000;QD=23.52;ReadPosRankSum=1.696;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2291,264,0 chrIV 54185 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.53;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1593,180,0 chrIV 54191 . A G 1555 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.20;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1588,177,0 chrIV 54212 . A C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.095;QD=18.60;ReadPosRankSum=1.692;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1651,195,0 chrIV 54313 . A G 2054 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2087,246,0 chrIV 54379 . A G 2506 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.3263;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.58;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2539,288,0 chrIV 54490 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.25;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3325,357,0 chrIV 55084 . T A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.09;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4433,501,0 chrIV 55881 . A G 2655 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.24;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2688,306,0 chrIV 56929 . T C 912 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.27;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:945,108,0 chrIV 56962 . T A 212.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=16.31;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:245,27,0 chrIV 56967 . G A 186.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.91;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:24:219,24,0 chrIV 57157 . T G 696 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.09;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:84:729,84,0 chrIV 57189 . A G 941 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.39;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:974,111,0 chrIV 57234 . G C 1530 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.96;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1563,174,0 chrIV 57243 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.99;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1612,174,0 chrIV 57334 . T C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5294;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.505;QD=22.53;ReadPosRankSum=1.704;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2804,321,0 chrIV 57401 . T C 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=2.787;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.393;QD=20.40;ReadPosRankSum=2.389;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2522,288,0 chrIV 57426 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.60;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2542,276,0 chrIV 57781 . C G 2852 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.81;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2885,336,0 chrIV 57805 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.76;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3405,378,0 chrIV 57851 . T G 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=23.2680;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.688;QD=21.20;ReadPosRankSum=1.710;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3350,381,0 chrIV 58341 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.65;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3020,330,0 chrIV 58346 . T C 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.828;QD=18.02;ReadPosRankSum=1.689;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2934,330,0 chrIV 58356 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=18.26;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2973,333,0 chrIV 58765 . T A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.04;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3618,396,0 chrIV 59246 . C T 4611.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.40;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4611,507,0 chrIV 59321 . T A 6814.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=11.3637;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;QD=23.74;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6814,739,0 chrIV 59506 . A G 8128.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=377;Dels=0.00;FS=2.947;HaplotypeScore=26.0816;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.332;QD=21.56;ReadPosRankSum=2.384;SB=-4.235e+03 GT:AD:DP:GQ:PL 1/1:2,371:377:99:8128,921,0 chrIV 59797 . G A 8994.01 filter AC=2;AF=1.00;AN=2;DP=423;Dels=0.00;FS=0.000;HaplotypeScore=6.4764;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.26;SB=-5.478e+03 GT:AD:DP:GQ:PL 1/1:0,423:423:99:8994,988,0 chrIV 59800 . A G 8479.01 filter AC=2;AF=1.00;AN=2;DP=421;Dels=0.00;FS=0.000;HaplotypeScore=8.0175;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.14;SB=-5.266e+03 GT:AD:DP:GQ:PL 1/1:0,421:421:99:8479,972,0 chrIV 59833 . A G 7317.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=379;Dels=0.00;FS=8.297;HaplotypeScore=23.8806;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.021;QD=19.31;ReadPosRankSum=3.425;SB=-3.855e+03 GT:AD:DP:GQ:PL 1/1:4,375:379:99:7317,837,0 chrIV 59868 . T C 5945.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=15.4605;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.43;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:5945,684,0 chrIV 59896 . T A 6844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=318;Dels=0.00;FS=4.380;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.678;QD=21.52;ReadPosRankSum=1.699;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:1,317:318:99:6844,759,0 chrIV 59922 . C T 6593.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=8.6454;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.54;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:0,319:321:99:6593,741,0 chrIV 60002 . G T 6633.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=19.4698;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.04;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:6633,721,0 chrIV 60081 . C T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.62;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3827,426,0 chrIV 60109 . G T 4285.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.0106;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.09;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4285,465,0 chrIV 60151 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.53;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3789,426,0 chrIV 60540 . G C 434 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.67;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:467,54,0 chrIV 60639 . A T 852 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.29;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:885,99,0 chrIV 60721 . A T 1122 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1155,126,0 chrIV 61039 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0871;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.248;QD=22.22;ReadPosRankSum=1.676;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4133,477,0 chrIV 61103 . A T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.2665;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.52;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4450,507,0 chrIV 61127 . A G 4704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=241;Dels=0.00;FS=3.011;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.036;QD=19.52;ReadPosRankSum=2.419;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:2,237:241:99:4704,543,0 chrIV 61154 . G A 5149.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.4765;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.45;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5149,555,0 chrIV 61175 . G A 5005.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.4751;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.78;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5005,561,0 chrIV 61275 . C T 5048.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=20.4195;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.57;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5048,561,0 chrIV 62205 . C T 5686.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=27.0241;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.04;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5686,636,0 chrIV 62366 . T C 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=189;Dels=0.00;FS=6.574;HaplotypeScore=16.0029;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.845;QD=19.76;ReadPosRankSum=2.384;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:3735,417,0 chrIV 62726 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.73;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3847,447,0 chrIV 62804 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=199;Dels=0.00;FS=2.927;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.129;QD=18.03;ReadPosRankSum=2.425;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3588,411,0 chrIV 62829 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=190;Dels=0.00;FS=3.150;HaplotypeScore=8.2667;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.237;QD=19.05;ReadPosRankSum=1.659;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3619,408,0 chrIV 62973 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.3823;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.16;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4053,438,0 chrIV 63046 . C G 3783.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.50;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3783,429,0 chrIV 63216 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.754;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.681;QD=22.58;ReadPosRankSum=1.693;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4041,447,0 chrIV 63228 . G C 3615.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.52;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3615,411,0 chrIV 63395 . A G 5120.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.17;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5120,570,0 chrIV 63504 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.04;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3991,429,0 chrIV 63536 . G C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.9520;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.67;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3442,390,0 chrIV 63545 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2387;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.739;QD=19.50;ReadPosRankSum=-0.172;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3393,362,0 chrIV 63612 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.63;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3385,366,0 chrIV 63653 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6454;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.94;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:2912,330,0 chrIV 63666 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.30;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2922,318,0 chrIV 63704 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=19.48;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2780,297,0 chrIV 63839 . G C 2351 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.29;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2384,273,0 chrIV 63846 . C A 2422 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.07;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2455,267,0 chrIV 64139 . T A 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=144;Dels=0.00;FS=16.601;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=1.385;QD=19.83;ReadPosRankSum=2.742;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:2889,315,0 chrIV 64151 . T C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=132;Dels=0.00;FS=15.689;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.285;QD=20.17;ReadPosRankSum=2.777;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2696,306,0 chrIV 64216 . T C 3152 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.74;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3185,360,0 chrIV 64539 . T G 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=2.926;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.395;QD=21.63;ReadPosRankSum=2.340;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2931,336,0 chrIV 64917 . G T 1879 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.64;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1912,213,0 chrIV 64950 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.334;DP=88;Dels=0.00;FS=3.375;HaplotypeScore=18.1021;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.299;QD=20.97;ReadPosRankSum=1.692;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1878,195,0 chrIV 65233 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.25;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2792,309,0 chrIV 65250 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.966;QD=20.63;ReadPosRankSum=2.333;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2632,303,0 chrIV 65350 . T C 2842 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.53;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2875,327,0 chrIV 65456 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.38;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2540,279,0 chrIV 65570 . C A 2072 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.82;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2105,231,0 chrIV 66230 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=188;Dels=0.00;FS=5.077;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.079;QD=24.58;ReadPosRankSum=3.385;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:99:4621,522,0 chrIV 66345 . G C 4662.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4662,525,0 chrIV 66401 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.6013;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.451;QD=21.37;ReadPosRankSum=1.676;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3997,459,0 chrIV 66478 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=186;Dels=0.00;FS=7.313;HaplotypeScore=13.4906;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.909;QD=20.19;ReadPosRankSum=2.330;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3756,432,0 chrIV 66552 . G T 5706.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.3553;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.87;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5706,636,0 chrIV 66855 . T G 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=4.197;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.870;QD=21.77;ReadPosRankSum=1.715;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4462,516,0 chrIV 67141 . G A 8774.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.169;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=27.2555;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.042;QD=23.03;ReadPosRankSum=-1.353;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:1,376:381:99:8774,980,0 chrIV 67426 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.4608;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.315;QD=19.14;ReadPosRankSum=2.971;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:3,239:242:99:4631,522,0 chrIV 67529 . A C 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.147;QD=18.99;ReadPosRankSum=1.687;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1495,165,0 chrIV 67659 . T C 532 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.13;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:66:565,66,0 chrIV 67718 . A G 955 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.70;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:988,108,0 chrIV 67719 . C T 980 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.27;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1013,108,0 chrIV 67805 . A C 573 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.92;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:69:606,69,0 chrIV 67845 . G C 763 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.17;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:796,93,0 chrIV 68082 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.29;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2176,231,0 chrIV 68175 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.8344;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.63;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2680,288,0 chrIV 68235 . A G 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=130;Dels=0.00;FS=3.040;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.750;QD=22.36;ReadPosRankSum=2.393;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2940,333,0 chrIV 68451 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=1.117;QD=22.70;ReadPosRankSum=1.641;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3451,399,0 chrIV 68777 . T G 2025 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.77;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2058,231,0 chrIV 68799 . G T 2506 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1674;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.58;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2539,276,0 chrIV 69384 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.4605;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4146,450,0 chrIV 69703 . A T 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.619;DP=150;Dels=0.00;FS=14.221;HaplotypeScore=12.2014;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.566;QD=22.92;ReadPosRankSum=3.377;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:4,146:150:99:3438,354,0 chrIV 69990 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=3.267;HaplotypeScore=11.6782;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.020;QD=21.67;ReadPosRankSum=1.712;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3792,435,0 chrIV 70167 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.47;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3640,396,0 chrIV 70556 . A G 1657 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1690,192,0 chrIV 70614 . T A 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.915;QD=23.60;ReadPosRankSum=1.654;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2133,228,0 chrIV 70900 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.67;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3528,384,0 chrIV 71165 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3107;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.01;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3112,342,0 chrIV 71168 . T G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=167;Dels=0.00;FS=7.184;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.817;QD=17.71;ReadPosRankSum=2.300;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,162:167:99:2990,342,0 chrIV 71207 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=18.11;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3603,414,0 chrIV 71264 . A G 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=185;Dels=0.00;FS=2.573;HaplotypeScore=15.1838;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.614;QD=21.72;ReadPosRankSum=2.940;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4018,447,0 chrIV 71523 . T G 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.906;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.499;QD=20.31;ReadPosRankSum=1.615;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2429,279,0 chrIV 71525 . A G 2494 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.61;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2527,288,0 chrIV 71645 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2676,300,0 chrIV 71743 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.6202;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.60;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2700,294,0 chrIV 72032 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.95;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2931,315,0 chrIV 72173 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.86;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2639,297,0 chrIV 72266 . T C 2549 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.96;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2582,288,0 chrIV 72290 . T C 2279 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=22.13;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2312,264,0 chrIV 72338 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.51;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1711,192,0 chrIV 72347 . C T 1404 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=18.00;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1437,156,0 chrIV 72446 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.50;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1833,210,0 chrIV 72485 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.46;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1793,198,0 chrIV 72501 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.21;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1963,213,0 chrIV 72596 . T C 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.712;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.194;QD=22.39;ReadPosRankSum=2.372;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2160,243,0 chrIV 72953 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.9741;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.70;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3180,342,0 chrIV 72956 . T C 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=5.158;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.332;QD=20.43;ReadPosRankSum=1.708;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2914,333,0 chrIV 74013 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.40;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2676,306,0 chrIV 74035 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.58;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2698,303,0 chrIV 74090 . G C 2776 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0110;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.94;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2809,318,0 chrIV 74428 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.85;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4107,453,0 chrIV 74440 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.97;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3695,420,0 chrIV 74731 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.2945;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.50;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3675,399,0 chrIV 75055 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.33;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2786,300,0 chrIV 75082 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.42;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2791,309,0 chrIV 75181 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.08;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2664,285,0 chrIV 75199 . A G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=127;Dels=0.00;FS=2.558;HaplotypeScore=3.6951;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.352;QD=18.57;ReadPosRankSum=2.896;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:3,123:127:99:2391,276,0 chrIV 75223 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.89;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2480,270,0 chrIV 76111 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.75;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3752,408,0 chrIV 76252 . T A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.19;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3794,426,0 chrIV 76418 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.83;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3799,408,0 chrIV 76551 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.54;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3359,372,0 chrIV 76572 . A G 3079 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.64;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3112,354,0 chrIV 76665 . C G 2671 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2704,315,0 chrIV 76896 . A G 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.510;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.301;QD=22.44;ReadPosRankSum=1.619;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2120,243,0 chrIV 76968 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.2795;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.823;QD=18.60;ReadPosRankSum=1.708;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2674,306,0 chrIV 76974 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.01;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2619,294,0 chrIV 77295 . A G 2793 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2826,321,0 chrIV 77397 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.19;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2950,318,0 chrIV 77418 . T C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.135;QD=19.62;ReadPosRankSum=1.710;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3074,351,0 chrIV 77571 . C A 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.745;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.1982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.570;QD=20.16;ReadPosRankSum=0.732;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3690,373,0 chrIV 77883 . T A 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.039;QD=21.33;ReadPosRankSum=1.703;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2593,285,0 chrIV 78223 . A G 1541 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.51;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1574,183,0 chrIV 78578 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.95;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4210,474,0 chrIV 78587 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.13;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4308,465,0 chrIV 78590 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.52;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4080,459,0 chrIV 78644 . T A 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=209;Dels=0.00;FS=3.009;HaplotypeScore=12.7202;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.723;QD=17.56;ReadPosRankSum=0.452;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:3671,387,0 chrIV 78945 . C G 2333 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.43;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2366,270,0 chrIV 79107 . G A 816 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.98;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:849,93,0 chrIV 79129 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.66;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:81:742,81,0 chrIV 79321 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.3887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.61;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2087,240,0 chrIV 79387 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.64;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3257,351,0 chrIV 79389 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.77;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3211,354,0 chrIV 79621 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.18;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4130,450,0 chrIV 79687 . T A 2596 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.77;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2629,297,0 chrIV 79744 . G T 3089 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.55;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3122,354,0 chrIV 79782 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.5396;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.231;QD=22.34;ReadPosRankSum=1.667;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3574,405,0 chrIV 79855 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6637;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.71;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3818,435,0 chrIV 79893 . T A 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.598;QD=22.04;ReadPosRankSum=1.692;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3768,408,0 chrIV 79909 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.37;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3028,336,0 chrIV 79932 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.13;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3281,360,0 chrIV 80013 . T C 5147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=230;Dels=0.00;FS=5.811;HaplotypeScore=17.4408;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.618;QD=22.38;ReadPosRankSum=2.899;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:3,226:230:99:5147,582,0 chrIV 80089 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.26;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4189,474,0 chrIV 80250 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=20.67;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4258,480,0 chrIV 80251 . C A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;QD=20.80;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4264,471,0 chrIV 80312 . G T 2514 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=17.70;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2547,273,0 chrIV 80328 . T C 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=8.036;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;MQRankSum=-0.902;QD=16.47;ReadPosRankSum=2.346;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2421,279,0 chrIV 80353 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;MQRankSum=-1.347;QD=16.84;ReadPosRankSum=2.418;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2660,306,0 chrIV 80374 . T C 2491 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=14.92;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2524,294,0 chrIV 80379 . T C 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=5.504;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;MQRankSum=-0.597;QD=13.95;ReadPosRankSum=1.712;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2461,279,0 chrIV 80414 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=14.65;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2377,255,0 chrIV 80430 . G T 1983 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=13.58;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2016,231,0 chrIV 80440 . T A 1708 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.77;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1741,189,0 chrIV 80445 . A T 1704 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.801;QD=14.32;ReadPosRankSum=1.703;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1737,186,0 chrIV 80448 . C T 1698 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.64;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1731,183,0 chrIV 80454 . G C 1667 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=0;QD=14.37;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1700,192,0 chrIV 80467 . G A 1668 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=15.44;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1701,186,0 chrIV 80483 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=16.31;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1501,171,0 chrIV 80506 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=17.95;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1505,171,0 chrIV 80612 . A G 2366 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=22.11;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2399,273,0 chrIV 80742 . C A 2953 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=24.40;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2986,333,0 chrIV 80759 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=24.06;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3065,330,0 chrIV 80820 . C A 2394 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.19;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2427,270,0 chrIV 80845 . C T 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.166;QD=20.78;ReadPosRankSum=-1.366;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2194,246,0 chrIV 80964 . T A 2568 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=109.4937;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=21.76;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2601,279,0 chrIV 81041 . G A 2811 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.04;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2844,324,0 chrIV 81122 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.26;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2522,279,0 chrIV 81145 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.28;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2041,231,0 chrIV 81156 . A G 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-0.959;QD=18.83;ReadPosRankSum=1.698;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1972,219,0 chrIV 81181 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=0.161;QD=17.17;ReadPosRankSum=1.696;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,96:99:99:1733,198,0 chrIV 81257 . T G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.209;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.163;QD=21.08;ReadPosRankSum=1.706;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2858,324,0 chrIV 81264 . A G 2899 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.86;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2932,336,0 chrIV 81298 . C G 2419 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.50;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2452,279,0 chrIV 81443 . G A 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.313;DP=125;Dels=0.00;FS=3.081;HaplotypeScore=8.2020;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.950;QD=22.05;ReadPosRankSum=0.587;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2789,281,0 chrIV 81492 . C A 2836 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.01;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2869,321,0 chrIV 81537 . T G 2779 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.38;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2812,315,0 chrIV 81549 . T A 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=138;Dels=0.00;FS=3.019;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.668;QD=19.32;ReadPosRankSum=2.396;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2699,303,0 chrIV 81585 . T C 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=140;Dels=0.00;FS=2.854;HaplotypeScore=10.5780;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.999;QD=20.03;ReadPosRankSum=2.397;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2837,312,0 chrIV 81776 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=162;Dels=0.00;FS=6.158;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.177;QD=22.40;ReadPosRankSum=2.388;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3628,408,0 chrIV 81868 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=171;Dels=0.00;FS=8.666;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.137;QD=22.75;ReadPosRankSum=2.406;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3890,438,0 chrIV 81963 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3324,366,0 chrIV 82022 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.94;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3991,432,0 chrIV 82743 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.44;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2649,300,0 chrIV 82754 . A T 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=4.604;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.177;QD=22.42;ReadPosRankSum=1.650;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2880,318,0 chrIV 82798 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=167;Dels=0.00;FS=5.026;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=1.366;QD=19.65;ReadPosRankSum=3.355;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3282,378,0 chrIV 82818 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.68;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3308,372,0 chrIV 82949 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.043;QD=20.03;ReadPosRankSum=1.591;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3926,444,0 chrIV 82954 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.54;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4108,441,0 chrIV 83019 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=193;Dels=0.00;FS=3.411;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.391;QD=19.09;ReadPosRankSum=1.696;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:3685,420,0 chrIV 83205 . A T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.98;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4604,501,0 chrIV 83327 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=22.47;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3527,405,0 chrIV 83349 . A G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.226;QD=22.27;ReadPosRankSum=1.682;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3106,366,0 chrIV 83387 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=22.62;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2861,333,0 chrIV 83389 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=21.44;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2885,327,0 chrIV 83514 . T A 1353 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=17.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1386,156,0 chrIV 83626 . T A 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=1.562;QD=19.97;ReadPosRankSum=1.619;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1251,135,0 chrIV 83684 . A T 1941 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=22.84;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1974,216,0 chrIV 83687 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=21.30;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1886,216,0 chrIV 84443 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.66;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3668,396,0 chrIV 84518 . G T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4678;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.28;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3795,411,0 chrIV 84625 . T C 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=143;Dels=0.00;FS=3.024;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.163;QD=18.63;ReadPosRankSum=2.295;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2697,306,0 chrIV 84632 . G T 2562 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.57;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2595,288,0 chrIV 84947 . G T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.01;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3727,405,0 chrIV 85442 . T C 3109 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4296;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.38;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3142,354,0 chrIV 85611 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.40;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3370,363,0 chrIV 85895 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1548,171,0 chrIV 86111 . C A 848 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.56;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:99:881,99,0 chrIV 86153 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.66;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1066,117,0 chrIV 86164 . T C 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.075;QD=18.93;ReadPosRankSum=1.657;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:904,102,0 chrIV 86165 . T G 856 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.61;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:889,102,0 chrIV 86337 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.635;QD=23.32;ReadPosRankSum=1.698;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2388,270,0 chrIV 86606 . G T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,180:185:99:4042,447,0 chrIV 87227 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.16;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2916,315,0 chrIV 87312 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=18.61;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3085,330,0 chrIV 87326 . T A 2894 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=18.55;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2927,315,0 chrIV 87337 . A G 2481 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=16.43;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2514,288,0 chrIV 87353 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=15.77;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2288,249,0 chrIV 87458 . T C 5763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.001;QD=24.32;ReadPosRankSum=1.717;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5763,666,0 chrIV 87483 . G A 6129.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=25.02;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6129,669,0 chrIV 87523 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.6462;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.060;QD=23.03;ReadPosRankSum=-1.587;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4283,433,0 chrIV 87619 . T C 4522.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.55;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4522,519,0 chrIV 88023 . A T 1161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;DP=80;Dels=0.00;FS=1.808;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.338;QD=14.51;ReadPosRankSum=1.069;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:6,74:80:99:1194,152,0 chrIV 88024 . T A 1112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=80;Dels=0.01;FS=5.010;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.191;QD=13.90;ReadPosRankSum=0.534;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:5,74:79:99:1145,112,0 chrIV 88192 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=116;Dels=0.01;FS=6.590;HaplotypeScore=14.1188;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.669;QD=19.03;ReadPosRankSum=1.671;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2241,255,0 chrIV 88221 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=14.3794;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.62;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2476,264,0 chrIV 88301 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3170;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.100;QD=21.81;ReadPosRankSum=1.705;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2781,318,0 chrIV 88345 . C A 4188.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.27;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4188,462,0 chrIV 88760 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.93;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4173,450,0 chrIV 89546 . A G 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=190;Dels=0.00;FS=3.580;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.714;QD=22.35;ReadPosRankSum=-0.843;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4247,477,0 chrIV 89732 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=14.95;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1797,198,0 chrIV 89739 . T C 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=116;Dels=0.00;FS=5.422;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.949;QD=14.73;ReadPosRankSum=1.702;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:1742,198,0 chrIV 89896 . T G 2351 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.49;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2384,276,0 chrIV 89925 . A G 2028 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.43;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2061,234,0 chrIV 90257 . A C 4018.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.4675;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.06;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4018,453,0 chrIV 90638 . A C 3170 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.56;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3203,366,0 chrIV 90733 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.94;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2567,291,0 chrIV 90785 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=146;Dels=0.00;FS=9.203;HaplotypeScore=12.6602;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.851;QD=23.23;ReadPosRankSum=3.398;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:3392,390,0 chrIV 90868 . A C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.02;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.65;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3302,375,0 chrIV 90878 . A T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.65;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3676,399,0 chrIV 90975 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.01;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3154,336,0 chrIV 91000 . T C 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.485;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.254;QD=21.19;ReadPosRankSum=1.684;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3106,354,0 chrIV 91201 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=4.102;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.545;QD=21.40;ReadPosRankSum=1.636;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2366,267,0 chrIV 91318 . T C 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-1.106;QD=19.59;ReadPosRankSum=1.690;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1659,189,0 chrIV 91325 . G T 1703 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.04;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1736,189,0 chrIV 91335 . C G 1572 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.71;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1605,183,0 chrIV 91515 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.61;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2216,234,0 chrIV 91537 . A G 1978 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.02;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2011,237,0 chrIV 91592 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=135;Dels=0.00;FS=8.509;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.211;QD=20.38;ReadPosRankSum=2.359;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2784,318,0 chrIV 91959 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.7358;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.52;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3172,351,0 chrIV 92440 . T G 1326 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.39;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1359,159,0 chrIV 92514 . T A 772 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.39;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:805,90,0 chrIV 93521 . G C 3881.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.75;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3881,450,0 chrIV 93536 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.07;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3813,432,0 chrIV 93541 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.83;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3689,414,0 chrIV 94320 . T C 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=223;Dels=0.00;FS=11.561;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.634;QD=22.55;ReadPosRankSum=2.923;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:3,219:223:99:5028,579,0 chrIV 94379 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=186;Dels=0.00;FS=2.947;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.554;QD=22.43;ReadPosRankSum=2.369;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4172,474,0 chrIV 94538 . T G 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=3.784;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.566;QD=23.90;ReadPosRankSum=-1.025;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4684,534,0 chrIV 94649 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.92;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3461,378,0 chrIV 95033 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.02;FS=0.000;HaplotypeScore=11.8237;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.30;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3130,342,0 chrIV 95036 . C A 3150 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9107;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.31;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3183,354,0 chrIV 95862 . T A 919 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=17.67;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:952,105,0 chrIV 96116 . T G 2114 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.25;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2147,246,0 chrIV 96121 . G A 1993 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.34;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2026,231,0 chrIV 96124 . T A 2127 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.63;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2160,231,0 chrIV 96205 . T A 1987 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.58;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2020,219,0 chrIV 96217 . T C 2154 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=16.57;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2187,246,0 chrIV 96268 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.78;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2906,312,0 chrIV 96538 . G A 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.8412;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.069;QD=21.64;ReadPosRankSum=1.820;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2738,283,0 chrIV 96663 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.42;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2871,312,0 chrIV 96674 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.28;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2933,318,0 chrIV 96799 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=3.038;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.804;QD=21.27;ReadPosRankSum=2.411;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2756,318,0 chrIV 96804 . A G 2698 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.41;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2731,306,0 chrIV 96827 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.61;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2622,288,0 chrIV 97262 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.54;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3076,336,0 chrIV 97828 . T G 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=210;Dels=0.00;FS=5.567;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.356;QD=20.19;ReadPosRankSum=1.666;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4240,492,0 chrIV 97927 . A C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.546;QD=19.57;ReadPosRankSum=2.425;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3914,459,0 chrIV 97934 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.81;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3913,435,0 chrIV 98199 . A C 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=3.136;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.478;QD=18.34;ReadPosRankSum=1.699;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1977,222,0 chrIV 98290 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.52;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2434,276,0 chrIV 98304 . A G 2591 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.77;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2624,291,0 chrIV 98567 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.371;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.608;QD=22.87;ReadPosRankSum=-0.897;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2594,279,0 chrIV 99689 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.49;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3204,360,0 chrIV 99908 . C A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.85;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3299,360,0 chrIV 100309 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.585;QD=21.11;ReadPosRankSum=1.710;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3293,369,0 chrIV 100715 . A G 2468 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.57;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2501,285,0 chrIV 100723 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.57;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2794,303,0 chrIV 101068 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8447;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.63;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2742,306,0 chrIV 101117 . T A 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=20.5039;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.323;QD=14.49;ReadPosRankSum=4.323;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:8,115:124:99:1830,204,0 chrIV 101326 . T C 2727 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=14.5757;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.72;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2760,312,0 chrIV 101419 . T A 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.266;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.163;QD=24.61;ReadPosRankSum=1.707;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3445,378,0 chrIV 101644 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.31;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2666,291,0 chrIV 101773 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.30;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3216,351,0 chrIV 101871 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.44;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3435,378,0 chrIV 101960 . G C 4178.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.58;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4178,474,0 chrIV 102162 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.504;QD=20.80;ReadPosRankSum=1.710;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3287,372,0 chrIV 102172 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.25;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3056,354,0 chrIV 102484 . T G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.957;QD=22.16;ReadPosRankSum=1.680;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3003,339,0 chrIV 102615 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.5454;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.76;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3664,420,0 chrIV 102763 . G A 4689.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.21;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4689,531,0 chrIV 102841 . C T 5061.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5061,567,0 chrIV 103054 . T C 4647.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4647,528,0 chrIV 103456 . T C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.5535;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.627;QD=22.83;ReadPosRankSum=1.672;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2681,300,0 chrIV 104069 . A G 3020 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.04;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3053,345,0 chrIV 104854 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.99;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3269,360,0 chrIV 104927 . A C 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.641;DP=144;Dels=0.00;FS=3.038;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.659;QD=20.17;ReadPosRankSum=1.185;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,138:144:99:2938,315,0 chrIV 105114 . A G 2333 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.23;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2366,270,0 chrIV 105121 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.2276;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.95;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2458,261,0 chrIV 105197 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=146;Dels=0.00;FS=5.671;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.340;QD=20.69;ReadPosRankSum=2.910;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3054,348,0 chrIV 105227 . G C 2992 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.84;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3025,339,0 chrIV 105247 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.06;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2941,318,0 chrIV 105260 . T C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=145;Dels=0.00;FS=5.468;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-1.479;QD=17.46;ReadPosRankSum=2.854;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2565,291,0 chrIV 105348 . C G 2797 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.52;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2830,327,0 chrIV 105623 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.38;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3869,441,0 chrIV 105784 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.9841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3907,444,0 chrIV 105853 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;DP=220;Dels=0.00;FS=3.051;HaplotypeScore=27.5041;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.700;QD=20.30;ReadPosRankSum=1.085;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,213:220:99:4467,513,0 chrIV 106143 . C A 4791.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.2220;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.11;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4791,519,0 chrIV 106727 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.273;QD=22.26;ReadPosRankSum=1.686;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3361,378,0 chrIV 106840 . T G 3029 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.9266;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.42;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,150:156:99:3062,360,0 chrIV 106899 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=90.2613;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=17.25;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2431,264,0 chrIV 107966 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=218;Dels=0.00;FS=7.253;HaplotypeScore=13.6136;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.176;QD=22.33;ReadPosRankSum=2.415;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:4868,549,0 chrIV 107994 . T C 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=3.031;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.476;QD=22.48;ReadPosRankSum=2.403;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:2,207:212:99:4765,540,0 chrIV 108056 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=3.446;HaplotypeScore=8.1147;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.982;QD=22.15;ReadPosRankSum=1.710;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3522,390,0 chrIV 108281 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.38;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3188,354,0 chrIV 108611 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.95;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3200,354,0 chrIV 108917 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3506,387,0 chrIV 109331 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.96;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2690,291,0 chrIV 109370 . A G 2666 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.7964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2699,303,0 chrIV 109468 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.1323;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.74;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3846,423,0 chrIV 109555 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.5495;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.79;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3791,414,0 chrIV 109836 . A G 5223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=245;Dels=0.00;FS=6.713;HaplotypeScore=25.7330;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.938;QD=21.32;ReadPosRankSum=2.419;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:2,240:245:99:5223,606,0 chrIV 110209 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.6779;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.13;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3603,393,0 chrIV 110285 . C T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=24.9246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4088,444,0 chrIV 110696 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3495,393,0 chrIV 111349 . A G 2270 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=23.89;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2303,261,0 chrIV 111716 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.68;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2851,312,0 chrIV 111795 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.74;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3826,426,0 chrIV 111819 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.20;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3413,384,0 chrIV 111840 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.20;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3641,396,0 chrIV 112122 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;DP=178;Dels=0.00;FS=3.135;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.832;QD=20.28;ReadPosRankSum=0.264;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3609,373,0 chrIV 112137 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=9.6962;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.590;QD=21.34;ReadPosRankSum=1.713;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3905,435,0 chrIV 112233 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.74;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3656,420,0 chrIV 112308 . C T 5097.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.4807;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.50;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5097,549,0 chrIV 112929 . T A 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=144;Dels=0.00;FS=3.037;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.221;QD=19.47;ReadPosRankSum=2.381;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2836,324,0 chrIV 113136 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.979;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.666;QD=20.76;ReadPosRankSum=0.746;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2732,318,0 chrIV 113151 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.9523;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.16;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3017,342,0 chrIV 113458 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.8931;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.55;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2807,300,0 chrIV 113472 . A T 2639 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.94;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2672,297,0 chrIV 113547 . G A 2538 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.52;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2571,294,0 chrIV 113548 . T A 2707 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.443;QD=20.51;ReadPosRankSum=1.653;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2740,300,0 chrIV 113554 . T C 2616 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=139;Dels=0.00;FS=2.942;HaplotypeScore=4.3316;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-0.486;QD=18.82;ReadPosRankSum=2.414;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2649,297,0 chrIV 113961 . A G 5007.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.45;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5007,567,0 chrIV 114010 . T G 5606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=246;Dels=0.00;FS=4.880;HaplotypeScore=9.7793;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.404;QD=22.79;ReadPosRankSum=1.718;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,242:246:99:5606,630,0 chrIV 114136 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=21.54;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3243,354,0 chrIV 114147 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.77;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2998,339,0 chrIV 114170 . T G 2362 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.20;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2395,267,0 chrIV 114468 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1572,174,0 chrIV 114797 . T C 1524 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1557,177,0 chrIV 115526 . G C 4140.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.26;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4140,468,0 chrIV 115553 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.76;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4302,474,0 chrIV 115568 . C T 4155.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.75;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4155,456,0 chrIV 115646 . C T 4270.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.85;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4270,459,0 chrIV 116157 . C G 2071 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=11.9208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.57;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2104,243,0 chrIV 116482 . A G 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=198;Dels=0.00;FS=7.816;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.184;QD=22.96;ReadPosRankSum=2.425;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:4547,510,0 chrIV 116794 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.29;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3077,336,0 chrIV 116963 . C A 2577 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9033;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.41;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2610,300,0 chrIV 117860 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=17.41;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2592,294,0 chrIV 117891 . T C 2174 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=18.74;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2207,252,0 chrIV 118665 . T C 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.257;QD=21.20;ReadPosRankSum=1.700;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2365,270,0 chrIV 118699 . T C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4743;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.664;QD=21.41;ReadPosRankSum=1.674;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2602,294,0 chrIV 119010 . G C 3753.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3753,435,0 chrIV 120812 . T G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=154;Dels=0.00;FS=3.032;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.008;QD=22.47;ReadPosRankSum=2.402;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3461,387,0 chrIV 120963 . A G 2978 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3011,339,0 chrIV 120999 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3531,411,0 chrIV 121089 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.39;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2520,282,0 chrIV 121098 . A G 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.130;DP=123;Dels=0.00;FS=20.899;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.235;QD=20.04;ReadPosRankSum=3.358;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2498,285,0 chrIV 121354 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9178;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.46;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3562,387,0 chrIV 121469 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.57;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3387,372,0 chrIV 121586 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=19.64;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2370,261,0 chrIV 121593 . G A 2289 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=18.76;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2322,261,0 chrIV 121610 . T G 2208 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.81;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2241,249,0 chrIV 121624 . T C 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=138;Dels=0.00;FS=6.378;HaplotypeScore=8.8478;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=0.511;QD=16.95;ReadPosRankSum=2.396;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2372,267,0 chrIV 121811 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.08;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2647,303,0 chrIV 121990 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.44;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2070,225,0 chrIV 122142 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=80;Dels=0.00;FS=3.021;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.663;QD=22.01;ReadPosRankSum=2.327;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1794,204,0 chrIV 122163 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.4304;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.09;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2297,249,0 chrIV 122341 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.66;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2589,306,0 chrIV 122512 . A G 3885.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.4224;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.46;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3885,441,0 chrIV 123344 . A T 5076.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.5351;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.56;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5076,555,0 chrIV 123372 . A T 4854.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.37;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4854,519,0 chrIV 123418 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.96;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3437,393,0 chrIV 123436 . A T 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.067;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-1.710;QD=23.19;ReadPosRankSum=1.687;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3572,393,0 chrIV 123745 . A G 814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.141;QD=19.85;ReadPosRankSum=1.648;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,40:41:99:847,99,0 chrIV 124765 . A G 3470.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=208;Dels=0.00;FS=6.882;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=13;MQRankSum=4.085;QD=16.68;ReadPosRankSum=2.952;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:21,187:208:99:3470,377,0 chrIV 125066 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.79;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3082,333,0 chrIV 125130 . T C 3097 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.29;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3130,351,0 chrIV 125172 . G T 2595 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2628,288,0 chrIV 125573 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4187,456,0 chrIV 126283 . C T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.61;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3843,420,0 chrIV 126408 . G T 1705 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=16.72;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1738,201,0 chrIV 126667 . G C 1223 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.46;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1256,144,0 chrIV 127476 . T C 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=192;Dels=0.00;FS=6.227;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=0.659;QD=22.28;ReadPosRankSum=2.347;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4278,495,0 chrIV 127635 . G C 2272 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=21.04;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2305,258,0 chrIV 129270 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.49;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3969,432,0 chrIV 129783 . T C 4992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.3199;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.088;QD=21.99;ReadPosRankSum=1.717;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4992,570,0 chrIV 130517 . G T 2363 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.37;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2396,258,0 chrIV 130537 . A G 2252 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.75;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2285,258,0 chrIV 130640 . G A 2423 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.36;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2456,273,0 chrIV 130711 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.05;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2128,234,0 chrIV 130729 . T A 1881 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.59;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1914,207,0 chrIV 130742 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.23;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1918,210,0 chrIV 130869 . C A 1975 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.70;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2008,219,0 chrIV 130967 . C A 2797 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.93;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2830,306,0 chrIV 131084 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2743,309,0 chrIV 131276 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=143;Dels=0.00;FS=6.898;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.044;QD=22.28;ReadPosRankSum=2.328;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3219,369,0 chrIV 131512 . A G 2351 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2384,270,0 chrIV 131875 . T C 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.634;QD=23.27;ReadPosRankSum=1.711;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3816,438,0 chrIV 131909 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.46;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4256,465,0 chrIV 132259 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1544;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.34;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2602,276,0 chrIV 132560 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.3263;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.12;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2187,252,0 chrIV 133023 . C A 2444 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.7435;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.96;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2477,273,0 chrIV 133068 . A G 2268 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.68;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2301,258,0 chrIV 134228 . C A 5639.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.451;DP=273;Dels=0.00;FS=7.627;HaplotypeScore=17.5265;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=27;MQRankSum=3.778;QD=20.66;ReadPosRankSum=3.146;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:15,257:273:99:5639,568,0 chrIV 134550 . C T 6889.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=14.9357;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=23.67;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:6889,754,0 chrIV 134651 . C T 5565.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=19.9676;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.38;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5565,618,0 chrIV 134822 . T C 5593.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.76;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5593,627,0 chrIV 134836 . A G 5361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=250;Dels=0.00;FS=7.163;HaplotypeScore=10.7751;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.421;QD=21.44;ReadPosRankSum=2.410;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5361,603,0 chrIV 135397 . T C 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=114;Dels=0.00;FS=14.790;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.577;QD=17.33;ReadPosRankSum=2.363;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2009,240,0 chrIV 135705 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.66;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2730,309,0 chrIV 135769 . T G 3874.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.20;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3874,438,0 chrIV 136035 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.525;QD=19.45;ReadPosRankSum=1.680;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2601,306,0 chrIV 136129 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.88;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2439,273,0 chrIV 136521 . G A 6206.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=21.9736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-3.566e+03 GT:AD:DP:GQ:PL 1/1:0,273:279:99:6206,667,0 chrIV 136912 . C T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.3963;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.90;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4110,438,0 chrIV 136940 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.42;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3632,405,0 chrIV 137047 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.95;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2746,309,0 chrIV 137547 . G C 1252 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.69;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1285,147,0 chrIV 137806 . C A 793 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.87;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:826,90,0 chrIV 137820 . A C 674 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.74;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:707,78,0 chrIV 137875 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=2.18;SB=-5.480e+01 GT:AD:DP:GQ:PL 1/1:0,7:10:6:53,6,0 chrIV 137889 . A C 229 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=14.31;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:30:262,30,0 chrIV 138088 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.68;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2097,228,0 chrIV 139293 . G C 2823 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2856,327,0 chrIV 139499 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.56;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3025,342,0 chrIV 139681 . C A 2592 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2625,294,0 chrIV 139926 . G T 2680 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2713,297,0 chrIV 140600 . C A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5337;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.41;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3886,420,0 chrIV 140835 . A C 4315.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.2303;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.90;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4315,495,0 chrIV 141791 . T G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=152;Dels=0.01;FS=2.928;HaplotypeScore=8.3907;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.713;QD=20.64;ReadPosRankSum=2.417;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3170,354,0 chrIV 141806 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.89;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3255,366,0 chrIV 142000 . T C 4877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.652;QD=24.14;ReadPosRankSum=1.715;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4877,546,0 chrIV 142762 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.14;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3721,432,0 chrIV 143179 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.1767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.504;QD=23.04;ReadPosRankSum=1.694;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4239,477,0 chrIV 143253 . C T 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3901;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.215;QD=23.71;ReadPosRankSum=-1.137;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3210,333,0 chrIV 143335 . T C 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=4.195;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.218;QD=19.40;ReadPosRankSum=1.687;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3060,348,0 chrIV 143626 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.0630;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.21;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3045,339,0 chrIV 143902 . C G 2142 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.60;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2175,258,0 chrIV 144237 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3353,366,0 chrIV 144733 . A G 2974 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.79;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3007,342,0 chrIV 144796 . G T 2904 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.17;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2937,321,0 chrIV 144812 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.57;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3031,330,0 chrIV 145096 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.224;QD=22.10;ReadPosRankSum=0.906;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:4863,555,0 chrIV 145686 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.164;QD=21.26;ReadPosRankSum=2.346;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3052,354,0 chrIV 145687 . T G 2998 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.72;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3031,336,0 chrIV 145805 . T G 2665 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.84;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2698,306,0 chrIV 146216 . T C 5334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=261;Dels=0.00;FS=4.265;HaplotypeScore=12.5408;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.863;QD=20.44;ReadPosRankSum=1.719;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:5334,624,0 chrIV 146231 . T A 5597.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=6.6514;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.61;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5597,615,0 chrIV 146330 . A G 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=214;Dels=0.00;FS=5.965;HaplotypeScore=16.0821;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-2.144;QD=21.63;ReadPosRankSum=2.919;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:3,208:214:99:4628,513,0 chrIV 146432 . T C 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=210;Dels=0.00;FS=2.999;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.590;QD=21.72;ReadPosRankSum=2.414;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4562,519,0 chrIV 146582 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=4.268;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.550;QD=20.25;ReadPosRankSum=1.712;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3463,399,0 chrIV 147362 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.03;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3891,420,0 chrIV 147374 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=193;Dels=0.00;FS=2.295;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.318;QD=19.55;ReadPosRankSum=2.922;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:3774,423,0 chrIV 147377 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=2.959;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-1.381;QD=18.78;ReadPosRankSum=2.376;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3755,426,0 chrIV 147778 . C A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.0139;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.05;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4112,453,0 chrIV 147846 . T G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=125;Dels=0.00;FS=7.527;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.470;QD=18.01;ReadPosRankSum=2.330;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2284,255,0 chrIV 147986 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=184;Dels=0.00;FS=15.417;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.451;QD=20.23;ReadPosRankSum=3.796;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:5,178:184:99:3722,423,0 chrIV 148010 . T G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=182;Dels=0.00;FS=2.881;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.116;QD=20.59;ReadPosRankSum=2.422;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3747,423,0 chrIV 148274 . T C 4940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=249;Dels=0.00;FS=10.009;HaplotypeScore=10.6321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.612;QD=19.84;ReadPosRankSum=2.312;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:4940,584,0 chrIV 148555 . G A 6699.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=14.9934;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.18;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6699,732,0 chrIV 148598 . A T 6369.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=15.5435;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.95;SB=-3.715e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:6369,717,0 chrIV 148667 . A G 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.121;DP=245;Dels=0.00;FS=10.133;HaplotypeScore=26.9292;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.388;QD=19.41;ReadPosRankSum=4.115;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:6,239:245:99:4755,537,0 chrIV 148986 . T C 1730 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1763,201,0 chrIV 149500 . A G 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=233;Dels=0.00;FS=9.105;HaplotypeScore=15.3285;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.617;QD=20.61;ReadPosRankSum=3.408;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:4,229:233:99:4802,552,0 chrIV 149608 . G A 8517.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=14.8378;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.47;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,377:379:99:8517,975,0 chrIV 149689 . T C 6222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=11.0065;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.279;QD=22.54;ReadPosRankSum=1.719;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:6222,705,0 chrIV 149839 . G A 7789.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=23.6908;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:0,346:350:99:7789,852,0 chrIV 150172 . A G 6032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=292;Dels=0.00;FS=3.147;HaplotypeScore=12.9104;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.077;QD=20.66;ReadPosRankSum=1.696;SB=-3.477e+03 GT:AD:DP:GQ:PL 1/1:1,290:292:99:6032,705,0 chrIV 150223 . A G 6361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=296;Dels=0.00;FS=2.933;HaplotypeScore=19.6706;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.844;QD=21.49;ReadPosRankSum=2.366;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:2,293:296:99:6361,717,0 chrIV 150307 . A G 6508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=21.3077;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.248;QD=20.21;ReadPosRankSum=2.419;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:2,320:322:99:6508,753,0 chrIV 150382 . G C 4704.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.29;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4704,543,0 chrIV 150486 . G A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.74;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4130,447,0 chrIV 150493 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.40;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4044,438,0 chrIV 150567 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.3756;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.04;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3940,441,0 chrIV 151093 . G A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5044;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4485,486,0 chrIV 152053 . A G 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.571;QD=22.55;ReadPosRankSum=1.696;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4397,510,0 chrIV 152269 . C T 4748.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.62;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4748,534,0 chrIV 152758 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.9490;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.322;QD=20.31;ReadPosRankSum=1.676;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:3819,438,0 chrIV 153028 . G A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.82;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4144,453,0 chrIV 153229 . T A 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=3.126;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.351;QD=23.09;ReadPosRankSum=1.714;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4410,486,0 chrIV 153267 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.98;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4001,435,0 chrIV 153283 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.336;QD=20.38;ReadPosRankSum=1.714;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3913,438,0 chrIV 153397 . A G 5183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=233;Dels=0.00;FS=7.691;HaplotypeScore=9.8651;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.799;QD=22.24;ReadPosRankSum=2.418;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5183,588,0 chrIV 153415 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=212;Dels=0.00;FS=2.970;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.506;QD=21.31;ReadPosRankSum=2.403;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4518,519,0 chrIV 153845 . T C 5126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=226;Dels=0.00;FS=6.063;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.314;QD=22.68;ReadPosRankSum=2.951;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:5126,564,0 chrIV 154012 . C G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.40;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3349,381,0 chrIV 154048 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.946;QD=17.32;ReadPosRankSum=2.420;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:2942,327,0 chrIV 154129 . A C 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=132;Dels=0.00;FS=2.706;HaplotypeScore=16.3658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.910;QD=21.35;ReadPosRankSum=2.281;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2851,321,0 chrIV 155368 . C A 3920.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.66;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3920,447,0 chrIV 155836 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.85;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1872,213,0 chrIV 155900 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.58;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1660,192,0 chrIV 156500 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=117;Dels=0.00;FS=3.606;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.192;QD=21.40;ReadPosRankSum=1.673;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2537,297,0 chrIV 156591 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.9625;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.96;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3581,402,0 chrIV 157148 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.31;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2509,285,0 chrIV 157424 . T C 2492 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.43;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2525,294,0 chrIV 157554 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.578;QD=23.13;ReadPosRankSum=1.694;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2115,243,0 chrIV 157843 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.09;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2688,306,0 chrIV 157844 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.97;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2697,306,0 chrIV 157927 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.28;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1221,138,0 chrIV 158137 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.52;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2687,282,0 chrIV 158474 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=177;Dels=0.00;FS=6.563;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.490;QD=19.76;ReadPosRankSum=2.421;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:2,172:177:99:3498,396,0 chrIV 158505 . T A 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.433;QD=20.59;ReadPosRankSum=1.709;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3163,345,0 chrIV 158510 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.239;DP=161;Dels=0.00;FS=9.113;HaplotypeScore=5.6206;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.017;QD=19.02;ReadPosRankSum=3.305;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:4,155:161:99:3095,351,0 chrIV 158749 . C T 5100.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.97;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5100,561,0 chrIV 158768 . A G 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=193;Dels=0.01;FS=6.858;HaplotypeScore=7.2237;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.624;QD=21.38;ReadPosRankSum=2.360;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4127,468,0 chrIV 158959 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.456;QD=18.26;ReadPosRankSum=1.712;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3156,360,0 chrIV 158965 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=160;Dels=0.00;FS=5.242;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=-1.413;QD=18.10;ReadPosRankSum=3.404;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:4,155:160:99:2929,336,0 chrIV 158981 . A C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-1.058;QD=18.07;ReadPosRankSum=1.709;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:2762,318,0 chrIV 159017 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.8496;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-1.428;QD=17.16;ReadPosRankSum=1.709;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2573,291,0 chrIV 159238 . C A 2534 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.42;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2567,291,0 chrIV 159255 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.11;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2321,261,0 chrIV 159284 . A C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=102;Dels=0.00;FS=3.279;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.208;QD=20.07;ReadPosRankSum=1.594;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2080,240,0 chrIV 159315 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.97;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2744,309,0 chrIV 159567 . C A 3047 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.91;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3080,345,0 chrIV 159777 . C T 5023.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.27;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:5023,543,0 chrIV 159930 . C T 4843.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.84;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4843,537,0 chrIV 160360 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.31;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3023,327,0 chrIV 160374 . T C 3113 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.1563;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.32;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3146,360,0 chrIV 160428 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.23;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2729,294,0 chrIV 160479 . A G 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=3.736;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.499;QD=22.08;ReadPosRankSum=1.666;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2329,264,0 chrIV 160731 . A G 1517 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.23;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1550,174,0 chrIV 161006 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.159;QD=20.41;ReadPosRankSum=2.939;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2360,264,0 chrIV 161007 . T C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.965;QD=19.46;ReadPosRankSum=2.407;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2290,261,0 chrIV 161136 . C A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.95;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3545,390,0 chrIV 161421 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.23;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2918,330,0 chrIV 162357 . C T 4782.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.2937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4782,519,0 chrIV 162718 . A T 2757 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.23;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2790,303,0 chrIV 162745 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.30;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3057,333,0 chrIV 162819 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.4867;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.027;QD=23.14;ReadPosRankSum=1.678;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4466,513,0 chrIV 163031 . T C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=201;Dels=0.00;FS=10.583;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.077;QD=21.03;ReadPosRankSum=2.944;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:3,194:201:99:4227,474,0 chrIV 163324 . A G 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-1.108;QD=19.38;ReadPosRankSum=1.701;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2184,252,0 chrIV 163327 . C A 2188 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.07;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2221,252,0 chrIV 163439 . T C 2660 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.991;DP=148;Dels=0.00;FS=4.676;HaplotypeScore=2.6934;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=2.416;QD=17.97;ReadPosRankSum=4.137;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:6,142:148:99:2693,306,0 chrIV 163443 . G C 2532 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=16.44;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2565,297,0 chrIV 163447 . G A 2632 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=6.990;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;MQRankSum=0.056;QD=16.76;ReadPosRankSum=-0.056;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,154:157:99:2665,303,0 chrIV 163455 . A T 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=175;Dels=0.00;FS=14.080;HaplotypeScore=9.7004;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=0.779;QD=15.89;ReadPosRankSum=2.379;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,173:175:99:2813,315,0 chrIV 163695 . A G 5954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=13.5111;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=0.713;QD=20.53;ReadPosRankSum=1.684;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:1,288:290:99:5954,669,0 chrIV 163809 . A G 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=17.4628;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.967;QD=17.39;ReadPosRankSum=1.706;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:4644,531,0 chrIV 163842 . C A 4616.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=18.46;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:4616,507,0 chrIV 163851 . G A 4290.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=18.49;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4290,471,0 chrIV 163869 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=19.03;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3711,411,0 chrIV 163896 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=17.62;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3294,360,0 chrIV 163902 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=18.43;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3239,345,0 chrIV 163967 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=140;Dels=0.00;FS=2.783;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.686;QD=18.41;ReadPosRankSum=2.414;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2611,300,0 chrIV 164096 . T C 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=4.130;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-1.378;QD=20.35;ReadPosRankSum=1.693;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1844,210,0 chrIV 164298 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=4.853;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.149;QD=25.22;ReadPosRankSum=1.700;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2732,309,0 chrIV 164984 . C T 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;DP=96;Dels=0.01;FS=4.214;HaplotypeScore=18.2833;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;MQRankSum=1.404;QD=19.53;ReadPosRankSum=1.513;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1908,213,0 chrIV 165265 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2946,336,0 chrIV 165386 . T C 3176 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.03;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3209,360,0 chrIV 165509 . T C 2957 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.3537;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.40;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2990,342,0 chrIV 165551 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3773,408,0 chrIV 166022 . G T 2699 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.07;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2732,297,0 chrIV 166634 . T C 2944 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.49;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2977,345,0 chrIV 166895 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.14;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3549,390,0 chrIV 167048 . A C 4619.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.0176;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.69;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4619,516,0 chrIV 167295 . C T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.75;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4749,513,0 chrIV 167438 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.53;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3537,390,0 chrIV 167695 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6037;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.91;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3309,369,0 chrIV 167709 . C A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.55;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3405,366,0 chrIV 167826 . C T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.78;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4446,489,0 chrIV 169331 . T C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=118;Dels=0.00;FS=3.643;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.939;QD=19.64;ReadPosRankSum=1.644;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2351,276,0 chrIV 169931 . C A 222 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=9.3066;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.042;QD=14.80;ReadPosRankSum=-0.810;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:1,14:15:30:255,30,0 chrIV 170008 . T C 1410 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1443,165,0 chrIV 170532 . G A 4663.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7191;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.04;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4663,501,0 chrIV 170953 . G A 2548 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.07;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2581,282,0 chrIV 171661 . T A 3120 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.94;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3153,357,0 chrIV 171817 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.590;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.701;QD=20.31;ReadPosRankSum=1.701;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2308,273,0 chrIV 172830 . C T 4152.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.0147;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.86;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4152,462,0 chrIV 172966 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.64;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4262,480,0 chrIV 173056 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0888;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.89;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3433,384,0 chrIV 173074 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=4.219;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.445;QD=22.50;ReadPosRankSum=1.683;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3183,372,0 chrIV 173380 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3439,372,0 chrIV 174831 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.56;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3262,357,0 chrIV 174887 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.64;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2326,258,0 chrIV 174905 . T C 1929 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.68;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1962,222,0 chrIV 174995 . T C 2495 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.49;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2528,288,0 chrIV 174996 . T C 2382 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.715;QD=18.90;ReadPosRankSum=1.650;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2415,279,0 chrIV 174998 . G T 2492 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.17;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2525,279,0 chrIV 175763 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.42;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3274,366,0 chrIV 175847 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.75;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3095,357,0 chrIV 175853 . T C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.430;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.618;QD=20.05;ReadPosRankSum=1.709;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3100,357,0 chrIV 175910 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.43;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3142,351,0 chrIV 175931 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.337;QD=20.29;ReadPosRankSum=1.708;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2955,339,0 chrIV 176012 . C G 3393.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.44;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3393,381,0 chrIV 176019 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=173;Dels=0.00;FS=8.099;HaplotypeScore=7.1259;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=1.193;QD=19.34;ReadPosRankSum=0.393;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3346,381,0 chrIV 176132 . A G 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=220;Dels=0.00;FS=7.929;HaplotypeScore=21.8706;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.029;QD=21.87;ReadPosRankSum=2.336;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:2,214:220:99:4811,546,0 chrIV 176206 . A G 5746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=3.553;HaplotypeScore=9.7387;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.834;QD=23.08;ReadPosRankSum=1.648;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5746,642,0 chrIV 176273 . C T 5210.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=19.0181;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.17;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5210,588,0 chrIV 176423 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3785,432,0 chrIV 176496 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=168;Dels=0.00;FS=2.534;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.247;QD=19.88;ReadPosRankSum=2.898;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3339,387,0 chrIV 176519 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.7542;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.95;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3819,423,0 chrIV 176588 . T C 2202 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.20;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2235,264,0 chrIV 176628 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.57;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1966,213,0 chrIV 176673 . G T 2074 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2107,234,0 chrIV 177160 . T C 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.035;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.310;QD=20.47;ReadPosRankSum=1.672;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3603,411,0 chrIV 177756 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.75;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3458,387,0 chrIV 177780 . T C 3001 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.23;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3034,339,0 chrIV 177807 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.0020;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.24;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3402,372,0 chrIV 178219 . A C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=3.565;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.042;QD=21.92;ReadPosRankSum=1.677;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2795,315,0 chrIV 178252 . A G 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.926;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.532;QD=22.76;ReadPosRankSum=1.646;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2787,315,0 chrIV 178306 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;DP=117;Dels=0.00;FS=4.247;HaplotypeScore=8.0371;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.140;QD=20.89;ReadPosRankSum=0.252;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2477,261,0 chrIV 179632 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3382;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.39;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2570,285,0 chrIV 179694 . A G 2279 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.72;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2312,267,0 chrIV 179827 . G T 2752 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2785,312,0 chrIV 179903 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2758,309,0 chrIV 180800 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=155;Dels=0.00;FS=4.771;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.532;QD=22.33;ReadPosRankSum=1.687;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3461,393,0 chrIV 181678 . A G 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.4390;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.704;QD=19.64;ReadPosRankSum=2.393;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4302,492,0 chrIV 181807 . C A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3825,423,0 chrIV 181859 . G C 4051.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.55;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4051,456,0 chrIV 181988 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.71;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3376,366,0 chrIV 182019 . G C 3756.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.22;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3756,417,0 chrIV 182862 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=179;Dels=0.00;FS=5.684;HaplotypeScore=11.1652;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.667;QD=20.97;ReadPosRankSum=2.938;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3754,420,0 chrIV 183023 . T A 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=4.365;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.143;QD=22.16;ReadPosRankSum=1.709;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3391,366,0 chrIV 183468 . A G 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=131;Dels=0.00;FS=7.119;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.230;QD=21.97;ReadPosRankSum=2.318;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2911,330,0 chrIV 183645 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.9878;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.31;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4015,444,0 chrIV 183720 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.56;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4264,462,0 chrIV 183726 . G A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.6850;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.44;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4130,468,0 chrIV 183759 . G T 4611.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.6424;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.79;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4611,510,0 chrIV 183901 . G A 4796.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.5416;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.52;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4796,519,0 chrIV 183975 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.8075;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.20;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3562,390,0 chrIV 184221 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2150,243,0 chrIV 184320 . A G 2415 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2448,276,0 chrIV 184727 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.945;QD=19.15;ReadPosRankSum=1.673;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3389,387,0 chrIV 184738 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.30;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3593,402,0 chrIV 184859 . A T 2491 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.73;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2524,291,0 chrIV 184860 . T A 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.130;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.732;QD=19.85;ReadPosRankSum=1.653;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2653,294,0 chrIV 184999 . A G 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=197;Dels=0.00;FS=4.327;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.430;QD=23.39;ReadPosRankSum=1.679;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4607,519,0 chrIV 185105 . G A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.59;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4426,492,0 chrIV 185143 . T A 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.321;QD=24.95;ReadPosRankSum=1.679;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4841,537,0 chrIV 185244 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.6659;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.10;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4133,474,0 chrIV 185643 . G T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.17;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4147,450,0 chrIV 185762 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9121;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.31;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2911,318,0 chrIV 185908 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0049;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.56;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1822,204,0 chrIV 186001 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.58;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1704,189,0 chrIV 186485 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2053,219,0 chrIV 186841 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2847,318,0 chrIV 187054 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.73;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3709,408,0 chrIV 187156 . G A 4869.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.10;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4869,540,0 chrIV 187696 . G T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.95;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4838,537,0 chrIV 187789 . C T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.0747;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.09;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4157,450,0 chrIV 187843 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3694,420,0 chrIV 187954 . A G 2997 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3030,348,0 chrIV 188103 . C G 1915 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1948,225,0 chrIV 188469 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=4.460;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.328;QD=20.77;ReadPosRankSum=1.662;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3128,351,0 chrIV 190810 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.25;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2189,243,0 chrIV 190820 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.87;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2239,243,0 chrIV 191004 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.87;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4128,459,0 chrIV 192225 . A C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.173;QD=23.00;ReadPosRankSum=1.687;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3565,414,0 chrIV 192449 . A C 1858 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1891,213,0 chrIV 193161 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.653;QD=21.96;ReadPosRankSum=1.692;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3908,447,0 chrIV 193231 . A G 4872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=220;Dels=0.00;FS=3.004;HaplotypeScore=13.4961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.241;QD=22.15;ReadPosRankSum=2.416;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:4872,552,0 chrIV 193723 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.79;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3355,369,0 chrIV 194241 . T C 1822 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.44;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1855,210,0 chrIV 195160 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.4601;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.64;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3044,345,0 chrIV 195231 . A T 5106.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.03;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5106,558,0 chrIV 195474 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=182;Dels=0.00;FS=7.619;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.520;QD=20.88;ReadPosRankSum=2.423;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3800,444,0 chrIV 196150 . C A 2725 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2758,300,0 chrIV 196186 . A G 3131 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3164,357,0 chrIV 196482 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1720,195,0 chrIV 196851 . A G 5678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=246;Dels=0.00;FS=3.417;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.845;QD=23.08;ReadPosRankSum=1.718;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:5678,633,0 chrIV 198659 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.56;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4850,522,0 chrIV 198685 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.81;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4338,504,0 chrIV 198734 . T C 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=181;Dels=0.00;FS=3.028;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.400;QD=21.91;ReadPosRankSum=2.395;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3966,456,0 chrIV 198778 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.9752;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.33;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4479,492,0 chrIV 198878 . C T 6374.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=34.6884;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.53;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6374,711,0 chrIV 199316 . T C 5412.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.82;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5412,606,0 chrIV 199393 . G A 6128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.680;QD=22.53;ReadPosRankSum=1.719;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:1,267:272:99:6128,661,0 chrIV 200025 . G T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.63;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4074,444,0 chrIV 200151 . T C 4831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.8021;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.516;QD=21.19;ReadPosRankSum=1.717;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:1,224:228:99:4831,555,0 chrIV 200193 . A G 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=208;Dels=0.00;FS=11.019;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.576;QD=23.31;ReadPosRankSum=2.937;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:3,203:208:99:4848,549,0 chrIV 200220 . C T 4262.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.55;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4262,480,0 chrIV 200994 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.609;QD=22.95;ReadPosRankSum=1.675;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4199,489,0 chrIV 201329 . C T 5016.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=20.8142;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.80;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5016,543,0 chrIV 201393 . C T 5480.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.12;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5480,615,0 chrIV 202117 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=6.145;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.161;QD=21.70;ReadPosRankSum=2.366;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3819,426,0 chrIV 202127 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.87;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3987,444,0 chrIV 202229 . T G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.956;QD=21.49;ReadPosRankSum=1.738;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3826,441,0 chrIV 202572 . G C 3170 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.9213;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.32;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3203,363,0 chrIV 202877 . T A 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=105;Dels=0.00;FS=3.491;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.204;QD=19.11;ReadPosRankSum=1.600;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2040,228,0 chrIV 202902 . C T 1926 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.03;FS=0.000;HaplotypeScore=5.3569;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=17.83;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1959,213,0 chrIV 202959 . T C 3025 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.8914;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.08;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3058,345,0 chrIV 203221 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.0437;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.93;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3685,414,0 chrIV 203329 . C T 4892.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.08;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4892,534,0 chrIV 203389 . A C 3892.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0356;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.89;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3892,441,0 chrIV 203446 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.56;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3701,402,0 chrIV 203795 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.07;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3345,363,0 chrIV 203866 . G A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.38;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3849,426,0 chrIV 203904 . A C 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.892;QD=22.09;ReadPosRankSum=1.712;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3733,426,0 chrIV 204040 . C T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.02;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3251,354,0 chrIV 204077 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2972,318,0 chrIV 204145 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2888,327,0 chrIV 204262 . T C 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.680;QD=21.22;ReadPosRankSum=1.680;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2855,330,0 chrIV 204319 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.229;QD=22.55;ReadPosRankSum=1.704;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2874,330,0 chrIV 204376 . G C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3295,372,0 chrIV 204805 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4167,450,0 chrIV 205237 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2102,228,0 chrIV 205528 . T C 6836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.749;DP=291;Dels=0.00;FS=2.314;HaplotypeScore=22.9855;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-0.850;QD=23.49;ReadPosRankSum=3.830;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:5,285:291:99:6836,792,0 chrIV 205699 . G A 1845.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DP=517;Dels=0.00;FS=20.937;HaplotypeScore=21.5790;MLEAC=1;MLEAF=0.500;MQ=41.19;MQ0=0;MQRankSum=-5.865;QD=3.57;ReadPosRankSum=-1.158;SB=-1.127e+03 GT:AD:DP:GQ:PL 0/1:326,190:517:99:1875,0,2267 chrIV 205702 . A G 1362.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;DP=488;Dels=0.00;FS=31.129;HaplotypeScore=21.4695;MLEAC=1;MLEAF=0.500;MQ=42.02;MQ0=0;MQRankSum=-8.386;QD=2.79;ReadPosRankSum=-0.520;SB=-7.500e+02 GT:AD:DP:GQ:PL 0/1:337,148:488:99:1392,0,2730 chrIV 205703 . G C 1379.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;DP=487;Dels=0.00;FS=28.491;HaplotypeScore=19.8922;MLEAC=1;MLEAF=0.500;MQ=42.11;MQ0=0;MQRankSum=-7.450;QD=2.83;ReadPosRankSum=-0.922;SB=-7.350e+02 GT:AD:DP:GQ:PL 0/1:342,143:487:99:1409,0,2752 chrIV 205704 . A T 1407.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DP=486;Dels=0.00;FS=24.537;HaplotypeScore=20.6809;MLEAC=1;MLEAF=0.500;MQ=42.35;MQ0=0;MQRankSum=-7.717;QD=2.90;ReadPosRankSum=-2.487;SB=-7.470e+02 GT:AD:DP:GQ:PL 0/1:347,139:486:99:1437,0,2951 chrIV 205709 . G C 1011.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;DP=503;Dels=0.00;FS=13.442;HaplotypeScore=18.3030;MLEAC=1;MLEAF=0.500;MQ=43.65;MQ0=0;MQRankSum=-7.852;QD=2.01;ReadPosRankSum=-4.069;SB=-6.610e+02 GT:AD:DP:GQ:PL 0/1:380,120:503:99:1041,0,3601 chrIV 205710 . A T 1074.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;DP=505;Dels=0.00;FS=14.365;HaplotypeScore=19.9584;MLEAC=1;MLEAF=0.500;MQ=43.72;MQ0=0;MQRankSum=-8.217;QD=2.13;ReadPosRankSum=-5.038;SB=-7.010e+02 GT:AD:DP:GQ:PL 0/1:383,122:505:99:1104,0,3731 chrIV 205711 . A T 1004.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.956;DP=513;Dels=0.00;FS=16.474;HaplotypeScore=22.3244;MLEAC=1;MLEAF=0.500;MQ=43.96;MQ0=0;MQRankSum=-9.006;QD=1.96;ReadPosRankSum=-5.512;SB=-6.400e+02 GT:AD:DP:GQ:PL 0/1:390,123:513:99:1034,0,3978 chrIV 205718 . G A 4686.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.144;DP=545;Dels=0.00;FS=14.129;HaplotypeScore=22.9730;MLEAC=1;MLEAF=0.500;MQ=45.01;MQ0=0;MQRankSum=7.510;QD=8.60;ReadPosRankSum=8.699;SB=-3.963e+03 GT:AD:DP:GQ:PL 0/1:121,424:545:99:4686,0,812 chrIV 205720 . T G 489.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.954;DP=537;Dels=0.00;FS=6.466;HaplotypeScore=19.8183;MLEAC=1;MLEAF=0.500;MQ=45.73;MQ0=0;MQRankSum=-8.397;QD=0.91;ReadPosRankSum=-7.954;SB=-3.420e+02 GT:AD:DP:GQ:PL 0/1:433,103:537:99:519,0,4911 chrIV 205723 . C A 310.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.817;DP=530;Dels=0.00;FS=1.420;HaplotypeScore=25.6853;MLEAC=1;MLEAF=0.500;MQ=46.75;MQ0=0;MQRankSum=-8.350;QD=0.58;ReadPosRankSum=-8.135;SB=-2.240e+02 GT:AD:DP:GQ:PL 0/1:435,86:530:99:340,0,4601 chrIV 205726 . A G 181.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.148;DP=528;Dels=0.00;FS=0.465;HaplotypeScore=32.5015;MLEAC=1;MLEAF=0.500;MQ=47.86;MQ0=0;MQRankSum=-8.381;QD=0.34;ReadPosRankSum=-7.480;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:456,72:528:99:211,0,5231 chrIV 205825 . A T 4695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=247;Dels=0.00;FS=2.699;HaplotypeScore=14.4238;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;MQRankSum=-1.426;QD=19.01;ReadPosRankSum=2.400;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:4695,531,0 chrIV 205828 . T C 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.552;DP=233;Dels=0.00;FS=1.355;HaplotypeScore=16.0210;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;MQRankSum=-0.974;QD=17.29;ReadPosRankSum=-0.532;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:9,222:233:99:4029,393,0 chrIV 205843 . T C 425.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.077;DP=221;Dels=0.00;FS=0.553;HaplotypeScore=9.9736;MLEAC=1;MLEAF=0.500;MQ=37.29;MQ0=0;MQRankSum=-1.567;QD=1.92;ReadPosRankSum=-4.942;SB=-3.900e+02 GT:AD:DP:GQ:PL 0/1:144,77:221:99:455,0,2088 chrIV 205849 . C T 3009 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=213;Dels=0.00;FS=4.867;HaplotypeScore=15.0638;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;MQRankSum=-2.750;QD=14.13;ReadPosRankSum=-3.653;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:5,208:213:99:3042,266,0 chrIV 205852 . G A 1337.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=10.802;DP=231;Dels=0.00;FS=4.143;HaplotypeScore=19.9963;MLEAC=1;MLEAF=0.500;MQ=36.84;MQ0=0;MQRankSum=-0.701;QD=5.79;ReadPosRankSum=2.707;SB=-6.240e+02 GT:AD:DP:GQ:PL 0/1:106,124:231:99:1367,0,1241 chrIV 205857 . A C 776.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.346;DP=226;Dels=0.00;FS=2.753;HaplotypeScore=20.5651;MLEAC=1;MLEAF=0.500;MQ=37.65;MQ0=0;MQRankSum=-1.985;QD=3.43;ReadPosRankSum=-5.501;SB=-4.320e+02 GT:AD:DP:GQ:PL 0/1:155,70:226:99:806,0,1860 chrIV 205861 . T A 252.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.463;DP=215;Dels=0.00;FS=2.222;HaplotypeScore=21.4788;MLEAC=1;MLEAF=0.500;MQ=38.24;MQ0=0;MQRankSum=-3.292;QD=1.17;ReadPosRankSum=-8.196;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:165,50:215:99:282,0,2235 chrIV 205870 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=201;Dels=0.00;FS=1.749;HaplotypeScore=30.6011;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;MQRankSum=-2.994;QD=14.68;ReadPosRankSum=3.707;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:6,189:201:99:2984,329,0 chrIV 206254 . G A 5375.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.9864;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.59;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5375,597,0 chrIV 207022 . C T 5523.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.3149;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.83;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5523,600,0 chrIV 207223 . G C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=19.7677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,177:184:99:4009,465,0 chrIV 207466 . T C 5392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=248;Dels=0.00;FS=6.778;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.142;QD=21.74;ReadPosRankSum=2.410;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:2,245:248:99:5392,621,0 chrIV 208660 . C T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.21;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4176,459,0 chrIV 209035 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4267,477,0 chrIV 210091 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3317,369,0 chrIV 210454 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.87;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3564,399,0 chrIV 210594 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1937,213,0 chrIV 211121 . C T 1582 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.28;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1615,177,0 chrIV 211127 . A G 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.396;QD=22.70;ReadPosRankSum=1.584;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1622,186,0 chrIV 211169 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.09;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1643,192,0 chrIV 211275 . G A 894 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:927,105,0 chrIV 211301 . C T 597 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.66;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:69:630,69,0 chrIV 211432 . T C 3441.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.230;QD=24.93;ReadPosRankSum=1.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3441,396,0 chrIV 211460 . G A 3676.01 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3676,396,0 chrIV 211831 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.7398;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.078;QD=18.86;ReadPosRankSum=2.357;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4054,456,0 chrIV 211876 . G T 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.9028;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.507;QD=17.24;ReadPosRankSum=1.645;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:3465,384,0 chrIV 211882 . C G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=16.93;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:3249,372,0 chrIV 211933 . A G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.443;QD=16.84;ReadPosRankSum=1.672;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:2947,336,0 chrIV 211978 . T C 2712 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.09;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2745,312,0 chrIV 212036 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.94;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2441,279,0 chrIV 212222 . A G 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=71.8568;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;MQRankSum=-0.953;QD=18.74;ReadPosRankSum=1.689;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1532,174,0 chrIV 212251 . A G 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=0.524;QD=17.02;ReadPosRankSum=1.692;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1514,174,0 chrIV 212267 . A G 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-0.689;QD=17.66;ReadPosRankSum=1.695;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1675,189,0 chrIV 212555 . C T 818 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.53;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:93:851,93,0 chrIV 212616 . T C 1213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=54;Dels=0.00;FS=2.800;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.580;QD=22.46;ReadPosRankSum=0.939;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1246,144,0 chrIV 212682 . T A 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=67;Dels=0.00;FS=2.533;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.621;QD=22.06;ReadPosRankSum=2.804;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1511,171,0 chrIV 214052 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.3849;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.42;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3856,432,0 chrIV 214494 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=5.069;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.929;QD=23.04;ReadPosRankSum=1.686;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3479,399,0 chrIV 214858 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.25;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4186,453,0 chrIV 214911 . A G 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=205;Dels=0.00;FS=2.919;HaplotypeScore=15.3044;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.288;QD=21.37;ReadPosRankSum=2.378;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4381,495,0 chrIV 215091 . G A 5100.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.2756;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.08;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5100,552,0 chrIV 215967 . G C 4157.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.9566;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.32;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4157,477,0 chrIV 216258 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8834;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.58;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3119,342,0 chrIV 216399 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2996,318,0 chrIV 217109 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.35;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3162,339,0 chrIV 217342 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.59;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2416,273,0 chrIV 217405 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.38;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2581,282,0 chrIV 217435 . A T 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=113;Dels=0.00;FS=4.403;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=1.671;QD=16.90;ReadPosRankSum=-1.732;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1943,207,0 chrIV 217447 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.45;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1958,225,0 chrIV 217557 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.69;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3930,420,0 chrIV 218010 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=1;QD=24.78;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3271,363,0 chrIV 218346 . A G 2098 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=9;MQRankSum=1.596;QD=18.57;ReadPosRankSum=1.596;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:8,103:113:99:2131,237,0 chrIV 218572 . A T 2186 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.02;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2219,237,0 chrIV 218669 . T C 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.400;QD=21.76;ReadPosRankSum=1.708;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3144,351,0 chrIV 218815 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.26;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2287,252,0 chrIV 218923 . T C 2142 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.2391;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.12;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2175,258,0 chrIV 219142 . A G 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.629;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.885;QD=23.49;ReadPosRankSum=1.617;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2171,243,0 chrIV 219175 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1642,183,0 chrIV 219340 . C A 2687 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2720,294,0 chrIV 220373 . G A 1600 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=5.7750;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=38;QD=6.32;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,252:253:99:1633,174,0 chrIV 220385 . A G 1424 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=268;Dels=0.00;FS=3.027;HaplotypeScore=7.9740;MLEAC=2;MLEAF=1.00;MQ=22.07;MQ0=38;MQRankSum=-2.214;QD=5.31;ReadPosRankSum=2.407;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,265:268:99:1457,168,0 chrIV 220463 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=21.78;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4355,474,0 chrIV 220878 . C A 2159 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.17;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2192,249,0 chrIV 221090 . C A 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.4295;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.363;QD=20.04;ReadPosRankSum=2.186;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2278,255,0 chrIV 221091 . T C 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=115;Dels=0.01;FS=2.999;HaplotypeScore=5.9522;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.384;QD=19.00;ReadPosRankSum=2.384;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2218,258,0 chrIV 221175 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.42;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2073,231,0 chrIV 221471 . A G 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.229;QD=20.61;ReadPosRankSum=1.676;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1311,150,0 chrIV 221893 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.03;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2981,333,0 chrIV 222017 . T G 2209 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.87;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2242,249,0 chrIV 222020 . C G 2269 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.03;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2302,255,0 chrIV 222073 . A G 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=82;Dels=0.00;FS=2.660;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.107;QD=18.15;ReadPosRankSum=2.359;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1521,171,0 chrIV 222257 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.51;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1991,213,0 chrIV 223134 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.2437;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.44;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3456,390,0 chrIV 223242 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.62;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3371,384,0 chrIV 223377 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=14.2604;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.44;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3142,357,0 chrIV 223943 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.91;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2591,282,0 chrIV 224109 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.13;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2463,270,0 chrIV 224112 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.26;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2646,285,0 chrIV 224325 . T G 4489.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.4421;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.88;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4489,513,0 chrIV 224747 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.48;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2451,267,0 chrIV 224809 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2634,285,0 chrIV 224854 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.87;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2960,321,0 chrIV 225140 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=162;Dels=0.00;FS=3.031;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.646;QD=23.46;ReadPosRankSum=2.374;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3800,432,0 chrIV 225248 . C T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.18;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4105,447,0 chrIV 226059 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.208;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.496;QD=23.26;ReadPosRankSum=1.644;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3652,414,0 chrIV 226121 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.27;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4166,465,0 chrIV 226209 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.98;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4172,450,0 chrIV 226850 . T C 33.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.086;DP=85;Dels=0.00;FS=4.537;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;MQRankSum=0.955;QD=0.40;ReadPosRankSum=-7.351;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:34,51:85:9:66,9,0 chrIV 226851 . G A 33.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.084;DP=87;Dels=0.00;FS=3.126;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;MQRankSum=0.678;QD=0.39;ReadPosRankSum=-7.799;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:33,54:87:9:66,9,0 chrIV 227127 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=20.52;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3652,411,0 chrIV 227141 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.27;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3508,375,0 chrIV 227151 . G C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.57;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3473,399,0 chrIV 227288 . A G 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=101;Dels=0.00;FS=3.033;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-1.579;QD=19.13;ReadPosRankSum=2.400;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:2,97:101:99:1965,228,0 chrIV 227306 . T C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-1.347;QD=20.06;ReadPosRankSum=1.700;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2199,249,0 chrIV 227641 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=23.98;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4316,477,0 chrIV 228076 . C T 5577.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=23.43;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5577,621,0 chrIV 228430 . A G 4884.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.0381;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=23.37;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4884,540,0 chrIV 228508 . G C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7165;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.32;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:3837,450,0 chrIV 228806 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.38;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3389,387,0 chrIV 229191 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.63;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2749,300,0 chrIV 229444 . A G 2450 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=21.30;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2483,282,0 chrIV 229448 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=20.95;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2421,267,0 chrIV 229466 . C A 2068 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=19.88;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2101,234,0 chrIV 229467 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=19.94;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2187,243,0 chrIV 229690 . A C 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.487;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;MQRankSum=-0.762;QD=19.06;ReadPosRankSum=1.704;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2415,273,0 chrIV 229702 . T C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=2.940;HaplotypeScore=99.7913;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;MQRankSum=-1.845;QD=18.83;ReadPosRankSum=2.363;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2199,249,0 chrIV 229811 . T C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;MQRankSum=1.541;QD=15.53;ReadPosRankSum=1.711;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2565,285,0 chrIV 229821 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=14.46;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2463,270,0 chrIV 229828 . G C 2085 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=12.49;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2118,243,0 chrIV 229843 . A C 2108 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=12.26;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2141,249,0 chrIV 229849 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=12.18;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2055,234,0 chrIV 229865 . T G 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=0;MQRankSum=-1.579;QD=12.98;ReadPosRankSum=1.710;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2084,237,0 chrIV 229868 . T A 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;MQRankSum=-1.553;QD=13.42;ReadPosRankSum=1.710;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2113,234,0 chrIV 229914 . C T 1040.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.883;DP=151;Dels=0.00;FS=5.137;HaplotypeScore=11.6661;MLEAC=1;MLEAF=0.500;MQ=49.26;MQ0=0;MQRankSum=-0.847;QD=6.89;ReadPosRankSum=1.011;SB=-4.640e+02 GT:AD:DP:GQ:PL 0/1:73,78:151:99:1070,0,1131 chrIV 230153 . A C 4671.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.46;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4671,528,0 chrIV 230663 . T C 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.437;QD=22.37;ReadPosRankSum=1.662;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2248,255,0 chrIV 230677 . T C 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.476;QD=20.87;ReadPosRankSum=1.668;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2287,261,0 chrIV 230893 . C T 4325.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.38;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4325,477,0 chrIV 231012 . A G 4683.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.9211;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.51;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4683,546,0 chrIV 231260 . G A 4712.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.32;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4712,531,0 chrIV 231400 . A T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.4719;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.90;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4144,453,0 chrIV 231827 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.36;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2346,264,0 chrIV 232181 . C T 1084 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1117,117,0 chrIV 232216 . G C 1415 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1448,168,0 chrIV 232245 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1279,138,0 chrIV 232777 . C T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.8381;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.09;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4133,453,0 chrIV 233071 . A C 5363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.086;QD=22.16;ReadPosRankSum=1.718;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5363,606,0 chrIV 233134 . A G 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=225;Dels=0.00;FS=6.319;HaplotypeScore=22.1169;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.128;QD=20.46;ReadPosRankSum=2.428;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:4604,534,0 chrIV 233173 . G A 4861.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.76;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4861,546,0 chrIV 233198 . C T 5340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=260;Dels=0.00;FS=5.765;HaplotypeScore=13.9786;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.627;QD=20.54;ReadPosRankSum=2.926;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:3,256:260:99:5340,591,0 chrIV 233237 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.250;DP=246;Dels=0.00;FS=5.966;HaplotypeScore=28.9566;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.284;QD=19.40;ReadPosRankSum=3.206;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:7,238:246:99:4772,546,0 chrIV 233528 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.73;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3359,375,0 chrIV 233915 . A C 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=53.8602;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.671;QD=21.10;ReadPosRankSum=1.676;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1341,150,0 chrIV 233966 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.0248;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.75;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1664,189,0 chrIV 234088 . A C 1482 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.00;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1515,171,0 chrIV 234097 . A T 1409 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.06;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1442,159,0 chrIV 234114 . T C 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.156;QD=17.02;ReadPosRankSum=2.308;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1514,168,0 chrIV 234211 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.17;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3204,345,0 chrIV 234361 . T C 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=118;Dels=0.00;FS=8.557;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.158;QD=22.25;ReadPosRankSum=2.408;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2658,303,0 chrIV 234547 . C G 2967 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.3709;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.93;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3000,339,0 chrIV 234711 . C G 2000 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.42;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2033,234,0 chrIV 234831 . C A 2509 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.20;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2542,273,0 chrIV 234944 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.5628;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.94;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3304,366,0 chrIV 235604 . T C 3161 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.80;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3194,363,0 chrIV 235676 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5546;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.215;QD=21.14;ReadPosRankSum=1.706;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:2929,327,0 chrIV 235902 . C G 1580 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.00;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1613,183,0 chrIV 235981 . A T 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;DP=60;Dels=0.00;FS=5.740;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.328;QD=17.42;ReadPosRankSum=1.270;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1078,126,0 chrIV 236039 . T C 1052 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=15.70;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1085,126,0 chrIV 236074 . A G 832 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=12.80;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:96:865,96,0 chrIV 236080 . T C 795 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;MQRankSum=-1.572;QD=12.23;ReadPosRankSum=1.679;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:96:828,96,0 chrIV 236082 . A T 848 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.735;QD=12.85;ReadPosRankSum=1.680;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:96:881,96,0 chrIV 236400 . C T 5158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;DP=237;Dels=0.00;FS=3.686;HaplotypeScore=20.0988;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.382;QD=21.76;ReadPosRankSum=-1.703;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:5158,548,0 chrIV 236610 . A G 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=177;Dels=0.00;FS=3.011;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.451;QD=21.29;ReadPosRankSum=2.394;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3769,435,0 chrIV 236619 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=3.354;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.226;QD=20.73;ReadPosRankSum=1.619;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3814,435,0 chrIV 236627 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.44;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3881,420,0 chrIV 237219 . G A 5873.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.08;SB=-3.272e+03 GT:AD:DP:GQ:PL 1/1:0,263:266:99:5873,666,0 chrIV 237312 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.2421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:4956,561,0 chrIV 237441 . T G 6556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=305;Dels=0.00;FS=6.237;HaplotypeScore=22.0489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.318;QD=21.50;ReadPosRankSum=2.401;SB=-3.739e+03 GT:AD:DP:GQ:PL 1/1:2,303:305:99:6556,744,0 chrIV 237726 . G A 4538.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.69;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4538,504,0 chrIV 237831 . T C 3192 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.6474;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.89;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3225,363,0 chrIV 237852 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.7799;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.78;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3402,378,0 chrIV 237897 . G A 3938.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.06;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3938,429,0 chrIV 237911 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.24;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3967,447,0 chrIV 237971 . G A 4778.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.43;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4778,522,0 chrIV 238389 . G A 5421.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.31;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5421,615,0 chrIV 238635 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=16.2741;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.39;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3850,417,0 chrIV 238826 . G T 3095 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.49;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3128,345,0 chrIV 239002 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.5309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.665;QD=21.40;ReadPosRankSum=1.687;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3339,378,0 chrIV 239328 . A C 5153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.247;QD=21.47;ReadPosRankSum=1.718;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5153,606,0 chrIV 239462 . C T 5631.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.5134;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.61;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,243:249:99:5631,618,0 chrIV 239484 . A G 4708.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.21;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4708,543,0 chrIV 239643 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=4.248;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.621;QD=23.01;ReadPosRankSum=1.704;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2932,327,0 chrIV 239693 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=173;Dels=0.00;FS=3.516;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=1.191;QD=22.01;ReadPosRankSum=1.712;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3807,432,0 chrIV 239755 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=21.65;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3702,414,0 chrIV 239884 . G C 4337.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=23.96;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4337,492,0 chrIV 239899 . A G 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=6.737;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.797;QD=22.28;ReadPosRankSum=2.421;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3810,429,0 chrIV 239907 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=22.81;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3695,402,0 chrIV 239977 . C A 2332 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=18.81;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2365,255,0 chrIV 239979 . C T 2194 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=17.69;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2227,255,0 chrIV 239980 . C A 2285 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=18.58;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2318,258,0 chrIV 239984 . C T 2468 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=18.15;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2501,276,0 chrIV 239996 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=127.2443;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=17.22;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2599,288,0 chrIV 240090 . T C 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=162;Dels=0.00;FS=4.434;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.506;QD=19.41;ReadPosRankSum=1.646;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3178,360,0 chrIV 240165 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=10.97;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1207,138,0 chrIV 240185 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9922;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=15.11;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2012,219,0 chrIV 240232 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0662;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=21.89;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3699,414,0 chrIV 240258 . G A 4092.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=23.52;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4092,444,0 chrIV 240326 . G T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=22.80;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3374,372,0 chrIV 240336 . T C 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;MQRankSum=-1.443;QD=22.08;ReadPosRankSum=1.708;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3213,369,0 chrIV 240375 . G C 3486.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=20.87;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3486,402,0 chrIV 240480 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.792;QD=21.56;ReadPosRankSum=1.714;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4074,462,0 chrIV 240506 . C A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.51;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3795,411,0 chrIV 240532 . C A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=18.72;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3350,369,0 chrIV 240544 . A G 2686 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=16.38;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2719,309,0 chrIV 240564 . T G 2627 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=16.02;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2660,306,0 chrIV 240610 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=16.76;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2614,285,0 chrIV 240612 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-0.526;QD=15.85;ReadPosRankSum=1.688;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2537,291,0 chrIV 240647 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=3.646;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.543;QD=17.30;ReadPosRankSum=1.691;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2956,327,0 chrIV 240657 . A C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-1.356;QD=16.95;ReadPosRankSum=1.712;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3034,345,0 chrIV 240792 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.6764;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.41;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2688,300,0 chrIV 240868 . G C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.39;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3422,396,0 chrIV 241065 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.22;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2813,318,0 chrIV 241166 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.52;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2832,306,0 chrIV 241206 . T C 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.395;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.206;QD=20.45;ReadPosRankSum=1.703;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2446,282,0 chrIV 241406 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.82;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3326,360,0 chrIV 241613 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.16;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4215,474,0 chrIV 241671 . A G 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=190;Dels=0.00;FS=3.603;HaplotypeScore=20.3303;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.179;QD=22.02;ReadPosRankSum=1.695;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4184,471,0 chrIV 241816 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.86;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3211,348,0 chrIV 241861 . T A 3204 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.10;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3237,351,0 chrIV 241900 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=5.016;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.024;QD=20.41;ReadPosRankSum=1.685;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3034,342,0 chrIV 241945 . A G 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.004;DP=135;Dels=0.00;FS=2.066;HaplotypeScore=3.7691;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=0.980;QD=13.71;ReadPosRankSum=2.277;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:4,131:135:99:1884,219,0 chrIV 241949 . G A 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=4.2777;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;MQRankSum=-0.586;QD=13.13;ReadPosRankSum=1.681;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:1832,201,0 chrIV 241962 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=11.53;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1532,168,0 chrIV 241990 . C T 1219 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=9.23;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1252,141,0 chrIV 242001 . G C 1065 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=90.4607;MLEAC=2;MLEAF=1.00;MQ=35.71;MQ0=0;QD=8.39;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1098,126,0 chrIV 242036 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=10.99;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1341,147,0 chrIV 242056 . C A 1380 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=13.66;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1413,159,0 chrIV 242094 . A T 1598 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.03;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1631,180,0 chrIV 242306 . A G 1056 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.12;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1089,123,0 chrIV 242772 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.72;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2761,312,0 chrIV 242997 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.65;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3945,432,0 chrIV 243004 . G A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.32;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3779,411,0 chrIV 243234 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.733;QD=22.79;ReadPosRankSum=1.688;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3624,411,0 chrIV 243379 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.98;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3765,417,0 chrIV 243421 . C T 4276.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.60;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4276,462,0 chrIV 243568 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.22;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3971,426,0 chrIV 243616 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.54;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3449,375,0 chrIV 243985 . A G 3174 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.04;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3207,372,0 chrIV 244033 . G A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.2488;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.21;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3669,411,0 chrIV 244138 . T G 3952.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.66;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3952,441,0 chrIV 244150 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=201;Dels=0.00;FS=2.578;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.603;QD=18.82;ReadPosRankSum=2.955;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:3782,438,0 chrIV 244177 . G T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.56;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3842,432,0 chrIV 244921 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=15.0440;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.99;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2489,273,0 chrIV 245353 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.02;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3300,369,0 chrIV 245366 . T C 3017 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.97;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3050,348,0 chrIV 245765 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=163;Dels=0.00;FS=3.021;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.311;QD=22.07;ReadPosRankSum=2.313;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3597,411,0 chrIV 246213 . T C 3962.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.61;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3962,453,0 chrIV 246316 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=201;Dels=0.00;FS=4.333;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.330;QD=20.57;ReadPosRankSum=1.662;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4135,468,0 chrIV 246646 . T C 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=138;Dels=0.00;FS=3.074;HaplotypeScore=4.8106;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.552;QD=20.41;ReadPosRankSum=1.707;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2849,324,0 chrIV 246664 . T G 2591 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.90;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2624,300,0 chrIV 246743 . G C 3352.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3352,378,0 chrIV 247067 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3344,366,0 chrIV 247208 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.44;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4055,462,0 chrIV 247620 . G T 4696.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.21;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4696,507,0 chrIV 247752 . G C 3147 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.12;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3180,366,0 chrIV 247813 . A G 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.219;QD=19.45;ReadPosRankSum=1.710;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3126,366,0 chrIV 247820 . C A 3139 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.1660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.74;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3172,354,0 chrIV 247985 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.48;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2326,258,0 chrIV 248008 . T A 2273 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=21.44;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2306,252,0 chrIV 248017 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.33;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2140,240,0 chrIV 248088 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.53;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2083,234,0 chrIV 248358 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.55;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1843,210,0 chrIV 248438 . T C 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.134;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.667;QD=22.20;ReadPosRankSum=1.700;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2431,276,0 chrIV 248513 . G C 2285 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.18;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2318,267,0 chrIV 248537 . A C 2415 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.95;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2448,273,0 chrIV 249264 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.08;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3411,375,0 chrIV 249432 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.78;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2268,252,0 chrIV 249508 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.532;QD=21.51;ReadPosRankSum=1.560;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2636,297,0 chrIV 249531 . T C 2434 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.12;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2467,291,0 chrIV 249579 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.06;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2665,291,0 chrIV 249627 . A G 3712.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.58;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3712,423,0 chrIV 249679 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.194;QD=22.36;ReadPosRankSum=1.625;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3600,405,0 chrIV 249699 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.49;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3644,405,0 chrIV 249729 . A G 2998 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.82;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3031,345,0 chrIV 250434 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3103,345,0 chrIV 250548 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.98;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3378,387,0 chrIV 250761 . C A 5234.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.06;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5234,582,0 chrIV 251017 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.42;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3860,417,0 chrIV 251141 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2119,231,0 chrIV 251417 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9478;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3865,438,0 chrIV 251534 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3881,420,0 chrIV 251630 . T A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.2922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4236,477,0 chrIV 251673 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=173;Dels=0.00;FS=3.028;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.490;QD=23.47;ReadPosRankSum=2.364;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4060,459,0 chrIV 251856 . T C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=4.307;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.447;QD=22.99;ReadPosRankSum=1.676;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2884,321,0 chrIV 251943 . C G 2966 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.6562;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.13;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2999,339,0 chrIV 252063 . T C 2826 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.15;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2859,330,0 chrIV 252202 . T A 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8141;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.584;QD=23.95;ReadPosRankSum=1.669;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3975,435,0 chrIV 252312 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.58;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3545,384,0 chrIV 252376 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=170;Dels=0.00;FS=2.594;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.502;QD=23.59;ReadPosRankSum=2.421;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4011,456,0 chrIV 252732 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.1047;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.08;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4116,468,0 chrIV 252749 . G T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.73;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4390,474,0 chrIV 253388 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2151,231,0 chrIV 253696 . T C 2398 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2431,276,0 chrIV 253743 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.76;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2318,249,0 chrIV 253830 . A G 1503 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.04;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1536,174,0 chrIV 253832 . T A 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.276;QD=18.97;ReadPosRankSum=1.687;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1475,168,0 chrIV 253902 . T G 1774 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.87;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1807,204,0 chrIV 254151 . A G 2559 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2592,309,0 chrIV 254747 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3116,351,0 chrIV 254813 . T G 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=106;Dels=0.00;FS=3.095;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.432;QD=19.32;ReadPosRankSum=1.666;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2081,243,0 chrIV 254856 . A G 2513 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.04;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2546,285,0 chrIV 255187 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.18;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4618,498,0 chrIV 255235 . A G 4658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=209;Dels=0.00;FS=3.014;HaplotypeScore=9.4199;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.828;QD=22.29;ReadPosRankSum=2.414;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4658,528,0 chrIV 255481 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.44;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2735,294,0 chrIV 255722 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.66;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1823,195,0 chrIV 255870 . C T 2484 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.0639;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.21;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2517,279,0 chrIV 255882 . T C 2165 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.32;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2198,252,0 chrIV 256179 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.012;QD=21.70;ReadPosRankSum=1.709;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3265,366,0 chrIV 256213 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=146;Dels=0.00;FS=12.166;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.372;QD=22.52;ReadPosRankSum=2.952;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3288,363,0 chrIV 256518 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.33;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2066,225,0 chrIV 256530 . A G 1662 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.55;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1695,195,0 chrIV 256568 . C T 961 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=14.0096;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=16.86;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:994,108,0 chrIV 256744 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.82;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1321,147,0 chrIV 257078 . T G 1892 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1925,222,0 chrIV 257200 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.522;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.654;QD=21.68;ReadPosRankSum=1.655;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1984,228,0 chrIV 257223 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.99;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2079,228,0 chrIV 257386 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.07;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3297,363,0 chrIV 257501 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.012;QD=23.30;ReadPosRankSum=1.683;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3309,375,0 chrIV 257569 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.33;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3572,399,0 chrIV 257584 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.76;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3503,396,0 chrIV 257586 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.78;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3736,393,0 chrIV 257701 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.565;DP=184;Dels=0.00;FS=12.176;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.663;QD=18.37;ReadPosRankSum=3.805;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:5,178:184:99:3380,393,0 chrIV 257704 . G T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.05;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3563,402,0 chrIV 258190 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.50;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2698,303,0 chrIV 258238 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1252;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.87;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2618,291,0 chrIV 258250 . G C 2395 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.14;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2428,279,0 chrIV 258265 . A C 2428 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.85;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2461,273,0 chrIV 258677 . A T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.5282;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.82;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3905,417,0 chrIV 258755 . G A 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.722;QD=22.96;ReadPosRankSum=0.054;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4431,486,0 chrIV 258793 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.55;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3863,429,0 chrIV 258800 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.72;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3751,423,0 chrIV 259049 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.77;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3279,363,0 chrIV 259115 . A T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.64;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3623,396,0 chrIV 259152 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=21.41;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2987,327,0 chrIV 259153 . C A 2889 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=21.09;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2922,318,0 chrIV 259167 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=20.39;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2826,306,0 chrIV 259198 . G C 2496 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.63;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2529,285,0 chrIV 259676 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3559,399,0 chrIV 259808 . A C 2903 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.35;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2936,339,0 chrIV 259889 . G T 3010 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.5612;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.46;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3043,336,0 chrIV 259996 . A T 2534 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.44;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2567,285,0 chrIV 260003 . A G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=4.271;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.155;QD=18.89;ReadPosRankSum=1.704;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2356,270,0 chrIV 260036 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.02;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2556,282,0 chrIV 260057 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.64;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2716,294,0 chrIV 260180 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.94;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3017,348,0 chrIV 260778 . T C 2528 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2561,285,0 chrIV 260870 . A C 2275 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.67;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2308,264,0 chrIV 261099 . A T 2681 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.31;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2714,300,0 chrIV 261140 . G C 3090 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.07;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3123,351,0 chrIV 261152 . C T 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=144;Dels=0.00;FS=3.949;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.179;QD=19.77;ReadPosRankSum=1.564;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2880,312,0 chrIV 261167 . T C 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.024;QD=18.22;ReadPosRankSum=1.708;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2712,309,0 chrIV 261367 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=145;Dels=0.00;FS=2.115;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.035;QD=22.56;ReadPosRankSum=2.641;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:3271,369,0 chrIV 261458 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3588;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.61;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3085,333,0 chrIV 261620 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3264,372,0 chrIV 261828 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=150;Dels=0.00;FS=7.302;HaplotypeScore=8.1979;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.926;QD=22.49;ReadPosRankSum=2.073;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3373,378,0 chrIV 261944 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2653,285,0 chrIV 262158 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.6254;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.78;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2676,303,0 chrIV 262254 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.6493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2945,315,0 chrIV 262380 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.52;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3505,375,0 chrIV 262409 . C G 3152 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.74;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3185,369,0 chrIV 262808 . C T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.47;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4435,474,0 chrIV 263012 . G A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.77;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3779,414,0 chrIV 263030 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.73;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3412,384,0 chrIV 263811 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4055,453,0 chrIV 264106 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.50;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3290,357,0 chrIV 264197 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1585,180,0 chrIV 264290 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1323,147,0 chrIV 265338 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.10;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4844,534,0 chrIV 265426 . C T 6714.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=7.1679;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.09;SB=-3.830e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:6714,727,0 chrIV 265445 . G A 5690.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=6.1725;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.01;SB=-3.441e+03 GT:AD:DP:GQ:PL 1/1:0,313:316:99:5690,651,0 chrIV 265452 . T G 5610.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=7.2548;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.39;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:5610,636,0 chrIV 265606 . G T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.9736;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.22;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4388,474,0 chrIV 265742 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.411;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=1.172;QD=18.88;ReadPosRankSum=1.681;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2620,291,0 chrIV 265749 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=17.83;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2618,297,0 chrIV 265807 . A G 2648 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.1198;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.54;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2681,309,0 chrIV 265841 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.7299;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.55;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3034,330,0 chrIV 265908 . C A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.87;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:4025,456,0 chrIV 265938 . G A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.97;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4483,483,0 chrIV 265986 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.72;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4178,444,0 chrIV 266029 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.51;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3974,432,0 chrIV 266113 . A G 5448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=236;Dels=0.00;FS=3.180;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.715;QD=23.08;ReadPosRankSum=1.703;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5448,606,0 chrIV 266302 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=191;Dels=0.00;FS=14.881;HaplotypeScore=15.8587;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.782;QD=20.96;ReadPosRankSum=2.878;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4004,471,0 chrIV 266398 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=163;Dels=0.00;FS=3.146;HaplotypeScore=12.2809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.158;QD=22.96;ReadPosRankSum=1.711;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3743,423,0 chrIV 266488 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.487;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.810;QD=21.63;ReadPosRankSum=1.642;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3353,381,0 chrIV 266878 . C A 3187 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3220,357,0 chrIV 267359 . A T 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.112;QD=24.43;ReadPosRankSum=1.655;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3274,360,0 chrIV 267406 . A G 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.108;QD=21.58;ReadPosRankSum=1.638;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2428,276,0 chrIV 267874 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9600;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.34;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3100,333,0 chrIV 268279 . A G 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=4.102;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.630;QD=22.57;ReadPosRankSum=1.680;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:4514,522,0 chrIV 268432 . C T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.67;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4443,504,0 chrIV 268603 . A G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.596;QD=22.20;ReadPosRankSum=1.678;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2874,333,0 chrIV 269350 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.11;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2974,333,0 chrIV 269406 . G A 2830 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.98;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2863,309,0 chrIV 269544 . T A 2089 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.46;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2122,231,0 chrIV 269772 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.46;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2436,273,0 chrIV 269895 . T C 2824 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.41;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2857,324,0 chrIV 270080 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=135;Dels=0.00;FS=3.424;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.207;QD=21.05;ReadPosRankSum=1.653;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,131:135:99:2875,327,0 chrIV 270117 . A G 3054 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.14;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3087,351,0 chrIV 270285 . G A 5423.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5423,586,0 chrIV 271431 . A T 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.406;QD=23.55;ReadPosRankSum=1.689;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3838,417,0 chrIV 271505 . T G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=168;Dels=0.00;FS=6.583;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.592;QD=20.99;ReadPosRankSum=2.420;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3527,408,0 chrIV 271629 . C G 5366.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=19.5133;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.64;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,233:237:99:5366,600,0 chrIV 271671 . T C 4889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.532;DP=212;Dels=0.00;FS=4.881;HaplotypeScore=11.3188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.042;QD=23.06;ReadPosRankSum=3.747;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:5,206:212:99:4889,555,0 chrIV 272060 . G A 5347.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.2908;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.28;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5347,574,0 chrIV 272298 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.88;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4465,478,0 chrIV 272385 . A C 4109.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.35;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4109,477,0 chrIV 273003 . T C 2511 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.83;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2544,285,0 chrIV 273139 . C A 1703 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1736,192,0 chrIV 273171 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.92;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1523,165,0 chrIV 273273 . G A 1249 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1282,138,0 chrIV 273764 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.92;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1263,144,0 chrIV 273899 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.50;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2800,315,0 chrIV 274301 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=188;Dels=0.00;FS=5.160;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.102;QD=22.70;ReadPosRankSum=1.714;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4267,489,0 chrIV 274589 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.07;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4035,456,0 chrIV 274595 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.87;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4132,459,0 chrIV 274809 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.873;QD=21.94;ReadPosRankSum=1.704;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2819,318,0 chrIV 274854 . C A 1782 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.48;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1815,204,0 chrIV 275012 . C T 988 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.64;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1021,114,0 chrIV 275118 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.39;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1118,129,0 chrIV 275205 . A G 1785 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.12;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1818,204,0 chrIV 275637 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=173;Dels=0.00;FS=2.993;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.413;QD=21.91;ReadPosRankSum=2.379;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3791,435,0 chrIV 275721 . T C 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=202;Dels=0.00;FS=5.639;HaplotypeScore=6.6954;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.587;QD=18.95;ReadPosRankSum=2.955;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:3827,447,0 chrIV 275730 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.21;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3977,438,0 chrIV 275865 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.872;QD=21.13;ReadPosRankSum=1.644;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3338,381,0 chrIV 275877 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.26;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3720,405,0 chrIV 275949 . G A 4797.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=24.11;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4797,508,0 chrIV 276066 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.61;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3186,375,0 chrIV 276194 . A G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=5.360;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.086;QD=18.10;ReadPosRankSum=1.680;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2495,285,0 chrIV 276204 . G A 2331 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=17.40;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2364,267,0 chrIV 276549 . G T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1641;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.24;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3741,417,0 chrIV 276600 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.87;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3204,369,0 chrIV 276615 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.40;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2965,321,0 chrIV 276677 . C A 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.6301;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.190;QD=19.38;ReadPosRankSum=-0.427;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2882,312,0 chrIV 277276 . C T 5325.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.88;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5325,588,0 chrIV 278692 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.08;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3393,381,0 chrIV 280191 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=22.37;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1644,186,0 chrIV 280598 . A C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4275;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.199;QD=22.61;ReadPosRankSum=1.648;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3730,420,0 chrIV 280697 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.18;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2722,300,0 chrIV 280802 . A T 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.590;QD=20.34;ReadPosRankSum=1.694;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1884,213,0 chrIV 280847 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.45;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2050,225,0 chrIV 280934 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.04;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2222,255,0 chrIV 281102 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.28;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2544,294,0 chrIV 281207 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.69;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2102,237,0 chrIV 281213 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.82;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2280,246,0 chrIV 281306 . C A 2912 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.06;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2945,336,0 chrIV 281327 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.511;QD=22.07;ReadPosRankSum=1.707;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3145,357,0 chrIV 281351 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.88;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2797,318,0 chrIV 281392 . T C 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=154;Dels=0.00;FS=5.526;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.125;QD=20.58;ReadPosRankSum=2.954;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3203,369,0 chrIV 281474 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.0376;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.94;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3467,399,0 chrIV 281569 . A G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=175;Dels=0.00;FS=6.729;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.774;QD=22.95;ReadPosRankSum=2.421;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:4016,453,0 chrIV 281647 . A G 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.277;QD=22.62;ReadPosRankSum=1.651;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4841,543,0 chrIV 281853 . A G 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.221;QD=20.09;ReadPosRankSum=2.414;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2826,327,0 chrIV 281966 . T A 2663 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.37;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2696,306,0 chrIV 281967 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=18.74;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2732,297,0 chrIV 282023 . A G 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.303;DP=117;Dels=0.00;FS=2.748;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=1.503;QD=13.52;ReadPosRankSum=1.777;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1615,183,0 chrIV 282024 . T A 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.070;DP=116;Dels=0.00;FS=5.315;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=1.513;QD=13.47;ReadPosRankSum=2.592;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:1595,177,0 chrIV 283030 . T C 5205.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=21.6565;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.82;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5205,594,0 chrIV 283137 . T A 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=165;Dels=0.00;FS=11.554;HaplotypeScore=12.6168;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.767;QD=20.78;ReadPosRankSum=2.345;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3429,375,0 chrIV 283730 . A G 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=142;Dels=0.00;FS=6.082;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.479;QD=22.14;ReadPosRankSum=2.893;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:3177,363,0 chrIV 283794 . A C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=3.146;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.074;QD=22.19;ReadPosRankSum=1.711;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3639,420,0 chrIV 283814 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=146;Dels=0.00;FS=10.273;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.755;QD=21.77;ReadPosRankSum=2.923;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:3,141:146:99:3212,369,0 chrIV 283896 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=3.397;HaplotypeScore=10.4539;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.685;QD=22.52;ReadPosRankSum=1.705;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2960,336,0 chrIV 284001 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.439;QD=22.39;ReadPosRankSum=1.652;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2944,330,0 chrIV 284171 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.48;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2978,333,0 chrIV 284380 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.23;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2234,243,0 chrIV 284557 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1998,222,0 chrIV 285457 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.13;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2949,330,0 chrIV 285472 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.09;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3380,363,0 chrIV 285505 . A G 3423.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.52;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3423,387,0 chrIV 285631 . T C 5848.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.97;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5848,657,0 chrIV 285994 . A C 5376.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=28.4678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5376,630,0 chrIV 286258 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=179;Dels=0.00;FS=2.839;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.608;QD=21.34;ReadPosRankSum=2.394;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3819,432,0 chrIV 287699 . T A 5234.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.9783;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.26;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5234,576,0 chrIV 288063 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3794,432,0 chrIV 288140 . G T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=18.2282;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.35;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4023,438,0 chrIV 288588 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.35;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2961,327,0 chrIV 288760 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.26;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3638,399,0 chrIV 288918 . C T 4804.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.55;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4804,517,0 chrIV 288945 . G A 4753.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.00;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4753,510,0 chrIV 289233 . T C 4992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=220;Dels=0.00;FS=10.882;HaplotypeScore=14.5452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.018;QD=22.69;ReadPosRankSum=2.950;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:4992,582,0 chrIV 289365 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.17;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3081,336,0 chrIV 289475 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=119;Dels=0.00;FS=2.594;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.788;QD=22.56;ReadPosRankSum=2.941;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2718,309,0 chrIV 290079 . C T 5053.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5053,564,0 chrIV 290322 . T C 4876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=3.442;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.561;QD=20.07;ReadPosRankSum=1.718;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:4876,561,0 chrIV 291246 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.74;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2967,324,0 chrIV 291309 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.28;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2684,294,0 chrIV 291351 . G A 2690 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.05;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2723,288,0 chrIV 291369 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.79;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2289,255,0 chrIV 291387 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=18.97;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2291,246,0 chrIV 291408 . A G 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8782;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-0.653;QD=16.90;ReadPosRankSum=1.704;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2095,240,0 chrIV 291582 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=24.60;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3468,378,0 chrIV 291726 . T A 2978 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=18.27;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3011,330,0 chrIV 291738 . T C 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.119;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;MQRankSum=-0.585;QD=16.59;ReadPosRankSum=1.708;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2389,288,0 chrIV 291748 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=18.85;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2540,279,0 chrIV 291765 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=17.66;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2187,249,0 chrIV 291783 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=17.88;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1964,213,0 chrIV 291846 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.60;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2712,291,0 chrIV 292005 . G A 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;DP=120;Dels=0.00;FS=4.771;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.346;QD=23.50;ReadPosRankSum=-0.058;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2853,303,0 chrIV 292017 . T G 2791 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.37;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2824,321,0 chrIV 292139 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=21.35;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2872,324,0 chrIV 292210 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=20.67;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2141,240,0 chrIV 292219 . A G 2052 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.52;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2085,240,0 chrIV 292277 . A G 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-0.706;QD=20.33;ReadPosRankSum=1.689;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1680,192,0 chrIV 292317 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=20.82;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1948,222,0 chrIV 292351 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=19.49;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1397,156,0 chrIV 292352 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=19.15;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1412,156,0 chrIV 292455 . A G 1594 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=74.2857;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.98;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1627,183,0 chrIV 292517 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=23.1926;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.83;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2195,240,0 chrIV 292751 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.07;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3538,399,0 chrIV 292776 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1983;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.58;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3567,402,0 chrIV 293191 . A T 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.578;DP=135;Dels=0.00;FS=3.900;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.604;QD=22.90;ReadPosRankSum=1.706;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3125,331,0 chrIV 293276 . G T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.86;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3629,399,0 chrIV 293950 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2546,276,0 chrIV 294391 . T A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3302,360,0 chrIV 294427 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.366;QD=20.48;ReadPosRankSum=2.401;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3166,357,0 chrIV 295520 . T A 3419.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.064;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.364;QD=21.10;ReadPosRankSum=1.689;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3419,384,0 chrIV 295525 . G A 3215.99 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.095;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.413;QD=20.75;ReadPosRankSum=1.576;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3249,354,0 chrIV 295526 . A G 3082 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-0.225;QD=19.63;ReadPosRankSum=1.710;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3115,354,0 chrIV 295601 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6351;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.779;QD=19.71;ReadPosRankSum=1.710;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3207,366,0 chrIV 295928 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.5361;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.544;QD=21.12;ReadPosRankSum=1.692;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3633,417,0 chrIV 296063 . G A 4826.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.8200;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.74;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4826,534,0 chrIV 296099 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.900;QD=22.64;ReadPosRankSum=1.674;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4052,456,0 chrIV 296244 . C T 4689.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.4201;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.22;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4689,513,0 chrIV 296284 . T C 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=211;Dels=0.00;FS=2.918;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.046;QD=23.97;ReadPosRankSum=2.426;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:5058,567,0 chrIV 296339 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4609,522,0 chrIV 296793 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.369;QD=23.52;ReadPosRankSum=1.687;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3646,408,0 chrIV 296817 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=3.030;HaplotypeScore=5.1677;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.263;QD=22.67;ReadPosRankSum=2.161;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3287,372,0 chrIV 296942 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2774,309,0 chrIV 297184 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1721,195,0 chrIV 297889 . A T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.12;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3425,378,0 chrIV 297926 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.35;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3362,366,0 chrIV 297971 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=3.027;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.609;QD=18.31;ReadPosRankSum=2.417;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2816,330,0 chrIV 297975 . C A 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.8446;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.787;QD=18.86;ReadPosRankSum=1.507;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2937,324,0 chrIV 298416 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.06;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2685,300,0 chrIV 298579 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.616;QD=23.09;ReadPosRankSum=1.686;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3463,387,0 chrIV 298654 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.051;QD=21.38;ReadPosRankSum=1.692;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3698,426,0 chrIV 298870 . G T 3081 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.85;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3114,339,0 chrIV 298871 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=21.21;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3045,339,0 chrIV 299200 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.40;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2968,336,0 chrIV 299385 . T A 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=138;Dels=0.00;FS=2.997;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.134;QD=22.80;ReadPosRankSum=2.414;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3180,339,0 chrIV 299792 . G A 5935.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.00;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5935,640,0 chrIV 299864 . T C 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.418;HaplotypeScore=13.6554;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.609;QD=19.01;ReadPosRankSum=1.660;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2808,327,0 chrIV 300160 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.68;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1942,222,0 chrIV 300204 . A T 2122 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=3.5397;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.29;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2155,234,0 chrIV 300487 . T C 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=222;Dels=0.00;FS=2.933;HaplotypeScore=14.7548;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.128;QD=21.23;ReadPosRankSum=2.416;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:4713,540,0 chrIV 300521 . C G 4937.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.56;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4937,558,0 chrIV 300921 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.26;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4185,471,0 chrIV 301033 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.28;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3817,435,0 chrIV 301246 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.44;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3120,342,0 chrIV 301375 . A T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3581,390,0 chrIV 301751 . T C 4980.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.9383;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.33;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:4980,561,0 chrIV 301888 . G A 5510.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=12.7319;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.69;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5510,603,0 chrIV 302084 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.12;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3760,405,0 chrIV 302250 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=20.96;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2422,279,0 chrIV 302333 . A T 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.300;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=17.5470;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.857;QD=0.62;ReadPosRankSum=0.060;SB=-6.076e+01 GT:AD:DP:GQ:PL 1/1:2,19:21:6:44,6,0 chrIV 303051 . C A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.7453;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.51;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3356,366,0 chrIV 303088 . T A 3199 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.38;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3232,354,0 chrIV 303098 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=164;Dels=0.00;FS=13.610;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-2.451;QD=18.73;ReadPosRankSum=2.846;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3105,348,0 chrIV 303104 . G C 3014 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0975;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=18.27;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3047,342,0 chrIV 303140 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.65;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2098,237,0 chrIV 303260 . T G 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=203;Dels=0.00;FS=3.446;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.252;QD=21.79;ReadPosRankSum=1.715;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,199:203:99:4424,510,0 chrIV 303504 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.84;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3117,339,0 chrIV 303806 . G A 4945.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.48;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4945,528,0 chrIV 304008 . A T 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.548;QD=21.34;ReadPosRankSum=0.467;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3234,357,0 chrIV 304248 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.85;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3291,372,0 chrIV 305142 . A G 3008 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.79;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3041,339,0 chrIV 305364 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=158;Dels=0.00;FS=8.905;HaplotypeScore=12.8258;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.879;QD=20.04;ReadPosRankSum=2.387;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3200,363,0 chrIV 305599 . G T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.06;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4788,522,0 chrIV 306893 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.16;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2515,288,0 chrIV 307571 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=19.42;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2111,228,0 chrIV 307572 . A C 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=4.125;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-0.621;QD=18.72;ReadPosRankSum=1.699;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2017,228,0 chrIV 307596 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=17.97;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2405,270,0 chrIV 307654 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.82;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2530,273,0 chrIV 307671 . A G 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.277;QD=19.76;ReadPosRankSum=1.473;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:3,110:115:99:2305,264,0 chrIV 307920 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.87;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3938,432,0 chrIV 307984 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.346;QD=19.93;ReadPosRankSum=1.706;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2744,318,0 chrIV 308058 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.28;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3409,381,0 chrIV 308241 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=19.51;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2101,237,0 chrIV 308248 . T C 1986 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=18.56;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2019,228,0 chrIV 308255 . T C 1882 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=17.59;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1915,216,0 chrIV 308257 . G A 1918 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=17.76;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1951,210,0 chrIV 308500 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=24.30;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3305,363,0 chrIV 308617 . G C 2458 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.97;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2491,282,0 chrIV 308638 . A T 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.314;QD=22.92;ReadPosRankSum=1.702;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2738,303,0 chrIV 308658 . T G 2449 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.11;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2482,288,0 chrIV 308690 . A C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.087;QD=18.95;ReadPosRankSum=1.674;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,119:124:99:2383,279,0 chrIV 308700 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.29;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2522,276,0 chrIV 308786 . A C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=120;Dels=0.00;FS=10.229;HaplotypeScore=13.9932;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.961;QD=22.30;ReadPosRankSum=2.408;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2709,303,0 chrIV 309560 . A G 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.733;QD=22.62;ReadPosRankSum=1.646;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:938,108,0 chrIV 309895 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1405,171,0 chrIV 310224 . A G 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.102;QD=22.91;ReadPosRankSum=1.630;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1591,180,0 chrIV 310329 . A T 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.039;DP=75;Dels=0.00;FS=5.963;HaplotypeScore=7.0432;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.501;QD=20.40;ReadPosRankSum=0.439;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1563,149,0 chrIV 310363 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=18.31;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1388,153,0 chrIV 310377 . T G 1192 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=16.79;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1225,141,0 chrIV 310384 . T C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=-0.655;QD=17.55;ReadPosRankSum=1.685;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1332,147,0 chrIV 310485 . G T 2329 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.02;FS=0.000;HaplotypeScore=22.6289;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.52;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2362,258,0 chrIV 310519 . A G 2208 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.03;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2241,255,0 chrIV 310698 . T C 2081 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=21.23;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2114,246,0 chrIV 310900 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.51;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3480,375,0 chrIV 310948 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4990;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.35;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3922,426,0 chrIV 311119 . A G 3475.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.28;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3475,399,0 chrIV 311194 . G T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.69;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3381,381,0 chrIV 311386 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.304;QD=22.69;ReadPosRankSum=1.713;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4062,468,0 chrIV 311442 . T G 3443.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.39;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3443,393,0 chrIV 311470 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.28;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3553,381,0 chrIV 311476 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=176;Dels=0.00;FS=2.989;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.565;QD=18.68;ReadPosRankSum=2.352;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3287,372,0 chrIV 311500 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=183;Dels=0.00;FS=3.008;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.439;QD=18.36;ReadPosRankSum=2.396;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3359,396,0 chrIV 311602 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3635,405,0 chrIV 311752 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.91;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3253,354,0 chrIV 311785 . T A 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.8591;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.090;QD=23.51;ReadPosRankSum=1.692;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4067,453,0 chrIV 311890 . T G 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.3301;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.075;QD=23.98;ReadPosRankSum=1.713;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4436,492,0 chrIV 312042 . C T 7438.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=17.5911;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.31;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:0,303:306:99:7438,814,0 chrIV 312184 . C T 6030.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.37;SB=-3.462e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:6030,678,0 chrIV 312186 . C T 6244.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.81;SB=-3.507e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6244,678,0 chrIV 312250 . T C 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=260;Dels=0.00;FS=9.141;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.184;QD=17.68;ReadPosRankSum=2.382;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,252:260:99:4598,516,0 chrIV 312391 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.99;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3981,432,0 chrIV 312431 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.58;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3140,357,0 chrIV 312569 . A T 3044 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.29;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3077,336,0 chrIV 312599 . G T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=14.9428;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.11;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3537,384,0 chrIV 312701 . T C 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=131;Dels=0.00;FS=2.573;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-2.543;QD=23.11;ReadPosRankSum=2.869;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:3060,345,0 chrIV 313108 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.08;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3492,375,0 chrIV 313223 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.19;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3594,408,0 chrIV 313308 . T A 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=2.888;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.775;QD=24.81;ReadPosRankSum=2.289;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3424,369,0 chrIV 313436 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.0030;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.11;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3537,411,0 chrIV 313461 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.61;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3062,348,0 chrIV 313566 . C T 4048.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.49;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4048,462,0 chrIV 313644 . T C 3004 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0641;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.76;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3037,348,0 chrIV 313728 . A G 3179 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.04;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3212,357,0 chrIV 313860 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.054;QD=22.25;ReadPosRankSum=1.708;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3259,363,0 chrIV 313905 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.80;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3660,426,0 chrIV 313974 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.04;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3406,381,0 chrIV 314015 . T C 2738 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.15;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2771,324,0 chrIV 314207 . A C 977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.163;QD=18.09;ReadPosRankSum=2.357;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:2,51:54:99:1010,117,0 chrIV 314232 . C A 1225 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.69;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1258,135,0 chrIV 314500 . C T 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.6847;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.584;QD=25.31;ReadPosRankSum=1.673;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:3020,330,0 chrIV 315134 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.47;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2264,264,0 chrIV 316669 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=18.9308;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.29;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2843,315,0 chrIV 316810 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4857;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=22.03;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1531,165,0 chrIV 316823 . T G 1270 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=21.53;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1303,147,0 chrIV 316848 . G C 1281 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.33;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1314,147,0 chrIV 316862 . T A 1186 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.81;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1219,135,0 chrIV 317220 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.28;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2818,318,0 chrIV 317280 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.45;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2508,273,0 chrIV 317288 . T A 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=7.245;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.088;QD=20.38;ReadPosRankSum=2.391;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2601,282,0 chrIV 317652 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=130;Dels=0.00;FS=2.892;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.663;QD=22.50;ReadPosRankSum=2.373;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2958,339,0 chrIV 317913 . G T 2169 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.91;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2202,243,0 chrIV 318023 . A G 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.579;QD=21.05;ReadPosRankSum=2.301;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1780,201,0 chrIV 318102 . A G 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=98;Dels=0.00;FS=3.433;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.554;QD=21.17;ReadPosRankSum=1.696;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2108,246,0 chrIV 318156 . A G 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=4.075;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.565;QD=23.10;ReadPosRankSum=1.694;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2181,249,0 chrIV 318226 . T C 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.2452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.295;QD=22.63;ReadPosRankSum=1.698;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2387,276,0 chrIV 318270 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2591,294,0 chrIV 318317 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3361,363,0 chrIV 318659 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.26;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2771,309,0 chrIV 319317 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.251;QD=22.56;ReadPosRankSum=1.689;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3587,417,0 chrIV 319482 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.44;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3452,390,0 chrIV 319641 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.25;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2659,291,0 chrIV 320177 . C G 2599 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.84;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2632,309,0 chrIV 320475 . A G 2889 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.57;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2922,330,0 chrIV 320548 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.160;QD=22.77;ReadPosRankSum=1.668;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2538,282,0 chrIV 320589 . T A 2644 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.22;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2677,285,0 chrIV 320785 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.90;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2990,342,0 chrIV 320808 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=160;Dels=0.00;FS=11.178;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.006;QD=21.46;ReadPosRankSum=2.829;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3433,384,0 chrIV 320881 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4546;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.15;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3455,396,0 chrIV 320953 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.541;QD=22.85;ReadPosRankSum=1.708;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3313,363,0 chrIV 320980 . A T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.4118;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.55;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3603,387,0 chrIV 321012 . A G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-1.106;QD=19.33;ReadPosRankSum=1.713;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3441,387,0 chrIV 321013 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.732;DP=177;Dels=0.00;FS=12.054;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.668;QD=19.76;ReadPosRankSum=3.732;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:5,172:177:99:3498,387,0 chrIV 321074 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.190;HaplotypeScore=10.0766;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.471;QD=19.78;ReadPosRankSum=1.712;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3462,405,0 chrIV 321145 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=3.608;HaplotypeScore=10.9403;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.965;QD=22.81;ReadPosRankSum=1.707;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3226,369,0 chrIV 321292 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.94;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2506,285,0 chrIV 321295 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.63;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2693,291,0 chrIV 321379 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=17.19;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1907,219,0 chrIV 321391 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=17.03;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1787,192,0 chrIV 321404 . T G 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.405;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;MQRankSum=-0.640;QD=15.78;ReadPosRankSum=1.582;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1485,174,0 chrIV 321421 . G T 1270 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=16.71;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1303,144,0 chrIV 321602 . A G 1212 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=17.82;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1245,147,0 chrIV 321609 . C T 1200 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=17.91;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1233,138,0 chrIV 321674 . A T 2226 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=22.71;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2259,243,0 chrIV 321827 . C A 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=7.668;HaplotypeScore=3.4791;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=1.643;QD=16.72;ReadPosRankSum=1.446;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2123,237,0 chrIV 321836 . T A 2156 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.7523;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=15.74;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2189,243,0 chrIV 321844 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=14.32;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2009,222,0 chrIV 321898 . G T 1492 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5616;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;QD=10.29;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1525,171,0 chrIV 321912 . C G 1272 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0375;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=9.42;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1305,150,0 chrIV 321923 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.2234;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=11.31;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1616,189,0 chrIV 321997 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2042;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.074;QD=18.43;ReadPosRankSum=1.673;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2189,243,0 chrIV 322001 . T G 2088 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=5.4702;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.00;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2121,246,0 chrIV 322379 . T C 2912 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=142;Dels=0.00;FS=3.301;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.308;QD=20.51;ReadPosRankSum=1.707;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,138:142:99:2945,336,0 chrIV 322387 . A G 2812 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.09;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2845,333,0 chrIV 322389 . A G 2916 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.39;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2949,345,0 chrIV 322420 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3357;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.46;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2373,270,0 chrIV 322548 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.22;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2544,294,0 chrIV 322657 . A T 2242 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.11;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2275,249,0 chrIV 322680 . A C 2030 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.60;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2063,234,0 chrIV 323098 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2239,243,0 chrIV 323200 . G T 2389 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.15;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2422,258,0 chrIV 323612 . T C 1624 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.82;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1657,189,0 chrIV 323630 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=22.10;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1646,177,0 chrIV 323657 . A G 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=-0.444;QD=18.04;ReadPosRankSum=2.384;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1386,159,0 chrIV 323681 . T C 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=5.408;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;MQRankSum=-1.260;QD=12.07;ReadPosRankSum=1.680;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:842,105,0 chrIV 323690 . A T 284 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=41.3323;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;QD=4.30;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:36:317,36,0 chrIV 323714 . A G 662 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=11.61;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:695,81,0 chrIV 323719 . T C 700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;MQRankSum=-1.572;QD=10.77;ReadPosRankSum=1.679;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:84:733,84,0 chrIV 323762 . T C 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-1.833;QD=15.11;ReadPosRankSum=1.601;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1000,114,0 chrIV 324000 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.84;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2248,252,0 chrIV 324403 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.65;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3172,360,0 chrIV 324926 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.82;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2954,333,0 chrIV 325079 . C A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.34;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3755,414,0 chrIV 325337 . A C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0255;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.799;QD=21.48;ReadPosRankSum=2.169;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3083,345,0 chrIV 326208 . C T 2648 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.06;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2681,285,0 chrIV 326210 . G C 2452 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.31;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2485,279,0 chrIV 326469 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.56;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4006,453,0 chrIV 326516 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=197;Dels=0.00;FS=2.962;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.143;QD=21.11;ReadPosRankSum=2.425;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4159,471,0 chrIV 326523 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.95;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4190,462,0 chrIV 326684 . G C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.8384;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.66;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3704,429,0 chrIV 326933 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.46;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2998,336,0 chrIV 326984 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=157;Dels=0.00;FS=3.239;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.244;QD=23.06;ReadPosRankSum=1.665;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3621,411,0 chrIV 327158 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=3.233;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.541;QD=22.78;ReadPosRankSum=1.710;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3667,417,0 chrIV 327267 . C T 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.138;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6372;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=1.600;QD=19.26;ReadPosRankSum=1.006;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2113,228,0 chrIV 327281 . T G 1945 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.0497;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.07;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1978,228,0 chrIV 327428 . T C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.454;QD=21.53;ReadPosRankSum=1.670;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2466,279,0 chrIV 327461 . T C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=2.663;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.231;QD=24.25;ReadPosRankSum=2.337;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2700,306,0 chrIV 327527 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.35;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3363,384,0 chrIV 327548 . A C 3022 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.25;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3055,354,0 chrIV 327647 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3091,336,0 chrIV 327753 . A G 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=136;Dels=0.00;FS=5.889;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.370;QD=22.06;ReadPosRankSum=2.904;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3033,348,0 chrIV 328031 . G T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.04;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3255,351,0 chrIV 328142 . A G 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=112;Dels=0.00;FS=2.851;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.648;QD=21.21;ReadPosRankSum=2.406;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2409,273,0 chrIV 328153 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.46;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2415,261,0 chrIV 328361 . T C 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-1.341;QD=23.15;ReadPosRankSum=1.702;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2718,306,0 chrIV 328502 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=8.038;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.454;QD=21.59;ReadPosRankSum=2.414;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3013,354,0 chrIV 328835 . A G 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.519;QD=22.43;ReadPosRankSum=1.679;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2949,336,0 chrIV 328957 . A C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=3.782;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.705;QD=23.18;ReadPosRankSum=1.652;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3047,339,0 chrIV 329052 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.41;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3301,369,0 chrIV 329133 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.01;FS=3.195;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.601;QD=22.83;ReadPosRankSum=1.708;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3310,369,0 chrIV 329234 . C A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3673,399,0 chrIV 329319 . G C 2826 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.43;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2859,324,0 chrIV 329842 . T C 1571 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1604,177,0 chrIV 330160 . A C 5735.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.1920;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.90;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5735,669,0 chrIV 330288 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4044,453,0 chrIV 330517 . C T 4805.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.03;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4805,531,0 chrIV 330614 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=23.03;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4513,483,0 chrIV 330635 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=181.7035;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=19.59;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4094,441,0 chrIV 330653 . A C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=3.030;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=0.285;QD=17.91;ReadPosRankSum=1.717;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4047,465,0 chrIV 330814 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.16;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3767,438,0 chrIV 330985 . C G 4428.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.06;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4428,504,0 chrIV 331794 . A G 2287 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.42;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2320,261,0 chrIV 331815 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.82;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1866,204,0 chrIV 331885 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.92;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1867,201,0 chrIV 332001 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=89;Dels=0.00;FS=7.495;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.807;QD=22.00;ReadPosRankSum=2.393;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:2,85:89:99:1991,225,0 chrIV 332036 . A T 1821 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.96;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1854,198,0 chrIV 332115 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.75;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2289,252,0 chrIV 332557 . G T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=25.56;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3254,354,0 chrIV 332733 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.29;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1900,210,0 chrIV 332744 . G T 1872 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=19.30;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1905,213,0 chrIV 332769 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.84;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1653,186,0 chrIV 332781 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.37;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1602,180,0 chrIV 332817 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.22;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1118,135,0 chrIV 333019 . G A 838 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=23.28;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:93:871,93,0 chrIV 333466 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=152;Dels=0.00;FS=2.970;HaplotypeScore=11.7733;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.229;QD=22.73;ReadPosRankSum=2.417;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3455,399,0 chrIV 333580 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.346;QD=22.59;ReadPosRankSum=1.710;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3615,423,0 chrIV 333642 . T A 2834 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.47;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2867,312,0 chrIV 333682 . G C 3083 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.69;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3116,363,0 chrIV 333753 . A T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.59;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3774,411,0 chrIV 333754 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.59;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3774,408,0 chrIV 334049 . T A 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.699;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.409;QD=25.07;ReadPosRankSum=1.640;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1913,207,0 chrIV 334214 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.36;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3102,345,0 chrIV 334393 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.118;DP=165;Dels=0.00;FS=8.878;HaplotypeScore=16.6741;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.444;QD=21.69;ReadPosRankSum=3.385;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:4,160:165:99:3579,405,0 chrIV 334709 . C T 5512.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.8519;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.46;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5512,603,0 chrIV 334761 . G C 4687.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.53;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4687,546,0 chrIV 334829 . C T 5689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.734;QD=23.41;ReadPosRankSum=-0.093;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5689,621,0 chrIV 334888 . T C 6595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=344;Dels=0.00;FS=5.218;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=1.307;QD=19.17;ReadPosRankSum=2.909;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:3,340:344:99:6595,756,0 chrIV 334894 . T C 6561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.425;QD=19.30;ReadPosRankSum=1.712;SB=-3.171e+03 GT:AD:DP:GQ:PL 1/1:1,338:340:99:6561,738,0 chrIV 334954 . T G 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=289;Dels=0.00;FS=2.957;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.476;QD=17.45;ReadPosRankSum=2.312;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:2,284:289:99:5044,564,0 chrIV 335332 . A C 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=8.193;HaplotypeScore=15.2580;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.242;QD=22.72;ReadPosRankSum=2.408;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4090,462,0 chrIV 335392 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.021;QD=19.98;ReadPosRankSum=1.669;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3276,372,0 chrIV 335410 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.36;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3044,348,0 chrIV 335428 . C A 3045 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.68;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3078,336,0 chrIV 335524 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.0114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4240,483,0 chrIV 336327 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.944;QD=23.02;ReadPosRankSum=2.386;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2703,306,0 chrIV 336657 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.11;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3179,345,0 chrIV 336884 . C G 3526.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.05;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3526,399,0 chrIV 336922 . C G 3924.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.08;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3924,441,0 chrIV 336943 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=183;Dels=0.00;FS=2.925;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.584;QD=21.45;ReadPosRankSum=2.382;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3925,459,0 chrIV 337582 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.97;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4482,483,0 chrIV 337779 . A T 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.534;QD=22.66;ReadPosRankSum=2.399;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3286,363,0 chrIV 337809 . A G 2933 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.5725;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.65;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2966,339,0 chrIV 337920 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.51;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3312,369,0 chrIV 338241 . A T 2363 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2396,267,0 chrIV 338279 . T C 2180 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.19;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2213,255,0 chrIV 338341 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.59;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2394,261,0 chrIV 338368 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.29;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2455,276,0 chrIV 338644 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.624;QD=21.12;ReadPosRankSum=1.709;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3180,363,0 chrIV 338718 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.49;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3396,369,0 chrIV 339115 . T C 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.0266;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.297;QD=23.23;ReadPosRankSum=1.701;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5204,588,0 chrIV 339391 . A G 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.315;QD=21.42;ReadPosRankSum=1.706;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2882,336,0 chrIV 339421 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.38;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2786,315,0 chrIV 339528 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.55;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2964,324,0 chrIV 339556 . T C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=133;Dels=0.00;FS=13.088;HaplotypeScore=12.0506;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.479;QD=21.53;ReadPosRankSum=3.337;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:4,126:133:99:2896,330,0 chrIV 339743 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.43;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3128,339,0 chrIV 339988 . A T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3371,375,0 chrIV 340208 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.44;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3561,384,0 chrIV 340351 . C T 2118 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=18.74;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2151,237,0 chrIV 340555 . G T 3025 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.9082;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.45;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3058,342,0 chrIV 340620 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.69;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3065,330,0 chrIV 340845 . A G 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.643;QD=22.38;ReadPosRankSum=1.699;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2383,270,0 chrIV 340904 . C A 2328 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.73;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2361,255,0 chrIV 340933 . A G 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-1.232;QD=17.88;ReadPosRankSum=1.699;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1893,210,0 chrIV 340956 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=16.54;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1770,192,0 chrIV 340965 . A T 1675 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=16.42;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1708,189,0 chrIV 341008 . T G 1587 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=16.19;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1620,186,0 chrIV 341033 . G A 1668 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=15.89;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1701,183,0 chrIV 341036 . T C 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.797;QD=16.25;ReadPosRankSum=1.697;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1658,186,0 chrIV 341381 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=156;Dels=0.00;FS=5.661;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.799;QD=20.99;ReadPosRankSum=2.929;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3274,372,0 chrIV 341401 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.24;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3070,336,0 chrIV 341421 . C A 2757 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.05;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2790,303,0 chrIV 341782 . A G 2808 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.06;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2841,321,0 chrIV 341786 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.12;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2806,312,0 chrIV 341812 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.60;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2619,285,0 chrIV 341953 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.0854;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.90;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2689,294,0 chrIV 341978 . A C 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.043;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.091;QD=19.69;ReadPosRankSum=1.555;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:2,119:124:99:2475,285,0 chrIV 342525 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.55;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4198,456,0 chrIV 342600 . A G 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=3.729;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.675;QD=23.32;ReadPosRankSum=1.713;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4174,471,0 chrIV 342650 . T C 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.157;QD=22.43;ReadPosRankSum=2.417;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5091,588,0 chrIV 342759 . C T 5943.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.7541;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5943,654,0 chrIV 342797 . T G 5396.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5396,624,0 chrIV 343292 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.52;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3073,330,0 chrIV 343410 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.82;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4120,447,0 chrIV 343448 . T C 4650.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.97;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4650,528,0 chrIV 344216 . C G 1088 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.76;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1121,135,0 chrIV 344480 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=4.281;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.526;QD=21.62;ReadPosRankSum=1.680;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4367,513,0 chrIV 344717 . C T 4712.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.52;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4712,513,0 chrIV 344899 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.3545;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.79;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4249,474,0 chrIV 344945 . T A 5640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=254;Dels=0.00;FS=2.811;HaplotypeScore=30.2201;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.218;QD=22.20;ReadPosRankSum=2.401;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:5640,615,0 chrIV 345017 . C T 7596.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=13.8302;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.27;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,312:313:99:7596,831,0 chrIV 345134 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.1764;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.14;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4692,537,0 chrIV 345195 . A G 5908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.528;QD=20.51;ReadPosRankSum=2.962;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,284:288:99:5908,684,0 chrIV 345209 . A G 5517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=261;Dels=0.00;FS=2.351;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.824;QD=21.14;ReadPosRankSum=3.428;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:4,257:261:99:5517,639,0 chrIV 345524 . T C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=144;Dels=0.00;FS=6.113;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-1.458;QD=19.01;ReadPosRankSum=2.923;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2771,318,0 chrIV 345541 . A T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.44;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3344,366,0 chrIV 345638 . A G 4862.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.60;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4862,555,0 chrIV 345766 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.97;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3732,408,0 chrIV 345769 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=3.452;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.391;QD=19.54;ReadPosRankSum=1.658;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3634,414,0 chrIV 346096 . C T 4542.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.16;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4542,489,0 chrIV 346111 . T C 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=208;Dels=0.00;FS=6.472;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.564;QD=21.64;ReadPosRankSum=2.367;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4501,507,0 chrIV 346360 . C A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=21.13;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3339,369,0 chrIV 346366 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.01;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3175,357,0 chrIV 346477 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.14;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4079,450,0 chrIV 346531 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=148;Dels=0.00;FS=5.656;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.299;QD=20.57;ReadPosRankSum=2.871;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3077,354,0 chrIV 346536 . T C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.147;QD=20.67;ReadPosRankSum=1.710;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3216,360,0 chrIV 346558 . G A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.09;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3754,405,0 chrIV 346745 . G A 4622.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.72;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4622,495,0 chrIV 346846 . T A 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=173;Dels=0.00;FS=3.572;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.270;QD=21.49;ReadPosRankSum=1.672;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3717,417,0 chrIV 346980 . A T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.42;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3282,360,0 chrIV 346984 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.162;QD=18.98;ReadPosRankSum=1.479;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3202,360,0 chrIV 347033 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.36;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3379,372,0 chrIV 347059 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.697;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.658;QD=19.58;ReadPosRankSum=1.712;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3348,381,0 chrIV 347076 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9874;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.27;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3488,384,0 chrIV 347078 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=166;Dels=0.00;FS=5.452;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.145;QD=20.06;ReadPosRankSum=2.934;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3330,381,0 chrIV 347545 . A T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.99;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3564,393,0 chrIV 347619 . C G 2846 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.49;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2879,327,0 chrIV 347623 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.60;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2757,312,0 chrIV 347851 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.81;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3181,351,0 chrIV 347958 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.6064;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.54;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3602,405,0 chrIV 348204 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.24;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2190,237,0 chrIV 348434 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.00;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2001,216,0 chrIV 348489 . A T 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.770;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.535;QD=19.12;ReadPosRankSum=1.689;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1582,171,0 chrIV 348490 . A G 1476 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.22;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1509,174,0 chrIV 348697 . A G 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=119;Dels=0.00;FS=8.434;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.178;QD=23.97;ReadPosRankSum=2.366;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2885,327,0 chrIV 348778 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.15;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2786,303,0 chrIV 348931 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.50;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3041,339,0 chrIV 349051 . C G 2943 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8518;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.80;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2976,339,0 chrIV 349421 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2935,327,0 chrIV 349591 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2552,285,0 chrIV 350046 . A G 2899 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.36;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2932,327,0 chrIV 350077 . A G 2806 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.00;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2839,324,0 chrIV 350346 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.423;QD=23.55;ReadPosRankSum=1.608;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2671,303,0 chrIV 350405 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.41;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3301,372,0 chrIV 350462 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=3.040;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.247;QD=22.73;ReadPosRankSum=2.361;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3193,360,0 chrIV 350645 . C A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.00;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3528,381,0 chrIV 350693 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.8142;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.13;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3608,405,0 chrIV 350782 . A C 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=235;Dels=0.00;FS=4.337;HaplotypeScore=19.2875;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-0.820;QD=22.14;ReadPosRankSum=1.717;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,227:235:99:5204,606,0 chrIV 351028 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.131;DP=192;Dels=0.00;FS=4.564;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;MQRankSum=2.135;QD=10.31;ReadPosRankSum=4.161;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:7,185:192:99:2013,228,0 chrIV 351097 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.61;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3104,342,0 chrIV 351102 . A C 2762 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.79;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2795,315,0 chrIV 351139 . T A 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=4.025;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.265;QD=19.72;ReadPosRankSum=1.684;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2873,324,0 chrIV 351207 . G T 2616 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3937;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.67;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2649,294,0 chrIV 351214 . C A 2426 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=19.41;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2459,267,0 chrIV 351451 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.5445;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.27;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3218,366,0 chrIV 351862 . G A 4154.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.30;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4154,483,0 chrIV 351963 . A G 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=188;Dels=0.00;FS=7.994;HaplotypeScore=8.7767;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.215;QD=21.89;ReadPosRankSum=2.423;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,183:188:99:4116,453,0 chrIV 351988 . C T 4536.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.1775;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.40;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4536,513,0 chrIV 352048 . G A 5713.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=16.7297;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.41;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5713,627,0 chrIV 352180 . A G 5478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=267;Dels=0.00;FS=3.092;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.279;QD=20.52;ReadPosRankSum=1.628;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:5478,621,0 chrIV 352550 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.313;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.564;QD=22.00;ReadPosRankSum=1.693;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3938,450,0 chrIV 352697 . T C 4807.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.27;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4807,546,0 chrIV 352756 . T C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=167;Dels=0.00;FS=3.005;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.142;QD=18.46;ReadPosRankSum=2.390;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,162:167:99:3115,363,0 chrIV 352765 . G C 3129 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.51;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3162,372,0 chrIV 352902 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.9378;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.71;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3181,351,0 chrIV 353410 . T C 3810.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3810,432,0 chrIV 353682 . T G 4624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.534;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=20.3972;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.141;QD=23.01;ReadPosRankSum=2.339;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4624,513,0 chrIV 354016 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=2.573;HaplotypeScore=16.0299;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.106;QD=22.83;ReadPosRankSum=2.365;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4018,453,0 chrIV 354052 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=157;Dels=0.00;FS=5.487;HaplotypeScore=8.9850;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.635;QD=22.53;ReadPosRankSum=2.930;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3537,396,0 chrIV 354127 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.71;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3370,369,0 chrIV 354130 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.83;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3431,375,0 chrIV 354238 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.69;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4142,462,0 chrIV 354286 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.33;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4316,465,0 chrIV 354889 . G A 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.924;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.702;QD=23.32;ReadPosRankSum=1.613;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2738,306,0 chrIV 354974 . A G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=83;Dels=0.00;FS=3.174;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.406;QD=18.02;ReadPosRankSum=1.647;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1529,174,0 chrIV 354989 . A C 1347 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.27;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1380,162,0 chrIV 355162 . A G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.219;QD=23.95;ReadPosRankSum=1.700;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2644,300,0 chrIV 355467 . A G 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;MQRankSum=0.866;QD=22.00;ReadPosRankSum=1.670;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1265,144,0 chrIV 355572 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.37;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2367,258,0 chrIV 355621 . A T 2871 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5427;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.97;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2904,312,0 chrIV 355968 . G A 5251.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.88;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5251,576,0 chrIV 356226 . A G 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=219;Dels=0.00;FS=4.040;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.605;QD=22.21;ReadPosRankSum=1.653;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4864,552,0 chrIV 356562 . C T 5831.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=17.1649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5831,633,0 chrIV 356766 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=150;Dels=0.00;FS=2.872;HaplotypeScore=13.4735;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.714;QD=20.18;ReadPosRankSum=2.399;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:3060,348,0 chrIV 356822 . T C 3132 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.75;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3165,363,0 chrIV 356898 . T A 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=151;Dels=0.00;FS=10.697;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.007;QD=20.83;ReadPosRankSum=1.914;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3178,319,0 chrIV 356951 . T G 1809 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=12.65;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:1842,207,0 chrIV 356965 . A G 1431 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=11.36;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1464,168,0 chrIV 356968 . C G 1496 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=11.87;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1529,177,0 chrIV 357201 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.173;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.202;QD=19.81;ReadPosRankSum=0.635;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2470,265,0 chrIV 357312 . T C 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.7499;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.116;QD=22.26;ReadPosRankSum=1.717;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5052,588,0 chrIV 357370 . A T 5331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=222;Dels=0.00;FS=6.836;HaplotypeScore=13.3720;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.125;QD=24.01;ReadPosRankSum=1.623;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5331,588,0 chrIV 357529 . C T 5979.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.39;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5979,651,0 chrIV 357632 . A C 4337.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4337,489,0 chrIV 357802 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=20.06;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3183,345,0 chrIV 358035 . A T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=22.72;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3749,414,0 chrIV 358050 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.72;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3581,384,0 chrIV 358099 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.16;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3789,432,0 chrIV 358171 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.4646;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-1.494;QD=22.61;ReadPosRankSum=1.710;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3617,408,0 chrIV 358197 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=23.84;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3552,384,0 chrIV 358230 . T A 2919 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=21.62;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2952,327,0 chrIV 358243 . T C 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=-0.187;QD=19.42;ReadPosRankSum=1.705;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2577,297,0 chrIV 358273 . A G 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.603;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=19.2024;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.783;QD=16.26;ReadPosRankSum=1.706;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2260,264,0 chrIV 358299 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=8.028;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.190;QD=15.60;ReadPosRankSum=2.387;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2498,276,0 chrIV 358348 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.53;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2868,318,0 chrIV 358389 . C T 1801 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=14.64;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1834,210,0 chrIV 358399 . T C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;MQRankSum=-0.728;QD=13.20;ReadPosRankSum=1.700;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:1472,168,0 chrIV 358411 . C T 1422 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=13.54;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1455,162,0 chrIV 358431 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=12.21;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1291,147,0 chrIV 358448 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=12.39;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1272,147,0 chrIV 358467 . C A 1210 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=13.75;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:88:99:1243,141,0 chrIV 358468 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=13.42;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1268,147,0 chrIV 358672 . T C 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=1.380;QD=21.73;ReadPosRankSum=1.705;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2814,321,0 chrIV 358690 . G T 2606 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=19.74;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2639,291,0 chrIV 358707 . T G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=2.926;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=1.251;QD=18.70;ReadPosRankSum=2.313;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3081,345,0 chrIV 358755 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.08;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3334,378,0 chrIV 358791 . G A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=24.53;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4293,465,0 chrIV 358884 . A C 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=3.651;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.274;QD=21.55;ReadPosRankSum=1.715;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4418,519,0 chrIV 358932 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=20.31;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4388,501,0 chrIV 358945 . G A 4544.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=21.04;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4544,495,0 chrIV 358984 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=17.45;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3385,378,0 chrIV 358989 . T A 3189 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=16.70;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3222,351,0 chrIV 359007 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=16.37;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2685,291,0 chrIV 359028 . A G 2767 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.0025;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.29;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2800,315,0 chrIV 359072 . A T 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.966;QD=20.85;ReadPosRankSum=1.697;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4149,456,0 chrIV 359094 . T C 4704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=229;Dels=0.00;FS=8.338;HaplotypeScore=6.3583;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.198;QD=20.54;ReadPosRankSum=2.417;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:4704,549,0 chrIV 359167 . G A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.45;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4573,489,0 chrIV 359235 . A T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=21.25;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3357,354,0 chrIV 359239 . T C 2794 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=18.03;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2827,324,0 chrIV 359293 . T G 3055 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7254;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=18.98;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3088,354,0 chrIV 359402 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.149;DP=152;Dels=0.00;FS=3.866;HaplotypeScore=5.2668;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.434;QD=22.78;ReadPosRankSum=-0.516;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3462,372,0 chrIV 359411 . A T 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.5489;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.416;QD=22.37;ReadPosRankSum=1.709;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3356,369,0 chrIV 359479 . C A 2694 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=23.84;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2727,300,0 chrIV 359529 . T C 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.806;QD=21.28;ReadPosRankSum=1.702;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2502,282,0 chrIV 359534 . A T 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.788;HaplotypeScore=3.8983;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.227;QD=20.96;ReadPosRankSum=1.675;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2590,279,0 chrIV 360404 . G C 3895.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3895,453,0 chrIV 360631 . C G 5567.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.89;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5567,633,0 chrIV 360665 . T C 4796.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=18.7814;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.52;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4796,537,0 chrIV 361157 . G A 4417.01 SnpCluster AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.74;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4417,480,0 chrIV 361162 . T C 4314.01 SnpCluster AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.97;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4314,486,0 chrIV 361166 . C T 4457.01 SnpCluster AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.08;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4457,501,0 chrIV 361319 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.9057;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.55;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4149,474,0 chrIV 361672 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8669;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.75;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2717,297,0 chrIV 361711 . T C 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.433;QD=24.11;ReadPosRankSum=1.660;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2348,267,0 chrIV 361775 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9172;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2422,264,0 chrIV 361844 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=3.236;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.184;QD=21.82;ReadPosRankSum=1.710;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3491,405,0 chrIV 361942 . A G 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=184;Dels=0.00;FS=14.530;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.962;QD=23.47;ReadPosRankSum=2.962;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4319,486,0 chrIV 362993 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=162;Dels=0.00;FS=2.905;HaplotypeScore=10.4762;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-2.081;QD=21.95;ReadPosRankSum=2.419;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3556,402,0 chrIV 363511 . A G 4681.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.1022;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4681,534,0 chrIV 363860 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.13;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3331,369,0 chrIV 364948 . A G 669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.347;QD=16.72;ReadPosRankSum=1.646;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:81:702,81,0 chrIV 364951 . G T 627 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.67;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:660,72,0 chrIV 365027 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.30;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1251,141,0 chrIV 365060 . T C 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.640;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.803;QD=20.94;ReadPosRankSum=2.919;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1855,213,0 chrIV 365434 . T C 4974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=236;Dels=0.00;FS=6.652;HaplotypeScore=12.6029;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.026;QD=21.08;ReadPosRankSum=2.398;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:4974,579,0 chrIV 365716 . T C 5195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=244;Dels=0.00;FS=3.952;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.301;QD=21.29;ReadPosRankSum=1.718;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,240:244:99:5195,603,0 chrIV 365740 . T C 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=237;Dels=0.00;FS=8.080;HaplotypeScore=8.5841;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.883;QD=20.89;ReadPosRankSum=2.408;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:2,233:237:99:4951,567,0 chrIV 365812 . A G 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=4.9730;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.450;QD=18.75;ReadPosRankSum=2.420;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:4651,531,0 chrIV 365821 . A G 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.384;QD=18.98;ReadPosRankSum=1.703;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:4537,510,0 chrIV 365975 . C A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.50;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4112,447,0 chrIV 366072 . A G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=193;Dels=0.00;FS=3.857;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.335;QD=23.18;ReadPosRankSum=1.696;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4473,504,0 chrIV 366629 . C G 3433.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.15;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3433,387,0 chrIV 366913 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=3.001;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.500;QD=20.74;ReadPosRankSum=2.351;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3144,363,0 chrIV 367042 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=3.222;HaplotypeScore=16.8812;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.588;QD=21.17;ReadPosRankSum=1.711;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3599,408,0 chrIV 367147 . G A 5133.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.51;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5133,564,0 chrIV 367169 . T G 4462.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.7501;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.37;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4462,507,0 chrIV 367213 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.478;QD=20.95;ReadPosRankSum=1.696;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4002,447,0 chrIV 367312 . C T 6076.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.02;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6076,652,0 chrIV 367539 . G A 5327.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.7750;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.29;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5327,573,0 chrIV 367564 . G C 4219.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.35;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,210:218:99:4219,486,0 chrIV 368207 . A G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.8561;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.520;QD=21.67;ReadPosRankSum=1.703;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2634,306,0 chrIV 368620 . G C 3040 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7849;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.19;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3073,354,0 chrIV 368735 . G A 2179 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2630;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.78;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2212,240,0 chrIV 369366 . C A 1934 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.45;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1967,216,0 chrIV 369582 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=124;Dels=0.00;FS=4.307;HaplotypeScore=7.7812;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.704;QD=21.90;ReadPosRankSum=1.257;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2748,312,0 chrIV 369971 . G T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.2694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3673,405,0 chrIV 370499 . G A 4497.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.18;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4497,492,0 chrIV 370634 . G C 2223 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2256,264,0 chrIV 370968 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrIV 371085 . T C 1401 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1434,165,0 chrIV 371249 . A G 2881 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=20.73;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2914,342,0 chrIV 371263 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6257;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.60;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2953,336,0 chrIV 371383 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8120;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.65;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4234,465,0 chrIV 371461 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=3.376;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.505;QD=21.32;ReadPosRankSum=1.645;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:4264,489,0 chrIV 371623 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=198;Dels=0.00;FS=3.191;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.343;QD=22.56;ReadPosRankSum=1.714;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4466,519,0 chrIV 371665 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.7655;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.470;QD=21.01;ReadPosRankSum=1.652;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:3677,417,0 chrIV 371692 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=156;Dels=0.00;FS=6.276;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.654;QD=20.44;ReadPosRankSum=2.292;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3221,366,0 chrIV 371854 . G T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=21.72;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3475,375,0 chrIV 371914 . T A 3119 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.77;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3152,336,0 chrIV 372053 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=21.40;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2836,312,0 chrIV 372060 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=21.64;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2803,315,0 chrIV 372084 . A T 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=-1.146;QD=19.89;ReadPosRankSum=1.705;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2619,285,0 chrIV 372093 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=123;Dels=0.00;FS=10.039;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;MQRankSum=-1.190;QD=17.30;ReadPosRankSum=2.943;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2161,246,0 chrIV 372119 . C T 1541 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=15.89;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1574,177,0 chrIV 372125 . A G 1470 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=15.47;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1503,171,0 chrIV 372201 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.72;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3117,345,0 chrIV 372238 . G T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.8738;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=23.99;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3671,393,0 chrIV 372289 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=21.19;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3190,357,0 chrIV 372295 . A G 3131 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=20.33;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3164,360,0 chrIV 372358 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=3.495;HaplotypeScore=5.4725;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=1.237;QD=21.63;ReadPosRankSum=1.711;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3482,396,0 chrIV 372385 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-1.984;QD=19.24;ReadPosRankSum=2.333;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3270,369,0 chrIV 372390 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=20.48;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3399,369,0 chrIV 372433 . T A 2813 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.63;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2846,315,0 chrIV 372445 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.18;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2451,264,0 chrIV 372540 . A T 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3276;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.133;QD=20.05;ReadPosRankSum=1.652;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2659,288,0 chrIV 372546 . A C 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.5948;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.172;QD=17.75;ReadPosRankSum=1.907;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2447,282,0 chrIV 372757 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=174;Dels=0.00;FS=11.967;HaplotypeScore=8.9437;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.348;QD=22.74;ReadPosRankSum=2.407;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3957,465,0 chrIV 372821 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.22;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3754,405,0 chrIV 372855 . T C 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=3.346;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.445;QD=21.27;ReadPosRankSum=1.712;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3765,432,0 chrIV 373089 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3406,369,0 chrIV 373363 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.39;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2699,303,0 chrIV 373661 . G C 2850 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.09;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2883,330,0 chrIV 373723 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.858;QD=19.56;ReadPosRankSum=1.698;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2048,231,0 chrIV 373728 . T C 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=105;Dels=0.00;FS=3.019;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.155;QD=17.64;ReadPosRankSum=2.354;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,101:105:99:1885,213,0 chrIV 373922 . T A 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=3.768;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.143;QD=23.30;ReadPosRankSum=1.628;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2363,258,0 chrIV 374240 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.85;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3564,402,0 chrIV 374282 . C G 3751.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3751,432,0 chrIV 374633 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=122;Dels=0.00;FS=8.086;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.454;QD=21.43;ReadPosRankSum=2.409;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2648,309,0 chrIV 374794 . T G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=3.087;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.598;QD=20.15;ReadPosRankSum=1.651;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3445,405,0 chrIV 374879 . A T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.47;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3685,408,0 chrIV 374903 . G C 3572.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.84;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3572,408,0 chrIV 374909 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.58;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3766,405,0 chrIV 375032 . T A 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.550;QD=23.55;ReadPosRankSum=1.709;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3580,387,0 chrIV 375077 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.69;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3789,411,0 chrIV 375103 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.04;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3207,348,0 chrIV 375171 . A G 2499 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.82;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2532,288,0 chrIV 375199 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=4.1445;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.78;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2817,306,0 chrIV 375239 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.32;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3527,405,0 chrIV 375282 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.65;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3760,411,0 chrIV 375335 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.79;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3133,345,0 chrIV 375384 . T A 1942 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.11;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1975,216,0 chrIV 375458 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.2906;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=1.003;QD=23.05;ReadPosRankSum=1.702;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2661,303,0 chrIV 375530 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=5.110;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-1.299;QD=20.94;ReadPosRankSum=1.703;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2567,297,0 chrIV 375533 . A C 2577 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.12;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2610,294,0 chrIV 375542 . G T 2453 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.27;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2486,279,0 chrIV 375611 . G A 1861 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.91;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1894,207,0 chrIV 375690 . G C 2705 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.99;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2738,309,0 chrIV 375773 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.121;QD=19.83;ReadPosRankSum=1.705;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2611,294,0 chrIV 375776 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.551;QD=19.68;ReadPosRankSum=1.705;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2592,297,0 chrIV 375826 . A T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.57;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3814,414,0 chrIV 375932 . T G 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=6.416;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.400;QD=23.70;ReadPosRankSum=2.391;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4005,447,0 chrIV 376661 . T A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7570;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.83;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3356,363,0 chrIV 376867 . T C 2721 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.0632;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.49;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2754,315,0 chrIV 377176 . T C 3056 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.15;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3089,348,0 chrIV 377306 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.22;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2499,276,0 chrIV 377486 . T G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=122;Dels=0.00;FS=3.121;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.247;QD=22.09;ReadPosRankSum=1.703;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2728,312,0 chrIV 377936 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2345,264,0 chrIV 378086 . T C 3056 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=17.7945;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.93;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3089,354,0 chrIV 378253 . G T 2980 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.41;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3013,339,0 chrIV 378371 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3444,396,0 chrIV 378517 . A T 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.925;QD=23.94;ReadPosRankSum=1.680;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3217,342,0 chrIV 378761 . T G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=6.560;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.282;QD=21.71;ReadPosRankSum=1.642;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1726,198,0 chrIV 378788 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.52;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1474,162,0 chrIV 378801 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.90;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1267,144,0 chrIV 379094 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.44;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2846,312,0 chrIV 379354 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.03;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3386,375,0 chrIV 379372 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.04;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2819,324,0 chrIV 379570 . T C 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.732;QD=23.45;ReadPosRankSum=1.697;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4619,519,0 chrIV 379603 . T A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.5426;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.94;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4621,519,0 chrIV 379882 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.28;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3174,348,0 chrIV 380035 . G A 4857.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.69;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4857,534,0 chrIV 380086 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=3.267;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.563;QD=22.06;ReadPosRankSum=1.688;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3463,396,0 chrIV 380427 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.32;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2268,249,0 chrIV 380580 . T C 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-0.238;QD=21.93;ReadPosRankSum=1.700;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2423,276,0 chrIV 380668 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2295,258,0 chrIV 381268 . C T 4035.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.60;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4035,453,0 chrIV 381346 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2910,318,0 chrIV 381481 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=166;Dels=0.00;FS=8.878;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.329;QD=21.27;ReadPosRankSum=3.299;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:4,161:166:99:3531,399,0 chrIV 381576 . T C 2751 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.37;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2784,318,0 chrIV 381750 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.49;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1475,168,0 chrIV 381770 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.76;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1883,201,0 chrIV 382023 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8526;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.58;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3796,411,0 chrIV 382229 . T C 5572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=250;Dels=0.00;FS=11.005;HaplotypeScore=17.4254;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.145;QD=22.29;ReadPosRankSum=2.876;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:3,247:250:99:5572,624,0 chrIV 382330 . C T 5642.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=22.04;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,253:256:99:5642,636,0 chrIV 382372 . C T 5107.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.40;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5107,573,0 chrIV 382396 . A G 4506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=235;Dels=0.00;FS=3.342;HaplotypeScore=6.5644;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.832;QD=19.17;ReadPosRankSum=1.717;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:1,230:235:99:4506,528,0 chrIV 382422 . C T 5353.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.99;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5353,574,0 chrIV 382655 . T C 5287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=243;Dels=0.00;FS=3.572;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.544;QD=21.76;ReadPosRankSum=1.718;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:1,238:243:99:5287,600,0 chrIV 382830 . C T 4487.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.89;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4487,498,0 chrIV 383033 . A G 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=231;Dels=0.00;FS=11.658;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-1.309;QD=21.44;ReadPosRankSum=2.970;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:3,228:231:99:4953,564,0 chrIV 383038 . T G 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=234;Dels=0.00;FS=7.971;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-0.734;QD=19.95;ReadPosRankSum=3.766;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:5,227:234:99:4669,543,0 chrIV 383065 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.7145;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.94;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4726,534,0 chrIV 383227 . C T 5109.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=23.22;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5109,579,0 chrIV 383229 . C T 5256.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=23.46;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5256,582,0 chrIV 383274 . T A 5702.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.6718;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=24.37;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5702,630,0 chrIV 383367 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=148;Dels=0.00;FS=7.675;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;MQRankSum=-2.271;QD=21.37;ReadPosRankSum=2.897;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:5,143:148:99:3196,366,0 chrIV 383382 . T C 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.819;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;MQRankSum=-0.980;QD=20.40;ReadPosRankSum=0.658;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2664,312,0 chrIV 383386 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9402;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=18.97;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2423,287,0 chrIV 383395 . G A 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=1;MQRankSum=-0.747;QD=19.44;ReadPosRankSum=0.836;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2327,273,0 chrIV 383425 . T A 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.317;DP=122;Dels=0.00;FS=16.439;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=1;MQRankSum=2.967;QD=15.87;ReadPosRankSum=2.235;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:21,101:122:99:1969,164,0 chrIV 383443 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=2;QD=17.76;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2288,267,0 chrIV 383513 . G C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=9.8313;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=1.061;QD=0.87;ReadPosRankSum=2.003;SB=-6.953e-03 GT:AD:DP:GQ:PL 0/1:9,2:13:37:41,0,37 chrIV 383519 . G T 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=11.2918;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=0;MQRankSum=-0.306;QD=0.64;ReadPosRankSum=-4.054;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,22:36:53:53,0,101 chrIV 383521 . G A 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=13.2568;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=0;MQRankSum=-0.084;QD=0.64;ReadPosRankSum=-1.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,24:36:53:53,0,104 chrIV 383528 . A G 240 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=17.1631;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;MQRankSum=0.870;QD=5.11;ReadPosRankSum=2.345;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:2,45:47:33:273,33,0 chrIV 383530 . A G 138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=13.7540;MLEAC=1;MLEAF=0.500;MQ=27.48;MQ0=0;MQRankSum=0.449;QD=3.07;ReadPosRankSum=-4.581;SB=-6.736e-03 GT:AD:DP:GQ:PL 0/1:12,33:45:40:168,0,40 chrIV 383557 . A G 281 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.8906;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;QD=4.76;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:39:314,39,0 chrIV 383561 . G A 290 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.031;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9278;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;MQRankSum=1.487;QD=4.92;ReadPosRankSum=-0.649;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:2,57:59:39:323,39,0 chrIV 383572 . C A 44.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=2.14;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:77,9,0 chrIV 383577 . C T 39.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=1.90;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:72,9,0 chrIV 383934 . T C 23.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DP=47;Dels=0.00;FS=42.099;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=0;MQRankSum=-1.110;QD=0.49;ReadPosRankSum=-2.372;SB=-2.253e+00 GT:AD:DP:GQ:PL 0/1:44,3:47:10:53,0,10 chrIV 383938 . G A 54.51 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=0;QD=1.09;SB=-6.552e+01 GT:AD:DP:GQ:PL 1/1:0,48:50:12:87,12,0 chrIV 383947 . G A 50.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.445;DP=62;Dels=0.00;FS=37.037;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=4;MQRankSum=-4.897;QD=0.81;ReadPosRankSum=-2.479;SB=-2.914e+00 GT:AD:DP:GQ:PL 0/1:42,20:62:7:80,0,7 chrIV 383977 . T A 80.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.478;DP=81;Dels=0.02;FS=15.976;HaplotypeScore=67.3594;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=4;MQRankSum=-2.114;QD=0.99;ReadPosRankSum=2.368;SB=-8.926e+01 GT:AD:DP:GQ:PL 1/1:37,42:79:15:113,15,0 chrIV 383985 . T C 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DP=72;Dels=0.00;FS=2.357;HaplotypeScore=76.8923;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=4;MQRankSum=2.952;QD=0.31;ReadPosRankSum=-1.182;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,12:72:52:52,0,71 chrIV 383986 . A T 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.338;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=67.9735;MLEAC=1;MLEAF=0.500;MQ=23.27;MQ0=4;MQRankSum=3.399;QD=0.33;ReadPosRankSum=-1.527;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:60,13:73:54:54,0,72 chrIV 383988 . C T 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;DP=74;Dels=0.00;FS=4.072;HaplotypeScore=58.1332;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=4;MQRankSum=3.077;QD=0.88;ReadPosRankSum=-2.261;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:59,15:74:65:95,0,65 chrIV 383993 . G C 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DP=67;Dels=0.00;FS=2.820;HaplotypeScore=71.2670;MLEAC=1;MLEAF=0.500;MQ=22.69;MQ0=4;MQRankSum=4.065;QD=2.72;ReadPosRankSum=-4.379;SB=-1.915e+02 GT:AD:DP:GQ:PL 0/1:23,22:67:46:212,0,46 chrIV 384021 . C T 744 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;DP=64;Dels=0.00;FS=14.282;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=4;MQRankSum=4.639;QD=11.62;ReadPosRankSum=4.438;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:20,44:64:58:777,58,0 chrIV 384035 . A G 1419 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=77;Dels=0.00;FS=3.072;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=4;MQRankSum=0.171;QD=18.43;ReadPosRankSum=1.586;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,70:77:99:1452,177,0 chrIV 384083 . G C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=20.49;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3279,395,0 chrIV 384094 . T A 2913 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=19.68;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2946,356,0 chrIV 384103 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=0;QD=20.85;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3182,371,0 chrIV 384146 . T C 2238 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=21.52;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2271,270,0 chrIV 384189 . G A 937 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.109;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.7337;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=0;MQRankSum=-1.455;QD=18.74;ReadPosRankSum=1.663;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:89:970,89,0 chrIV 384191 . C G 947 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=0;QD=20.15;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,43:47:99:980,111,0 chrIV 384197 . T A 812 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.365;DP=37;Dels=0.00;FS=18.112;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=0;MQRankSum=2.810;QD=21.95;ReadPosRankSum=-0.640;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:3,34:37:99:845,99,0 chrIV 384221 . G A 51.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;DP=18;Dels=0.00;FS=3.214;HaplotypeScore=47.3589;MLEAC=2;MLEAF=1.00;MQ=21.24;MQ0=0;MQRankSum=3.510;QD=2.89;ReadPosRankSum=1.288;SB=-5.795e+01 GT:AD:DP:GQ:PL 1/1:8,10:18:9:84,9,0 chrIV 384256 . A G 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=5.7470;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=0;MQRankSum=1.569;QD=4.85;ReadPosRankSum=0.578;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:1,20:27:21:164,21,0 chrIV 384257 . T C 134.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=5.7470;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=0;QD=4.97;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:0,21:27:21:167,21,0 chrIV 384262 . A G 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.237;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.7892;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=0;MQRankSum=3.528;QD=4.85;ReadPosRankSum=1.487;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:6,21:27:21:164,21,0 chrIV 384291 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.238;DP=16;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;MQRankSum=0.079;QD=0.75;ReadPosRankSum=1.826;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,14:16:6:43,6,0 chrIV 384292 . A T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=16;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;MQRankSum=-1.032;QD=0.75;ReadPosRankSum=1.826;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,14:16:6:43,6,0 chrIV 384295 . A T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.191;DP=16;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;MQRankSum=-0.238;QD=0.75;ReadPosRankSum=1.826;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,14:16:6:43,6,0 chrIV 384302 . C G 60.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;DP=40;Dels=0.00;FS=28.921;HaplotypeScore=1.9494;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=0;MQRankSum=-1.086;QD=1.51;ReadPosRankSum=2.203;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,38:40:12:93,12,0 chrIV 384305 . A G 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;QD=1.57;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:12:92,12,0 chrIV 384307 . A G 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.07;MQ0=0;MQRankSum=-0.227;QD=0.30;ReadPosRankSum=4.706;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:14,24:38:31:41,0,31 chrIV 384310 . A T 15.25 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=0;MQRankSum=0.483;QD=0.39;ReadPosRankSum=4.904;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:14,25:39:13:45,0,13 chrIV 384347 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.625;DP=31;Dels=0.00;FS=58.670;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=0;MQRankSum=-1.825;QD=0.54;ReadPosRankSum=3.625;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:6,25:31:6:48,6,0 chrIV 384349 . T A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.325;DP=31;Dels=0.00;FS=58.670;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=0;MQRankSum=-0.475;QD=0.54;ReadPosRankSum=2.825;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:6,25:31:6:48,6,0 chrIV 384363 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=25;Dels=0.00;FS=52.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=0;MQRankSum=-1.941;QD=0.67;ReadPosRankSum=-3.659;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:6,19:25:6:48,6,0 chrIV 384367 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.004;DP=25;Dels=0.00;FS=52.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=0;MQRankSum=-1.941;QD=0.67;ReadPosRankSum=-3.659;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:6,19:25:6:48,6,0 chrIV 384514 . A G 238 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.335;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9822;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-2.453;QD=2.98;ReadPosRankSum=5.666;SB=3.00 GT:AD:DP:GQ:PL 1/1:13,66:80:30:271,30,0 chrIV 384518 . T G 228 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.45;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:30:261,30,0 chrIV 384521 . G A 230 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.48;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:30:263,30,0 chrIV 384523 . G A 243 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.68;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:30:276,30,0 chrIV 384524 . T A 241 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.65;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:30:274,30,0 chrIV 384526 . A G 219 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.32;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:30:252,30,0 chrIV 384527 . A G 234 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.55;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:30:267,30,0 chrIV 384529 . T C 224 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.697;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-2.506;QD=3.15;ReadPosRankSum=3.697;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:5,66:71:30:257,30,0 chrIV 384540 . G A 544 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=4.06;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,134:134:63:577,63,0 chrIV 384541 . G A 555 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=4.14;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,134:134:63:588,63,0 chrIV 384548 . G A 573 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=3.72;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,154:154:69:606,69,0 chrIV 384568 . A G 906 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=5.06;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,179:179:99:939,105,0 chrIV 384581 . T G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;MQRankSum=-0.709;QD=7.28;ReadPosRankSum=2.964;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:3,194:197:99:1468,165,0 chrIV 384595 . T G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;MQRankSum=-1.576;QD=8.89;ReadPosRankSum=2.426;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:1883,216,0 chrIV 384602 . T G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.161;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;MQRankSum=1.239;QD=8.99;ReadPosRankSum=1.616;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:2020,231,0 chrIV 384607 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;QD=10.57;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:2411,276,0 chrIV 384703 . A G 9040.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=368;Dels=0.00;FS=4.166;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;MQRankSum=-0.904;QD=24.57;ReadPosRankSum=1.666;SB=-3.546e+03 GT:AD:DP:GQ:PL 1/1:1,367:368:99:9040,1020,0 chrIV 384757 . G A 8831.01 filter AC=2;AF=1.00;AN=2;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=16.5760;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=23.68;SB=-4.632e+03 GT:AD:DP:GQ:PL 1/1:0,371:373:99:8831,978,0 chrIV 384792 . A C 8407.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=23.10;SB=-4.366e+03 GT:AD:DP:GQ:PL 1/1:0,360:364:99:8407,957,0 chrIV 384885 . A T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1658;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=0;QD=22.85;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4045,459,0 chrIV 384899 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=22.61;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2814,306,0 chrIV 384900 . A T 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;MQRankSum=-2.959;QD=22.26;ReadPosRankSum=2.892;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2726,306,0 chrIV 384914 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=22.80;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1401,153,0 chrIV 384915 . A T 1297 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1330,153,0 chrIV 385030 . A C 35.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;DP=17;Dels=0.00;FS=20.434;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.15;MQ0=0;MQRankSum=0.337;QD=2.06;ReadPosRankSum=-3.512;SB=-5.857e+01 GT:AD:DP:GQ:PL 0/1:9,8:17:15:65,0,15 chrIV 385035 . T A 245.79 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;DP=49;Dels=0.00;FS=13.485;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;MQRankSum=1.253;QD=5.02;ReadPosRankSum=-3.882;SB=-3.608e+02 GT:AD:DP:GQ:PL 1/1:10,39:49:10:278,10,0 chrIV 385050 . T A 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.520;DP=97;Dels=0.00;FS=30.172;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;MQRankSum=1.298;QD=13.76;ReadPosRankSum=-0.159;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:12,85:97:99:1368,120,0 chrIV 385114 . T C 6221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=292;Dels=0.00;FS=8.041;HaplotypeScore=11.8694;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-1.651;QD=21.30;ReadPosRankSum=2.433;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:2,290:292:99:6221,717,0 chrIV 385243 . T C 5215.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=22.38;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5215,591,0 chrIV 385363 . T G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=3.912;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.317;QD=21.20;ReadPosRankSum=1.660;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4071,465,0 chrIV 385396 . C G 4209.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.05;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4209,477,0 chrIV 385411 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.9288;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.93;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4452,486,0 chrIV 385506 . T C 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=2.857;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.057;QD=23.29;ReadPosRankSum=2.424;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,191:195:99:4541,522,0 chrIV 385531 . G A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.0995;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.07;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4776,543,0 chrIV 385579 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=325.1798;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=-1.261;QD=20.46;ReadPosRankSum=1.676;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3786,432,0 chrIV 385750 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=21.73;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3433,396,0 chrIV 385790 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=22.21;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2965,327,0 chrIV 385792 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=22.64;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2931,324,0 chrIV 385898 . T A 1619 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.4494;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=20.24;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1652,192,0 chrIV 385913 . G A 1490 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=20.99;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1523,177,0 chrIV 385919 . G A 1352 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.18;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1385,162,0 chrIV 385922 . A T 1403 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;MQRankSum=-0.276;QD=20.33;ReadPosRankSum=1.632;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1436,168,0 chrIV 385961 . G A 588 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=16.33;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:621,69,0 chrIV 385989 . C G 562 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=14.05;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:595,69,0 chrIV 386001 . A G 494 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=12.67;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:527,63,0 chrIV 386025 . C T 538 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=10.35;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:63:571,63,0 chrIV 386031 . G T 629 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=11.23;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:75:662,75,0 chrIV 386116 . T G 482 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;QD=8.17;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:63:515,63,0 chrIV 386141 . G A 276 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.39;MQ0=0;QD=6.13;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:39:309,39,0 chrIV 386149 . G A 201 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=28.5340;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=0;QD=5.03;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:30:234,30,0 chrIV 386380 . G C 1818 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=20.66;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1851,207,0 chrIV 386402 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=0.56;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:86:9:80,9,0 chrIV 386438 . A C 1170 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;MQRankSum=-1.565;QD=14.10;ReadPosRankSum=1.690;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1203,138,0 chrIV 386441 . C G 1080 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=8.3634;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=13.85;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1113,126,0 chrIV 386445 . A G 1065 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=0.688;QD=14.59;ReadPosRankSum=1.685;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1098,123,0 chrIV 386446 . G A 1082 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=15.03;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1115,123,0 chrIV 386469 . T A 1091 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=13.81;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1124,126,0 chrIV 386490 . A G 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=-1.294;QD=15.15;ReadPosRankSum=1.692;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1351,153,0 chrIV 386499 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=13.98;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1291,144,0 chrIV 386506 . G A 1367 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=15.90;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1400,156,0 chrIV 386517 . T A 1411 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=14.85;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1444,159,0 chrIV 386523 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=15.72;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1495,168,0 chrIV 386534 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=17.22;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1600,171,0 chrIV 386535 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=16.95;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1575,171,0 chrIV 386613 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=16.10;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1321,144,0 chrIV 386635 . G C 1306 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=17.18;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1339,153,0 chrIV 386657 . G A 1068 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=16.69;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1101,120,0 chrIV 386702 . G C 1014 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=21.12;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1047,123,0 chrIV 386719 . A T 794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=8.926;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;MQRankSum=-0.575;QD=19.37;ReadPosRankSum=2.209;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:90:827,90,0 chrIV 386762 . G A 639 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=14.86;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:75:672,75,0 chrIV 386776 . T C 734 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=42.2327;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=15.62;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:767,87,0 chrIV 386891 . A G 2221 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=22.90;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2254,258,0 chrIV 386911 . G T 2519 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.3227;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=22.90;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2552,282,0 chrIV 386946 . T A 1357 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=16.15;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1390,162,0 chrIV 386947 . T A 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;MQRankSum=-1.569;QD=15.92;ReadPosRankSum=1.651;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1386,162,0 chrIV 386975 . C G 1375 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=16.57;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1408,165,0 chrIV 387000 . G A 1064 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=13.14;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1097,123,0 chrIV 387021 . T C 888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=82;Dels=0.00;FS=2.936;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;MQRankSum=-1.789;QD=10.83;ReadPosRankSum=2.390;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:921,105,0 chrIV 387026 . C A 971 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=11.70;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1004,114,0 chrIV 387041 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=12.66;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1324,153,0 chrIV 387066 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-0.912;QD=13.61;ReadPosRankSum=1.702;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1585,180,0 chrIV 387149 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=16.11;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1725,198,0 chrIV 387157 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=1.567;QD=17.14;ReadPosRankSum=0.181;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1833,210,0 chrIV 387371 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.89;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2397,261,0 chrIV 387713 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-1.207;QD=14.40;ReadPosRankSum=1.690;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2409,279,0 chrIV 387772 . A G 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=8.758;HaplotypeScore=14.8095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.125;QD=22.64;ReadPosRankSum=2.424;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4347,492,0 chrIV 387828 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.2809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.743;QD=22.49;ReadPosRankSum=0.104;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4004,421,0 chrIV 388049 . C G 3380.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.2941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3380,381,0 chrIV 388221 . G T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2520;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.75;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3942,444,0 chrIV 388305 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=147;Dels=0.00;FS=2.949;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.534;QD=21.43;ReadPosRankSum=2.399;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3183,363,0 chrIV 388338 . G T 2978 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.06;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3011,339,0 chrIV 388426 . G C 2840 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.88;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2873,321,0 chrIV 388449 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=19.19;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2701,291,0 chrIV 388587 . T C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.597;QD=20.86;ReadPosRankSum=1.645;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2515,285,0 chrIV 388815 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=4.013;HaplotypeScore=9.8567;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.383;QD=20.25;ReadPosRankSum=1.706;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2686,303,0 chrIV 388871 . A G 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.589;QD=17.10;ReadPosRankSum=1.703;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2102,237,0 chrIV 388942 . A T 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.109;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.977;QD=21.52;ReadPosRankSum=1.654;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2895,324,0 chrIV 389012 . A T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.6368;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.39;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3392,375,0 chrIV 389045 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7767;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.10;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3469,390,0 chrIV 389375 . T G 5773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=248;Dels=0.00;FS=3.414;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.732;QD=23.28;ReadPosRankSum=1.676;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5773,645,0 chrIV 390027 . C A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.91;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3467,375,0 chrIV 390097 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.31;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3516,378,0 chrIV 390111 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=173;Dels=0.00;FS=3.014;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-1.464;QD=17.15;ReadPosRankSum=2.407;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3000,342,0 chrIV 390120 . A T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.67;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3541,381,0 chrIV 390566 . C T 75.51 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.04;FS=0.000;HaplotypeScore=38.6805;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=0.53;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,137:137:12:108,12,0 chrIV 390684 . A T 2847 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=24.33;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2880,315,0 chrIV 390744 . A G 4924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.414;QD=21.50;ReadPosRankSum=1.717;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4924,576,0 chrIV 390756 . T A 5354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=245;Dels=0.00;FS=3.460;HaplotypeScore=10.4382;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.937;QD=21.85;ReadPosRankSum=1.689;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5354,585,0 chrIV 391128 . T C 1810 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.29;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1843,210,0 chrIV 391149 . G C 1647 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.61;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1680,192,0 chrIV 391193 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.71;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2352,267,0 chrIV 391561 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5060;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.08;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3102,342,0 chrIV 391712 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=4.168;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.658;QD=22.37;ReadPosRankSum=1.708;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3209,366,0 chrIV 392799 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4147,462,0 chrIV 392938 . C A 4697.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.84;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4697,510,0 chrIV 393344 . G A 5158.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.33;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5158,561,0 chrIV 393421 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.727;QD=17.82;ReadPosRankSum=1.088;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:3761,425,0 chrIV 393423 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=208;Dels=0.00;FS=2.856;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-1.623;QD=19.28;ReadPosRankSum=2.426;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4011,450,0 chrIV 393445 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.9831;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.56;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:3899,432,0 chrIV 393574 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=195;Dels=0.00;FS=4.365;HaplotypeScore=18.1574;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.536;QD=19.15;ReadPosRankSum=1.714;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:3734,420,0 chrIV 393619 . A G 4565.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.13;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4565,519,0 chrIV 393651 . T C 5141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=234;Dels=0.00;FS=3.896;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.795;QD=21.97;ReadPosRankSum=1.687;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5141,582,0 chrIV 394039 . A G 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.917;HaplotypeScore=120.7254;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.381;QD=16.96;ReadPosRankSum=1.707;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2408,270,0 chrIV 394249 . C T 7572.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=16.7540;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.35;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,310:311:99:7572,846,0 chrIV 394339 . T C 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=230;Dels=0.00;FS=2.977;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.763;QD=21.69;ReadPosRankSum=2.396;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4988,579,0 chrIV 394555 . C T 5264.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.9120;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.71;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5264,582,0 chrIV 394723 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.392;QD=23.27;ReadPosRankSum=1.647;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3840,444,0 chrIV 394789 . C T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.86;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3629,408,0 chrIV 394798 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.408;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.931;QD=19.96;ReadPosRankSum=1.710;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3226,372,0 chrIV 395086 . T C 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=201;Dels=0.00;FS=3.538;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.680;QD=20.50;ReadPosRankSum=1.646;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4120,483,0 chrIV 395767 . A T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3272,357,0 chrIV 396458 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9206;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.65;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3405,381,0 chrIV 396610 . C A 2603 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.66;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2636,285,0 chrIV 396700 . A G 2379 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.51;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2412,276,0 chrIV 397411 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=8.064;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.389;QD=23.89;ReadPosRankSum=2.332;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3488,399,0 chrIV 398408 . C G 2314 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5757;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2347,264,0 chrIV 398523 . T G 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=119;Dels=0.00;FS=3.010;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.444;QD=21.13;ReadPosRankSum=2.408;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2547,291,0 chrIV 398799 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=4.251;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.829;QD=22.95;ReadPosRankSum=1.690;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3809,423,0 chrIV 399193 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.229;DP=130;Dels=0.00;FS=9.179;HaplotypeScore=8.2015;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.112;QD=20.42;ReadPosRankSum=3.377;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:4,126:130:99:2688,306,0 chrIV 399202 . C T 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=3.001;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.629;QD=21.06;ReadPosRankSum=2.187;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2792,306,0 chrIV 399570 . A G 4685.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.01;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4685,522,0 chrIV 400197 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=192;Dels=0.00;FS=8.589;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.252;QD=23.64;ReadPosRankSum=2.230;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:4538,516,0 chrIV 400242 . A T 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.109;QD=24.07;ReadPosRankSum=1.709;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3611,393,0 chrIV 400290 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.96;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3272,360,0 chrIV 400395 . G A 5072.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.64;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5072,555,0 chrIV 400404 . G C 4680.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.99;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4680,534,0 chrIV 400491 . T C 2763 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.76;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2796,321,0 chrIV 400709 . T A 681 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.46;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:78:714,78,0 chrIV 401117 . A G 2627 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2660,303,0 chrIV 401696 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.77;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2947,330,0 chrIV 401726 . A G 3135 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.39;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3168,360,0 chrIV 402050 . T C 2479 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.01;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2512,282,0 chrIV 402371 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.621;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.710;QD=21.75;ReadPosRankSum=1.619;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2686,318,0 chrIV 402402 . T G 2562 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.47;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2595,294,0 chrIV 402856 . C A 5350.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.57;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5350,585,0 chrIV 403331 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.49;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2615,300,0 chrIV 403346 . A G 2189 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.90;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2222,252,0 chrIV 403347 . A G 2211 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.57;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2244,255,0 chrIV 403449 . T C 2058 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.66;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2091,234,0 chrIV 403476 . A G 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=99;Dels=0.00;FS=2.822;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.584;QD=20.87;ReadPosRankSum=2.400;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2099,240,0 chrIV 403543 . T A 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.780;QD=18.89;ReadPosRankSum=1.656;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1771,201,0 chrIV 403544 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.70;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1958,213,0 chrIV 403580 . A G 2030 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.31;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2063,234,0 chrIV 403679 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.133;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.017;QD=23.66;ReadPosRankSum=1.698;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2446,276,0 chrIV 403830 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=150;Dels=0.00;FS=7.599;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.507;QD=22.58;ReadPosRankSum=2.367;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3387,393,0 chrIV 403952 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=143;Dels=0.00;FS=7.974;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.216;QD=22.07;ReadPosRankSum=2.415;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3189,366,0 chrIV 404304 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.29;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3328,363,0 chrIV 404459 . A T 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2055;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.805;QD=22.78;ReadPosRankSum=1.596;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2926,330,0 chrIV 404690 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.85;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3277,366,0 chrIV 404702 . T C 3039 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.53;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3072,348,0 chrIV 404730 . A C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7294;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.143;QD=19.34;ReadPosRankSum=1.685;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2895,342,0 chrIV 404818 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.88;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3988,441,0 chrIV 404941 . A G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=139;Dels=0.00;FS=3.009;HaplotypeScore=9.7329;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.701;QD=20.64;ReadPosRankSum=2.396;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2902,342,0 chrIV 404996 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.5540;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.78;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2797,312,0 chrIV 405116 . C A 1855 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.61;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1888,204,0 chrIV 405143 . A G 1596 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.95;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1629,186,0 chrIV 405482 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=3.540;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.505;QD=21.58;ReadPosRankSum=1.647;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2666,306,0 chrIV 405794 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=212;Dels=0.00;FS=8.390;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.828;QD=18.35;ReadPosRankSum=2.403;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:3890,441,0 chrIV 405797 . C T 4035.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.51;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4035,453,0 chrIV 405938 . A G 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.8332;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.204;QD=22.95;ReadPosRankSum=1.702;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5256,600,0 chrIV 406099 . C T 4557.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.49;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4557,501,0 chrIV 406118 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.3755;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.42;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4263,474,0 chrIV 406151 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.27;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3595,390,0 chrIV 406262 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3788,435,0 chrIV 406301 . A G 3074 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.12;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3107,351,0 chrIV 406385 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.3859;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.82;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3561,405,0 chrIV 406667 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=164;Dels=0.00;FS=6.052;HaplotypeScore=11.9867;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.509;QD=22.77;ReadPosRankSum=2.932;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:99:3734,426,0 chrIV 406814 . T C 4022.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.8159;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.22;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4022,453,0 chrIV 406901 . A T 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=120;Dels=0.00;FS=2.779;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.625;QD=23.36;ReadPosRankSum=2.368;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2836,303,0 chrIV 407050 . A G 2886 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.86;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2919,330,0 chrIV 407223 . G C 2851 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.44;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2884,330,0 chrIV 407286 . C G 4392.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.7093;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=23.49;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4392,492,0 chrIV 408038 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.95;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1306,144,0 chrIV 408065 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.52;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1263,144,0 chrIV 408095 . T A 1290 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.16;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1323,147,0 chrIV 408128 . T A 1237 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.03;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1270,141,0 chrIV 408131 . C T 1192 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=17.53;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1225,132,0 chrIV 408221 . A G 1830 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=21.03;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1863,210,0 chrIV 408374 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=25.26;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3536,381,0 chrIV 408416 . T A 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.558;DP=169;Dels=0.00;FS=10.972;HaplotypeScore=26.8929;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.313;QD=20.97;ReadPosRankSum=3.753;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:5,164:169:99:3544,381,0 chrIV 408706 . T C 5801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=276;Dels=0.00;FS=4.851;HaplotypeScore=16.0682;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.568;QD=21.02;ReadPosRankSum=1.719;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:5801,660,0 chrIV 408757 . A G 5575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.4585;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.105;QD=21.95;ReadPosRankSum=1.718;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5575,627,0 chrIV 408811 . A T 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.297;QD=21.85;ReadPosRankSum=2.305;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3343,378,0 chrIV 408812 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.365;QD=21.93;ReadPosRankSum=-0.952;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3356,375,0 chrIV 408877 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.0177;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.68;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3470,378,0 chrIV 408894 . T G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.57;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3344,378,0 chrIV 410728 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.04;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2942,327,0 chrIV 411048 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.25;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3371,363,0 chrIV 411189 . G C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.62;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,169:175:99:3609,408,0 chrIV 411448 . G T 3215 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.0669;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.85;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3248,366,0 chrIV 411544 . T C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=167;Dels=0.01;FS=3.349;HaplotypeScore=37.9433;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.606;QD=15.68;ReadPosRankSum=1.689;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,159:165:99:2652,297,0 chrIV 411666 . T C 2021 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.7220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2054,237,0 chrIV 412382 . C T 8263.01 filter AC=2;AF=1.00;AN=2;DP=413;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.01;SB=-4.125e+03 GT:AD:DP:GQ:PL 1/1:0,412:413:99:8263,915,0 chrIV 412388 . C T 7994.01 filter AC=2;AF=1.00;AN=2;DP=402;Dels=0.00;FS=0.000;HaplotypeScore=6.0271;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.89;SB=-4.208e+03 GT:AD:DP:GQ:PL 1/1:0,400:401:99:7994,894,0 chrIV 412574 . A G 8017.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=398;Dels=0.00;FS=8.238;HaplotypeScore=25.9337;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.024;QD=20.14;ReadPosRankSum=3.440;SB=-4.122e+03 GT:AD:DP:GQ:PL 1/1:4,393:398:99:8017,921,0 chrIV 413313 . T C 1599 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=24.23;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1632,189,0 chrIV 413375 . C A 1634 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.68;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1667,180,0 chrIV 413443 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.71;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2523,279,0 chrIV 413544 . T A 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.285;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7101;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.838;QD=18.38;ReadPosRankSum=1.322;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1742,198,0 chrIV 413545 . A G 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.010;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7101;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.794;QD=19.09;ReadPosRankSum=1.299;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1866,207,0 chrIV 413595 . T C 1970 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.70;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2003,228,0 chrIV 413674 . G T 2083 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.22;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2116,231,0 chrIV 413881 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.01;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1860,201,0 chrIV 413995 . T C 2768 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2801,327,0 chrIV 414381 . A G 3038 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.18;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3071,351,0 chrIV 414726 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2403,276,0 chrIV 415078 . T C 1065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.589;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.283;QD=22.66;ReadPosRankSum=2.851;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:3,44:47:99:1098,123,0 chrIV 415408 . T C 4469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=214;Dels=0.00;FS=15.653;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.024;QD=20.88;ReadPosRankSum=3.394;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:4,208:214:99:4469,507,0 chrIV 415430 . T C 5228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=244;Dels=0.00;FS=7.183;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.393;QD=21.43;ReadPosRankSum=2.409;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5228,597,0 chrIV 416304 . A G 4939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=212;Dels=0.00;FS=3.918;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.111;QD=23.30;ReadPosRankSum=1.716;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4939,552,0 chrIV 416511 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.7768;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.93;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4561,489,0 chrIV 416544 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=19.2730;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.46;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3866,432,0 chrIV 416574 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=3.672;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.880;QD=20.46;ReadPosRankSum=1.714;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3907,459,0 chrIV 416628 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.69;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3492,387,0 chrIV 416675 . A G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.481;QD=21.05;ReadPosRankSum=1.676;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2643,303,0 chrIV 416754 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.37;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2091,225,0 chrIV 416856 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.41;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2229,243,0 chrIV 416872 . A C 1963 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.57;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1996,231,0 chrIV 417015 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.705;QD=22.75;ReadPosRankSum=1.623;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2922,336,0 chrIV 417206 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.98;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4320,483,0 chrIV 417375 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3794,405,0 chrIV 417459 . C A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.31;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3889,426,0 chrIV 417819 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.100;DP=191;Dels=0.00;FS=10.373;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.694;QD=21.80;ReadPosRankSum=4.055;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:6,184:191:99:4163,480,0 chrIV 418067 . C T 5368.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.65;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5368,603,0 chrIV 418485 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.234;QD=23.87;ReadPosRankSum=1.694;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4320,486,0 chrIV 418803 . C T 4705.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4705,522,0 chrIV 419073 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=176;Dels=0.00;FS=3.061;HaplotypeScore=15.8075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.319;QD=20.28;ReadPosRankSum=1.672;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3570,405,0 chrIV 419911 . G A 4154.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4697;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.58;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4154,453,0 chrIV 420270 . C T 5400.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.5869;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.88;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:5400,591,0 chrIV 420417 . T C 4904.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.60;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4904,555,0 chrIV 420492 . G A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.6368;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.78;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4693,507,0 chrIV 420571 . C G 4711.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.54;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4711,525,0 chrIV 420755 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.9667;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.155;QD=22.91;ReadPosRankSum=1.637;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3345,369,0 chrIV 420793 . C A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.02;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3507,387,0 chrIV 420945 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=166;Dels=0.00;FS=2.985;HaplotypeScore=13.1005;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.206;QD=21.57;ReadPosRankSum=2.405;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3581,408,0 chrIV 421109 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.56;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3911,435,0 chrIV 421380 . T C 2629 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3273;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.28;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2662,303,0 chrIV 421455 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=21.39;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2386,270,0 chrIV 421556 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.53;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2186,240,0 chrIV 421586 . T A 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.365;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.611;QD=21.43;ReadPosRankSum=1.698;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2219,237,0 chrIV 421598 . C A 2643 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.21;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2676,291,0 chrIV 421989 . C G 3046 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.31;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3079,351,0 chrIV 421990 . G T 3017 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.39;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3050,345,0 chrIV 422005 . A T 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.203;DP=164;Dels=0.00;FS=12.863;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-1.114;QD=21.02;ReadPosRankSum=3.353;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3447,378,0 chrIV 422276 . C A 2822 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=21.22;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2855,315,0 chrIV 422278 . G A 2730 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=20.37;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2763,312,0 chrIV 422280 . C G 2677 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=19.54;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2710,312,0 chrIV 422318 . G T 2710 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.22;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2743,303,0 chrIV 422530 . A C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;MQRankSum=-0.014;QD=22.34;ReadPosRankSum=1.703;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2759,309,0 chrIV 422574 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=19.31;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2003,219,0 chrIV 422580 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=73.3186;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=17.78;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1918,210,0 chrIV 422595 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=78.3083;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=14.32;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1322,144,0 chrIV 422647 . G C 2446 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.39;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2479,279,0 chrIV 422672 . A G 3070 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=13.6303;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.03;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3103,363,0 chrIV 422745 . G C 2617 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=121.3117;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=19.98;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2650,303,0 chrIV 422794 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=16.64;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1947,213,0 chrIV 423046 . A G 4742.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.06;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4742,543,0 chrIV 423061 . G A 5304.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.4415;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.47;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5304,594,0 chrIV 423118 . G C 5238.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.04;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:5238,588,0 chrIV 423202 . A G 6887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=313;Dels=0.00;FS=5.092;HaplotypeScore=16.1700;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.932;QD=22.00;ReadPosRankSum=3.075;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:4,307:313:99:6887,779,0 chrIV 423268 . A G 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=268;Dels=0.00;FS=3.027;HaplotypeScore=16.3539;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.041;QD=19.97;ReadPosRankSum=2.431;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:5351,624,0 chrIV 423322 . A G 4810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=230;Dels=0.00;FS=5.047;HaplotypeScore=13.0791;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.633;QD=20.91;ReadPosRankSum=3.384;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:4,224:230:99:4810,552,0 chrIV 423385 . T G 5622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.355;DP=260;Dels=0.00;FS=2.726;HaplotypeScore=18.7481;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.801;QD=21.62;ReadPosRankSum=1.748;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:2,257:260:99:5622,617,0 chrIV 423430 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.9397;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=19.04;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4246,480,0 chrIV 423595 . C G 3995.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.23;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3995,462,0 chrIV 423759 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;QD=22.73;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3660,393,0 chrIV 423847 . G T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.3904;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.36;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4041,447,0 chrIV 423869 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.29;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3726,405,0 chrIV 423908 . T C 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=149;Dels=0.00;FS=6.741;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.178;QD=19.11;ReadPosRankSum=2.365;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,143:149:99:2881,330,0 chrIV 423912 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.929;QD=19.51;ReadPosRankSum=1.707;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2745,312,0 chrIV 424131 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.34;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3396,390,0 chrIV 424226 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.32;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2890,312,0 chrIV 424517 . A G 2781 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.75;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2814,324,0 chrIV 424526 . A C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=130;Dels=0.00;FS=3.043;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.085;QD=19.99;ReadPosRankSum=2.336;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2632,300,0 chrIV 424905 . C A 4666.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.33;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4666,525,0 chrIV 425036 . T C 4650.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.2428;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.02;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4650,531,0 chrIV 425098 . G C 4233.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.88;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4233,471,0 chrIV 425213 . T G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.4009;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.495;QD=21.80;ReadPosRankSum=1.713;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,181:186:99:4054,462,0 chrIV 425304 . T A 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.525;QD=22.37;ReadPosRankSum=1.676;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4116,465,0 chrIV 426131 . A G 4358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=193;Dels=0.00;FS=9.518;HaplotypeScore=14.7918;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.639;QD=22.58;ReadPosRankSum=2.964;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:4358,501,0 chrIV 426326 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.0467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3711,417,0 chrIV 426362 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.889;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.878;QD=21.05;ReadPosRankSum=1.659;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3043,351,0 chrIV 426781 . A T 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.859;QD=21.61;ReadPosRankSum=1.676;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2691,294,0 chrIV 426944 . A G 1161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.267;QD=22.33;ReadPosRankSum=1.666;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1194,132,0 chrIV 426951 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.26;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1160,129,0 chrIV 427169 . C T 834 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:96:867,96,0 chrIV 427330 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.47;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3617,396,0 chrIV 427801 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.05;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3880,447,0 chrIV 427852 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=3.436;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.409;QD=21.83;ReadPosRankSum=1.640;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3274,372,0 chrIV 427996 . A T 5632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=238;Dels=0.00;FS=4.371;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.441;QD=23.66;ReadPosRankSum=1.688;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5632,624,0 chrIV 428558 . T C 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=2.917;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.920;QD=22.06;ReadPosRankSum=2.242;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2129,249,0 chrIV 428676 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.52;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2623,297,0 chrIV 428725 . T A 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.135;QD=22.97;ReadPosRankSum=1.702;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2698,297,0 chrIV 428786 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=17.3592;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.85;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2393,270,0 chrIV 428851 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.20;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2841,321,0 chrIV 428899 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=22.02;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3248,351,0 chrIV 428900 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.95;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3112,351,0 chrIV 428929 . C T 2451 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4022;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.00;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2484,279,0 chrIV 428969 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.16;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2248,252,0 chrIV 428983 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.72;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2602,279,0 chrIV 429057 . A G 4154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.986;QD=22.95;ReadPosRankSum=1.713;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4154,462,0 chrIV 429969 . A G 4979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=230;Dels=0.00;FS=3.623;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.988;QD=21.65;ReadPosRankSum=1.686;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:4979,579,0 chrIV 430281 . C T 6268.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=16.6708;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=24.48;SB=-3.283e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6268,678,0 chrIV 430599 . A T 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.553;QD=22.40;ReadPosRankSum=1.708;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3191,363,0 chrIV 430665 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3474,381,0 chrIV 430899 . A G 2550 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2583,288,0 chrIV 430932 . G T 2337 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2370,261,0 chrIV 431674 . G C 3700.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.02;FS=0.000;HaplotypeScore=38.0264;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.00;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3700,423,0 chrIV 431897 . A T 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=204;Dels=0.00;FS=9.085;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.572;QD=23.63;ReadPosRankSum=2.413;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4820,516,0 chrIV 431927 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.58;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3313,357,0 chrIV 431930 . A T 3192 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.0698;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.00;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3225,360,0 chrIV 432487 . G C 2639 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.2694;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.99;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2672,306,0 chrIV 432803 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.0403;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=24.26;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4027,456,0 chrIV 432926 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0606;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.77;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2493,282,0 chrIV 432992 . G A 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.256;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9679;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.278;QD=21.45;ReadPosRankSum=0.225;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2843,295,0 chrIV 433063 . A G 1121 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=14.95;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1154,129,0 chrIV 433121 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=19.63;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1505,174,0 chrIV 433146 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=21.14;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1936,210,0 chrIV 433160 . A C 1851 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=18.51;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1884,216,0 chrIV 433175 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=16.56;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1507,159,0 chrIV 433233 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=13.5883;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.04;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2077,228,0 chrIV 433297 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.25;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2614,285,0 chrIV 433317 . C A 2444 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8572;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.02;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2477,285,0 chrIV 433376 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=18.88;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2034,222,0 chrIV 433396 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=17.45;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2144,246,0 chrIV 433401 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.19;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2165,234,0 chrIV 433434 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.43;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3200,363,0 chrIV 433470 . C G 4029.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.63;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4029,450,0 chrIV 433591 . T A 7941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=22.1373;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.639;QD=25.05;ReadPosRankSum=1.710;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,316:317:99:7941,844,0 chrIV 433703 . T C 5838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=258;Dels=0.00;FS=7.601;HaplotypeScore=12.3957;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=1;MQRankSum=-0.407;QD=22.63;ReadPosRankSum=2.411;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:2,255:258:99:5838,639,0 chrIV 433742 . T C 7221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=355;Dels=0.00;FS=4.747;HaplotypeScore=6.5224;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=1;MQRankSum=1.063;QD=20.34;ReadPosRankSum=1.683;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:1,352:355:99:7221,825,0 chrIV 433744 . A C 7345.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=6.7619;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=1;MQRankSum=-0.265;QD=20.23;ReadPosRankSum=1.674;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:1,359:363:99:7345,825,0 chrIV 433889 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.87;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3521,408,0 chrIV 434124 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=21.29;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1672,189,0 chrIV 434129 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=19.74;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1612,180,0 chrIV 434153 . T C 1261 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=19.40;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1294,147,0 chrIV 434178 . G A 1040 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=20.39;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1073,114,0 chrIV 434368 . G C 1816 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=22.42;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1849,210,0 chrIV 434371 . T A 1745 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;QD=23.90;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1778,189,0 chrIV 434379 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;QD=23.47;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1394,150,0 chrIV 434921 . C T 600 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=20.69;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:66:633,66,0 chrIV 434947 . A G 1339 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=21.25;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1372,156,0 chrIV 435004 . T C 2118 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;QD=23.27;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2151,243,0 chrIV 435072 . T C 391 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=20.58;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:51:424,51,0 chrIV 435113 . C T 155.06 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=11.08;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:21:188,21,0 chrIV 435139 . C T 367 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=16.68;SB=-6.792e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:45:400,45,0 chrIV 435202 . A C 923 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=20.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:956,108,0 chrIV 435213 . T A 776 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=17.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:93:809,93,0 chrIV 435214 . T C 802 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=17.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:96:835,96,0 chrIV 435275 . G A 266 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;QD=4.43;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:33:299,33,0 chrIV 435323 . A T 1260 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=16.58;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1293,144,0 chrIV 435397 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=6.0347;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.50;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2238,252,0 chrIV 435518 . A T 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.110;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.220;QD=22.47;ReadPosRankSum=1.614;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2010,216,0 chrIV 435680 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=5.133;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.247;QD=23.46;ReadPosRankSum=1.686;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3519,402,0 chrIV 435820 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.93;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3311,378,0 chrIV 435908 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.50;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2718,297,0 chrIV 435990 . A G 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=104;Dels=0.00;FS=2.784;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=-1.716;QD=16.97;ReadPosRankSum=2.308;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1798,207,0 chrIV 435991 . T G 1809 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=17.07;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1842,210,0 chrIV 436011 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.54;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1720,189,0 chrIV 436026 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.98;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1851,210,0 chrIV 436162 . A C 2168 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=20.07;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2201,249,0 chrIV 436177 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.0405;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=16.85;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1651,183,0 chrIV 436257 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=12.44;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1078,117,0 chrIV 436270 . G C 1234 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=13.56;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1267,144,0 chrIV 436482 . T A 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.079;QD=24.55;ReadPosRankSum=1.687;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3756,405,0 chrIV 436543 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.61;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3301,360,0 chrIV 436565 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.017;QD=21.68;ReadPosRankSum=1.677;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2765,324,0 chrIV 436884 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.71;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2464,276,0 chrIV 436994 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=0.104;QD=24.08;ReadPosRankSum=1.697;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2441,273,0 chrIV 437035 . C A 1576 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=22.20;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1609,174,0 chrIV 437054 . G T 1446 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=22.25;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1479,159,0 chrIV 437065 . A T 1260 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=20.32;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1293,147,0 chrIV 437081 . T C 1251 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=20.85;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1284,141,0 chrIV 437130 . A G 1437 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=18.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1470,168,0 chrIV 437637 . C T 745 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=11.46;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:87:778,87,0 chrIV 437695 . T G 1315 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.55;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:64:99:1348,162,0 chrIV 437717 . T C 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1055;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.122;QD=22.17;ReadPosRankSum=1.683;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1607,180,0 chrIV 437759 . T C 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-1.142;QD=22.39;ReadPosRankSum=1.693;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2003,225,0 chrIV 437881 . C T 2018 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.98;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2051,234,0 chrIV 437894 . G T 2067 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.47;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2100,237,0 chrIV 437896 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.05;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2058,222,0 chrIV 437955 . A G 2760 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.23;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2793,318,0 chrIV 438319 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4105,453,0 chrIV 438682 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4374,498,0 chrIV 438856 . A G 4296.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.3860;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.48;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4296,495,0 chrIV 439063 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.87;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3139,357,0 chrIV 439479 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.34;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2044,237,0 chrIV 439746 . A T 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.610;QD=21.20;ReadPosRankSum=1.699;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2259,255,0 chrIV 439768 . T C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=3.263;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.425;QD=21.32;ReadPosRankSum=1.667;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2314,261,0 chrIV 439851 . C G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2792;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.49;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3306,369,0 chrIV 440205 . C G 4754.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4754,549,0 chrIV 440556 . C A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.1467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3899,432,0 chrIV 440689 . T C 4539.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.5017;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.92;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4539,519,0 chrIV 440889 . T C 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=3.894;HaplotypeScore=8.6565;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.680;QD=22.86;ReadPosRankSum=1.715;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4640,525,0 chrIV 441071 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.877;QD=20.28;ReadPosRankSum=1.710;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3196,366,0 chrIV 441206 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=185;Dels=0.00;FS=5.253;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.565;QD=19.92;ReadPosRankSum=1.713;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,180:185:99:3685,438,0 chrIV 441228 . T C 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.0704;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.310;QD=21.73;ReadPosRankSum=1.699;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4519,519,0 chrIV 441305 . G A 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=187;Dels=0.00;FS=2.062;HaplotypeScore=560.1681;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=1.293;QD=16.27;ReadPosRankSum=3.269;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:4,179:187:99:3075,345,0 chrIV 441348 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=216;Dels=0.00;FS=2.753;HaplotypeScore=5.9000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=0.394;QD=17.66;ReadPosRankSum=2.187;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:3814,432,0 chrIV 441367 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=17.60;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:3908,426,0 chrIV 441465 . A G 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=244;Dels=0.00;FS=6.017;HaplotypeScore=18.3387;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-2.473;QD=19.08;ReadPosRankSum=2.946;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:3,239:244:99:4656,534,0 chrIV 441629 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.3243;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.99;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4097,462,0 chrIV 441636 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=207;Dels=0.00;FS=6.127;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.662;QD=18.76;ReadPosRankSum=2.378;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:3883,441,0 chrIV 441650 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.46;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4195,453,0 chrIV 441721 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.19;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3876,432,0 chrIV 441738 . C T 4155.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.87;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4155,450,0 chrIV 441971 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.5655;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.32;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2826,309,0 chrIV 442320 . C G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=7.2984;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.28;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3431,387,0 chrIV 442344 . G A 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.0457;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.064;QD=22.63;ReadPosRankSum=0.619;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3224,351,0 chrIV 442638 . G T 1164 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1197,132,0 chrIV 442746 . T C 1628 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.94;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1661,192,0 chrIV 442782 . A G 1762 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.80;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1795,204,0 chrIV 442788 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.088;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.745;QD=17.07;ReadPosRankSum=3.340;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:4,101:105:99:1825,207,0 chrIV 443218 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.9248;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.45;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3689,414,0 chrIV 443292 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=155;Dels=0.00;FS=5.251;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.073;QD=21.83;ReadPosRankSum=3.402;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3384,378,0 chrIV 443491 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.28;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2261,243,0 chrIV 443547 . A G 1918 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1951,222,0 chrIV 443658 . G C 1420 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.11;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1453,165,0 chrIV 443786 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.78;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2220,243,0 chrIV 443924 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.87;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3018,333,0 chrIV 444372 . A G 493 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.61;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:60:526,60,0 chrIV 444518 . T C 352 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-0.844;QD=11.35;ReadPosRankSum=2.292;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,29:31:45:385,45,0 chrIV 444524 . G A 381 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=9.07;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,37:40:45:414,45,0 chrIV 444540 . T C 897 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-0.392;QD=12.81;ReadPosRankSum=3.327;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,66:70:99:930,105,0 chrIV 444672 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.56;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,118:122:99:3029,324,0 chrIV 445249 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.72;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4793,540,0 chrIV 445472 . G A 6084.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6084,669,0 chrIV 445581 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.06;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3921,450,0 chrIV 445817 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.98;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4196,459,0 chrIV 445993 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.69;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3840,444,0 chrIV 446016 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.0017;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.35;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3900,426,0 chrIV 446066 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.552;QD=20.72;ReadPosRankSum=2.385;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3917,450,0 chrIV 446421 . A G 1520 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.00;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1553,177,0 chrIV 446498 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.20;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1165,132,0 chrIV 446662 . A G 2038 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.7170;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.16;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2071,231,0 chrIV 446954 . G A 853 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.87;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:886,99,0 chrIV 447337 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.89;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3123,336,0 chrIV 447357 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.75;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2817,303,0 chrIV 447952 . G C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.3117;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.21;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3394,381,0 chrIV 448175 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.07;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4414,495,0 chrIV 448388 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.0482;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.664;QD=22.23;ReadPosRankSum=1.664;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4580,531,0 chrIV 448634 . G C 3435.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3159;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.47;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3435,387,0 chrIV 449024 . A G 2727 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2760,324,0 chrIV 449449 . A G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.506;QD=24.20;ReadPosRankSum=1.701;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2768,312,0 chrIV 449471 . G A 2253 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=23.72;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2286,255,0 chrIV 449477 . C G 2083 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=22.89;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2116,243,0 chrIV 449562 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=22.90;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1430,156,0 chrIV 449566 . G C 1299 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=23.20;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1332,150,0 chrIV 449578 . T C 1226 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=22.70;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1259,141,0 chrIV 449579 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.22;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1255,144,0 chrIV 449650 . G T 882 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:44:99:915,105,0 chrIV 449709 . A G 689 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=22.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:84:722,84,0 chrIV 449722 . A T 458 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.069;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=22.7470;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;MQRankSum=-0.529;QD=17.62;ReadPosRankSum=2.261;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:2,24:26:63:491,63,0 chrIV 449742 . T C 401 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=23.59;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:51:434,51,0 chrIV 449770 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.715;DP=11;Dels=0.00;FS=5.643;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=0.382;QD=2.16;ReadPosRankSum=-0.715;SB=1.24 GT:AD:DP:GQ:PL 1/1:3,8:11:6:55,6,0 chrIV 449823 . C T 800 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:93:833,93,0 chrIV 449844 . T A 880 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=17.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:913,99,0 chrIV 449988 . G A 948 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=25.62;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:981,105,0 chrIV 450131 . C T 1010 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1043,114,0 chrIV 450139 . C T 870 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:903,102,0 chrIV 450232 . G A 1600 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1633,180,0 chrIV 450779 . G A 4548.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=24.8338;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.08;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4548,498,0 chrIV 450949 . G A 5136.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.7585;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.86;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5136,582,0 chrIV 451075 . A G 6262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=275;Dels=0.00;FS=3.339;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.024;QD=22.77;ReadPosRankSum=1.681;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:6262,693,0 chrIV 451441 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3841,432,0 chrIV 451799 . T A 2677 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.69;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2710,297,0 chrIV 451867 . C T 2257 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.3378;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.35;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2290,255,0 chrIV 452236 . T C 4851.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.4178;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.21;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4851,543,0 chrIV 452728 . T C 1920 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.33;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1953,231,0 chrIV 452771 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.64;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1301,138,0 chrIV 452826 . C G 1757 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.43;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1790,201,0 chrIV 453092 . T C 2847 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.461;QD=24.76;ReadPosRankSum=1.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2880,333,0 chrIV 453755 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.837;QD=22.71;ReadPosRankSum=1.588;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2758,309,0 chrIV 453903 . T C 2545 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.14;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2578,291,0 chrIV 453908 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.59;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2710,294,0 chrIV 454193 . G C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.49;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3823,438,0 chrIV 454502 . C T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4194,474,0 chrIV 455316 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3146,339,0 chrIV 455455 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.58;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2863,312,0 chrIV 455545 . A T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.7355;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.51;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4313,474,0 chrIV 455618 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=151;Dels=0.00;FS=8.022;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.272;QD=23.96;ReadPosRankSum=3.748;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:5,145:151:99:3618,405,0 chrIV 455729 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.38;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3530,381,0 chrIV 456033 . C T 4162.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8383;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4162,465,0 chrIV 456103 . T A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.06;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3420,384,0 chrIV 456208 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4034,444,0 chrIV 456600 . G T 2769 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.15;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2802,315,0 chrIV 457403 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=197;Dels=0.00;FS=16.212;HaplotypeScore=16.7640;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.011;QD=20.99;ReadPosRankSum=2.587;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:4,192:197:99:4136,465,0 chrIV 457671 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.95;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3626,393,0 chrIV 457815 . G C 2991 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.01;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3024,339,0 chrIV 457907 . T C 2877 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.40;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2910,339,0 chrIV 458036 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.15;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3389,366,0 chrIV 458045 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.28;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3075,342,0 chrIV 458153 . A T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.76;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3277,372,0 chrIV 458209 . C T 4149.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3670;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.55;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4149,453,0 chrIV 458401 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.1366;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.79;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3304,354,0 chrIV 458419 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.90;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2878,318,0 chrIV 458653 . T C 5788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.7764;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.045;QD=23.72;ReadPosRankSum=2.359;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5788,666,0 chrIV 458785 . C T 6553.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=18.0653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-3.518e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6553,735,0 chrIV 459304 . G A 4582.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4582,495,0 chrIV 459514 . G T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.57;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3342,369,0 chrIV 459567 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3559,384,0 chrIV 459793 . A G 3108 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3141,360,0 chrIV 459924 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.163;HaplotypeScore=9.9085;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.920;QD=23.02;ReadPosRankSum=1.708;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3361,381,0 chrIV 460188 . C T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.70;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3721,405,0 chrIV 460219 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=4.081;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.686;QD=23.84;ReadPosRankSum=1.709;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3623,414,0 chrIV 460279 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.57;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3686,399,0 chrIV 460660 . C G 2866 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.61;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2899,333,0 chrIV 460852 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.600;QD=22.87;ReadPosRankSum=1.666;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3590,417,0 chrIV 461027 . C T 5303.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.67;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5303,573,0 chrIV 461088 . G A 5239.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.39;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5239,556,0 chrIV 461149 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.14;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3579,387,0 chrIV 461156 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.08;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3345,378,0 chrIV 461425 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.1738;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.20;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1992,225,0 chrIV 461469 . G C 1856 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1889,216,0 chrIV 461615 . T C 2359 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.2984;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.84;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2392,273,0 chrIV 461656 . A G 2703 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.10;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2736,315,0 chrIV 462097 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.73;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3980,453,0 chrIV 462632 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=2.983;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.503;QD=20.49;ReadPosRankSum=2.367;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3086,351,0 chrIV 462638 . T C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.225;DP=157;Dels=0.00;FS=8.653;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.017;QD=18.61;ReadPosRankSum=3.370;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:2954,339,0 chrIV 462986 . T C 6086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=19.8660;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-1.524;QD=22.62;ReadPosRankSum=1.719;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:1,265:269:99:6086,690,0 chrIV 463089 . G A 4639.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4639,507,0 chrIV 463263 . C A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.98;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4067,438,0 chrIV 463889 . C A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3787,414,0 chrIV 464138 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=18.1939;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.50;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3150,357,0 chrIV 464487 . C G 4259.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.5851;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.07;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4259,483,0 chrIV 464571 . T C 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=196;Dels=0.00;FS=11.773;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.913;QD=21.59;ReadPosRankSum=2.892;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4231,474,0 chrIV 465051 . T A 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=-0.549;QD=16.76;ReadPosRankSum=1.711;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2732,300,0 chrIV 465056 . C G 2522 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;QD=16.06;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2555,288,0 chrIV 465343 . T A 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.491;QD=21.95;ReadPosRankSum=1.692;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3798,411,0 chrIV 465458 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=5.889;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.732;QD=22.93;ReadPosRankSum=1.690;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3738,446,0 chrIV 465495 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.72;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4301,474,0 chrIV 465563 . T A 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=208;Dels=0.00;FS=7.112;HaplotypeScore=16.0193;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.033;QD=22.09;ReadPosRankSum=2.379;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4594,519,0 chrIV 465662 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=174.7709;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.65;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4439,495,0 chrIV 465690 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.39;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3605,390,0 chrIV 465882 . G A 4420.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3169;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.39;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4420,483,0 chrIV 466362 . T C 6894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=333;Dels=0.00;FS=8.718;HaplotypeScore=26.6749;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.011;QD=20.70;ReadPosRankSum=2.435;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:2,330:333:99:6894,809,0 chrIV 466410 . T C 7303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=342;Dels=0.00;FS=13.461;HaplotypeScore=16.5943;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.368;QD=21.35;ReadPosRankSum=2.938;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:3,338:342:99:7303,828,0 chrIV 466737 . C T 5616.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5616,612,0 chrIV 467328 . T C 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=3.666;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.761;QD=23.55;ReadPosRankSum=1.699;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4921,561,0 chrIV 467442 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.19;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3653,396,0 chrIV 467595 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.79;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3464,399,0 chrIV 467790 . C T 5478.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.4603;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.41;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5478,606,0 chrIV 468168 . G A 6940.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=16.6658;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.53;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,305:308:99:6940,777,0 chrIV 468858 . G C 4239.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4239,480,0 chrIV 469065 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3426,381,0 chrIV 469194 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.89;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2857,309,0 chrIV 469200 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.79;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2735,297,0 chrIV 469322 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=131;Dels=0.00;FS=2.740;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.554;QD=23.28;ReadPosRankSum=2.393;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3083,342,0 chrIV 469779 . A T 4737.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.34;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4737,516,0 chrIV 470607 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.845;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.205;QD=22.56;ReadPosRankSum=2.398;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2176,246,0 chrIV 470651 . T A 2185 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.76;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2218,246,0 chrIV 470731 . A T 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.023;QD=21.83;ReadPosRankSum=1.690;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1845,201,0 chrIV 470733 . A G 1796 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.38;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1829,207,0 chrIV 471230 . C G 2504 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.59;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2537,282,0 chrIV 471249 . T C 2529 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.99;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2562,291,0 chrIV 471701 . T C 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;DP=91;Dels=0.00;FS=7.653;HaplotypeScore=74.5926;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=1.692;QD=15.77;ReadPosRankSum=2.125;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1468,168,0 chrIV 471948 . T A 1034 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=17.559;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=1.672;QD=18.14;ReadPosRankSum=1.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1067,117,0 chrIV 472533 . T C 1488.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.323;DP=301;Dels=0.00;FS=3.383;HaplotypeScore=5.1379;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=70;MQRankSum=0.813;QD=4.94;ReadPosRankSum=-1.783;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,150:301:99:1518,0,1527 chrIV 472536 . C T 1529.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.921;DP=312;Dels=0.00;FS=3.504;HaplotypeScore=11.1897;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=70;MQRankSum=1.024;QD=4.90;ReadPosRankSum=-2.184;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,160:312:99:1559,0,1459 chrIV 472584 . G A 906.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;DP=282;Dels=0.00;FS=5.041;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=91;MQRankSum=-3.001;QD=3.21;ReadPosRankSum=0.503;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:113,169:282:99:936,0,793 chrIV 472593 . C T 949.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.478;DP=262;Dels=0.00;FS=9.094;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=21.03;MQ0=76;MQRankSum=-1.605;QD=3.62;ReadPosRankSum=0.889;SB=-2.710e+02 GT:AD:DP:GQ:PL 0/1:93,168:262:99:979,0,552 chrIV 472644 . C T 2976.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;DP=261;Dels=0.00;FS=73.492;HaplotypeScore=8.7398;MLEAC=1;MLEAF=0.500;MQ=36.59;MQ0=44;MQRankSum=3.696;QD=11.40;ReadPosRankSum=3.948;SB=-1.799e+03 GT:AD:DP:GQ:PL 0/1:66,195:261:99:3006,0,183 chrIV 472671 . T C 386.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.279;DP=308;Dels=0.00;FS=133.131;HaplotypeScore=18.9540;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=13;MQRankSum=-9.342;QD=1.25;ReadPosRankSum=0.545;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:233,75:308:99:416,0,4425 chrIV 472701 . T C 1010.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.089;DP=368;Dels=0.00;FS=202.083;HaplotypeScore=18.5221;MLEAC=1;MLEAF=0.500;MQ=41.14;MQ0=11;MQRankSum=-10.134;QD=2.74;ReadPosRankSum=-1.416;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:244,122:368:99:1040,0,4488 chrIV 472918 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=2;QD=22.43;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3477,381,0 chrIV 473492 . C T 4966.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.9349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4966,564,0 chrIV 474073 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=25.20;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:4083,438,0 chrIV 474233 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=209;Dels=0.00;FS=3.517;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.041;QD=16.33;ReadPosRankSum=1.682;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:3412,384,0 chrIV 474241 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.20;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3354,357,0 chrIV 474265 . G A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=16.67;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:3884,441,0 chrIV 474320 . A G 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=260;Dels=0.00;FS=6.278;HaplotypeScore=5.8797;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-1.084;QD=18.39;ReadPosRankSum=2.402;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:2,255:260:99:4782,540,0 chrIV 474321 . A G 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=263;Dels=0.00;FS=3.094;HaplotypeScore=5.8797;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.175;QD=19.08;ReadPosRankSum=1.666;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:1,260:263:99:5017,552,0 chrIV 474625 . T G 4750.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.51;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4750,546,0 chrIV 474628 . A G 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.121;QD=22.70;ReadPosRankSum=2.334;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4836,555,0 chrIV 475191 . A C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.866;QD=19.35;ReadPosRankSum=1.668;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2142,243,0 chrIV 475206 . A G 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=3.121;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.237;QD=18.31;ReadPosRankSum=1.674;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2212,249,0 chrIV 475233 . T C 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.5006;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.509;QD=18.23;ReadPosRankSum=1.681;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2512,285,0 chrIV 475394 . C A 3067 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.89;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3100,330,0 chrIV 475405 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.77;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2899,333,0 chrIV 475475 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=191;Dels=0.00;FS=2.189;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.667;QD=21.88;ReadPosRankSum=2.804;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4179,468,0 chrIV 475500 . T A 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.216;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.542;QD=21.97;ReadPosRankSum=0.281;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4131,430,0 chrIV 475608 . T C 3157 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.33;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3190,354,0 chrIV 475724 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=146;Dels=0.00;FS=5.731;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.118;QD=23.15;ReadPosRankSum=2.882;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3380,381,0 chrIV 475878 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8825;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.17;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2494,282,0 chrIV 476333 . T A 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350;DP=66;Dels=0.00;FS=3.122;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=33.84;MQ0=0;MQRankSum=-1.444;QD=0.73;ReadPosRankSum=4.371;SB=-9.282e+01 GT:AD:DP:GQ:PL 0/1:8,58:66:62:78,0,62 chrIV 476334 . G A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DP=67;Dels=0.00;FS=3.567;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=0;MQRankSum=-1.624;QD=0.39;ReadPosRankSum=-4.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,7:67:56:56,0,101 chrIV 476489 . C G 544 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=17.00;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:66:577,66,0 chrIV 476602 . A G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=95;Dels=0.00;FS=2.608;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=1.756;QD=19.88;ReadPosRankSum=2.926;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1922,216,0 chrIV 476684 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=25.13;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2295,249,0 chrIV 476875 . G C 4663.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.69;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4663,531,0 chrIV 476888 . C G 4840.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.5208;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.68;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:4840,549,0 chrIV 477034 . A G 4552.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.78;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4552,525,0 chrIV 477238 . T C 4839.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.20;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4839,564,0 chrIV 477367 . G A 4547.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.20;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4547,504,0 chrIV 477394 . C G 4464.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.10;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4464,507,0 chrIV 477479 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=148;Dels=0.00;FS=4.162;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.400;QD=22.34;ReadPosRankSum=1.685;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3307,375,0 chrIV 477585 . A G 2702 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.33;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2735,309,0 chrIV 477804 . A C 2814 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.81;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2847,327,0 chrIV 477857 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.46;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3693,411,0 chrIV 478019 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;DP=154;Dels=0.00;FS=3.183;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.292;QD=22.14;ReadPosRankSum=0.630;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3410,367,0 chrIV 478092 . G C 3145 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.0145;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.97;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3178,366,0 chrIV 478105 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.8047;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.345;QD=21.66;ReadPosRankSum=1.237;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3509,384,0 chrIV 478317 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.73;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2836,315,0 chrIV 478517 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.01;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3409,369,0 chrIV 478977 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.448;QD=21.57;ReadPosRankSum=1.679;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4271,486,0 chrIV 479106 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3500,381,0 chrIV 479694 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.39;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2442,276,0 chrIV 479796 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.46;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3223,366,0 chrIV 479946 . T C 2754 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.02;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2787,324,0 chrIV 480076 . G C 4206.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.35;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4206,474,0 chrIV 480096 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.2384;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.38;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4252,474,0 chrIV 480135 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.65;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3534,402,0 chrIV 480222 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.96;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3152,345,0 chrIV 480231 . T C 2798 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.04;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2831,315,0 chrIV 480345 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.578;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.397;QD=22.69;ReadPosRankSum=1.687;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3539,405,0 chrIV 480436 . G C 2866 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3160;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.05;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2899,330,0 chrIV 480465 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.60;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2863,318,0 chrIV 480624 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.5327;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.81;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3751,411,0 chrIV 480726 . G A 5154.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.7515;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=24.90;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5154,558,0 chrIV 480818 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=6.531;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.434;QD=21.71;ReadPosRankSum=2.420;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3625,408,0 chrIV 480846 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.96;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4195,450,0 chrIV 480887 . A G 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=223;Dels=0.00;FS=2.998;HaplotypeScore=9.4097;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.228;QD=18.83;ReadPosRankSum=2.394;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4200,468,0 chrIV 480895 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-1.233;QD=17.40;ReadPosRankSum=2.934;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:4002,447,0 chrIV 480972 . C A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.58;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4150,459,0 chrIV 480975 . G A 4037.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.04;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4037,456,0 chrIV 481399 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=205;Dels=0.00;FS=3.032;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.523;QD=20.28;ReadPosRankSum=2.341;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4158,468,0 chrIV 481400 . C T 4287.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.81;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4287,474,0 chrIV 481806 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.13;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3804,420,0 chrIV 481950 . T A 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=146;Dels=0.00;FS=3.020;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.109;QD=21.51;ReadPosRankSum=2.416;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3173,357,0 chrIV 482050 . C T 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.573;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.351;QD=14.15;ReadPosRankSum=-0.983;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2155,225,0 chrIV 482580 . T A 2648 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2681,291,0 chrIV 482955 . T C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.608;DP=132;Dels=0.00;FS=5.726;HaplotypeScore=14.1324;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=2.316;QD=21.54;ReadPosRankSum=2.916;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2876,330,0 chrIV 482997 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1376;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.76;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3106,366,0 chrIV 483119 . A G 2856 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.31;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2889,330,0 chrIV 483136 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=130;Dels=0.00;FS=6.767;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.162;QD=20.95;ReadPosRankSum=2.392;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2756,318,0 chrIV 483171 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.67;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3089,333,0 chrIV 483225 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.09;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2964,336,0 chrIV 483341 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=116;Dels=0.00;FS=10.595;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.017;QD=20.84;ReadPosRankSum=2.940;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2451,276,0 chrIV 483420 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.29;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3279,366,0 chrIV 483422 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.37;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3291,360,0 chrIV 483501 . A G 2296 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.87;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2329,270,0 chrIV 483545 . T G 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=0.951;QD=20.31;ReadPosRankSum=1.654;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2775,327,0 chrIV 483565 . G A 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.617;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.334;QD=18.98;ReadPosRankSum=1.431;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3088,342,0 chrIV 483566 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.395;QD=18.18;ReadPosRankSum=1.688;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2924,336,0 chrIV 483717 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.58;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3454,381,0 chrIV 483735 . A G 2852 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.76;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2885,330,0 chrIV 483738 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=18.97;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2935,327,0 chrIV 483836 . T G 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-1.112;QD=20.07;ReadPosRankSum=1.704;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2522,297,0 chrIV 483837 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=8.229;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=1.730;QD=20.77;ReadPosRankSum=2.410;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2608,294,0 chrIV 484026 . A G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.182;QD=19.43;ReadPosRankSum=2.386;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2267,255,0 chrIV 484028 . A G 2226 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.87;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2259,258,0 chrIV 484051 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=18.27;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2280,255,0 chrIV 484184 . G C 4650.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4650,531,0 chrIV 484658 . G C 3782.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.70;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3782,438,0 chrIV 484955 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.14;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4398,501,0 chrIV 484964 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.72;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4127,456,0 chrIV 484994 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.55;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3965,426,0 chrIV 485105 . G T 5650.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.8733;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.35;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5650,627,0 chrIV 485379 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=173;Dels=0.00;FS=6.201;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.366;QD=22.02;ReadPosRankSum=2.378;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:3809,444,0 chrIV 485434 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.4273;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.12;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4172,456,0 chrIV 485593 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=149;Dels=0.00;FS=5.715;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;MQRankSum=-0.612;QD=21.19;ReadPosRankSum=2.912;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3190,357,0 chrIV 485723 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.9141;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.89;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3719,411,0 chrIV 485776 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.99;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3147,354,0 chrIV 486079 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=170;Dels=0.00;FS=5.797;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.509;QD=20.49;ReadPosRankSum=2.911;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3484,408,0 chrIV 486788 . A G 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=0;MQRankSum=1.909;QD=0.24;ReadPosRankSum=-3.122;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:96,4:100:34:54,0,34 chrIV 487279 . A G 4650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=209;Dels=0.00;FS=2.973;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.454;QD=22.25;ReadPosRankSum=2.426;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4650,519,0 chrIV 487826 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.93;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3334,354,0 chrIV 487844 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.512;QD=20.07;ReadPosRankSum=1.708;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2903,327,0 chrIV 488021 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.3898;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.02;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3026,327,0 chrIV 488069 . C G 3389.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.04;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3389,384,0 chrIV 488205 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.8678;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.65;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4210,471,0 chrIV 488795 . T A 2476 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.65;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2509,279,0 chrIV 488796 . C A 2594 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.09;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2627,282,0 chrIV 488892 . T G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=128;Dels=0.00;FS=3.600;HaplotypeScore=5.8044;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=1.072;QD=20.71;ReadPosRankSum=1.705;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2684,303,0 chrIV 488906 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.89;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2357,255,0 chrIV 489061 . C G 4779.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.54;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4779,537,0 chrIV 489254 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.46;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3012,324,0 chrIV 489283 . T C 2121 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.42;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2154,246,0 chrIV 489353 . T C 820 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=19.52;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:853,99,0 chrIV 489433 . C T 566 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=30.3179;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=1;QD=13.16;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:66:599,66,0 chrIV 489543 . T C 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=-0.666;QD=20.46;ReadPosRankSum=1.643;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1629,186,0 chrIV 489556 . C T 1799 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.16;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1832,201,0 chrIV 489816 . A G 3105 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.84;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3138,357,0 chrIV 491450 . T A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.72;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4079,441,0 chrIV 491656 . T C 3127 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.34;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3160,366,0 chrIV 491687 . T C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.067;QD=22.61;ReadPosRankSum=1.678;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2950,336,0 chrIV 491804 . T A 3024 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.08;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3057,336,0 chrIV 491809 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.39;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3100,348,0 chrIV 492469 . G C 2169 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.10;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2202,255,0 chrIV 492686 . T G 5225.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.08;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5225,576,0 chrIV 493273 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=142;Dels=0.00;FS=16.006;HaplotypeScore=9.2144;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.129;QD=21.35;ReadPosRankSum=3.763;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:5,137:142:99:3064,328,0 chrIV 493522 . G A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.26;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4605,510,0 chrIV 493876 . T C 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=126;Dels=0.00;FS=4.014;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.137;QD=19.09;ReadPosRankSum=1.677;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2438,276,0 chrIV 494200 . T A 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.417;QD=24.06;ReadPosRankSum=1.712;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4235,468,0 chrIV 494625 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.903;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-1.671;QD=20.01;ReadPosRankSum=1.640;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2314,258,0 chrIV 494633 . T A 2128 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.35;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2161,234,0 chrIV 494669 . C T 2133 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.39;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2166,246,0 chrIV 494797 . A G 3065 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.05;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3098,348,0 chrIV 495303 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.60;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3842,423,0 chrIV 495483 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=2.835;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.042;QD=23.22;ReadPosRankSum=2.335;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3970,450,0 chrIV 495492 . A T 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=4.067;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-0.551;QD=21.63;ReadPosRankSum=1.673;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3806,423,0 chrIV 495642 . G T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.74;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4297,489,0 chrIV 495870 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.74;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2383,264,0 chrIV 496113 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.09;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3396,372,0 chrIV 496558 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2767,300,0 chrIV 497105 . A G 5113.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5113,573,0 chrIV 497154 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=185;Dels=0.00;FS=6.187;HaplotypeScore=10.2984;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=2.078;QD=20.24;ReadPosRankSum=2.423;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3745,438,0 chrIV 497463 . T A 2765 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2798,300,0 chrIV 498138 . A G 2930 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2963,333,0 chrIV 498305 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.13;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3354,366,0 chrIV 498490 . G T 4596.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.4312;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.19;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4596,501,0 chrIV 498744 . C T 6570.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=22.6868;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.97;SB=-3.670e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:6570,715,0 chrIV 498888 . A G 7724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=329;Dels=0.00;FS=6.221;HaplotypeScore=12.4039;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.101;QD=23.48;ReadPosRankSum=2.405;SB=-4.047e+03 GT:AD:DP:GQ:PL 1/1:2,327:329:99:7724,858,0 chrIV 498927 . G C 5927.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.37;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5927,684,0 chrIV 498945 . G A 4993.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.80;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4993,555,0 chrIV 498984 . G A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=19.8667;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.03;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4846,531,0 chrIV 499110 . G T 5213.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=23.1471;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.72;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5213,576,0 chrIV 499185 . T C 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=189;Dels=0.00;FS=3.021;HaplotypeScore=20.5612;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.268;QD=22.48;ReadPosRankSum=2.371;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4248,477,0 chrIV 499324 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=174;Dels=0.00;FS=2.983;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;MQRankSum=-2.095;QD=21.54;ReadPosRankSum=2.421;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3748,420,0 chrIV 499571 . C T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.5937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3740,408,0 chrIV 499648 . C A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3324,357,0 chrIV 499794 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3264,369,0 chrIV 500512 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3646,399,0 chrIV 500601 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.2540;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.174;QD=22.41;ReadPosRankSum=1.681;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4595,537,0 chrIV 500847 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=221;Dels=0.00;FS=5.679;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.537;QD=19.13;ReadPosRankSum=2.959;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:3,216:221:99:4228,489,0 chrIV 501514 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3156,357,0 chrIV 501556 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=146;Dels=0.00;FS=7.647;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.401;QD=22.45;ReadPosRankSum=2.381;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3277,372,0 chrIV 501667 . A C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5449;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.36;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3341,375,0 chrIV 502245 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.22;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4000,435,0 chrIV 502277 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=4.381;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.774;QD=20.63;ReadPosRankSum=1.671;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3527,405,0 chrIV 502877 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.558;QD=23.13;ReadPosRankSum=1.713;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4163,474,0 chrIV 503212 . G C 3208 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.08;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3241,366,0 chrIV 503223 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.193;QD=21.74;ReadPosRankSum=1.655;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2968,330,0 chrIV 503249 . C A 2513 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.24;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2546,276,0 chrIV 503375 . T C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=130;Dels=0.00;FS=6.193;HaplotypeScore=16.4477;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.220;QD=17.45;ReadPosRankSum=2.334;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2301,264,0 chrIV 503400 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.9212;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=16.43;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2563,282,0 chrIV 503551 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.23;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3610,402,0 chrIV 503626 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.86;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3265,372,0 chrIV 503628 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.51;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3313,378,0 chrIV 503688 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.78;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3004,327,0 chrIV 503759 . C G 2906 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2939,333,0 chrIV 503885 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.03;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1315,150,0 chrIV 504204 . C T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.76;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4847,534,0 chrIV 505041 . C A 2021 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.84;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2054,228,0 chrIV 505206 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=17.98;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1004,114,0 chrIV 505262 . T A 278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-1.386;QD=9.27;ReadPosRankSum=1.617;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:36:311,36,0 chrIV 505264 . T G 354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;MQRankSum=-1.733;QD=11.42;ReadPosRankSum=1.621;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:45:387,45,0 chrIV 505274 . T A 588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=8.6791;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;MQRankSum=-0.549;QD=14.34;ReadPosRankSum=1.648;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,40:41:69:621,69,0 chrIV 505369 . A G 1124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;DP=52;Dels=0.00;FS=11.182;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=2.213;QD=21.62;ReadPosRankSum=1.737;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1157,132,0 chrIV 505399 . T A 1105 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.111;QD=23.51;ReadPosRankSum=1.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1138,120,0 chrIV 505504 . T C 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DP=112;Dels=0.00;FS=9.633;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.342;QD=21.79;ReadPosRankSum=2.937;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2474,282,0 chrIV 505577 . A C 2724 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=21.79;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2757,315,0 chrIV 505795 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=21.52;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2766,297,0 chrIV 505808 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=3.022;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;MQRankSum=-1.546;QD=18.60;ReadPosRankSum=2.387;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2209,249,0 chrIV 505821 . T A 1998 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=15.98;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2031,219,0 chrIV 505842 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=14.63;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1716,192,0 chrIV 505847 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=14.71;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1769,192,0 chrIV 505864 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=15.57;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:1917,213,0 chrIV 506042 . T G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.9421;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.251;QD=22.92;ReadPosRankSum=1.706;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3058,342,0 chrIV 506222 . A G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.126;QD=20.26;ReadPosRankSum=1.701;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2262,258,0 chrIV 506286 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.93;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1528,168,0 chrIV 506476 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.68;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1273,141,0 chrIV 506483 . A G 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=75;Dels=0.00;FS=25.117;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.837;QD=18.75;ReadPosRankSum=3.706;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:5,70:75:99:1439,162,0 chrIV 506606 . A G 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=62;Dels=0.00;FS=10.778;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-2.045;QD=21.45;ReadPosRankSum=2.288;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:99:1363,156,0 chrIV 506865 . T G 2102 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.13;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2135,243,0 chrIV 507055 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2854,309,0 chrIV 507130 . G C 2841 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.49;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2874,321,0 chrIV 507490 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.05;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2679,309,0 chrIV 507495 . A G 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=129;Dels=0.00;FS=6.688;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.963;QD=19.78;ReadPosRankSum=2.392;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2585,291,0 chrIV 507535 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.45;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2821,312,0 chrIV 507634 . C G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.54;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3338,384,0 chrIV 507747 . C G 1604 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.68;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1637,186,0 chrIV 508191 . C T 2529 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.86;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2562,288,0 chrIV 508845 . G A 7878.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.45;SB=-3.960e+03 GT:AD:DP:GQ:PL 1/1:0,335:336:99:7878,844,0 chrIV 509186 . A T 2774 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.70;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2807,306,0 chrIV 509407 . G T 1428 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7670;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.00;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1461,156,0 chrIV 509488 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=46.5024;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=17.85;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:997,111,0 chrIV 509559 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.95;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1262,144,0 chrIV 509667 . G C 1346 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.71;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1379,153,0 chrIV 509676 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.28;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1351,150,0 chrIV 509797 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.34;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2951,321,0 chrIV 509831 . T C 2976 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.00;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3009,342,0 chrIV 510085 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.36;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2358,258,0 chrIV 510199 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2065,228,0 chrIV 510697 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.17;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3230,345,0 chrIV 511129 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=19.55;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3064,345,0 chrIV 511385 . A G 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=158;Dels=0.00;FS=6.620;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.008;QD=20.80;ReadPosRankSum=2.387;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3286,372,0 chrIV 511400 . T G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.637;QD=18.34;ReadPosRankSum=1.712;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3225,366,0 chrIV 511405 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.58;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3344,363,0 chrIV 511483 . C T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9407;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.52;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3961,426,0 chrIV 511492 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=187;Dels=0.00;FS=6.234;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.693;QD=20.86;ReadPosRankSum=2.423;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3900,444,0 chrIV 511717 . C A 4755.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.31;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4755,519,0 chrIV 511770 . G C 4390.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.81;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4390,501,0 chrIV 511815 . C T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.8668;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.60;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4450,495,0 chrIV 512370 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=2.911;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.280;QD=22.23;ReadPosRankSum=2.406;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3802,426,0 chrIV 512392 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=179;Dels=0.00;FS=2.912;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=-1.001;QD=18.52;ReadPosRankSum=2.422;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3315,375,0 chrIV 512393 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=18.92;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3406,375,0 chrIV 512455 . G T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.3794;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=17.52;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3503,384,0 chrIV 512478 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=18.22;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3316,381,0 chrIV 512484 . G C 3528.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=18.77;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3528,396,0 chrIV 512521 . C A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=19.79;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3345,366,0 chrIV 512535 . C G 2967 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=18.20;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3000,342,0 chrIV 512542 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.3316;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=17.66;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2805,309,0 chrIV 512603 . A G 3144 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=20.28;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3177,369,0 chrIV 512607 . A G 3120 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=20.13;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3153,369,0 chrIV 512625 . A T 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-1.460;QD=21.32;ReadPosRankSum=2.384;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3209,357,0 chrIV 512664 . A G 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=125;Dels=0.00;FS=2.456;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=0.585;QD=20.63;ReadPosRankSum=2.862;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2612,303,0 chrIV 512728 . A T 2317 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=21.26;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2350,261,0 chrIV 512755 . T C 1875 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=21.31;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1908,216,0 chrIV 512796 . T C 967 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=20.15;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1000,117,0 chrIV 512797 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;QD=21.68;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1052,117,0 chrIV 512817 . T A 799 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=22.83;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:93:832,93,0 chrIV 512840 . T C 438 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=0;QD=16.22;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,25:27:57:471,57,0 chrIV 512842 . A T 444 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;MQRankSum=-1.733;QD=17.76;ReadPosRankSum=1.595;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:54:477,54,0 chrIV 512849 . T A 437 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.109;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=0.129;QD=15.07;ReadPosRankSum=1.936;SB=-2.396e+01 GT:AD:DP:GQ:PL 1/1:2,27:29:54:470,54,0 chrIV 512850 . T A 436 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.936;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=-1.248;QD=15.03;ReadPosRankSum=1.764;SB=-3.300e+01 GT:AD:DP:GQ:PL 1/1:2,27:29:54:469,54,0 chrIV 512878 . C T 780 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;QD=15.60;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:93:813,93,0 chrIV 512903 . A T 796 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=16.58;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:90:829,90,0 chrIV 512908 . C T 795 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=16.56;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:90:828,90,0 chrIV 512921 . A G 678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.55;MQ0=0;MQRankSum=-0.808;QD=15.07;ReadPosRankSum=1.655;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,44:45:78:711,78,0 chrIV 512937 . G A 514 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=14.69;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:547,60,0 chrIV 513059 . A T 1253 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=26.66;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1286,138,0 chrIV 513065 . C A 1163 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=26.43;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1196,126,0 chrIV 513172 . T A 590 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.85;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:69:623,69,0 chrIV 513176 . C T 739 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.11;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:84:772,84,0 chrIV 513182 . T C 781 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:93:814,93,0 chrIV 513193 . A C 842 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:875,99,0 chrIV 513196 . G A 881 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:914,99,0 chrIV 513211 . T G 965 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:998,111,0 chrIV 513222 . G T 1087 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1120,120,0 chrIV 513763 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.11;MQ0=15;QD=2.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,3:18:9:79,9,0 chrIV 519633 . A T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;DP=17;Dels=0.00;FS=6.892;HaplotypeScore=2.9800;MLEAC=1;MLEAF=0.500;MQ=27.25;MQ0=5;MQRankSum=1.294;QD=1.35;ReadPosRankSum=0.185;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,3:17:53:53,0,162 chrIV 519637 . T C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;DP=16;Dels=0.00;FS=2.533;HaplotypeScore=5.9063;MLEAC=1;MLEAF=0.500;MQ=28.08;MQ0=4;MQRankSum=-2.793;QD=1.01;ReadPosRankSum=-2.141;SB=-9.006e+00 GT:AD:DP:GQ:PL 0/1:11,5:16:46:46,0,164 chrIV 519649 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=4.2205;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=2;MQRankSum=0.922;QD=1.27;ReadPosRankSum=0.922;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,5:11:6:45,6,0 chrIV 519658 . A C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrIV 519836 . T A 97.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=10.81;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:130,15,0 chrIV 519843 . C T 80.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=10.06;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:113,12,0 chrIV 519882 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrIV 519884 . C A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrIV 519890 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrIV 519895 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=4.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,3:4:6:51,6,0 chrIV 519898 . T G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=5.45;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,3:4:6:53,6,0 chrIV 519913 . T G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=3.18;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:6:47,6,0 chrIV 519923 . A C 226 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=7.29;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:30:259,30,0 chrIV 519954 . A G 921 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=15.61;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:954,111,0 chrIV 519960 . A G 1029 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=16.33;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1062,120,0 chrIV 520004 . G A 1737 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=21.99;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1770,195,0 chrIV 520031 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=18.54;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1164,135,0 chrIV 520078 . A G 361 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=26.5350;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=12.45;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:45:394,45,0 chrIV 520115 . T C 477 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=16.45;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:57:510,57,0 chrIV 520210 . C A 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5492;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;MQRankSum=1.102;QD=21.00;ReadPosRankSum=0.984;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1881,192,0 chrIV 520212 . A G 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.297;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;MQRankSum=-0.156;QD=20.40;ReadPosRankSum=1.827;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:2,85:89:99:1849,197,0 chrIV 520246 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=20.60;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1207,138,0 chrIV 520247 . G A 1163 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=20.40;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1196,138,0 chrIV 520309 . G A 181.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=2;QD=12.93;SB=-2.697e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:24:214,24,0 chrIV 520315 . G A 167.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.99;MQ0=2;QD=16.71;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:200,21,0 chrIV 520322 . T A 170.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=2;QD=15.46;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:203,21,0 chrIV 520334 . T C 155.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=2;QD=14.10;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:188,21,0 chrIV 520378 . A G 95.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=13.61;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:128,15,0 chrIV 520390 . T A 71.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=0;QD=11.92;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:104,12,0 chrIV 520395 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=0;QD=4.46;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrIV 520559 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.8990;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=18.59;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,81:90:99:1706,207,0 chrIV 520575 . A G 572.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=0.300;QD=4.37;ReadPosRankSum=0.777;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:90,39:131:99:602,0,1646 chrIV 520595 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.5676;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=1;QD=22.85;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3382,407,0 chrIV 520636 . A G 930.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.379;DP=130;Dels=0.00;FS=27.166;HaplotypeScore=4.9168;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=1;MQRankSum=-5.282;QD=7.15;ReadPosRankSum=4.730;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:73,57:130:99:960,0,1325 chrIV 520645 . T G 2036 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=1;QD=20.57;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2069,257,0 chrIV 520656 . T C 615.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=60;Dels=0.00;FS=1.127;HaplotypeScore=6.5397;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=1;MQRankSum=-1.163;QD=10.25;ReadPosRankSum=4.026;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:23,35:60:99:645,0,222 chrIV 520657 . G A 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;DP=56;Dels=0.00;FS=1.187;HaplotypeScore=4.9623;MLEAC=1;MLEAF=0.500;MQ=23.17;MQ0=1;MQRankSum=-0.269;QD=2.59;ReadPosRankSum=-3.785;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,21:56:99:175,0,642 chrIV 520671 . C T 464 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.33;MQ0=1;QD=21.09;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:497,60,0 chrIV 520713 . G T 22.15 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=0;QD=4.43;SB=16.84 GT:AD:DP:GQ:PL 1/1:0,3:5:6:53,6,0 chrIV 520752 . T A 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=12.7944;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=0;MQRankSum=-0.026;QD=2.41;ReadPosRankSum=-0.592;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,11:46:99:141,0,540 chrIV 520760 . T C 112.98 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=56.0586;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=0;MQRankSum=-0.277;QD=1.95;ReadPosRankSum=-2.280;SB=-3.988e+00 GT:AD:DP:GQ:PL 0/1:2,56:58:3:142,0,3 chrIV 520763 . A C 173.12 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.374;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=52.1269;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=0;MQRankSum=0.323;QD=2.66;ReadPosRankSum=-2.146;SB=-2.135e+00 GT:AD:DP:GQ:PL 1/1:2,63:65:5:204,5,0 chrIV 520783 . C T 646.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9295;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;MQRankSum=0.673;QD=12.44;ReadPosRankSum=0.816;SB=-6.491e-01 GT:AD:DP:GQ:PL 1/1:6,46:52:9:679,9,0 chrIV 520784 . A C 651.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.131;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9295;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;MQRankSum=0.272;QD=12.53;ReadPosRankSum=0.673;SB=-3.527e-01 GT:AD:DP:GQ:PL 1/1:6,46:52:12:684,12,0 chrIV 520788 . G A 808 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.022;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=17.3162;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;MQRankSum=-0.167;QD=15.54;ReadPosRankSum=1.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,50:52:80:841,80,0 chrIV 520792 . C T 683 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.065;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=17.3162;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=0;MQRankSum=-0.248;QD=15.18;ReadPosRankSum=2.341;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:2,43:45:67:716,67,0 chrIV 520794 . G A 696 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=0;QD=15.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:90:729,90,0 chrIV 520796 . A C 155.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.5680;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=0;MQRankSum=-1.100;QD=3.44;ReadPosRankSum=5.618;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,18:45:99:185,0,361 chrIV 520799 . A C 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.6119;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=0;MQRankSum=-1.850;QD=3.50;ReadPosRankSum=5.574;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,18:44:99:184,0,358 chrIV 520801 . T C 246 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=13.67;SB=-8.666e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:36:279,36,0 chrIV 520839 . C T 278 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;QD=4.63;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:36:311,36,0 chrIV 520841 . T A 327 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;QD=5.36;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:39:360,39,0 chrIV 520893 . A G 1281 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=19.41;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1314,147,0 chrIV 520940 . G A 1234 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=24.20;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1267,135,0 chrIV 520944 . G T 1124 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=21.21;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1157,132,0 chrIV 521102 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=79.2711;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=23.10;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2043,222,0 chrIV 521218 . C A 1305 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;QD=14.18;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1338,150,0 chrIV 521219 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;QD=14.92;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1406,150,0 chrIV 521260 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=24.7512;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=12.30;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1324,150,0 chrIV 521409 . A G 2713 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=22.24;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2746,312,0 chrIV 521481 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=20.32;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2451,285,0 chrIV 521536 . A G 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.130;QD=21.50;ReadPosRankSum=1.619;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2011,234,0 chrIV 521623 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.53;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2421,270,0 chrIV 521666 . C A 2909 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.65;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2942,315,0 chrIV 521737 . G T 3152 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.42;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3185,351,0 chrIV 521769 . T A 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.762;QD=20.77;ReadPosRankSum=2.389;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2609,279,0 chrIV 521777 . T C 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.2090;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.041;QD=20.12;ReadPosRankSum=1.705;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2649,309,0 chrIV 522145 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.6848;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.13;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3377,396,0 chrIV 522237 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=3.670;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.781;QD=22.30;ReadPosRankSum=1.659;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3200,363,0 chrIV 522328 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.52;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4248,468,0 chrIV 522331 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.866;QD=19.36;ReadPosRankSum=1.091;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4202,465,0 chrIV 522457 . A T 5201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=16.7747;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;MQRankSum=-0.865;QD=23.64;ReadPosRankSum=2.394;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5201,528,0 chrIV 522598 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=20.04;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4309,471,0 chrIV 522622 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=16.54;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3092,363,0 chrIV 522628 . C A 3086 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;QD=16.86;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3119,345,0 chrIV 522640 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=4.343;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=0;MQRankSum=1.642;QD=16.35;ReadPosRankSum=1.696;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:3189,366,0 chrIV 522655 . C A 3027 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=16.63;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3060,336,0 chrIV 522661 . C G 2610 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=15.17;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2643,300,0 chrIV 522691 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.6686;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;MQRankSum=-1.881;QD=17.07;ReadPosRankSum=2.413;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2320,261,0 chrIV 522706 . T C 2080 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=18.25;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2113,243,0 chrIV 522718 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=0;QD=19.92;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2324,255,0 chrIV 522727 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=19.30;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1982,222,0 chrIV 522733 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;QD=19.67;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1882,207,0 chrIV 522742 . C T 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=91;Dels=0.00;FS=12.601;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=1.694;QD=18.22;ReadPosRankSum=0.171;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1691,183,0 chrIV 522793 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=20.20;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1730,201,0 chrIV 522835 . T A 1478 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=18.25;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1511,183,0 chrIV 522853 . C T 940 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;QD=17.09;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:99:973,120,0 chrIV 522860 . T A 921 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=0;QD=18.80;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:954,117,0 chrIV 522889 . A C 633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;MQRankSum=-0.289;QD=17.58;ReadPosRankSum=1.636;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:87:666,87,0 chrIV 522913 . G A 37.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=6.33;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:70,9,0 chrIV 522922 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;MQRankSum=0.736;QD=5.62;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:48,6,0 chrIV 522969 . C A 69.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=5.35;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:102,12,0 chrIV 523005 . C T 68.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=4.89;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:101,12,0 chrIV 523017 . C T 62.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.21;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:95,12,0 chrIV 523042 . T C 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=10.75;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:97,12,0 chrIV 523047 . A T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-1.026;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,2:4:6:48,6,0 chrIV 523048 . A T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.026;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,2:4:6:47,6,0 chrIV 523054 . A T 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.25;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:44,6,0 chrIV 523161 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.59;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrIV 523166 . T G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrIV 523167 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrIV 523174 . A C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrIV 523176 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrIV 523193 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrIV 523194 . G C 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrIV 523205 . C G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=3.00;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:65,9,0 chrIV 523207 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=1.09;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:43,6,0 chrIV 523208 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=1.09;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:43,6,0 chrIV 523209 . T G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=1.09;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:43,6,0 chrIV 523211 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=3.00;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:65,9,0 chrIV 523220 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=3.00;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:65,9,0 chrIV 523221 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=3.00;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:65,9,0 chrIV 523230 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=1.20;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:43,6,0 chrIV 523232 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=1.20;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:43,6,0 chrIV 523235 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=0;QD=1.09;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:43,6,0 chrIV 523370 . C T 97.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=9.71;SB=-8.688e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:130,18,0 chrIV 523401 . T C 710 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=0;QD=18.68;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:98:743,98,0 chrIV 523418 . G A 723 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=0;QD=19.03;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:756,99,0 chrIV 523433 . G C 721 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=0;QD=18.97;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:754,99,0 chrIV 523459 . A C 586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=33;Dels=0.00;FS=15.194;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.56;MQ0=0;MQRankSum=-0.532;QD=17.76;ReadPosRankSum=2.661;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:3,30:33:81:619,81,0 chrIV 523471 . G A 205 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=12.06;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:33:238,33,0 chrIV 523556 . C T 200 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=0;QD=18.18;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:233,30,0 chrIV 523559 . G A 202 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=16.83;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:235,30,0 chrIV 523563 . C T 205 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=17.08;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:238,30,0 chrIV 523574 . A G 242 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=17.29;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:36:275,36,0 chrIV 523576 . T G 241 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=17.21;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:36:274,36,0 chrIV 523585 . G A 344 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.36;MQ0=0;QD=15.64;SB=-6.655e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:48:377,48,0 chrIV 523592 . G A 340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.22;MQ0=0;QD=14.78;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:48:373,48,0 chrIV 523598 . A T 373 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=0;QD=15.54;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:51:406,51,0 chrIV 523600 . A T 371 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=0;QD=15.46;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:51:404,51,0 chrIV 523616 . G A 347 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=13.88;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:48:380,48,0 chrIV 523625 . C T 338 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=13.52;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:48:371,48,0 chrIV 523628 . G A 344 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=13.76;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:48:377,48,0 chrIV 523637 . A G 196 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=8.91;SB=-6.502e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:30:229,30,0 chrIV 523655 . T C 150.03 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=8.34;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:183,24,0 chrIV 523661 . G A 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.81;MQ0=0;QD=6.42;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:18:142,18,0 chrIV 523665 . G A 107.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=7.65;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:18:140,18,0 chrIV 523667 . A T 102.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.100;DP=14;Dels=0.00;FS=2.963;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;MQRankSum=-1.369;QD=7.30;ReadPosRankSum=2.100;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:2,12:14:18:135,18,0 chrIV 523826 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrIV 523829 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrIV 523833 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=0.727;QD=8.24;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:65,9,0 chrIV 523886 . C T 184 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=18.40;SB=-1.077e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:30:217,30,0 chrIV 523898 . A G 119.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=10;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=-0.296;QD=11.91;ReadPosRankSum=2.166;SB=-4.281e+01 GT:AD:DP:GQ:PL 1/1:3,7:10:21:152,21,0 chrIV 523907 . T A 119.06 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=17.01;SB=-4.281e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:21:152,21,0 chrIV 523913 . T A 97.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.88;SB=-4.263e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 523919 . G A 97.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.88;SB=-4.263e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 524036 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrIV 524038 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 524045 . A T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=9.09;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:87,12,0 chrIV 524048 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=9.09;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:87,12,0 chrIV 524054 . G T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=6.81;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:87,12,0 chrIV 524078 . T G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=4.96;SB=-8.739e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:87,12,0 chrIV 524081 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=4.96;SB=-8.745e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:87,12,0 chrIV 524086 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.54;SB=-8.749e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:87,12,0 chrIV 524096 . A G 80.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=6.17;SB=-8.726e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:113,15,0 chrIV 524111 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.54;SB=-4.396e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:71,9,0 chrIV 524117 . T C 38.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.54;SB=-4.396e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:71,9,0 chrIV 524135 . C T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.11;SB=-2.371e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:48,6,0 chrIV 524137 . A C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=1.98;SB=-2.371e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:47,6,0 chrIV 524144 . G A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.81;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIV 524264 . G C 67.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=9.64;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:100,12,0 chrIV 524270 . A T 85.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=9.47;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:118,15,0 chrIV 524294 . G A 167.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=16.70;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:200,24,0 chrIV 524346 . T G 141.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=17.63;SB=-5.694e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:174,21,0 chrIV 524359 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.99;SB=-2.221e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:74,9,0 chrIV 524459 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:56,6,0 chrIV 524461 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrIV 524474 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrIV 524475 . T C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrIV 524477 . G A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrIV 524483 . T G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrIV 524492 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrIV 524498 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrIV 525299 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 525302 . G T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 525309 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.01;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 525314 . A T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.01;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 525318 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.01;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 525326 . A C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 525488 . C T 361 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=0;QD=19.00;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:394,54,0 chrIV 525499 . C T 363 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=0;QD=19.11;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:396,54,0 chrIV 525504 . C T 335 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=18.61;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:51:368,51,0 chrIV 525511 . G A 335 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=18.61;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:51:368,51,0 chrIV 525523 . C T 314 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.99;MQ0=0;QD=18.47;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:48:347,48,0 chrIV 525655 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=5.50;SB=-4.347e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:65,9,0 chrIV 525658 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=5.50;SB=-4.347e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:65,9,0 chrIV 525679 . A G 119.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;QD=10.82;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:152,21,0 chrIV 525682 . T C 119.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;QD=10.82;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:152,21,0 chrIV 525700 . T C 119.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;QD=10.82;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:152,21,0 chrIV 525703 . C T 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;QD=8.83;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:130,18,0 chrIV 525706 . A G 97.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;MQRankSum=0.474;QD=8.83;ReadPosRankSum=1.423;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:18:130,18,0 chrIV 525715 . A T 97.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=9.71;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:130,18,0 chrIV 525718 . C T 97.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=9.71;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:130,18,0 chrIV 525754 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=4.54;SB=-8.749e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:87,12,0 chrIV 525757 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=4.54;SB=-8.749e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:87,12,0 chrIV 525760 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=4.54;SB=-8.749e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:87,12,0 chrIV 525766 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=2.75;SB=-4.396e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:65,9,0 chrIV 525772 . G T 75.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=5.02;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:108,15,0 chrIV 525793 . C T 119.06 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=4.96;SB=-6.507e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:21:152,21,0 chrIV 525805 . G A 146.03 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.06;MQ0=0;QD=5.84;SB=-6.504e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:24:179,24,0 chrIV 525814 . A C 144.03 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=0;QD=5.33;SB=-6.504e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:24:177,24,0 chrIV 525850 . C T 103.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=5.16;SB=-6.514e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:136,18,0 chrIV 525862 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=8.751;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;MQRankSum=1.273;QD=2.53;ReadPosRankSum=1.504;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:9:70,9,0 chrIV 525868 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=1.87;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:48,6,0 chrIV 525877 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.30;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:51,6,0 chrIV 525883 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.96;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:51,6,0 chrIV 525946 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=5.95;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrIV 525955 . C T 63.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=7.94;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:96,12,0 chrIV 525967 . G A 285 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=0;QD=16.76;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:39:318,39,0 chrIV 525976 . C T 472 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;QD=18.15;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:505,60,0 chrIV 525988 . G A 584 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.63;MQ0=0;QD=17.70;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:617,72,0 chrIV 526042 . C T 648 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=0;QD=20.25;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:81:681,81,0 chrIV 526063 . A G 310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=18;Dels=0.00;FS=3.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;MQRankSum=-0.070;QD=17.22;ReadPosRankSum=2.178;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:2,16:18:42:343,42,0 chrIV 526072 . A T 217 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=19.73;SB=-1.109e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:250,30,0 chrIV 526087 . A G 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;DP=6;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=-0.720;QD=7.00;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,4:6:9:74,9,0 chrIV 526090 . T A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrIV 526099 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.16;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:52,6,0 chrIV 526102 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.76;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:55,6,0 chrIV 526111 . A G 107.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=8.93;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:140,18,0 chrIV 526117 . G A 205.01 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=12.06;SB=-8.402e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:27:238,27,0 chrIV 526135 . G A 453 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=14.16;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:486,54,0 chrIV 526183 . T C 757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;MQRankSum=0.247;QD=9.01;ReadPosRankSum=1.691;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:93:790,93,0 chrIV 526186 . C T 799 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=9.40;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:93:832,93,0 chrIV 526215 . G A 717 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;QD=8.64;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:81:750,81,0 chrIV 526219 . T C 642 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=0;MQRankSum=0.856;QD=7.73;ReadPosRankSum=1.690;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:78:675,78,0 chrIV 526222 . G A 606 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=7.67;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:75:639,75,0 chrIV 526246 . A G 454 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=0;QD=7.09;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:60:487,60,0 chrIV 526267 . T C 427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=0;MQRankSum=0.542;QD=6.37;ReadPosRankSum=2.375;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:57:460,57,0 chrIV 526282 . T C 369 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=5.86;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:51:402,51,0 chrIV 526285 . C T 404 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.22;MQ0=0;QD=6.31;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:54:437,54,0 chrIV 526288 . T C 391 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=0;QD=6.02;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:54:424,54,0 chrIV 526297 . T C 321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=0;MQRankSum=-1.124;QD=4.34;ReadPosRankSum=1.685;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,73:74:45:354,45,0 chrIV 526303 . C A 394 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;QD=4.99;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,78:79:54:427,54,0 chrIV 526354 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=14.89;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1850,210,0 chrIV 526357 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=14.94;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1931,216,0 chrIV 526372 . T C 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=0;MQRankSum=-1.732;QD=15.97;ReadPosRankSum=1.708;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2348,279,0 chrIV 526420 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=0;QD=18.57;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2206,261,0 chrIV 526456 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=19.90;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2580,311,0 chrIV 526480 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=0;QD=20.07;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2020,248,0 chrIV 526483 . T G 1965 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.31;MQ0=0;QD=19.26;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1998,254,0 chrIV 526495 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=4.272;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=0;MQRankSum=-1.100;QD=18.99;ReadPosRankSum=1.702;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2217,272,0 chrIV 526558 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=7.733;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;MQRankSum=1.642;QD=22.75;ReadPosRankSum=2.415;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3276,384,0 chrIV 526591 . C T 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;MQRankSum=-1.732;QD=21.13;ReadPosRankSum=1.468;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2547,297,0 chrIV 526594 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=2.739;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;MQRankSum=-1.658;QD=20.90;ReadPosRankSum=2.343;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2436,288,0 chrIV 526633 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=17.89;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1303,162,0 chrIV 526636 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.46;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1103,135,0 chrIV 526651 . A G 851 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=0;QD=17.02;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:884,111,0 chrIV 526657 . G A 796 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.00;MQ0=0;QD=15.92;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:829,102,0 chrIV 526669 . T C 556 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=13.24;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:75:589,75,0 chrIV 526675 . C T 578 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=14.45;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:75:611,75,0 chrIV 526687 . T C 655 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;QD=14.24;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:84:688,84,0 chrIV 526693 . A G 655 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=0;QD=13.94;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:84:688,84,0 chrIV 526699 . A C 617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=0;MQRankSum=0.530;QD=12.59;ReadPosRankSum=1.662;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:81:650,81,0 chrIV 526727 . A G 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=0;MQRankSum=0.449;QD=14.23;ReadPosRankSum=1.689;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1186,141,0 chrIV 526734 . T C 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=85;Dels=0.00;FS=10.408;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=0;MQRankSum=0.043;QD=13.19;ReadPosRankSum=2.392;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1154,135,0 chrIV 526741 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.6695;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=13.38;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1251,150,0 chrIV 526747 . A G 1270 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6779;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=0;QD=13.51;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1303,156,0 chrIV 526763 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=0;QD=11.23;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1291,150,0 chrIV 526783 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=0;QD=10.40;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1187,147,0 chrIV 526795 . C T 995 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.93;MQ0=0;QD=10.15;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1028,126,0 chrIV 526810 . T C 565 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=0;QD=7.43;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:75:598,75,0 chrIV 526837 . T C 271 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.27;MQ0=0;QD=5.89;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:39:304,39,0 chrIV 526840 . C T 251 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=0;QD=5.98;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:36:284,36,0 chrIV 526864 . A G 215 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=0;QD=11.32;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:248,33,0 chrIV 526882 . T C 167.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=0;QD=11.93;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:200,27,0 chrIV 526888 . G T 190 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=0;QD=12.67;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:30:223,30,0 chrIV 526918 . A T 298 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.23;MQ0=0;QD=12.96;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:45:331,45,0 chrIV 526927 . G A 431 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=15.96;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:63:464,63,0 chrIV 526942 . C A 936 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=0;QD=17.33;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:969,125,0 chrIV 526957 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;QD=19.69;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1904,227,0 chrIV 526978 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=113;Dels=0.00;FS=5.523;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;MQRankSum=1.402;QD=21.27;ReadPosRankSum=2.938;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2436,293,0 chrIV 527002 . A G 2495 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;QD=22.28;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2528,302,0 chrIV 527050 . T C 888 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=0;QD=18.89;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:921,117,0 chrIV 527056 . T C 391 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.34;MQ0=0;QD=12.61;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:424,57,0 chrIV 527057 . C T 400 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.34;MQ0=0;QD=12.90;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:433,57,0 chrIV 527080 . T C 187 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.43;MQ0=0;QD=14.38;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:30:220,30,0 chrIV 527095 . T C 187 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.43;MQ0=0;QD=14.38;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:30:220,30,0 chrIV 527108 . C T 105.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=13.14;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:138,18,0 chrIV 527122 . G A 272 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;QD=18.13;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:305,39,0 chrIV 527128 . C T 328 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.40;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:361,45,0 chrIV 527134 . C T 338 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.10;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:371,48,0 chrIV 527149 . C T 571 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=16.31;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:72:604,72,0 chrIV 527179 . T C 735 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=15.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:96:768,96,0 chrIV 527206 . A G 698 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=0;MQRankSum=-0.606;QD=14.85;ReadPosRankSum=2.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,45:47:93:731,93,0 chrIV 527210 . A C 667 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=15.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:87:700,87,0 chrIV 527217 . C A 630 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=15.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:81:663,81,0 chrIV 527222 . A C 602 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=15.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:81:635,81,0 chrIV 527227 . T G 560 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=17.50;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:75:593,75,0 chrIV 527236 . A G 428 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=0;MQRankSum=-0.693;QD=14.27;ReadPosRankSum=1.617;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:60:461,60,0 chrIV 527249 . A G 257 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=0;QD=15.12;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:39:290,39,0 chrIV 527253 . T C 232 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=0;QD=14.50;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:36:265,36,0 chrIV 527269 . G A 152.03 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=15.20;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:185,24,0 chrIV 527271 . G A 150.03 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=15.00;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:183,24,0 chrIV 528028 . T G 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.00;FS=10.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=-1.231;QD=7.39;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,3:5:9:69,9,0 chrIV 528043 . C T 189.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=18.90;SB=-1.069e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:222,27,0 chrIV 528052 . A G 203 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=18.45;SB=-1.219e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:236,30,0 chrIV 528070 . C T 217 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=19.73;SB=-1.347e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:250,30,0 chrIV 528112 . A G 172.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=17.20;SB=-8.677e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:205,24,0 chrIV 537961 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrIV 537970 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=5.62;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:77,9,0 chrIV 537976 . C T 53.97 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=4.91;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:86,9,0 chrIV 537994 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=1.84;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:78,9,0 chrIV 538009 . C T 96.26 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=2.60;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:15:129,15,0 chrIV 538030 . C G 200.01 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=3.33;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:27:233,27,0 chrIV 538039 . T G 271 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=-0.350;QD=3.66;ReadPosRankSum=2.383;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,72:74:36:304,36,0 chrIV 538042 . G A 291 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=3.99;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:36:324,36,0 chrIV 538051 . C T 420 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=5.60;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:51:453,51,0 chrIV 538054 . A G 395 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=5.00;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:51:428,51,0 chrIV 538057 . T C 453 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=0.482;QD=5.39;ReadPosRankSum=2.917;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:3,81:84:54:486,54,0 chrIV 538066 . C T 596 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=6.21;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:69:629,69,0 chrIV 538069 . A G 685 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=7.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:84:718,84,0 chrIV 538081 . A G 673 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:84:706,84,0 chrIV 538082 . T C 713 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.443;QD=7.43;ReadPosRankSum=1.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,95:96:84:746,84,0 chrIV 538120 . G T 1087 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.837;QD=9.06;ReadPosRankSum=1.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1120,123,0 chrIV 538141 . T A 1416 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1449,165,0 chrIV 538156 . A G 990 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1023,123,0 chrIV 538159 . G A 1049 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1082,123,0 chrIV 538162 . C A 1017 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1050,120,0 chrIV 538163 . G C 992 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1025,120,0 chrIV 538165 . G C 991 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1024,120,0 chrIV 538167 . T C 1006 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=10.59;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1039,120,0 chrIV 538168 . A G 963 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=10.03;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:996,120,0 chrIV 538174 . A G 1159 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=6.40;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:99:1192,135,0 chrIV 538183 . G A 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=10.881;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=0;MQRankSum=1.697;QD=8.11;ReadPosRankSum=-0.477;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:1,195:197:99:1631,174,0 chrIV 538221 . T C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=222;Dels=0.00;FS=2.399;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;MQRankSum=-2.258;QD=12.56;ReadPosRankSum=3.382;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:4,218:222:99:2822,321,0 chrIV 538470 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.888;QD=19.43;ReadPosRankSum=1.703;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2365,264,0 chrIV 538561 . T A 1560 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.08;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1593,180,0 chrIV 538587 . T A 1010 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.04;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1043,114,0 chrIV 538707 . T A 421 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.05;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:454,51,0 chrIV 538829 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=23.58;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2037,243,0 chrIV 538864 . A T 1986 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=24.22;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2019,228,0 chrIV 538878 . G T 1526 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=20.35;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1559,174,0 chrIV 538892 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=17.38;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1545,171,0 chrIV 538990 . T G 3771.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=24.17;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3771,429,0 chrIV 539061 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.27;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3324,372,0 chrIV 539068 . A G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=6.257;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.563;QD=19.65;ReadPosRankSum=2.420;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3341,375,0 chrIV 539123 . C T 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.1955;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.851;QD=16.15;ReadPosRankSum=0.646;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:3150,331,0 chrIV 539136 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.07;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3577,393,0 chrIV 539195 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9344;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.541;QD=16.76;ReadPosRankSum=1.680;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3335,369,0 chrIV 539207 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.655;QD=18.16;ReadPosRankSum=1.696;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:3542,411,0 chrIV 539259 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.2701;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.49;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3489,384,0 chrIV 539295 . T G 3707.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=17.6689;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.68;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3707,420,0 chrIV 539468 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.55;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4014,453,0 chrIV 539524 . A T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.73;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3324,372,0 chrIV 539648 . T G 3677.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.76;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3677,417,0 chrIV 539667 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=3.139;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.476;QD=20.41;ReadPosRankSum=-1.003;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3490,408,0 chrIV 539680 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.73;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3759,408,0 chrIV 540228 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.8299;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.03;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3708,405,0 chrIV 540514 . A T 1903 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.4384;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1936,213,0 chrIV 540965 . G C 1855 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.57;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1888,216,0 chrIV 540984 . A G 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=100;Dels=0.00;FS=3.578;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.424;QD=21.35;ReadPosRankSum=1.626;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2168,243,0 chrIV 541099 . T A 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=3.129;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.796;QD=23.15;ReadPosRankSum=1.685;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1746,192,0 chrIV 541248 . T C 2576 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.21;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2609,300,0 chrIV 541274 . T C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.917;QD=22.58;ReadPosRankSum=2.310;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2426,273,0 chrIV 541470 . C G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.34;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3338,393,0 chrIV 541548 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.95;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3396,384,0 chrIV 541567 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.509;QD=21.71;ReadPosRankSum=1.710;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3409,381,0 chrIV 541727 . T C 3058 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6184;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.69;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3091,354,0 chrIV 541830 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.20;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2800,318,0 chrIV 541854 . G T 2693 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.80;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2726,306,0 chrIV 541868 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8865;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=18.93;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2513,294,0 chrIV 541985 . T A 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=119;Dels=0.00;FS=2.912;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.631;QD=22.69;ReadPosRankSum=2.408;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2733,300,0 chrIV 542041 . C T 2368 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.77;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2401,267,0 chrIV 542066 . T A 2271 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.63;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2304,264,0 chrIV 542116 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7297;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=22.57;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3215,348,0 chrIV 542141 . C G 2935 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=20.67;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2968,342,0 chrIV 542146 . A G 2948 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=20.91;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2981,348,0 chrIV 542170 . A T 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.845;HaplotypeScore=4.7330;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.594;QD=19.69;ReadPosRankSum=1.708;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2848,327,0 chrIV 542225 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.1783;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.71;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3725,432,0 chrIV 542914 . C T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4184,456,0 chrIV 543278 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.16;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3598,402,0 chrIV 543502 . G T 2415 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.95;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2448,279,0 chrIV 543883 . T A 1584 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.64;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1617,177,0 chrIV 543900 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=17.36;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1352,147,0 chrIV 544280 . T G 1516 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.0226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.381;QD=21.97;ReadPosRankSum=-0.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1549,157,0 chrIV 544588 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.9887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.39;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3658,408,0 chrIV 544641 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=21.56;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2405,267,0 chrIV 545001 . T A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.360;DP=107;Dels=0.00;FS=10.147;HaplotypeScore=93.3661;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;MQRankSum=2.403;QD=0.15;ReadPosRankSum=-4.458;SB=1.24 GT:AD:DP:GQ:PL 1/1:97,10:107:6:47,6,0 chrIV 545047 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=20.55;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3115,342,0 chrIV 545265 . C T 5597.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.22;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5597,612,0 chrIV 545314 . A G 5365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=260;Dels=0.00;FS=4.193;HaplotypeScore=6.3951;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.839;QD=20.63;ReadPosRankSum=1.719;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:5365,621,0 chrIV 545325 . G A 5555.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.13;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:5555,603,0 chrIV 545330 . T C 5515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=281;Dels=0.00;FS=2.849;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-1.838;QD=19.63;ReadPosRankSum=2.423;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:2,279:281:99:5515,630,0 chrIV 545374 . C T 5278.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=18.3264;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=18.72;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:5278,594,0 chrIV 545483 . A G 5584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=257;Dels=0.00;FS=5.254;HaplotypeScore=17.6959;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.082;QD=21.73;ReadPosRankSum=2.941;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:3,254:257:99:5584,642,0 chrIV 546251 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.6924;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.38;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3613,396,0 chrIV 546361 . T G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=106;Dels=0.00;FS=3.046;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.591;QD=18.11;ReadPosRankSum=2.403;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1953,228,0 chrIV 546573 . A G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=140;Dels=0.00;FS=4.676;HaplotypeScore=12.2585;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-1.296;QD=16.14;ReadPosRankSum=1.706;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,134:140:99:2293,270,0 chrIV 547556 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.3129;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.21;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3120,336,0 chrIV 547565 . T C 2885 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.36;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2918,327,0 chrIV 547646 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.80;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1994,219,0 chrIV 547728 . C G 1336 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.94;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1369,156,0 chrIV 547747 . C T 1184 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.41;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1217,135,0 chrIV 547789 . T C 1033 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=16.66;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1066,123,0 chrIV 547794 . G T 1146 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=18.48;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1179,129,0 chrIV 547830 . G C 948 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=18.59;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:981,114,0 chrIV 547842 . A C 1035 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=16.97;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1068,120,0 chrIV 547848 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=17.95;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1128,120,0 chrIV 547904 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=16.24;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1170,129,0 chrIV 547907 . C A 1182 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=16.65;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1215,138,0 chrIV 548255 . C T 5226.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.08;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5226,559,0 chrIV 548511 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=61.00;MQ0=0;QD=20.96;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1521,171,0 chrIV 548809 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=138;Dels=0.00;FS=11.883;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.118;QD=20.96;ReadPosRankSum=2.413;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2925,330,0 chrIV 548909 . A G 2810 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.30;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2843,336,0 chrIV 549184 . A T 6013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=251;Dels=0.00;FS=7.847;HaplotypeScore=15.7696;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.217;QD=23.96;ReadPosRankSum=2.410;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:6013,657,0 chrIV 549263 . G A 5231.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=16.9127;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.94;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5231,582,0 chrIV 549376 . T G 6351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=277;Dels=0.00;FS=3.530;HaplotypeScore=24.5368;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.694;QD=22.93;ReadPosRankSum=1.682;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:1,274:277:99:6351,717,0 chrIV 549536 . A G 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.7855;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.360;QD=21.11;ReadPosRankSum=1.682;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4369,486,0 chrIV 549744 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4811,516,0 chrIV 549856 . C T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.40;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4749,510,0 chrIV 550499 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=179;Dels=0.00;FS=5.961;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-1.955;QD=22.73;ReadPosRankSum=2.915;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:4069,465,0 chrIV 550672 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.28;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3521,369,0 chrIV 550699 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.88;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3347,375,0 chrIV 550893 . C G 4055.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.65;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4055,465,0 chrIV 551387 . C A 5028.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.25;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5028,570,0 chrIV 551587 . T C 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=210;Dels=0.00;FS=8.981;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.333;QD=20.53;ReadPosRankSum=2.426;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4311,480,0 chrIV 551626 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1767;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.093;QD=18.51;ReadPosRankSum=1.711;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3124,360,0 chrIV 551743 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.85;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3114,354,0 chrIV 551775 . T C 2520 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.32;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2553,291,0 chrIV 551813 . G A 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.399;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=27.5666;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=1.432;QD=13.65;ReadPosRankSum=0.866;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1453,159,0 chrIV 551843 . G T 1099 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=17.5541;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=11.57;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:95:99:1132,132,0 chrIV 551991 . C A 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=20.3227;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=2.117;QD=19.34;ReadPosRankSum=1.031;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2218,206,0 chrIV 552102 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.806;DP=152;Dels=0.00;FS=14.500;HaplotypeScore=13.7902;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.195;QD=15.56;ReadPosRankSum=4.139;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:6,145:152:99:2398,273,0 chrIV 552354 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.26;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3361,390,0 chrIV 552557 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.590;QD=24.16;ReadPosRankSum=1.714;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4735,534,0 chrIV 552846 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.96;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3379,375,0 chrIV 553004 . A T 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;MQRankSum=-0.901;QD=20.04;ReadPosRankSum=2.355;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1596,180,0 chrIV 553583 . A G 2804 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.61;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2837,321,0 chrIV 553591 . A G 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=2.992;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-2.014;QD=18.38;ReadPosRankSum=2.415;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2625,291,0 chrIV 553624 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.66;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2864,306,0 chrIV 553651 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.41;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2555,279,0 chrIV 553670 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.73;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2533,276,0 chrIV 553681 . A G 2573 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.87;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2606,297,0 chrIV 553867 . C G 2487 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.26;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2520,285,0 chrIV 554904 . G C 4577.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.7865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4577,519,0 chrIV 555214 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.64;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1678,198,0 chrIV 555283 . C T 1096 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.93;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1129,129,0 chrIV 555346 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.95;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1433,153,0 chrIV 555365 . C A 1518 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.24;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1551,165,0 chrIV 555379 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=16.85;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1364,147,0 chrIV 555381 . C G 1215 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=15.19;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1248,144,0 chrIV 555425 . A C 1455 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=16.92;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1488,165,0 chrIV 555588 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=19.10;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1332,153,0 chrIV 555783 . C T 4869.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.4114;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.23;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4869,543,0 chrIV 556248 . G A 5411.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.84;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5411,597,0 chrIV 556617 . A G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=6.948;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.632;QD=23.45;ReadPosRankSum=1.666;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2495,285,0 chrIV 556732 . T C 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=22.10;ReadPosRankSum=1.666;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2354,270,0 chrIV 556934 . A C 3221.02 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.91;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3254,378,0 chrIV 556996 . A G 4206.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.24;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4206,480,0 chrIV 557054 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.78;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4283,477,0 chrIV 557109 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=2.8189;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.02;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4265,456,0 chrIV 557113 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.10;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4050,444,0 chrIV 557161 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=205;Dels=0.00;FS=6.085;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-1.458;QD=17.55;ReadPosRankSum=2.425;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:3598,408,0 chrIV 557710 . A G 5276.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.74;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5276,606,0 chrIV 557899 . T C 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=215;Dels=0.00;FS=8.365;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.325;QD=21.05;ReadPosRankSum=2.404;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:4526,519,0 chrIV 558895 . A G 3129 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.19;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3162,357,0 chrIV 558963 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=185;Dels=0.00;FS=8.474;HaplotypeScore=12.0009;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.552;QD=23.27;ReadPosRankSum=3.365;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:4305,495,0 chrIV 559020 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.02;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4479,492,0 chrIV 559132 . T A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.78;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3448,375,0 chrIV 559159 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.64;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3374,366,0 chrIV 559236 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.7367;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.80;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3525,375,0 chrIV 559582 . G T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.80;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4172,462,0 chrIV 559935 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.20;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2852,318,0 chrIV 560433 . G A 4324.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.76;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4324,468,0 chrIV 560449 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.40;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3981,450,0 chrIV 560536 . T A 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=3.693;HaplotypeScore=12.6007;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.358;QD=20.69;ReadPosRankSum=1.700;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4408,495,0 chrIV 560715 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.68;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3292,372,0 chrIV 561053 . A G 840 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.11;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:873,99,0 chrIV 561239 . A T 2103 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.37;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2136,231,0 chrIV 561251 . A G 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.01;FS=5.229;HaplotypeScore=12.8703;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.342;QD=19.55;ReadPosRankSum=1.516;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1656,183,0 chrIV 561671 . T A 5541.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.75;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5541,598,0 chrIV 561926 . G A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.11;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4068,435,0 chrIV 562716 . T C 2715 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.01;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2748,312,0 chrIV 562925 . A G 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=88;Dels=0.00;FS=3.040;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-1.075;QD=20.75;ReadPosRankSum=2.393;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1859,213,0 chrIV 562970 . G T 1576 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=18.54;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1609,174,0 chrIV 562989 . G C 1143 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;QD=14.29;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1176,135,0 chrIV 563010 . C T 365 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.454;DP=77;Dels=0.00;FS=5.755;HaplotypeScore=59.1811;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;MQRankSum=-1.414;QD=4.74;ReadPosRankSum=1.494;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:3,73:77:51:398,51,0 chrIV 563014 . T C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.267;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=55.5104;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;MQRankSum=-2.642;QD=0.69;ReadPosRankSum=2.642;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:9:77,9,0 chrIV 563017 . A T 621 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=52.5357;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=8.62;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:75:654,75,0 chrIV 563021 . G A 766 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=54.9716;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=9.70;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:87:799,87,0 chrIV 563080 . C A 1880 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.18;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1913,216,0 chrIV 563209 . G C 2238 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=20.92;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2271,258,0 chrIV 563218 . G T 2362 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.5807;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=20.72;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2395,258,0 chrIV 563468 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.08;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3877,432,0 chrIV 564228 . C T 5767.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5767,645,0 chrIV 564360 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.32;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4192,483,0 chrIV 564366 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.00;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4379,480,0 chrIV 564428 . A T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.70;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4432,501,0 chrIV 564745 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.36;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2746,306,0 chrIV 564875 . T A 2759 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2792,306,0 chrIV 565245 . G A 4724.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.8742;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.18;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4724,534,0 chrIV 565266 . C T 5048.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.64;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5048,558,0 chrIV 565313 . C T 4930.01 SnpCluster AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=19.26;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:4930,555,0 chrIV 565317 . T G 4834.01 SnpCluster AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.96;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4834,546,0 chrIV 565322 . A G 4795.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=252;Dels=0.00;FS=8.619;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.918;QD=19.03;ReadPosRankSum=2.430;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:2,248:252:99:4795,543,0 chrIV 565398 . G A 5153.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.21;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5153,570,0 chrIV 565468 . A G 5605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=263;Dels=0.00;FS=2.870;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-1.747;QD=21.31;ReadPosRankSum=2.431;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:2,260:263:99:5605,633,0 chrIV 565653 . G T 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8200;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.068;QD=18.83;ReadPosRankSum=2.929;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:4,164:169:99:3216,360,0 chrIV 565654 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=169;Dels=0.01;FS=2.584;HaplotypeScore=18.0006;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.295;QD=18.31;ReadPosRankSum=2.898;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3127,363,0 chrIV 565705 . T C 2618 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.8403;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.39;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2651,300,0 chrIV 565786 . T C 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=108;Dels=0.00;FS=6.833;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-1.047;QD=21.98;ReadPosRankSum=2.358;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2407,276,0 chrIV 565806 . G T 2403 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.90;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2436,261,0 chrIV 565819 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4906;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.14;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2309,246,0 chrIV 565887 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=174;Dels=0.00;FS=2.580;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.075;QD=21.58;ReadPosRankSum=2.948;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3755,432,0 chrIV 566007 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=4.856;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.577;QD=23.22;ReadPosRankSum=1.577;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3622,408,0 chrIV 566376 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.7311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.15;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3876,447,0 chrIV 566463 . A T 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.3726;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.047;QD=22.67;ReadPosRankSum=1.713;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4012,444,0 chrIV 566726 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.83;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3046,327,0 chrIV 567037 . A G 4421.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.03;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4421,498,0 chrIV 567129 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3433,375,0 chrIV 567240 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.94;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3464,375,0 chrIV 567259 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.99;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3609,399,0 chrIV 567321 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.07;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4044,447,0 chrIV 567364 . A G 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=5.170;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.749;QD=24.84;ReadPosRankSum=1.662;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3677,408,0 chrIV 567474 . T G 2678 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.14;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2711,315,0 chrIV 567804 . A T 2144 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.97;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2177,243,0 chrIV 567805 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.34;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2238,249,0 chrIV 567972 . A C 3918.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1793;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.91;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3918,456,0 chrIV 568017 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.54;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3955,426,0 chrIV 568062 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=2.913;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.796;QD=22.45;ReadPosRankSum=2.403;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3570,411,0 chrIV 568131 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=19.3887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.093;QD=20.66;ReadPosRankSum=1.711;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,167:172:99:3553,411,0 chrIV 568816 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=21.44;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1941,210,0 chrIV 568833 . A T 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.660;DP=86;Dels=0.00;FS=11.563;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.847;QD=18.63;ReadPosRankSum=2.871;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1635,183,0 chrIV 568863 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=17.14;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1764,198,0 chrIV 568871 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=17.61;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2005,225,0 chrIV 569958 . G T 2868 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.56;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2901,318,0 chrIV 569997 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.28;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2799,309,0 chrIV 570106 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.5039;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.45;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2600,276,0 chrIV 570139 . T A 2915 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.32;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2948,321,0 chrIV 570168 . T C 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=4.517;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.329;QD=20.61;ReadPosRankSum=1.613;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2444,276,0 chrIV 570211 . A T 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=127;Dels=0.00;FS=2.975;HaplotypeScore=18.1058;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.342;QD=19.65;ReadPosRankSum=2.176;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2529,285,0 chrIV 570522 . A G 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=138;Dels=0.00;FS=2.687;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.880;QD=21.03;ReadPosRankSum=2.378;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2935,333,0 chrIV 570563 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.79;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2817,312,0 chrIV 570788 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.4902;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.79;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4687,531,0 chrIV 570860 . G A 5179.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.12;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5179,556,0 chrIV 571221 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=12.3752;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.73;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3637,396,0 chrIV 571602 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3483,375,0 chrIV 571737 . T C 2220 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2253,258,0 chrIV 571806 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2584,297,0 chrIV 572492 . G A 3068 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3101,330,0 chrIV 572610 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.93;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3325,369,0 chrIV 572766 . C T 4277.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.16;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4277,465,0 chrIV 572826 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4779;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.67;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3906,423,0 chrIV 572934 . C T 5186.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.68;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5186,573,0 chrIV 573174 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=181;Dels=0.00;FS=2.575;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.402;QD=19.72;ReadPosRankSum=2.961;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:3569,405,0 chrIV 573177 . T C 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=4.472;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.362;QD=19.39;ReadPosRankSum=1.694;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3529,419,0 chrIV 573672 . G A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.66;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3739,417,0 chrIV 573787 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=142;Dels=0.00;FS=5.247;HaplotypeScore=12.9362;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.525;QD=24.37;ReadPosRankSum=2.951;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3461,387,0 chrIV 573928 . A G 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=103;Dels=0.00;FS=3.274;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.630;QD=22.29;ReadPosRankSum=1.596;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2329,264,0 chrIV 574092 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.38;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2808,321,0 chrIV 574093 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.33;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2903,318,0 chrIV 574445 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.28;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4277,474,0 chrIV 574619 . C T 4984.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.6477;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.86;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4984,564,0 chrIV 574753 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=3.895;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.693;QD=18.56;ReadPosRankSum=1.713;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3341,381,0 chrIV 574804 . G C 3988.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.7952;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.99;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3988,450,0 chrIV 574934 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.58;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3607,405,0 chrIV 574968 . G C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.91;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3324,381,0 chrIV 574989 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.97;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3274,372,0 chrIV 575468 . A C 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=137;Dels=0.00;FS=5.994;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.568;QD=21.48;ReadPosRankSum=2.917;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:3,130:137:99:2976,342,0 chrIV 575591 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.9672;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4067,447,0 chrIV 575774 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.64;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4114,456,0 chrIV 575938 . C G 2650 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.04;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2683,306,0 chrIV 575960 . T G 2530 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.26;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2563,294,0 chrIV 576025 . C A 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.136;DP=131;Dels=0.00;FS=2.848;HaplotypeScore=7.1062;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.235;QD=14.69;ReadPosRankSum=-0.366;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:1958,216,0 chrIV 576258 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.77;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1674,186,0 chrIV 576308 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.448;QD=20.69;ReadPosRankSum=1.693;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1874,213,0 chrIV 576472 . T A 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.711;QD=22.02;ReadPosRankSum=1.586;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2125,225,0 chrIV 576497 . C A 1365 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=16.45;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1398,153,0 chrIV 576503 . G T 1116 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=14.68;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1149,126,0 chrIV 576577 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.36;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2554,279,0 chrIV 576635 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.36;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2328,267,0 chrIV 576707 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=19.91;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2084,228,0 chrIV 576713 . C T 1986 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=18.91;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2019,219,0 chrIV 576722 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=19.21;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2108,240,0 chrIV 576824 . A G 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=129;Dels=0.00;FS=9.887;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.738;QD=21.74;ReadPosRankSum=2.945;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:3,124:129:99:2837,318,0 chrIV 576917 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=168;Dels=0.00;FS=2.570;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.515;QD=21.55;ReadPosRankSum=2.958;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3620,417,0 chrIV 578033 . C T 5130.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.21;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5130,573,0 chrIV 578168 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=4.384;HaplotypeScore=7.5915;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.910;QD=20.87;ReadPosRankSum=1.703;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2496,288,0 chrIV 578566 . T A 2142 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.34;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2175,234,0 chrIV 578638 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=152;Dels=0.00;FS=5.271;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.881;QD=22.55;ReadPosRankSum=3.390;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3428,378,0 chrIV 578649 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.888;QD=21.99;ReadPosRankSum=1.710;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3430,384,0 chrIV 578728 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=4.279;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.970;QD=22.77;ReadPosRankSum=1.686;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3416,405,0 chrIV 578841 . G A 4350.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.59;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4350,468,0 chrIV 579199 . C A 1895 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=23.40;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1928,207,0 chrIV 579222 . A T 1727 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=23.03;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1760,195,0 chrIV 579248 . A T 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=4.472;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.445;QD=0.71;ReadPosRankSum=1.534;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:9:82,9,0 chrIV 579575 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=0.445;QD=20.72;ReadPosRankSum=1.701;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,112:116:99:2436,273,0 chrIV 579608 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.573;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.000;QD=23.29;ReadPosRankSum=1.709;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3447,390,0 chrIV 579720 . A T 2705 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.49;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2738,306,0 chrIV 579755 . A G 2026 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=7.337;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;MQRankSum=-0.994;QD=16.21;ReadPosRankSum=2.371;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2059,237,0 chrIV 579762 . A C 2031 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.445;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=-0.935;QD=15.99;ReadPosRankSum=1.705;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2064,234,0 chrIV 579764 . G A 2144 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=16.62;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2177,240,0 chrIV 579791 . C A 2647 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=17.19;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2680,291,0 chrIV 579813 . A G 2790 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=18.24;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2823,321,0 chrIV 579835 . C A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=20.93;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3495,384,0 chrIV 579869 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=19.35;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3051,339,0 chrIV 579879 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=151;Dels=0.00;FS=2.946;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=0.090;QD=18.01;ReadPosRankSum=2.400;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:2752,315,0 chrIV 579940 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=18.68;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2779,306,0 chrIV 580006 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=180;Dels=0.00;FS=5.309;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-0.631;QD=18.53;ReadPosRankSum=2.960;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:3,174:180:99:3336,381,0 chrIV 580011 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=188;Dels=0.00;FS=2.644;HaplotypeScore=7.7282;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-0.598;QD=18.61;ReadPosRankSum=2.410;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3499,399,0 chrIV 580119 . G C 3625.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.52;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3625,408,0 chrIV 580191 . T C 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.8703;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.481;QD=22.20;ReadPosRankSum=1.665;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4617,531,0 chrIV 580230 . T C 4743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=4.010;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.263;QD=22.06;ReadPosRankSum=1.716;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4743,552,0 chrIV 580374 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.41;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2071,240,0 chrIV 580561 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.46;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2859,306,0 chrIV 580767 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.295;QD=22.45;ReadPosRankSum=1.693;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3951,456,0 chrIV 580820 . T A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.57;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3724,405,0 chrIV 580889 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.032;QD=21.19;ReadPosRankSum=1.668;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3411,393,0 chrIV 580899 . T C 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.142;QD=20.95;ReadPosRankSum=1.710;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3352,375,0 chrIV 580972 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=10.9751;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.21;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3457,387,0 chrIV 581004 . A C 4234.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.76;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4234,480,0 chrIV 581091 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=18.3089;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.93;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4151,447,0 chrIV 581181 . T C 3954.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.73;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3954,453,0 chrIV 581388 . A G 2688 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2721,315,0 chrIV 581521 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2637,285,0 chrIV 581696 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.85;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2742,300,0 chrIV 581857 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.3516;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.08;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3753,444,0 chrIV 581897 . A C 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=190;Dels=0.00;FS=4.657;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.954;QD=22.21;ReadPosRankSum=1.602;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4220,486,0 chrIV 582053 . C G 4359.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6191;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.59;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,188:193:99:4359,498,0 chrIV 582106 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=208;Dels=0.00;FS=2.753;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.907;QD=23.84;ReadPosRankSum=2.378;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4958,564,0 chrIV 582132 . G T 5465.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.18;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5465,586,0 chrIV 582466 . T G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.733;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.403;QD=20.91;ReadPosRankSum=1.682;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2919,339,0 chrIV 582642 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=61.14;MQ0=0;QD=22.96;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2191,246,0 chrIV 582866 . A T 2967 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3000,333,0 chrIV 583013 . A G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=3.634;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.528;QD=24.10;ReadPosRankSum=1.714;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4507,510,0 chrIV 583094 . T C 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=192;Dels=0.00;FS=5.710;HaplotypeScore=11.7877;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.037;QD=22.37;ReadPosRankSum=2.921;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:4295,495,0 chrIV 583433 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6815;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.43;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2770,321,0 chrIV 583564 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=141.3165;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.21;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3088,339,0 chrIV 583765 . G A 3544.01 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=21.88;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3544,381,0 chrIV 583767 . A G 3315.01 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=20.46;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3315,384,0 chrIV 583769 . C T 3557.01 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=22.37;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3557,384,0 chrIV 583925 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.29;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3790,414,0 chrIV 583943 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.220;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.958;QD=22.11;ReadPosRankSum=1.712;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3759,420,0 chrIV 584012 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.85;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3450,399,0 chrIV 584134 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.85;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3386,384,0 chrIV 584255 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=22.43;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2635,288,0 chrIV 584423 . A C 3874.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.77;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3874,438,0 chrIV 584534 . G A 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1674;MLEAC=2;MLEAF=1.00;MQ=61.06;MQ0=0;MQRankSum=-0.536;QD=24.58;ReadPosRankSum=0.843;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2835,309,0 chrIV 584819 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.18;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2444,276,0 chrIV 585257 . A G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.3500;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.091;QD=20.38;ReadPosRankSum=1.702;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2356,276,0 chrIV 585317 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-2.330;QD=21.44;ReadPosRankSum=2.250;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2735,312,0 chrIV 585358 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.82;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3361,378,0 chrIV 585389 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.091;QD=21.90;ReadPosRankSum=1.706;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2990,342,0 chrIV 585467 . A G 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=4.363;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.903;QD=19.50;ReadPosRankSum=1.708;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2802,321,0 chrIV 585476 . C G 3063 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.70;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3096,348,0 chrIV 585554 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.749;DP=206;Dels=0.00;FS=10.171;HaplotypeScore=15.3029;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.640;QD=21.12;ReadPosRankSum=2.946;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:4351,459,0 chrIV 586079 . A G 5008.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.97;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5008,576,0 chrIV 586700 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=3.015;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.281;QD=21.93;ReadPosRankSum=2.398;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3169,366,0 chrIV 586725 . A G 2885 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=20.46;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2918,327,0 chrIV 586731 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.82;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2828,315,0 chrIV 586742 . C G 2683 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.16;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2716,306,0 chrIV 586820 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=3.590;HaplotypeScore=4.5060;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.660;QD=19.87;ReadPosRankSum=1.696;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1960,222,0 chrIV 586838 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.00;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2093,237,0 chrIV 587113 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.92;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2625,291,0 chrIV 587237 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.4087;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.95;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2924,330,0 chrIV 587347 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.72;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2691,309,0 chrIV 587378 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.4796;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.33;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2467,276,0 chrIV 587593 . C A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=25.40;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4293,465,0 chrIV 587899 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=16.43;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:1988,222,0 chrIV 588039 . A T 2899 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.01;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2932,327,0 chrIV 588140 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.3723;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.13;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3956,438,0 chrIV 588381 . A T 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=164;Dels=0.00;FS=2.567;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.969;QD=21.70;ReadPosRankSum=2.933;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3559,381,0 chrIV 588480 . A G 2731 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=7.7935;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=19.23;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2764,312,0 chrIV 588496 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=18.49;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2474,264,0 chrIV 588509 . A G 2211 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=17.01;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2244,252,0 chrIV 588583 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.2378;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.56;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2470,276,0 chrIV 588670 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.78;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2153,243,0 chrIV 588682 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=20.13;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2127,240,0 chrIV 588705 . G T 2103 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=21.03;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2136,231,0 chrIV 588789 . T C 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.731;QD=23.39;ReadPosRankSum=1.655;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2138,240,0 chrIV 589421 . C A 2173 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.30;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2206,249,0 chrIV 589440 . T C 1937 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.01;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1970,222,0 chrIV 589456 . G C 1625 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.67;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1658,189,0 chrIV 589498 . T C 1097 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.31;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1130,126,0 chrIV 589643 . T G 307 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=17.1950;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=8.77;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:39:340,39,0 chrIV 589702 . C G 153.06 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=7.29;SB=-1.901e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:186,21,0 chrIV 589875 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.24;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1167,126,0 chrIV 590204 . G C 2925 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.20;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:2958,342,0 chrIV 590328 . A G 4759.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.8386;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.42;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4759,549,0 chrIV 590576 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.09;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3763,420,0 chrIV 590658 . T G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=7.539;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=0.911;QD=20.57;ReadPosRankSum=2.383;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3078,351,0 chrIV 590664 . T C 2979 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.60;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3012,342,0 chrIV 590870 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.55;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3360,378,0 chrIV 590898 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=6.920;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.208;QD=22.19;ReadPosRankSum=2.416;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3284,366,0 chrIV 590979 . G T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.79;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4074,447,0 chrIV 591021 . A G 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=197;Dels=0.00;FS=2.925;HaplotypeScore=8.9488;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.268;QD=21.90;ReadPosRankSum=2.400;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4315,489,0 chrIV 591069 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.31;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3567,387,0 chrIV 591129 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=148;Dels=0.00;FS=8.217;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.025;QD=22.45;ReadPosRankSum=2.399;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3323,387,0 chrIV 591187 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.42;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3520,399,0 chrIV 591205 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.10;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3811,420,0 chrIV 591234 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0876;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.454;QD=20.80;ReadPosRankSum=1.691;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3495,399,0 chrIV 591737 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.705;QD=21.15;ReadPosRankSum=2.388;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2550,294,0 chrIV 591909 . G C 3603.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.80;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3603,405,0 chrIV 592009 . G A 4141.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=23.13;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4141,441,0 chrIV 592050 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.14;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3431,387,0 chrIV 592072 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.76;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3250,381,0 chrIV 592149 . A G 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=106;Dels=0.00;FS=2.600;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.334;QD=14.17;ReadPosRankSum=2.934;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:3,103:106:99:1535,180,0 chrIV 592185 . C T 1201 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=64.1081;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=12.13;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1234,135,0 chrIV 592224 . A G 1273 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=13.54;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1306,150,0 chrIV 592269 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.19;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2936,315,0 chrIV 592535 . G A 3983.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.897;DP=428;Dels=0.00;FS=5.429;HaplotypeScore=19.8159;MLEAC=1;MLEAF=0.500;MQ=42.53;MQ0=0;MQRankSum=5.117;QD=9.31;ReadPosRankSum=6.706;SB=-2.343e+03 GT:AD:DP:GQ:PL 0/1:199,229:428:99:3983,0,488 chrIV 592551 . C A 4984.01 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.01;FS=0.000;HaplotypeScore=56.2144;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=12.10;SB=-5.006e+03 GT:AD:DP:GQ:PL 1/1:0,406:406:99:4984,540,0 chrIV 592563 . C A 4460.01 filter AC=2;AF=1.00;AN=2;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=46.5491;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=11.52;SB=-4.390e+03 GT:AD:DP:GQ:PL 1/1:0,387:387:99:4460,477,0 chrIV 592571 . G A 907.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.907;DP=395;Dels=0.00;FS=14.565;HaplotypeScore=116.5776;MLEAC=1;MLEAF=0.500;MQ=41.33;MQ0=0;MQRankSum=-4.956;QD=2.30;ReadPosRankSum=-7.928;SB=-5.720e+02 GT:AD:DP:GQ:PL 0/1:293,102:395:99:937,0,2479 chrIV 592574 . A G 2144.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.233;DP=399;Dels=0.00;FS=24.482;HaplotypeScore=113.9699;MLEAC=1;MLEAF=0.500;MQ=41.72;MQ0=0;MQRankSum=9.796;QD=5.37;ReadPosRankSum=8.418;SB=-8.450e+02 GT:AD:DP:GQ:PL 0/1:229,168:399:99:2174,0,1224 chrIV 592575 . C A 1120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.151;DP=388;Dels=0.00;FS=41.058;HaplotypeScore=106.3014;MLEAC=1;MLEAF=0.500;MQ=41.94;MQ0=0;MQRankSum=-12.542;QD=2.89;ReadPosRankSum=-9.814;SB=-2.046e+03 GT:AD:DP:GQ:PL 0/1:181,207:388:99:1150,0,2374 chrIV 592587 . C A 735.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.740;DP=363;Dels=0.00;FS=47.340;HaplotypeScore=9.7811;MLEAC=1;MLEAF=0.500;MQ=44.86;MQ0=0;MQRankSum=-12.854;QD=2.02;ReadPosRankSum=-14.815;SB=-1.176e+03 GT:AD:DP:GQ:PL 0/1:209,154:363:99:765,0,3019 chrIV 592731 . G A 4328.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=23.91;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4328,474,0 chrIV 592897 . T C 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=130;Dels=0.00;FS=8.396;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.623;QD=19.28;ReadPosRankSum=2.373;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2539,291,0 chrIV 593125 . T A 2002 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.24;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2035,228,0 chrIV 593192 . T C 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.332;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=0.633;QD=19.39;ReadPosRankSum=-0.466;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2050,234,0 chrIV 593211 . A C 2527 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=19.90;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2560,288,0 chrIV 593254 . T A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=177.2251;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.32;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3811,426,0 chrIV 593313 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.30;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4072,427,0 chrIV 593316 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=6.062;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.214;QD=17.40;ReadPosRankSum=1.699;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:3689,411,0 chrIV 593358 . T C 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.355;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.6099;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=2.048;QD=17.13;ReadPosRankSum=1.044;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:2688,270,0 chrIV 593463 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.7296;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.64;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:3969,465,0 chrIV 593517 . T G 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=228;Dels=0.00;FS=4.077;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.762;QD=19.90;ReadPosRankSum=1.701;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,224:228:99:4537,510,0 chrIV 593630 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.065;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.260;QD=18.59;ReadPosRankSum=1.645;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3026,342,0 chrIV 593642 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.62;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2835,324,0 chrIV 593760 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=210;Dels=0.01;FS=3.008;HaplotypeScore=7.3997;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.279;QD=17.34;ReadPosRankSum=1.714;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:3642,405,0 chrIV 593762 . T C 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.613;DP=214;Dels=0.00;FS=17.859;HaplotypeScore=11.5882;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.856;QD=16.96;ReadPosRankSum=3.519;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:7,207:214:99:3630,411,0 chrIV 593816 . T A 4668.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.0594;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.75;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4668,525,0 chrIV 593852 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=213;Dels=0.00;FS=4.011;HaplotypeScore=13.1082;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.472;QD=21.17;ReadPosRankSum=1.649;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,209:213:99:4510,507,0 chrIV 593903 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.2898;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.99;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4419,477,0 chrIV 594035 . T A 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=221;Dels=0.00;FS=4.413;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.183;QD=21.53;ReadPosRankSum=1.716;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4759,528,0 chrIV 594402 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.30;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4240,483,0 chrIV 594471 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DP=184;Dels=0.00;FS=5.102;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.701;QD=21.84;ReadPosRankSum=0.816;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:99:4019,437,0 chrIV 594612 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.2677;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.83;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4166,474,0 chrIV 594621 . A T 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=192;Dels=0.00;FS=5.947;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.937;QD=20.63;ReadPosRankSum=2.922;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3961,435,0 chrIV 594738 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=6.563;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.515;QD=23.30;ReadPosRankSum=2.404;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2573,285,0 chrIV 594777 . C G 2959 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.12;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2992,336,0 chrIV 594843 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.598;QD=20.89;ReadPosRankSum=1.705;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2769,312,0 chrIV 594975 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.25;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2604,288,0 chrIV 595029 . A G 2543 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.92;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2576,294,0 chrIV 595047 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.27;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2639,294,0 chrIV 595104 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.68;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2139,225,0 chrIV 595122 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.08;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2323,255,0 chrIV 595269 . C G 3008 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.49;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3041,345,0 chrIV 595275 . G T 2931 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.20;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2964,321,0 chrIV 595314 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.35;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2595,279,0 chrIV 595521 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.72;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2229,246,0 chrIV 595528 . A G 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=112;Dels=0.00;FS=9.150;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-0.252;QD=18.78;ReadPosRankSum=2.937;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2136,240,0 chrIV 595537 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-0.962;QD=19.18;ReadPosRankSum=1.700;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2124,243,0 chrIV 595587 . T C 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=128;Dels=0.00;FS=6.096;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-0.128;QD=17.56;ReadPosRankSum=2.944;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:3,123:128:99:2281,255,0 chrIV 595597 . G T 2290 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.74;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2323,249,0 chrIV 595662 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.299;QD=21.15;ReadPosRankSum=1.702;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2508,288,0 chrIV 595824 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.37;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3467,387,0 chrIV 596055 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.359;QD=22.16;ReadPosRankSum=1.697;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4322,492,0 chrIV 596115 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.976;QD=21.34;ReadPosRankSum=1.633;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3714,426,0 chrIV 596262 . A G 4404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.254;QD=22.94;ReadPosRankSum=1.873;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:4404,501,0 chrIV 596681 . A G 1972 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2005,228,0 chrIV 596770 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.20;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1089,120,0 chrIV 596811 . T C 958 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.77;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:991,111,0 chrIV 596817 . T C 856 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.88;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:889,102,0 chrIV 596866 . T A 1457 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=22.08;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1490,162,0 chrIV 596913 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=22.81;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2223,243,0 chrIV 596960 . A G 2598 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=23.62;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2631,294,0 chrIV 597058 . C T 1283 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.04;FS=0.000;HaplotypeScore=10.2566;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=12.70;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1316,144,0 chrIV 597096 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=136.1306;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=14.65;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2114,231,0 chrIV 597114 . T C 1989 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=13.09;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2022,231,0 chrIV 597139 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=15.87;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2525,285,0 chrIV 597218 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.77;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3266,366,0 chrIV 597383 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.54;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3248,348,0 chrIV 597461 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=156;Dels=0.00;FS=2.901;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.473;QD=21.93;ReadPosRankSum=2.417;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,149:156:99:3421,399,0 chrIV 597488 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.43;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3768,423,0 chrIV 597506 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=184;Dels=0.00;FS=5.122;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.375;QD=20.81;ReadPosRankSum=3.355;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:3829,444,0 chrIV 597668 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.15;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4167,497,0 chrIV 597689 . C T 4377.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.45;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4377,483,0 chrIV 597800 . T C 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=176;Dels=0.00;FS=6.770;HaplotypeScore=8.1766;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.537;QD=22.78;ReadPosRankSum=2.408;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4010,456,0 chrIV 598134 . A T 1618 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.57;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1651,186,0 chrIV 598184 . T G 1647 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.96;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1680,195,0 chrIV 598232 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.91;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1428,153,0 chrIV 598266 . T G 1031 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.43;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1064,123,0 chrIV 598369 . A G 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.262;QD=19.27;ReadPosRankSum=2.355;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1035,117,0 chrIV 598426 . A C 798 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=35.7115;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.73;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:831,93,0 chrIV 598427 . G A 778 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=35.7115;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=17.68;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:811,90,0 chrIV 598443 . T C 613 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=14.95;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:75:646,75,0 chrIV 598491 . C T 1068 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.74;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1101,123,0 chrIV 598593 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.89;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1562,177,0 chrIV 598655 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.34;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1399,144,0 chrIV 598656 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.78;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1299,144,0 chrIV 598729 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.96;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2514,270,0 chrIV 598749 . A G 2452 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.92;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2485,282,0 chrIV 599029 . G C 2891 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.90;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2924,333,0 chrIV 599314 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.87;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2823,315,0 chrIV 599328 . T C 3017 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.02;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3050,348,0 chrIV 599598 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=24.35;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3198,345,0 chrIV 599648 . C T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.69;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3403,375,0 chrIV 599654 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.58;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3348,363,0 chrIV 599820 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.05;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2701,315,0 chrIV 599964 . C G 4659.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.73;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4659,531,0 chrIV 600037 . T C 5422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=233;Dels=0.00;FS=2.798;HaplotypeScore=16.0594;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.995;QD=23.27;ReadPosRankSum=2.418;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5422,627,0 chrIV 600120 . T C 5075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=250;Dels=0.00;FS=3.548;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.635;QD=20.30;ReadPosRankSum=1.704;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5075,576,0 chrIV 600127 . T A 4627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=227;Dels=0.00;FS=3.693;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.542;QD=20.38;ReadPosRankSum=1.671;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4627,498,0 chrIV 600177 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.55;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4223,471,0 chrIV 600257 . C T 5676.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.70;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5676,610,0 chrIV 600479 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=104.0254;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.54;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2261,255,0 chrIV 600492 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.59;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1992,216,0 chrIV 600632 . A G 1818 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.31;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1851,204,0 chrIV 600722 . T C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.411;QD=20.74;ReadPosRankSum=1.703;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2480,273,0 chrIV 600764 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=110.2048;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=18.17;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2268,246,0 chrIV 600792 . G T 2000 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=15.75;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2033,222,0 chrIV 600978 . A T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=22.47;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3280,351,0 chrIV 601035 . T A 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DP=87;Dels=0.00;FS=43.470;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=43.01;MQ0=0;MQRankSum=0.872;QD=0.87;ReadPosRankSum=-4.437;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,17:87:99:106,0,753 chrIV 601038 . T A 194.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DP=84;Dels=0.00;FS=38.632;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=43.04;MQ0=0;MQRankSum=2.147;QD=2.31;ReadPosRankSum=-4.624;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,23:84:99:224,0,671 chrIV 601041 . A G 291.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;DP=89;Dels=0.00;FS=34.123;HaplotypeScore=16.9366;MLEAC=1;MLEAF=0.500;MQ=44.86;MQ0=0;MQRankSum=3.574;QD=3.27;ReadPosRankSum=0.853;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,28:89:99:321,0,657 chrIV 601053 . T C 309.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801;DP=89;Dels=0.00;FS=22.999;HaplotypeScore=19.8128;MLEAC=1;MLEAF=0.500;MQ=53.99;MQ0=0;MQRankSum=1.908;QD=3.47;ReadPosRankSum=-1.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,26:89:99:339,0,907 chrIV 601057 . A C 328.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.864;DP=113;Dels=0.00;FS=0.836;HaplotypeScore=19.1686;MLEAC=1;MLEAF=0.500;MQ=53.53;MQ0=0;MQRankSum=-1.407;QD=2.90;ReadPosRankSum=-3.721;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:67,45:113:99:358,0,1118 chrIV 601059 . C T 450.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.777;DP=124;Dels=0.00;FS=8.342;HaplotypeScore=9.6594;MLEAC=1;MLEAF=0.500;MQ=54.13;MQ0=0;MQRankSum=-0.502;QD=3.63;ReadPosRankSum=-3.298;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:74,50:124:99:480,0,1207 chrIV 601074 . C T 1374.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;DP=222;Dels=0.00;FS=61.670;HaplotypeScore=21.1302;MLEAC=1;MLEAF=0.500;MQ=54.58;MQ0=0;MQRankSum=0.733;QD=6.19;ReadPosRankSum=-4.337;SB=-9.220e+02 GT:AD:DP:GQ:PL 0/1:102,120:222:99:1404,0,1435 chrIV 601187 . G C 7178.01 filter AC=2;AF=1.00;AN=2;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=13.1947;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.89;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,378:380:99:7178,792,0 chrIV 601197 . C T 6657.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=17.75;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,372:375:99:6657,714,0 chrIV 601210 . T A 5731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=356;Dels=0.00;FS=4.841;HaplotypeScore=17.7118;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.257;QD=16.10;ReadPosRankSum=3.384;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:4,352:356:99:5731,654,0 chrIV 601542 . T A 372.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.645;DP=497;Dels=0.00;FS=11.095;HaplotypeScore=42.6840;MLEAC=1;MLEAF=0.500;MQ=57.65;MQ0=0;MQRankSum=-1.051;QD=0.75;ReadPosRankSum=-10.022;SB=-3.730e+02 GT:AD:DP:GQ:PL 0/1:376,121:497:99:402,0,6317 chrIV 602153 . T C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.699;QD=22.94;ReadPosRankSum=1.667;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2488,288,0 chrIV 602350 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.84;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3112,333,0 chrIV 602561 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.776;DP=135;Dels=0.00;FS=3.563;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.680;QD=22.68;ReadPosRankSum=-0.569;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3095,332,0 chrIV 602690 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=5.088;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.098;QD=20.55;ReadPosRankSum=1.708;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,141:145:99:3013,339,0 chrIV 602760 . G T 2997 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.72;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3030,336,0 chrIV 602876 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.4390;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.56;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2808,309,0 chrIV 603005 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=22.41;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2946,330,0 chrIV 603371 . A G 2520 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.8862;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2553,294,0 chrIV 603439 . A G 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.528;QD=23.62;ReadPosRankSum=1.691;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2064,240,0 chrIV 603579 . T A 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=85;Dels=0.00;FS=3.384;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.610;QD=21.38;ReadPosRankSum=1.651;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1850,207,0 chrIV 603643 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2655,291,0 chrIV 603685 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.90;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3660,408,0 chrIV 603743 . A G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.206;HaplotypeScore=6.8524;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.257;QD=24.07;ReadPosRankSum=1.636;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2657,306,0 chrIV 603839 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.61;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2388,264,0 chrIV 603991 . C A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=8.6061;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.92;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,140:145:99:3346,363,0 chrIV 604105 . T C 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.9608;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.339;QD=23.96;ReadPosRankSum=2.386;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4648,522,0 chrIV 604156 . G A 4694.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.8884;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.20;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4694,504,0 chrIV 604223 . G A 5707.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=6.7805;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.17;SB=-3.653e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:5707,633,0 chrIV 604439 . G A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.3232;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.76;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5178,564,0 chrIV 604670 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=172;Dels=0.00;FS=10.569;HaplotypeScore=5.5797;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.840;QD=19.62;ReadPosRankSum=2.421;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3374,404,0 chrIV 604674 . C T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.22;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3777,411,0 chrIV 604841 . T C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=100;Dels=0.00;FS=3.979;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.074;QD=22.07;ReadPosRankSum=1.559;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2240,246,0 chrIV 605066 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2824,318,0 chrIV 605187 . A G 2493 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4682;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2526,288,0 chrIV 605312 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.39;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2933,312,0 chrIV 605501 . T C 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.252;QD=21.56;ReadPosRankSum=2.397;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2038,234,0 chrIV 605519 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.83;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1932,210,0 chrIV 605558 . T C 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=6.520;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.510;QD=18.64;ReadPosRankSum=2.301;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1878,216,0 chrIV 605615 . G C 2032 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.32;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2065,231,0 chrIV 605618 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.37;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1870,210,0 chrIV 605672 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.78;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1912,207,0 chrIV 605693 . A G 1970 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.90;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2003,225,0 chrIV 605973 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.2539;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.64;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2349,255,0 chrIV 605980 . G C 2319 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.08;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2352,264,0 chrIV 606602 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2352,252,0 chrIV 606896 . T C 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.025;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.686;QD=22.26;ReadPosRankSum=1.624;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2170,252,0 chrIV 606952 . T G 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=6.128;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.042;QD=21.66;ReadPosRankSum=1.690;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1831,207,0 chrIV 607013 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=2;QD=19.24;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1418,156,0 chrIV 607313 . G A 2100 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.33;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2133,228,0 chrIV 607474 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2638,294,0 chrIV 607658 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.6839;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3050,330,0 chrIV 607745 . A T 2348 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.96;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2381,270,0 chrIV 607853 . A C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=3.073;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.584;QD=21.54;ReadPosRankSum=1.707;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3048,351,0 chrIV 607973 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.17;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2790,306,0 chrIV 608132 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.521;QD=22.50;ReadPosRankSum=1.704;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2800,330,0 chrIV 608224 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.124;QD=22.75;ReadPosRankSum=1.671;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2627,294,0 chrIV 608333 . T C 2044 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=21.52;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2077,231,0 chrIV 608348 . T A 1928 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=22.16;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1961,219,0 chrIV 608350 . T C 1858 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=21.36;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1891,216,0 chrIV 608354 . G A 1836 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=19.96;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1869,210,0 chrIV 608390 . T C 1919 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=19.00;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1952,222,0 chrIV 608456 . T G 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.732;QD=21.33;ReadPosRankSum=1.704;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2699,318,0 chrIV 608473 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.86;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2870,321,0 chrIV 608522 . T A 2439 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.39;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2472,279,0 chrIV 608546 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.62;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2044,234,0 chrIV 608616 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.96;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2679,297,0 chrIV 608768 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.426;QD=22.09;ReadPosRankSum=1.704;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2728,309,0 chrIV 608921 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.02;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1949,222,0 chrIV 609172 . A G 2682 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.54;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2715,306,0 chrIV 609209 . A T 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=4.216;HaplotypeScore=11.0410;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.102;QD=22.19;ReadPosRankSum=1.653;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2962,333,0 chrIV 609437 . T C 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.358;QD=22.41;ReadPosRankSum=1.713;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4034,456,0 chrIV 609602 . A T 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.9968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.281;QD=20.36;ReadPosRankSum=2.385;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3148,348,0 chrIV 609890 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.264;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6307;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.257;QD=22.71;ReadPosRankSum=1.638;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3361,351,0 chrIV 609926 . T C 4411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.010;QD=24.24;ReadPosRankSum=1.713;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4411,501,0 chrIV 609953 . T G 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.9302;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.630;QD=23.77;ReadPosRankSum=1.715;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4850,555,0 chrIV 610094 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.6360;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.52;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4326,492,0 chrIV 610122 . C G 5102.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.99;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5102,579,0 chrIV 610170 . A C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.161;DP=197;Dels=0.00;FS=2.944;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.219;QD=20.31;ReadPosRankSum=2.412;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4002,453,0 chrIV 610352 . C G 3982.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.7367;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.89;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3982,444,0 chrIV 610391 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.363;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.260;QD=22.01;ReadPosRankSum=1.575;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3433,384,0 chrIV 610418 . G C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.41;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3619,405,0 chrIV 610515 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.16;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3545,396,0 chrIV 610570 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.32;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3624,402,0 chrIV 610717 . A G 4027.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2744;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.69;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4027,468,0 chrIV 610896 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.1528;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.99;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4055,447,0 chrIV 611004 . C T 4902.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5993;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.88;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4902,543,0 chrIV 611056 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=157;Dels=0.00;FS=9.200;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.317;QD=21.94;ReadPosRankSum=3.403;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3445,387,0 chrIV 611082 . G C 2355 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.98;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2388,276,0 chrIV 611092 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=17.99;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2569,282,0 chrIV 611095 . A T 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=3.165;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-1.466;QD=17.59;ReadPosRankSum=1.587;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2548,279,0 chrIV 611178 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=189;Dels=0.00;FS=6.081;HaplotypeScore=8.2128;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.431;QD=22.17;ReadPosRankSum=2.963;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4190,480,0 chrIV 611253 . G T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=24.04;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4327,465,0 chrIV 611282 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.943;DP=164;Dels=0.00;FS=2.035;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-0.410;QD=22.01;ReadPosRankSum=1.391;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3610,376,0 chrIV 611442 . T A 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.609;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.052;QD=22.24;ReadPosRankSum=1.711;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3625,405,0 chrIV 611460 . G C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.85;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3315,387,0 chrIV 611584 . A T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.5784;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.09;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3396,378,0 chrIV 611602 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=136;Dels=0.00;FS=13.596;HaplotypeScore=4.9865;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.823;QD=23.28;ReadPosRankSum=3.368;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:3199,360,0 chrIV 611634 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.1373;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.49;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3204,357,0 chrIV 611678 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=24.72;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3807,426,0 chrIV 611706 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=168;Dels=0.00;FS=10.352;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.066;QD=23.04;ReadPosRankSum=2.922;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3870,453,0 chrIV 611863 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.17;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2450,273,0 chrIV 611871 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.51;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2421,267,0 chrIV 611969 . G C 1361 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.87;MQ0=0;QD=18.39;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1394,165,0 chrIV 612078 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.00;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1185,129,0 chrIV 612294 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.82;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1626,177,0 chrIV 612305 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.40;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1726,186,0 chrIV 612357 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.68;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1745,198,0 chrIV 612573 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.13;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3146,345,0 chrIV 612828 . G T 2771 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2804,312,0 chrIV 613325 . T C 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8764;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=0.357;QD=21.92;ReadPosRankSum=1.677;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1414,165,0 chrIV 613362 . T C 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.295;QD=24.54;ReadPosRankSum=1.696;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2364,273,0 chrIV 613386 . T G 2602 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6135;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.32;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2635,303,0 chrIV 613520 . T C 3135 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.55;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3168,357,0 chrIV 613603 . G A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.35;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3923,438,0 chrIV 613630 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.43;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3491,390,0 chrIV 613738 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=16.33;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1829,201,0 chrIV 613744 . A G 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=110;Dels=0.00;FS=2.691;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.197;QD=17.09;ReadPosRankSum=2.405;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1913,216,0 chrIV 613810 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.046;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.443;QD=20.37;ReadPosRankSum=1.706;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2722,312,0 chrIV 613813 . A G 2692 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.39;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2725,309,0 chrIV 614005 . G C 2844 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=23.12;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2877,324,0 chrIV 614064 . T C 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=1.641;QD=16.73;ReadPosRankSum=1.671;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1940,219,0 chrIV 614066 . A C 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;MQRankSum=-0.619;QD=16.40;ReadPosRankSum=1.670;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1870,213,0 chrIV 614090 . C T 1550 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=14.09;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1583,174,0 chrIV 614091 . A T 1537 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=14.10;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1570,174,0 chrIV 614093 . T C 1604 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.541;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=-0.935;QD=14.19;ReadPosRankSum=1.671;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1637,186,0 chrIV 614205 . G T 2283 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.17;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2316,264,0 chrIV 614223 . G T 1989 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=17.60;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2022,231,0 chrIV 614235 . T C 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=0.015;QD=18.94;ReadPosRankSum=1.703;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2287,264,0 chrIV 614280 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=-1.412;QD=18.97;ReadPosRankSum=1.674;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2291,264,0 chrIV 614321 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=23.44;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2729,297,0 chrIV 614348 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.26;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2475,279,0 chrIV 614483 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.3128;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.41;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3519,405,0 chrIV 614534 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=154;Dels=0.00;FS=5.564;HaplotypeScore=10.9526;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.431;QD=21.56;ReadPosRankSum=2.915;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3321,378,0 chrIV 614618 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.64;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3962,447,0 chrIV 614729 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=180;Dels=0.00;FS=7.026;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.556;QD=22.14;ReadPosRankSum=2.354;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3986,462,0 chrIV 614789 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=6.819;HaplotypeScore=13.2311;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=2.380;QD=21.44;ReadPosRankSum=2.394;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3795,435,0 chrIV 614940 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=187;Dels=0.00;FS=3.032;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.689;QD=20.22;ReadPosRankSum=2.383;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,182:187:99:3782,438,0 chrIV 615060 . T C 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=8.109;HaplotypeScore=11.9840;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.704;QD=20.84;ReadPosRankSum=2.372;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3959,444,0 chrIV 615092 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.92;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3443,390,0 chrIV 615095 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=18.24;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3320,372,0 chrIV 615114 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.75;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3245,354,0 chrIV 615161 . T A 3165 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.82;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3198,357,0 chrIV 615243 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.968;QD=21.45;ReadPosRankSum=1.707;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2950,345,0 chrIV 615258 . T C 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.199;QD=20.88;ReadPosRankSum=1.708;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3019,327,0 chrIV 615319 . A C 3090 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.6728;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.07;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3123,348,0 chrIV 615413 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.385;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-0.482;QD=21.15;ReadPosRankSum=1.680;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2846,333,0 chrIV 615431 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=21.55;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2813,309,0 chrIV 615437 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.50;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2510,291,0 chrIV 615449 . A T 2515 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.65;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2548,282,0 chrIV 615581 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.02;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3036,327,0 chrIV 615630 . A C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.341;QD=20.53;ReadPosRankSum=1.703;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2476,285,0 chrIV 615649 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.39;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2322,261,0 chrIV 615735 . C G 2279 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.30;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2312,264,0 chrIV 615798 . T C 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.850;QD=20.81;ReadPosRankSum=1.699;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2260,264,0 chrIV 615816 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.15;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2580,279,0 chrIV 615959 . A G 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.680;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=0.195;QD=19.02;ReadPosRankSum=1.706;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2562,291,0 chrIV 615973 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=17.78;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2505,279,0 chrIV 615975 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.56;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2650,288,0 chrIV 616141 . A T 2736 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.06;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2769,306,0 chrIV 616214 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.9520;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.52;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2495,267,0 chrIV 616434 . C T 4164.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4938;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.07;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4164,462,0 chrIV 616510 . G T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1860;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.92;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4306,465,0 chrIV 616559 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.21;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3167,351,0 chrIV 616624 . G T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.44;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3475,387,0 chrIV 616689 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=6.597;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.445;QD=21.83;ReadPosRankSum=1.712;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3711,423,0 chrIV 616883 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.29;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1736,192,0 chrIV 617153 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=140;Dels=0.00;FS=8.764;HaplotypeScore=11.1461;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=2.096;QD=18.81;ReadPosRankSum=0.929;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2666,303,0 chrIV 617367 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.23;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2440,267,0 chrIV 617371 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1569;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.36;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2496,279,0 chrIV 617421 . A C 2423 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.64;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2456,282,0 chrIV 617714 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=3.793;HaplotypeScore=13.1633;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.500;QD=19.87;ReadPosRankSum=1.714;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3894,441,0 chrIV 617915 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.9069;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.77;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3688,399,0 chrIV 618001 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.54;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3649,414,0 chrIV 618471 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.46;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2966,321,0 chrIV 618809 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.76;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3505,384,0 chrIV 619063 . T C 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=160;Dels=0.00;FS=3.027;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.334;QD=19.11;ReadPosRankSum=2.387;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3091,348,0 chrIV 619185 . T G 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=112;Dels=0.00;FS=3.424;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.260;QD=21.31;ReadPosRankSum=1.701;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2420,273,0 chrIV 619315 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.5441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3551,396,0 chrIV 619456 . C A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.49;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3876,426,0 chrIV 619532 . T C 2854 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.30;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2887,324,0 chrIV 619600 . T G 3026 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.17;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3059,357,0 chrIV 619621 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.32;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3283,360,0 chrIV 619697 . G A 2397 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=20.84;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2430,273,0 chrIV 619698 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=22.09;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2551,273,0 chrIV 619787 . C G 2835 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.68;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2868,327,0 chrIV 619809 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=21.92;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2663,297,0 chrIV 619843 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=18.91;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2170,249,0 chrIV 619866 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;QD=17.35;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1612,186,0 chrIV 619881 . G T 1229 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=15.76;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1262,138,0 chrIV 619883 . A G 1064 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;MQRankSum=-1.732;QD=14.99;ReadPosRankSum=1.683;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1097,129,0 chrIV 619885 . G C 1016 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=14.51;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1049,129,0 chrIV 619900 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;QD=13.18;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:850,99,0 chrIV 619918 . T C 1002 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.74;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1035,120,0 chrIV 619930 . G A 878 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;QD=14.88;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:911,102,0 chrIV 619942 . A T 748 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=16.26;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:781,87,0 chrIV 619943 . A C 723 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=15.72;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:756,87,0 chrIV 620075 . T G 366 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;QD=13.07;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:51:399,51,0 chrIV 620079 . G A 347 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=15.77;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:380,48,0 chrIV 620087 . A G 341 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=17.05;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:374,48,0 chrIV 620108 . T C 354 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=18.63;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:48:387,48,0 chrIV 620254 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=24.03;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1619,177,0 chrIV 620304 . C G 2094 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=24.35;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2127,237,0 chrIV 620379 . A G 2119 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=23.81;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2152,243,0 chrIV 620438 . A C 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=109;Dels=0.00;FS=6.914;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=0.057;QD=19.30;ReadPosRankSum=2.336;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2137,240,0 chrIV 620447 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.74;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2185,240,0 chrIV 620486 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.35;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2529,273,0 chrIV 620622 . A G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.595;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.808;QD=23.00;ReadPosRankSum=1.706;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3161,363,0 chrIV 620650 . G C 2760 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=20.44;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2793,315,0 chrIV 620655 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=3.034;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-0.551;QD=19.46;ReadPosRankSum=2.395;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2679,303,0 chrIV 620686 . T A 2846 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.76;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2879,321,0 chrIV 620832 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.72;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2896,324,0 chrIV 620963 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=18.31;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1663,189,0 chrIV 621009 . T C 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.627;QD=14.85;ReadPosRankSum=1.216;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1429,162,0 chrIV 621064 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.23;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2834,318,0 chrIV 621144 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4170;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.45;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3435,402,0 chrIV 621513 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.70;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3092,348,0 chrIV 621542 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.9621;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.51;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3068,330,0 chrIV 621550 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.4259;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.13;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2711,306,0 chrIV 621579 . T C 1798 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=16.50;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1831,207,0 chrIV 621798 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.53;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2551,273,0 chrIV 621946 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.66;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1940,213,0 chrIV 621990 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.83;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1670,183,0 chrIV 622162 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.59;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1953,216,0 chrIV 622252 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.06;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2523,270,0 chrIV 622585 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.23;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3234,366,0 chrIV 622651 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=146;Dels=0.00;FS=3.005;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.958;QD=22.56;ReadPosRankSum=2.416;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3294,372,0 chrIV 622798 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3320,375,0 chrIV 623085 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.6194;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.98;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4172,471,0 chrIV 623668 . A C 2656 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.32;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2689,312,0 chrIV 623798 . T C 2836 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2869,324,0 chrIV 623886 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.39;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2886,315,0 chrIV 623966 . C A 2561 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.82;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2594,291,0 chrIV 624031 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.437;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.333;QD=21.22;ReadPosRankSum=1.707;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2983,345,0 chrIV 624268 . G A 4737.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.8067;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.34;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4737,522,0 chrIV 624319 . A G 4216.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.62;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4216,489,0 chrIV 624454 . T C 5165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=230;Dels=0.00;FS=7.134;HaplotypeScore=19.1104;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.230;QD=22.46;ReadPosRankSum=2.417;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:5165,582,0 chrIV 624499 . T C 5048.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.84;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5048,564,0 chrIV 624583 . T C 3175 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.75;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3208,360,0 chrIV 624648 . A G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6975;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.464;QD=18.37;ReadPosRankSum=1.710;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:2898,330,0 chrIV 624708 . A C 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.198;QD=17.28;ReadPosRankSum=2.407;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2003,231,0 chrIV 624733 . G T 2329 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.91;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2362,270,0 chrIV 624930 . T C 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=135.6166;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.111;QD=18.77;ReadPosRankSum=1.708;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2699,309,0 chrIV 624969 . T G 3312.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5517;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.44;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3312,387,0 chrIV 625173 . A G 3174 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.09;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3207,366,0 chrIV 625250 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.43;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3300,366,0 chrIV 625533 . T A 5380.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.3620;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5380,588,0 chrIV 625729 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.8708;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4282,480,0 chrIV 625867 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2745,300,0 chrIV 627107 . G A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.70;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3958,438,0 chrIV 627578 . G A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8800;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.01;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4130,453,0 chrIV 627839 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=2.975;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.463;QD=21.67;ReadPosRankSum=2.414;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3002,345,0 chrIV 627887 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.127;QD=20.90;ReadPosRankSum=1.676;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,122:129:99:2729,312,0 chrIV 627941 . A G 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.197;QD=21.28;ReadPosRankSum=1.638;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2374,264,0 chrIV 628785 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=138;Dels=0.00;FS=2.575;HaplotypeScore=8.2308;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.022;QD=21.38;ReadPosRankSum=2.949;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:2983,336,0 chrIV 628915 . C T 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=0.786;QD=19.32;ReadPosRankSum=-0.479;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2661,253,0 chrIV 628932 . T C 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.583;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.9265;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=0.796;QD=19.25;ReadPosRankSum=2.006;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2382,231,0 chrIV 628955 . A G 2621 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.27;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2654,303,0 chrIV 629029 . T G 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=4.940;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.674;QD=19.02;ReadPosRankSum=1.679;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2524,288,0 chrIV 629044 . G T 2248 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.05;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2281,252,0 chrIV 629055 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.93;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1926,216,0 chrIV 629110 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=17.31;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1504,162,0 chrIV 629111 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=17.59;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1546,168,0 chrIV 629128 . T C 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.827;DP=91;Dels=0.00;FS=7.653;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;MQRankSum=-1.205;QD=14.21;ReadPosRankSum=2.342;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1326,150,0 chrIV 629135 . G T 1489 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=17.31;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1522,168,0 chrIV 629383 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=22.93;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1615,183,0 chrIV 629422 . A G 1995 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=24.04;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2028,231,0 chrIV 629477 . A G 1681 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=20.75;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1714,198,0 chrIV 629481 . A G 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;MQRankSum=0.110;QD=20.87;ReadPosRankSum=1.644;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1682,195,0 chrIV 629492 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=77;Dels=0.00;FS=2.804;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.849;QD=21.29;ReadPosRankSum=2.002;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1672,172,0 chrIV 629523 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.81;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1561,177,0 chrIV 629614 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=22.54;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2287,255,0 chrIV 629639 . T C 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=112;Dels=0.00;FS=3.014;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;MQRankSum=0.802;QD=19.43;ReadPosRankSum=2.362;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2209,258,0 chrIV 629643 . A G 1977 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=17.97;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2010,240,0 chrIV 629651 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=17.89;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1983,228,0 chrIV 629687 . A G 1294 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;QD=13.48;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1327,156,0 chrIV 629700 . C T 999 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;QD=12.81;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1032,117,0 chrIV 629701 . C T 994 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;QD=12.74;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1027,117,0 chrIV 629702 . G A 978 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=12.38;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1011,117,0 chrIV 629717 . A G 894 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=0;QD=10.40;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:927,108,0 chrIV 629724 . T A 1034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;MQRankSum=0.540;QD=11.12;ReadPosRankSum=1.658;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1067,117,0 chrIV 629797 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=139;Dels=0.03;FS=4.706;HaplotypeScore=15.1311;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.326;QD=20.23;ReadPosRankSum=1.628;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2845,315,0 chrIV 629850 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5598;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=20.95;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3238,366,0 chrIV 629998 . T A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.51;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3871,426,0 chrIV 630003 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=177;Dels=0.00;FS=8.880;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.370;QD=20.30;ReadPosRankSum=3.390;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3593,414,0 chrIV 630030 . C A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.01;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3582,396,0 chrIV 630064 . C T 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.349;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.5235;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=2.380;QD=20.96;ReadPosRankSum=-1.917;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:2,210:214:99:4486,475,0 chrIV 630138 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4286,465,0 chrIV 630449 . A G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.685;QD=21.51;ReadPosRankSum=1.607;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3023,345,0 chrIV 630548 . T C 3009 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3042,351,0 chrIV 630621 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=91;Dels=0.00;FS=11.799;HaplotypeScore=11.9188;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.610;QD=17.89;ReadPosRankSum=2.394;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:2,86:91:99:1661,192,0 chrIV 630831 . T C 883 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=79.6867;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=16.35;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:916,105,0 chrIV 630888 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.46;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1897,210,0 chrIV 631004 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.38;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2441,279,0 chrIV 631207 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.83;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2784,300,0 chrIV 631794 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4576,534,0 chrIV 632064 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=141;Dels=0.00;FS=2.573;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.486;QD=23.82;ReadPosRankSum=2.921;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:4,136:141:99:3358,375,0 chrIV 632397 . A G 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=129;Dels=0.00;FS=20.088;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.159;QD=22.89;ReadPosRankSum=3.334;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:4,123:129:99:2986,339,0 chrIV 632423 . T C 2791 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.26;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2824,321,0 chrIV 632835 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=4.187;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.486;QD=24.96;ReadPosRankSum=-1.159;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3494,378,0 chrIV 632899 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=121;Dels=0.00;FS=5.743;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.142;QD=20.89;ReadPosRankSum=2.909;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2561,303,0 chrIV 632937 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.29;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2630,297,0 chrIV 632958 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.89;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2352,264,0 chrIV 633191 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.41;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2631,282,0 chrIV 633231 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.31;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2264,252,0 chrIV 633837 . C T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.23;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4134,459,0 chrIV 633960 . G A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=19.2510;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.11;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4299,465,0 chrIV 633999 . G C 4059.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.18;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4059,474,0 chrIV 634044 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.9530;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.173;QD=21.57;ReadPosRankSum=1.678;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4163,474,0 chrIV 634116 . A G 4994.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.29;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4994,564,0 chrIV 634140 . A C 5160.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.6581;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.23;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,236:243:99:5160,591,0 chrIV 634191 . T C 5972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=265;Dels=0.00;FS=2.566;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.414;QD=22.54;ReadPosRankSum=2.422;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:2,262:265:99:5972,687,0 chrIV 634275 . T C 4404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=3.220;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.605;QD=22.94;ReadPosRankSum=1.678;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4404,504,0 chrIV 634593 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=149;Dels=0.00;FS=2.936;HaplotypeScore=14.3913;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.883;QD=22.87;ReadPosRankSum=2.285;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3407,387,0 chrIV 634632 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.80;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4237,468,0 chrIV 635008 . C T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.2769;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.32;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:5311,576,0 chrIV 635025 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=222;Dels=0.00;FS=6.951;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.536;QD=19.80;ReadPosRankSum=2.427;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4396,513,0 chrIV 635043 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.47;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4633,513,0 chrIV 635526 . A G 5529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=286;Dels=0.00;FS=2.571;HaplotypeScore=21.9386;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.518;QD=19.33;ReadPosRankSum=2.968;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:3,282:286:99:5529,645,0 chrIV 636051 . T C 4238.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=20.1227;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.84;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:4238,492,0 chrIV 636201 . T C 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=192;Dels=0.00;FS=5.883;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-0.212;QD=22.86;ReadPosRankSum=2.963;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:4390,492,0 chrIV 636237 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.66;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3671,414,0 chrIV 636465 . A C 3046 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.92;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3079,357,0 chrIV 636737 . A T 3097 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.1719;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.77;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3130,345,0 chrIV 637002 . A T 2765 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.60;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2798,297,0 chrIV 637177 . G T 3048 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.27;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3081,336,0 chrIV 637285 . A G 2406 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.49;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2439,276,0 chrIV 637305 . G A 2289 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.22;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2322,252,0 chrIV 637452 . A G 2419 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.26;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2452,279,0 chrIV 637715 . C G 2396 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2429,276,0 chrIV 638043 . G C 2206 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.47;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2239,252,0 chrIV 638098 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1666,189,0 chrIV 638176 . G T 2439 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.39;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2472,276,0 chrIV 638458 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.70;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3256,363,0 chrIV 638634 . G A 4866.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.2792;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.51;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4866,525,0 chrIV 638815 . C T 8566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.614;QD=24.20;ReadPosRankSum=-0.433;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:1,351:354:99:8566,948,0 chrIV 638842 . A G 7794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=350;Dels=0.00;FS=4.356;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.283;QD=22.27;ReadPosRankSum=1.673;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:1,348:350:99:7794,894,0 chrIV 639043 . C T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=24.3944;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=15.28;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:4110,465,0 chrIV 639205 . T A 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=3.680;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.668;QD=22.63;ReadPosRankSum=1.683;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3201,354,0 chrIV 639649 . T C 2311 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2344,267,0 chrIV 639896 . C T 212.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.67;SB=-5.096e+01 GT:AD:DP:GQ:PL 1/1:0,11:12:27:245,27,0 chrIV 640048 . C T 871 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:904,99,0 chrIV 640367 . A T 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=223;Dels=0.00;FS=3.527;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.251;QD=21.93;ReadPosRankSum=1.717;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4891,534,0 chrIV 640388 . G A 4778.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.33;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4778,546,0 chrIV 640463 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4706,516,0 chrIV 640565 . A G 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.7540;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.683;QD=22.95;ReadPosRankSum=2.790;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:4,199:205:99:4705,525,0 chrIV 640997 . T A 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=207;Dels=0.00;FS=4.409;HaplotypeScore=13.6078;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.364;QD=21.41;ReadPosRankSum=1.715;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4432,489,0 chrIV 641111 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.07;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4060,456,0 chrIV 641184 . T A 3120 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.97;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3153,357,0 chrIV 641285 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.70;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3664,396,0 chrIV 641507 . T G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=111;Dels=0.00;FS=2.998;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.130;QD=20.73;ReadPosRankSum=2.248;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2334,264,0 chrIV 641786 . T A 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.408;QD=22.81;ReadPosRankSum=1.657;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3204,345,0 chrIV 642149 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.01;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2587,282,0 chrIV 642326 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.2741;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=1.510;QD=22.81;ReadPosRankSum=2.392;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3900,447,0 chrIV 642569 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.17;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3653,420,0 chrIV 642572 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.09;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3703,405,0 chrIV 642698 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=15.6749;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.42;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3431,372,0 chrIV 643077 . T G 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=4.235;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=0.584;QD=20.59;ReadPosRankSum=1.712;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3623,405,0 chrIV 643082 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=21.63;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3655,396,0 chrIV 643127 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;QD=16.66;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2816,303,0 chrIV 643129 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=15.83;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2629,303,0 chrIV 643160 . A T 2319 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;MQRankSum=-1.523;QD=13.97;ReadPosRankSum=1.711;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2352,258,0 chrIV 643165 . G T 2268 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=14.45;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2301,249,0 chrIV 643167 . G A 2239 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=13.99;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2272,252,0 chrIV 643177 . A T 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=170;Dels=0.00;FS=14.414;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;MQRankSum=-0.087;QD=13.47;ReadPosRankSum=3.377;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:2323,258,0 chrIV 643256 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=2.600;HaplotypeScore=10.9497;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.658;QD=21.69;ReadPosRankSum=2.396;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3970,456,0 chrIV 643436 . C T 5502.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.55;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5502,597,0 chrIV 643602 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=185;Dels=0.00;FS=4.950;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.316;QD=20.76;ReadPosRankSum=3.337;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:3841,441,0 chrIV 643715 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.50;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3353,375,0 chrIV 643760 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.23;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2634,285,0 chrIV 643795 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2475,276,0 chrIV 643844 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.47;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2798,303,0 chrIV 643897 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.66;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2683,291,0 chrIV 643929 . T G 2461 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.68;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2494,294,0 chrIV 643973 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.70;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2767,303,0 chrIV 644054 . T C 2133 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.33;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2166,243,0 chrIV 644081 . A G 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.512;QD=19.71;ReadPosRankSum=1.653;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,87:91:99:1827,207,0 chrIV 644532 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.90;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2450,285,0 chrIV 644616 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.334;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.442;QD=19.25;ReadPosRankSum=1.709;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2997,345,0 chrIV 644629 . T A 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.9602;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-1.637;QD=21.30;ReadPosRankSum=1.637;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3143,348,0 chrIV 644966 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.55;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3364,363,0 chrIV 645246 . A G 944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=1;MQRankSum=-2.399;QD=19.27;ReadPosRankSum=2.348;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,47:49:99:977,114,0 chrIV 651672 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=19.06;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1844,201,0 chrIV 651714 . G C 2109 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=25.11;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2142,243,0 chrIV 651778 . C A 1999 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=24.08;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2032,228,0 chrIV 651813 . C T 2415 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=23.22;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2448,264,0 chrIV 651881 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.37;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2940,321,0 chrIV 651974 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.16;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2135,231,0 chrIV 652022 . T C 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=107;Dels=0.00;FS=2.926;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.569;QD=22.37;ReadPosRankSum=2.357;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2427,279,0 chrIV 652176 . A C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.462;QD=23.73;ReadPosRankSum=2.403;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3750,413,0 chrIV 652205 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.6478;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.585;QD=23.09;ReadPosRankSum=-0.563;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3763,420,0 chrIV 652907 . A T 1744 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=1;QD=20.28;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1777,192,0 chrIV 653010 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.46;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2379,261,0 chrIV 653150 . C T 2032 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.09;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2065,225,0 chrIV 653202 . G C 2474 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.70;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2507,282,0 chrIV 653208 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.98;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2676,291,0 chrIV 653246 . T C 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=6.888;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.859;QD=19.69;ReadPosRankSum=1.705;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2553,300,0 chrIV 653323 . T G 1158 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.78;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1191,135,0 chrIV 653336 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=7.4799;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=14.36;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:995,105,0 chrIV 653906 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=14.0320;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.57;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2600,288,0 chrIV 654086 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.75;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3372,372,0 chrIV 654167 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.23;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3500,399,0 chrIV 654179 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=178;Dels=0.00;FS=5.634;HaplotypeScore=8.8561;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.271;QD=20.02;ReadPosRankSum=2.949;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3563,402,0 chrIV 654341 . A G 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.371;DP=151;Dels=0.00;FS=21.926;HaplotypeScore=12.3460;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.016;QD=13.03;ReadPosRankSum=0.022;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:14,137:151:67:2001,67,0 chrIV 654377 . A G 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.846;DP=134;Dels=0.03;FS=4.481;HaplotypeScore=34.8228;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.454;QD=16.69;ReadPosRankSum=4.033;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:7,123:130:99:2269,216,0 chrIV 654502 . C A 1748 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.09;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1781,198,0 chrIV 654523 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.62;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1784,198,0 chrIV 654729 . A C 2741 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.26;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2774,315,0 chrIV 654780 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.17;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2277,249,0 chrIV 654798 . T C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-1.039;QD=17.69;ReadPosRankSum=1.642;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2067,234,0 chrIV 654890 . T G 3463.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.40;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3463,396,0 chrIV 655011 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=25.48;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4077,444,0 chrIV 655090 . A C 2455 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.92;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2488,285,0 chrIV 655316 . A T 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.648;DP=103;Dels=0.00;FS=77.722;HaplotypeScore=31.9630;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=0;MQRankSum=-3.488;QD=0.56;ReadPosRankSum=0.254;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,26:103:88:88,0,1030 chrIV 655473 . C G 1161 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.43;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1194,132,0 chrIV 655491 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=20.98;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1334,147,0 chrIV 656349 . T C 2844 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.31;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2877,324,0 chrIV 656666 . C T 4382.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4382,495,0 chrIV 656959 . A G 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=219;Dels=0.00;FS=2.577;HaplotypeScore=17.4502;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.389;QD=19.61;ReadPosRankSum=2.371;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4295,489,0 chrIV 657366 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.15;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1927,213,0 chrIV 657390 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.90;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1938,216,0 chrIV 657792 . A G 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.177;QD=20.92;ReadPosRankSum=1.699;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2250,258,0 chrIV 658420 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=24.49;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2555,270,0 chrIV 658436 . T G 2395 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.38;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2428,279,0 chrIV 658469 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.823;QD=18.02;ReadPosRankSum=2.389;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2213,255,0 chrIV 658478 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=18.70;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2371,255,0 chrIV 658643 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6328;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.77;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2765,294,0 chrIV 658682 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.46;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2372,267,0 chrIV 658775 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.03;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2700,294,0 chrIV 659198 . G T 2759 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.90;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2792,303,0 chrIV 659402 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.95;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2987,336,0 chrIV 659467 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.0065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2473,276,0 chrIV 659689 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.739;QD=24.45;ReadPosRankSum=1.708;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3545,399,0 chrIV 659864 . A T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.80;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3794,417,0 chrIV 659912 . G C 3116 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.42;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3149,369,0 chrIV 659970 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.914;QD=23.51;ReadPosRankSum=0.217;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3386,378,0 chrIV 660025 . G C 3104 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.71;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3137,357,0 chrIV 660107 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.94;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3759,411,0 chrIV 660131 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.21;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3296,372,0 chrIV 660155 . T A 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=8.175;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.153;QD=21.86;ReadPosRankSum=2.401;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3345,378,0 chrIV 660197 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.96;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3179,354,0 chrIV 660237 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4924;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.15;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2753,306,0 chrIV 660248 . T C 2619 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.46;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2652,294,0 chrIV 660411 . T C 2876 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.38;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2909,333,0 chrIV 660498 . A G 3106 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.35;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3139,366,0 chrIV 660681 . C G 3495.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3495,396,0 chrIV 660748 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.28;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3965,447,0 chrIV 660773 . T C 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.664;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.857;QD=20.89;ReadPosRankSum=1.713;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:3928,453,0 chrIV 660788 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=3.334;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.617;QD=20.45;ReadPosRankSum=1.713;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3743,423,0 chrIV 660950 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.92;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3196,372,0 chrIV 661137 . A G 2443 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.53;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2476,285,0 chrIV 661159 . G T 2403 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=18.63;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2436,264,0 chrIV 661166 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=18.60;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2618,288,0 chrIV 661181 . T C 2489 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=17.53;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2522,288,0 chrIV 661358 . A T 5245.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.8972;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.31;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5245,570,0 chrIV 662378 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=3.231;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.725;QD=22.59;ReadPosRankSum=1.708;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3218,375,0 chrIV 662584 . G T 2674 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2707,297,0 chrIV 662835 . T C 2216 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2249,252,0 chrIV 662929 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.85;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2035,222,0 chrIV 663117 . A G 1368 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.43;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1401,159,0 chrIV 663783 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.73;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3751,402,0 chrIV 663915 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.7336;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.99;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3431,390,0 chrIV 663945 . A G 3060 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.55;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3093,360,0 chrIV 664347 . T G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=105;Dels=0.00;FS=5.880;HaplotypeScore=9.0101;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.298;QD=21.36;ReadPosRankSum=2.837;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2276,264,0 chrIV 664395 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.7670;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.92;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3395,366,0 chrIV 664438 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.94;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3489,396,0 chrIV 664456 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.474;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.526;QD=19.28;ReadPosRankSum=1.666;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3098,360,0 chrIV 664477 . T C 2873 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.03;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2906,327,0 chrIV 665204 . A G 2098 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.08;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2131,240,0 chrIV 665718 . C T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.20;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4013,429,0 chrIV 665841 . A G 4579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=201;Dels=0.00;FS=3.032;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.767;QD=22.78;ReadPosRankSum=1.698;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4579,522,0 chrIV 665997 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1055;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.37;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4071,441,0 chrIV 666003 . C G 3851.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.16;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3851,432,0 chrIV 666159 . G A 4688.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=21.8235;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.43;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4688,525,0 chrIV 666663 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=11.1113;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.255;QD=22.30;ReadPosRankSum=2.363;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3222,360,0 chrIV 666771 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.7707;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=15.98;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2494,285,0 chrIV 666947 . C G 2396 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.60;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2429,270,0 chrIV 666968 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.14;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1611,180,0 chrIV 666977 . A T 1480 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.62;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1513,168,0 chrIV 666994 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=17.49;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1537,171,0 chrIV 667027 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.00;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1895,207,0 chrIV 667309 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.79;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2654,300,0 chrIV 667355 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0227;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.41;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2959,321,0 chrIV 667469 . A T 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.322;QD=19.20;ReadPosRankSum=1.671;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2203,246,0 chrIV 667473 . T C 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=116;Dels=0.00;FS=12.519;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.452;QD=17.44;ReadPosRankSum=2.853;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2056,234,0 chrIV 667576 . T G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=99;Dels=0.00;FS=11.355;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-2.072;QD=23.68;ReadPosRankSum=2.929;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2377,273,0 chrIV 667644 . T C 2109 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.30;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2142,246,0 chrIV 667780 . T C 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=86;Dels=0.00;FS=6.389;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-2.305;QD=21.13;ReadPosRankSum=2.334;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1850,216,0 chrIV 667858 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.22;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2587,282,0 chrIV 668476 . C T 720 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=20.57;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:753,78,0 chrIV 668554 . A C 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;MQRankSum=1.662;QD=20.71;ReadPosRankSum=1.662;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1048,120,0 chrIV 668626 . T A 305 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=23.46;SB=-5.500e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:36:338,36,0 chrIV 668949 . T A 150.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.5806;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.171;QD=6.82;ReadPosRankSum=0.628;SB=-2.351e+02 GT:AD:DP:GQ:PL 1/1:2,20:22:21:183,21,0 chrIV 669005 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.30;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1321,147,0 chrIV 669064 . A G 2491 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.95;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2524,288,0 chrIV 669601 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;DP=151;Dels=0.00;FS=2.839;HaplotypeScore=12.8556;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.084;QD=22.48;ReadPosRankSum=-1.935;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:3395,363,0 chrIV 670000 . T C 2656 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.82;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2689,306,0 chrIV 670255 . C T 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.9048;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.164;QD=24.86;ReadPosRankSum=1.586;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4724,496,0 chrIV 670324 . T A 6275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=276;Dels=0.00;FS=3.840;HaplotypeScore=13.8094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.452;QD=22.74;ReadPosRankSum=1.707;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:6275,702,0 chrIV 670418 . A T 5394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.052;QD=24.08;ReadPosRankSum=1.717;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5394,600,0 chrIV 670636 . G C 3218.91 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.59;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3252,372,0 chrIV 670740 . T G 3364.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.56;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3364,393,0 chrIV 670771 . A C 3528.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.51;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3528,411,0 chrIV 671025 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.62;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2289,252,0 chrIV 671041 . T A 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=4.325;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-0.203;QD=18.25;ReadPosRankSum=1.638;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2059,222,0 chrIV 671079 . A G 1890 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-0.785;QD=16.15;ReadPosRankSum=1.703;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1923,216,0 chrIV 671086 . G C 1873 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=15.35;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:1906,213,0 chrIV 671087 . A T 1967 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-0.615;QD=15.86;ReadPosRankSum=1.676;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2000,213,0 chrIV 671207 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.02;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2103,225,0 chrIV 671226 . C G 1751 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.13;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1784,201,0 chrIV 671379 . T C 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.032;QD=22.38;ReadPosRankSum=1.697;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2249,261,0 chrIV 671460 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.93;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2830,321,0 chrIV 671508 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.35;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2984,327,0 chrIV 671820 . A G 2824 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.96;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2857,324,0 chrIV 671958 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=110;Dels=0.00;FS=3.747;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.160;QD=22.37;ReadPosRankSum=1.669;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2494,282,0 chrIV 671998 . A G 2477 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2510,285,0 chrIV 672097 . G T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.76;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3664,393,0 chrIV 672136 . T C 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.459;QD=22.13;ReadPosRankSum=1.703;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2644,300,0 chrIV 672351 . C T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.50;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3570,387,0 chrIV 672429 . T C 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=2.929;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.353;QD=22.37;ReadPosRankSum=2.412;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2919,333,0 chrIV 672752 . G A 5949.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.28;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5949,654,0 chrIV 672865 . A G 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=229;Dels=0.00;FS=3.019;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.925;QD=22.24;ReadPosRankSum=2.341;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:2,225:229:99:5093,588,0 chrIV 673035 . T A 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=4.965;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.559;QD=22.60;ReadPosRankSum=1.667;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3616,396,0 chrIV 673237 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.58;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1542,174,0 chrIV 673272 . A G 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=56;Dels=0.00;FS=2.785;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.202;QD=21.36;ReadPosRankSum=0.832;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:2,53:56:99:1229,141,0 chrIV 673544 . T C 2433 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2466,285,0 chrIV 673647 . G T 3124 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.03;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3157,345,0 chrIV 673716 . C G 3891.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=23.30;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3891,444,0 chrIV 673838 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.289;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.275;QD=23.56;ReadPosRankSum=-1.445;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3416,381,0 chrIV 673875 . A G 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=184;Dels=0.00;FS=2.957;HaplotypeScore=16.7915;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.348;QD=21.35;ReadPosRankSum=2.409;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,179:184:99:3928,450,0 chrIV 673951 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.250;QD=18.72;ReadPosRankSum=1.669;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,165:170:99:3215,360,0 chrIV 673957 . T C 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-1.273;QD=18.43;ReadPosRankSum=1.711;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3110,351,0 chrIV 673965 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=18.10;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3128,336,0 chrIV 673982 . A G 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=161;Dels=0.00;FS=10.690;HaplotypeScore=12.8042;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=1.396;QD=17.03;ReadPosRankSum=2.918;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:2775,315,0 chrIV 674236 . A G 4516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.2855;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=1.557;QD=22.58;ReadPosRankSum=1.680;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:4516,501,0 chrIV 674321 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=3.641;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.421;QD=21.10;ReadPosRankSum=1.685;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3156,351,0 chrIV 674365 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.592;QD=20.94;ReadPosRankSum=1.685;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3153,351,0 chrIV 674440 . C A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.99;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3321,366,0 chrIV 674458 . T G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.037;QD=19.11;ReadPosRankSum=1.682;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2708,303,0 chrIV 674459 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.862;QD=18.87;ReadPosRankSum=1.877;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2656,272,0 chrIV 674519 . A G 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=120;Dels=0.00;FS=6.133;HaplotypeScore=16.7703;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.308;QD=18.90;ReadPosRankSum=2.941;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:3,116:120:99:2301,264,0 chrIV 674711 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.93;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2464,276,0 chrIV 674716 . C G 2521 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.33;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2554,279,0 chrIV 674810 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.17;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2094,237,0 chrIV 674820 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=16.06;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2105,240,0 chrIV 674927 . A G 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.173;QD=19.52;ReadPosRankSum=1.704;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2492,294,0 chrIV 675634 . T C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.828;QD=21.45;ReadPosRankSum=1.961;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3079,348,0 chrIV 675790 . C A 2423 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.54;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2456,276,0 chrIV 675810 . T A 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.817;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.088;QD=18.72;ReadPosRankSum=1.703;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2242,255,0 chrIV 675833 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.62;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2236,261,0 chrIV 676252 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8006;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.65;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3313,378,0 chrIV 676621 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=3.384;HaplotypeScore=14.9749;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.089;QD=22.69;ReadPosRankSum=1.714;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4447,501,0 chrIV 677241 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.70;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3983,429,0 chrIV 677543 . A G 2988 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.81;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3021,333,0 chrIV 677624 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=141;Dels=0.00;FS=6.243;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.123;QD=20.89;ReadPosRankSum=2.361;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:2978,330,0 chrIV 677658 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.000;QD=20.79;ReadPosRankSum=1.704;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2611,303,0 chrIV 677835 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=50.9271;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=24.04;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1716,183,0 chrIV 678001 . T C 201.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=14.36;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:234,27,0 chrIV 678110 . G A 738 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.50;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:84:771,84,0 chrIV 678128 . C T 1111 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.96;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1144,126,0 chrIV 678156 . T C 1245 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.10;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1278,147,0 chrIV 678436 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.44;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2992,327,0 chrIV 678460 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.11;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3050,333,0 chrIV 678773 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.24;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2861,318,0 chrIV 678781 . T C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.796;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.126;QD=18.26;ReadPosRankSum=1.686;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2809,315,0 chrIV 678799 . T C 2728 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=17.95;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2761,312,0 chrIV 679210 . A G 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.667;DP=130;Dels=0.00;FS=8.018;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.616;QD=21.78;ReadPosRankSum=3.776;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:5,124:130:99:2864,324,0 chrIV 679260 . A G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=108;Dels=0.00;FS=6.655;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.656;QD=23.10;ReadPosRankSum=2.335;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2528,285,0 chrIV 679438 . A T 2207 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2240,243,0 chrIV 679489 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.97;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2675,300,0 chrIV 679624 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.654;QD=21.93;ReadPosRankSum=1.681;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3037,357,0 chrIV 679655 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.77;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3324,378,0 chrIV 680244 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.99;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3287,378,0 chrIV 680288 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.55;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3053,339,0 chrIV 680316 . C A 3023 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.98;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3056,327,0 chrIV 680423 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.924;QD=22.57;ReadPosRankSum=1.690;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3701,423,0 chrIV 680490 . G C 5454.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.31;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,229:234:99:5454,621,0 chrIV 680639 . A G 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.232;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.445;QD=21.55;ReadPosRankSum=1.675;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3944,459,0 chrIV 680727 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=20.34;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4170,453,0 chrIV 680751 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.37;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3504,390,0 chrIV 680772 . A T 3094 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.22;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3127,342,0 chrIV 680813 . A G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.477;QD=19.83;ReadPosRankSum=1.707;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2730,312,0 chrIV 681125 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.86;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3436,387,0 chrIV 681246 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=142;Dels=0.00;FS=6.301;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.376;QD=21.83;ReadPosRankSum=2.415;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3133,351,0 chrIV 681304 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.10;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2860,309,0 chrIV 681321 . A G 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.383;QD=19.26;ReadPosRankSum=2.414;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2710,309,0 chrIV 681664 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.32;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2668,291,0 chrIV 681745 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.14;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1785,198,0 chrIV 681895 . C T 961 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=17.16;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:994,108,0 chrIV 681918 . C T 793 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=15.86;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:826,90,0 chrIV 681959 . T A 530 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=12.33;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:63:563,63,0 chrIV 681960 . T G 521 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=12.12;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:63:554,63,0 chrIV 681992 . T C 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.213;QD=17.98;ReadPosRankSum=1.675;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1112,129,0 chrIV 682073 . G T 2326 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=21.94;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2359,258,0 chrIV 682085 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=17.70;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1838,207,0 chrIV 682094 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=15.53;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1602,183,0 chrIV 682121 . A C 1794 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.7623;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=15.20;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1827,213,0 chrIV 682178 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.72;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2754,303,0 chrIV 682188 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.84;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2929,324,0 chrIV 682303 . T C 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.6239;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.583;QD=21.71;ReadPosRankSum=1.715;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4450,498,0 chrIV 682509 . C G 2074 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.38;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2107,234,0 chrIV 682954 . A G 2715 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2748,309,0 chrIV 683240 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.08;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3831,423,0 chrIV 683520 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.0637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.106;QD=22.53;ReadPosRankSum=1.709;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3335,381,0 chrIV 683610 . T C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=4.949;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.139;QD=20.74;ReadPosRankSum=1.709;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3164,360,0 chrIV 683639 . T A 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=4.489;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=1.360;QD=22.48;ReadPosRankSum=1.709;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3350,357,0 chrIV 683768 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.86;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1935,219,0 chrIV 683805 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.45;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2003,219,0 chrIV 683834 . G C 2094 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.04;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2127,243,0 chrIV 683860 . T G 2046 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.6158;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.09;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2079,237,0 chrIV 683890 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=4.0519;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.70;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1772,195,0 chrIV 683918 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.78;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1734,189,0 chrIV 684395 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2676,294,0 chrIV 685013 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.72;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3269,366,0 chrIV 685085 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.50;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3465,372,0 chrIV 685091 . A T 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.720;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-1.661;QD=22.53;ReadPosRankSum=1.661;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3290,357,0 chrIV 685142 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.04;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3141,354,0 chrIV 685189 . A T 3116 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.74;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3149,345,0 chrIV 685461 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.08;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2881,330,0 chrIV 685512 . T C 2760 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.71;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2793,324,0 chrIV 685530 . A T 2818 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.42;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2851,318,0 chrIV 685531 . C G 2706 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.33;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2739,315,0 chrIV 685659 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.68;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3283,372,0 chrIV 685708 . T G 3140 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.75;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3173,354,0 chrIV 685788 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.56;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4225,468,0 chrIV 685822 . G A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.10;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4217,462,0 chrIV 685915 . T A 2640 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.4060;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.29;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2673,300,0 chrIV 686038 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.19;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2770,306,0 chrIV 686136 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.22;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1928,207,0 chrIV 686137 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.28;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1934,207,0 chrIV 686232 . T C 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.639;QD=21.77;ReadPosRankSum=1.639;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2471,285,0 chrIV 686560 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.86;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2110,246,0 chrIV 686865 . A G 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=2.753;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.421;QD=21.32;ReadPosRankSum=2.363;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2463,279,0 chrIV 686871 . T C 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=4.037;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.094;QD=20.22;ReadPosRankSum=1.671;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2358,276,0 chrIV 687006 . A T 2270 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.89;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2303,246,0 chrIV 687236 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=3.039;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.009;QD=21.91;ReadPosRankSum=2.340;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2969,336,0 chrIV 687255 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.95;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2864,318,0 chrIV 687279 . T G 2611 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.2098;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.13;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2644,297,0 chrIV 687427 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.577;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.935;QD=22.92;ReadPosRankSum=1.707;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3219,369,0 chrIV 687498 . T A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=25.11;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3641,393,0 chrIV 687533 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.101;DP=172;Dels=0.00;FS=4.494;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.164;QD=18.36;ReadPosRankSum=3.874;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:6,165:172:99:3191,366,0 chrIV 687534 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=172;Dels=0.00;FS=2.531;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=0.653;QD=19.89;ReadPosRankSum=2.288;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3421,381,0 chrIV 687589 . A C 4311.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.0554;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.14;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,209:214:99:4311,498,0 chrIV 687632 . G A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.09;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4113,444,0 chrIV 687643 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.42;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3710,423,0 chrIV 687745 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.412;DP=220;Dels=0.01;FS=5.242;HaplotypeScore=4.6580;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-1.506;QD=20.05;ReadPosRankSum=3.355;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:4,212:218:99:4412,501,0 chrIV 687746 . G A 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=218;Dels=0.00;FS=2.725;HaplotypeScore=7.5026;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.881;QD=20.83;ReadPosRankSum=2.290;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:4540,501,0 chrIV 687830 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=0.672;QD=21.99;ReadPosRankSum=2.419;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3496,396,0 chrIV 687932 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.41;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2074,234,0 chrIV 688093 . T G 959 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=13.90;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:992,117,0 chrIV 688177 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.27;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1969,225,0 chrIV 688353 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=3.042;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.087;QD=23.46;ReadPosRankSum=2.392;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3013,339,0 chrIV 688432 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.93;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3290,351,0 chrIV 688437 . C A 3112 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.70;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3145,342,0 chrIV 688474 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=179;Dels=0.00;FS=8.020;HaplotypeScore=11.7104;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.442;QD=20.80;ReadPosRankSum=0.159;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3724,420,0 chrIV 688530 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.7791;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.10;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3950,426,0 chrIV 688601 . A G 3657.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=20.78;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3657,423,0 chrIV 688602 . C A 3808.01 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=21.39;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3808,426,0 chrIV 688608 . G A 3864.01 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=20.44;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3864,429,0 chrIV 688643 . A T 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.162;QD=19.84;ReadPosRankSum=1.660;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3809,435,0 chrIV 688689 . T G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=217;Dels=0.00;FS=2.889;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.433;QD=21.34;ReadPosRankSum=2.427;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4631,545,0 chrIV 688805 . G T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=19.66;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3932,444,0 chrIV 688819 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=17.29;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:3285,384,0 chrIV 688821 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=188;Dels=0.00;FS=6.053;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;MQRankSum=-0.738;QD=16.71;ReadPosRankSum=2.941;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:3174,366,0 chrIV 688841 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=15.89;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3242,369,0 chrIV 689207 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.900;QD=19.80;ReadPosRankSum=1.678;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,128:133:99:2666,309,0 chrIV 689214 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.488;QD=20.20;ReadPosRankSum=1.708;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2921,333,0 chrIV 689315 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=152;Dels=0.00;FS=5.857;HaplotypeScore=15.8967;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.873;QD=23.10;ReadPosRankSum=2.954;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3511,396,0 chrIV 689403 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.15;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3448,390,0 chrIV 689446 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.56;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3678,396,0 chrIV 689526 . T C 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.278;QD=21.99;ReadPosRankSum=1.694;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3981,450,0 chrIV 689532 . C G 3977.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.09;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3977,453,0 chrIV 689542 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.3276;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.68;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4075,441,0 chrIV 689810 . A C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=158;Dels=0.00;FS=2.374;HaplotypeScore=10.1654;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.340;QD=20.89;ReadPosRankSum=2.679;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:4,153:158:99:3301,387,0 chrIV 690110 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.19;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2563,282,0 chrIV 690128 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.33;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2315,261,0 chrIV 690152 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.86;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2394,264,0 chrIV 690212 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.84;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2284,252,0 chrIV 690267 . C A 2795 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2828,309,0 chrIV 690503 . T A 1986 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.86;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2019,222,0 chrIV 690684 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.51;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1769,204,0 chrIV 690689 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.28;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1550,168,0 chrIV 690751 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.35;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2068,222,0 chrIV 690765 . T C 2169 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.69;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2202,249,0 chrIV 690964 . T A 3584.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.58;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3584,396,0 chrIV 691222 . A C 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.024;QD=18.97;ReadPosRankSum=1.683;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1380,159,0 chrIV 691713 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.14;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3865,423,0 chrIV 691936 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.71;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4038,468,0 chrIV 691984 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.02;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4673,504,0 chrIV 692149 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.14;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3935,417,0 chrIV 692320 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.43;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4072,450,0 chrIV 692518 . G A 4838.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2182;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.26;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4838,537,0 chrIV 692575 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=201;Dels=0.00;FS=7.403;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=1.069;QD=21.01;ReadPosRankSum=2.376;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4223,486,0 chrIV 692593 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.56;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3853,447,0 chrIV 692602 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.56;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3460,390,0 chrIV 692787 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6415;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=19.99;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3379,369,0 chrIV 692797 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.59;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3303,360,0 chrIV 692839 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.61;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2382,279,0 chrIV 692884 . A G 2320 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.68;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2353,264,0 chrIV 693070 . G C 3365.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.21;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3365,381,0 chrIV 693184 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.62;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3566,402,0 chrIV 693255 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.93;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3733,405,0 chrIV 693728 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.03;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3404,387,0 chrIV 693982 . G A 4314.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=26.1452;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=23.70;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4314,462,0 chrIV 694033 . T C 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.762;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-0.437;QD=20.83;ReadPosRankSum=1.716;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4499,528,0 chrIV 694079 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=28.3411;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-1.732;QD=18.61;ReadPosRankSum=-0.615;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4039,439,0 chrIV 694148 . T A 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.9174;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.517;QD=23.46;ReadPosRankSum=1.716;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4951,549,0 chrIV 694241 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=287.6559;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=21.02;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3742,408,0 chrIV 694249 . A G 76.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.852;DP=173;Dels=0.00;FS=2.036;HaplotypeScore=307.6921;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;MQRankSum=0.612;QD=0.44;ReadPosRankSum=-6.345;SB=-2.512e+00 GT:AD:DP:GQ:PL 1/1:150,18:173:12:109,12,0 chrIV 694457 . A G 3057 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=23.16;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3090,348,0 chrIV 694473 . T G 3170 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=23.48;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3203,360,0 chrIV 694503 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=22.52;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2960,330,0 chrIV 694556 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.901;QD=22.50;ReadPosRankSum=1.677;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2868,327,0 chrIV 694587 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.86;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2962,324,0 chrIV 694789 . A C 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=202;Dels=0.01;FS=5.463;HaplotypeScore=28.3799;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.380;QD=23.19;ReadPosRankSum=1.679;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4685,525,0 chrIV 694831 . A C 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=209;Dels=0.00;FS=7.249;HaplotypeScore=126.5889;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.311;QD=22.15;ReadPosRankSum=2.379;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4630,528,0 chrIV 695167 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9710;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.93;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3311,360,0 chrIV 695272 . T C 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=15.7933;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.645;QD=20.79;ReadPosRankSum=1.682;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,136:141:99:2965,342,0 chrIV 695576 . A C 2793 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.52;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2826,321,0 chrIV 695611 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.329;QD=20.77;ReadPosRankSum=1.613;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2463,285,0 chrIV 695620 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.40;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2594,291,0 chrIV 695635 . C T 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=127;Dels=0.00;FS=4.136;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.286;QD=20.08;ReadPosRankSum=0.532;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2583,263,0 chrIV 695803 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=164;Dels=0.00;FS=6.155;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.446;QD=21.27;ReadPosRankSum=2.405;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3488,402,0 chrIV 696106 . C G 3139 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.38;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3172,357,0 chrIV 696116 . A G 2959 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.34;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2992,345,0 chrIV 696283 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.1296;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.130;QD=22.92;ReadPosRankSum=1.713;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4309,486,0 chrIV 696486 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.03;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3393,357,0 chrIV 696499 . T C 2853 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.65;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2886,336,0 chrIV 696637 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3385,390,0 chrIV 696745 . T C 3076 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.79;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3109,351,0 chrIV 696979 . G A 4445.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.42;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4445,472,0 chrIV 697096 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=166;Dels=0.00;FS=6.945;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.112;QD=20.60;ReadPosRankSum=2.420;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3419,396,0 chrIV 697118 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.480;QD=20.39;ReadPosRankSum=1.628;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3426,387,0 chrIV 697144 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.84;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3898,438,0 chrIV 697201 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.29;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3874,438,0 chrIV 697575 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.02;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3501,387,0 chrIV 697597 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=3.139;HaplotypeScore=9.0695;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.881;QD=20.10;ReadPosRankSum=1.671;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3437,393,0 chrIV 697699 . T G 4649.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.13;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4649,522,0 chrIV 697759 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.07;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2969,324,0 chrIV 697891 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.18;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1600,174,0 chrIV 698026 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=23.14;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1352,159,0 chrIV 698151 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.41;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2371,264,0 chrIV 698232 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.92;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2690,297,0 chrIV 698243 . T A 2620 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5130;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=20.31;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2653,294,0 chrIV 698270 . T C 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=7.573;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-0.347;QD=17.59;ReadPosRankSum=2.361;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2460,285,0 chrIV 698272 . T G 2437 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.41;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2470,276,0 chrIV 698347 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.35;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3297,372,0 chrIV 698417 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.40;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3440,390,0 chrIV 698508 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.00;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3519,408,0 chrIV 698668 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.5332;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.17;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4633,510,0 chrIV 698788 . G A 5237.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.59;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5237,597,0 chrIV 699022 . T A 5609.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=18.7697;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.17;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5609,609,0 chrIV 699153 . C T 5856.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.80;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5856,631,0 chrIV 699229 . A G 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=223;Dels=0.00;FS=3.189;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.328;QD=20.44;ReadPosRankSum=1.717;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4557,510,0 chrIV 699280 . T C 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=4.811;HaplotypeScore=15.2283;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.541;QD=20.43;ReadPosRankSum=1.685;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4514,522,0 chrIV 699436 . A C 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.817;QD=22.32;ReadPosRankSum=1.714;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4353,486,0 chrIV 699549 . C T 4813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=3.891;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.430;QD=22.08;ReadPosRankSum=0.350;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4813,522,0 chrIV 699810 . C G 3574.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.9512;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.06;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3574,414,0 chrIV 699938 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=23.57;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3370,375,0 chrIV 700023 . C T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.80;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4499,498,0 chrIV 700151 . A G 4381.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.80;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4381,498,0 chrIV 700170 . A C 4385.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.07;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4385,507,0 chrIV 700186 . G A 4219.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.44;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4219,447,0 chrIV 700210 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=17.12;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3270,375,0 chrIV 700250 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.57;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3950,444,0 chrIV 700440 . C T 3199 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.37;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3232,351,0 chrIV 700614 . A G 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.00;FS=3.962;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.323;QD=22.84;ReadPosRankSum=1.678;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2980,339,0 chrIV 700752 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.84;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2555,282,0 chrIV 700773 . T C 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=109;Dels=0.00;FS=3.037;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.399;QD=18.98;ReadPosRankSum=2.381;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2102,237,0 chrIV 700855 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.51;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3354,363,0 chrIV 700908 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2677;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.00;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3322,372,0 chrIV 701137 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3074;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.01;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3290,357,0 chrIV 701178 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.1593;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.00;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2847,315,0 chrIV 701238 . C G 2605 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.01;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2638,297,0 chrIV 701262 . T C 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=127;Dels=0.00;FS=3.005;HaplotypeScore=4.2628;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.922;QD=19.72;ReadPosRankSum=2.390;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,122:127:99:2537,288,0 chrIV 701279 . A G 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.570;DP=114;Dels=0.00;FS=18.864;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.024;QD=19.22;ReadPosRankSum=2.878;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:5,109:114:99:2224,252,0 chrIV 701448 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.68;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2040,237,0 chrIV 701457 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.85;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2035,219,0 chrIV 701637 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.40;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2161,240,0 chrIV 701674 . G C 2186 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.64;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2219,252,0 chrIV 701710 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.79;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2335,255,0 chrIV 701739 . C T 2405 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.58;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2438,258,0 chrIV 702278 . T A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.61;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3471,375,0 chrIV 702480 . A G 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.150;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.100;QD=22.08;ReadPosRankSum=1.705;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2815,321,0 chrIV 702552 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=15.80;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1550,177,0 chrIV 702555 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.52;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1569,171,0 chrIV 702738 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=22.77;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2242,246,0 chrIV 702781 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=24.34;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2783,297,0 chrIV 702823 . T C 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;MQRankSum=-0.857;QD=23.47;ReadPosRankSum=1.696;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2286,261,0 chrIV 702879 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.35;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1924,219,0 chrIV 702934 . A G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.3750;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;MQRankSum=-0.460;QD=19.28;ReadPosRankSum=1.697;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1922,216,0 chrIV 702967 . A G 2012 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=2.899;HaplotypeScore=4.4345;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;MQRankSum=-2.014;QD=17.81;ReadPosRankSum=2.232;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2045,231,0 chrIV 702970 . T A 1995 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=6.4653;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=18.82;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2028,222,0 chrIV 702971 . G C 1940 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=6.4653;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=18.30;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1973,225,0 chrIV 702993 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=15.75;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1765,192,0 chrIV 702996 . T A 1735 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=14.96;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1768,195,0 chrIV 703045 . T C 1158 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=12.32;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1191,135,0 chrIV 703059 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.0641;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=14.39;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1414,156,0 chrIV 703137 . G C 3044 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.60;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3077,348,0 chrIV 703208 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=23.75;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4251,480,0 chrIV 703275 . A G 4405.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6315;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.14;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4405,513,0 chrIV 703299 . C A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.5273;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.56;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3902,444,0 chrIV 703359 . G A 4162.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.02;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4162,471,0 chrIV 703386 . G C 4777.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.52;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4777,537,0 chrIV 703464 . T C 5247.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.14;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5247,594,0 chrIV 703521 . G A 5519.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.9766;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.69;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5519,606,0 chrIV 703572 . G A 4933.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.73;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4933,540,0 chrIV 703850 . G A 6861.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=17.2274;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.64;SB=-3.888e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:6861,739,0 chrIV 703905 . C T 6130.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=30.3375;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.92;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,290:293:99:6130,699,0 chrIV 706032 . T C 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=226;Dels=0.00;FS=9.156;HaplotypeScore=16.0185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.084;QD=21.99;ReadPosRankSum=2.383;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,218:226:99:4970,549,0 chrIV 706601 . T C 4569.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.9780;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.55;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4569,525,0 chrIV 706922 . T C 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.530;QD=22.32;ReadPosRankSum=1.716;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:4956,573,0 chrIV 707014 . A C 3968.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.62;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3968,453,0 chrIV 707207 . C T 3973.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.4248;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.70;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3973,435,0 chrIV 707342 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.51;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3338,357,0 chrIV 707396 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.577;QD=23.25;ReadPosRankSum=1.709;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3464,393,0 chrIV 707555 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.16;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3280,363,0 chrIV 707900 . A T 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=178;Dels=0.00;FS=13.541;HaplotypeScore=3.3956;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-2.394;QD=21.29;ReadPosRankSum=3.252;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:4,173:178:99:3790,429,0 chrIV 707905 . T A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.10;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3692,405,0 chrIV 708341 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.15;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3721,429,0 chrIV 709011 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=1.648;QD=21.34;ReadPosRankSum=1.690;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3564,402,0 chrIV 709040 . A G 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.324;QD=19.97;ReadPosRankSum=1.687;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3129,351,0 chrIV 709044 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=19.54;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3061,348,0 chrIV 709210 . G C 2677 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=17.85;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2710,306,0 chrIV 709241 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=16.61;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2010,228,0 chrIV 709257 . A G 1472 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=3.020;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;MQRankSum=-1.208;QD=13.76;ReadPosRankSum=2.289;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1505,177,0 chrIV 709260 . T C 1449 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=14.49;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1482,171,0 chrIV 709261 . A C 1413 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=13.85;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1446,171,0 chrIV 709492 . T C 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=9.105;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.678;QD=21.54;ReadPosRankSum=2.413;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2962,333,0 chrIV 709623 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=174;Dels=0.00;FS=2.583;HaplotypeScore=9.8551;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.901;QD=23.32;ReadPosRankSum=2.960;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:4057,468,0 chrIV 709671 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.43;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2994,339,0 chrIV 709887 . C T 5283.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.12;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5283,568,0 chrIV 709953 . C T 4634.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.17;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4634,516,0 chrIV 710007 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.49;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4543,504,0 chrIV 710100 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0489;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.68;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3660,405,0 chrIV 710109 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=18.58;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3308,372,0 chrIV 710130 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.17;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3528,384,0 chrIV 710277 . A G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=149;Dels=0.00;FS=7.741;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.237;QD=21.27;ReadPosRankSum=2.383;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3202,375,0 chrIV 710371 . A G 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=204;Dels=0.00;FS=3.014;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=2.159;QD=22.88;ReadPosRankSum=2.425;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4668,525,0 chrIV 710478 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.121;QD=21.80;ReadPosRankSum=1.712;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3749,420,0 chrIV 710492 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.87;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3586,402,0 chrIV 710715 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.73;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3537,378,0 chrIV 710790 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.92;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2592,285,0 chrIV 710850 . A G 1949 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.96;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1982,228,0 chrIV 710853 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.77;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1992,222,0 chrIV 710996 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.933;QD=21.80;ReadPosRankSum=1.618;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2039,231,0 chrIV 711174 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.86;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2634,285,0 chrIV 711288 . G C 2400 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.05;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2433,279,0 chrIV 711312 . T C 2047 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.68;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2080,237,0 chrIV 711314 . T C 2158 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.98;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2191,246,0 chrIV 711528 . A C 2646 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.05;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2679,318,0 chrIV 711597 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.89;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2947,330,0 chrIV 711709 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.62;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2025,225,0 chrIV 711909 . C G 1829 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.27;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1862,207,0 chrIV 711916 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.41;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1931,210,0 chrIV 711956 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.96;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2276,246,0 chrIV 712074 . T A 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.834;QD=22.39;ReadPosRankSum=1.700;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2473,276,0 chrIV 712092 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.26;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2704,303,0 chrIV 712122 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.57;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2790,309,0 chrIV 712473 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6200;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.62;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2411,261,0 chrIV 712698 . A T 2567 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.13;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2600,291,0 chrIV 712857 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.29;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3610,405,0 chrIV 713009 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.048;QD=21.48;ReadPosRankSum=2.411;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2782,321,0 chrIV 713059 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.44;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2729,288,0 chrIV 713084 . G T 2680 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.10;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2713,291,0 chrIV 713108 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.86;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2662,288,0 chrIV 713130 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.31;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2690,297,0 chrIV 713166 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.45;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2201,243,0 chrIV 713335 . T C 2616 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.82;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2649,300,0 chrIV 713336 . T A 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-0.446;QD=20.27;ReadPosRankSum=1.706;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2709,300,0 chrIV 713415 . C A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.99;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3526,387,0 chrIV 713451 . A G 3731.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.48;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3731,426,0 chrIV 713505 . G A 2952 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.68;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2985,345,0 chrIV 713520 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.86;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2953,333,0 chrIV 713871 . C T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.4693;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.31;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4016,444,0 chrIV 714483 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.7308;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.255;QD=20.37;ReadPosRankSum=1.456;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2885,324,0 chrIV 714588 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=178;Dels=0.00;FS=6.563;HaplotypeScore=15.4271;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.798;QD=20.02;ReadPosRankSum=2.421;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,172:178:99:3563,411,0 chrIV 714612 . A T 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=4.109;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.306;QD=20.31;ReadPosRankSum=1.712;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3452,384,0 chrIV 714705 . G A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=23.51;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4913,528,0 chrIV 714714 . C T 4394.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.7566;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.23;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4394,492,0 chrIV 714933 . T C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=241;Dels=0.00;FS=5.953;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.114;QD=18.72;ReadPosRankSum=2.920;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:3,234:241:99:4512,519,0 chrIV 714934 . C T 4694.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.72;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4694,522,0 chrIV 715058 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=17.23;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3326,378,0 chrIV 715352 . T C 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=113;Dels=0.00;FS=6.137;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.165;QD=20.26;ReadPosRankSum=2.319;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2322,267,0 chrIV 715627 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.0340;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.52;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2293,258,0 chrIV 715629 . A G 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=3.027;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.550;QD=19.44;ReadPosRankSum=2.407;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2249,258,0 chrIV 715691 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.79;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2100,231,0 chrIV 715715 . T A 2968 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.99;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3001,327,0 chrIV 715933 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.03;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3500,387,0 chrIV 716020 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0056;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.38;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3219,351,0 chrIV 716075 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.12;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3375,372,0 chrIV 716118 . T C 2871 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.43;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2904,336,0 chrIV 716374 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=5.045;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.066;QD=22.89;ReadPosRankSum=1.626;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3032,348,0 chrIV 716407 . A T 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.093;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-0.942;QD=22.12;ReadPosRankSum=1.707;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3042,342,0 chrIV 716464 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=2.752;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=0.194;QD=21.13;ReadPosRankSum=2.416;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3118,360,0 chrIV 716510 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=188;Dels=0.00;FS=3.854;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.861;QD=19.22;ReadPosRankSum=1.695;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3613,423,0 chrIV 716521 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=7.439;HaplotypeScore=7.5008;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.470;QD=18.90;ReadPosRankSum=2.423;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:3477,402,0 chrIV 716609 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=17.37;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2778,303,0 chrIV 716612 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.5205;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;MQRankSum=-1.370;QD=16.57;ReadPosRankSum=2.387;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,155:160:99:2685,306,0 chrIV 716641 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;MQRankSum=-1.075;QD=17.04;ReadPosRankSum=1.709;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2640,300,0 chrIV 716654 . G T 2748 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=16.55;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2781,303,0 chrIV 716660 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=16.45;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2830,321,0 chrIV 716702 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=171;Dels=0.00;FS=2.928;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.295;QD=18.78;ReadPosRankSum=2.421;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3245,384,0 chrIV 716832 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.24;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3219,345,0 chrIV 716915 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.12;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3152,351,0 chrIV 717012 . A T 3098 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.12;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3131,345,0 chrIV 717247 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=134;Dels=0.00;FS=9.846;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.038;QD=21.78;ReadPosRankSum=2.750;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:2951,330,0 chrIV 717264 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.31;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3017,342,0 chrIV 717285 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=130;Dels=0.00;FS=9.338;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.760;QD=20.88;ReadPosRankSum=2.853;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2747,321,0 chrIV 717372 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.64;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1602,183,0 chrIV 717377 . G C 1608 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.61;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1641,192,0 chrIV 717532 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=24.26;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2629,285,0 chrIV 717546 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=22.72;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2487,270,0 chrIV 717624 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=4.183;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.415;QD=23.23;ReadPosRankSum=1.679;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3100,351,0 chrIV 717634 . C A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.56;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3299,354,0 chrIV 717729 . G C 2413 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=18.71;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2446,282,0 chrIV 717736 . T C 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.300;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.251;QD=19.59;ReadPosRankSum=1.648;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2482,279,0 chrIV 717744 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.90;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2478,270,0 chrIV 717791 . A G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;MQRankSum=-0.131;QD=18.62;ReadPosRankSum=1.680;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2528,282,0 chrIV 717813 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=21.12;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2926,315,0 chrIV 717834 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=17.76;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2874,321,0 chrIV 717840 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=19.30;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3082,336,0 chrIV 717936 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.16;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3673,402,0 chrIV 717987 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.952;QD=22.74;ReadPosRankSum=1.663;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3457,393,0 chrIV 718146 . C T 4065.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.09;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4065,453,0 chrIV 718187 . C A 3100 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.63;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3133,339,0 chrIV 718220 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.00;FS=4.550;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=0.103;QD=20.33;ReadPosRankSum=1.499;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2777,318,0 chrIV 718242 . T A 2957 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=21.74;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2990,339,0 chrIV 718259 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=21.42;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3074,342,0 chrIV 718287 . G C 3196 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.74;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3229,369,0 chrIV 718303 . T C 3076 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.36;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3109,354,0 chrIV 718331 . A C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=129;Dels=0.00;FS=2.790;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.772;QD=20.01;ReadPosRankSum=2.411;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2614,300,0 chrIV 718416 . C A 1863 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=20.93;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1896,213,0 chrIV 718424 . T C 1782 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.96;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1815,204,0 chrIV 718455 . A T 1494 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.67;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1527,174,0 chrIV 718506 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.39;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1739,198,0 chrIV 718540 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.495;QD=21.43;ReadPosRankSum=1.661;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2133,240,0 chrIV 718612 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.18;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1706,189,0 chrIV 718640 . T G 1796 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.64;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1829,204,0 chrIV 718666 . A G 2029 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.49;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2062,234,0 chrIV 718760 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7249;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.47;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1844,207,0 chrIV 718867 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.29;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3619,408,0 chrIV 718958 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.58;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2491,273,0 chrIV 719116 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.38;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3754,411,0 chrIV 719391 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.3815;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.773;QD=22.17;ReadPosRankSum=1.705;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2960,336,0 chrIV 719593 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.58;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3240,351,0 chrIV 719669 . A G 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.478;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.813;QD=19.78;ReadPosRankSum=1.626;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1971,222,0 chrIV 719671 . G A 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-1.191;QD=18.66;ReadPosRankSum=-1.335;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1843,189,0 chrIV 719728 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7986;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.92;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2039,222,0 chrIV 719745 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.497;QD=19.32;ReadPosRankSum=1.664;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1984,225,0 chrIV 719896 . A G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.702;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.363;QD=22.23;ReadPosRankSum=1.678;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2945,333,0 chrIV 720645 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1290,147,0 chrIV 720696 . G C 1050 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.87;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1083,123,0 chrIV 720761 . C T 961 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.89;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:994,108,0 chrIV 720763 . G T 929 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.11;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,42:44:99:962,108,0 chrIV 720857 . A T 360 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.95;SB=-6.777e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:45:393,45,0 chrIV 720993 . C G 861 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=23.92;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:894,102,0 chrIV 721283 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.9347;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.47;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4529,513,0 chrIV 721365 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=138;Dels=0.00;FS=2.844;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-0.483;QD=21.96;ReadPosRankSum=2.413;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3063,348,0 chrIV 721991 . G C 4651.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.43;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4651,528,0 chrIV 722085 . A G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9296;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.430;QD=20.15;ReadPosRankSum=2.931;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2068,231,0 chrIV 722270 . A T 491 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=11.98;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:60:524,60,0 chrIV 722407 . A G 1757 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.6600;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.43;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1790,201,0 chrIV 722687 . C A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.19;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3618,405,0 chrIV 722776 . A G 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.367;QD=18.39;ReadPosRankSum=1.691;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3160,369,0 chrIV 723150 . G A 5796.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.7075;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.95;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5796,625,0 chrIV 723345 . G A 5952.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.39;SB=-3.862e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:5952,643,0 chrIV 723349 . G A 5861.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=1.9601;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.03;SB=-4.000e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:5861,639,0 chrIV 723451 . A G 5768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=262;Dels=0.00;FS=3.008;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.024;QD=22.02;ReadPosRankSum=2.412;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:2,257:262:99:5768,660,0 chrIV 723573 . C G 4966.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.22;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4966,573,0 chrIV 723910 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.6334;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.21;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4153,456,0 chrIV 724081 . G A 7583.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.85;SB=-3.950e+03 GT:AD:DP:GQ:PL 1/1:0,318:318:99:7583,826,0 chrIV 724585 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.95;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3644,402,0 chrIV 724602 . A C 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.269;QD=21.56;ReadPosRankSum=1.677;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4031,453,0 chrIV 725245 . C T 5126.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.0805;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.58;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5126,567,0 chrIV 725461 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.232;QD=21.15;ReadPosRankSum=1.714;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,194:199:99:4209,492,0 chrIV 725487 . C T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.04;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4632,498,0 chrIV 725692 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.2153;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.490;QD=21.80;ReadPosRankSum=1.713;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4099,465,0 chrIV 726379 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.04;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2200,249,0 chrIV 726520 . T C 2352 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2385,270,0 chrIV 726678 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.722;QD=21.51;ReadPosRankSum=1.703;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2636,300,0 chrIV 726762 . C G 2721 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.49;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2754,315,0 chrIV 726870 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3141,345,0 chrIV 727318 . T A 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=2.945;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.620;QD=22.72;ReadPosRankSum=2.312;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2873,315,0 chrIV 727624 . A T 2270 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.02;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2303,261,0 chrIV 727764 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=103.6883;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=17.69;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2138,243,0 chrIV 727788 . C A 1841 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=16.74;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1874,204,0 chrIV 727807 . A T 1915 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=16.51;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1948,216,0 chrIV 727987 . A G 3128 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2272;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=22.50;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3161,366,0 chrIV 728057 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.22;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2899,321,0 chrIV 728918 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2802,306,0 chrIV 728966 . A C 1831 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=12.4630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1864,213,0 chrIV 729120 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3233,351,0 chrIV 729836 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.33;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2902,321,0 chrIV 729956 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.88;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3030,327,0 chrIV 730059 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=158;Dels=0.00;FS=6.014;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.173;QD=23.00;ReadPosRankSum=2.955;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3634,414,0 chrIV 730085 . A G 3181 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.21;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3214,363,0 chrIV 730110 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.87;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3143,342,0 chrIV 730199 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=159;Dels=0.00;FS=10.712;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.395;QD=22.76;ReadPosRankSum=2.917;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3619,411,0 chrIV 730652 . G C 2348 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2381,270,0 chrIV 730704 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.98;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2363,267,0 chrIV 730734 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.111;QD=22.15;ReadPosRankSum=1.699;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2403,270,0 chrIV 731588 . G A 4222.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.58;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4222,480,0 chrIV 731928 . T C 2344 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2377,270,0 chrIV 732272 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.88;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2221,258,0 chrIV 732347 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.98;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2768,303,0 chrIV 732775 . A G 2109 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.44;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2142,237,0 chrIV 732996 . A G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=11.506;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.156;QD=22.04;ReadPosRankSum=2.395;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,132:136:99:3031,345,0 chrIV 733018 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.95;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3692,402,0 chrIV 733047 . C T 3854.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.24;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3854,423,0 chrIV 733663 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.58;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2933,318,0 chrIV 734357 . T C 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=131;Dels=0.00;FS=6.677;HaplotypeScore=13.3938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.760;QD=20.08;ReadPosRankSum=2.412;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2664,300,0 chrIV 734549 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=4.199;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.976;QD=23.73;ReadPosRankSum=1.659;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3369,384,0 chrIV 735360 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.27;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3397,387,0 chrIV 735567 . A T 2837 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0802;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.84;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2870,315,0 chrIV 736335 . T C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.500;QD=23.20;ReadPosRankSum=1.655;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3165,351,0 chrIV 736395 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.71;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3139,348,0 chrIV 736692 . C T 4555.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.1948;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.66;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4555,498,0 chrIV 737469 . A T 3083 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.01;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3116,342,0 chrIV 737795 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2295,258,0 chrIV 738079 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2177,240,0 chrIV 738672 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=4.221;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.172;QD=24.16;ReadPosRankSum=1.701;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2715,309,0 chrIV 739050 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.54;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2691,306,0 chrIV 739056 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.16;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2634,294,0 chrIV 739488 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=168;Dels=0.00;FS=5.872;HaplotypeScore=9.8202;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.024;QD=22.93;ReadPosRankSum=2.934;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:3,163:168:99:3852,441,0 chrIV 740017 . A G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=124;Dels=0.00;FS=2.838;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.190;QD=22.06;ReadPosRankSum=2.410;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2768,306,0 chrIV 740207 . A G 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=115;Dels=0.00;FS=6.609;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=0.931;QD=15.30;ReadPosRankSum=2.407;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1792,201,0 chrIV 740221 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=17.45;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1673,183,0 chrIV 741463 . A G 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.699;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.594;QD=23.58;ReadPosRankSum=1.663;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3561,402,0 chrIV 741683 . T C 2647 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2680,300,0 chrIV 741803 . G C 936 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=16.14;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:969,111,0 chrIV 742431 . C T 5910.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.93;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5910,645,0 chrIV 742824 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.352;QD=24.41;ReadPosRankSum=1.669;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4003,450,0 chrIV 743256 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7344;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.89;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2917,324,0 chrIV 743368 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=203;Dels=0.00;FS=3.437;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.811;QD=20.65;ReadPosRankSum=1.715;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4192,489,0 chrIV 743651 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.4408;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.05;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3621,393,0 chrIV 743850 . T C 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=4.592;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.128;QD=20.12;ReadPosRankSum=1.696;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1965,219,0 chrIV 744093 . T C 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=1.152;QD=20.90;ReadPosRankSum=2.241;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1266,144,0 chrIV 744094 . C A 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=1.600;QD=20.80;ReadPosRankSum=2.086;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1302,147,0 chrIV 744117 . A G 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=67;Dels=0.00;FS=8.327;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.940;QD=19.06;ReadPosRankSum=2.266;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1310,150,0 chrIV 744215 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2234,246,0 chrIV 744329 . A T 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=4.446;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.497;QD=24.45;ReadPosRankSum=1.665;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2551,282,0 chrIV 744435 . C A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.8606;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.32;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3478,372,0 chrIV 745067 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0534;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.83;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3470,387,0 chrIV 745712 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.67;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4551,519,0 chrIV 745766 . G A 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6210;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.946;QD=23.87;ReadPosRankSum=1.714;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4631,498,0 chrIV 745916 . C T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.5054;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.56;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3775,426,0 chrIV 745922 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.98;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3756,414,0 chrIV 745998 . A T 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.625;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.732;QD=22.84;ReadPosRankSum=1.667;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3631,393,0 chrIV 746167 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.79;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3027,330,0 chrIV 746186 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=6.8237;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.33;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3617,390,0 chrIV 746218 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.8272;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.07;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3355,363,0 chrIV 746381 . T C 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.091;QD=17.87;ReadPosRankSum=1.680;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2427,285,0 chrIV 746639 . C A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.0035;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.52;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4045,441,0 chrIV 746669 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.03;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4444,480,0 chrIV 747029 . T C 2986 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.1213;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.02;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3019,339,0 chrIV 747053 . A G 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.02;FS=0.000;HaplotypeScore=20.0314;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.174;QD=15.75;ReadPosRankSum=1.671;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:2757,315,0 chrIV 747056 . C T 2700 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.02;FS=0.000;HaplotypeScore=25.0417;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.52;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2733,297,0 chrIV 747523 . G A 692 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.01;FS=0.000;HaplotypeScore=194.0384;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=1;QD=3.09;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:81:725,81,0 chrIV 747526 . G A 589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.429;DP=219;Dels=0.00;FS=3.562;HaplotypeScore=223.6970;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=1;MQRankSum=1.176;QD=2.69;ReadPosRankSum=-0.524;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:69:622,69,0 chrIV 747535 . G A 134.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.705;DP=220;Dels=0.00;FS=3.542;HaplotypeScore=37.1766;MLEAC=1;MLEAF=0.500;MQ=31.09;MQ0=0;MQRankSum=1.921;QD=0.61;ReadPosRankSum=-0.962;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:189,31:220:99:164,0,408 chrIV 747550 . G A 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.691;DP=211;Dels=0.00;FS=3.157;HaplotypeScore=512.2476;MLEAC=1;MLEAF=0.500;MQ=32.81;MQ0=0;MQRankSum=0.585;QD=0.34;ReadPosRankSum=-2.770;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:189,20:211:99:102,0,493 chrIV 747579 . A C 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=26.0526;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;MQRankSum=-1.157;QD=7.76;ReadPosRankSum=3.678;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:5,155:162:99:1290,144,0 chrIV 747585 . G A 1415 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.02;FS=0.000;HaplotypeScore=21.2057;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=9.19;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:1448,159,0 chrIV 747674 . A C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=207;Dels=0.00;FS=5.697;HaplotypeScore=10.7853;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.537;QD=18.82;ReadPosRankSum=2.790;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:3895,438,0 chrIV 747737 . G T 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=197;Dels=0.04;FS=0.000;HaplotypeScore=30.1392;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;MQRankSum=0.884;QD=21.52;ReadPosRankSum=1.622;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4239,465,0 chrIV 748054 . C T 4299.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.8829;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.02;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4299,471,0 chrIV 748321 . T C 1370 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.15;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1403,168,0 chrIV 748324 . A G 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-1.287;QD=21.63;ReadPosRankSum=1.683;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1547,171,0 chrIV 748386 . A G 828 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.23;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:861,99,0 chrIV 748547 . C T 130.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.59;SB=-2.788e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:163,18,0 chrIV 748610 . T C 849 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.555;QD=21.77;ReadPosRankSum=1.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,38:39:99:882,99,0 chrIV 749531 . G A 5200.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5200,585,0 chrIV 749726 . G T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3494,384,0 chrIV 750110 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.41;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2688,309,0 chrIV 750125 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.65;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2367,264,0 chrIV 750698 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.60;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3610,390,0 chrIV 751203 . C A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0022;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3283,360,0 chrIV 751285 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.285;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.567;QD=22.24;ReadPosRankSum=1.709;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3270,378,0 chrIV 751326 . A G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=145;Dels=0.00;FS=3.041;HaplotypeScore=8.2877;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.902;QD=22.03;ReadPosRankSum=2.381;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3228,366,0 chrIV 751490 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.8102;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=23.03;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4100,468,0 chrIV 751891 . A G 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.015;QD=20.08;ReadPosRankSum=2.964;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:3935,441,0 chrIV 752041 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2062,234,0 chrIV 752651 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.40;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1825,198,0 chrIV 752863 . C T 4208.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.50;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4208,456,0 chrIV 752908 . A C 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=143;Dels=0.00;FS=7.672;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.286;QD=22.87;ReadPosRankSum=2.346;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3270,369,0 chrIV 752995 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.096;QD=22.20;ReadPosRankSum=1.710;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3508,402,0 chrIV 753357 . A G 689 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.69;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:84:722,84,0 chrIV 753375 . G T 524 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.78;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:60:557,60,0 chrIV 753858 . G A 5042.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.34;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5042,567,0 chrIV 753936 . A G 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=21.14;ReadPosRankSum=1.716;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,219:223:99:4714,543,0 chrIV 754044 . G T 4614.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.2393;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.07;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4614,516,0 chrIV 754071 . C G 4256.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.9254;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.60;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4256,489,0 chrIV 754974 . T C 2259 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2292,261,0 chrIV 755101 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.39;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2174,255,0 chrIV 755547 . G A 4560.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.8489;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.26;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4560,495,0 chrIV 755801 . A T 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=17.3876;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.316;QD=20.90;ReadPosRankSum=1.663;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3168,360,0 chrIV 756152 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.86;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2892,318,0 chrIV 756842 . T C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.718;QD=22.02;ReadPosRankSum=1.690;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1839,207,0 chrIV 756915 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.39;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2232,246,0 chrIV 757081 . A C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.3330;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.82;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3250,366,0 chrIV 757409 . A T 1603 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=21.96;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1636,171,0 chrIV 757412 . G A 1489 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=0;QD=20.68;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1522,168,0 chrIV 757414 . A C 1348 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;MQRankSum=-2.414;QD=19.82;ReadPosRankSum=2.305;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1381,156,0 chrIV 757424 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;QD=15.86;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1175,141,0 chrIV 757439 . C T 923 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=0;QD=14.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:956,117,0 chrIV 757443 . A G 906 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=0;QD=14.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:939,111,0 chrIV 757478 . C A 894 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=1;QD=11.76;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:927,114,0 chrIV 757496 . G A 669 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.61;MQ0=1;QD=10.29;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:90:702,90,0 chrIV 757506 . A G 651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=1;MQRankSum=1.543;QD=11.62;ReadPosRankSum=1.669;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:90:684,90,0 chrIV 757508 . G T 617 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.34;MQ0=1;QD=11.22;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:84:650,84,0 chrIV 757532 . C T 372 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=0;QD=9.79;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:51:405,51,0 chrIV 757538 . A G 338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.51;MQ0=0;MQRankSum=-1.059;QD=9.39;ReadPosRankSum=1.636;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:48:371,48,0 chrIV 757544 . C T 215 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.97;MQ0=0;QD=6.72;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:33:248,33,0 chrIV 757558 . A G 192 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=0;QD=11.29;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:30:225,30,0 chrIV 757564 . C A 78.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.79;MQ0=0;QD=6.02;SB=-2.224e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:111,15,0 chrIV 757631 . G T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.36;MQ0=1;QD=0.60;SB=-2.877e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:6:54,6,0 chrIV 757635 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139;DP=42;Dels=0.00;FS=7.570;HaplotypeScore=3.7686;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=2;MQRankSum=-0.712;QD=0.40;ReadPosRankSum=2.029;SB=1.24 GT:AD:DP:GQ:PL 1/1:8,34:42:6:48,6,0 chrIV 757670 . C A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.622;DP=102;Dels=0.00;FS=9.301;HaplotypeScore=3.3527;MLEAC=1;MLEAF=0.500;MQ=18.01;MQ0=6;MQRankSum=-1.473;QD=0.38;ReadPosRankSum=3.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,48:102:69:69,0,195 chrIV 757688 . G A 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.713;DP=144;Dels=0.00;FS=15.825;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.62;MQ0=7;MQRankSum=-3.614;QD=0.57;ReadPosRankSum=2.406;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:83,61:144:99:112,0,243 chrIV 757698 . A G 411 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.3238;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=7;MQRankSum=-1.732;QD=2.83;ReadPosRankSum=1.707;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,142:145:54:444,54,0 chrIV 757715 . G A 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.161;DP=170;Dels=0.00;FS=5.268;HaplotypeScore=11.1520;MLEAC=1;MLEAF=0.500;MQ=19.97;MQ0=25;MQRankSum=0.714;QD=0.31;ReadPosRankSum=0.410;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,55:170:83:83,0,348 chrIV 757724 . C T 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.938;DP=181;Dels=0.00;FS=46.003;HaplotypeScore=30.5935;MLEAC=1;MLEAF=0.500;MQ=20.04;MQ0=32;MQRankSum=-3.694;QD=1.69;ReadPosRankSum=2.585;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:40,141:181:99:335,0,122 chrIV 757730 . A G 242.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;DP=186;Dels=0.00;FS=46.696;HaplotypeScore=4.9603;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=31;MQRankSum=-3.739;QD=1.30;ReadPosRankSum=1.342;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:40,146:186:99:272,0,204 chrIV 757746 . T C 174.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.342;DP=186;Dels=0.00;FS=18.400;HaplotypeScore=124.6481;MLEAC=1;MLEAF=0.500;MQ=20.78;MQ0=36;MQRankSum=4.600;QD=0.94;ReadPosRankSum=1.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,97:186:99:204,0,262 chrIV 757750 . A G 186.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.857;DP=185;Dels=0.00;FS=18.624;HaplotypeScore=124.3316;MLEAC=1;MLEAF=0.500;MQ=20.77;MQ0=36;MQRankSum=-3.781;QD=1.01;ReadPosRankSum=-0.038;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:97,88:185:99:216,0,230 chrIV 757754 . G A 102.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.077;DP=176;Dels=0.00;FS=7.611;HaplotypeScore=125.1725;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=35;MQRankSum=5.293;QD=0.58;ReadPosRankSum=2.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,82:176:99:132,0,191 chrIV 757756 . C A 248.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.606;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=108.8529;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=35;MQRankSum=-3.201;QD=1.45;ReadPosRankSum=0.503;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:41,130:171:32:278,0,32 chrIV 757814 . T A 433.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=186;Dels=0.00;FS=35.740;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=21.94;MQ0=21;MQRankSum=-2.181;QD=2.33;ReadPosRankSum=5.132;SB=-1.431e+02 GT:AD:DP:GQ:PL 1/1:119,64:186:15:466,15,0 chrIV 757824 . T C 693 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.9927;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=21;MQRankSum=-1.644;QD=3.30;ReadPosRankSum=1.761;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:2,208:210:84:726,84,0 chrIV 757835 . C T 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.444;DP=217;Dels=0.00;FS=167.018;HaplotypeScore=12.0545;MLEAC=1;MLEAF=0.500;MQ=21.82;MQ0=18;MQRankSum=0.714;QD=0.39;ReadPosRankSum=4.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,130:217:99:115,0,748 chrIV 757846 . C T 154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.866;DP=239;Dels=0.00;FS=112.510;HaplotypeScore=40.5553;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=24;MQRankSum=-0.287;QD=0.64;ReadPosRankSum=-0.456;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:198,41:239:99:184,0,845 chrIV 757848 . G A 701.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.136;DP=245;Dels=0.00;FS=96.874;HaplotypeScore=78.9695;MLEAC=1;MLEAF=0.500;MQ=22.16;MQ0=24;MQRankSum=0.746;QD=2.86;ReadPosRankSum=-0.104;SB=-3.310e+02 GT:AD:DP:GQ:PL 0/1:156,84:245:99:731,0,338 chrIV 757883 . C A 404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.504;DP=262;Dels=0.00;FS=113.732;HaplotypeScore=4.8552;MLEAC=1;MLEAF=0.500;MQ=21.92;MQ0=39;MQRankSum=-1.883;QD=1.54;ReadPosRankSum=-2.018;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:176,85:262:99:434,0,1267 chrIV 757901 . G A 1212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.076;DP=309;Dels=0.00;FS=2.670;HaplotypeScore=19.9546;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=32;MQRankSum=-3.358;QD=3.92;ReadPosRankSum=-2.267;SB=-6.130e+02 GT:AD:DP:GQ:PL 0/1:170,135:309:99:1242,0,1392 chrIV 757913 . G T 1728.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.927;DP=368;Dels=0.00;FS=3.213;HaplotypeScore=54.4600;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=30;MQRankSum=-0.675;QD=4.70;ReadPosRankSum=-1.960;SB=-6.940e+02 GT:AD:DP:GQ:PL 0/1:190,134:368:99:1758,0,1740 chrIV 757928 . G A 1373.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.097;DP=430;Dels=0.00;FS=9.536;HaplotypeScore=52.5236;MLEAC=1;MLEAF=0.500;MQ=26.78;MQ0=39;MQRankSum=0.531;QD=3.19;ReadPosRankSum=1.594;SB=-6.030e+02 GT:AD:DP:GQ:PL 0/1:281,149:430:99:1403,0,3555 chrIV 757943 . A G 6380.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085;DP=440;Dels=0.00;FS=21.493;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=35;MQRankSum=4.002;QD=14.50;ReadPosRankSum=0.287;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:72,366:440:99:6380,329,0 chrIV 757961 . T C 9654.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.877;DP=532;Dels=0.00;FS=36.126;HaplotypeScore=21.1876;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=19;MQRankSum=-1.378;QD=18.15;ReadPosRankSum=5.085;SB=-3.779e+03 GT:AD:DP:GQ:PL 1/1:9,523:532:99:9654,1115,0 chrIV 758042 . C T 4361.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.494;DP=523;Dels=0.00;FS=2.415;HaplotypeScore=36.0235;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=22;MQRankSum=-8.647;QD=8.34;ReadPosRankSum=2.243;SB=-1.579e+03 GT:AD:DP:GQ:PL 0/1:182,338:523:99:4361,0,2565 chrIV 758048 . C T 2563.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.743;DP=486;Dels=0.00;FS=2.027;HaplotypeScore=37.6381;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=24;MQRankSum=8.954;QD=5.27;ReadPosRankSum=-2.282;SB=-1.102e+03 GT:AD:DP:GQ:PL 0/1:310,175:486:99:2593,0,3457 chrIV 758059 . C T 1451.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.581;DP=377;Dels=0.00;FS=40.228;HaplotypeScore=103.4685;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=25;MQRankSum=-2.402;QD=3.85;ReadPosRankSum=1.176;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:260,117:377:99:1481,0,2723 chrIV 758061 . G A 2305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.618;DP=365;Dels=0.00;FS=1.344;HaplotypeScore=180.5339;MLEAC=1;MLEAF=0.500;MQ=25.92;MQ0=26;MQRankSum=-8.190;QD=6.32;ReadPosRankSum=0.652;SB=-5.780e+02 GT:AD:DP:GQ:PL 0/1:131,234:365:99:2335,0,1615 chrIV 758070 . T C 429.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.554;DP=322;Dels=0.00;FS=18.042;HaplotypeScore=55.1021;MLEAC=1;MLEAF=0.500;MQ=25.17;MQ0=28;MQRankSum=7.377;QD=1.33;ReadPosRankSum=-4.008;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:264,56:322:99:459,0,2638 chrIV 758072 . A G 339.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.883;DP=311;Dels=0.00;FS=29.631;HaplotypeScore=11.3139;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=28;MQRankSum=6.382;QD=1.09;ReadPosRankSum=-2.522;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:262,48:311:99:369,0,2452 chrIV 758096 . A C 1691.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;DP=197;Dels=0.00;FS=3.981;HaplotypeScore=5.6790;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=33;MQRankSum=-1.111;QD=8.58;ReadPosRankSum=-1.758;SB=-8.690e+02 GT:AD:DP:GQ:PL 0/1:57,140:197:99:1721,0,106 chrIV 758114 . G A 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.855;DP=157;Dels=0.00;FS=49.565;HaplotypeScore=17.8899;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=16;MQRankSum=-4.573;QD=0.49;ReadPosRankSum=-2.877;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:99,58:157:99:107,0,1217 chrIV 758124 . A G 1410 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.701;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=12;MQRankSum=-1.531;QD=11.02;ReadPosRankSum=4.701;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,120:128:99:1443,168,0 chrIV 758141 . G A 766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.298;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.2447;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=9;MQRankSum=0.717;QD=5.32;ReadPosRankSum=2.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,68:144:99:796,0,754 chrIV 758150 . C T 2009 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=24.4894;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=6;MQRankSum=5.386;QD=13.30;ReadPosRankSum=-2.224;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:16,135:151:99:2042,182,0 chrIV 758156 . A G 2191 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.281;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=5;MQRankSum=5.310;QD=13.96;ReadPosRankSum=-1.792;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:16,141:157:99:2224,200,0 chrIV 758162 . C T 2469 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=5;QD=14.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2502,294,0 chrIV 758172 . T C 2970 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.256;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=29.1905;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=2;MQRankSum=4.919;QD=15.39;ReadPosRankSum=-0.512;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,178:193:99:3003,317,0 chrIV 758180 . G A 3166 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.162;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=30.1694;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=1;MQRankSum=5.379;QD=15.29;ReadPosRankSum=1.375;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,194:207:99:3199,360,0 chrIV 758182 . C A 1077.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.712;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=27.5321;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=2;MQRankSum=1.206;QD=5.13;ReadPosRankSum=-0.117;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,110:210:99:1107,0,1373 chrIV 758219 . A T 3287.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.627;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=34;MQRankSum=7.551;QD=10.99;ReadPosRankSum=3.641;SB=3.00 GT:AD:DP:GQ:PL 1/1:72,227:299:99:3287,244,0 chrIV 758262 . C T 386.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.458;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=29.9072;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=42;MQRankSum=0.843;QD=2.17;ReadPosRankSum=1.116;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,60:178:99:416,0,1191 chrIV 758264 . G A 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.193;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.6946;MLEAC=1;MLEAF=0.500;MQ=20.78;MQ0=42;MQRankSum=1.218;QD=2.06;ReadPosRankSum=-0.451;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,66:173:99:386,0,1116 chrIV 758288 . C A 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=16.83;MQ0=31;MQRankSum=0.857;QD=0.68;ReadPosRankSum=-0.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,15:90:91:91,0,487 chrIV 758306 . A G 141.19 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=13.94;MQ0=17;MQRankSum=-0.087;QD=3.44;ReadPosRankSum=0.548;SB=1.85 GT:AD:DP:GQ:PL 1/1:19,22:41:8:173,8,0 chrIV 758310 . T C 162.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=29;Dels=0.00;FS=29.117;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=13.20;MQ0=10;MQRankSum=-2.369;QD=5.59;ReadPosRankSum=2.606;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:3,24:29:27:195,27,0 chrIV 758318 . A G 100.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.212;DP=22;Dels=0.00;FS=6.368;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=11.96;MQ0=9;MQRankSum=1.670;QD=4.55;ReadPosRankSum=-1.545;SB=-6.417e+01 GT:AD:DP:GQ:PL 1/1:8,14:22:18:133,18,0 chrIV 758348 . A G 35.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=28;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.13;MQ0=24;MQRankSum=0.727;QD=1.28;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,25:28:9:68,9,0 chrIV 758364 . T C 35.97 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.79;MQ0=26;QD=1.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:9:68,9,0 chrIV 759086 . A T 46.04 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=8.79;MQ0=42;QD=0.67;SB=9.47 GT:AD:DP:GQ:PL 1/1:1,44:69:9:78,9,0 chrIV 759116 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.35;MQ0=49;QD=0.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,66:67:9:75,9,0 chrIV 759136 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.94;MQ0=45;QD=0.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,19:56:6:49,6,0 chrIV 759213 . G A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.717;DP=150;Dels=0.00;FS=38.318;HaplotypeScore=11.3904;MLEAC=1;MLEAF=0.500;MQ=10.55;MQ0=76;MQRankSum=1.227;QD=0.11;ReadPosRankSum=-2.185;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,16:150:46:46,0,306 chrIV 759222 . C T 165.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;DP=158;Dels=0.00;FS=128.183;HaplotypeScore=7.4470;MLEAC=1;MLEAF=0.500;MQ=10.36;MQ0=81;MQRankSum=3.065;QD=1.04;ReadPosRankSum=-1.824;SB=-4.110e+01 GT:AD:DP:GQ:PL 0/1:105,53:158:14:195,0,14 chrIV 759224 . G A 163.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;DP=163;Dels=0.00;FS=138.304;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=10.35;MQ0=82;MQRankSum=2.987;QD=1.00;ReadPosRankSum=-2.269;SB=-4.112e+01 GT:AD:DP:GQ:PL 0/1:106,56:163:13:193,0,13 chrIV 759248 . C A 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.502;DP=160;Dels=0.00;FS=45.080;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=10.95;MQ0=65;MQRankSum=0.110;QD=0.66;ReadPosRankSum=1.726;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:126,34:160:99:136,0,159 chrIV 759278 . A T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DP=111;Dels=0.00;FS=3.074;HaplotypeScore=22.2072;MLEAC=1;MLEAF=0.500;MQ=11.34;MQ0=42;MQRankSum=-0.970;QD=0.60;ReadPosRankSum=-1.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,25:111:97:97,0,143 chrIV 759302 . T C 58.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;DP=52;Dels=0.00;FS=4.559;HaplotypeScore=5.5710;MLEAC=2;MLEAF=1.00;MQ=8.02;MQ0=27;MQRankSum=4.188;QD=1.13;ReadPosRankSum=2.765;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:31,21:52:12:91,12,0 chrIV 759468 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=15.91;MQ0=25;QD=0.26;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,64:64:6:48,6,0 chrIV 759494 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=2;QD=0.56;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,30:30:6:48,6,0 chrIV 759500 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.41;MQ0=2;QD=0.55;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,29:29:6:47,6,0 chrIV 759506 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=0;QD=0.73;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:51,6,0 chrIV 759593 . C T 73.51 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.80;MQ0=1;QD=3.06;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:106,12,0 chrIV 759606 . C T 87.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;DP=47;Dels=0.00;FS=61.878;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=1;MQRankSum=-2.342;QD=1.85;ReadPosRankSum=4.416;SB=-3.006e+00 GT:AD:DP:GQ:PL 0/1:13,34:47:99:117,0,186 chrIV 759608 . G A 76.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DP=50;Dels=0.00;FS=64.372;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=25.81;MQ0=1;MQRankSum=-1.291;QD=1.52;ReadPosRankSum=4.501;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:15,35:50:99:106,0,205 chrIV 759650 . G A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.381;DP=149;Dels=0.00;FS=166.140;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=10;MQRankSum=-2.027;QD=0.48;ReadPosRankSum=-4.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,81:149:99:101,0,856 chrIV 759660 . A G 1176 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3298;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=12;QD=7.69;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:1209,126,0 chrIV 759662 . G A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;DP=154;Dels=0.00;FS=192.191;HaplotypeScore=3.3298;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=12;MQRankSum=-0.943;QD=0.14;ReadPosRankSum=-4.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,77:154:52:52,0,873 chrIV 759677 . G A 625.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.838;DP=148;Dels=0.00;FS=120.079;HaplotypeScore=14.3687;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=12;MQRankSum=1.022;QD=4.22;ReadPosRankSum=-0.192;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:88,60:148:99:655,0,257 chrIV 759708 . T C 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.896;DP=77;Dels=0.00;FS=16.817;HaplotypeScore=11.7632;MLEAC=1;MLEAF=0.500;MQ=26.68;MQ0=5;MQRankSum=-1.197;QD=2.12;ReadPosRankSum=-0.018;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:49,27:77:99:193,0,99 chrIV 759714 . A G 181.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.490;DP=41;Dels=0.00;FS=18.470;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=3;MQRankSum=0.704;QD=4.42;ReadPosRankSum=2.815;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:3,38:41:24:214,24,0 chrIV 759716 . G A 55.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DP=35;Dels=0.00;FS=12.473;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=3;MQRankSum=-2.416;QD=1.57;ReadPosRankSum=2.097;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:26,9:35:32:85,0,32 chrIV 759725 . T A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843;DP=57;Dels=0.00;FS=16.686;HaplotypeScore=10.3607;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=2;MQRankSum=1.624;QD=0.25;ReadPosRankSum=-2.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,33:57:44:44,0,81 chrIV 759734 . A G 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.276;DP=55;Dels=0.00;FS=11.802;HaplotypeScore=5.5791;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=2;MQRankSum=3.056;QD=2.22;ReadPosRankSum=2.249;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,39:55:76:152,0,76 chrIV 759738 . A G 124.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;DP=52;Dels=0.00;FS=20.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=2;MQRankSum=3.622;QD=2.38;ReadPosRankSum=1.682;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:7,45:52:76:154,0,76 chrIV 759741 . C G 127.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;DP=55;Dels=0.00;FS=21.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=2;MQRankSum=3.636;QD=2.31;ReadPosRankSum=2.297;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:7,48:55:51:157,0,51 chrIV 759758 . G A 269 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.34;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:36:302,36,0 chrIV 759760 . A C 273 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.40;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:36:306,36,0 chrIV 759765 . T C 403 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;MQRankSum=0.866;QD=4.80;ReadPosRankSum=1.650;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:51:436,51,0 chrIV 759770 . C T 634 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=6.89;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:75:667,75,0 chrIV 759771 . A G 637 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=6.78;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:78:670,78,0 chrIV 759776 . T C 825 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.78;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:858,102,0 chrIV 760201 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.38;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1893,207,0 chrIV 760206 . G C 1848 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.76;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1881,213,0 chrIV 760259 . G T 3109 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.29;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3142,342,0 chrIV 760350 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.50;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3689,420,0 chrIV 760583 . G C 3080 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3113,363,0 chrIV 760775 . T C 2464 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1978;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.88;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2497,294,0 chrIV 761151 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3528,387,0 chrIV 761335 . T C 1731 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.78;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1764,198,0 chrIV 761375 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.58;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1907,216,0 chrIV 761459 . C A 1884 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.81;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1917,207,0 chrIV 761692 . C A 2860 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2893,315,0 chrIV 761839 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.6633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3711,432,0 chrIV 762170 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.9536;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.97;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3559,387,0 chrIV 762450 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.59;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4145,450,0 chrIV 762896 . T A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.69;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4516,516,0 chrIV 763036 . T C 6096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=14.5594;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.244;QD=21.17;ReadPosRankSum=1.708;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:1,284:288:99:6096,705,0 chrIV 763076 . A T 6297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=268;Dels=0.00;FS=3.751;HaplotypeScore=16.9944;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.259;QD=23.50;ReadPosRankSum=1.667;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:6297,696,0 chrIV 763207 . A G 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=263;Dels=0.00;FS=5.901;HaplotypeScore=20.5143;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.636;QD=20.13;ReadPosRankSum=2.897;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:3,259:263:99:5294,615,0 chrIV 763658 . A C 4775.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.21;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:4775,543,0 chrIV 764003 . C T 984 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.36;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1017,111,0 chrIV 764240 . T A 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.030;QD=22.60;ReadPosRankSum=1.687;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3458,393,0 chrIV 764266 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.27;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3128,342,0 chrIV 764292 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.17;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2955,318,0 chrIV 764433 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.5973;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.90;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3350,369,0 chrIV 764556 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.11;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3199,366,0 chrIV 764643 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.92;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3058,354,0 chrIV 764690 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.31;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2917,318,0 chrIV 764691 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.40;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2909,318,0 chrIV 764712 . C G 2869 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.79;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2902,333,0 chrIV 764817 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.84;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3473,399,0 chrIV 764844 . T A 3107 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.54;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3140,345,0 chrIV 765017 . T A 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.170;QD=23.04;ReadPosRankSum=1.713;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4262,465,0 chrIV 765331 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.5047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4472,483,0 chrIV 765398 . T A 4280.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4280,468,0 chrIV 765553 . C T 2333 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.02;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2366,267,0 chrIV 766047 . A C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=187;Dels=0.00;FS=6.442;HaplotypeScore=17.7525;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.293;QD=21.40;ReadPosRankSum=2.395;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:2,178:187:99:4002,465,0 chrIV 766577 . A T 619 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=49;Dels=0.00;FS=2.879;HaplotypeScore=5.5366;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;MQRankSum=-1.592;QD=12.63;ReadPosRankSum=2.350;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:72:652,72,0 chrIV 766585 . G T 497 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.090;DP=55;Dels=0.04;FS=1.639;HaplotypeScore=49.3674;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.223;QD=9.04;ReadPosRankSum=2.483;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:7,46:53:46:530,46,0 chrIV 766586 . A G 517 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.292;DP=53;Dels=0.00;FS=4.974;HaplotypeScore=49.3674;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;MQRankSum=-1.792;QD=9.75;ReadPosRankSum=4.420;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:12,40:53:66:550,66,0 chrIV 766621 . G A 911 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=9.5778;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.52;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:944,102,0 chrIV 766688 . T G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.268;QD=24.05;ReadPosRankSum=2.805;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2390,270,0 chrIV 766916 . T C 4722.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.76;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4722,546,0 chrIV 766973 . G A 4459.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.4201;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.33;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4459,480,0 chrIV 767007 . C T 4979.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.2560;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.84;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4979,543,0 chrIV 767342 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.72;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3265,366,0 chrIV 767443 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=168;Dels=0.00;FS=6.061;HaplotypeScore=13.9176;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.753;QD=21.62;ReadPosRankSum=2.958;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3632,411,0 chrIV 767675 . C T 4347.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.74;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4347,468,0 chrIV 767789 . G A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.64;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3871,414,0 chrIV 768037 . T C 1339 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1372,156,0 chrIV 768073 . A T 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.604;QD=22.77;ReadPosRankSum=1.652;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1012,114,0 chrIV 768208 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.59;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1951,222,0 chrIV 768306 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.62;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1570,168,0 chrIV 768366 . C A 1926 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.71;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:1959,213,0 chrIV 768390 . T A 2340 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.64;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2373,255,0 chrIV 769038 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=175;Dels=0.00;FS=2.937;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.364;QD=21.82;ReadPosRankSum=2.350;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,170:175:99:3819,438,0 chrIV 769356 . G T 3002 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.1558;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=19.37;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3035,336,0 chrIV 769372 . C A 2740 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.77;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2773,303,0 chrIV 769508 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.77;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2406,261,0 chrIV 769848 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.40;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3012,333,0 chrIV 769883 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.70;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2988,333,0 chrIV 769896 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.18;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2853,330,0 chrIV 770035 . T C 2816 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.97;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2849,318,0 chrIV 770047 . A G 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=137;Dels=0.00;FS=2.996;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.389;QD=18.93;ReadPosRankSum=2.395;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2627,297,0 chrIV 770297 . T C 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.5288;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.087;QD=21.84;ReadPosRankSum=2.144;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:4,107:113:99:2501,263,0 chrIV 770352 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.86;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2479,273,0 chrIV 770770 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.57;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4669,519,0 chrIV 771211 . T C 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=247;Dels=0.00;FS=6.969;HaplotypeScore=14.8522;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.780;QD=19.48;ReadPosRankSum=2.410;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:4811,558,0 chrIV 771632 . T A 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.122;QD=23.27;ReadPosRankSum=1.697;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2360,264,0 chrIV 772626 . T A 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=198;Dels=0.00;FS=2.896;HaplotypeScore=14.3965;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.143;QD=24.27;ReadPosRankSum=2.425;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4805,528,0 chrIV 772698 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=3.485;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.533;QD=20.81;ReadPosRankSum=1.613;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3662,432,0 chrIV 773522 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=3.096;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.985;QD=21.04;ReadPosRankSum=1.698;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2221,249,0 chrIV 773532 . G C 2240 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.55;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2273,261,0 chrIV 773563 . A G 2348 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3080;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.35;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2381,267,0 chrIV 773652 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.72;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2064,228,0 chrIV 773670 . T C 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=2.926;HaplotypeScore=8.2347;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.555;QD=19.31;ReadPosRankSum=2.363;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2215,261,0 chrIV 773703 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.28;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2757,300,0 chrIV 773757 . T A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.26;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3373,369,0 chrIV 773893 . G C 3191 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.63;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3224,366,0 chrIV 774079 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.36;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3186,345,0 chrIV 774288 . A C 2260 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.94;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2293,264,0 chrIV 774345 . T C 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.476;QD=20.96;ReadPosRankSum=1.604;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2339,270,0 chrIV 774390 . T C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=112;Dels=0.00;FS=2.911;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.626;QD=21.73;ReadPosRankSum=2.406;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2467,285,0 chrIV 774536 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.40;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2923,318,0 chrIV 774730 . A G 2336 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2369,270,0 chrIV 774849 . T C 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.1868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.761;QD=22.40;ReadPosRankSum=1.667;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2430,285,0 chrIV 775287 . T C 4726.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.94;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4726,528,0 chrIV 775518 . T C 3982.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.4938;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.14;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3982,456,0 chrIV 775554 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.92;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3825,438,0 chrIV 775671 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.50;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2370,276,0 chrIV 775744 . T C 2085 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.24;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2118,243,0 chrIV 775941 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3583;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.02;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2220,237,0 chrIV 775992 . T A 2600 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.67;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2633,279,0 chrIV 775997 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.51;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2291,270,0 chrIV 776086 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.53;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3318,363,0 chrIV 776259 . C A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.81;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3286,360,0 chrIV 776284 . C G 2717 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.74;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2750,312,0 chrIV 776336 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.54;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2806,306,0 chrIV 776627 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=129;Dels=0.00;FS=11.738;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.602;QD=20.83;ReadPosRankSum=2.946;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2720,300,0 chrIV 776640 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.77;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2819,312,0 chrIV 776679 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.40;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2794,315,0 chrIV 776715 . A G 2769 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.8042;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.98;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2802,324,0 chrIV 776907 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.269;QD=20.90;ReadPosRankSum=1.710;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3281,381,0 chrIV 777029 . T C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=148;Dels=0.00;FS=9.393;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.678;QD=21.64;ReadPosRankSum=2.925;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3235,366,0 chrIV 777389 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.33;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3803,426,0 chrIV 777638 . A C 4155.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.83;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4155,471,0 chrIV 777671 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.3148;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.16;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4470,495,0 chrIV 778122 . C T 4710.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.64;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4710,502,0 chrIV 778301 . G A 4956.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.94;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4956,540,0 chrIV 778415 . C T 4588.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.06;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4588,492,0 chrIV 778463 . T C 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.996;QD=23.79;ReadPosRankSum=1.699;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4925,558,0 chrIV 778694 . G A 1933 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=24.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1966,216,0 chrIV 778709 . C T 1527 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=24.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1560,171,0 chrIV 778721 . G A 1243 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=25.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1276,141,0 chrIV 778722 . G A 1184 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=24.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1217,138,0 chrIV 778856 . C A 158.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=14.37;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:191,21,0 chrIV 778868 . C A 245 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=13.61;SB=-1.492e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:30:278,30,0 chrIV 779023 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.65;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1495,162,0 chrIV 779427 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.75;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2481,276,0 chrIV 779618 . C T 2093 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.75;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2126,231,0 chrIV 780011 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=137;Dels=0.00;FS=2.535;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.331;QD=21.82;ReadPosRankSum=2.640;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3022,345,0 chrIV 780027 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.95;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3040,345,0 chrIV 780200 . T A 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=4.576;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.228;QD=23.62;ReadPosRankSum=1.641;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3590,399,0 chrIV 780618 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.256;HaplotypeScore=12.9094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.256;QD=21.88;ReadPosRankSum=1.713;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3983,462,0 chrIV 780939 . G T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7176;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.09;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3417,378,0 chrIV 780966 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=4.111;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.388;QD=19.43;ReadPosRankSum=1.706;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2636,309,0 chrIV 780987 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.26;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2534,279,0 chrIV 781103 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=186;Dels=0.00;FS=3.457;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.374;QD=21.00;ReadPosRankSum=1.713;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3906,447,0 chrIV 781344 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.61;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3659,396,0 chrIV 781421 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.55;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3526,381,0 chrIV 781475 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.50;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3182,345,0 chrIV 781568 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.32;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3818,414,0 chrIV 781624 . A G 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.198;QD=22.09;ReadPosRankSum=1.658;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3125,354,0 chrIV 781717 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.9636;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.14;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3621,390,0 chrIV 782410 . A G 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.740;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.911;QD=21.52;ReadPosRankSum=1.696;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2120,237,0 chrIV 782863 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=123;Dels=0.00;FS=5.524;HaplotypeScore=9.3615;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.336;QD=20.84;ReadPosRankSum=2.943;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2596,297,0 chrIV 783406 . A G 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=3.687;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.893;QD=23.29;ReadPosRankSum=1.714;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4541,513,0 chrIV 783897 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.23;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3635,408,0 chrIV 784297 . T C 3174 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3207,366,0 chrIV 784537 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.24;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3257,354,0 chrIV 784809 . G T 2173 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.30;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2206,246,0 chrIV 785140 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.59;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2689,291,0 chrIV 785156 . C A 2655 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.24;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2688,306,0 chrIV 785443 . T C 2400 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.35;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2433,273,0 chrIV 785446 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.91;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2522,279,0 chrIV 785478 . T G 2565 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.59;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2598,294,0 chrIV 785712 . A G 2049 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.70;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2082,240,0 chrIV 785881 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.68;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1711,192,0 chrIV 785939 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.51;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1947,219,0 chrIV 786128 . T C 2338 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.8533;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.92;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2371,267,0 chrIV 786193 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.458;QD=22.18;ReadPosRankSum=1.699;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2384,273,0 chrIV 786207 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.115;QD=20.87;ReadPosRankSum=1.699;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2266,258,0 chrIV 786378 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.306;QD=21.75;ReadPosRankSum=1.679;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,64:69:99:1534,177,0 chrIV 786657 . T C 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.679;QD=21.19;ReadPosRankSum=1.698;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2216,252,0 chrIV 786837 . A T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3251,357,0 chrIV 786948 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.82;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2862,312,0 chrIV 787092 . A G 3138 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3171,366,0 chrIV 787173 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=3.039;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.025;QD=20.91;ReadPosRankSum=2.367;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3127,363,0 chrIV 787632 . T C 1934 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1967,222,0 chrIV 787723 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1933,210,0 chrIV 788330 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1855,201,0 chrIV 788528 . A G 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.235;QD=22.81;ReadPosRankSum=1.689;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1881,213,0 chrIV 788889 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3554,402,0 chrIV 789368 . T A 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=144;Dels=0.00;FS=8.517;HaplotypeScore=9.5829;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-2.000;QD=23.03;ReadPosRankSum=3.349;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3317,375,0 chrIV 789392 . C A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.78;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3424,390,0 chrIV 790216 . G T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.67;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4217,471,0 chrIV 790489 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2994,348,0 chrIV 790931 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3301;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.86;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2616,282,0 chrIV 790957 . T C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=107;Dels=0.00;FS=8.187;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.817;QD=19.70;ReadPosRankSum=2.404;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2141,246,0 chrIV 791128 . A G 2237 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.51;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2270,255,0 chrIV 791148 . A T 2067 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.53;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2100,231,0 chrIV 791482 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1799,207,0 chrIV 791821 . C T 1023 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1056,123,0 chrIV 791869 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=21.62;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1438,156,0 chrIV 792170 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.75;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1091,120,0 chrIV 792541 . G A 4786.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4786,549,0 chrIV 792642 . C G 4312.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.35;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4312,483,0 chrIV 793089 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.89;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2944,324,0 chrIV 793254 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.19;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3418,393,0 chrIV 793726 . A T 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.322;QD=23.53;ReadPosRankSum=1.706;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3209,348,0 chrIV 793822 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.80;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2112,222,0 chrIV 793980 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.23;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2983,339,0 chrIV 794057 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.270;QD=23.24;ReadPosRankSum=1.706;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3171,360,0 chrIV 794075 . C T 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.492;QD=23.20;ReadPosRankSum=1.626;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3049,333,0 chrIV 794507 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.2936;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4101,477,0 chrIV 794676 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=31.8557;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=17.48;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3145,351,0 chrIV 794820 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.94;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3686,414,0 chrIV 795302 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=23.06;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3989,435,0 chrIV 795341 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=6.673;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=0.059;QD=19.99;ReadPosRankSum=2.423;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3759,435,0 chrIV 795372 . G A 4445.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8815;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.34;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4445,477,0 chrIV 795537 . C G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=20.88;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3738,435,0 chrIV 795541 . A G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=20.82;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3831,441,0 chrIV 795591 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.24;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3290,363,0 chrIV 795652 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=18.79;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3665,402,0 chrIV 795663 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=18.23;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3591,399,0 chrIV 795676 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=16.79;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3324,369,0 chrIV 795696 . A T 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.495;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;MQRankSum=-0.374;QD=17.53;ReadPosRankSum=1.645;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3489,381,0 chrIV 795718 . T C 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=-0.560;QD=15.12;ReadPosRankSum=1.715;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3027,354,0 chrIV 795802 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.37;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3175,345,0 chrIV 795803 . G C 3004 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=17.99;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3037,342,0 chrIV 795883 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1557;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.63;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3828,435,0 chrIV 795893 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.8991;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=21.63;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4110,447,0 chrIV 796104 . T A 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.129;QD=20.30;ReadPosRankSum=1.643;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3179,360,0 chrIV 796127 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.82;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2865,309,0 chrIV 796175 . G T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4716;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.17;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3547,393,0 chrIV 796541 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=21.4794;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.90;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3636,408,0 chrIV 796580 . A T 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=141;Dels=0.00;FS=2.990;HaplotypeScore=14.8397;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.193;QD=18.44;ReadPosRankSum=2.306;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:3,136:141:99:2633,291,0 chrIV 796727 . G C 3207 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.52;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3240,369,0 chrIV 796994 . C T 4680.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.7645;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4680,516,0 chrIV 797091 . G A 5583.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=18.8546;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.07;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5583,627,0 chrIV 797366 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.35;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3245,354,0 chrIV 797372 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=171;Dels=0.00;FS=5.680;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.500;QD=19.24;ReadPosRankSum=2.888;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3290,366,0 chrIV 797669 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=186;Dels=0.00;FS=7.470;HaplotypeScore=12.8094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.063;QD=21.53;ReadPosRankSum=2.397;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4004,447,0 chrIV 798095 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.094;QD=23.34;ReadPosRankSum=1.709;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3571,405,0 chrIV 798512 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.39;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3341,366,0 chrIV 798584 . A C 2945 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.81;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2978,339,0 chrIV 798980 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.3708;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.23;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3232,354,0 chrIV 799118 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.99;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3449,387,0 chrIV 799997 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.43;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4136,474,0 chrIV 800015 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=201;Dels=0.00;FS=3.829;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.315;QD=20.67;ReadPosRankSum=1.680;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4155,480,0 chrIV 800174 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4621;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.17;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3753,411,0 chrIV 800342 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3782,411,0 chrIV 800393 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.92;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3445,390,0 chrIV 800479 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.94;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4489,486,0 chrIV 800855 . T G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.5989;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.67;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3560,408,0 chrIV 800862 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4294;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.617;QD=20.75;ReadPosRankSum=1.175;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3632,399,0 chrIV 800984 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.0547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.68;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3860,429,0 chrIV 801463 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=150;Dels=0.00;FS=3.024;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.767;QD=21.90;ReadPosRankSum=2.417;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3285,375,0 chrIV 801527 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.23;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3787,417,0 chrIV 801845 . G A 4500.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.74;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4500,498,0 chrIV 801939 . C T 4892.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.8297;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.38;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4892,537,0 chrIV 801982 . C T 4733.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.1037;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.97;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4733,513,0 chrIV 802100 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=227;Dels=0.00;FS=5.230;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.112;QD=18.50;ReadPosRankSum=3.406;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:4,222:227:99:4199,483,0 chrIV 802112 . A T 4353.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.35;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4353,489,0 chrIV 802328 . A C 2825 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.78;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2858,327,0 chrIV 802553 . A C 1985 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.68;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2018,234,0 chrIV 802610 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=23.25;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2381,264,0 chrIV 802627 . A C 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=0.201;QD=23.03;ReadPosRankSum=1.659;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2244,261,0 chrIV 802666 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=3.842;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.747;QD=22.28;ReadPosRankSum=1.700;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2484,282,0 chrIV 802711 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=22.82;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2429,273,0 chrIV 802822 . T A 1121 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=21.15;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1154,126,0 chrIV 802824 . C T 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.133;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=0;MQRankSum=-1.732;QD=21.29;ReadPosRankSum=1.266;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1140,123,0 chrIV 802835 . T C 1119 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=19.63;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1152,132,0 chrIV 802842 . A C 879 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=62.8230;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=17.58;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:912,108,0 chrIV 802863 . C T 16.16 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.051;QD=0.37;ReadPosRankSum=-2.685;SB=-4.050e+00 GT:AD:DP:GQ:PL 0/1:38,6:44:17:46,0,17 chrIV 802878 . T A 917 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:950,102,0 chrIV 802880 . A G 860 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:893,102,0 chrIV 802905 . T C 718.27 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.519;DP=65;Dels=0.00;FS=9.402;HaplotypeScore=3.9008;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=4;MQRankSum=2.930;QD=11.05;ReadPosRankSum=1.165;SB=-3.174e+00 GT:AD:DP:GQ:PL 0/1:11,54:65:9:748,0,9 chrIV 802914 . A T 704.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;DP=62;Dels=0.00;FS=8.953;HaplotypeScore=3.7459;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=7;MQRankSum=2.892;QD=11.36;ReadPosRankSum=-4.255;SB=-2.332e+00 GT:AD:DP:GQ:PL 0/1:14,48:62:13:734,0,13 chrIV 802915 . A G 721.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;DP=62;Dels=0.00;FS=8.953;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=7;MQRankSum=2.892;QD=11.63;ReadPosRankSum=-4.255;SB=-2.332e+00 GT:AD:DP:GQ:PL 0/1:14,48:62:13:751,0,13 chrIV 803024 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.55;MQ0=16;QD=0.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,8:23:6:47,6,0 chrIV 803030 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.00;MQ0=17;QD=0.64;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:15,10:25:6:47,6,0 chrIV 803092 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.652;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=20.54;MQ0=2;MQRankSum=-1.307;QD=1.09;ReadPosRankSum=2.219;SB=1.24 GT:AD:DP:GQ:PL 1/1:5,6:11:6:43,6,0 chrIV 803738 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=1.78;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:49,6,0 chrIV 803751 . A T 60.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=4.32;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:93,12,0 chrIV 803753 . A G 80.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=5.73;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:113,15,0 chrIV 803788 . T C 217 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=1;QD=5.17;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:250,33,0 chrIV 803792 . A G 219 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=1;QD=4.76;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,46:46:33:252,33,0 chrIV 803795 . A G 220 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=1;QD=4.58;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:33:253,33,0 chrIV 803804 . G A 219 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.84;MQ0=1;QD=4.47;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,48:49:33:252,33,0 chrIV 803809 . A C 226 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.56;MQ0=2;QD=4.35;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,52:52:33:259,33,0 chrIV 803973 . A G 609 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.77;MQ0=21;QD=9.23;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:84:642,84,0 chrIV 803974 . G A 634 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.47;MQ0=21;QD=9.46;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:87:667,87,0 chrIV 803989 . G A 658 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.62;MQ0=18;QD=8.22;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:90:691,90,0 chrIV 804011 . G A 1227 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=18.23;MQ0=23;QD=10.67;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1260,153,0 chrIV 804088 . A C 505 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=8;QD=18.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:60:538,60,0 chrIV 804102 . C A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=2;QD=2.01;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 804179 . C T 65.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.20;MQ0=0;QD=4.37;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:98,12,0 chrIV 804185 . T G 148.06 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=0;QD=7.79;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:181,21,0 chrIV 804191 . C A 220.01 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=0;QD=10.00;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:253,27,0 chrIV 804209 . C T 265 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=0;QD=9.46;SB=-1.080e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:298,33,0 chrIV 804216 . C T 299 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;QD=9.97;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:36:332,36,0 chrIV 804217 . A G 291 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;QD=9.70;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:36:324,36,0 chrIV 804223 . A C 317 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=9.32;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:39:350,39,0 chrIV 804227 . T G 299 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=0;QD=9.65;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:39:332,39,0 chrIV 804228 . C T 323 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=0;QD=10.42;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:39:356,39,0 chrIV 804232 . G C 311 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.31;MQ0=0;QD=9.72;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:39:344,39,0 chrIV 804252 . C G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=9.00;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:231,27,0 chrIV 804253 . A G 215.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=9.77;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:248,27,0 chrIV 804255 . A G 216.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=9.82;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:249,27,0 chrIV 804259 . T C 205.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=9.32;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:238,27,0 chrIV 804261 . A G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=9.00;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:231,27,0 chrIV 804264 . A G 211.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=9.59;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:244,27,0 chrIV 804266 . T C 206.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=9.36;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:239,27,0 chrIV 804282 . G A 76.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=5.89;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:109,12,0 chrIV 804294 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.48;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:51,6,0 chrIV 805589 . T G 923 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=75;QD=6.84;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:75,60:135:99:956,111,0 chrIV 805615 . G A 1369 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=28;QD=15.21;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:28,59:90:99:1402,150,0 chrIV 805658 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=21.34;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1655,183,0 chrIV 805687 . A G 1956 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=21.49;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1989,228,0 chrIV 805798 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.98;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2009,231,0 chrIV 806142 . G T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.44;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3422,366,0 chrIV 806292 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=22.87;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3316,366,0 chrIV 806407 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=4.260;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.319;QD=23.36;ReadPosRankSum=1.664;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3550,396,0 chrIV 806486 . G C 3748.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=21.54;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3748,423,0 chrIV 806513 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.416;DP=197;Dels=0.00;FS=8.970;HaplotypeScore=1.9748;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;MQRankSum=-1.147;QD=17.84;ReadPosRankSum=3.398;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:4,193:197:99:3514,396,0 chrIV 806514 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.9748;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=18.02;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3550,402,0 chrIV 806528 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.4282;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=-1.111;QD=17.62;ReadPosRankSum=1.699;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:3736,432,0 chrIV 806564 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.5239;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=17.17;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:3948,441,0 chrIV 806584 . T C 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.627;QD=16.77;ReadPosRankSum=2.362;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:3774,438,0 chrIV 806992 . T C 6284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=290;Dels=0.00;FS=9.726;HaplotypeScore=19.9538;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.380;QD=21.67;ReadPosRankSum=2.347;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:2,285:290:99:6284,714,0 chrIV 807121 . A G 6394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=22.3199;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.540;QD=21.97;ReadPosRankSum=1.720;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,289:291:99:6394,729,0 chrIV 807222 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=193;Dels=0.00;FS=2.675;HaplotypeScore=12.9962;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-2.411;QD=21.42;ReadPosRankSum=2.398;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4134,480,0 chrIV 807409 . T C 4538.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.8414;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.01;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4538,522,0 chrIV 807628 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.57;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3238,354,0 chrIV 807916 . T G 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.433;QD=19.37;ReadPosRankSum=1.701;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2222,255,0 chrIV 807918 . A G 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=4.582;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.309;QD=20.87;ReadPosRankSum=1.701;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2371,264,0 chrIV 808086 . T A 3040 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.4875;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=21.71;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3073,336,0 chrIV 808094 . T A 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=140;Dels=0.01;FS=3.368;HaplotypeScore=5.4503;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.187;QD=20.49;ReadPosRankSum=1.682;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2902,321,0 chrIV 808234 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=10.0434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.007;QD=19.99;ReadPosRankSum=2.424;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3799,438,0 chrIV 808258 . T G 4138.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.89;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4138,483,0 chrIV 808464 . A G 6042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=255;Dels=0.00;FS=6.862;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.747;QD=23.69;ReadPosRankSum=2.430;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:6042,681,0 chrIV 808521 . C T 5086.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.3204;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.33;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5086,561,0 chrIV 808542 . T C 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DP=242;Dels=0.00;FS=2.089;HaplotypeScore=11.4954;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.213;QD=20.43;ReadPosRankSum=2.058;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:4,237:242:99:4945,542,0 chrIV 808649 . A G 4745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=219;Dels=0.00;FS=5.463;HaplotypeScore=19.8302;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.610;QD=21.67;ReadPosRankSum=2.959;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:4745,537,0 chrIV 808803 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=18.74;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3181,351,0 chrIV 808808 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.90;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3189,348,0 chrIV 808830 . T A 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.335;QD=19.74;ReadPosRankSum=1.713;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3573,384,0 chrIV 808940 . C A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.73;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4794,525,0 chrIV 808977 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=186;Dels=0.00;FS=3.032;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.406;QD=20.79;ReadPosRankSum=2.423;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3867,441,0 chrIV 808996 . C G 4096.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.1387;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.69;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4096,462,0 chrIV 809670 . C T 5727.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=16.1014;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.91;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5727,624,0 chrIV 810443 . A C 787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.502;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.545;QD=16.74;ReadPosRankSum=2.851;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,44:47:93:820,93,0 chrIV 810702 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=61.60;MQ0=0;QD=23.06;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2085,228,0 chrIV 811032 . A G 2862 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2895,324,0 chrIV 811697 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=5.331;HaplotypeScore=16.4510;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;MQRankSum=-0.761;QD=22.28;ReadPosRankSum=1.666;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3543,399,0 chrIV 811787 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.30;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2716,312,0 chrIV 811792 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.51;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2720,297,0 chrIV 811992 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.46;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3414,375,0 chrIV 812212 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9273;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.97;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3813,423,0 chrIV 812580 . A G 5356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.870;QD=23.29;ReadPosRankSum=1.717;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:5356,612,0 chrIV 812667 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.54;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3121,342,0 chrIV 812940 . T C 855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.540;QD=23.75;ReadPosRankSum=1.636;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:99:888,99,0 chrIV 813253 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=24.99;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3374,363,0 chrIV 813568 . G A 4864.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.3857;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.94;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4864,552,0 chrIV 813874 . A T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.2932;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.40;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4815,528,0 chrIV 814094 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.144;DP=194;Dels=0.00;FS=3.027;HaplotypeScore=10.1394;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.139;QD=20.46;ReadPosRankSum=2.424;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:3969,444,0 chrIV 814114 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.30;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4059,462,0 chrIV 814278 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.215;QD=23.58;ReadPosRankSum=1.163;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:1,200:204:99:4811,513,0 chrIV 814490 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4125,459,0 chrIV 814815 . A G 2508 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.08;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2541,291,0 chrIV 815156 . T A 3068 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3101,342,0 chrIV 815495 . A G 3057 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3090,351,0 chrIV 815632 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.53;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4195,444,0 chrIV 815666 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3975,444,0 chrIV 815797 . C G 4587.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.4280;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.40;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4587,516,0 chrIV 815851 . A G 4562.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.0948;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.64;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4562,519,0 chrIV 815880 . G A 5172.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.35;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5172,556,0 chrIV 816386 . C G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.90;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3252,375,0 chrIV 816398 . A G 2711 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.3387;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.08;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2744,306,0 chrIV 816494 . A G 2832 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.67;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2865,330,0 chrIV 816619 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.93;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2566,279,0 chrIV 817854 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=15.1331;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.68;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2619,285,0 chrIV 817919 . C T 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DP=132;Dels=0.00;FS=4.485;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.443;QD=22.90;ReadPosRankSum=-1.128;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3056,317,0 chrIV 818507 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1838,201,0 chrIV 818692 . C T 1086 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1119,126,0 chrIV 818791 . T C 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.350;QD=21.48;ReadPosRankSum=2.551;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:99:1343,153,0 chrIV 818813 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.09;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1226,144,0 chrIV 819242 . A G 2197 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.33;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2230,258,0 chrIV 819378 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.20;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1730,189,0 chrIV 819380 . T A 1696 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.19;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1729,183,0 chrIV 819541 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.25;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2785,300,0 chrIV 819584 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5545;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.46;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2706,294,0 chrIV 819678 . C T 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DP=115;Dels=0.00;FS=3.089;HaplotypeScore=8.4809;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.021;QD=24.01;ReadPosRankSum=-1.361;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,111:115:99:2794,281,0 chrIV 819910 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=153;Dels=0.00;FS=3.002;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.331;QD=21.55;ReadPosRankSum=2.272;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3297,381,0 chrIV 820028 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2705,294,0 chrIV 820170 . T A 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=110;Dels=0.00;FS=3.090;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.071;QD=21.85;ReadPosRankSum=1.638;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2436,273,0 chrIV 820472 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=143;Dels=0.00;FS=2.565;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.528;QD=23.11;ReadPosRankSum=2.398;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3305,372,0 chrIV 820502 . C A 3011 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.09;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3044,327,0 chrIV 821822 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.512;QD=21.81;ReadPosRankSum=1.705;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2781,321,0 chrIV 822225 . G C 2406 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2439,279,0 chrIV 822347 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.87;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2434,261,0 chrIV 822353 . T A 2245 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.01;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2278,249,0 chrIV 822554 . T C 1990 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.17;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2023,231,0 chrIV 822572 . T A 1888 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.21;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1921,210,0 chrIV 822719 . T C 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.681;QD=22.16;ReadPosRankSum=1.615;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2027,231,0 chrIV 823198 . T G 2963 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2996,339,0 chrIV 823234 . T C 2568 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.35;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2601,300,0 chrIV 823627 . A G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=146;Dels=0.00;FS=3.035;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.466;QD=21.42;ReadPosRankSum=2.365;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3161,360,0 chrIV 823665 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=156;Dels=0.00;FS=7.136;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.237;QD=22.06;ReadPosRankSum=2.418;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3441,390,0 chrIV 824078 . T C 2638 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.94;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2671,309,0 chrIV 824244 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.10;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3045,330,0 chrIV 825422 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2941,336,0 chrIV 825834 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=4.053;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.109;QD=21.85;ReadPosRankSum=1.654;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1978,222,0 chrIV 826027 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.09;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2924,315,0 chrIV 826114 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.872;QD=23.36;ReadPosRankSum=1.708;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3387,393,0 chrIV 826184 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.79;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3400,381,0 chrIV 826194 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=159;Dels=0.00;FS=6.051;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.605;QD=21.09;ReadPosRankSum=2.956;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3354,378,0 chrIV 826327 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.97;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3089,342,0 chrIV 826402 . A G 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.995;QD=21.97;ReadPosRankSum=1.708;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3131,357,0 chrIV 826825 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.86;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3406,369,0 chrIV 827222 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.30;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2428,264,0 chrIV 827425 . G A 383 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=4.56;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:45:416,45,0 chrIV 827442 . A T 804 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;QD=7.58;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:93:837,93,0 chrIV 827443 . T C 813 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=7.60;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:96:846,96,0 chrIV 827581 . T C 2446 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=23.08;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2479,282,0 chrIV 827769 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.17;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2760,312,0 chrIV 828045 . A C 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.091;DP=96;Dels=0.00;FS=3.049;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.757;QD=20.71;ReadPosRankSum=2.373;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2021,234,0 chrIV 828290 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2801,297,0 chrIV 828607 . T C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=126;Dels=0.00;FS=2.856;HaplotypeScore=9.1348;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.803;QD=22.21;ReadPosRankSum=2.410;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2832,330,0 chrIV 828630 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.60;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2745,306,0 chrIV 828705 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1402;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.89;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3633,411,0 chrIV 828748 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.791;QD=22.42;ReadPosRankSum=1.694;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4125,471,0 chrIV 829692 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.32;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3684,423,0 chrIV 829848 . T A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6201;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.66;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4168,453,0 chrIV 830066 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=24.55;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3560,399,0 chrIV 830234 . C G 3200 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=23.19;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3233,360,0 chrIV 830274 . A T 2364 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.906;DP=109;Dels=0.00;FS=3.562;HaplotypeScore=4.5556;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.493;QD=21.69;ReadPosRankSum=1.319;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2397,261,0 chrIV 830276 . A G 2233 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.755;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3443;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=0.546;QD=20.68;ReadPosRankSum=2.287;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,104:108:99:2266,255,0 chrIV 830278 . C A 2333 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1764;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=21.80;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2366,255,0 chrIV 830619 . A G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=91;Dels=0.00;FS=3.632;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.231;QD=22.59;ReadPosRankSum=1.694;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2089,240,0 chrIV 830754 . A T 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.949;QD=22.78;ReadPosRankSum=1.702;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2653,282,0 chrIV 831259 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.29;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3900,444,0 chrIV 831279 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=4.357;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.423;QD=21.57;ReadPosRankSum=1.694;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3882,432,0 chrIV 831797 . G A 1186 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.5166;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1219,132,0 chrIV 831877 . T C 204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.912;DP=65;Dels=0.00;FS=4.621;HaplotypeScore=49.1976;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=1.221;QD=3.14;ReadPosRankSum=-3.838;SB=-8.014e+00 GT:AD:DP:GQ:PL 1/1:51,14:65:27:237,27,0 chrIV 832054 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.437;DP=142;Dels=0.00;FS=5.364;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.749;QD=21.10;ReadPosRankSum=1.683;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3029,345,0 chrIV 832597 . A G 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.499;QD=22.51;ReadPosRankSum=1.615;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1361,156,0 chrIV 832718 . A C 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.624;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.959;QD=15.01;ReadPosRankSum=0.563;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1264,127,0 chrIV 832844 . T G 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.152;QD=23.10;ReadPosRankSum=2.934;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2505,285,0 chrIV 832970 . C A 2979 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.92;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3012,345,0 chrIV 833173 . G T 4546.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.0540;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.73;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4546,504,0 chrIV 833254 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.237;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.2928;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.914;QD=23.15;ReadPosRankSum=0.438;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:4283,446,0 chrIV 833459 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.60;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3661,417,0 chrIV 833693 . A G 2847 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2880,324,0 chrIV 833772 . G T 2958 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2991,324,0 chrIV 833834 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3106,333,0 chrIV 834320 . T C 5208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=241;Dels=0.00;FS=3.979;HaplotypeScore=22.4182;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.671;QD=21.61;ReadPosRankSum=1.673;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:1,234:240:99:5208,594,0 chrIV 834537 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.328;QD=22.52;ReadPosRankSum=1.709;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3513,399,0 chrIV 834720 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.56;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3654,399,0 chrIV 834790 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.93;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3619,399,0 chrIV 834899 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=22.11;ReadPosRankSum=1.706;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2996,339,0 chrIV 835164 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2885,318,0 chrIV 835319 . T C 5166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.477;QD=22.36;ReadPosRankSum=2.385;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,227:231:99:5166,585,0 chrIV 835444 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.41;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4168,465,0 chrIV 836028 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.5760;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.39;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4201,462,0 chrIV 836051 . C T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.41;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4654,510,0 chrIV 836148 . A G 5501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.780;DP=254;Dels=0.00;FS=18.027;HaplotypeScore=19.1363;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.620;QD=21.66;ReadPosRankSum=3.799;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:5,249:254:99:5501,618,0 chrIV 836436 . T C 4798.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.3623;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.53;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4798,555,0 chrIV 836558 . T G 6605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=18.0257;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.420;QD=24.02;ReadPosRankSum=1.707;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,272:275:99:6605,756,0 chrIV 836588 . C T 6151.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.7738;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.22;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6151,687,0 chrIV 836867 . C T 6027.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6027,663,0 chrIV 837275 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=207;Dels=0.00;FS=6.963;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.080;QD=21.78;ReadPosRankSum=2.400;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,198:207:99:4508,531,0 chrIV 837527 . G A 5384.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.58;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5384,585,0 chrIV 837572 . T A 5759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=264;Dels=0.00;FS=8.964;HaplotypeScore=25.6369;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.116;QD=21.81;ReadPosRankSum=3.428;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:4,259:264:99:5759,639,0 chrIV 837654 . A G 5196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=246;Dels=0.00;FS=3.746;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.363;QD=21.12;ReadPosRankSum=1.704;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,243:246:99:5196,600,0 chrIV 837953 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2413,267,0 chrIV 838114 . T C 47.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=8.00;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:80,9,0 chrIV 838119 . G A 50.97 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=7.28;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:83,9,0 chrIV 838644 . T C 2316 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=15.24;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2349,270,0 chrIV 838650 . A C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=3.263;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.882;QD=16.03;ReadPosRankSum=1.689;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2581,297,0 chrIV 839020 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.56;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3600,405,0 chrIV 839045 . A T 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.386;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.232;QD=20.97;ReadPosRankSum=1.710;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3292,363,0 chrIV 839339 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.83;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2405,264,0 chrIV 839342 . A G 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=127;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.275;QD=18.50;ReadPosRankSum=1.375;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2383,267,0 chrIV 839372 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=17.90;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2127,240,0 chrIV 839558 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.87;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3064,330,0 chrIV 839672 . A T 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=132;Dels=0.00;FS=10.616;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.008;QD=23.79;ReadPosRankSum=2.947;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3173,351,0 chrIV 840230 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.76;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1991,216,0 chrIV 840362 . C T 1027 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1060,120,0 chrIV 840549 . G C 1193 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.85;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1226,138,0 chrIV 840598 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.557;QD=24.39;ReadPosRankSum=1.644;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1960,219,0 chrIV 840697 . T C 4758.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.0245;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.03;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4758,534,0 chrIV 841000 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4393,486,0 chrIV 841276 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.33;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4159,471,0 chrIV 842028 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.27;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3173,357,0 chrIV 842068 . T A 3015 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.10;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3048,333,0 chrIV 842070 . A T 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=2.972;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.490;QD=19.58;ReadPosRankSum=2.321;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3029,336,0 chrIV 842326 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=7.095;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.968;QD=18.92;ReadPosRankSum=2.359;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2076,240,0 chrIV 842335 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=3.579;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=1.033;QD=18.62;ReadPosRankSum=1.671;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2156,243,0 chrIV 842380 . C T 2392 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.26;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2425,270,0 chrIV 842450 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=16.25;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2211,246,0 chrIV 842455 . A G 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=3.238;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=-0.721;QD=15.28;ReadPosRankSum=1.707;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2141,243,0 chrIV 842465 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=15.01;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2059,234,0 chrIV 842538 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=138;Dels=0.00;FS=12.501;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.844;QD=20.60;ReadPosRankSum=3.342;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:4,132:138:99:2876,321,0 chrIV 842636 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=24.27;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2873,312,0 chrIV 842982 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=197;Dels=0.00;FS=3.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.278;QD=21.51;ReadPosRankSum=2.375;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4237,489,0 chrIV 842999 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.03;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3845,438,0 chrIV 843009 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.05;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3569,390,0 chrIV 843125 . G T 3099 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:3132,348,0 chrIV 843483 . A G 738 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:87:771,87,0 chrIV 843581 . T C 735 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=13.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:90:768,90,0 chrIV 843608 . A G 1002 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=14.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1035,123,0 chrIV 843647 . T C 1720 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.588;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.263;QD=21.23;ReadPosRankSum=1.738;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1753,184,0 chrIV 843777 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=22.46;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3110,336,0 chrIV 843832 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=23.23;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3833,420,0 chrIV 843857 . C A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.14;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3425,387,0 chrIV 843869 . T G 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.091;HaplotypeScore=7.0756;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-1.477;QD=20.79;ReadPosRankSum=1.668;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3430,390,0 chrIV 843908 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.71;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2974,327,0 chrIV 844040 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.04;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3745,426,0 chrIV 844050 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=3.384;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-0.978;QD=20.63;ReadPosRankSum=1.712;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3528,402,0 chrIV 844074 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.49;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3319,360,0 chrIV 844178 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.68;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3907,426,0 chrIV 844304 . T A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.54;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4543,492,0 chrIV 845065 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=11.6981;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.89;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2825,306,0 chrIV 845136 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.24;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2502,273,0 chrIV 845227 . G A 2400 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.43;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2433,261,0 chrIV 845309 . T A 1817 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.13;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1850,204,0 chrIV 845391 . G C 2521 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.92;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,110:115:99:2554,291,0 chrIV 845567 . T C 2304 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.39;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2337,261,0 chrIV 845568 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.94;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2266,258,0 chrIV 845613 . G T 1824 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.54;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1857,213,0 chrIV 845628 . T G 1767 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.85;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1800,204,0 chrIV 845777 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.54;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1453,156,0 chrIV 845818 . T G 767 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.17;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:90:800,90,0 chrIV 845875 . A G 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.312;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7613;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.575;QD=24.82;ReadPosRankSum=1.155;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1671,169,0 chrIV 845959 . A C 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=75;Dels=0.00;FS=4.831;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.071;QD=22.29;ReadPosRankSum=1.685;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,72:75:99:1705,195,0 chrIV 846137 . T C 2981 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.04;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3014,339,0 chrIV 846477 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3361,360,0 chrIV 846900 . T G 2324 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.35;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2357,276,0 chrIV 846996 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.44;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2152,240,0 chrIV 847005 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.30;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2138,231,0 chrIV 847053 . A G 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=6.333;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.836;QD=20.22;ReadPosRankSum=2.411;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2621,297,0 chrIV 847395 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.153;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.905;QD=20.57;ReadPosRankSum=1.710;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3242,369,0 chrIV 847524 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=4.106;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.607;QD=22.06;ReadPosRankSum=1.688;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3464,393,0 chrIV 847527 . T G 3403.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.68;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3403,381,0 chrIV 847566 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.26;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3222,360,0 chrIV 847587 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9421;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.27;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2538,282,0 chrIV 847735 . G C 2805 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.41;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2838,315,0 chrIV 847796 . T A 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.588;QD=21.86;ReadPosRankSum=1.636;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3181,360,0 chrIV 848136 . T C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.858;QD=22.74;ReadPosRankSum=1.631;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2375,273,0 chrIV 848397 . T C 1053 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=61.26;MQ0=0;QD=20.65;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1086,117,0 chrIV 848940 . C A 4549.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.52;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4549,504,0 chrIV 848977 . C G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.90;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4052,462,0 chrIV 849204 . T C 3093 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.91;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3126,354,0 chrIV 849395 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=76.5175;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.71;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1698,186,0 chrIV 849478 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.424;HaplotypeScore=15.7193;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.902;QD=23.66;ReadPosRankSum=1.703;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2920,324,0 chrIV 849555 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.71;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,94:99:99:2083,237,0 chrIV 849735 . A G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=101;Dels=0.00;FS=3.235;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.367;QD=21.71;ReadPosRankSum=1.627;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,98:101:99:2226,252,0 chrIV 849796 . T C 1976 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.40;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2009,222,0 chrIV 850164 . A G 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.402;QD=20.55;ReadPosRankSum=1.650;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1800,204,0 chrIV 850484 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.47;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3370,363,0 chrIV 850495 . T C 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=1.293;QD=18.94;ReadPosRankSum=2.401;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2931,339,0 chrIV 850508 . A T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.82;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3270,357,0 chrIV 850697 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.46;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4470,513,0 chrIV 850922 . T C 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.506;HaplotypeScore=5.2554;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.832;QD=20.84;ReadPosRankSum=1.705;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2701,306,0 chrIV 850955 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1702,189,0 chrIV 851004 . T C 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=8.653;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.276;QD=18.56;ReadPosRankSum=1.653;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1703,195,0 chrIV 851043 . T C 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=9.367;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.675;QD=19.98;ReadPosRankSum=1.703;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2471,276,0 chrIV 851114 . T A 513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.701;DP=80;Dels=0.01;FS=15.687;HaplotypeScore=41.2255;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=3.055;QD=6.41;ReadPosRankSum=-5.810;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:40,39:79:60:546,60,0 chrIV 851221 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.29;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2146,243,0 chrIV 851311 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=25.24;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1825,201,0 chrIV 851413 . C T 2737 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.38;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2770,309,0 chrIV 851427 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.39;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2459,264,0 chrIV 851602 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.19;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3774,411,0 chrIV 851792 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.752;QD=22.40;ReadPosRankSum=1.710;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3562,408,0 chrIV 851816 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.12;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3745,411,0 chrIV 851855 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.22;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2455,270,0 chrIV 851875 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.30;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2156,249,0 chrIV 851927 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.27;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2323,255,0 chrIV 852118 . G C 2751 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.55;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2784,318,0 chrIV 852619 . T C 2422 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.35;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2455,273,0 chrIV 852625 . G T 2400 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.00;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2433,276,0 chrIV 852630 . G C 2417 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.34;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2450,282,0 chrIV 852656 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.92;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2861,315,0 chrIV 852794 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.79;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2974,333,0 chrIV 852904 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8493;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.61;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4391,471,0 chrIV 853043 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.5369;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.32;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3816,429,0 chrIV 853136 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.80;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3739,414,0 chrIV 853163 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.21;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4043,447,0 chrIV 853192 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=22.78;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3577,396,0 chrIV 853220 . C A 2815 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=20.11;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2848,318,0 chrIV 853223 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.885;QD=19.40;ReadPosRankSum=1.706;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2672,312,0 chrIV 853271 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.75;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2440,267,0 chrIV 853295 . A G 2628 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.06;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2661,306,0 chrIV 853406 . C A 2733 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.56;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2766,300,0 chrIV 853432 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.01;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2407,267,0 chrIV 853448 . A T 2584 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.28;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2617,279,0 chrIV 853550 . G T 2473 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.88;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2506,270,0 chrIV 853688 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.07;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2940,327,0 chrIV 853808 . C G 2398 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.28;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2431,279,0 chrIV 853958 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2655,315,0 chrIV 854044 . A T 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;MQRankSum=0.198;QD=20.16;ReadPosRankSum=2.389;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1666,183,0 chrIV 854205 . T A 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.117;QD=23.73;ReadPosRankSum=1.700;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2572,279,0 chrIV 854335 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.31;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2586,273,0 chrIV 854367 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.40;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2563,279,0 chrIV 854519 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=3.048;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.281;QD=21.63;ReadPosRankSum=2.345;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2607,288,0 chrIV 854862 . G T 2272 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2305,249,0 chrIV 854953 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.77;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2196,249,0 chrIV 855154 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2911,330,0 chrIV 855322 . G C 3136 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.8547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.08;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3169,363,0 chrIV 855461 . A G 2939 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.61;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2972,339,0 chrIV 855709 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9129;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.15;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3472,381,0 chrIV 855763 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0926;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.90;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3085,351,0 chrIV 856001 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3982,441,0 chrIV 856201 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.05;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4079,462,0 chrIV 856278 . A T 3886.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.99;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3886,420,0 chrIV 856646 . C T 3994.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.09;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3994,438,0 chrIV 856679 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5420;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.075;QD=21.82;ReadPosRankSum=1.692;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3863,438,0 chrIV 857591 . A C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.072;QD=21.69;ReadPosRankSum=0.981;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4099,438,0 chrIV 857609 . C A 4037.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.39;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4037,447,0 chrIV 857621 . G A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.08;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3670,399,0 chrIV 857627 . A C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.6771;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=17.76;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3712,429,0 chrIV 858176 . C G 5356.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.68;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5356,597,0 chrIV 858356 . C T 4872.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.82;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4872,520,0 chrIV 858361 . T C 4561.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.5939;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.58;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4561,522,0 chrIV 858862 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.79;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2670,300,0 chrIV 859191 . T G 3820.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.10;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3820,435,0 chrIV 859510 . A G 4871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=237;Dels=0.00;FS=8.195;HaplotypeScore=16.3793;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.188;QD=20.55;ReadPosRankSum=3.416;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:4,233:237:99:4871,570,0 chrIV 859708 . G A 4876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=215;Dels=0.00;FS=3.859;HaplotypeScore=14.4243;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.327;QD=22.68;ReadPosRankSum=-0.227;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4876,513,0 chrIV 859980 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.142;QD=22.06;ReadPosRankSum=1.653;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3927,453,0 chrIV 860035 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.17;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4190,462,0 chrIV 860287 . A G 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=219;Dels=0.00;FS=14.241;HaplotypeScore=13.4688;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.456;QD=22.84;ReadPosRankSum=3.355;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:4,212:219:99:5001,576,0 chrIV 860602 . G A 5556.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.13;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5556,627,0 chrIV 860620 . C T 5528.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.59;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5528,618,0 chrIV 860671 . A G 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=218;Dels=0.00;FS=8.963;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.614;QD=19.85;ReadPosRankSum=2.427;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4328,510,0 chrIV 860689 . C T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.93;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:4815,531,0 chrIV 860755 . C T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.36;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4581,501,0 chrIV 860764 . T C 4616.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.42;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4616,534,0 chrIV 860927 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.425;QD=23.02;ReadPosRankSum=1.688;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3637,405,0 chrIV 861257 . A G 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=172;Dels=0.00;FS=6.627;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.731;QD=22.51;ReadPosRankSum=2.421;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3871,432,0 chrIV 861707 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.59;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2066,228,0 chrIV 861727 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.85;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2043,231,0 chrIV 862580 . T G 2185 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.01;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2218,252,0 chrIV 862602 . T C 2351 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.75;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2384,270,0 chrIV 862854 . T C 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=73;Dels=0.00;FS=2.971;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.997;QD=22.52;ReadPosRankSum=2.349;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1677,189,0 chrIV 862992 . C G 2839 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2872,330,0 chrIV 863028 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2679,288,0 chrIV 863455 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.39;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3508,393,0 chrIV 863664 . T C 2688 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.50;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2721,312,0 chrIV 863685 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.06;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2939,315,0 chrIV 863843 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.16;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3126,339,0 chrIV 864225 . G A 5907.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=19.0249;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5907,642,0 chrIV 864279 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.356;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.546;QD=21.13;ReadPosRankSum=0.640;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3887,438,0 chrIV 864550 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.17;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3620,417,0 chrIV 864668 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=21.88;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3742,405,0 chrIV 864669 . G T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=20.89;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3551,396,0 chrIV 864686 . A G 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-2.076;QD=20.54;ReadPosRankSum=2.414;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2867,327,0 chrIV 864727 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.01;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1426,165,0 chrIV 865057 . C T 2267 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=12.7742;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=19.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2300,252,0 chrIV 865291 . C T 4775.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.76;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4775,528,0 chrIV 865399 . A G 4543.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.49;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4543,525,0 chrIV 865489 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.36;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3603,414,0 chrIV 865525 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=189;Dels=0.00;FS=15.429;HaplotypeScore=10.5195;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.959;QD=18.10;ReadPosRankSum=3.261;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:4,182:189:99:3421,387,0 chrIV 865546 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=3.702;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.679;QD=18.93;ReadPosRankSum=1.591;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3730,420,0 chrIV 865573 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.410;DP=210;Dels=0.00;FS=14.888;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.262;QD=19.72;ReadPosRankSum=3.385;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:4,206:210:99:4142,474,0 chrIV 865639 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.209;DP=213;Dels=0.00;FS=2.381;HaplotypeScore=17.4708;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-0.692;QD=21.00;ReadPosRankSum=1.517;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4474,497,0 chrIV 865855 . C T 5652.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.65;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5652,639,0 chrIV 866041 . A G 5997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.090;DP=288;Dels=0.00;FS=6.151;HaplotypeScore=18.3131;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.658;QD=20.82;ReadPosRankSum=2.324;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:6,281:288:99:5997,646,0 chrIV 866146 . A G 5579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=251;Dels=0.00;FS=3.280;HaplotypeScore=17.0171;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.925;QD=22.23;ReadPosRankSum=1.663;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:1,248:251:99:5579,648,0 chrIV 866195 . T G 5979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=262;Dels=0.00;FS=3.448;HaplotypeScore=15.5300;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.431;QD=22.82;ReadPosRankSum=1.652;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:5979,675,0 chrIV 866368 . G C 4810.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.0254;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.30;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,231:237:99:4810,555,0 chrIV 866436 . T C 5443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.604;DP=249;Dels=0.00;FS=7.961;HaplotypeScore=21.1828;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.371;QD=21.86;ReadPosRankSum=3.823;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:5,244:249:99:5443,618,0 chrIV 866742 . T G 5135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.898;QD=20.79;ReadPosRankSum=1.661;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:5135,585,0 chrIV 866998 . T C 6444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=273;Dels=0.00;FS=2.675;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.173;QD=23.60;ReadPosRankSum=2.423;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:6444,744,0 chrIV 867508 . C T 7152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.706;QD=23.45;ReadPosRankSum=1.333;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:1,303:305:99:7152,792,0 chrIV 868348 . G T 4627.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.46;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4627,507,0 chrIV 868578 . G A 4994.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.67;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4994,564,0 chrIV 868704 . A G 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.734;DP=200;Dels=0.00;FS=9.772;HaplotypeScore=15.8520;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.774;QD=22.80;ReadPosRankSum=2.965;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4559,522,0 chrIV 869203 . C A 206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=-1.378;QD=1.60;ReadPosRankSum=1.350;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:27:239,27,0 chrIV 869984 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.50;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2828,309,0 chrIV 869992 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.32;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2868,312,0 chrIV 870200 . G C 3196 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3734;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.17;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3229,375,0 chrIV 870699 . A T 1190 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6776;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.88;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1223,135,0 chrIV 870727 . A C 2063 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.46;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,101:106:99:2096,246,0 chrIV 870749 . T C 2944 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=23.00;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2977,345,0 chrIV 870917 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.37;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2725,318,0 chrIV 871373 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.89;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2879,321,0 chrIV 871412 . G T 1669 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1702,192,0 chrIV 871483 . G T 1356 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.52;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1389,150,0 chrIV 871540 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.77;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1731,189,0 chrIV 871554 . G C 1471 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.96;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1504,171,0 chrIV 871619 . A G 228 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=15.20;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:30:261,30,0 chrIV 871635 . A G 67.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.88;SB=-4.775e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:100,12,0 chrIV 871688 . C T 45.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=11.49;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:78,9,0 chrIV 871775 . T C 232.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=0;MQRankSum=-0.935;QD=17.90;ReadPosRankSum=1.203;SB=-5.145e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:11:265,11,0 chrIV 871786 . C T 213.12 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.01;MQ0=0;MQRankSum=0.290;QD=17.76;ReadPosRankSum=0.290;SB=-5.359e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:5:244,5,0 chrIV 871796 . C T 219.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.39;MQ0=0;QD=21.90;SB=-5.299e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:252,27,0 chrIV 871806 . G A 153.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=17.01;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:186,21,0 chrIV 871816 . G A 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=5.7808;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=1;MQRankSum=0.731;QD=7.33;ReadPosRankSum=-0.731;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:9:76,9,0 chrIV 871831 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.02;MQ0=3;MQRankSum=1.026;QD=2.27;ReadPosRankSum=1.026;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:3,4:7:6:47,6,0 chrIV 877825 . G A 59.51 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=0;QD=2.98;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:92,12,0 chrIV 877826 . A T 69.51 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=0;QD=3.48;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:102,12,0 chrIV 877864 . G A 370.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.377;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;MQRankSum=-2.404;QD=6.86;ReadPosRankSum=-0.397;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:2,52:54:8:402,8,0 chrIV 877950 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.811;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.3151;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=1;MQRankSum=3.106;QD=14.92;ReadPosRankSum=-0.591;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:9,94:104:50:1585,50,0 chrIV 878048 . A T 2046 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=0;QD=22.99;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2079,225,0 chrIV 878181 . T A 1208 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=18.58;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1241,138,0 chrIV 878186 . A T 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=-0.185;QD=18.97;ReadPosRankSum=2.286;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1171,129,0 chrIV 878246 . C A 845 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=21.67;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:96:878,96,0 chrIV 878261 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=21.91;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:997,108,0 chrIV 878287 . A T 767 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=19.17;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:96:800,96,0 chrIV 879123 . C T 87.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.734;DP=246;Dels=0.00;FS=3.834;HaplotypeScore=96.8433;MLEAC=2;MLEAF=1.00;MQ=15.47;MQ0=79;MQRankSum=6.535;QD=0.35;ReadPosRankSum=-0.423;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:180,47:246:15:120,15,0 chrIV 880235 . G T 275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.033;DP=533;Dels=0.00;FS=53.657;HaplotypeScore=27.9222;MLEAC=1;MLEAF=0.500;MQ=16.10;MQ0=18;MQRankSum=3.009;QD=0.52;ReadPosRankSum=-0.352;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:461,70:533:99:305,0,107 chrIV 880457 . T C 90.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.192;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.1095;MLEAC=2;MLEAF=1.00;MQ=8.39;MQ0=53;MQRankSum=4.135;QD=0.44;ReadPosRankSum=-0.869;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:180,18:203:15:123,15,0 chrIV 880465 . T G 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.111;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=8.20;MQ0=41;MQRankSum=3.388;QD=0.29;ReadPosRankSum=-0.680;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:160,4:168:9:80,9,0 chrIV 880474 . G A 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=8.49;MQ0=33;MQRankSum=1.500;QD=0.35;ReadPosRankSum=-2.964;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:130,6:136:9:80,9,0 chrIV 884320 . C T 294 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=14.00;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:36:327,36,0 chrIV 884337 . G T 325 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;QD=11.61;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:39:358,39,0 chrIV 884339 . T A 309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;MQRankSum=-0.291;QD=10.30;ReadPosRankSum=2.286;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,28:30:39:342,39,0 chrIV 884517 . G A 589 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=13.70;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:69:622,69,0 chrIV 884597 . G A 524 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=1;QD=9.19;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:57:63:557,63,0 chrIV 884761 . T A 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.848;QD=24.19;ReadPosRankSum=2.402;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2525,276,0 chrIV 884980 . A T 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.583;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.497;QD=23.79;ReadPosRankSum=1.668;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3854,432,0 chrIV 885020 . T C 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=168;Dels=0.00;FS=5.949;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.910;QD=22.11;ReadPosRankSum=2.898;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3715,423,0 chrIV 885320 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4284,486,0 chrIV 885407 . G A 4965.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.31;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4965,540,0 chrIV 885455 . T A 5200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=227;Dels=0.00;FS=5.666;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.624;QD=22.91;ReadPosRankSum=2.934;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:5200,579,0 chrIV 885734 . C T 6197.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.5003;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.30;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6197,681,0 chrIV 885908 . A G 4657.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.07;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4657,546,0 chrIV 886289 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=192;Dels=0.00;FS=11.434;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.047;QD=21.56;ReadPosRankSum=2.942;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:4139,462,0 chrIV 887044 . A G 631 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.03;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:81:664,81,0 chrIV 887150 . G C 958 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:99:991,114,0 chrIV 887179 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.23;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1450,156,0 chrIV 887504 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4166,465,0 chrIV 887591 . T C 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.196;DP=192;Dels=0.00;FS=8.939;HaplotypeScore=15.0075;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.496;QD=22.07;ReadPosRankSum=2.832;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:4237,474,0 chrIV 888050 . C T 7404.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=18.3040;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.58;SB=-3.729e+03 GT:AD:DP:GQ:PL 1/1:0,311:314:99:7404,802,0 chrIV 888150 . T C 6669.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=13.3620;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.23;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6669,762,0 chrIV 888227 . T C 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=214;Dels=0.00;FS=13.600;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.723;QD=21.18;ReadPosRankSum=2.958;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4533,516,0 chrIV 888233 . C T 4592.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.46;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4592,513,0 chrIV 888293 . T C 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=222;Dels=0.00;FS=12.900;HaplotypeScore=22.0131;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.014;QD=21.19;ReadPosRankSum=2.950;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:3,216:222:99:4705,531,0 chrIV 888461 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.73;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4318,483,0 chrIV 888488 . C T 4415.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.86;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4415,480,0 chrIV 888611 . A G 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.4423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.400;QD=22.36;ReadPosRankSum=1.716;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4896,564,0 chrIV 888734 . C T 4637.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.7197;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.66;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4637,501,0 chrIV 889122 . T C 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.428;QD=24.86;ReadPosRankSum=1.694;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2295,255,0 chrIV 889358 . C T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3566,390,0 chrIV 889568 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=5.569;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.670;QD=20.96;ReadPosRankSum=1.707;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,136:141:99:2989,348,0 chrIV 889650 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3065,336,0 chrIV 889739 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9882;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.64;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3224,354,0 chrIV 890044 . G A 5988.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.85;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5988,663,0 chrIV 890069 . T C 5114.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.21;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5114,573,0 chrIV 890071 . T C 5147.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.87;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5147,594,0 chrIV 890096 . A T 4710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.6000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.031;QD=19.07;ReadPosRankSum=1.704;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:4710,504,0 chrIV 890129 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.425;DP=246;Dels=0.00;FS=4.886;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.015;QD=18.46;ReadPosRankSum=3.389;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:4,239:246:99:4540,522,0 chrIV 890195 . A G 5178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.726;DP=235;Dels=0.00;FS=7.522;HaplotypeScore=18.4552;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.514;QD=22.03;ReadPosRankSum=3.760;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:5,229:235:99:5178,585,0 chrIV 890417 . C A 5969.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.62;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5969,637,0 chrIV 890461 . C G 5147.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.48;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,224:229:99:5147,600,0 chrIV 890830 . C T 9070.01 filter AC=2;AF=1.00;AN=2;DP=411;Dels=0.00;FS=0.000;HaplotypeScore=29.4096;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.07;SB=-4.259e+03 GT:AD:DP:GQ:PL 1/1:0,404:411:99:9070,1026,0 chrIV 891174 . A G 5204.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.7024;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5204,591,0 chrIV 891242 . G A 5423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.2722;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.520;QD=22.23;ReadPosRankSum=-0.677;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5423,612,0 chrIV 891541 . A G 5739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=253;Dels=0.00;FS=2.998;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.810;QD=22.68;ReadPosRankSum=2.401;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:5739,660,0 chrIV 891685 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.48;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3957,423,0 chrIV 891889 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.5857;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.58;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4292,495,0 chrIV 892632 . G A 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.181;QD=19.34;ReadPosRankSum=-0.630;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,43:44:99:884,99,0 chrIV 892662 . G C 682 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.06;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:81:715,81,0 chrIV 892729 . T C 102.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=55.16;MQ0=3;MQRankSum=0.935;QD=3.29;ReadPosRankSum=1.131;SB=-2.702e+01 GT:AD:DP:GQ:PL 0/1:12,19:31:22:132,0,22 chrIV 892736 . G A 625 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:78:658,78,0 chrIV 892764 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.85;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1221,138,0 chrIV 892825 . T A 2581 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2614,285,0 chrIV 892859 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.41;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,111:116:99:2980,321,0 chrIV 892982 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.57;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4508,528,0 chrIV 893039 . A G 4934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.767;DP=219;Dels=0.00;FS=3.151;HaplotypeScore=12.0416;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.194;QD=22.53;ReadPosRankSum=0.973;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4934,564,0 chrIV 893123 . C A 5050.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.45;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5050,555,0 chrIV 893137 . C T 4924.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.01;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:4924,564,0 chrIV 893390 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.13;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3430,393,0 chrIV 893441 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=196;Dels=0.00;FS=2.955;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.044;QD=17.82;ReadPosRankSum=2.323;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:3493,399,0 chrIV 893442 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=2.942;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.791;QD=18.16;ReadPosRankSum=2.260;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3541,393,0 chrIV 893751 . C G 4652.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.34;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,214:218:99:4652,546,0 chrIV 893888 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.40;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3786,429,0 chrIV 893934 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=3.347;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.198;QD=20.99;ReadPosRankSum=1.698;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4219,477,0 chrIV 893952 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=203;Dels=0.00;FS=9.139;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.842;QD=21.24;ReadPosRankSum=3.279;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:4,198:203:99:4312,486,0 chrIV 893982 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=188;Dels=0.00;FS=10.741;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=1.144;QD=20.02;ReadPosRankSum=2.963;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:3764,432,0 chrIV 894075 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.71;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4329,483,0 chrIV 895202 . T A 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.849;QD=24.52;ReadPosRankSum=1.596;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2534,279,0 chrIV 895289 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.05;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3007,327,0 chrIV 895397 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.60;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3057,342,0 chrIV 895577 . A T 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.108;QD=24.86;ReadPosRankSum=-0.195;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3978,438,0 chrIV 895607 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.62;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4433,507,0 chrIV 896024 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=6.752;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-2.295;QD=20.45;ReadPosRankSum=2.381;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2957,342,0 chrIV 896285 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.90;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3079,345,0 chrIV 896319 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.94;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3174,345,0 chrIV 896324 . T C 2985 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.03;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3018,345,0 chrIV 896456 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0679;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.59;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3218,342,0 chrIV 896532 . C A 3118 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.79;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3151,345,0 chrIV 896725 . C A 3942.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3942,426,0 chrIV 896774 . T G 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=182;Dels=0.00;FS=3.576;HaplotypeScore=14.4658;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.404;QD=21.14;ReadPosRankSum=1.713;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3848,438,0 chrIV 897251 . A G 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=3.238;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.548;QD=22.15;ReadPosRankSum=1.714;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4364,480,0 chrIV 897260 . A G 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=199;Dels=0.00;FS=9.780;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-1.188;QD=20.80;ReadPosRankSum=2.965;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4140,471,0 chrIV 897287 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.26;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4167,447,0 chrIV 897316 . A T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.78;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3574,390,0 chrIV 897434 . A T 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.104;QD=21.95;ReadPosRankSum=1.694;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3995,453,0 chrIV 897605 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2932,321,0 chrIV 897893 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=3.039;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.700;QD=24.03;ReadPosRankSum=1.709;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3628,405,0 chrIV 898087 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2441,285,0 chrIV 898376 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.59;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2202,237,0 chrIV 898379 . T C 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.577;QD=20.12;ReadPosRankSum=1.696;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1965,228,0 chrIV 898406 . T G 2132 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3232;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.90;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2165,246,0 chrIV 898456 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.28;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2194,240,0 chrIV 898625 . C G 3187 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.76;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3220,381,0 chrIV 898763 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=3.353;HaplotypeScore=11.0247;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.833;QD=19.61;ReadPosRankSum=1.666;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3170,366,0 chrIV 898787 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=169;Dels=0.00;FS=9.143;HaplotypeScore=7.4189;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.351;QD=20.40;ReadPosRankSum=3.344;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:4,163:169:99:3447,390,0 chrIV 898970 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.3308;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.35;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4624,504,0 chrIV 899129 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;QD=23.80;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3879,420,0 chrIV 899165 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=174;Dels=0.00;FS=2.796;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.547;QD=21.24;ReadPosRankSum=2.421;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3695,420,0 chrIV 899304 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.52;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2961,321,0 chrIV 899764 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.77;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3891,432,0 chrIV 900294 . C T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4644,501,0 chrIV 900493 . C A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=16.6108;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.99;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3607,408,0 chrIV 901107 . T A 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=219;Dels=0.00;FS=13.762;HaplotypeScore=12.8122;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.068;QD=21.56;ReadPosRankSum=3.285;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:4,215:219:99:4721,510,0 chrIV 901210 . A G 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=3.420;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.549;QD=21.90;ReadPosRankSum=1.695;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4161,471,0 chrIV 901288 . C G 3761.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.55;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3761,435,0 chrIV 901342 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3959,429,0 chrIV 901599 . T G 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=168;Dels=0.00;FS=5.715;HaplotypeScore=18.7044;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.187;QD=20.57;ReadPosRankSum=2.946;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3455,387,0 chrIV 901721 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=3.821;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.387;QD=20.31;ReadPosRankSum=1.677;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3838,432,0 chrIV 901798 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.124;DP=187;Dels=0.00;FS=8.783;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.388;QD=21.16;ReadPosRankSum=3.376;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:3956,453,0 chrIV 902051 . G T 2700 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.13;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2733,294,0 chrIV 902065 . A C 2533 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.26;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2566,291,0 chrIV 902156 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.14;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3244,372,0 chrIV 902200 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.591;DP=152;Dels=0.00;FS=5.325;HaplotypeScore=16.8618;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.470;QD=21.87;ReadPosRankSum=2.926;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,147:152:99:3324,387,0 chrIV 902257 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.88;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3364,369,0 chrIV 902350 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.89;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4204,453,0 chrIV 902361 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.6557;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.621;QD=22.03;ReadPosRankSum=1.658;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4119,462,0 chrIV 902673 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.65;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3234,354,0 chrIV 902682 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=166;Dels=0.00;FS=5.263;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-1.107;QD=19.40;ReadPosRankSum=3.406;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:4,161:166:99:3254,375,0 chrIV 902688 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.14;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3509,390,0 chrIV 902746 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.26;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3526,411,0 chrIV 903517 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=6.546;HaplotypeScore=12.2109;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.052;QD=20.35;ReadPosRankSum=1.644;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3248,363,0 chrIV 903611 . C G 2247 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.54;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2280,261,0 chrIV 903866 . T G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.524;QD=23.72;ReadPosRankSum=1.669;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2618,300,0 chrIV 903976 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=3.349;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.758;QD=21.46;ReadPosRankSum=1.710;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3455,396,0 chrIV 904214 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.751;QD=21.83;ReadPosRankSum=1.669;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3646,411,0 chrIV 904871 . C T 5310.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.29;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5310,585,0 chrIV 905063 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.728;DP=162;Dels=0.00;FS=4.759;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.746;QD=21.47;ReadPosRankSum=3.796;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:5,157:162:99:3478,396,0 chrIV 905128 . A T 2126 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8310;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.84;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2159,231,0 chrIV 905304 . G T 599 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.64;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:69:632,69,0 chrIV 906063 . T C 2898 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.79;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2931,327,0 chrIV 906101 . A G 2604 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.88;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2637,306,0 chrIV 906124 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.43;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3265,357,0 chrIV 906261 . G T 2976 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3009,336,0 chrIV 906313 . C A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.59;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4069,450,0 chrIV 907098 . A T 2442 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=24.18;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2475,267,0 chrIV 907102 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.71;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2531,273,0 chrIV 907227 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.13;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3364,384,0 chrIV 907286 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6644;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.12;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4162,474,0 chrIV 907500 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.7868;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.12;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3420,381,0 chrIV 907514 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.18;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3121,342,0 chrIV 907611 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.398;QD=19.06;ReadPosRankSum=1.709;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2854,321,0 chrIV 907616 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.99;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2678,294,0 chrIV 907779 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.20;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2344,264,0 chrIV 907782 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.68;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2328,258,0 chrIV 907830 . T G 2716 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.40;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2749,309,0 chrIV 907845 . A T 2972 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.95;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3005,330,0 chrIV 908202 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=3.193;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.091;QD=22.97;ReadPosRankSum=1.708;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3376,381,0 chrIV 908284 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.46;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2994,339,0 chrIV 908478 . T C 4704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=199;Dels=0.00;FS=5.174;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.067;QD=23.64;ReadPosRankSum=3.389;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:4,192:199:99:4704,531,0 chrIV 908567 . C T 4043.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.97;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4043,438,0 chrIV 908590 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=6.046;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=-0.736;QD=18.75;ReadPosRankSum=2.421;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3258,369,0 chrIV 908594 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=19.06;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3279,366,0 chrIV 908649 . A G 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.748;QD=17.76;ReadPosRankSum=1.673;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3159,363,0 chrIV 908658 . T G 3437.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=18.68;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3437,396,0 chrIV 908760 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.185;QD=22.70;ReadPosRankSum=1.709;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3405,384,0 chrIV 908781 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.80;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3534,384,0 chrIV 908872 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.01;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3830,432,0 chrIV 908962 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.20;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3596,387,0 chrIV 908967 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.46;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3703,399,0 chrIV 909447 . T A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.5460;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.33;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3946,426,0 chrIV 909908 . C A 2989 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.50;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3022,327,0 chrIV 910427 . A T 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=136;Dels=0.00;FS=2.907;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.208;QD=23.04;ReadPosRankSum=2.413;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3167,345,0 chrIV 910688 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4106;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.95;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2206,252,0 chrIV 910761 . T C 2182 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.82;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2215,252,0 chrIV 910905 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.89;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3512,375,0 chrIV 910968 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.97;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3770,417,0 chrIV 911274 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.226;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=0.396;QD=19.16;ReadPosRankSum=1.705;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2486,282,0 chrIV 911326 . G A 1895 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=14.14;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1928,216,0 chrIV 911330 . T C 1891 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=14.55;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1924,219,0 chrIV 911333 . G A 1954 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1836;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=14.16;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:1987,216,0 chrIV 911343 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8668;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=13.30;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2015,219,0 chrIV 911472 . A C 2610 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.48;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2643,303,0 chrIV 911813 . T A 3052 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.48;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3085,339,0 chrIV 911858 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.80;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2461,264,0 chrIV 911925 . G T 2172 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.09;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2205,243,0 chrIV 912189 . T C 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=4.771;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.697;QD=13.70;ReadPosRankSum=1.692;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1225,135,0 chrIV 912233 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=14.46;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1479,171,0 chrIV 912340 . A C 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=88;Dels=0.01;FS=2.748;HaplotypeScore=11.9307;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.217;QD=18.11;ReadPosRankSum=2.334;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:2,83:87:99:1627,192,0 chrIV 912471 . A C 2642 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.80;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2675,309,0 chrIV 912509 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=25.16;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2826,312,0 chrIV 912557 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.791;QD=23.39;ReadPosRankSum=1.689;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3789,432,0 chrIV 912608 . T C 4720.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.1785;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.65;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4720,546,0 chrIV 912700 . A C 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.018;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=22.3071;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.357;QD=20.53;ReadPosRankSum=1.214;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3982,436,0 chrIV 912778 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=201;Dels=0.00;FS=6.053;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.623;QD=19.24;ReadPosRankSum=2.965;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:3868,450,0 chrIV 912782 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.9884;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.43;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4148,471,0 chrIV 912838 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.8610;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.72;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3628,399,0 chrIV 912884 . T C 4823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=233;Dels=0.00;FS=2.681;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-2.091;QD=20.70;ReadPosRankSum=2.418;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4823,549,0 chrIV 912902 . C T 5155.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=4.1658;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.30;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5155,555,0 chrIV 912983 . C T 6460.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.19;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6460,705,0 chrIV 913034 . A G 5355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=3.108;HaplotypeScore=9.7090;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.731;QD=23.49;ReadPosRankSum=1.686;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:1,224:228:99:5355,624,0 chrIV 913112 . T G 5817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.157;QD=22.29;ReadPosRankSum=1.344;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:5817,663,0 chrIV 913332 . A G 4930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=218;Dels=0.00;FS=11.181;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.419;QD=22.61;ReadPosRankSum=2.903;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:4930,570,0 chrIV 913494 . G A 5258.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.58;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5258,576,0 chrIV 913596 . T G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3758,417,0 chrIV 913698 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.80;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1614,177,0 chrIV 913702 . G T 1531 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.88;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1564,174,0 chrIV 913736 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.79;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1814,210,0 chrIV 913863 . T C 886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.953;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.213;QD=21.61;ReadPosRankSum=1.126;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,39:41:99:919,105,0 chrIV 913903 . G A 855 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=19.43;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:888,102,0 chrIV 913904 . A G 834 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=18.95;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:867,102,0 chrIV 913905 . A T 867 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=20.16;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:900,102,0 chrIV 913963 . G A 640 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=15.61;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:673,72,0 chrIV 913973 . G C 529 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.56;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:63:562,63,0 chrIV 914065 . C T 621 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.00;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,26:27:69:654,69,0 chrIV 914455 . C G 1940 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1973,222,0 chrIV 914545 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.912;QD=23.73;ReadPosRankSum=1.712;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4010,468,0 chrIV 914816 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.32;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2912,333,0 chrIV 914902 . A G 2772 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.5401;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.53;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2805,327,0 chrIV 915347 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.57;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1748,189,0 chrIV 915378 . A T 1379 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.58;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1412,159,0 chrIV 915388 . T A 1671 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.58;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1704,183,0 chrIV 915430 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.88;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2205,246,0 chrIV 915507 . A C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=5.027;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.280;QD=23.50;ReadPosRankSum=1.699;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2500,285,0 chrIV 916020 . C T 652 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,33:35:75:685,75,0 chrIV 917310 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.34;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1666,180,0 chrIV 917577 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=153;Dels=0.00;FS=16.186;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.009;QD=21.71;ReadPosRankSum=3.389;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:4,146:153:99:3322,375,0 chrIV 917683 . A G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=123;Dels=0.00;FS=6.651;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.313;QD=22.52;ReadPosRankSum=2.409;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2803,321,0 chrIV 917833 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.9140;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.48;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:2994,339,0 chrIV 918196 . A C 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=168;Dels=0.00;FS=3.001;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.493;QD=21.92;ReadPosRankSum=2.361;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3683,423,0 chrIV 918363 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.1338;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.04;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3709,429,0 chrIV 918408 . C A 3200 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=17.3013;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.13;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3233,351,0 chrIV 918495 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.7623;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.15;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3304,375,0 chrIV 918501 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.87;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3146,351,0 chrIV 918606 . G T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.41;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3809,411,0 chrIV 918674 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=176;Dels=0.00;FS=2.954;HaplotypeScore=8.3117;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.147;QD=23.16;ReadPosRankSum=2.422;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4077,468,0 chrIV 918776 . G C 3227.04 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.80;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3260,366,0 chrIV 918797 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=173;Dels=0.00;FS=10.670;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-2.109;QD=19.58;ReadPosRankSum=2.379;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3387,384,0 chrIV 918920 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.60;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3413,369,0 chrIV 919006 . A G 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.00;FS=4.668;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.736;QD=24.17;ReadPosRankSum=1.670;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:4085,456,0 chrIV 919261 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.57;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2871,315,0 chrIV 919268 . A T 2878 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.01;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2911,309,0 chrIV 919279 . A T 2855 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.69;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2888,318,0 chrIV 919709 . T A 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=190;Dels=0.00;FS=6.419;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.627;QD=24.22;ReadPosRankSum=2.398;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4601,501,0 chrIV 919827 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.58;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3496,393,0 chrIV 919860 . A T 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=172;Dels=0.00;FS=6.201;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.424;QD=22.80;ReadPosRankSum=2.349;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3921,435,0 chrIV 920392 . T A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.79;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4513,495,0 chrIV 920565 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4204,468,0 chrIV 920628 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3393,372,0 chrIV 921045 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=23.34;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3874,429,0 chrIV 921076 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.82;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4085,471,0 chrIV 921130 . G A 4883.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.70;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4883,534,0 chrIV 921181 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=192;Dels=0.00;FS=6.607;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.441;QD=19.34;ReadPosRankSum=2.386;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3714,408,0 chrIV 921281 . T C 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=240;Dels=0.00;FS=6.878;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.159;QD=19.47;ReadPosRankSum=2.388;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:4672,531,0 chrIV 921620 . A T 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.747;QD=23.06;ReadPosRankSum=1.698;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2408,264,0 chrIV 921681 . G A 794 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.06;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:827,87,0 chrIV 921790 . A T 1196 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.36;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1229,135,0 chrIV 921796 . T A 1144 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.07;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1177,129,0 chrIV 921824 . A G 65.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.261;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=0;MQRankSum=0.251;QD=1.64;ReadPosRankSum=-4.973;SB=-1.352e+01 GT:AD:DP:GQ:PL 0/1:28,12:40:6:95,0,6 chrIV 922016 . C G 1479 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.07;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1512,174,0 chrIV 922174 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3850,417,0 chrIV 922223 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3782,417,0 chrIV 922382 . T C 3949.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.23;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3949,444,0 chrIV 922757 . A G 2538 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2571,297,0 chrIV 922835 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9697;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.94;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1980,222,0 chrIV 922979 . T G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;MQRankSum=-1.698;QD=24.40;ReadPosRankSum=1.698;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4928,564,0 chrIV 923081 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=2.920;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.418;QD=16.53;ReadPosRankSum=2.415;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2414,273,0 chrIV 923093 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.07;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2627,297,0 chrIV 923102 . C T 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.201;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.562;QD=17.72;ReadPosRankSum=0.053;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2921,318,0 chrIV 923384 . G T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.96;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3498,390,0 chrIV 923423 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.66;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3376,381,0 chrIV 923675 . A G 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.300;QD=22.60;ReadPosRankSum=1.715;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4701,537,0 chrIV 923784 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.272;QD=22.12;ReadPosRankSum=1.708;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3219,369,0 chrIV 923952 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=15.4723;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=22.03;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2941,339,0 chrIV 924083 . T A 1884 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=21.6472;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.84;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1917,210,0 chrIV 924094 . A G 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=3.365;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-1.053;QD=16.53;ReadPosRankSum=1.630;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1719,198,0 chrIV 924110 . C T 2139 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.39;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2172,234,0 chrIV 924351 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.98;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3769,426,0 chrIV 924464 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=157;Dels=0.00;FS=2.974;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.227;QD=21.96;ReadPosRankSum=2.403;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3448,396,0 chrIV 924561 . C T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8096;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.52;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:4389,466,0 chrIV 924619 . G T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.56;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3451,378,0 chrIV 924667 . T C 3149 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.57;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,141:146:99:3182,357,0 chrIV 924698 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.63;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3592,387,0 chrIV 924961 . A T 4983.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.84;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4983,555,0 chrIV 925130 . C T 5075.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.50;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5075,549,0 chrIV 925318 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.12;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3861,435,0 chrIV 925618 . G C 4793.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.09;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4793,561,0 chrIV 925675 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3505;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.99;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4139,462,0 chrIV 925876 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.3091;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.92;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4434,501,0 chrIV 925956 . G A 5479.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.9397;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.62;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5479,589,0 chrIV 926065 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.88;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3657,423,0 chrIV 926246 . A G 2194 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.39;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2227,252,0 chrIV 926263 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.64;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2370,255,0 chrIV 926285 . C G 2300 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5779;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.70;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2333,267,0 chrIV 926551 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.57;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2470,273,0 chrIV 926695 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.6743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2459,282,0 chrIV 926737 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3810,414,0 chrIV 927283 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.47;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2609,282,0 chrIV 927608 . C A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=18.2884;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=15.06;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:3299,357,0 chrIV 927826 . A T 6628.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.9797;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.64;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6628,726,0 chrIV 928114 . A T 5022.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5022,570,0 chrIV 928279 . T C 5496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=254;Dels=0.00;FS=2.569;HaplotypeScore=20.7926;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.877;QD=21.64;ReadPosRankSum=2.949;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:3,251:254:99:5496,633,0 chrIV 928579 . C G 386.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;DP=256;Dels=0.00;FS=444.194;HaplotypeScore=22.9404;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-3.371;QD=1.51;ReadPosRankSum=-9.763;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:186,62:256:99:416,0,2796 chrIV 928753 . T C 5928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=284;Dels=0.00;FS=2.708;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.989;QD=20.87;ReadPosRankSum=2.415;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:2,282:284:99:5928,690,0 chrIV 928756 . C T 5931.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.57;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:5931,657,0 chrIV 928774 . T C 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=267;Dels=0.00;FS=2.790;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.850;QD=20.04;ReadPosRankSum=2.376;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:2,265:267:99:5351,597,0 chrIV 928988 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.8581;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.50;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,158:163:99:3342,372,0 chrIV 929241 . T C 403 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:51:436,51,0 chrIV 929293 . T C 1022 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1055,120,0 chrIV 929368 . G A 846 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:96:879,96,0 chrIV 929658 . A T 2533 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.43;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2566,288,0 chrIV 929665 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.87;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2696,303,0 chrIV 930059 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=4.602;HaplotypeScore=9.3811;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.201;QD=20.78;ReadPosRankSum=1.712;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3678,432,0 chrIV 930077 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.87;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3980,432,0 chrIV 930409 . A G 1225 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.08;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1258,141,0 chrIV 930421 . A G 1243 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.72;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1276,147,0 chrIV 930989 . C G 1068 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;QD=10.57;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1101,129,0 chrIV 931013 . G C 1843 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=14.63;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1876,213,0 chrIV 931142 . C A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=20.74;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4148,444,0 chrIV 931147 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.780;QD=19.87;ReadPosRankSum=2.425;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3973,453,0 chrIV 931180 . T C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.5841;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=18.97;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3738,423,0 chrIV 931376 . C A 4619.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.87;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4619,498,0 chrIV 931988 . C T 5042.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=18.3435;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.67;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5042,552,0 chrIV 932298 . C T 5823.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.9490;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.36;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5823,645,0 chrIV 932509 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=214;Dels=0.00;FS=2.755;HaplotypeScore=16.2532;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.620;QD=18.48;ReadPosRankSum=2.426;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:3955,450,0 chrIV 932535 . A C 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.1622;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.840;QD=17.29;ReadPosRankSum=1.645;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:3441,393,0 chrIV 933005 . A T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.02;FS=0.000;HaplotypeScore=20.1658;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.13;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3499,381,0 chrIV 933019 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.67;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2921,333,0 chrIV 933319 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1637,189,0 chrIV 933755 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.69;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3336,378,0 chrIV 933821 . A G 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=133;Dels=0.00;FS=6.601;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.512;QD=22.74;ReadPosRankSum=2.394;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3057,348,0 chrIV 933861 . A G 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.295;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.100;QD=19.98;ReadPosRankSum=1.705;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2571,294,0 chrIV 933867 . C A 2581 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.65;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2614,291,0 chrIV 933896 . A G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.439;HaplotypeScore=5.1094;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.844;QD=21.04;ReadPosRankSum=1.703;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2495,279,0 chrIV 934007 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.82;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3153,354,0 chrIV 934175 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.21;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2809,306,0 chrIV 934184 . G A 2363 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.20;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2396,264,0 chrIV 934358 . T C 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.545;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-1.623;QD=18.60;ReadPosRankSum=1.623;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1800,207,0 chrIV 934364 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.88;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1696,195,0 chrIV 934468 . A G 2380 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.33;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2413,273,0 chrIV 934508 . A G 2499 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.36;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2532,288,0 chrIV 934657 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=104;Dels=0.00;FS=6.129;HaplotypeScore=4.6769;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.835;QD=21.68;ReadPosRankSum=2.894;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2288,258,0 chrIV 934903 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4843;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.277;QD=20.17;ReadPosRankSum=2.418;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3180,354,0 chrIV 934913 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.5974;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.33;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3232,348,0 chrIV 935012 . A G 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.958;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.815;QD=23.83;ReadPosRankSum=1.664;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2464,273,0 chrIV 935079 . G C 2521 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.50;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2554,294,0 chrIV 935099 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.68;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3218,360,0 chrIV 935138 . G A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.0969;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.65;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4326,471,0 chrIV 935575 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.76;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3778,426,0 chrIV 935830 . G A 6141.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.3408;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.00;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,262:267:99:6141,667,0 chrIV 935931 . G C 5618.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.41;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5618,630,0 chrIV 935959 . T C 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=222;Dels=0.00;FS=8.891;HaplotypeScore=16.7603;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-1.146;QD=21.27;ReadPosRankSum=3.302;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:4,216:222:99:4723,525,0 chrIV 936189 . C T 5221.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.5296;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.51;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5221,567,0 chrIV 936221 . A G 4992.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.89;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4992,561,0 chrIV 936279 . T C 2861 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0510;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.29;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2894,336,0 chrIV 936290 . A T 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=139;Dels=0.00;FS=2.991;HaplotypeScore=6.4909;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.363;QD=18.91;ReadPosRankSum=2.414;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2662,300,0 chrIV 936485 . T A 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.483;QD=18.42;ReadPosRankSum=-0.284;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2280,249,0 chrIV 936486 . G C 2203 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.91;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2236,252,0 chrIV 936739 . C G 2966 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.97;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2999,351,0 chrIV 936980 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.8210;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.20;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4240,483,0 chrIV 937139 . T C 4258.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.53;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4258,477,0 chrIV 937167 . C T 4260.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.41;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4260,468,0 chrIV 937517 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3176,357,0 chrIV 937717 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=92;Dels=0.00;FS=5.563;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.077;QD=22.98;ReadPosRankSum=1.694;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:2147,243,0 chrIV 937875 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.439;QD=24.63;ReadPosRankSum=2.418;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3891,447,0 chrIV 937973 . T C 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=15.3507;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.386;QD=23.53;ReadPosRankSum=1.705;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3092,351,0 chrIV 938009 . A T 4431.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4431,480,0 chrIV 938147 . A G 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=217;Dels=0.00;FS=6.059;HaplotypeScore=23.6604;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.145;QD=20.30;ReadPosRankSum=2.930;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:3,212:217:99:4405,504,0 chrIV 938225 . C T 6148.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=20.2392;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.94;SB=-3.464e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:6148,661,0 chrIV 938591 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.295;QD=21.77;ReadPosRankSum=1.677;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4092,474,0 chrIV 939572 . C A 5760.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=12.3544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5760,639,0 chrIV 939749 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.9973;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.317;QD=20.95;ReadPosRankSum=1.711;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3519,405,0 chrIV 940069 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.4704;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.08;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3710,417,0 chrIV 940217 . A G 4757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=214;Dels=0.00;FS=10.597;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.014;QD=22.23;ReadPosRankSum=2.939;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:4757,560,0 chrIV 940688 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.88;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3798,423,0 chrIV 940972 . G C 331 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=1.69;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:45:364,45,0 chrIV 940995 . T A 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.6766;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.174;QD=17.82;ReadPosRankSum=1.636;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3240,363,0 chrIV 941063 . T C 3990.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.57;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3990,465,0 chrIV 941099 . C T 4799.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.12;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4799,519,0 chrIV 941151 . T C 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.353;QD=20.37;ReadPosRankSum=1.633;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4299,486,0 chrIV 941441 . T C 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.344;DP=246;Dels=0.00;FS=8.111;HaplotypeScore=15.3859;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.195;QD=19.11;ReadPosRankSum=0.933;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:4702,516,0 chrIV 941901 . A C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=152;Dels=0.00;FS=6.167;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.844;QD=20.32;ReadPosRankSum=2.351;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3121,357,0 chrIV 942067 . T G 3114 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.35;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3147,366,0 chrIV 942069 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.59;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3303,363,0 chrIV 942264 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.03;FS=0.000;HaplotypeScore=42.1934;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.25;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3259,372,0 chrIV 942662 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4056,462,0 chrIV 942748 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=3.522;HaplotypeScore=10.0492;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.712;QD=22.96;ReadPosRankSum=-1.023;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3949,429,0 chrIV 942812 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.90;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4396,469,0 chrIV 942876 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3967,435,0 chrIV 943063 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.29;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3321,372,0 chrIV 943482 . A G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.381;QD=22.42;ReadPosRankSum=1.663;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2275,261,0 chrIV 943539 . T C 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=6.690;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.591;QD=20.42;ReadPosRankSum=1.697;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2055,240,0 chrIV 943586 . T C 1815 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.95;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1848,207,0 chrIV 943601 . A T 1872 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=21.03;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1905,213,0 chrIV 943625 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.10;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1626,174,0 chrIV 943632 . G T 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.205;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0200;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.226;QD=16.99;ReadPosRankSum=-0.828;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1596,174,0 chrIV 943703 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.62;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2114,231,0 chrIV 943783 . A C 1347 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.71;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1380,156,0 chrIV 944044 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.29;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4013,444,0 chrIV 944052 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=4.387;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.282;QD=20.43;ReadPosRankSum=1.676;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,183:187:99:3820,432,0 chrIV 944216 . G C 4199.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.21;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4199,474,0 chrIV 944433 . G C 3146 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.40;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3179,363,0 chrIV 944539 . G T 3118 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.76;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3151,339,0 chrIV 944564 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.99;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3268,357,0 chrIV 944691 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.708;HaplotypeScore=15.5982;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.218;QD=22.65;ReadPosRankSum=1.710;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3556,408,0 chrIV 945227 . A T 1683 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1716,183,0 chrIV 945419 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2508,282,0 chrIV 945517 . G T 2341 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.51;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2374,264,0 chrIV 945604 . T G 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=73;Dels=0.00;FS=10.165;HaplotypeScore=5.8677;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.558;QD=21.32;ReadPosRankSum=2.349;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1589,180,0 chrIV 945712 . A G 1091 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.82;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1124,129,0 chrIV 945813 . T A 1257 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=22.05;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1290,147,0 chrIV 945892 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=25.20;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1192,132,0 chrIV 945920 . G A 610 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=22.59;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:72:643,72,0 chrIV 946425 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=23.65;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1570,177,0 chrIV 946452 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=23.31;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1175,132,0 chrIV 946721 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1884,225,0 chrIV 946897 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.293;QD=23.09;ReadPosRankSum=1.706;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3127,360,0 chrIV 947024 . A G 4366.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.6726;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.28;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4366,492,0 chrIV 947175 . C A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.8033;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=16.13;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:3468,375,0 chrIV 947223 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.07;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:3167,366,0 chrIV 947270 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.83;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3646,396,0 chrIV 947379 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=21.2826;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.11;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3891,450,0 chrIV 947412 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=178;Dels=0.00;FS=3.979;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.217;QD=21.09;ReadPosRankSum=1.673;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3754,429,0 chrIV 947805 . C T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.49;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4632,519,0 chrIV 947829 . G T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.15;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4053,438,0 chrIV 947968 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.32;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3312,369,0 chrIV 947998 . T C 3123 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.63;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3156,360,0 chrIV 948037 . A T 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.814;QD=23.10;ReadPosRankSum=1.627;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3082,336,0 chrIV 948297 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3702,435,0 chrIV 948349 . C A 2394 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2427,267,0 chrIV 948494 . A G 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.294;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.976;QD=18.09;ReadPosRankSum=1.692;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1625,177,0 chrIV 948548 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.85;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1941,222,0 chrIV 948656 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.9468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3611,408,0 chrIV 948761 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.40;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4375,495,0 chrIV 948920 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3642,390,0 chrIV 949385 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.99;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3607,405,0 chrIV 949454 . A T 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=192;Dels=0.00;FS=3.968;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.317;QD=22.12;ReadPosRankSum=1.714;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4247,483,0 chrIV 949789 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=123;Dels=0.00;FS=8.379;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.463;QD=21.01;ReadPosRankSum=3.386;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2617,300,0 chrIV 949825 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.81;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3135,339,0 chrIV 949910 . A C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=143;Dels=0.00;FS=6.700;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.500;QD=20.47;ReadPosRankSum=2.415;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,138:143:99:2960,342,0 chrIV 949927 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=139;Dels=0.00;FS=10.853;HaplotypeScore=7.0377;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.181;QD=20.55;ReadPosRankSum=2.950;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2890,336,0 chrIV 950078 . A T 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=186;Dels=0.00;FS=6.933;HaplotypeScore=10.5460;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.380;QD=21.91;ReadPosRankSum=2.423;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4076,450,0 chrIV 950307 . G C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.00;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3612,420,0 chrIV 950368 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.06;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3327,381,0 chrIV 950411 . A G 3096 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.27;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3129,348,0 chrIV 950700 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=25.19;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3703,396,0 chrIV 950759 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.02;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3603,405,0 chrIV 950760 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.33;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3499,399,0 chrIV 951132 . T A 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=211;Dels=0.00;FS=7.332;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.227;QD=23.34;ReadPosRankSum=2.426;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4925,534,0 chrIV 951262 . G A 4598.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.1321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.82;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4598,498,0 chrIV 951351 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3586,402,0 chrIV 951669 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.70;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4061,441,0 chrIV 952018 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.48;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3598,387,0 chrIV 952270 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.538;QD=22.78;ReadPosRankSum=1.672;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2675,303,0 chrIV 952329 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=121;Dels=0.00;FS=7.071;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.961;QD=21.38;ReadPosRankSum=2.367;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2620,300,0 chrIV 952479 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.68;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2266,258,0 chrIV 952622 . T G 1841 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.59;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1874,219,0 chrIV 952679 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.81;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1552,174,0 chrIV 952698 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=18.57;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1686,192,0 chrIV 952701 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=18.51;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1773,195,0 chrIV 952937 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.61;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2520,279,0 chrIV 953287 . C G 4360.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.44;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4360,492,0 chrIV 953474 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=156;Dels=0.00;FS=3.038;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.205;QD=21.72;ReadPosRankSum=2.386;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3389,381,0 chrIV 953613 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.96;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3642,393,0 chrIV 953693 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=199;Dels=0.00;FS=3.032;HaplotypeScore=10.4453;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.788;QD=23.02;ReadPosRankSum=2.388;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4580,531,0 chrIV 953912 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.65;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3107,339,0 chrIV 954146 . T A 3003 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.46;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3036,333,0 chrIV 954283 . T C 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=3.000;HaplotypeScore=10.2100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.649;QD=22.86;ReadPosRankSum=2.404;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3680,420,0 chrIV 954475 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=3.487;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.417;QD=20.10;ReadPosRankSum=1.530;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3148,354,0 chrIV 954530 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=4.420;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.876;QD=21.96;ReadPosRankSum=1.711;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3645,417,0 chrIV 954939 . C T 5365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;DP=239;Dels=0.00;FS=3.392;HaplotypeScore=6.2902;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-1.019;QD=22.45;ReadPosRankSum=0.087;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5365,582,0 chrIV 954954 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.48;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4793,522,0 chrIV 954963 . G A 4472.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.87;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4472,483,0 chrIV 954985 . A C 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=243;Dels=0.00;FS=3.021;HaplotypeScore=9.2341;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.056;QD=17.04;ReadPosRankSum=2.368;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:4141,480,0 chrIV 955099 . C A 7388.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=24.0868;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.83;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,308:310:99:7388,802,0 chrIV 955140 . G A 6596.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=17.8328;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.23;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,280:284:99:6596,729,0 chrIV 955230 . T C 6376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=331;Dels=0.00;FS=8.805;HaplotypeScore=25.0908;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.630;QD=19.26;ReadPosRankSum=3.398;SB=-3.808e+03 GT:AD:DP:GQ:PL 1/1:4,326:331:99:6376,732,0 chrIV 955335 . A G 6302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.801;DP=303;Dels=0.00;FS=7.776;HaplotypeScore=8.7062;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.231;QD=20.80;ReadPosRankSum=3.785;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:5,296:303:99:6302,723,0 chrIV 955484 . T C 2441 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=33.3932;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=14.19;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2474,273,0 chrIV 955574 . T G 1857 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=16.73;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1890,216,0 chrIV 955620 . A C 1871 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.69;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1904,213,0 chrIV 955643 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0812;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.36;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1679,192,0 chrIV 955755 . T A 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.857;QD=20.29;ReadPosRankSum=1.694;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1879,210,0 chrIV 955831 . C T 1086 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=25.26;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1119,126,0 chrIV 955955 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.46;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1565,174,0 chrIV 956552 . C A 4589.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.8360;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.90;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4589,498,0 chrIV 956957 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.0528;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.68;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3879,441,0 chrIV 957002 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=143;Dels=0.00;FS=2.573;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.284;QD=22.45;ReadPosRankSum=2.951;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3244,372,0 chrIV 957131 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0068;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.54;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3606,402,0 chrIV 957311 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.05;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2548,279,0 chrIV 957317 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=133;Dels=0.00;FS=6.755;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-2.242;QD=16.52;ReadPosRankSum=2.412;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,128:133:99:2230,252,0 chrIV 957424 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.069;QD=21.80;ReadPosRankSum=3.369;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:4,115:119:99:2627,303,0 chrIV 957502 . C A 2050 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.81;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2083,231,0 chrIV 957673 . T G 944 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.27;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:977,114,0 chrIV 957722 . G A 1051 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.02;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1084,123,0 chrIV 957741 . T A 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.000;QD=20.89;ReadPosRankSum=1.670;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1203,132,0 chrIV 958319 . A C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=123;Dels=0.00;FS=10.140;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.173;QD=19.26;ReadPosRankSum=2.409;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2402,273,0 chrIV 958391 . A G 2264 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.20;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2297,261,0 chrIV 958426 . A T 2131 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.10;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2164,243,0 chrIV 958435 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.52;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2106,237,0 chrIV 958608 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.50;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2703,303,0 chrIV 958717 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.67;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1915,210,0 chrIV 959103 . C G 2802 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6318;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.95;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2835,315,0 chrIV 959248 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2891,315,0 chrIV 959287 . A G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.410;QD=22.47;ReadPosRankSum=1.598;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2977,336,0 chrIV 959371 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2571,282,0 chrIV 959478 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3319,372,0 chrIV 959563 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.380;QD=23.94;ReadPosRankSum=1.563;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3001,342,0 chrIV 959874 . T C 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4961;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.339;QD=22.84;ReadPosRankSum=1.696;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4454,504,0 chrIV 959997 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.57;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4030,447,0 chrIV 960100 . C G 3564.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.14;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3564,411,0 chrIV 960101 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=177;Dels=0.00;FS=6.024;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.233;QD=20.89;ReadPosRankSum=2.870;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3698,411,0 chrIV 960464 . G A 2581 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.87;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2614,288,0 chrIV 960570 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2530,279,0 chrIV 960787 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.23;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3135,339,0 chrIV 961189 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2450,276,0 chrIV 961505 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=112;Dels=0.00;FS=5.643;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.976;QD=22.85;ReadPosRankSum=1.701;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2592,297,0 chrIV 961848 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3841,417,0 chrIV 962437 . G T 5915.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=12.4638;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.11;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5915,651,0 chrIV 962533 . G T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.95;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4613,498,0 chrIV 962545 . G A 3870.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.24;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3870,417,0 chrIV 962923 . G T 2727 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.82;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2760,309,0 chrIV 962973 . C T 2778 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.87;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2811,321,0 chrIV 963004 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.764;QD=21.09;ReadPosRankSum=2.387;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3311,384,0 chrIV 963556 . C A 3049 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.92;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3082,348,0 chrIV 963777 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=170;Dels=0.00;FS=13.167;HaplotypeScore=13.8436;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.505;QD=22.16;ReadPosRankSum=3.377;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:4,165:170:99:3767,426,0 chrIV 964418 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.72;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2664,291,0 chrIV 964812 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.68;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1785,198,0 chrIV 964856 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.37;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1739,189,0 chrIV 964873 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.42;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1567,183,0 chrIV 964874 . A G 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.520;QD=19.47;ReadPosRankSum=1.689;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1591,183,0 chrIV 965394 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.60;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3481,375,0 chrIV 965404 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.51;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3238,363,0 chrIV 965755 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.80;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3499,378,0 chrIV 965951 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.42;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3124,345,0 chrIV 966228 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.97;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2261,255,0 chrIV 966299 . G A 1381 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=19.45;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1414,159,0 chrIV 966300 . A T 1356 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=19.65;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1389,159,0 chrIV 966303 . A C 1275 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=-0.415;QD=17.96;ReadPosRankSum=1.683;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1308,153,0 chrIV 966390 . A G 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=96;Dels=0.00;FS=6.160;HaplotypeScore=14.2328;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=-0.350;QD=21.24;ReadPosRankSum=2.398;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:2072,237,0 chrIV 966497 . C T 887 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=18.87;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:920,102,0 chrIV 966504 . C T 667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.101;DP=85;Dels=0.00;FS=18.132;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;MQRankSum=0.912;QD=7.85;ReadPosRankSum=7.850;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:46,38:85:39:700,39,0 chrIV 966514 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=45.4488;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=0.94;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:9:77,9,0 chrIV 966614 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=21.21;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3215,342,0 chrIV 966626 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.11;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2900,336,0 chrIV 966653 . T C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=-0.793;QD=17.54;ReadPosRankSum=2.345;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2506,282,0 chrIV 966662 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=17.44;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2388,270,0 chrIV 966686 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7096;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=14.74;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:1861,207,0 chrIV 966713 . T G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;MQRankSum=-0.530;QD=16.82;ReadPosRankSum=1.675;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2085,246,0 chrIV 966952 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=3.416;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.031;QD=20.12;ReadPosRankSum=1.701;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2286,258,0 chrIV 966953 . C G 2259 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.17;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2292,258,0 chrIV 966980 . T C 1854 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=15.20;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1887,219,0 chrIV 967004 . A T 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;MQRankSum=-0.315;QD=15.11;ReadPosRankSum=1.706;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2028,225,0 chrIV 967019 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=13.78;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2031,225,0 chrIV 967037 . T C 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-0.904;QD=12.37;ReadPosRankSum=2.415;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:1765,204,0 chrIV 967042 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=13.74;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2012,219,0 chrIV 967786 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.32;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3002,327,0 chrIV 967787 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=9.152;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.854;QD=21.27;ReadPosRankSum=2.281;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2841,324,0 chrIV 967934 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.47;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2325,252,0 chrIV 968331 . G A 4950.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.6413;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.91;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4950,532,0 chrIV 968466 . G A 4317.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.48;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4317,471,0 chrIV 969246 . T C 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=105;Dels=0.00;FS=6.970;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.133;QD=20.05;ReadPosRankSum=2.401;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,100:105:99:2138,252,0 chrIV 969384 . C A 2325 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2358,267,0 chrIV 969561 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.08;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2175,234,0 chrIV 969643 . T G 2223 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.78;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2256,255,0 chrIV 970293 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2835,321,0 chrIV 970434 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.8482;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.37;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3622,405,0 chrIV 970494 . G T 2540 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.88;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2573,288,0 chrIV 970658 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.16;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3721,399,0 chrIV 970880 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.65;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3307,366,0 chrIV 971073 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.003;QD=22.24;ReadPosRankSum=1.680;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:3057,345,0 chrIV 971153 . C T 2263 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.76;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2296,252,0 chrIV 971172 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.01;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2254,255,0 chrIV 971441 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.59;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2840,315,0 chrIV 971579 . C A 1685 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1718,186,0 chrIV 971728 . C T 1348 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1381,153,0 chrIV 971787 . A T 2052 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2085,231,0 chrIV 971873 . T C 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.792;QD=25.39;ReadPosRankSum=1.633;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1810,201,0 chrIV 971904 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.22;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1519,168,0 chrIV 972096 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=165;Dels=0.00;FS=4.242;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.069;QD=23.08;ReadPosRankSum=1.711;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3808,432,0 chrIV 972240 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=177;Dels=0.00;FS=6.939;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.091;QD=21.73;ReadPosRankSum=2.393;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3847,453,0 chrIV 972369 . T C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=3.884;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.118;QD=22.12;ReadPosRankSum=1.715;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4512,516,0 chrIV 972414 . A G 3866.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.97;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3866,435,0 chrIV 972429 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.7608;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.15;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4124,453,0 chrIV 972465 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.1712;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.20;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4473,507,0 chrIV 972540 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.205;DP=187;Dels=0.00;FS=5.250;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.033;QD=20.21;ReadPosRankSum=3.413;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:5,181:187:99:3780,435,0 chrIV 972660 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.09;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4087,462,0 chrIV 973137 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.04;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3801,411,0 chrIV 973794 . G T 2716 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.90;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2749,303,0 chrIV 974630 . A G 1573 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.66;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1606,186,0 chrIV 974632 . T C 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.472;QD=19.27;ReadPosRankSum=1.687;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1555,177,0 chrIV 974689 . T A 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.130;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.118;QD=18.25;ReadPosRankSum=1.693;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1639,186,0 chrIV 974731 . T C 2487 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.82;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2520,282,0 chrIV 974990 . T A 2874 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.77;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2907,336,0 chrIV 975090 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=7.036;HaplotypeScore=5.4681;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.421;QD=23.28;ReadPosRankSum=2.397;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3282,372,0 chrIV 975108 . A G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.042;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.636;QD=20.80;ReadPosRankSum=1.682;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2945,336,0 chrIV 975126 . G T 3081 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.85;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3114,336,0 chrIV 975252 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.269;QD=24.09;ReadPosRankSum=1.683;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3421,390,0 chrIV 975354 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.1308;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.46;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3743,408,0 chrIV 975573 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.47;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4061,453,0 chrIV 975612 . C A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.7832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3693,405,0 chrIV 975702 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.38;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3694,399,0 chrIV 976174 . G A 2400 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2433,264,0 chrIV 976264 . A G 2078 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.84;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2111,246,0 chrIV 976318 . A G 2649 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.76;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2682,303,0 chrIV 976876 . G T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4552,513,0 chrIV 977181 . G A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.96;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4217,456,0 chrIV 977275 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=130;Dels=0.00;FS=9.476;HaplotypeScore=10.3329;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.785;QD=21.10;ReadPosRankSum=2.355;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2776,309,0 chrIV 977306 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.41;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3081,345,0 chrIV 977428 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.45;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2884,318,0 chrIV 977456 . A G 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.573;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.761;QD=21.38;ReadPosRankSum=1.635;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2321,264,0 chrIV 977485 . A G 2025 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=18.75;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2058,237,0 chrIV 977487 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=18.80;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2120,237,0 chrIV 977508 . G A 2188 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=16.09;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2221,243,0 chrIV 977666 . G C 4013.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=24.77;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4013,462,0 chrIV 977767 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.57;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4196,471,0 chrIV 978043 . A G 4735.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.86;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4735,552,0 chrIV 978384 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.55;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2766,303,0 chrIV 978570 . A G 2933 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.57;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2966,336,0 chrIV 978598 . A G 2904 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.89;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2937,333,0 chrIV 978636 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.72;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3100,336,0 chrIV 978778 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.09;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3170,348,0 chrIV 978893 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.270;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.703;QD=20.86;ReadPosRankSum=1.707;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2953,339,0 chrIV 978959 . T C 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=11.9661;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.636;QD=19.90;ReadPosRankSum=0.770;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2202,255,0 chrIV 979492 . T C 2285 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.97;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2318,264,0 chrIV 979529 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=18.83;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1954,222,0 chrIV 979539 . G T 2170 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=18.87;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2203,246,0 chrIV 979584 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=18.50;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2216,252,0 chrIV 979668 . T G 3036 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.2314;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=21.84;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3069,351,0 chrIV 979706 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=24.41;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3296,366,0 chrIV 979786 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=113.8989;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=19.56;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2595,282,0 chrIV 979805 . T G 2319 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=17.31;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2352,267,0 chrIV 979813 . T C 2108 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=15.73;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2141,246,0 chrIV 979873 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;QD=10.95;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1687,192,0 chrIV 979879 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=11.65;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1804,195,0 chrIV 979891 . T G 2092 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=12.60;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2125,243,0 chrIV 979901 . T C 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;MQRankSum=-1.015;QD=12.62;ReadPosRankSum=1.712;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2165,246,0 chrIV 979931 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;MQRankSum=0.217;QD=16.19;ReadPosRankSum=1.712;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:2883,333,0 chrIV 979973 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=20.99;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3160,348,0 chrIV 979983 . A G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=-0.577;QD=19.90;ReadPosRankSum=1.706;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2739,312,0 chrIV 980016 . A T 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;MQRankSum=-0.396;QD=20.68;ReadPosRankSum=1.678;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2659,303,0 chrIV 980072 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=22.15;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2691,285,0 chrIV 980090 . T C 2425 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=20.55;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2458,273,0 chrIV 980269 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=92.4291;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.42;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2092,231,0 chrIV 980341 . T C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.952;QD=19.85;ReadPosRankSum=1.670;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2236,255,0 chrIV 980364 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2643;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.27;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2564,285,0 chrIV 980428 . T C 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=0.497;QD=21.74;ReadPosRankSum=1.702;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2555,279,0 chrIV 980461 . T G 2608 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.50;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2641,303,0 chrIV 980521 . T A 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.01;FS=3.461;HaplotypeScore=18.7369;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.220;QD=21.65;ReadPosRankSum=1.708;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3129,339,0 chrIV 980614 . T G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=148;Dels=0.00;FS=5.893;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;MQRankSum=1.075;QD=19.90;ReadPosRankSum=2.952;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:2978,336,0 chrIV 980617 . C G 2796 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=19.28;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2829,321,0 chrIV 980652 . A C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=19.46;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3405,393,0 chrIV 980706 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=21.61;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3480,387,0 chrIV 980779 . G C 2939 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.93;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2972,345,0 chrIV 980816 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=22.75;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3322,375,0 chrIV 980844 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=139;Dels=0.00;FS=2.524;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=-1.935;QD=20.38;ReadPosRankSum=2.950;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2866,344,0 chrIV 980857 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=21.41;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2924,336,0 chrIV 980873 . T G 2414 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=20.46;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2447,291,0 chrIV 980906 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=18.19;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1652,189,0 chrIV 980919 . A G 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;MQRankSum=-2.364;QD=17.78;ReadPosRankSum=2.858;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1438,168,0 chrIV 980934 . A G 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;MQRankSum=-1.251;QD=18.21;ReadPosRankSum=2.279;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1344,156,0 chrIV 980935 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=18.06;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1333,156,0 chrIV 981066 . A T 514 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=16.58;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:547,69,0 chrIV 981071 . T C 417 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.23;MQ0=0;QD=15.44;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:60:450,60,0 chrIV 981074 . G T 255 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=0;QD=15.94;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:39:288,39,0 chrIV 981075 . A T 254 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=0;QD=15.87;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:39:287,39,0 chrIV 981087 . T C 167.01 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=16.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:27:200,27,0 chrIV 981096 . G C 145.03 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=16.11;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:178,24,0 chrIV 981110 . C T 97.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=13.88;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 981112 . C T 97.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=13.88;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 981139 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrIV 981159 . C T 17.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=2.9704;MLEAC=1;MLEAF=0.500;MQ=30.77;MQ0=0;MQRankSum=-0.731;QD=3.43;ReadPosRankSum=-0.731;SB=0.120 GT:AD:DP:GQ:PL 0/1:1,4:5:17:47,0,17 chrIV 987158 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=4.9062;MLEAC=2;MLEAF=1.00;MQ=11.83;MQ0=17;MQRankSum=1.026;QD=0.94;ReadPosRankSum=1.026;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:7,14:21:6:51,6,0 chrIV 992469 . G A 272 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=17;QD=7.35;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:17,20:37:36:305,36,0 chrIV 992797 . G C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.361;DP=146;Dels=0.00;FS=3.522;HaplotypeScore=129.5451;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;MQRankSum=0.313;QD=20.74;ReadPosRankSum=1.708;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3061,348,0 chrIV 992912 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.0121;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.45;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3162,357,0 chrIV 992975 . C A 2270 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=18.46;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2303,261,0 chrIV 993037 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=15.66;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1896,207,0 chrIV 993060 . T A 1888 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=16.56;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1921,213,0 chrIV 993078 . T C 2063 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=17.48;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2096,234,0 chrIV 993128 . A G 2179 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.79;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2212,252,0 chrIV 993303 . A G 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=132;Dels=0.00;FS=4.150;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.705;QD=22.34;ReadPosRankSum=1.679;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2982,336,0 chrIV 993336 . A T 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=3.639;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.307;QD=23.41;ReadPosRankSum=1.708;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3301,357,0 chrIV 993391 . A T 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.128;QD=24.90;ReadPosRankSum=1.662;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3710,402,0 chrIV 993416 . T A 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=3.617;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.556;QD=22.54;ReadPosRankSum=1.682;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3144,357,0 chrIV 993571 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.61;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3232,375,0 chrIV 993715 . T C 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.721;QD=21.86;ReadPosRankSum=1.707;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3050,354,0 chrIV 993979 . C T 1209 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.9010;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.70;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1242,135,0 chrIV 994023 . A G 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.5174;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.472;QD=8.82;ReadPosRankSum=1.693;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:853,99,0 chrIV 994124 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.44;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2036,237,0 chrIV 994135 . A T 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=103;Dels=0.00;FS=9.714;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.370;QD=18.98;ReadPosRankSum=2.354;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1988,225,0 chrIV 994230 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.102;QD=23.03;ReadPosRankSum=1.701;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2589,297,0 chrIV 994605 . A T 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=3.112;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.034;QD=22.81;ReadPosRankSum=1.598;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2975,336,0 chrIV 994719 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3711,399,0 chrIV 995637 . T C 1708 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1741,198,0 chrIV 995820 . G A 341 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=14.21;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:42:374,42,0 chrIV 995837 . T C 559 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.97;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:592,69,0 chrIV 995898 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.34;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1530,168,0 chrIV 996015 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.70;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2182,249,0 chrIV 996431 . T A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=16.9866;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=20.51;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4144,459,0 chrIV 997472 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.925;QD=22.72;ReadPosRankSum=1.712;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4022,468,0 chrIV 997511 . T A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.78;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3639,402,0 chrIV 997571 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3879,435,0 chrIV 998004 . G T 5581.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.25;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5581,615,0 chrIV 998350 . G T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=17.3738;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.61;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3431,375,0 chrIV 998484 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=0.742;QD=21.41;ReadPosRankSum=1.711;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3447,399,0 chrIV 998627 . A T 2461 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=6.2957;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=15.98;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2494,270,0 chrIV 998628 . A T 2397 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=154;Dels=0.01;FS=3.007;HaplotypeScore=6.2957;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;MQRankSum=-2.112;QD=15.56;ReadPosRankSum=2.417;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2430,270,0 chrIV 998630 . T C 2258 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.041;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5070;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;MQRankSum=-0.366;QD=14.95;ReadPosRankSum=-0.399;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2291,264,0 chrIV 998631 . T A 2373 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2957;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;MQRankSum=0.930;QD=15.61;ReadPosRankSum=1.124;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2406,267,0 chrIV 998635 . A G 2402 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2957;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=13.80;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2435,276,0 chrIV 998658 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=11.27;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2016,231,0 chrIV 998676 . T C 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=3.245;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;MQRankSum=-1.165;QD=11.80;ReadPosRankSum=1.712;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2051,240,0 chrIV 998702 . G T 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6233;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;MQRankSum=1.122;QD=15.14;ReadPosRankSum=1.496;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:2697,291,0 chrIV 998712 . A C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=2.939;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=1.464;QD=13.60;ReadPosRankSum=2.420;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,165:170:99:2345,267,0 chrIV 998725 . C G 2719 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.78;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2752,318,0 chrIV 998786 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.75;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3344,360,0 chrIV 998825 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=23.09;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3267,351,0 chrIV 998899 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=23.18;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3963,447,0 chrIV 999214 . T A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4086,447,0 chrIV 999271 . A G 4222.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4222,477,0 chrIV 999384 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.16;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2657,288,0 chrIV 999431 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=163;Dels=0.00;FS=3.376;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.259;QD=24.25;ReadPosRankSum=1.668;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3952,444,0 chrIV 999562 . A G 2493 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.68;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2526,285,0 chrIV 999628 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3355,384,0 chrIV 999724 . C T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4150,447,0 chrIV 999930 . T C 2515 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.28;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2548,279,0 chrIV 1000380 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.9442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3982,441,0 chrIV 1001608 . C G 2529 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.07;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2562,288,0 chrIV 1001667 . A G 3111 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0480;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.87;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3144,360,0 chrIV 1001692 . A G 3200 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0255;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.02;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3233,375,0 chrIV 1001907 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.03;FS=0.000;HaplotypeScore=15.1714;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=15.18;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2447,267,0 chrIV 1001916 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.7928;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=1.594;QD=16.12;ReadPosRankSum=0.860;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2500,282,0 chrIV 1002119 . C A 2387 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.31;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2420,267,0 chrIV 1002178 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.02;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2177,246,0 chrIV 1002467 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2734,297,0 chrIV 1002837 . A G 7097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=333;Dels=0.00;FS=3.395;HaplotypeScore=19.7111;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.585;QD=21.31;ReadPosRankSum=1.722;SB=-3.729e+03 GT:AD:DP:GQ:PL 1/1:1,329:333:99:7097,827,0 chrIV 1003188 . A T 6102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=292;Dels=0.00;FS=5.977;HaplotypeScore=20.6877;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.223;QD=20.90;ReadPosRankSum=2.949;SB=-3.458e+03 GT:AD:DP:GQ:PL 1/1:3,289:292:99:6102,664,0 chrIV 1003263 . G A 4985.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.25;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4985,570,0 chrIV 1003376 . A C 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.180;QD=19.86;ReadPosRankSum=1.683;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4249,474,0 chrIV 1003597 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.736;QD=23.14;ReadPosRankSum=1.709;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3541,402,0 chrIV 1003693 . C A 2962 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.61;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2995,330,0 chrIV 1003797 . A G 2395 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=18.42;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2428,276,0 chrIV 1003798 . A G 2462 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=19.23;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2495,282,0 chrIV 1003812 . T C 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;MQRankSum=-0.195;QD=18.04;ReadPosRankSum=0.247;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2450,255,0 chrIV 1003824 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=18.20;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2453,273,0 chrIV 1003851 . A G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=4.136;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=-0.887;QD=16.91;ReadPosRankSum=1.678;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2214,261,0 chrIV 1003950 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=3.332;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.907;QD=24.18;ReadPosRankSum=1.711;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4063,465,0 chrIV 1004480 . T A 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=8.625;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.040;QD=21.84;ReadPosRankSum=2.353;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3341,357,0 chrIV 1004753 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2969,327,0 chrIV 1005047 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4040,450,0 chrIV 1005151 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3725,414,0 chrIV 1005257 . A G 4957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=226;Dels=0.00;FS=2.535;HaplotypeScore=17.0385;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.013;QD=21.93;ReadPosRankSum=2.556;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:4957,564,0 chrIV 1005358 . C G 4351.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.3893;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.31;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4351,495,0 chrIV 1005614 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=206;Dels=0.00;FS=3.226;HaplotypeScore=17.4955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.740;QD=21.17;ReadPosRankSum=1.715;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4362,513,0 chrIV 1005656 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.05;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3903,450,0 chrIV 1005728 . T C 4740.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=23.58;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4740,546,0 chrIV 1005839 . T C 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=216;Dels=0.00;FS=3.176;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.554;QD=22.44;ReadPosRankSum=1.700;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4848,555,0 chrIV 1006075 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.3951;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.30;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2773,303,0 chrIV 1006085 . G A 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.4058;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=1.596;QD=18.15;ReadPosRankSum=-0.286;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2374,264,0 chrIV 1006213 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.43;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2947,327,0 chrIV 1006240 . T C 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.078;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.332;QD=22.08;ReadPosRankSum=1.705;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2903,330,0 chrIV 1006397 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.77;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3542,381,0 chrIV 1006510 . G C 5184.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.45;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5184,585,0 chrIV 1006661 . A C 5073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.0708;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.670;QD=22.65;ReadPosRankSum=1.701;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5073,576,0 chrIV 1006922 . T A 4297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.4153;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.021;QD=23.10;ReadPosRankSum=1.713;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4297,477,0 chrIV 1007012 . T G 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.358;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.799;QD=22.63;ReadPosRankSum=1.710;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3531,411,0 chrIV 1007086 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.90;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3021,330,0 chrIV 1007180 . A G 3149 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9604;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.28;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3182,363,0 chrIV 1007414 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.47;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3224,351,0 chrIV 1007597 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.6555;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.09;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,178:183:99:4226,456,0 chrIV 1007834 . G T 4596.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.21;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4596,519,0 chrIV 1008485 . A G 2455 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.48;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2488,285,0 chrIV 1008685 . T A 859 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.34;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:892,99,0 chrIV 1008843 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.21;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1171,129,0 chrIV 1008848 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.44;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1158,126,0 chrIV 1008896 . C T 802 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:93:835,93,0 chrIV 1009606 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=169;Dels=0.00;FS=2.826;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.213;QD=22.04;ReadPosRankSum=2.391;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3725,426,0 chrIV 1009654 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=6.774;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.363;QD=24.22;ReadPosRankSum=2.414;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3367,378,0 chrIV 1009914 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=15.7193;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.98;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3006,330,0 chrIV 1009977 . A G 2474 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.28;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2507,285,0 chrIV 1010028 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=12.2445;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.03;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1803,195,0 chrIV 1010069 . A T 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.195;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.830;QD=21.36;ReadPosRankSum=1.624;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2084,234,0 chrIV 1010115 . G A 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.114;QD=20.60;ReadPosRankSum=-1.687;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3185,354,0 chrIV 1010124 . T C 3110 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.08;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3143,360,0 chrIV 1010256 . T C 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=126;Dels=0.00;FS=2.814;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.053;QD=22.49;ReadPosRankSum=2.410;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2867,330,0 chrIV 1010349 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.070;QD=22.22;ReadPosRankSum=1.676;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2788,312,0 chrIV 1010478 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2810,318,0 chrIV 1010565 . T C 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=6.434;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.631;QD=20.20;ReadPosRankSum=2.326;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2437,285,0 chrIV 1010589 . G C 2679 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.70;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2712,309,0 chrIV 1010668 . T G 3124 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0545;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=22.47;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3157,354,0 chrIV 1010750 . A G 3015 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.3092;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.84;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3048,345,0 chrIV 1010823 . T C 4238.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.96;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4238,486,0 chrIV 1010838 . C G 3760.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=20.66;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3760,429,0 chrIV 1010878 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=9.63;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:2093,228,0 chrIV 1010886 . G A 1053.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.536;DP=210;Dels=0.00;FS=35.177;HaplotypeScore=74.8204;MLEAC=1;MLEAF=0.500;MQ=40.08;MQ0=0;MQRankSum=4.732;QD=5.01;ReadPosRankSum=-8.932;SB=-7.440e+02 GT:AD:DP:GQ:PL 0/1:115,95:210:99:1083,0,364 chrIV 1010910 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=170;Dels=0.00;FS=5.478;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-1.479;QD=9.75;ReadPosRankSum=2.935;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:1690,192,0 chrIV 1011237 . G A 6650.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=27.4397;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.01;SB=-3.576e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:6650,726,0 chrIV 1011299 . C G 7357.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=17.9934;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.81;SB=-3.455e+03 GT:AD:DP:GQ:PL 1/1:0,305:309:99:7357,837,0 chrIV 1011430 . C T 6081.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.03;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6081,655,0 chrIV 1011449 . C T 5760.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.07;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5760,642,0 chrIV 1011936 . A T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.37;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3697,414,0 chrIV 1011970 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.491;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.373;QD=19.46;ReadPosRankSum=3.736;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:5,155:160:99:3146,351,0 chrIV 1012073 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.4542;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=13.83;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1236,141,0 chrIV 1012128 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;DP=55;Dels=0.00;FS=11.114;HaplotypeScore=15.5466;MLEAC=1;MLEAF=0.500;MQ=49.96;MQ0=0;MQRankSum=-4.859;QD=0.24;ReadPosRankSum=-3.478;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:36,19:55:43:43,0,352 chrIV 1012387 . A C 6670.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=14.1035;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.08;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6670,753,0 chrIV 1012624 . A G 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=237;Dels=0.00;FS=2.475;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.721;QD=21.88;ReadPosRankSum=2.944;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:3,232:237:99:5185,591,0 chrIV 1012746 . T C 4767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=230;Dels=0.00;FS=6.078;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=1.335;QD=20.73;ReadPosRankSum=2.396;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4767,543,0 chrIV 1012757 . T C 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=227;Dels=0.00;FS=5.965;HaplotypeScore=9.5140;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-2.067;QD=20.63;ReadPosRankSum=2.915;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:3,222:227:99:4682,537,0 chrIV 1012819 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.67;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3808,426,0 chrIV 1012978 . G C 3202 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.4049;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.79;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3235,378,0 chrIV 1013112 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.94;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1591,168,0 chrIV 1013259 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1206,132,0 chrIV 1013385 . T G 2422 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.51;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2455,279,0 chrIV 1013721 . T A 2661 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.31;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2694,294,0 chrIV 1013924 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.97;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3340,384,0 chrIV 1013982 . C G 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;DP=204;Dels=0.00;FS=1.952;HaplotypeScore=8.1258;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=0;MQRankSum=-0.609;QD=0.08;ReadPosRankSum=-3.114;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:198,4:204:47:47,0,114 chrIV 1013983 . C G 86.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;DP=205;Dels=0.00;FS=1.946;HaplotypeScore=8.9144;MLEAC=1;MLEAF=0.500;MQ=53.33;MQ0=0;MQRankSum=-0.709;QD=0.42;ReadPosRankSum=3.280;SB=-2.286e+03 GT:AD:DP:GQ:PL 0/1:4,199:205:24:116,0,24 chrIV 1014713 . G T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.7047;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.27;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3269,363,0 chrIV 1015229 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.74;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4725,522,0 chrIV 1015515 . G A 5561.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.3262;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.56;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5561,601,0 chrIV 1015807 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.80;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2770,315,0 chrIV 1015826 . T A 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=6.140;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.140;QD=22.66;ReadPosRankSum=1.670;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2548,282,0 chrIV 1015888 . T A 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.704;QD=20.11;ReadPosRankSum=1.570;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1320,141,0 chrIV 1015897 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.13;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1322,147,0 chrIV 1016050 . T C 1170 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.46;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1203,141,0 chrIV 1016056 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=16.96;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1203,135,0 chrIV 1016102 . C A 1645 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.08;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1678,183,0 chrIV 1016282 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.44;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2869,324,0 chrIV 1016426 . C A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.01;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3475,378,0 chrIV 1016592 . A G 3094 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=20.77;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3127,345,0 chrIV 1016597 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-0.407;QD=19.42;ReadPosRankSum=1.639;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2946,333,0 chrIV 1016685 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=22.14;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2070,234,0 chrIV 1016762 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=0.28;SB=-5.277e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:6:48,6,0 chrIV 1016821 . A T 644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=1.074;QD=15.33;ReadPosRankSum=2.833;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:3,39:42:78:677,78,0 chrIV 1016858 . T A 707 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.20;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:740,81,0 chrIV 1017026 . T G 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.519;QD=24.49;ReadPosRankSum=1.626;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1625,180,0 chrIV 1017175 . C A 2264 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.77;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2297,249,0 chrIV 1017181 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.21;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2133,240,0 chrIV 1017301 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.64;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2886,309,0 chrIV 1017561 . T C 1675 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=17.82;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1708,192,0 chrIV 1017562 . T C 1626 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=17.48;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1659,189,0 chrIV 1017580 . T A 1578 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=16.10;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1611,174,0 chrIV 1017607 . T C 1119 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=81;Dels=0.00;FS=11.541;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;MQRankSum=-1.463;QD=13.81;ReadPosRankSum=2.788;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1152,135,0 chrIV 1017608 . A G 1133 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=13.82;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1166,135,0 chrIV 1017610 . A C 1187 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=14.48;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1220,135,0 chrIV 1017642 . T C 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=97;Dels=0.00;FS=3.052;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=0.901;QD=17.61;ReadPosRankSum=2.399;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1741,198,0 chrIV 1017702 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=24.06;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2655,300,0 chrIV 1017743 . A C 2274 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=22.29;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2307,258,0 chrIV 1017759 . G T 2145 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=21.67;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2178,240,0 chrIV 1017792 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=21.44;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2370,264,0 chrIV 1017846 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=18.50;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2383,270,0 chrIV 1017855 . T A 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;MQRankSum=-0.577;QD=17.50;ReadPosRankSum=1.678;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2291,258,0 chrIV 1017873 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=16.10;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2271,243,0 chrIV 1017895 . A G 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.383;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;MQRankSum=-0.332;QD=14.16;ReadPosRankSum=1.708;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2101,243,0 chrIV 1017902 . A G 1929 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=13.12;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:1962,225,0 chrIV 1017936 . T G 2717 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=18.23;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2750,312,0 chrIV 1017981 . T A 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=154;Dels=0.00;FS=2.805;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-1.843;QD=22.94;ReadPosRankSum=2.338;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3533,387,0 chrIV 1018014 . A T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.21;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3946,438,0 chrIV 1018133 . C G 3098 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.45;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3131,357,0 chrIV 1018177 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.61;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2641,294,0 chrIV 1018193 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.20;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2801,309,0 chrIV 1018395 . A G 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=108;Dels=0.00;FS=3.304;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=0.146;QD=22.56;ReadPosRankSum=1.667;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2470,276,0 chrIV 1018516 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=23.27;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2779,309,0 chrIV 1018535 . C A 2423 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=23.30;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2456,261,0 chrIV 1018571 . A C 1577 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=19.96;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1610,180,0 chrIV 1018602 . C A 1579 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=17.74;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1612,177,0 chrIV 1018608 . C A 1593 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=16.95;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1626,183,0 chrIV 1018669 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=20.33;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2493,270,0 chrIV 1018675 . T G 2308 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=18.46;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2341,270,0 chrIV 1018697 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=18.25;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2059,234,0 chrIV 1018736 . A G 771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=65;Dels=0.00;FS=2.635;HaplotypeScore=52.3105;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;MQRankSum=-1.735;QD=11.86;ReadPosRankSum=2.892;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:93:804,93,0 chrIV 1018751 . G A 771 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=13.07;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:87:804,87,0 chrIV 1018764 . G T 887 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=15.84;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:920,99,0 chrIV 1018775 . C A 1030 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=16.61;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1063,120,0 chrIV 1018835 . A C 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.751;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.408;QD=21.62;ReadPosRankSum=1.698;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2238,252,0 chrIV 1018905 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.02;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1376,150,0 chrIV 1019082 . T C 2394 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2427,273,0 chrIV 1019195 . T A 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=2.912;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.331;QD=21.64;ReadPosRankSum=1.975;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3171,363,0 chrIV 1019208 . A G 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=133;Dels=0.00;FS=7.976;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.643;QD=23.29;ReadPosRankSum=2.375;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3130,348,0 chrIV 1019310 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=149;Dels=0.00;FS=6.412;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.556;QD=23.33;ReadPosRankSum=2.367;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3476,396,0 chrIV 1019506 . A G 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.307;QD=19.80;ReadPosRankSum=1.683;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2864,321,0 chrIV 1019509 . A G 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=144;Dels=0.00;FS=6.113;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-2.140;QD=18.30;ReadPosRankSum=2.346;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2668,303,0 chrIV 1019664 . T C 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.485;QD=21.72;ReadPosRankSum=2.419;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3541,408,0 chrIV 1019794 . G A 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=2.265;QD=24.13;ReadPosRankSum=-0.495;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4513,475,0 chrIV 1020081 . A T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4252,459,0 chrIV 1020193 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.03;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2941,315,0 chrIV 1020194 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.36;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2853,315,0 chrIV 1020213 . C G 2606 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.36;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2639,300,0 chrIV 1020315 . G C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6056;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.68;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3515,414,0 chrIV 1020356 . A C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=136;Dels=0.00;FS=3.019;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.083;QD=21.14;ReadPosRankSum=2.376;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2908,336,0 chrIV 1020493 . C A 2825 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2858,309,0 chrIV 1020625 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.72;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2538,282,0 chrIV 1020636 . A G 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.257;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.214;QD=17.94;ReadPosRankSum=1.705;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2311,264,0 chrIV 1020939 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.16;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4169,456,0 chrIV 1021040 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5546;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.373;QD=22.53;ReadPosRankSum=1.688;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3582,374,0 chrIV 1022238 . G C 3950.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3950,456,0 chrIV 1022417 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=21.31;ReadPosRankSum=1.711;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3537,405,0 chrIV 1022660 . T A 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.494;QD=22.57;ReadPosRankSum=1.653;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2990,330,0 chrIV 1022874 . A G 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.867;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.076;QD=23.07;ReadPosRankSum=1.714;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4383,510,0 chrIV 1022903 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=23.84;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4124,453,0 chrIV 1023018 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0308;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.80;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3717,420,0 chrIV 1023058 . C G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=22.76;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3756,414,0 chrIV 1023474 . A T 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=3.25;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:44,6,0 chrIV 1023476 . C T 69.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=6.32;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:102,12,0 chrIV 1023685 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=24.16;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3005,330,0 chrIV 1024279 . T C 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.2762;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.211;QD=22.63;ReadPosRankSum=1.698;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4707,525,0 chrIV 1024375 . C A 5522.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.60;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5522,595,0 chrIV 1024582 . A C 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=225;Dels=0.00;FS=6.981;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.093;QD=22.48;ReadPosRankSum=2.395;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5059,567,0 chrIV 1024629 . C G 4569.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.73;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4569,516,0 chrIV 1024985 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=152;Dels=0.00;FS=3.024;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.733;QD=22.85;ReadPosRankSum=2.417;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3473,405,0 chrIV 1025085 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3387,372,0 chrIV 1025323 . T C 4097.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4097,465,0 chrIV 1025748 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.6839;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.06;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4058,450,0 chrIV 1025949 . G A 5032.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.36;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5032,564,0 chrIV 1026600 . T A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.26;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3360,363,0 chrIV 1026759 . A T 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.142;QD=22.93;ReadPosRankSum=1.661;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3348,366,0 chrIV 1026927 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.89;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3187,354,0 chrIV 1027140 . A T 2930 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.63;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2963,330,0 chrIV 1027623 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=3.281;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.965;QD=21.15;ReadPosRankSum=1.662;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3206,378,0 chrIV 1027653 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.91;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3149,354,0 chrIV 1027767 . A G 3063 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.3017;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.88;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3096,354,0 chrIV 1028050 . C T 5438.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5438,580,0 chrIV 1028400 . C T 4517.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4517,507,0 chrIV 1028937 . A G 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=179;Dels=0.00;FS=6.244;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.076;QD=21.72;ReadPosRankSum=2.325;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3888,447,0 chrIV 1029103 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9188;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.84;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3538,381,0 chrIV 1029540 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.91;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3299,357,0 chrIV 1030143 . T A 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=4.214;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=1.076;QD=23.24;ReadPosRankSum=1.696;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2241,246,0 chrIV 1030162 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.64;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2097,228,0 chrIV 1030171 . A T 2208 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.23;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2241,243,0 chrIV 1030251 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.88;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2458,270,0 chrIV 1030368 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.4303;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.81;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2218,255,0 chrIV 1030401 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=108.2597;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.65;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2271,246,0 chrIV 1030607 . G C 4238.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.29;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4238,489,0 chrIV 1030683 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.2391;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.38;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3894,438,0 chrIV 1031318 . T G 3447.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=8.9784;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.82;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3447,399,0 chrIV 1031350 . A G 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=180;Dels=0.00;FS=2.851;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.021;QD=21.86;ReadPosRankSum=2.422;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3935,447,0 chrIV 1031473 . C T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.53;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3852,426,0 chrIV 1031550 . T A 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=4.421;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.073;QD=24.65;ReadPosRankSum=1.557;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2966,318,0 chrIV 1031637 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=3.011;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.128;QD=24.04;ReadPosRankSum=2.391;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3038,348,0 chrIV 1031723 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4213;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2754,294,0 chrIV 1032015 . T C 2766 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.49;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2799,324,0 chrIV 1032120 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.5866;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.02;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2865,318,0 chrIV 1032141 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.09;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2596,282,0 chrIV 1032245 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2768,315,0 chrIV 1032399 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.16;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2328,258,0 chrIV 1032507 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2921,330,0 chrIV 1033091 . C G 3085 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.52;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3118,354,0 chrIV 1033297 . A C 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.731;QD=21.62;ReadPosRankSum=2.296;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2130,243,0 chrIV 1033380 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.87;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3389,378,0 chrIV 1033434 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.30;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3694,414,0 chrIV 1033467 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.69;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3232,372,0 chrIV 1033545 . A C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.00;FS=11.227;HaplotypeScore=4.2874;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.722;QD=24.38;ReadPosRankSum=2.416;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3632,417,0 chrIV 1033569 . G T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.94;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3711,408,0 chrIV 1033590 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.80;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3662,423,0 chrIV 1033712 . A C 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.8030;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.811;QD=22.04;ReadPosRankSum=2.425;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4453,494,0 chrIV 1033804 . T G 3957.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.87;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3957,450,0 chrIV 1033864 . A C 3916.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.51;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3916,447,0 chrIV 1033891 . G C 4092.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.86;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4092,459,0 chrIV 1034115 . A G 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.866;QD=21.97;ReadPosRankSum=1.699;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2318,267,0 chrIV 1034253 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.05;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2877,318,0 chrIV 1034257 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.75;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2834,312,0 chrIV 1034345 . A C 2652 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.26;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2685,300,0 chrIV 1034463 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.183;QD=22.96;ReadPosRankSum=1.619;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2857,327,0 chrIV 1034509 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.33;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2902,318,0 chrIV 1034538 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5873;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.41;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2299,270,0 chrIV 1034632 . C A 2822 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.65;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2855,309,0 chrIV 1034709 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=3.005;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=2.128;QD=21.85;ReadPosRankSum=2.404;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2393,276,0 chrIV 1034819 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.95;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2931,321,0 chrIV 1034859 . T C 2761 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.82;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2794,315,0 chrIV 1034889 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.84;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2471,285,0 chrIV 1034904 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.2129;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.23;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2913,312,0 chrIV 1035084 . A G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=99;Dels=0.00;FS=2.607;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.071;QD=21.81;ReadPosRankSum=2.929;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2192,243,0 chrIV 1035309 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.20;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3898,447,0 chrIV 1035606 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.16;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3768,405,0 chrIV 1035627 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=3.706;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.543;QD=20.98;ReadPosRankSum=1.691;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3588,408,0 chrIV 1035668 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.414;DP=193;Dels=0.00;FS=16.220;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.873;QD=20.25;ReadPosRankSum=3.295;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:4,187:193:99:3908,435,0 chrIV 1035697 . A C 4263.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.2382;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.32;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4263,477,0 chrIV 1035811 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1886;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=24.21;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3922,426,0 chrIV 1035838 . C A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=20.91;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3471,387,0 chrIV 1035840 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=20.28;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3386,384,0 chrIV 1035891 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.64;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2873,327,0 chrIV 1035916 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=3.730;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.203;QD=19.39;ReadPosRankSum=1.708;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2845,318,0 chrIV 1035987 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.661;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.219;QD=22.29;ReadPosRankSum=1.710;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3544,402,0 chrIV 1036063 . A C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.4941;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.97;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3560,408,0 chrIV 1036179 . A C 3101 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4057;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.69;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3134,354,0 chrIV 1036199 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=149;Dels=0.00;FS=3.573;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.615;QD=19.55;ReadPosRankSum=1.685;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2946,342,0 chrIV 1036257 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.3654;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.21;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3760,405,0 chrIV 1036312 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.45;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3461,372,0 chrIV 1036351 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.69;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2506,273,0 chrIV 1036384 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.25;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2923,315,0 chrIV 1036645 . C T 5135.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.2784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5135,567,0 chrIV 1036721 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.48;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3630,396,0 chrIV 1036768 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=203;Dels=0.00;FS=2.567;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.777;QD=21.73;ReadPosRankSum=2.926;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:4412,504,0 chrIV 1036886 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=18.8903;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.15;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3809,420,0 chrIV 1037061 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.99;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2972,321,0 chrIV 1037080 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.47;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2755,303,0 chrIV 1037098 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.11;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2478,279,0 chrIV 1037202 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.92;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3748,408,0 chrIV 1037205 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=172;Dels=0.00;FS=9.821;HaplotypeScore=1.9655;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.324;QD=21.44;ReadPosRankSum=2.794;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3687,420,0 chrIV 1037262 . A G 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=131;Dels=0.00;FS=3.023;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.211;QD=19.79;ReadPosRankSum=2.375;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2626,297,0 chrIV 1037338 . A G 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.195;QD=21.54;ReadPosRankSum=1.708;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3091,348,0 chrIV 1037347 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=1.111;QD=21.44;ReadPosRankSum=1.708;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3142,354,0 chrIV 1037511 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.05;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3099,333,0 chrIV 1037652 . C A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.88;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3606,390,0 chrIV 1037710 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.46;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3549,381,0 chrIV 1037923 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.59;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3058,345,0 chrIV 1037986 . T A 2594 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.80;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2627,291,0 chrIV 1037990 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.91;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2662,291,0 chrIV 1038058 . T C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=5.107;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=0.258;QD=19.94;ReadPosRankSum=1.695;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1947,216,0 chrIV 1038059 . T C 1886 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.06;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1919,216,0 chrIV 1038316 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=5.810;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.848;QD=22.90;ReadPosRankSum=1.708;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3262,372,0 chrIV 1038463 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.14;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4672,522,0 chrIV 1038620 . C T 4767.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;QD=23.72;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4767,519,0 chrIV 1038975 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.36;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2533,276,0 chrIV 1039125 . T C 2400 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.69;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2433,279,0 chrIV 1039132 . G A 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=4.133;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.115;QD=20.81;ReadPosRankSum=1.046;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2156,224,0 chrIV 1039385 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.39;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3425,402,0 chrIV 1040424 . T G 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.296;QD=20.07;ReadPosRankSum=1.711;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3292,378,0 chrIV 1040438 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.49;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3463,393,0 chrIV 1040471 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=193;Dels=0.00;FS=8.085;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.593;QD=19.76;ReadPosRankSum=2.424;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:3814,435,0 chrIV 1040522 . A G 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=213;Dels=0.00;FS=16.485;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.012;QD=21.61;ReadPosRankSum=3.419;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:4,208:213:99:4602,540,0 chrIV 1040595 . A C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.35;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3800,435,0 chrIV 1040643 . G A 4448.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.05;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4448,495,0 chrIV 1040684 . C G 4523.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.39;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4523,528,0 chrIV 1040862 . C A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.71;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4546,495,0 chrIV 1040939 . A G 4411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.695;QD=23.34;ReadPosRankSum=1.695;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4411,498,0 chrIV 1041086 . T C 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.001;DP=231;Dels=0.00;FS=10.766;HaplotypeScore=20.3416;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.290;QD=22.03;ReadPosRankSum=4.069;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:6,224:231:99:5090,582,0 chrIV 1041206 . T C 5092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=224;Dels=0.00;FS=10.449;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.955;QD=22.73;ReadPosRankSum=2.960;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:5092,579,0 chrIV 1041278 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.6521;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.49;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4449,489,0 chrIV 1041437 . T C 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=163;Dels=0.00;FS=6.017;HaplotypeScore=18.9243;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.706;QD=22.49;ReadPosRankSum=2.931;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,158:163:99:3666,423,0 chrIV 1041539 . C T 4573.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.10;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4573,504,0 chrIV 1041560 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.90;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4200,477,0 chrIV 1041581 . A T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.1557;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.11;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4138,465,0 chrIV 1041853 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.670;QD=21.00;ReadPosRankSum=1.682;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2910,327,0 chrIV 1041863 . T A 2705 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.74;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2738,309,0 chrIV 1042427 . G T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.71;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3420,366,0 chrIV 1042469 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.86;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3049,345,0 chrIV 1043001 . T C 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.472;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.470;QD=19.95;ReadPosRankSum=1.705;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2606,297,0 chrIV 1043012 . T C 2821 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.90;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2854,324,0 chrIV 1043069 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=135;Dels=0.01;FS=2.702;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.248;QD=17.46;ReadPosRankSum=2.395;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2390,276,0 chrIV 1043105 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=20.21;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2499,285,0 chrIV 1043112 . T C 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=128;Dels=0.00;FS=3.017;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=-0.283;QD=18.26;ReadPosRankSum=2.411;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2370,279,0 chrIV 1043299 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.75;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3278,360,0 chrIV 1043662 . A G 4554.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.12;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4554,516,0 chrIV 1043887 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.42;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4126,456,0 chrIV 1043992 . T A 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=189;Dels=0.00;FS=3.006;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.370;QD=23.51;ReadPosRankSum=2.424;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4443,483,0 chrIV 1044052 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=159;Dels=0.00;FS=8.200;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.095;QD=20.23;ReadPosRankSum=2.371;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,154:159:99:3249,369,0 chrIV 1044178 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=2.710;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.796;QD=22.13;ReadPosRankSum=2.356;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3496,399,0 chrIV 1044571 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.72;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3544,381,0 chrIV 1044635 . C A 2992 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.13;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3025,327,0 chrIV 1044751 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.86;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2896,318,0 chrIV 1045062 . A T 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=105;Dels=0.00;FS=3.051;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-2.142;QD=21.56;ReadPosRankSum=2.355;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2297,249,0 chrIV 1045115 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.85;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1700,189,0 chrIV 1045140 . G A 1575 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.98;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1608,171,0 chrIV 1045145 . T C 1565 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.56;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1598,174,0 chrIV 1045146 . T C 1569 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.37;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1602,180,0 chrIV 1045288 . T C 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=7.270;HaplotypeScore=6.6821;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.974;QD=19.89;ReadPosRankSum=1.624;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1326,153,0 chrIV 1045311 . G C 1069 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.17;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1102,132,0 chrIV 1045482 . C G 2145 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.94;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2178,249,0 chrIV 1045735 . A G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.095;QD=22.79;ReadPosRankSum=1.678;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2973,339,0 chrIV 1045804 . A G 2173 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.30;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2206,252,0 chrIV 1045807 . C G 2113 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.32;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,100:104:99:2146,243,0 chrIV 1045825 . T C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.315;QD=20.93;ReadPosRankSum=1.701;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2335,264,0 chrIV 1045889 . A G 2504 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.04;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2537,282,0 chrIV 1046027 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.882;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.270;QD=21.53;ReadPosRankSum=1.710;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3358,393,0 chrIV 1046552 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.2542;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.86;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3629,411,0 chrIV 1046579 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.84;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3117,345,0 chrIV 1046738 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.6395;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.75;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3216,351,0 chrIV 1046913 . G C 3198 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.6242;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.06;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3231,369,0 chrIV 1046963 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.54;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2873,318,0 chrIV 1047046 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.21;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4575,495,0 chrIV 1047131 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.3238;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3372,384,0 chrIV 1047260 . T C 2915 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.56;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2948,336,0 chrIV 1047315 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.92;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2920,315,0 chrIV 1047620 . C G 3951.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,172:177:99:3951,441,0 chrIV 1048121 . C T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=21.4103;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.21;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,205:210:99:4455,483,0 chrIV 1048263 . G C 2759 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.52;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2792,315,0 chrIV 1048271 . G A 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.086;QD=18.62;ReadPosRankSum=0.233;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2659,291,0 chrIV 1048403 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.9544;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.287;QD=22.87;ReadPosRankSum=0.357;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4574,522,0 chrIV 1049195 . T C 4685.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.6268;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.82;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4685,528,0 chrIV 1049210 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.9614;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.255;QD=19.17;ReadPosRankSum=1.670;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4314,486,0 chrIV 1049309 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.32;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4051,441,0 chrIV 1050120 . T A 2562 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.72;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2595,291,0 chrIV 1050175 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=139;Dels=0.00;FS=3.009;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.470;QD=20.91;ReadPosRankSum=2.414;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2940,339,0 chrIV 1050369 . A G 3093 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.18;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3126,354,0 chrIV 1050403 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.68;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2946,336,0 chrIV 1050442 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.18;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3615,396,0 chrIV 1050470 . C G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.15;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3723,423,0 chrIV 1050770 . T C 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=215;Dels=0.00;FS=18.353;HaplotypeScore=19.9160;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.574;QD=20.67;ReadPosRankSum=3.369;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:4,206:214:99:4444,498,0 chrIV 1050824 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.9122;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.02;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4557,504,0 chrIV 1051023 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.49;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:2743,291,0 chrIV 1051068 . G A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=21.1055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4208,459,0 chrIV 1051307 . T C 4517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.206;DP=200;Dels=0.00;FS=5.236;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.513;QD=22.59;ReadPosRankSum=3.109;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:4,195:200:99:4517,507,0 chrIV 1051452 . T C 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=225;Dels=0.00;FS=6.316;HaplotypeScore=13.1461;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.107;QD=20.64;ReadPosRankSum=2.362;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4644,537,0 chrIV 1051506 . T C 5790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=265;Dels=0.00;FS=3.388;HaplotypeScore=11.7715;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.168;QD=21.85;ReadPosRankSum=1.693;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:5790,660,0 chrIV 1051761 . G A 5083.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.79;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5083,555,0 chrIV 1052055 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.929;QD=21.44;ReadPosRankSum=1.682;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2992,339,0 chrIV 1052088 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8980;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.98;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3176,357,0 chrIV 1052574 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2631,300,0 chrIV 1052845 . A T 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=112;Dels=0.00;FS=3.037;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.033;QD=22.49;ReadPosRankSum=2.362;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2552,276,0 chrIV 1053051 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.20;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2342,255,0 chrIV 1053166 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.51;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2948,318,0 chrIV 1053228 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.76;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3632,387,0 chrIV 1053286 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.93;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4063,444,0 chrIV 1053397 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.01;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3675,393,0 chrIV 1053400 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.35;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3522,384,0 chrIV 1053698 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.66;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3204,348,0 chrIV 1053747 . A G 2721 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.30;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2754,312,0 chrIV 1053892 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.849;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.225;QD=23.26;ReadPosRankSum=1.653;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3080,351,0 chrIV 1053946 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.67;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2327,255,0 chrIV 1054109 . A G 2640 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.57;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2673,294,0 chrIV 1054225 . A G 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.454;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.495;QD=21.65;ReadPosRankSum=1.712;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3810,447,0 chrIV 1054326 . T A 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.529;QD=24.33;ReadPosRankSum=1.712;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4160,462,0 chrIV 1054524 . T C 3649.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.59;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3649,411,0 chrIV 1054527 . T G 3440.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.85;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3440,393,0 chrIV 1054654 . A G 2358 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.83;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2391,273,0 chrIV 1054662 . A C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.604;QD=21.90;ReadPosRankSum=2.402;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2311,261,0 chrIV 1054762 . A T 677 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=13.02;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:78:710,78,0 chrIV 1054827 . T G 885 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.0533;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=19.24;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:918,105,0 chrIV 1055184 . G A 94.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.739;DP=134;Dels=0.00;FS=2.630;HaplotypeScore=121.5610;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=2.077;QD=0.70;ReadPosRankSum=-5.365;SB=-8.026e+01 GT:AD:DP:GQ:PL 1/1:122,12:134:15:127,15,0 chrIV 1055203 . G C 2368 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.94;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2401,279,0 chrIV 1055277 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.1997;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.62;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4207,456,0 chrIV 1055562 . G A 6506.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=17.2679;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.83;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,258:262:99:6506,709,0 chrIV 1055646 . T C 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=251;Dels=0.00;FS=8.091;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.299;QD=17.63;ReadPosRankSum=3.412;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:4,244:251:99:4426,516,0 chrIV 1055660 . C A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=16.92;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4179,465,0 chrIV 1055678 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.5851;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=14.08;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:3507,414,0 chrIV 1055799 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.13;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4316,486,0 chrIV 1055826 . T G 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.8758;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.000;QD=22.33;ReadPosRankSum=1.667;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4802,549,0 chrIV 1055893 . A G 4830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.006;DP=224;Dels=0.00;FS=10.570;HaplotypeScore=18.1660;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-1.786;QD=21.56;ReadPosRankSum=4.102;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:6,217:224:99:4830,546,0 chrIV 1055999 . A C 3406.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=23.01;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3406,396,0 chrIV 1056000 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.994;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-0.211;QD=22.66;ReadPosRankSum=1.685;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3353,393,0 chrIV 1056052 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=125;Dels=0.00;FS=2.748;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;MQRankSum=-1.977;QD=17.25;ReadPosRankSum=2.351;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2189,252,0 chrIV 1056069 . T C 1332 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=13.45;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1365,159,0 chrIV 1056232 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=17.93;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2722,303,0 chrIV 1056242 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=18.01;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2554,282,0 chrIV 1056271 . T C 1176 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=100;Dels=0.00;FS=7.351;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;MQRankSum=-1.218;QD=11.76;ReadPosRankSum=3.321;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:5,95:100:99:1209,141,0 chrIV 1056272 . T C 1168 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.888;DP=99;Dels=0.00;FS=2.249;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;MQRankSum=0.827;QD=11.80;ReadPosRankSum=2.623;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1201,141,0 chrIV 1056276 . C T 1239 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=11.69;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1272,147,0 chrIV 1056383 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.01;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3411,381,0 chrIV 1056392 . G T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.64;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3397,369,0 chrIV 1056448 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.77;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2326,267,0 chrIV 1056586 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=24.9987;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.47;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4123,456,0 chrIV 1056633 . A T 4660.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.4140;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.02;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4660,510,0 chrIV 1056739 . G T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.11;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4369,480,0 chrIV 1057249 . G A 4863.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.41;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,213:217:99:4863,525,0 chrIV 1057267 . C A 4809.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.0438;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.37;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4809,531,0 chrIV 1057517 . G A 4419.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.43;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4419,483,0 chrIV 1057573 . T C 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=126;Dels=0.00;FS=7.087;HaplotypeScore=10.2162;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.439;QD=21.25;ReadPosRankSum=2.391;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2710,318,0 chrIV 1057601 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.84;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2894,309,0 chrIV 1057799 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.32;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1618,189,0 chrIV 1058554 . G C 4560.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.0846;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.61;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4560,519,0 chrIV 1058864 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3305,354,0 chrIV 1059094 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.74;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1920,216,0 chrIV 1059127 . G C 2158 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.80;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2191,246,0 chrIV 1059179 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=20.40;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1930,222,0 chrIV 1059192 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.27;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1860,213,0 chrIV 1059207 . T A 1852 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.13;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1885,204,0 chrIV 1059303 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=25.07;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2916,315,0 chrIV 1059313 . A G 2757 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.5036;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.36;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2790,315,0 chrIV 1059380 . C A 2066 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.81;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2099,237,0 chrIV 1059396 . G T 2449 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.07;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2482,270,0 chrIV 1059445 . A T 2920 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.71;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2953,321,0 chrIV 1059471 . A C 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.756;QD=20.52;ReadPosRankSum=1.708;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2988,336,0 chrIV 1059534 . T A 2781 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.61;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2814,318,0 chrIV 1059598 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=3.043;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.341;QD=20.09;ReadPosRankSum=1.706;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2705,312,0 chrIV 1059600 . T A 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.430;QD=21.49;ReadPosRankSum=2.304;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2934,315,0 chrIV 1059662 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.74;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2936,324,0 chrIV 1060010 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.745;QD=21.98;ReadPosRankSum=1.710;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3495,405,0 chrIV 1060178 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=150;Dels=0.00;FS=2.676;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.369;QD=22.59;ReadPosRankSum=2.351;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3388,390,0 chrIV 1060244 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2632,288,0 chrIV 1060416 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.17;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3224,357,0 chrIV 1060655 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3727,417,0 chrIV 1060748 . T C 3113 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3146,363,0 chrIV 1061165 . T A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.7507;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.58;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3725,411,0 chrIV 1061318 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.68;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1689,180,0 chrIV 1061346 . A T 1987 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.07;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2020,228,0 chrIV 1061357 . T C 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=3.768;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.520;QD=21.12;ReadPosRankSum=1.697;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2187,249,0 chrIV 1061386 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.65;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2408,276,0 chrIV 1061634 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1944;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.572;QD=24.10;ReadPosRankSum=2.370;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3759,423,0 chrIV 1061961 . C G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.38;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3635,429,0 chrIV 1062037 . C T 5516.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.52;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5516,603,0 chrIV 1062818 . G A 5301.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.73;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5301,570,0 chrIV 1062952 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.51;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3745,420,0 chrIV 1062981 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.63;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3592,411,0 chrIV 1063008 . G A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.78;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3461,387,0 chrIV 1063031 . C G 2819 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.19;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2852,330,0 chrIV 1063052 . T C 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=2.741;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.426;QD=18.65;ReadPosRankSum=2.416;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2774,321,0 chrIV 1063171 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=20.47;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4360,480,0 chrIV 1063173 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.14;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4309,480,0 chrIV 1064173 . C G 2379 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2412,276,0 chrIV 1064285 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.11;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3883,423,0 chrIV 1064446 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.043;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.065;QD=24.45;ReadPosRankSum=1.706;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3325,381,0 chrIV 1064864 . C T 5470.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.98;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5470,594,0 chrIV 1065022 . T C 4478.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.1917;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.64;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,211:217:99:4478,527,0 chrIV 1065082 . G T 3127 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.72;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3160,357,0 chrIV 1065162 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.69;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3721,423,0 chrIV 1065349 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2705,297,0 chrIV 1066006 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.88;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3295,369,0 chrIV 1066159 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=169;Dels=0.00;FS=2.981;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.400;QD=22.11;ReadPosRankSum=2.348;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3736,438,0 chrIV 1066189 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.38;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3356,375,0 chrIV 1066190 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.35;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3532,378,0 chrIV 1066368 . A G 3020 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.41;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3053,342,0 chrIV 1066372 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.72;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3017,333,0 chrIV 1066648 . T C 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.874;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.4406;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.682;QD=22.00;ReadPosRankSum=-0.026;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3179,341,0 chrIV 1066840 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3286,375,0 chrIV 1067499 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4069,441,0 chrIV 1067784 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3499,387,0 chrIV 1068162 . A T 3120 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.37;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3153,339,0 chrIV 1068192 . A G 2328 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.28;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2361,273,0 chrIV 1068363 . G T 1214 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.93;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1247,138,0 chrIV 1068460 . G A 127.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:18:160,18,0 chrIV 1068585 . A G 206.01 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.89;SB=-5.296e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:27:239,27,0 chrIV 1068605 . T C 315 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.50;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:348,39,0 chrIV 1069377 . T C 2685 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2718,309,0 chrIV 1069872 . T A 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.339;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.860;QD=23.45;ReadPosRankSum=1.709;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3541,384,0 chrIV 1069993 . A G 2645 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2678,309,0 chrIV 1070130 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.06;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2702,315,0 chrIV 1070142 . A G 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=115;Dels=0.00;FS=2.953;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.909;QD=21.04;ReadPosRankSum=2.407;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2453,276,0 chrIV 1070310 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.34;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2513,279,0 chrIV 1070601 . A G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=5.482;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.078;QD=22.70;ReadPosRankSum=1.667;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2439,276,0 chrIV 1071558 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=149;Dels=0.00;FS=14.140;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.061;QD=22.75;ReadPosRankSum=2.926;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3390,387,0 chrIV 1072765 . C T 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=120;Dels=0.00;FS=3.817;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.233;QD=21.62;ReadPosRankSum=-1.732;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2628,285,0 chrIV 1073154 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.14;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4096,459,0 chrIV 1073181 . C T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.13;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3784,420,0 chrIV 1073463 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=21.83;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3646,399,0 chrIV 1073479 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=21.11;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3525,405,0 chrIV 1073588 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=19.01;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1934,219,0 chrIV 1073617 . A G 1754 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=17.20;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1787,204,0 chrIV 1073642 . A G 2011 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5564;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=0;QD=16.90;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2044,234,0 chrIV 1073647 . A G 2013 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.5564;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=0.192;QD=15.98;ReadPosRankSum=1.237;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2046,231,0 chrIV 1073650 . T A 2073 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=127;Dels=0.00;FS=2.262;HaplotypeScore=4.8563;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;MQRankSum=-2.354;QD=16.32;ReadPosRankSum=2.326;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:4,123:127:99:2106,231,0 chrIV 1073654 . T C 2266 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.4751;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;MQRankSum=-1.436;QD=17.30;ReadPosRankSum=2.168;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2299,258,0 chrIV 1073936 . G A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.81;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3249,351,0 chrIV 1074070 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3497,390,0 chrIV 1074164 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3467,381,0 chrIV 1074407 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2785,312,0 chrIV 1074437 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.168;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.392;QD=22.47;ReadPosRankSum=1.701;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2550,285,0 chrIV 1074500 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.40;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2430,279,0 chrIV 1074515 . T C 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.274;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.034;QD=20.79;ReadPosRankSum=1.698;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2154,243,0 chrIV 1074527 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.98;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2515,270,0 chrIV 1074638 . A G 2192 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.32;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2225,252,0 chrIV 1074698 . T C 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.737;QD=22.06;ReadPosRankSum=1.695;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2107,237,0 chrIV 1074737 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.45;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1767,204,0 chrIV 1074754 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.26;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1786,201,0 chrIV 1074776 . T G 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=0.444;QD=18.79;ReadPosRankSum=2.408;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2288,267,0 chrIV 1074842 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.62;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3496,405,0 chrIV 1074890 . T C 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.533;QD=18.85;ReadPosRankSum=2.413;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2616,297,0 chrIV 1074897 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.68;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2480,273,0 chrIV 1074927 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.09;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2150,243,0 chrIV 1075079 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.99;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3840,420,0 chrIV 1075204 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.736;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.711;QD=21.36;ReadPosRankSum=1.710;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3397,387,0 chrIV 1075290 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.151;QD=21.86;ReadPosRankSum=1.687;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3389,381,0 chrIV 1075328 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.87;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3071,345,0 chrIV 1075347 . A G 2462 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=19.70;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2495,285,0 chrIV 1075360 . A T 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.180;QD=19.66;ReadPosRankSum=2.344;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2314,264,0 chrIV 1075419 . A G 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=2.788;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=0.423;QD=19.85;ReadPosRankSum=2.398;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1958,225,0 chrIV 1075428 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.00;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2217,249,0 chrIV 1075559 . C A 2206 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=17.79;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2239,246,0 chrIV 1075561 . G A 2170 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=19.04;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2203,243,0 chrIV 1075570 . T G 1610 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=16.77;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1643,195,0 chrIV 1075571 . C T 1524 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=0;QD=16.75;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1557,180,0 chrIV 1075592 . T A 997 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;QD=13.29;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1030,114,0 chrIV 1075605 . G A 935 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;QD=12.64;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:968,108,0 chrIV 1075606 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;QD=12.67;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:996,108,0 chrIV 1075626 . A G 998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;MQRankSum=-0.834;QD=12.32;ReadPosRankSum=1.689;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1031,120,0 chrIV 1075642 . A C 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;MQRankSum=1.622;QD=15.22;ReadPosRankSum=1.695;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1464,165,0 chrIV 1075710 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=16.62;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2560,291,0 chrIV 1075724 . T C 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=5.725;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=-0.805;QD=16.47;ReadPosRankSum=1.708;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2372,273,0 chrIV 1075739 . T C 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=11.883;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.750;QD=16.36;ReadPosRankSum=2.323;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2258,258,0 chrIV 1075812 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=22.97;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2169,240,0 chrIV 1075948 . G T 1592 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.41;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1625,180,0 chrIV 1076035 . A G 2603 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.88;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2636,294,0 chrIV 1076423 . G T 2798 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.91;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2831,309,0 chrIV 1076775 . A G 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=3.151;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.011;QD=22.35;ReadPosRankSum=1.710;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3532,393,0 chrIV 1076910 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3858,417,0 chrIV 1077082 . A G 2603 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.1163;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.66;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2636,300,0 chrIV 1077398 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.991;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=0.317;QD=20.07;ReadPosRankSum=1.708;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2883,327,0 chrIV 1077427 . T G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=7.469;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=0.156;QD=16.71;ReadPosRankSum=2.376;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2289,264,0 chrIV 1077428 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=17.15;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2382,261,0 chrIV 1077453 . T C 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-0.306;QD=13.96;ReadPosRankSum=1.681;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:1932,216,0 chrIV 1077466 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=14.55;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2027,219,0 chrIV 1077529 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.79;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3521,393,0 chrIV 1077787 . G T 2614 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.53;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2647,291,0 chrIV 1077851 . T C 2521 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.51;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2554,294,0 chrIV 1077994 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.06;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3274,360,0 chrIV 1078009 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.82;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3331,369,0 chrIV 1078458 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=192;Dels=0.00;FS=7.975;HaplotypeScore=15.2405;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.970;QD=21.46;ReadPosRankSum=3.350;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:4,187:192:99:4121,465,0 chrIV 1078734 . T A 1859 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.67;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1892,210,0 chrIV 1078766 . T C 1761 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.01;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1794,198,0 chrIV 1078767 . T C 1751 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.62;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1784,204,0 chrIV 1078855 . T G 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.675;QD=24.61;ReadPosRankSum=1.674;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1485,165,0 chrIV 1079059 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.74;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1789,195,0 chrIV 1079189 . G A 2553 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.55;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2586,282,0 chrIV 1079222 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=25.54;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3576,384,0 chrIV 1079258 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.81;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3762,423,0 chrIV 1079450 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.05;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4058,459,0 chrIV 1079465 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=188;Dels=0.00;FS=3.033;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.052;QD=21.26;ReadPosRankSum=2.397;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3997,453,0 chrIV 1079566 . G A 4703.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.67;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4703,501,0 chrIV 1079585 . G C 4181.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.0650;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.10;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4181,477,0 chrIV 1079792 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.9323;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.74;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4206,486,0 chrIV 1079855 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=178;Dels=0.00;FS=5.999;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.891;QD=21.26;ReadPosRankSum=2.960;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:3,172:178:99:3784,429,0 chrIV 1079976 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.97;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3434,387,0 chrIV 1079984 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.09;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3315,384,0 chrIV 1080788 . A G 3184 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=23.24;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3217,369,0 chrIV 1080869 . T A 1277 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.35;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1310,141,0 chrIV 1081015 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=13.03;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1245,138,0 chrIV 1081043 . G C 1110 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=13.70;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1143,135,0 chrIV 1081335 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.90;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4242,459,0 chrIV 1081779 . A G 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.852;QD=22.36;ReadPosRankSum=2.422;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4048,462,0 chrIV 1081972 . C T 3491.01 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=21.29;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3491,381,0 chrIV 1081973 . C T 3465.01 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=21.00;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3465,381,0 chrIV 1081977 . G A 3333.01 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=20.20;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3333,384,0 chrIV 1081999 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=19.59;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2893,321,0 chrIV 1082074 . G A 4410.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.62;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4410,498,0 chrIV 1082202 . C T 4858.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.2641;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=20.07;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:4858,537,0 chrIV 1082222 . C T 4377.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=18.47;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4377,477,0 chrIV 1082232 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.257;QD=17.65;ReadPosRankSum=2.946;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:4290,486,0 chrIV 1082379 . A G 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.4071;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.433;QD=19.43;ReadPosRankSum=1.674;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:4721,549,0 chrIV 1082404 . A G 4849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=246;Dels=0.00;FS=5.597;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.776;QD=19.71;ReadPosRankSum=2.914;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:4849,555,0 chrIV 1082474 . T G 4375.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.14;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4375,495,0 chrIV 1082631 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.74;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3866,420,0 chrIV 1082747 . C T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.48;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3795,408,0 chrIV 1083062 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.71;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3234,354,0 chrIV 1083088 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.03;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2611,300,0 chrIV 1083112 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.53;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2380,270,0 chrIV 1083252 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=18.0434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.46;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3798,438,0 chrIV 1083381 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2893;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.81;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3064,351,0 chrIV 1083596 . A G 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.303;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.912;QD=23.53;ReadPosRankSum=1.691;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4000,450,0 chrIV 1083624 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.99;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3695,417,0 chrIV 1083649 . A G 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.247;QD=21.32;ReadPosRankSum=1.713;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3901,450,0 chrIV 1083881 . G C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.68;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3264,363,0 chrIV 1083977 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.92;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3756,423,0 chrIV 1084057 . G T 3076 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.64;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3109,336,0 chrIV 1084062 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.06;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2968,330,0 chrIV 1084496 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.28;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2730,303,0 chrIV 1084839 . T C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=134;Dels=0.00;FS=12.237;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.902;QD=20.96;ReadPosRankSum=2.196;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2842,330,0 chrIV 1084860 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.82;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2531,291,0 chrIV 1084864 . G C 2446 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.73;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2479,282,0 chrIV 1085027 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.01;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3139,345,0 chrIV 1085054 . A C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=4.538;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.538;QD=21.60;ReadPosRankSum=1.684;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3208,372,0 chrIV 1085100 . T G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.730;QD=20.69;ReadPosRankSum=1.667;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3289,387,0 chrIV 1085571 . C G 3125 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.70;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3158,360,0 chrIV 1085592 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.24;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2947,330,0 chrIV 1086024 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3303,360,0 chrIV 1086102 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3882,414,0 chrIV 1086246 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=195;Dels=0.00;FS=9.150;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.126;QD=22.26;ReadPosRankSum=3.406;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:4,189:195:99:4340,504,0 chrIV 1086315 . T C 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.9262;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.425;QD=22.16;ReadPosRankSum=1.698;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4521,528,0 chrIV 1086618 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=168;Dels=0.00;FS=3.724;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.598;QD=21.27;ReadPosRankSum=1.711;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3573,417,0 chrIV 1086670 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.26;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3473,393,0 chrIV 1087085 . G C 3489.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=23.73;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3489,390,0 chrIV 1087203 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=19.67;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2472,279,0 chrIV 1087218 . T C 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.01;FS=3.522;HaplotypeScore=6.8680;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=0.783;QD=18.51;ReadPosRankSum=1.681;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2551,294,0 chrIV 1087263 . T C 2239 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=15.44;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2272,258,0 chrIV 1087264 . G A 2373 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=16.37;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2406,261,0 chrIV 1087267 . G A 2383 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=15.89;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2416,261,0 chrIV 1087307 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=6.234;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;MQRankSum=-2.365;QD=12.81;ReadPosRankSum=2.399;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:1916,228,0 chrIV 1087358 . A T 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=7.795;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-0.352;QD=18.12;ReadPosRankSum=2.421;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3132,351,0 chrIV 1087373 . A G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=176;Dels=0.00;FS=13.371;HaplotypeScore=14.3261;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-1.064;QD=17.73;ReadPosRankSum=2.960;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:3,171:176:99:3154,360,0 chrIV 1087412 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.71;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3666,429,0 chrIV 1087812 . G T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.0809;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=23.25;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3464,378,0 chrIV 1087970 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=115;Dels=0.00;FS=3.165;HaplotypeScore=9.4706;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.395;QD=22.29;ReadPosRankSum=1.702;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2596,294,0 chrIV 1088034 . T C 2934 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=23.66;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2967,333,0 chrIV 1088057 . A G 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-1.031;QD=20.65;ReadPosRankSum=1.873;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2325,264,0 chrIV 1088060 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=21.98;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2209,243,0 chrIV 1088411 . A G 3122 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.0619;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3155,351,0 chrIV 1088864 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=163;Dels=0.00;FS=5.233;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-1.217;QD=22.02;ReadPosRankSum=3.255;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3590,405,0 chrIV 1088898 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.41;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2441,270,0 chrIV 1088912 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.34;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2102,237,0 chrIV 1088958 . T C 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.438;DP=104;Dels=0.00;FS=11.203;HaplotypeScore=10.2726;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.556;QD=17.06;ReadPosRankSum=1.598;SB=-6.601e+01 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1807,172,0 chrIV 1089304 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.00;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1712,189,0 chrIV 1089625 . T C 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=172;Dels=0.00;FS=5.454;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.688;QD=20.52;ReadPosRankSum=2.959;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3529,408,0 chrIV 1089661 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.5167;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.563;QD=21.01;ReadPosRankSum=1.299;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3362,378,0 chrIV 1089672 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.71;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3202,351,0 chrIV 1089861 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.81;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2759,315,0 chrIV 1090082 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=18.19;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1979,216,0 chrIV 1090085 . T C 1865 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=17.27;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1898,213,0 chrIV 1090107 . C G 1893 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=85.2967;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=15.77;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1926,219,0 chrIV 1090122 . A C 152.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.956;DP=126;Dels=0.00;FS=0.998;HaplotypeScore=94.3622;MLEAC=1;MLEAF=0.500;MQ=38.13;MQ0=0;MQRankSum=0.978;QD=1.21;ReadPosRankSum=-5.213;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:109,17:126:36:182,0,36 chrIV 1090126 . A C 61.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DP=126;Dels=0.00;FS=2.269;HaplotypeScore=94.4854;MLEAC=1;MLEAF=0.500;MQ=37.84;MQ0=0;MQRankSum=-2.004;QD=0.48;ReadPosRankSum=6.195;SB=-1.184e+03 GT:AD:DP:GQ:PL 0/1:16,110:126:90:91,0,90 chrIV 1090133 . G A 348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6772;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=1.335;QD=2.64;ReadPosRankSum=1.309;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:42:381,42,0 chrIV 1090145 . A G 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=150;Dels=0.00;FS=2.977;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=0.320;QD=14.77;ReadPosRankSum=2.417;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2249,261,0 chrIV 1090269 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.18;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3326,363,0 chrIV 1090283 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=21.21;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3023,342,0 chrIV 1090578 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.2315;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.68;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2891,321,0 chrIV 1090692 . T C 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=138;Dels=0.00;FS=3.140;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.127;QD=21.99;ReadPosRankSum=1.707;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3068,351,0 chrIV 1090817 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.440;QD=23.71;ReadPosRankSum=1.705;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3044,339,0 chrIV 1091087 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.91;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3324,384,0 chrIV 1091102 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.73;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3316,378,0 chrIV 1091162 . G T 3203 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.77;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3236,357,0 chrIV 1091213 . T A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.90;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3504,384,0 chrIV 1091480 . C T 4454.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.75;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4454,492,0 chrIV 1091512 . C T 4414.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.8324;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.11;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4414,489,0 chrIV 1091591 . A G 3204 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.94;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3237,375,0 chrIV 1091826 . A C 2543 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.37;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2576,291,0 chrIV 1092239 . A G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=117;Dels=0.00;FS=10.708;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.905;QD=21.41;ReadPosRankSum=2.871;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2538,285,0 chrIV 1092561 . T C 2496 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2529,288,0 chrIV 1092723 . G C 2711 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.03;FS=0.000;HaplotypeScore=29.6835;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=18.70;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,136:141:99:2744,315,0 chrIV 1092764 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=125;Dels=0.00;FS=2.478;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.686;QD=21.98;ReadPosRankSum=2.944;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2781,318,0 chrIV 1092871 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.01;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2978,318,0 chrIV 1093030 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.66;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3354,372,0 chrIV 1093048 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.76;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3151,342,0 chrIV 1093368 . T G 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=119;Dels=0.00;FS=5.339;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.239;QD=21.15;ReadPosRankSum=2.924;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2550,291,0 chrIV 1093378 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.47;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2566,279,0 chrIV 1093591 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.55;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2241,243,0 chrIV 1093912 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.8682;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=21.97;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3317,375,0 chrIV 1094698 . G T 2239 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.57;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2272,243,0 chrIV 1095022 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2455,282,0 chrIV 1095082 . A G 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.922;QD=21.63;ReadPosRankSum=1.676;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2737,312,0 chrIV 1095230 . T G 2634 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=23.73;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2667,303,0 chrIV 1095364 . T A 650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.527;DP=68;Dels=0.01;FS=12.901;HaplotypeScore=7.6112;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.807;QD=9.56;ReadPosRankSum=2.474;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:4,63:67:43:683,43,0 chrIV 1095365 . A T 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;DP=69;Dels=0.03;FS=0.000;HaplotypeScore=7.6112;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-2.228;QD=10.35;ReadPosRankSum=2.168;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:747,101,0 chrIV 1095467 . T C 1499 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;QD=20.53;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1532,174,0 chrIV 1095515 . A G 129.13 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=3.31;SB=-1.341e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:18:162,18,0 chrIV 1095542 . T G 375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;MQRankSum=-1.019;QD=11.03;ReadPosRankSum=1.631;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:45:408,45,0 chrIV 1101698 . C G 41.08 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.44;MQ0=0;QD=1.33;SB=-4.009e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:9:73,9,0 chrIV 1101776 . G T 1908 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=22.19;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1941,210,0 chrIV 1101779 . T G 1846 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=21.22;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1879,213,0 chrIV 1101915 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=19.47;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:948,105,0 chrIV 1101927 . C T 793 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.82;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:90:826,90,0 chrIV 1101950 . A T 729 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.95;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:762,84,0 chrIV 1102096 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.46;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1066,117,0 chrIV 1102243 . A G 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=61;Dels=0.00;FS=7.171;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.182;QD=23.28;ReadPosRankSum=2.369;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1453,165,0 chrIV 1102257 . T C 1358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.732;QD=22.63;ReadPosRankSum=1.675;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1391,156,0 chrIV 1102285 . A T 1254 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.90;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1287,141,0 chrIV 1102315 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.77;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1695,186,0 chrIV 1102351 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.48;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1880,210,0 chrIV 1102483 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.29;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1885,207,0 chrIV 1102628 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.77;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2994,351,0 chrIV 1102674 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.00;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3336,375,0 chrIV 1102776 . T C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.478;QD=22.57;ReadPosRankSum=1.702;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2651,300,0 chrIV 1102795 . T G 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.265;QD=21.15;ReadPosRankSum=1.701;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2381,273,0 chrIV 1102879 . T A 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=5.816;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.442;QD=21.17;ReadPosRankSum=1.708;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3103,342,0 chrIV 1103339 . G T 2173 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2206,237,0 chrIV 1103455 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.26;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2708,303,0 chrIV 1103480 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.13;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2315,252,0 chrIV 1103488 . T A 2117 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.79;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2150,237,0 chrIV 1103531 . A G 1764 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.57;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1797,207,0 chrIV 1103592 . C G 2505 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2538,288,0 chrIV 1104014 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1964,213,0 chrIV 1104188 . G A 2302 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.35;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2335,252,0 chrIV 1104401 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.71;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3163,345,0 chrIV 1104470 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.88;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3075,342,0 chrIV 1104572 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.4274;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.430;QD=21.79;ReadPosRankSum=1.692;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3748,432,0 chrIV 1104611 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=158;Dels=0.00;FS=5.969;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.019;QD=20.88;ReadPosRankSum=2.917;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3299,356,0 chrIV 1104929 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9174;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.00;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2364,261,0 chrIV 1104966 . T G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=121;Dels=0.00;FS=3.027;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.830;QD=20.88;ReadPosRankSum=2.409;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2560,300,0 chrIV 1105249 . A T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6058;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.12;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3537,396,0 chrIV 1105534 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.65;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3008,327,0 chrIV 1105561 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.23;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2611,300,0 chrIV 1105660 . T C 2396 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.19;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2429,279,0 chrIV 1105780 . G A 2625 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.08;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2658,282,0 chrIV 1105872 . C A 1107 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.76;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1140,126,0 chrIV 1106241 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.384;QD=23.59;ReadPosRankSum=1.691;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4011,456,0 chrIV 1106284 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.48;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3501,384,0 chrIV 1106292 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.74;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3251,381,0 chrIV 1106617 . C G 2280 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.80;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2313,264,0 chrIV 1106884 . T C 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.637;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.603;QD=22.39;ReadPosRankSum=1.655;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3033,351,0 chrIV 1107089 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.75;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2149,240,0 chrIV 1107114 . T C 2302 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.93;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2335,255,0 chrIV 1107118 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=20.99;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2510,273,0 chrIV 1107187 . A G 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=137;Dels=0.00;FS=2.764;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.906;QD=17.38;ReadPosRankSum=2.396;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2414,282,0 chrIV 1107191 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.7981;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.27;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2596,285,0 chrIV 1107262 . T C 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.222;QD=21.19;ReadPosRankSum=1.696;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2046,240,0 chrIV 1107444 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.38;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2786,312,0 chrIV 1107470 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.01;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2740,297,0 chrIV 1107910 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=224;Dels=0.00;FS=6.081;HaplotypeScore=15.0588;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.338;QD=21.85;ReadPosRankSum=2.932;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:3,217:224:99:4895,570,0 chrIV 1107957 . G T 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.0343;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.655;QD=21.57;ReadPosRankSum=1.315;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4854,546,0 chrIV 1108114 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.81;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3559,405,0 chrIV 1108150 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.61;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3976,447,0 chrIV 1108456 . G T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.02;FS=0.000;HaplotypeScore=14.7501;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.98;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3781,411,0 chrIV 1108484 . A G 3209 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.5806;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.69;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3242,381,0 chrIV 1108508 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=149.4799;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-1.443;QD=18.10;ReadPosRankSum=1.694;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3276,369,0 chrIV 1108662 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.09;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3333,366,0 chrIV 1108696 . C G 3966.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8489;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.61;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3966,444,0 chrIV 1109358 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=3.941;HaplotypeScore=16.9538;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.111;QD=21.36;ReadPosRankSum=1.712;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3652,420,0 chrIV 1109568 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.85;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4318,498,0 chrIV 1109736 . A C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.20;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3396,381,0 chrIV 1109826 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.60;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2443,276,0 chrIV 1109835 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.92;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2356,261,0 chrIV 1109890 . T G 1305 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.39;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1338,150,0 chrIV 1110170 . C G 207.01 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.25;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:27:240,27,0 chrIV 1110215 . T A 244 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.43;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:277,30,0 chrIV 1110277 . G T 241 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-2.900e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:274,30,0 chrIV 1110323 . T C 512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.576;QD=23.27;ReadPosRankSum=1.576;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:63:545,63,0 chrIV 1110458 . C A 2109 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2142,252,0 chrIV 1110571 . C A 1956 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.74;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1989,225,0 chrIV 1111002 . G A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.3536;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.99;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3793,429,0 chrIV 1111210 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=172;Dels=0.00;FS=2.767;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.122;QD=19.82;ReadPosRankSum=2.406;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3409,396,0 chrIV 1111414 . T A 3179 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=15.3724;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.55;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3212,363,0 chrIV 1111575 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.80;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2570,282,0 chrIV 1111626 . A C 2002 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.25;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2035,234,0 chrIV 1111638 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.85;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1993,225,0 chrIV 1111780 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.11;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2001,222,0 chrIV 1111885 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.51;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2014,225,0 chrIV 1111953 . G T 1555 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=16.72;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1588,168,0 chrIV 1112793 . A G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=134;Dels=0.00;FS=5.494;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.060;QD=19.57;ReadPosRankSum=2.873;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2655,312,0 chrIV 1113053 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.028;DP=111;Dels=0.00;FS=2.864;HaplotypeScore=14.1506;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.676;QD=21.41;ReadPosRankSum=2.317;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2410,276,0 chrIV 1113116 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.57;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4525,489,0 chrIV 1113224 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.08;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3877,429,0 chrIV 1113566 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.59;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3411,375,0 chrIV 1113753 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=3.456;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.317;QD=20.65;ReadPosRankSum=1.711;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3387,384,0 chrIV 1113766 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.367;QD=20.33;ReadPosRankSum=1.690;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3355,387,0 chrIV 1113867 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.90;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3363,366,0 chrIV 1113875 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.262;QD=18.79;ReadPosRankSum=1.711;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3134,354,0 chrIV 1113939 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.36;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3632,399,0 chrIV 1113990 . C A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.24;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3719,411,0 chrIV 1114189 . T C 2986 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3019,348,0 chrIV 1114225 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2792,312,0 chrIV 1114859 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.44;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3130,336,0 chrIV 1115198 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.033;QD=21.12;ReadPosRankSum=1.702;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2483,282,0 chrIV 1115651 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.5060;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.26;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3163,342,0 chrIV 1115900 . G C 2992 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.33;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3025,351,0 chrIV 1116554 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.962;QD=18.82;ReadPosRankSum=1.681;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2611,300,0 chrIV 1116571 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.46;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2505,285,0 chrIV 1116662 . A G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.0272;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.845;QD=21.01;ReadPosRankSum=1.703;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2617,300,0 chrIV 1116737 . T G 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=3.908;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.704;QD=18.59;ReadPosRankSum=1.694;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1743,198,0 chrIV 1116901 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=2.642;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.159;QD=18.51;ReadPosRankSum=2.386;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2180,246,0 chrIV 1116905 . A G 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=121;Dels=0.00;FS=9.399;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-0.215;QD=17.04;ReadPosRankSum=2.409;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2095,240,0 chrIV 1117013 . G A 4366.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4366,474,0 chrIV 1117890 . G T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.35;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3573,393,0 chrIV 1118130 . A G 2625 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.52;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2658,303,0 chrIV 1118280 . C T 2067 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2100,228,0 chrIV 1118402 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.60;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2722,297,0 chrIV 1118418 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.95;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2557,270,0 chrIV 1118556 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.54;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3989,456,0 chrIV 1118674 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.44;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4359,486,0 chrIV 1118730 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.62;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3981,435,0 chrIV 1118901 . G A 6108.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.1298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:6108,669,0 chrIV 1118976 . T C 5706.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.10;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5706,648,0 chrIV 1119216 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=18.4481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:4010,438,0 chrIV 1119792 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.93;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3463,384,0 chrIV 1119804 . G T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.81;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3381,375,0 chrIV 1119862 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=4.243;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.897;QD=23.36;ReadPosRankSum=1.712;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3971,447,0 chrIV 1119888 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.96;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3623,417,0 chrIV 1119900 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.38;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3671,414,0 chrIV 1120129 . A G 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.672;QD=21.42;ReadPosRankSum=2.336;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2839,321,0 chrIV 1120348 . G A 877 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.70;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:910,99,0 chrIV 1120363 . A T 762 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.58;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:795,84,0 chrIV 1120367 . T C 727 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.03;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:760,90,0 chrIV 1120689 . T C 1808 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.11;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1841,207,0 chrIV 1120855 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.97;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2404,273,0 chrIV 1120915 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.70;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1333,153,0 chrIV 1120975 . T C 2468 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.84;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2501,288,0 chrIV 1121002 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2722,303,0 chrIV 1121135 . T G 2924 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.17;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2957,330,0 chrIV 1121173 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.69;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3218,348,0 chrIV 1121716 . T C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.636;DP=86;Dels=0.00;FS=5.996;HaplotypeScore=7.8545;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.200;QD=19.63;ReadPosRankSum=2.848;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1721,201,0 chrIV 1121893 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.77;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2583,282,0 chrIV 1122006 . T C 2545 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.14;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2578,297,0 chrIV 1122184 . G T 2943 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.9722;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.12;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2976,324,0 chrIV 1122325 . T A 3108 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3141,354,0 chrIV 1122542 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=179;Dels=0.00;FS=5.261;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.051;QD=22.92;ReadPosRankSum=2.882;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4102,456,0 chrIV 1122913 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.57;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3473,402,0 chrIV 1122952 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.483;QD=21.96;ReadPosRankSum=1.707;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3085,348,0 chrIV 1123442 . G C 3215.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.73;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3249,369,0 chrIV 1123640 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4255,486,0 chrIV 1123824 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.26;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4763,513,0 chrIV 1123975 . G A 4865.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.42;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4865,549,0 chrIV 1124047 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=163;Dels=0.00;FS=6.891;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.349;QD=22.63;ReadPosRankSum=2.419;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3688,414,0 chrIV 1124083 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.31;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3681,405,0 chrIV 1124284 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.70;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3233,369,0 chrIV 1124329 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=3.540;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.306;QD=20.69;ReadPosRankSum=1.675;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2599,294,0 chrIV 1124465 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2843,315,0 chrIV 1124620 . A T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.75;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4455,498,0 chrIV 1125071 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=20.99;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2405,276,0 chrIV 1125098 . A T 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.639;DP=114;Dels=0.00;FS=12.091;HaplotypeScore=5.8002;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=-1.910;QD=16.02;ReadPosRankSum=3.515;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:5,109:114:99:1859,210,0 chrIV 1125103 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=17.34;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2027,228,0 chrIV 1125125 . C A 1835 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=15.96;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1868,207,0 chrIV 1125139 . T C 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;MQRankSum=-0.064;QD=13.53;ReadPosRankSum=1.700;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1494,168,0 chrIV 1125228 . T G 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.591;QD=22.94;ReadPosRankSum=1.692;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3969,462,0 chrIV 1125429 . G C 5766.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.8841;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.34;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:5766,648,0 chrIV 1126043 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6921;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.64;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3354,363,0 chrIV 1126090 . G C 2311 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.91;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2344,276,0 chrIV 1126095 . T C 2433 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.57;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2466,279,0 chrIV 1126171 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=6.629;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.159;QD=18.44;ReadPosRankSum=2.415;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2633,309,0 chrIV 1126266 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.52;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2690,294,0 chrIV 1126318 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=21.52;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2615,288,0 chrIV 1126330 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=3.464;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=-0.489;QD=18.08;ReadPosRankSum=1.573;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2437,276,0 chrIV 1126356 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=15.46;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2120,231,0 chrIV 1126365 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=14.09;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2006,219,0 chrIV 1126399 . G T 2286 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=15.34;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2319,261,0 chrIV 1126486 . A C 4076.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.80;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4076,468,0 chrIV 1126843 . A G 2798 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.86;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2831,330,0 chrIV 1126921 . A G 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.030;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.604;QD=22.09;ReadPosRankSum=1.705;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2882,327,0 chrIV 1127082 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=3.108;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.058;QD=22.67;ReadPosRankSum=1.713;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4080,462,0 chrIV 1127449 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.91;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4141,465,0 chrIV 1127544 . C G 4823.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.6307;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.06;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4823,549,0 chrIV 1127676 . G C 5614.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.5980;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.37;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:5614,618,0 chrIV 1127756 . T C 6169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=275;Dels=0.00;FS=2.930;HaplotypeScore=20.6671;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.326;QD=22.43;ReadPosRankSum=2.414;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:2,273:275:99:6169,705,0 chrIV 1127792 . A G 6194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=283;Dels=0.00;FS=10.659;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.655;QD=21.89;ReadPosRankSum=2.932;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:3,279:283:99:6194,696,0 chrIV 1127809 . G A 5791.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.02;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,259:263:99:5791,636,0 chrIV 1127836 . G A 5283.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.30;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5283,579,0 chrIV 1127919 . T C 6398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=283;Dels=0.00;FS=3.215;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.104;QD=22.61;ReadPosRankSum=1.695;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:1,282:283:99:6398,738,0 chrIV 1128039 . G A 5677.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.92;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5677,621,0 chrIV 1128060 . G A 5856.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.06;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:5856,657,0 chrIV 1128108 . G A 5058.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=19.68;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,253:257:99:5058,567,0 chrIV 1128135 . G A 4906.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.1636;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.20;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4906,528,0 chrIV 1128763 . T C 5325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=233;Dels=0.00;FS=5.886;HaplotypeScore=16.8250;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.096;QD=22.85;ReadPosRankSum=2.943;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:3,227:233:99:5325,594,0 chrIV 1128837 . A G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.034;QD=18.61;ReadPosRankSum=1.709;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2899,336,0 chrIV 1129980 . A G 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=135;Dels=0.00;FS=5.996;HaplotypeScore=7.2933;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.261;QD=22.65;ReadPosRankSum=2.903;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3091,345,0 chrIV 1130680 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.46;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1977,216,0 chrIV 1131956 . A G 2888 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2921,330,0 chrIV 1132014 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.66;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4636,516,0 chrIV 1132218 . C G 3893.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.16;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3893,447,0 chrIV 1132333 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3846;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.551;QD=22.95;ReadPosRankSum=1.664;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3534,399,0 chrIV 1132452 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.269;QD=22.65;ReadPosRankSum=1.659;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3249,363,0 chrIV 1132581 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.110;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.347;QD=21.64;ReadPosRankSum=1.813;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2586,275,0 chrIV 1132828 . C A 2969 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.56;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3002,324,0 chrIV 1132989 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3259,369,0 chrIV 1133213 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2985,324,0 chrIV 1133503 . A T 4487.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.87;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4487,498,0 chrIV 1133759 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=3.199;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.669;QD=21.95;ReadPosRankSum=0.829;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3643,396,0 chrIV 1133767 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4745;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.63;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3418,393,0 chrIV 1133923 . G C 3873.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.01;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3873,453,0 chrIV 1134931 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.94;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3372,363,0 chrIV 1135187 . C G 4702.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.63;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4702,534,0 chrIV 1135217 . G A 4908.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.04;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4908,528,0 chrIV 1135243 . C A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.55;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3638,393,0 chrIV 1135287 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=3.757;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.739;QD=20.46;ReadPosRankSum=1.712;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3519,390,0 chrIV 1135309 . C G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.41;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,153:158:99:3257,381,0 chrIV 1136116 . G A 4627.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.61;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4627,507,0 chrIV 1136153 . A C 4792.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.61;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4792,543,0 chrIV 1136171 . C G 4823.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.92;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4823,555,0 chrIV 1136363 . A G 4781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=217;Dels=0.00;FS=2.830;HaplotypeScore=9.4692;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.465;QD=22.03;ReadPosRankSum=2.393;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4781,546,0 chrIV 1136387 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.442;QD=23.39;ReadPosRankSum=1.693;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4210,477,0 chrIV 1136470 . T A 2321 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.29;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2354,255,0 chrIV 1136725 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3365,357,0 chrIV 1136891 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.092;QD=22.85;ReadPosRankSum=1.609;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3861,444,0 chrIV 1137089 . A G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.792;QD=22.35;ReadPosRankSum=1.683;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3185,363,0 chrIV 1137245 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.19;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4305,468,0 chrIV 1137328 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.83;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4098,468,0 chrIV 1137538 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.21;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3478,378,0 chrIV 1137597 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.650;QD=23.11;ReadPosRankSum=1.684;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3397,381,0 chrIV 1137630 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.609;QD=22.34;ReadPosRankSum=1.709;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3307,381,0 chrIV 1137761 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3935,426,0 chrIV 1137881 . A T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.0755;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.82;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3907,429,0 chrIV 1138358 . T C 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=179;Dels=0.00;FS=8.382;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.594;QD=24.26;ReadPosRankSum=3.371;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:4,174:179:99:4343,492,0 chrIV 1138406 . A G 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=3.144;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.079;QD=22.91;ReadPosRankSum=1.653;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3103,351,0 chrIV 1138987 . A C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.1818;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.08;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3372,390,0 chrIV 1139004 . C G 2938 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.40;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2971,336,0 chrIV 1139381 . T A 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.89;ReadPosRankSum=1.685;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3124,369,0 chrIV 1139520 . T C 4788.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.7527;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.06;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4788,543,0 chrIV 1139804 . A G 4727.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.75;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4727,534,0 chrIV 1139987 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=162;Dels=0.00;FS=2.897;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.053;QD=21.81;ReadPosRankSum=2.389;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3534,399,0 chrIV 1140038 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=4.344;HaplotypeScore=6.4901;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.075;QD=20.65;ReadPosRankSum=1.712;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3613,420,0 chrIV 1140050 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.77;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3427,399,0 chrIV 1140095 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=182;Dels=0.00;FS=11.234;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.694;QD=22.24;ReadPosRankSum=2.939;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4047,459,0 chrIV 1140165 . T C 4683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=191;Dels=0.00;FS=2.791;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.097;QD=24.52;ReadPosRankSum=2.424;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:4683,528,0 chrIV 1141284 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.86;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1997,216,0 chrIV 1141710 . A G 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=141;Dels=0.00;FS=3.235;HaplotypeScore=17.1242;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.707;QD=21.43;ReadPosRankSum=1.657;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3055,342,0 chrIV 1142883 . A G 2474 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.70;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2507,291,0 chrIV 1143495 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=6.236;HaplotypeScore=16.1427;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.395;QD=21.88;ReadPosRankSum=2.423;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4047,459,0 chrIV 1143696 . T C 4964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=219;Dels=0.00;FS=2.899;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.458;QD=22.67;ReadPosRankSum=2.382;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4964,567,0 chrIV 1143750 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.520;QD=21.15;ReadPosRankSum=1.716;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4527,516,0 chrIV 1143783 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.77;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3875,441,0 chrIV 1143822 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.15;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3965,444,0 chrIV 1143838 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.77;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4326,468,0 chrIV 1143894 . A C 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.339;QD=20.51;ReadPosRankSum=1.714;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:3917,456,0 chrIV 1143943 . A T 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.695;QD=22.48;ReadPosRankSum=1.657;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4158,450,0 chrIV 1144083 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.73;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2480,288,0 chrIV 1144305 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.21;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2981,330,0 chrIV 1144484 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.11;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4340,465,0 chrIV 1145144 . A G 2932 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.05;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2965,339,0 chrIV 1145628 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.60;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3985,429,0 chrIV 1146376 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.77;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4158,471,0 chrIV 1146468 . T C 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=18.1348;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=0.137;QD=13.41;ReadPosRankSum=1.707;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,138:140:99:1911,222,0 chrIV 1146477 . A G 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.477;DP=138;Dels=0.00;FS=5.064;HaplotypeScore=13.2397;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=-1.130;QD=12.15;ReadPosRankSum=1.707;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1710,175,0 chrIV 1146636 . G T 3072 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.10;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3105,336,0 chrIV 1146894 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=4.798;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.732;QD=20.90;ReadPosRankSum=1.710;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3344,381,0 chrIV 1147285 . A T 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=-0.520;QD=17.14;ReadPosRankSum=1.689;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1404,156,0 chrIV 1147320 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.00;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2025,222,0 chrIV 1147489 . T A 2565 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.97;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2598,282,0 chrIV 1147580 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.0392;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.88;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3935,438,0 chrIV 1147682 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.03;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4230,474,0 chrIV 1147805 . T G 5778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=249;Dels=0.00;FS=5.230;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.291;QD=23.20;ReadPosRankSum=2.971;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:3,242:249:99:5778,654,0 chrIV 1147847 . C A 6013.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.4654;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.96;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6013,672,0 chrIV 1147937 . G A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.8574;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.52;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4946,537,0 chrIV 1147951 . T C 4681.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.35;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4681,534,0 chrIV 1147978 . C T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.7293;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.82;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4817,546,0 chrIV 1148075 . C T 4964.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.46;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4964,558,0 chrIV 1148435 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.4451;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.07;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3035,348,0 chrIV 1148558 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.96;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3202,360,0 chrIV 1148573 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.64;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2955,321,0 chrIV 1148689 . A G 5280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=226;Dels=0.00;FS=6.004;HaplotypeScore=10.7629;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.969;QD=23.36;ReadPosRankSum=2.951;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:3,222:226:99:5280,603,0 chrIV 1148726 . C T 5422.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.65;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5422,591,0 chrIV 1148912 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=236;Dels=0.00;FS=3.104;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.140;QD=21.39;ReadPosRankSum=1.629;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5047,570,0 chrIV 1149107 . A G 5193.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.2976;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.73;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5193,576,0 chrIV 1149128 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.84;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4673,513,0 chrIV 1149251 . T C 4984.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.76;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4984,564,0 chrIV 1149368 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.26;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3421,366,0 chrIV 1149478 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.46;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2630,294,0 chrIV 1149488 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=22.16;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2559,288,0 chrIV 1149565 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.46;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2436,273,0 chrIV 1149761 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=21.99;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2826,315,0 chrIV 1149762 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=22.20;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2874,318,0 chrIV 1149773 . C G 2750 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.37;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2783,321,0 chrIV 1150131 . A G 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=133;Dels=0.00;FS=3.044;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.441;QD=19.47;ReadPosRankSum=1.706;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2623,300,0 chrIV 1150196 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.545;QD=17.23;ReadPosRankSum=2.370;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2170,243,0 chrIV 1150248 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3114,345,0 chrIV 1150352 . G C 3721.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.14;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3721,420,0 chrIV 1150413 . T A 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.711;DP=136;Dels=0.00;FS=2.586;HaplotypeScore=12.1029;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=1.096;QD=21.75;ReadPosRankSum=2.919;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2991,333,0 chrIV 1150452 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.066;QD=22.05;ReadPosRankSum=2.337;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2921,330,0 chrIV 1150562 . C A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.07;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4645,501,0 chrIV 1150605 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.8909;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.22;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3844,447,0 chrIV 1150620 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=22.29;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3655,405,0 chrIV 1150675 . T C 2709 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.49;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2742,309,0 chrIV 1150691 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.812;QD=21.21;ReadPosRankSum=1.708;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3087,360,0 chrIV 1150776 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=3.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.511;QD=22.58;ReadPosRankSum=2.419;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3636,423,0 chrIV 1150827 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=6.0352;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.402;QD=17.76;ReadPosRankSum=2.917;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2431,279,0 chrIV 1150828 . G A 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=134;Dels=0.01;FS=3.037;HaplotypeScore=5.3466;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.582;QD=18.30;ReadPosRankSum=0.675;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2485,279,0 chrIV 1150963 . T C 2158 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=22.25;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2191,249,0 chrIV 1150964 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=23.20;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2260,243,0 chrIV 1151003 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.09;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1678,189,0 chrIV 1151034 . A G 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.573;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.1543;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-2.319;QD=17.58;ReadPosRankSum=4.573;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:8,63:71:99:1281,147,0 chrIV 1151056 . A G 1005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.227;DP=85;Dels=0.00;FS=46.032;HaplotypeScore=13.8814;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;MQRankSum=3.812;QD=11.82;ReadPosRankSum=6.423;SB=-8.500e+01 GT:AD:DP:GQ:PL 1/1:31,54:85:99:1038,120,0 chrIV 1151094 . C T 670 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=14.26;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:75:703,75,0 chrIV 1151115 . T G 292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=26;Dels=0.00;FS=23.062;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=1;MQRankSum=0.611;QD=11.23;ReadPosRankSum=2.706;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:4,21:26:36:325,36,0 chrIV 1151193 . G C 214.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DP=45;Dels=0.00;FS=20.358;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=2;MQRankSum=-0.012;QD=4.76;ReadPosRankSum=1.145;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:19,26:45:99:244,0,286 chrIV 1151205 . A G 381.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DP=57;Dels=0.00;FS=35.884;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=2;MQRankSum=0.009;QD=6.68;ReadPosRankSum=1.628;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:32,24:57:99:411,0,430 chrIV 1151234 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=1;QD=19.50;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1515,174,0 chrIV 1151283 . T C 234.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.855;DP=87;Dels=0.00;FS=14.608;HaplotypeScore=4.9785;MLEAC=1;MLEAF=0.500;MQ=32.22;MQ0=2;MQRankSum=-2.715;QD=2.69;ReadPosRankSum=-0.066;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:66,21:87:99:264,0,1328 chrIV 1151301 . T C 113.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.06;MQ0=2;MQRankSum=-1.696;QD=1.57;ReadPosRankSum=2.064;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:58,13:72:99:143,0,1138 chrIV 1151306 . A G 131.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.78;MQ0=2;MQRankSum=-1.386;QD=1.96;ReadPosRankSum=0.845;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:54,13:67:99:161,0,973 chrIV 1151324 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=2;QD=21.71;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1140,123,0 chrIV 1151362 . A T 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=22;Dels=0.00;FS=13.778;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=2;MQRankSum=0.041;QD=4.41;ReadPosRankSum=2.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,6:22:99:127,0,199 chrIV 1151369 . A G 114.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;DP=17;Dels=0.00;FS=9.859;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=2;MQRankSum=-0.648;QD=6.71;ReadPosRankSum=-2.534;SB=-1.015e+02 GT:AD:DP:GQ:PL 0/1:6,11:17:99:144,0,131 chrIV 1151370 . T A 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DP=17;Dels=0.00;FS=9.859;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=2;MQRankSum=1.120;QD=6.47;ReadPosRankSum=2.416;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,6:17:99:140,0,130 chrIV 1151623 . C A 32.97 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=0.89;SB=-5.298e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:9:65,9,0 chrIV 1151759 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=22.45;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2862,327,0 chrIV 1151799 . T C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-1.747;QD=21.80;ReadPosRankSum=2.372;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2780,321,0 chrIV 1151893 . T G 2978 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.91;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3011,345,0 chrIV 1152100 . T G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.677;DP=175;Dels=0.00;FS=7.841;HaplotypeScore=13.5235;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.115;QD=21.97;ReadPosRankSum=2.817;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:5,170:175:99:3844,444,0 chrIV 1152705 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.89;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4159,459,0 chrIV 1153009 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.61;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3329,369,0 chrIV 1153171 . G T 3007 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.3462;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.68;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3040,339,0 chrIV 1153177 . G C 2727 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3565;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.20;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2760,327,0 chrIV 1153303 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3063,336,0 chrIV 1153699 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.34;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2540,270,0 chrIV 1153930 . A G 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.657;QD=21.60;ReadPosRankSum=1.673;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1286,147,0 chrIV 1153966 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.26;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1096,123,0 chrIV 1154160 . A G 1037 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.08;MQ0=14;QD=15.48;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1070,126,0 chrIV 1154321 . C T 2629 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=36;QD=15.74;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2662,282,0 chrIV 1154405 . A G 1926 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=21.54;MQ0=92;MQRankSum=-1.711;QD=10.03;ReadPosRankSum=2.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:1959,216,0 chrIV 1154411 . G A 2119 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.252;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=84;MQRankSum=1.286;QD=11.45;ReadPosRankSum=-0.600;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:41,143:185:99:2152,228,0 chrIV 1154412 . A T 1927 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.38;MQ0=81;MQRankSum=1.595;QD=10.59;ReadPosRankSum=-0.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:40,142:182:99:1960,228,0 chrIV 1154468 . A G 1951 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=50;MQRankSum=-0.129;QD=12.59;ReadPosRankSum=2.239;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:1984,228,0 chrIV 1154507 . C G 738.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.535;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=1;MLEAF=0.500;MQ=19.34;MQ0=67;MQRankSum=3.832;QD=4.42;ReadPosRankSum=-1.510;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,64:167:99:768,0,249 chrIV 1154509 . A T 685.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=1;MLEAF=0.500;MQ=18.88;MQ0=66;MQRankSum=2.835;QD=4.23;ReadPosRankSum=-1.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,59:162:99:715,0,276 chrIV 1154513 . A G 605.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.251;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=18.49;MQ0=67;MQRankSum=1.783;QD=3.81;ReadPosRankSum=-0.890;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,53:159:99:635,0,296 chrIV 1154517 . G C 578.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.515;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.82;MQ0=68;MQRankSum=2.346;QD=3.73;ReadPosRankSum=-1.963;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,47:155:99:608,0,280 chrIV 1154518 . C A 610.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.915;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.71;MQ0=70;MQRankSum=1.827;QD=3.89;ReadPosRankSum=-1.844;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,47:157:99:640,0,293 chrIV 1154523 . G T 433.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.596;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.78;MQ0=76;MQRankSum=2.092;QD=2.76;ReadPosRankSum=-1.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,42:157:99:463,0,298 chrIV 1154524 . T G 417.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.890;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.72;MQ0=77;MQRankSum=1.299;QD=2.64;ReadPosRankSum=-1.450;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,41:158:99:447,0,307 chrIV 1154525 . A G 418.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.269;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.67;MQ0=78;MQRankSum=1.403;QD=2.63;ReadPosRankSum=-1.818;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,41:159:99:448,0,315 chrIV 1154528 . A G 444.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.45;MQ0=84;MQRankSum=1.688;QD=2.64;ReadPosRankSum=-2.539;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,44:168:99:474,0,315 chrIV 1154538 . G C 210.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=14.22;MQ0=106;MQRankSum=-0.329;QD=1.19;ReadPosRankSum=-2.353;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,44:177:99:240,0,275 chrIV 1154539 . C A 246.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=1;MLEAF=0.500;MQ=14.13;MQ0=108;MQRankSum=-0.194;QD=1.38;ReadPosRankSum=-2.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,45:178:99:276,0,269 chrIV 1155755 . T A 73.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.159;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.54;MQ0=87;MQRankSum=-1.738;QD=0.74;ReadPosRankSum=1.448;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:1,98:99:12:106,12,0 chrIV 1155785 . G T 179.03 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.13;MQ0=48;QD=2.33;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:26,50:77:24:212,24,0 chrIV 1155821 . T A 516 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=4;QD=7.94;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:63:549,63,0 chrIV 1155822 . C T 538 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=4;QD=8.28;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:63:571,63,0 chrIV 1155833 . G A 538 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;QD=8.15;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:66:571,66,0 chrIV 1155836 . T A 491 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.92;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:60:524,60,0 chrIV 1155838 . A T 520 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.39;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:60:553,60,0 chrIV 1155850 . A G 469 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.20;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:57:502,57,0 chrIV 1155851 . A C 453 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.85;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:57:486,57,0 chrIV 1155854 . C T 472 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.26;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:57:505,57,0 chrIV 1155857 . G A 487 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.59;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:57:520,57,0 chrIV 1155859 . G T 489 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.63;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:57:522,57,0 chrIV 1155860 . G A 472 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.26;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:57:505,57,0 chrIV 1155866 . T C 465 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.69;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:57:498,57,0 chrIV 1155869 . G A 494 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.29;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:57:527,57,0 chrIV 1155872 . A G 448 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.74;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:57:481,57,0 chrIV 1155875 . A C 416 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.45;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:51:449,51,0 chrIV 1155877 . C G 471 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.70;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:51:504,51,0 chrIV 1155884 . A G 385 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=2;QD=8.56;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:45:418,45,0 chrIV 1155890 . C T 327 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=3;QD=8.61;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:39:360,39,0 chrIV 1155891 . A T 321 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=3;QD=8.45;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:39:354,39,0 chrIV 1155897 . G T 318 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=5;QD=7.95;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:36:351,36,0 chrIV 1156050 . A G 2559 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=21.87;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2592,300,0 chrIV 1156180 . A G 2498 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=21.72;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2531,285,0 chrIV 1156234 . G T 2171 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=14.1079;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.10;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2204,240,0 chrIV 1156298 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.44;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1893,207,0 chrIV 1156299 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.75;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1942,210,0 chrIV 1156399 . T C 2096 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.78;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2129,246,0 chrIV 1156406 . A G 2066 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.66;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2099,243,0 chrIV 1156699 . T A 2447 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.5421;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.53;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2480,273,0 chrIV 1156790 . A T 2041 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4670;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.83;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2074,234,0 chrIV 1156908 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.89;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1193,132,0 chrIV 1156945 . T G 539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.337;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.2388;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.347;QD=14.97;ReadPosRankSum=1.436;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:1,34:36:66:572,66,0 chrIV 1157008 . T C 819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=51;Dels=0.00;FS=4.437;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.455;QD=16.06;ReadPosRankSum=1.663;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:96:852,96,0 chrIV 1157122 . T C 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;MQRankSum=1.162;QD=19.10;ReadPosRankSum=2.379;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1370,153,0 chrIV 1157139 . C A 1264 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=16.85;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1297,141,0 chrIV 1157145 . C T 1255 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=16.73;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1288,141,0 chrIV 1157212 . C T 1422 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.48;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1455,156,0 chrIV 1157251 . A G 2175 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.53;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2208,252,0 chrIV 1157271 . A G 2446 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.86;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2479,279,0 chrIV 1157324 . T A 1807 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.02;FS=0.000;HaplotypeScore=104.7050;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=16.28;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1840,207,0 chrIV 1157841 . C G 2486 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.62;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2519,282,0 chrIV 1157970 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=129;Dels=0.00;FS=12.387;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.488;QD=21.80;ReadPosRankSum=3.390;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2845,330,0 chrIV 1158004 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.997;QD=20.95;ReadPosRankSum=1.680;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2798,315,0 chrIV 1158072 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.40;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3181,357,0 chrIV 1158334 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=24.38;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3681,414,0 chrIV 1158385 . G C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.91;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3460,390,0 chrIV 1158404 . C G 2973 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=21.39;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3006,345,0 chrIV 1158479 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.27;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3275,375,0 chrIV 1158484 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.75;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3249,360,0 chrIV 1158528 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.44;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2890,321,0 chrIV 1158562 . C G 3101 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.75;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3134,354,0 chrIV 1158574 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.52;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3213,354,0 chrIV 1158582 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.93;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2873,327,0 chrIV 1158614 . G C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.18;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3356,384,0 chrIV 1158667 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.03;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4054,447,0 chrIV 1158727 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.66;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3725,411,0 chrIV 1158820 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=4.328;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.593;QD=22.58;ReadPosRankSum=1.639;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3387,387,0 chrIV 1158904 . G C 2589 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.07;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2622,306,0 chrIV 1158961 . A G 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.069;QD=23.24;ReadPosRankSum=1.702;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2706,309,0 chrIV 1159022 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.93;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2379,279,0 chrIV 1159053 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=24.49;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3192,351,0 chrIV 1159088 . T A 2938 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=22.43;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2971,324,0 chrIV 1159113 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=23.33;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2203,237,0 chrIV 1159133 . A G 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;MQRankSum=-1.462;QD=19.23;ReadPosRankSum=1.624;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1283,150,0 chrIV 1159150 . T A 949 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=19.37;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:982,111,0 chrIV 1159171 . T C 626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=8.016;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;MQRankSum=-0.912;QD=16.47;ReadPosRankSum=1.641;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:78:659,78,0 chrIV 1159174 . A C 515 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=13.92;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:69:548,69,0 chrIV 1159206 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.02;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1150,126,0 chrIV 1159231 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=20.00;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1733,192,0 chrIV 1159247 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.22;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1985,216,0 chrIV 1159301 . G A 936 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=17.66;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:969,108,0 chrIV 1159357 . A G 88.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=8.02;SB=-2.526e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:121,15,0 chrIV 1159364 . G C 123.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=10.26;SB=-2.814e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:156,18,0 chrIV 1159372 . G T 114.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.248;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-1.736;QD=8.15;ReadPosRankSum=1.488;SB=-2.735e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:147,18,0 chrIV 1159375 . C A 121.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;MQRankSum=-1.737;QD=9.32;ReadPosRankSum=0.668;SB=-2.717e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:18:154,18,0 chrIV 1159381 . C T 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=10.51;SB=-2.814e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:159,18,0 chrIV 1159389 . C T 267 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=17.80;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:33:300,33,0 chrIV 1159396 . T G 250 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=16.67;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:33:283,33,0 chrIV 1159474 . T C 120.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DP=17;Dels=0.00;FS=21.461;HaplotypeScore=6.2000;MLEAC=1;MLEAF=0.500;MQ=40.41;MQ0=0;MQRankSum=-0.061;QD=7.06;ReadPosRankSum=1.031;SB=0.728 GT:AD:DP:GQ:PL 0/1:4,13:17:16:150,0,16 chrIV 1159689 . A G 2435 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=6;QD=22.76;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2468,282,0 chrIV 1159713 . C T 2350 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=23;QD=19.92;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2383,255,0 chrIV 1159797 . A G 1765 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=22.82;MQ0=81;MQRankSum=-1.010;QD=9.70;ReadPosRankSum=2.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:1798,207,0 chrIV 1159860 . A G 1518 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=22.86;MQ0=40;MQRankSum=-1.541;QD=10.19;ReadPosRankSum=1.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:1551,180,0 chrIV 1161206 . T G 203.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=15;MQRankSum=-0.587;QD=3.98;ReadPosRankSum=2.314;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:9,41:51:27:236,27,0 chrIV 1161213 . T A 334 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=5;QD=7.95;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:42:367,42,0 chrIV 1161214 . C T 346 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=4;QD=8.44;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,39:41:42:379,42,0 chrIV 1161225 . G A 323 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=7.51;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,42:43:42:356,42,0 chrIV 1161228 . T A 320 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=1;MQRankSum=0.121;QD=7.27;ReadPosRankSum=1.652;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,42:44:42:353,42,0 chrIV 1161230 . A T 361 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=1;QD=8.20;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,43:44:42:394,42,0 chrIV 1161242 . A G 202.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=6.12;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,32:33:27:235,27,0 chrIV 1161243 . A C 197.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=5.97;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,32:33:27:230,27,0 chrIV 1161246 . C T 214.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=6.49;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,32:33:27:247,27,0 chrIV 1161249 . G A 218.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=6.61;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,32:33:27:251,27,0 chrIV 1161251 . G T 211.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=6.39;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,32:33:27:244,27,0 chrIV 1161252 . G A 199.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=6.03;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,32:33:27:232,27,0 chrIV 1161258 . T C 204.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=1;QD=5.67;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,35:36:27:237,27,0 chrIV 1161261 . G A 213.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=1;QD=5.76;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,36:37:27:246,27,0 chrIV 1161264 . A G 164.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=1;QD=4.82;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:1,33:34:24:197,24,0 chrIV 1161267 . A C 181.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=1;QD=6.03;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:1,29:30:24:214,24,0 chrIV 1161269 . C G 195.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=1;QD=6.50;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:1,29:30:24:228,24,0 chrIV 1161276 . A G 166.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.48;MQ0=5;QD=4.88;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,33:34:21:199,21,0 chrIV 1161282 . C T 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=7;QD=5.27;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,29:30:21:191,21,0 chrIV 1161283 . A T 159.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=7;QD=5.30;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,29:30:21:192,21,0 chrIV 1161289 . G T 165.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=6;QD=5.69;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:198,21,0 chrIV 1161300 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=9;QD=0.91;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:9,15:24:6:53,6,0 chrIV 1161302 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=9;QD=0.91;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:9,15:24:6:53,6,0 chrIV 1161455 . A G 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=84;Dels=0.00;FS=3.062;HaplotypeScore=15.3717;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=0.736;QD=20.04;ReadPosRankSum=2.390;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,80:84:99:1716,198,0 chrIV 1161539 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=25.49;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1588,174,0 chrIV 1161556 . G A 1473 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=22.66;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1506,165,0 chrIV 1161629 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=15.00;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1143,126,0 chrIV 1161630 . G A 1098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=3.188;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;MQRankSum=0.439;QD=14.45;ReadPosRankSum=1.686;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1131,126,0 chrIV 1161688 . T C 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.248;DP=101;Dels=0.00;FS=8.047;HaplotypeScore=4.2248;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;MQRankSum=0.340;QD=18.30;ReadPosRankSum=3.300;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:4,97:101:99:1881,219,0 chrIV 1161744 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=22.95;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3223,351,0 chrIV 1161819 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=130;Dels=0.00;FS=5.051;HaplotypeScore=13.2022;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;MQRankSum=1.218;QD=21.78;ReadPosRankSum=1.705;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2865,324,0 chrIV 1161890 . G A 2128 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=122;Dels=0.00;FS=4.346;HaplotypeScore=13.4430;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;MQRankSum=-1.033;QD=17.44;ReadPosRankSum=3.396;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:5,117:122:99:2161,258,0 chrIV 1161891 . A G 2097 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.584;DP=121;Dels=0.00;FS=11.996;HaplotypeScore=13.4430;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;MQRankSum=-0.704;QD=17.33;ReadPosRankSum=4.595;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:8,113:121:99:2130,258,0 chrIV 1161894 . A G 2143 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=120;Dels=0.01;FS=6.131;HaplotypeScore=7.5666;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;MQRankSum=-1.127;QD=17.86;ReadPosRankSum=2.873;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2176,258,0 chrIV 1161927 . A G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=145;Dels=0.00;FS=5.497;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-0.881;QD=17.41;ReadPosRankSum=2.881;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2557,306,0 chrIV 1161960 . T C 3008 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.57;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3041,348,0 chrIV 1161972 . A T 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=177;Dels=0.00;FS=6.074;HaplotypeScore=10.5956;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.744;QD=19.32;ReadPosRankSum=2.926;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3419,372,0 chrIV 1162078 . G A 2474 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=15.37;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2507,276,0 chrIV 1162080 . A G 2289 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;MQRankSum=-1.019;QD=14.49;ReadPosRankSum=1.983;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2322,270,0 chrIV 1162081 . G A 2431 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=15.39;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2464,273,0 chrIV 1162102 . G T 1720 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=11.10;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1753,195,0 chrIV 1162103 . A C 1610 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=10.45;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1643,192,0 chrIV 1162210 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.0891;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.07;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4215,456,0 chrIV 1162357 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.726;QD=22.34;ReadPosRankSum=1.662;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3328,372,0 chrIV 1162396 . C G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.95;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3260,372,0 chrIV 1162444 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=21.07;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2667,294,0 chrIV 1162458 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.29;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2792,318,0 chrIV 1162575 . A G 1936 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=21.04;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1969,219,0 chrIV 1162582 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=21.74;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2033,222,0 chrIV 1162592 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=23.01;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2219,246,0 chrIV 1162650 . A C 2105 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=21.70;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2138,243,0 chrIV 1162688 . T C 2136 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=19.24;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2169,252,0 chrIV 1162694 . C A 2207 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=19.88;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2240,243,0 chrIV 1162942 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.0254;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=24.78;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4362,483,0 chrIV 1163209 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=195;Dels=0.00;FS=2.839;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=2;MQRankSum=-0.719;QD=20.79;ReadPosRankSum=2.373;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4054,471,0 chrIV 1163287 . C T 5305.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.3489;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=1;QD=23.90;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5305,574,0 chrIV 1163371 . G T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=375.1927;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=19.54;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4396,477,0 chrIV 1163374 . A G 139.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.989;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=372.0927;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=1;MQRankSum=2.120;QD=0.63;ReadPosRankSum=-4.130;SB=-2.806e+01 GT:AD:DP:GQ:PL 1/1:181,39:220:21:172,21,0 chrIV 1163436 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=1;QD=18.41;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:4732,513,0 chrIV 1163487 . T C 5725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.6962;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.238;QD=22.45;ReadPosRankSum=1.718;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5725,654,0 chrIV 1163557 . G T 7343.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.92;SB=-3.686e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:7343,810,0 chrIV 1163659 . C T 6215.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=21.7211;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.12;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:0,276:281:99:6215,702,0 chrIV 1163713 . C T 5556.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.5175;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.31;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5556,615,0 chrIV 1163767 . T C 5359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=265;Dels=0.00;FS=4.287;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.547;QD=20.22;ReadPosRankSum=1.679;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,262:265:99:5359,612,0 chrIV 1164049 . A G 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DP=268;Dels=0.00;FS=195.461;HaplotypeScore=11.9490;MLEAC=1;MLEAF=0.500;MQ=50.55;MQ0=0;MQRankSum=-12.557;QD=0.21;ReadPosRankSum=-2.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,91:268:85:85,0,3623 chrIV 1164181 . G A,C 4122.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=5.2602;MLEAC=1,1;MLEAF=0.500,0.500;MQ=38.25;MQ0=11;QD=16.04;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/2:0,89,167:257:99:4122,2294,2068,1829,0,1526 chrIV 1164184 . T G 2117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.012;DP=265;Dels=0.00;FS=0.479;HaplotypeScore=6.8376;MLEAC=1;MLEAF=0.500;MQ=39.02;MQ0=11;MQRankSum=3.822;QD=7.99;ReadPosRankSum=2.448;SB=-1.408e+03 GT:AD:DP:GQ:PL 0/1:95,169:265:99:2147,0,1586 chrIV 1164214 . G A 2576.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.177;DP=393;Dels=0.00;FS=0.773;HaplotypeScore=16.7630;MLEAC=1;MLEAF=0.500;MQ=41.68;MQ0=8;MQRankSum=7.536;QD=6.55;ReadPosRankSum=-1.161;SB=-2.101e+03 GT:AD:DP:GQ:PL 0/1:179,212:393:99:2606,0,3141 chrIV 1164226 . G A 2478.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.309;DP=423;Dels=0.00;FS=2.534;HaplotypeScore=17.9066;MLEAC=1;MLEAF=0.500;MQ=42.20;MQ0=3;MQRankSum=8.304;QD=5.86;ReadPosRankSum=-0.199;SB=-1.847e+03 GT:AD:DP:GQ:PL 0/1:208,214:423:99:2508,0,3558 chrIV 1164250 . G A 3555.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.516;DP=408;Dels=0.00;FS=4.971;HaplotypeScore=24.2245;MLEAC=1;MLEAF=0.500;MQ=44.02;MQ0=1;MQRankSum=-10.847;QD=8.71;ReadPosRankSum=2.541;SB=-1.831e+03 GT:AD:DP:GQ:PL 0/1:210,195:408:99:3555,0,2793 chrIV 1164289 . G A 2655.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.492;DP=372;Dels=0.00;FS=6.830;HaplotypeScore=13.2462;MLEAC=1;MLEAF=0.500;MQ=42.56;MQ0=4;MQRankSum=6.417;QD=7.14;ReadPosRankSum=1.900;SB=-1.483e+03 GT:AD:DP:GQ:PL 0/1:166,206:372:99:2685,0,2646 chrIV 1164310 . G A 949.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;DP=283;Dels=0.00;FS=38.663;HaplotypeScore=7.8715;MLEAC=1;MLEAF=0.500;MQ=41.75;MQ0=5;MQRankSum=-2.665;QD=3.35;ReadPosRankSum=0.701;SB=-3.550e+02 GT:AD:DP:GQ:PL 0/1:197,85:283:99:979,0,2664 chrIV 1164312 . A C 860.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.077;DP=278;Dels=0.00;FS=25.627;HaplotypeScore=7.8715;MLEAC=1;MLEAF=0.500;MQ=41.69;MQ0=5;MQRankSum=-2.354;QD=3.09;ReadPosRankSum=1.893;SB=-3.630e+02 GT:AD:DP:GQ:PL 0/1:202,76:278:99:890,0,2700 chrIV 1164350 . C G 2556 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=27.5994;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=4;QD=10.92;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,228:233:99:2589,297,0 chrIV 1164358 . T G 1127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.536;DP=201;Dels=0.00;FS=96.129;HaplotypeScore=13.9105;MLEAC=1;MLEAF=0.500;MQ=31.42;MQ0=4;MQRankSum=-2.551;QD=5.61;ReadPosRankSum=4.653;SB=-1.170e+03 GT:AD:DP:GQ:PL 0/1:42,158:201:99:1157,0,433 chrIV 1164360 . T G 1112.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.711;DP=202;Dels=0.00;FS=74.736;HaplotypeScore=15.4879;MLEAC=1;MLEAF=0.500;MQ=32.12;MQ0=3;MQRankSum=-2.366;QD=5.50;ReadPosRankSum=3.689;SB=-1.180e+03 GT:AD:DP:GQ:PL 0/1:38,160:202:99:1142,0,431 chrIV 1164361 . A G 1927 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.160;DP=201;Dels=0.00;FS=4.259;HaplotypeScore=13.9105;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=3;MQRankSum=0.272;QD=9.59;ReadPosRankSum=2.484;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:5,194:201:99:1960,209,0 chrIV 1164364 . C T 366.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.571;DP=217;Dels=0.00;FS=96.194;HaplotypeScore=14.5897;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=3;MQRankSum=3.326;QD=1.69;ReadPosRankSum=-0.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,32:217:99:396,0,1245 chrIV 1164366 . T G 313.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;DP=221;Dels=0.00;FS=110.049;HaplotypeScore=14.5897;MLEAC=1;MLEAF=0.500;MQ=32.64;MQ0=3;MQRankSum=3.133;QD=1.42;ReadPosRankSum=0.307;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,31:221:99:343,0,1422 chrIV 1164373 . G A 2681 SnpCluster AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=1;QD=11.46;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:2714,312,0 chrIV 1164382 . C G 222.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;DP=244;Dels=0.00;FS=110.963;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=39.62;MQ0=0;MQRankSum=-1.198;QD=0.91;ReadPosRankSum=3.220;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,34:244:99:252,0,2392 chrIV 1164384 . A T 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;DP=249;Dels=0.00;FS=97.484;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=0;MQRankSum=-0.404;QD=0.86;ReadPosRankSum=3.318;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:214,35:249:99:244,0,2558 chrIV 1164391 . A G 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.168;DP=265;Dels=0.00;FS=106.097;HaplotypeScore=18.3244;MLEAC=1;MLEAF=0.500;MQ=41.99;MQ0=0;MQRankSum=-2.720;QD=0.41;ReadPosRankSum=4.606;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,33:265:99:139,0,3035 chrIV 1164397 . G A 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.661;DP=262;Dels=0.00;FS=99.519;HaplotypeScore=8.8602;MLEAC=1;MLEAF=0.500;MQ=43.09;MQ0=0;MQRankSum=-3.726;QD=0.42;ReadPosRankSum=4.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,32:262:99:139,0,3120 chrIV 1164398 . G T 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;DP=262;Dels=0.00;FS=98.499;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=43.22;MQ0=0;MQRankSum=-3.230;QD=0.37;ReadPosRankSum=4.502;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,32:262:99:127,0,3193 chrIV 1164399 . C T 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.209;DP=262;Dels=0.00;FS=95.590;HaplotypeScore=6.4942;MLEAC=1;MLEAF=0.500;MQ=43.19;MQ0=0;MQRankSum=-2.475;QD=0.31;ReadPosRankSum=4.330;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,31:262:99:112,0,3087 chrIV 1164487 . T G 3199 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.9784;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=17.48;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3232,369,0 chrIV 1164502 . A G 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=166;Dels=0.00;FS=2.722;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=0.722;QD=16.15;ReadPosRankSum=2.420;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:2714,312,0 chrIV 1164529 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=14.62;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2372,255,0 chrIV 1164697 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3618;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.68;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2165,237,0 chrIV 1164726 . A T 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-1.732;QD=20.89;ReadPosRankSum=1.614;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1871,204,0 chrIV 1164785 . C T 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.577;DP=71;Dels=0.00;FS=3.919;HaplotypeScore=61.6787;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=1.185;QD=0.68;ReadPosRankSum=-3.871;SB=-3.897e+01 GT:AD:DP:GQ:PL 1/1:64,6:71:9:80,9,0 chrIV 1165247 . G C 2011 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=19.15;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2044,234,0 chrIV 1165262 . T A 2123 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=100.5169;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=18.46;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2156,243,0 chrIV 1165302 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=18.24;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2003,222,0 chrIV 1165519 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=22.6207;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=18.96;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2100,228,0 chrIV 1165586 . A G 2502 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.26;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2535,291,0 chrIV 1165587 . G C 2557 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.40;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2590,291,0 chrIV 1165728 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=1.034;QD=21.04;ReadPosRankSum=1.705;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2747,315,0 chrIV 1165878 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=22.71;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2758,306,0 chrIV 1165886 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=21.94;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2556,279,0 chrIV 1165910 . A G 2050 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.71;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2083,237,0 chrIV 1165937 . A G 2175 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.71;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2208,255,0 chrIV 1166094 . A G 1048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=73;Dels=0.00;FS=6.214;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-1.127;QD=14.36;ReadPosRankSum=2.379;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:2,67:73:99:1081,123,0 chrIV 1166114 . C T 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.141;DP=83;Dels=0.00;FS=3.575;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=1.648;QD=15.29;ReadPosRankSum=-0.760;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1302,147,0 chrIV 1166130 . T G 1367 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.08;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1400,162,0 chrIV 1166174 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.12;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1844,207,0 chrIV 1166200 . C T 2018 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.70;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2051,225,0 chrIV 1166232 . T A 2152 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8820;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.52;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2185,243,0 chrIV 1166306 . T A 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8179;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-0.648;QD=23.99;ReadPosRankSum=1.702;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2792,303,0 chrIV 1166364 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=23.14;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3041,345,0 chrIV 1166461 . C T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.94;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4428,486,0 chrIV 1166557 . G A 2779 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=21.05;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2812,318,0 chrIV 1166561 . G A 2421 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=19.84;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2454,282,0 chrIV 1166562 . C T 2357 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=20.15;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2390,273,0 chrIV 1166581 . A C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=0.912;QD=17.81;ReadPosRankSum=1.626;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2366,273,0 chrIV 1166645 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.97;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3048,330,0 chrIV 1166693 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=19.5329;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=22.05;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3395,375,0 chrIV 1166741 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=18.28;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1971,234,0 chrIV 1166743 . A G 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=103;Dels=0.00;FS=5.308;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;MQRankSum=-1.596;QD=19.37;ReadPosRankSum=3.371;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:4,99:103:99:2028,237,0 chrIV 1166782 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=19.83;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1699,201,0 chrIV 1166791 . A C 1532 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=18.68;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1565,180,0 chrIV 1166844 . T C 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=3.096;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=1.087;QD=19.57;ReadPosRankSum=1.698;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2049,237,0 chrIV 1166875 . T C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=3.184;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.155;QD=19.84;ReadPosRankSum=1.698;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2057,228,0 chrIV 1166919 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.19;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1830,213,0 chrIV 1166921 . T C 1872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.385;QD=20.80;ReadPosRankSum=1.617;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1905,216,0 chrIV 1166937 . T C 1720 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.48;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1753,198,0 chrIV 1167032 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.05;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1843,216,0 chrIV 1167052 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.18;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2281,246,0 chrIV 1167188 . A C 2978 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.82;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3011,354,0 chrIV 1167232 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=25.22;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3379,360,0 chrIV 1167361 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.60;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4248,483,0 chrIV 1167451 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.3012;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.44;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4263,468,0 chrIV 1167562 . C A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=17.72;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4023,453,0 chrIV 1167700 . C T 4820.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=22.63;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4820,534,0 chrIV 1167712 . T C 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=218;Dels=0.00;FS=6.753;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=-1.544;QD=21.73;ReadPosRankSum=2.404;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:4737,540,0 chrIV 1167790 . G A 4997.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.11;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4997,552,0 chrIV 1167802 . G T 4928.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.43;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4928,546,0 chrIV 1167913 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.756;DP=201;Dels=0.00;FS=17.611;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.243;QD=21.79;ReadPosRankSum=3.764;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:5,195:201:99:4380,501,0 chrIV 1167961 . A G 5314.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.2159;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.43;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5314,623,0 chrIV 1168078 . A G 5229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.169;DP=232;Dels=0.00;FS=15.822;HaplotypeScore=10.3353;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.653;QD=22.54;ReadPosRankSum=2.775;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:5,227:232:99:5229,580,0 chrIV 1168188 . G A 5114.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.0513;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5114,561,0 chrIV 1168767 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.47;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1732,195,0 chrIV 1168770 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.92;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1679,183,0 chrIV 1168940 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.13;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3153,348,0 chrIV 1168958 . C A 2610 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.71;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2643,285,0 chrIV 1169049 . G A 4223.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.33;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4223,459,0 chrIV 1169118 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=153;Dels=0.00;FS=5.641;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.713;QD=21.65;ReadPosRankSum=2.954;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:3,148:153:99:3313,378,0 chrIV 1169278 . T C 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=132;Dels=0.00;FS=6.601;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.574;QD=22.32;ReadPosRankSum=2.338;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2979,336,0 chrIV 1169426 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3353;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.17;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3369,393,0 chrIV 1169428 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.14;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3488,384,0 chrIV 1169720 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.120;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.996;QD=21.81;ReadPosRankSum=1.710;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3490,399,0 chrIV 1169732 . C A 3191 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.27;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3224,345,0 chrIV 1170023 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.33;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3546,414,0 chrIV 1170239 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.45;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3766,411,0 chrIV 1170278 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.50;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3590,411,0 chrIV 1170282 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.80;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3411,390,0 chrIV 1170302 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1036;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.38;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3017,333,0 chrIV 1170383 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.4281;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.435;QD=22.97;ReadPosRankSum=1.306;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4296,456,0 chrIV 1170508 . G A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.18;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4636,498,0 chrIV 1170617 . A G 5411.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.56;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5411,618,0 chrIV 1170698 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.87;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4583,501,0 chrIV 1170728 . G A 4656.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=18.2081;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.05;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4656,504,0 chrIV 1170836 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3993,441,0 chrIV 1171018 . C A 4092.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=23.5350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,201:206:99:4092,444,0 chrIV 1171148 . T C 6839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=19.5139;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.279;QD=23.66;ReadPosRankSum=2.432;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:2,284:289:99:6839,749,0 chrIV 1171222 . A G 5649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=260;Dels=0.00;FS=6.741;HaplotypeScore=14.4842;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.433;QD=21.73;ReadPosRankSum=2.345;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:2,256:260:99:5649,630,0 chrIV 1171304 . A G 6549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.631;QD=20.21;ReadPosRankSum=1.721;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:1,323:324:99:6549,759,0 chrIV 1171409 . T C 4666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=250;Dels=0.00;FS=9.229;HaplotypeScore=22.6015;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.626;QD=18.66;ReadPosRankSum=2.419;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,243:250:99:4666,531,0 chrIV 1171430 . G C 4003.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=18.88;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:4003,471,0 chrIV 1171598 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.10;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3834,417,0 chrIV 1171863 . T A 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.01;FS=4.205;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.263;QD=22.35;ReadPosRankSum=1.688;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3554,387,0 chrIV 1171894 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.73;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3568,408,0 chrIV 1171993 . T G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=133;Dels=0.00;FS=20.158;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=0.078;QD=18.44;ReadPosRankSum=3.778;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:5,126:133:99:2485,282,0 chrIV 1172008 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=16.75;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2278,252,0 chrIV 1172018 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=17.75;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2340,261,0 chrIV 1172058 . A G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=4.649;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.718;QD=18.59;ReadPosRankSum=1.707;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2635,300,0 chrIV 1172497 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.782;QD=22.55;ReadPosRankSum=1.711;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3720,429,0 chrIV 1172576 . G C 4581.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.0693;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.81;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4581,522,0 chrIV 1172599 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.4596;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.76;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4464,510,0 chrIV 1172695 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.01;FS=0.000;HaplotypeScore=8.2976;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=20.53;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4003,435,0 chrIV 1172698 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=192;Dels=0.00;FS=12.478;HaplotypeScore=7.5223;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-0.757;QD=18.07;ReadPosRankSum=2.930;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:3,183:192:99:3470,405,0 chrIV 1172894 . A G 2642 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.0404;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=19.43;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2675,309,0 chrIV 1172908 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.441;DP=136;Dels=0.00;FS=18.723;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-1.067;QD=18.19;ReadPosRankSum=4.361;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:7,128:136:99:2507,285,0 chrIV 1172914 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=19.04;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2736,306,0 chrIV 1172929 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.06;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3811,423,0 chrIV 1173007 . G A 5151.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.8218;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.41;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5151,579,0 chrIV 1173569 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=3.038;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.512;QD=22.84;ReadPosRankSum=1.710;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3677,420,0 chrIV 1173622 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.96;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3306,360,0 chrIV 1173661 . G C 2396 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.0116;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=19.17;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2429,293,0 chrIV 1173670 . C T 2558 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=19.68;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2591,288,0 chrIV 1173678 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.50;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2724,321,0 chrIV 1173839 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.3069;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.63;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3621,399,0 chrIV 1173894 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.14;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3585,396,0 chrIV 1173897 . A T 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=4.894;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=0.706;QD=19.58;ReadPosRankSum=1.693;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3505,384,0 chrIV 1174054 . C A 5710.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=10.4726;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.50;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5710,619,0 chrIV 1174213 . T C 5754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=249;Dels=0.01;FS=4.496;HaplotypeScore=49.5968;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.209;QD=23.11;ReadPosRankSum=1.690;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5754,660,0 chrIV 1174270 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.02;FS=0.000;HaplotypeScore=40.6132;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.47;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4252,501,0 chrIV 1174282 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.33;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3818,426,0 chrIV 1175004 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=21.77;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3015,336,0 chrIV 1175016 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.32;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2934,321,0 chrIV 1175150 . A G 2308 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=23.31;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2341,264,0 chrIV 1175169 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=3;QD=22.15;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2093,234,0 chrIV 1175302 . C T 437 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.00;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:51:470,51,0 chrIV 1175310 . C T 381 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.41;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:414,45,0 chrIV 1175476 . A G 23.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.10;MQ0=23;MQRankSum=-0.727;QD=0.85;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,5:27:16:53,0,16 chrIV 1175496 . T C 23.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.86;MQ0=19;MQRankSum=-0.727;QD=1.00;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,4:23:15:53,0,15 chrIV 1175497 . A G 23.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.08;MQ0=18;MQRankSum=-0.727;QD=1.05;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,4:22:16:53,0,16 chrIV 1175580 . C T 98.26 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.17;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:131,15,0 chrIV 1175605 . C T 161.06 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.20;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:21:194,21,0 chrIV 1175622 . G T 161.06 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.20;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:21:194,21,0 chrIV 1175624 . C A 152.06 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.91;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:21:185,21,0 chrIV 1175826 . A G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=83;Dels=0.00;FS=4.420;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.689;QD=22.22;ReadPosRankSum=1.690;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1877,219,0 chrIV 1176432 . T G 3518.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.7137;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3518,402,0 chrIV 1176543 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3331;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.04;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3147,357,0 chrIV 1176633 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.76;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3397,387,0 chrIV 1176840 . A T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.6122;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.91;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3347,369,0 chrIV 1176852 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.25;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2800,315,0 chrIV 1176920 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=114;Dels=0.00;FS=6.133;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.655;QD=21.73;ReadPosRankSum=2.885;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2510,279,0 chrIV 1176974 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.83;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3360,366,0 chrIV 1177557 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.26;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2508,276,0 chrIV 1177587 . T C 2214 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.09;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2247,255,0 chrIV 1177590 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.491;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.016;QD=20.41;ReadPosRankSum=1.699;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2176,249,0 chrIV 1178145 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.61;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3424,372,0 chrIV 1178260 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3209,348,0 chrIV 1178350 . C A 1270 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=11.98;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1303,147,0 chrIV 1178525 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.61;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3376,384,0 chrIV 1178975 . C T 4466.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.22;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4466,486,0 chrIV 1179125 . A G 4750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=210;Dels=0.00;FS=6.467;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.350;QD=22.62;ReadPosRankSum=2.356;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4750,537,0 chrIV 1179516 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=4.815;HaplotypeScore=12.1742;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.057;QD=21.45;ReadPosRankSum=1.715;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,199:203:99:4354,495,0 chrIV 1179751 . A G 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=3.231;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.995;QD=21.13;ReadPosRankSum=1.658;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3033,348,0 chrIV 1180090 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3085,351,0 chrIV 1181300 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.54;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1498,174,0 chrIV 1181312 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=22.80;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1606,174,0 chrIV 1181316 . A G 1406 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.68;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1439,168,0 chrIV 1181332 . T C 1254 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.25;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1287,147,0 chrIV 1181427 . A T 916 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=19.91;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:949,102,0 chrIV 1181437 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=18.95;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1170,129,0 chrIV 1181528 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=1.710;QD=19.44;ReadPosRankSum=2.265;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1608,186,0 chrIV 1181542 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=18.22;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1418,165,0 chrIV 1181555 . G C 1205 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=17.46;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1238,138,0 chrIV 1181605 . G A 1423 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=16.74;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1456,159,0 chrIV 1181607 . G A 1427 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=16.79;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1460,159,0 chrIV 1181608 . G A 1467 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=16.86;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1500,165,0 chrIV 1181616 . A C 1335 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.139;DP=114;Dels=0.00;FS=3.140;HaplotypeScore=24.2549;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-0.161;QD=11.71;ReadPosRankSum=4.313;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:9,103:114:99:1368,162,0 chrIV 1181621 . A C 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=127;Dels=0.00;FS=8.600;HaplotypeScore=47.1109;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;MQRankSum=-1.617;QD=9.02;ReadPosRankSum=7.269;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:23,103:127:99:1178,152,0 chrIV 1181703 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=-1.614;QD=19.17;ReadPosRankSum=1.712;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3413,387,0 chrIV 1181721 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.47;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3828,414,0 chrIV 1181771 . A C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=182;Dels=0.00;FS=4.188;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=1.005;QD=18.98;ReadPosRankSum=1.713;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3455,396,0 chrIV 1182010 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=156;Dels=0.00;FS=7.398;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.396;QD=19.30;ReadPosRankSum=2.386;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3044,342,0 chrIV 1182055 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.83;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3479,399,0 chrIV 1182061 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.90;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3383,387,0 chrIV 1182448 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.234;QD=21.73;ReadPosRankSum=1.710;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3477,396,0 chrIV 1182460 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.665;QD=20.94;ReadPosRankSum=1.710;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3350,384,0 chrIV 1182631 . C T 4471.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.2294;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.66;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4471,489,0 chrIV 1182715 . A C 4874.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.55;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4874,561,0 chrIV 1182860 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=168;Dels=0.00;FS=8.237;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.728;QD=21.38;ReadPosRankSum=2.391;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3592,417,0 chrIV 1183224 . G T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.4639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3878,420,0 chrIV 1183454 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=186;Dels=0.00;FS=3.277;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.320;QD=22.37;ReadPosRankSum=0.440;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4160,459,0 chrIV 1184039 . A T 3064 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.21;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3097,345,0 chrIV 1184165 . T C 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=5.278;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.558;QD=20.81;ReadPosRankSum=1.673;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2489,279,0 chrIV 1184340 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.464;QD=22.85;ReadPosRankSum=1.701;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2638,300,0 chrIV 1184427 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.99;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2953,333,0 chrIV 1184604 . T A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.83;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3333,363,0 chrIV 1184629 . A C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.064;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.497;QD=21.96;ReadPosRankSum=1.711;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3602,405,0 chrIV 1184654 . A T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.74;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3544,393,0 chrIV 1184765 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.03;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3103,339,0 chrIV 1184776 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.94;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3144,357,0 chrIV 1184923 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.43;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4202,459,0 chrIV 1184947 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.48;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4541,504,0 chrIV 1185226 . C T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.0632;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.09;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4838,540,0 chrIV 1185268 . T G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.9125;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.062;QD=20.40;ReadPosRankSum=1.695;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3652,429,0 chrIV 1185403 . A C 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.996;QD=21.44;ReadPosRankSum=1.678;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4138,471,0 chrIV 1185460 . A T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.84;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4063,447,0 chrIV 1185490 . T C 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=205;Dels=0.00;FS=3.295;HaplotypeScore=17.3285;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.667;QD=20.96;ReadPosRankSum=1.681;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4296,486,0 chrIV 1185562 . T C 4859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;DP=215;Dels=0.00;FS=2.261;HaplotypeScore=12.7223;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.507;QD=22.60;ReadPosRankSum=1.728;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:4859,524,0 chrIV 1185649 . T C 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.060;QD=24.28;ReadPosRankSum=1.698;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4929,558,0 chrIV 1185927 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.60;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4390,480,0 chrIV 1186031 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.4158;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.780;QD=23.03;ReadPosRankSum=2.316;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4699,543,0 chrIV 1186055 . C G 4600.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.44;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4600,510,0 chrIV 1186191 . A T 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.1441;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.256;QD=21.93;ReadPosRankSum=1.717;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5044,552,0 chrIV 1186274 . G A 5159.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.83;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5159,564,0 chrIV 1186391 . C T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8344;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.44;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4252,474,0 chrIV 1186610 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.4511;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.70;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2869,321,0 chrIV 1186629 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.475;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.226;QD=20.01;ReadPosRankSum=1.707;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2815,315,0 chrIV 1186670 . C A 2319 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.70;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2352,258,0 chrIV 1186685 . A G 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.243;QD=16.72;ReadPosRankSum=1.646;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2073,237,0 chrIV 1186811 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.45;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3423,369,0 chrIV 1187416 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=4.543;HaplotypeScore=7.8499;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.546;QD=24.21;ReadPosRankSum=1.701;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2744,309,0 chrIV 1187635 . T C 1931 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.99;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1964,231,0 chrIV 1187661 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.82;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1449,168,0 chrIV 1187718 . A G 1555 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.60;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1588,186,0 chrIV 1187870 . A G 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=3.058;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.058;QD=21.16;ReadPosRankSum=2.316;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:2,90:93:99:2001,231,0 chrIV 1187884 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.94;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1980,225,0 chrIV 1188542 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8702;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.24;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3976,453,0 chrIV 1188946 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.0194;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3650,402,0 chrIV 1189283 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=4.603;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.389;QD=21.14;ReadPosRankSum=1.664;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2168,246,0 chrIV 1189463 . C T 2043 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.21;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2076,231,0 chrIV 1189499 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.022;QD=19.52;ReadPosRankSum=1.688;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1595,183,0 chrIV 1189643 . C A 1827 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.23;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1860,204,0 chrIV 1189652 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.388;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.397;QD=20.62;ReadPosRankSum=1.660;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2013,228,0 chrIV 1189867 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.98;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1400,159,0 chrIV 1189955 . T C 1061 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.29;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1094,123,0 chrIV 1189996 . A G 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=57;Dels=0.00;FS=10.540;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.684;QD=18.32;ReadPosRankSum=2.362;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:2,54:57:99:1077,123,0 chrIV 1190196 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.045;QD=22.53;ReadPosRankSum=1.672;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2647,303,0 chrIV 1190444 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3824,417,0 chrIV 1190556 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.9925;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4642,525,0 chrIV 1190854 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.4456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3384,369,0 chrIV 1190973 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3330,375,0 chrIV 1191127 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=148;Dels=0.00;FS=4.508;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.000;QD=19.39;ReadPosRankSum=1.708;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:2902,327,0 chrIV 1191177 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.3218;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.070;QD=21.10;ReadPosRankSum=1.688;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3355,381,0 chrIV 1191233 . C G 3990.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.33;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3990,441,0 chrIV 1191616 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.3283;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.67;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4142,453,0 chrIV 1191716 . G C 2504 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.96;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2537,279,0 chrIV 1191917 . G A 763 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=14.40;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:93:796,93,0 chrIV 1191935 . G A 1110 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.34;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1143,129,0 chrIV 1192374 . G C 2920 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.86;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2953,342,0 chrIV 1192830 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.122;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.425;QD=21.53;ReadPosRankSum=1.710;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3444,390,0 chrIV 1193193 . C G 2966 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.9365;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.89;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2999,336,0 chrIV 1193217 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.330;QD=21.09;ReadPosRankSum=1.707;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2986,336,0 chrIV 1193279 . T C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.514;DP=143;Dels=0.00;FS=5.525;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=2.740;QD=19.01;ReadPosRankSum=2.923;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2752,312,0 chrIV 1193452 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.41;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3787,432,0 chrIV 1193494 . G A 4336.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.44;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4336,471,0 chrIV 1193552 . C G 4342.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.71;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4342,495,0 chrIV 1193575 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.19;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4313,459,0 chrIV 1193659 . A G 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.394;HaplotypeScore=13.6267;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.387;QD=21.58;ReadPosRankSum=1.663;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,200:204:99:4402,510,0 chrIV 1193697 . G A 5071.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.59;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5071,555,0 chrIV 1193937 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.5473;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.90;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3327,372,0 chrIV 1194088 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3718,423,0 chrIV 1194138 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.87;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3957,438,0 chrIV 1194207 . T A 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=2.988;HaplotypeScore=12.7895;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.105;QD=22.53;ReadPosRankSum=2.419;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3583,387,0 chrIV 1194344 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.81;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3507,393,0 chrIV 1194510 . T G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=6.871;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.843;QD=21.86;ReadPosRankSum=2.418;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3432,393,0 chrIV 1194600 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.67;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2947,336,0 chrIV 1195306 . A G 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.997;QD=21.46;ReadPosRankSum=1.697;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2158,249,0 chrIV 1195687 . T C 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.053;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.5705;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.348;QD=21.04;ReadPosRankSum=0.077;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4397,460,0 chrIV 1195958 . T A 2475 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2508,279,0 chrIV 1196227 . T G 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=3.757;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.687;QD=20.14;ReadPosRankSum=1.641;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1564,180,0 chrIV 1196309 . A G 2169 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.84;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2202,252,0 chrIV 1196388 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.55;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2082,237,0 chrIV 1196444 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.485;QD=23.67;ReadPosRankSum=1.683;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1690,192,0 chrIV 1196505 . A T 1334 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.17;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1367,153,0 chrIV 1196608 . T A 159.06 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=99.4636;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=1.35;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:21:192,21,0 chrIV 1196619 . A G 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=129;Dels=0.00;FS=8.882;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.591;QD=17.95;ReadPosRankSum=2.411;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2349,273,0 chrIV 1197080 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.102;QD=23.05;ReadPosRankSum=1.634;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4057,456,0 chrIV 1197129 . G T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.0650;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4458,504,0 chrIV 1197543 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.113;QD=21.94;ReadPosRankSum=1.670;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3686,423,0 chrIV 1197984 . A G 3012 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.77;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3045,345,0 chrIV 1197999 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.98;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3198,354,0 chrIV 1198335 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.58;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3608,408,0 chrIV 1198463 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.86;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4343,480,0 chrIV 1198548 . G C 3981.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.0537;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.40;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3981,459,0 chrIV 1199289 . A T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.94;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3495,387,0 chrIV 1199413 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.6919;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3651,402,0 chrIV 1199588 . T C 2868 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2901,324,0 chrIV 1199672 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2329;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.55;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3249,348,0 chrIV 1199944 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3004,324,0 chrIV 1200253 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.544;QD=22.69;ReadPosRankSum=1.707;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3164,357,0 chrIV 1200337 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=154;Dels=0.00;FS=16.647;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.653;QD=23.94;ReadPosRankSum=3.402;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:3686,405,0 chrIV 1200582 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2616,291,0 chrIV 1200630 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.41;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2632,297,0 chrIV 1200872 . T A 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=108;Dels=0.00;FS=2.599;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.365;QD=23.56;ReadPosRankSum=2.823;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2577,282,0 chrIV 1200988 . A T 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.942;QD=24.22;ReadPosRankSum=1.671;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2794,300,0 chrIV 1201144 . G T 3118 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.98;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3151,348,0 chrIV 1201367 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.68;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2114,237,0 chrIV 1201525 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.86;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1999,225,0 chrIV 1201527 . C A 2073 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.52;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2106,234,0 chrIV 1201621 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.96;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2878,324,0 chrIV 1201657 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.13;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3306,375,0 chrIV 1201701 . A T 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=109;Dels=0.00;FS=2.707;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.124;QD=22.54;ReadPosRankSum=2.269;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2490,279,0 chrIV 1201870 . A C 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.143;QD=20.77;ReadPosRankSum=1.691;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1819,207,0 chrIV 1202038 . T C 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=2.694;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.290;QD=22.01;ReadPosRankSum=2.363;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1904,228,0 chrIV 1202081 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.357;QD=23.27;ReadPosRankSum=1.646;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2825,318,0 chrIV 1202136 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.14;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3772,417,0 chrIV 1202187 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.487;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=19.2909;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.781;QD=20.06;ReadPosRankSum=1.143;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3142,357,0 chrIV 1202248 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.87;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3270,369,0 chrIV 1202493 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1621,177,0 chrIV 1202624 . G A 1308 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1341,147,0 chrIV 1202720 . C A 1817 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1850,207,0 chrIV 1202939 . T C 2510 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.24;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2543,297,0 chrIV 1203967 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.09;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2150,231,0 chrIV 1205010 . C G 3696.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.31;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3696,435,0 chrIV 1205529 . C T 5675.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.70;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5675,604,0 chrIV 1205559 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8088;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.37;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4359,471,0 chrIV 1205574 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.85;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4004,456,0 chrIV 1205646 . G C 2853 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.09;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2886,327,0 chrIV 1206115 . G T 3077 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3110,336,0 chrIV 1206306 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2584,288,0 chrIV 1206415 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.47;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2639,288,0 chrIV 1206428 . G T 2817 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.02;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2850,324,0 chrIV 1206699 . A T 642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.386;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;MQRankSum=-1.732;QD=16.89;ReadPosRankSum=0.163;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,36:38:31:675,31,0 chrIV 1213399 . A T 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.765;QD=24.72;ReadPosRankSum=1.692;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4251,462,0 chrIV 1213634 . G C 2774 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.67;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2807,315,0 chrIV 1213651 . A G 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.736;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.586;QD=21.10;ReadPosRankSum=1.705;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2776,321,0 chrIV 1213652 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.47;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2954,321,0 chrIV 1213709 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.03;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2830,318,0 chrIV 1213821 . A T 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.357;QD=21.65;ReadPosRankSum=1.707;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2978,336,0 chrIV 1213825 . C A 2936 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.28;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2969,324,0 chrIV 1214002 . T C 2616 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.62;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2649,297,0 chrIV 1214004 . A G 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.072;QD=21.63;ReadPosRankSum=1.703;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2650,297,0 chrIV 1214371 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.06;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2846,303,0 chrIV 1214386 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7710;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.04;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2398,276,0 chrIV 1214533 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=22.33;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3573,387,0 chrIV 1214538 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=4.325;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-0.320;QD=19.05;ReadPosRankSum=1.710;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3081,351,0 chrIV 1214545 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.33;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3048,357,0 chrIV 1214632 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=3.203;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.441;QD=24.64;ReadPosRankSum=0.334;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3992,438,0 chrIV 1214860 . T A 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.996;DP=103;Dels=0.00;FS=3.835;HaplotypeScore=8.5590;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.709;QD=21.47;ReadPosRankSum=0.586;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2244,252,0 chrIV 1214876 . C G 1997 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.47;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2030,234,0 chrIV 1215065 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.292;QD=23.73;ReadPosRankSum=1.644;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2833,318,0 chrIV 1215093 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.33;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2636,291,0 chrIV 1215127 . A T 2086 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.18;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2119,231,0 chrIV 1215179 . A G 2448 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2481,288,0 chrIV 1215289 . T G 3038 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.67;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3071,351,0 chrIV 1215366 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.82;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2280,246,0 chrIV 1215541 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.12;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2992,333,0 chrIV 1215616 . T C 2310 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.418;DP=124;Dels=0.00;FS=2.926;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;MQRankSum=2.712;QD=18.63;ReadPosRankSum=4.960;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:10,114:124:99:2343,206,0 chrIV 1215621 . T C 1722 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.024;DP=114;Dels=0.00;FS=1.241;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=1.574;QD=15.11;ReadPosRankSum=4.781;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:11,101:114:99:1755,207,0 chrIV 1215622 . G T 1747 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.893;DP=112;Dels=0.00;FS=4.662;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;MQRankSum=0.811;QD=15.60;ReadPosRankSum=4.168;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:10,102:112:99:1780,207,0 chrIV 1215670 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=18.21;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1945,222,0 chrIV 1215691 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=16.24;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1819,210,0 chrIV 1215707 . C A 2063 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=17.05;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2096,234,0 chrIV 1215753 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.38;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2556,291,0 chrIV 1215808 . A G 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.6592;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=1.161;QD=20.79;ReadPosRankSum=1.125;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2050,237,0 chrIV 1215850 . G A 1649 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=17.18;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1682,195,0 chrIV 1215851 . G A 1755 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=18.47;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1788,195,0 chrIV 1215859 . A G 1567 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=6.950;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;MQRankSum=0.746;QD=15.07;ReadPosRankSum=2.379;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1600,189,0 chrIV 1215936 . T G 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=3.089;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.433;QD=19.11;ReadPosRankSum=1.701;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2173,243,0 chrIV 1215941 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.898;QD=19.88;ReadPosRankSum=1.700;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2180,252,0 chrIV 1215994 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.765;QD=19.27;ReadPosRankSum=1.670;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2210,261,0 chrIV 1216099 . A T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=22.63;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3983,447,0 chrIV 1216309 . C G 3909.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.1984;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=18.79;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:3909,435,0 chrIV 1216313 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-1.249;QD=17.83;ReadPosRankSum=1.682;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:3708,426,0 chrIV 1216327 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.455;QD=17.44;ReadPosRankSum=1.684;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:3836,432,0 chrIV 1216405 . T C 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=185;Dels=0.00;FS=14.272;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;MQRankSum=0.966;QD=16.31;ReadPosRankSum=3.353;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:4,176:185:99:3050,339,0 chrIV 1216417 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.245;DP=171;Dels=0.00;FS=9.141;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=-1.446;QD=15.40;ReadPosRankSum=3.367;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:2667,306,0 chrIV 1216425 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.679;QD=16.27;ReadPosRankSum=1.712;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2816,318,0 chrIV 1216429 . A G 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;MQRankSum=-0.509;QD=15.56;ReadPosRankSum=1.691;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2678,306,0 chrIV 1216449 . T C 2500 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=14.97;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2533,294,0 chrIV 1216848 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.66;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2163,237,0 chrIV 1217031 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.146;QD=22.83;ReadPosRankSum=1.679;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3001,339,0 chrIV 1217085 . G T 2557 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.37;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2590,291,0 chrIV 1217086 . T A 2570 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.18;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2603,294,0 chrIV 1217139 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.347;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.879;QD=18.96;ReadPosRankSum=1.706;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2573,294,0 chrIV 1217182 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.10;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2776,315,0 chrIV 1217208 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.12;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2865,312,0 chrIV 1217501 . G C 2262 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2295,261,0 chrIV 1217807 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.86;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2460,267,0 chrIV 1218265 . A C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-1.732;QD=21.94;ReadPosRankSum=1.677;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2798,318,0 chrIV 1218427 . T G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9520;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;MQRankSum=1.136;QD=16.27;ReadPosRankSum=1.709;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:2538,294,0 chrIV 1218434 . A G 2366 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;QD=17.02;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2399,273,0 chrIV 1218442 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=16.18;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2234,252,0 chrIV 1218445 . A G 2204 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=15.63;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2237,249,0 chrIV 1218463 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=16.04;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2295,252,0 chrIV 1218612 . C T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5164;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.98;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4413,498,0 chrIV 1218666 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=24.32;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4645,507,0 chrIV 1219148 . T G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=138;Dels=0.01;FS=3.019;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.081;QD=22.99;ReadPosRankSum=2.377;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3206,363,0 chrIV 1219165 . T A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5877;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.55;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3439,378,0 chrIV 1219718 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.31;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2586,285,0 chrIV 1219835 . A G 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=6.198;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.904;QD=18.22;ReadPosRankSum=2.384;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:99:1418,159,0 chrIV 1219836 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.78;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1460,162,0 chrIV 1219901 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2997;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.51;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2218,249,0 chrIV 1219991 . T C 2383 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.70;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2416,273,0 chrIV 1220176 . G T 2207 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.55;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2240,249,0 chrIV 1220178 . A G 2252 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.08;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2285,255,0 chrIV 1220405 . C G 2958 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.66;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2991,336,0 chrIV 1221065 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.77;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1990,216,0 chrIV 1221343 . C G 3591.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.44;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3591,408,0 chrIV 1221387 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.197;QD=22.53;ReadPosRankSum=1.710;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3560,399,0 chrIV 1222049 . T C 3148 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.71;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3181,357,0 chrIV 1222054 . G C 3047 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.18;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3080,351,0 chrIV 1222135 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=158;Dels=0.00;FS=5.699;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.599;QD=20.74;ReadPosRankSum=1.710;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3277,369,0 chrIV 1222257 . T C 2556 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.42;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2589,297,0 chrIV 1222277 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=123;Dels=0.00;FS=3.032;HaplotypeScore=8.3359;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.494;QD=21.36;ReadPosRankSum=2.409;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2660,303,0 chrIV 1222392 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.96;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2108,228,0 chrIV 1222550 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.0329;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.35;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2737,306,0 chrIV 1222965 . T C 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=112;Dels=0.00;FS=5.682;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.518;QD=22.46;ReadPosRankSum=2.900;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:3,108:112:99:2548,288,0 chrIV 1223418 . T A 105.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.747;QD=13.16;ReadPosRankSum=0.747;SB=-5.430e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:15:138,15,0 chrIV 1223549 . A G 1104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.1979;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.668;QD=19.37;ReadPosRankSum=0.834;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,53:57:99:1137,111,0 chrIV 1223971 . C A 1497 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.70;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1530,168,0 chrIV 1224090 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.125;QD=23.14;ReadPosRankSum=2.343;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1653,189,0 chrIV 1224118 . A G 1693 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.51;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1726,192,0 chrIV 1224167 . A C 1428 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1461,165,0 chrIV 1224397 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1063,120,0 chrIV 1224464 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.41;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1050,120,0 chrIV 1224490 . C T 670 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=14.57;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:78:703,78,0 chrIV 1224501 . C T 524 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=13.79;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:63:557,63,0 chrIV 1224509 . A G 481 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=15.52;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:60:514,60,0 chrIV 1224626 . G C 909 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=14.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:62:99:942,108,0 chrIV 1224630 . C T 949 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.6899;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=14.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:982,108,0 chrIV 1224684 . G A 1229 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=17.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1262,141,0 chrIV 1224711 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.79;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1301,144,0 chrIV 1224871 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.13;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2624,285,0 chrIV 1224954 . T C 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.817;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.145;QD=23.43;ReadPosRankSum=1.673;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2821,327,0 chrIV 1225088 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2341,258,0 chrIV 1225292 . A G 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=3.653;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.620;QD=22.24;ReadPosRankSum=1.669;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2457,288,0 chrIV 1225658 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.48;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2634,288,0 chrIV 1225892 . C T 4271.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.99;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4271,453,0 chrIV 1226785 . T C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=142;Dels=0.00;FS=3.042;HaplotypeScore=10.8865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.632;QD=20.16;ReadPosRankSum=1.632;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,138:142:99:2896,330,0 chrIV 1227316 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.74;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4033,432,0 chrIV 1227339 . G A 3827.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.48;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3827,405,0 chrIV 1227777 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.84;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2020,219,0 chrIV 1227822 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.38;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2696,300,0 chrIV 1227904 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=5.103;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.095;QD=23.15;ReadPosRankSum=1.707;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3182,375,0 chrIV 1227967 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=147;Dels=0.00;FS=5.258;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.075;QD=24.44;ReadPosRankSum=2.939;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3592,399,0 chrIV 1228063 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.6584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.253;QD=23.65;ReadPosRankSum=0.253;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4067,456,0 chrIV 1228216 . G C 2622 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.7618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2655,306,0 chrIV 1228284 . A G 2403 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2436,279,0 chrIV 1228404 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2118,240,0 chrIV 1228691 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.39;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3707,408,0 chrIV 1228721 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.60;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3435,390,0 chrIV 1228793 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.1877;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.05;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3149,336,0 chrIV 1228853 . C G 3316.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0146;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;QD=21.12;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3316,381,0 chrIV 1229224 . C T 600 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=14.29;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:633,69,0 chrIV 1229236 . T G 737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.745;QD=16.75;ReadPosRankSum=2.468;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:3,41:44:87:770,87,0 chrIV 1229312 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.45;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1268,138,0 chrIV 1229313 . T C 1173 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.72;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1206,138,0 chrIV 1229336 . A G 882 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=18.00;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:915,105,0 chrIV 1229391 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.32;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1313,147,0 chrIV 1229404 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.75;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1589,168,0 chrIV 1229430 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.5743;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.36;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2376,267,0 chrIV 1229808 . A G 2990 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.18;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:3023,345,0 chrIV 1230069 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.14;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3056,336,0 chrIV 1230106 . T A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.02;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3303,363,0 chrIV 1230143 . C G 3433.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.51;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3433,384,0 chrIV 1230367 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.95;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3512,411,0 chrIV 1230579 . C A 2947 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.61;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2980,321,0 chrIV 1230613 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.0801;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.33;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3429,393,0 chrIV 1230646 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.66;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4057,477,0 chrIV 1230760 . A G 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=213;Dels=0.00;FS=9.104;HaplotypeScore=11.3097;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.386;QD=22.63;ReadPosRankSum=2.403;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4820,546,0 chrIV 1230859 . C T 6453.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.08;SB=-3.392e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6453,711,0 chrIV 1231036 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.20;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4729,525,0 chrIV 1231118 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.0065;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.01;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3911,429,0 chrIV 1231256 . T C 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.061;QD=22.78;ReadPosRankSum=1.571;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2995,336,0 chrIV 1231442 . C A 2708 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.55;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2741,303,0 chrIV 1231546 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.32;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2421,267,0 chrIV 1231627 . C A 2078 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=8.4404;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.98;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2111,234,0 chrIV 1231669 . A G 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=3.441;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.438;QD=23.25;ReadPosRankSum=1.667;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2521,285,0 chrIV 1231692 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.72;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2509,273,0 chrIV 1231776 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.96;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3819,420,0 chrIV 1232017 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3263,351,0 chrIV 1232377 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2650;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.613;QD=23.40;ReadPosRankSum=1.668;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3768,426,0 chrIV 1232436 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=190;Dels=0.00;FS=2.950;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.621;QD=22.08;ReadPosRankSum=2.410;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4196,486,0 chrIV 1232586 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3949,450,0 chrIV 1232650 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4340,483,0 chrIV 1232773 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=161;Dels=0.00;FS=3.480;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.022;QD=22.20;ReadPosRankSum=1.155;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,155:161:99:3574,393,0 chrIV 1232950 . A T 3083 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.36;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3116,339,0 chrIV 1233465 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=25.76;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3374,366,0 chrIV 1233488 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.49;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3204,363,0 chrIV 1233588 . C G 2303 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=19.68;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2336,261,0 chrIV 1233625 . A G 131.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;DP=144;Dels=0.00;FS=3.063;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.99;MQ0=0;MQRankSum=2.303;QD=0.91;ReadPosRankSum=4.869;SB=-1.568e+03 GT:AD:DP:GQ:PL 0/1:9,135:144:99:161,0,117 chrIV 1233634 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=17.09;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2460,264,0 chrIV 1233636 . A G 2424 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=16.49;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2457,279,0 chrIV 1233840 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=23.51;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3785,411,0 chrIV 1233967 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.30;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3177,339,0 chrIV 1234199 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.28;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2966,324,0 chrIV 1234313 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.444;DP=170;Dels=0.01;FS=11.456;HaplotypeScore=20.7694;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.084;QD=21.36;ReadPosRankSum=3.799;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:5,163:169:99:3632,411,0 chrIV 1234571 . T C 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=203;Dels=0.00;FS=6.669;HaplotypeScore=11.9488;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.517;QD=21.74;ReadPosRankSum=2.401;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4414,507,0 chrIV 1234670 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=155;Dels=0.00;FS=3.651;HaplotypeScore=15.7696;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.374;QD=19.17;ReadPosRankSum=1.687;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3004,351,0 chrIV 1235372 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.69;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3209,345,0 chrIV 1235582 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.96;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3219,354,0 chrIV 1235594 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.46;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3204,360,0 chrIV 1235870 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.1417;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.47;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3779,435,0 chrIV 1236152 . C G 2113 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.57;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2146,240,0 chrIV 1236284 . T C 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.059;QD=21.82;ReadPosRankSum=1.700;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2390,270,0 chrIV 1236598 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.14;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2881,315,0 chrIV 1236763 . C T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.5508;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.35;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4504,492,0 chrIV 1237229 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.1704;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.194;QD=22.26;ReadPosRankSum=2.921;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3150,357,0 chrIV 1237959 . T A 1266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=61;Dels=0.00;FS=10.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.328;QD=20.75;ReadPosRankSum=1.559;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1299,144,0 chrIV 1238041 . T A 1042 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.65;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1075,120,0 chrIV 1238230 . A G 1929 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.24;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1962,222,0 chrIV 1238249 . T C 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.577;QD=21.11;ReadPosRankSum=1.691;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1806,210,0 chrIV 1238791 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.98;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2311,252,0 chrIV 1238907 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:937,99,0 chrIV 1239074 . C T 382 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.22;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:45:415,45,0 chrIV 1239140 . G A 1079 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1112,117,0 chrIV 1239399 . T A 1828 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.05;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1861,201,0 chrIV 1240123 . G A 1475 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1508,162,0 chrIV 1240299 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3369,393,0 chrIV 1240626 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.01;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3566,396,0 chrIV 1240896 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=19.99;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1532,180,0 chrIV 1240908 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=19.18;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1510,174,0 chrIV 1240919 . C T 1376 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=18.35;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1409,153,0 chrIV 1240999 . C T 616 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=12.32;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:72:649,72,0 chrIV 1241008 . C G 642 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=12.59;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:75:675,75,0 chrIV 1241483 . A G 4005.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.0319;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.01;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4005,459,0 chrIV 1241510 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.2211;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.68;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3366,375,0 chrIV 1241519 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3385;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.28;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3232,357,0 chrIV 1242168 . T C 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6512;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.385;QD=16.47;ReadPosRankSum=1.604;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:939,111,0 chrIV 1242169 . A G 901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=55;Dels=0.00;FS=4.393;HaplotypeScore=4.6512;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.409;QD=16.38;ReadPosRankSum=1.417;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:934,108,0 chrIV 1242241 . T A 2620 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.83;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2653,288,0 chrIV 1242510 . A T 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.331;QD=20.14;ReadPosRankSum=1.709;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2994,336,0 chrIV 1242658 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=152;Dels=0.00;FS=5.265;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.006;QD=19.86;ReadPosRankSum=3.367;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3051,342,0 chrIV 1243063 . A T 856 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=16.78;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:889,96,0 chrIV 1245344 . C T 2608 filter AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=19.08;MQ0=68;QD=13.73;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:2641,297,0 chrIV 1245440 . A G 383.02 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.173;DP=130;Dels=0.00;FS=2.808;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=11.10;MQ0=94;MQRankSum=-0.794;QD=2.95;ReadPosRankSum=0.380;SB=-1.547e+02 GT:AD:DP:GQ:PL 1/1:44,85:130:26:416,26,0 chrIV 1245458 . C T 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;DP=140;Dels=0.00;FS=2.884;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=8.28;MQ0=123;MQRankSum=-3.367;QD=0.36;ReadPosRankSum=-1.055;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:61,79:140:80:80,0,124 chrIV 1245539 . C T 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.232;DP=174;Dels=0.00;FS=240.077;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=76;MQRankSum=-7.005;QD=0.40;ReadPosRankSum=2.163;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:98,75:174:99:100,0,1566 chrIV 1245593 . T C 1112 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.34;MQ0=31;QD=11.71;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1145,132,0 chrIV 1245635 . C T 686 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=39;QD=7.00;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:78:719,78,0 chrIV 1245641 . A G 622 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=41;QD=6.41;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:75:655,75,0 chrIV 1246191 . A T 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.300;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.8826;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.407;QD=21.95;ReadPosRankSum=0.760;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4303,462,0 chrIV 1246533 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.365;QD=22.55;ReadPosRankSum=1.671;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3878,441,0 chrIV 1246650 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.577;QD=21.28;ReadPosRankSum=1.632;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2969,339,0 chrIV 1246695 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.187;QD=23.82;ReadPosRankSum=0.316;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3788,403,0 chrIV 1246762 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.092;QD=22.74;ReadPosRankSum=1.709;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3457,396,0 chrIV 1246923 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3552,393,0 chrIV 1247011 . T G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.561;QD=24.47;ReadPosRankSum=1.660;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3548,396,0 chrIV 1247244 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.70;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3320,384,0 chrIV 1247388 . T A 2709 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.33;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2742,303,0 chrIV 1247397 . A T 2713 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.20;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2746,294,0 chrIV 1247703 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=185;Dels=0.00;FS=6.089;HaplotypeScore=11.8768;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.599;QD=22.18;ReadPosRankSum=2.940;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4103,471,0 chrIV 1248206 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.22;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3158,348,0 chrIV 1248319 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4269,486,0 chrIV 1248513 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2117,240,0 chrIV 1248582 . C A 2213 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=14.1676;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.58;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2246,243,0 chrIV 1248882 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.220;QD=22.00;ReadPosRankSum=1.671;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3740,420,0 chrIV 1248916 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.9357;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.19;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3921,444,0 chrIV 1249116 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.129;QD=22.10;ReadPosRankSum=1.714;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4199,486,0 chrIV 1249974 . T C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.569;QD=20.93;ReadPosRankSum=1.709;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3151,357,0 chrIV 1250091 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=154;Dels=0.00;FS=3.068;HaplotypeScore=8.4167;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.615;QD=19.61;ReadPosRankSum=1.641;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3053,348,0 chrIV 1250153 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.5707;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.711;QD=21.76;ReadPosRankSum=1.711;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3655,411,0 chrIV 1250194 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=175;Dels=0.00;FS=5.247;HaplotypeScore=15.6347;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.919;QD=22.43;ReadPosRankSum=3.379;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:4,170:175:99:3925,447,0 chrIV 1250522 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.921;HaplotypeScore=11.5480;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.287;QD=23.01;ReadPosRankSum=1.685;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3429,390,0 chrIV 1250566 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=178;Dels=0.00;FS=2.745;HaplotypeScore=23.7556;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.942;QD=21.93;ReadPosRankSum=2.422;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3904,441,0 chrIV 1250653 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.690;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=15.2354;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.669;QD=23.32;ReadPosRankSum=1.500;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3847,441,0 chrIV 1251183 . C T 5917.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=6.9740;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.33;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:5917,663,0 chrIV 1251845 . C G 3059 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.85;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3092,366,0 chrIV 1252116 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.555;QD=20.42;ReadPosRankSum=1.687;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3158,357,0 chrIV 1252149 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.12;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3804,420,0 chrIV 1252379 . C G 1896 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.55;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:88:99:1929,219,0 chrIV 1252668 . T G 2256 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2289,261,0 chrIV 1253334 . A G 5583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=243;Dels=0.00;FS=6.332;HaplotypeScore=15.7398;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.522;QD=22.98;ReadPosRankSum=2.389;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5583,633,0 chrIV 1253397 . T C 4807.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.15;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4807,549,0 chrIV 1253523 . A T 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=231;Dels=0.00;FS=3.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.993;QD=21.62;ReadPosRankSum=2.396;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4995,564,0 chrIV 1253589 . T A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.8935;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.63;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4132,450,0 chrIV 1253598 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.4475;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.44;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3413,384,0 chrIV 1253640 . T C 2970 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=18.68;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3003,348,0 chrIV 1253664 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=17.29;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2800,303,0 chrIV 1253679 . A G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-0.916;QD=15.79;ReadPosRankSum=1.644;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:2528,291,0 chrIV 1253694 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.993;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-1.180;QD=16.41;ReadPosRankSum=1.668;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2708,318,0 chrIV 1253763 . A G 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=140;Dels=0.00;FS=2.591;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.522;QD=19.75;ReadPosRankSum=2.905;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,134:140:99:2798,324,0 chrIV 1253814 . A T 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.9775;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.605;QD=20.13;ReadPosRankSum=0.545;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2529,279,0 chrIV 1253955 . A G 1928 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5616;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.09;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1961,225,0 chrIV 1253958 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5050;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=18.69;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2033,219,0 chrIV 1254185 . A T 5000.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6272;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.27;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5000,552,0 chrIV 1254292 . A G 5809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=13.1451;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.318;QD=21.44;ReadPosRankSum=1.706;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:1,267:271:99:5809,672,0 chrIV 1254508 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=13.53;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1481,165,0 chrIV 1254620 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1259,138,0 chrIV 1254831 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1526,174,0 chrIV 1256179 . T C 2832 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.60;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2865,327,0 chrIV 1256876 . T A 2924 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.15;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2957,327,0 chrIV 1257108 . T A 1664 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=18.70;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1697,183,0 chrIV 1257111 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=16.98;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1510,171,0 chrIV 1257232 . A G 2095 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.81;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2128,240,0 chrIV 1257343 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.04;FS=0.000;HaplotypeScore=11.2432;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.74;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2003,216,0 chrIV 1257439 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.29;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3248,366,0 chrIV 1257442 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.9203;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.66;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3377,366,0 chrIV 1257459 . A C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.1977;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.601;QD=18.12;ReadPosRankSum=-0.787;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2425,270,0 chrIV 1257868 . C T 4487.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.87;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4487,525,0 chrIV 1257873 . T C 4645.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.01;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4645,513,0 chrIV 1257906 . A T 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.6801;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.851;QD=21.57;ReadPosRankSum=2.419;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3451,387,0 chrIV 1258047 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.8135;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.35;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3308,366,0 chrIV 1258096 . T A 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.283;HaplotypeScore=9.8003;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.310;QD=19.90;ReadPosRankSum=1.702;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2322,261,0 chrIV 1258203 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.125;QD=20.22;ReadPosRankSum=1.704;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2561,297,0 chrIV 1258312 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.29;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3137,351,0 chrIV 1258318 . T C 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=154;Dels=0.00;FS=2.665;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.562;QD=19.07;ReadPosRankSum=2.417;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,149:154:99:2970,336,0 chrIV 1258432 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.319;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.516;QD=19.96;ReadPosRankSum=1.706;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2648,306,0 chrIV 1258442 . A G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=145;Dels=0.00;FS=6.620;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.731;QD=19.48;ReadPosRankSum=2.364;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2858,321,0 chrIV 1258657 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.175;QD=22.43;ReadPosRankSum=1.635;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3264,372,0 chrIV 1258685 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=4.371;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.561;QD=22.76;ReadPosRankSum=1.708;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3300,369,0 chrIV 1258767 . A G 2949 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.06;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2982,348,0 chrIV 1258923 . T C 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.7478;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.474;QD=22.92;ReadPosRankSum=1.715;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4607,522,0 chrIV 1258968 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6166;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.92;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4091,456,0 chrIV 1259896 . G A 2714 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.62;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2747,312,0 chrIV 1259960 . A T 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0191;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.602;QD=19.68;ReadPosRankSum=1.659;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1903,216,0 chrIV 1259970 . G C 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=1.506;QD=20.35;ReadPosRankSum=1.657;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:1946,216,0 chrIV 1259982 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.225;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=1.540;QD=19.36;ReadPosRankSum=1.187;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2124,220,0 chrIV 1260032 . T G 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=4.485;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.787;QD=18.53;ReadPosRankSum=1.706;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2516,294,0 chrIV 1260055 . A G 2970 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.62;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3003,348,0 chrIV 1260078 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.79;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3105,336,0 chrIV 1260779 . A G 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.202;QD=22.03;ReadPosRankSum=1.703;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2699,303,0 chrIV 1260837 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.10;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3350,366,0 chrIV 1261014 . G C 2815 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.07;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2848,321,0 chrIV 1261102 . A G 3136 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.02;FS=0.000;HaplotypeScore=14.1086;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.48;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3169,354,0 chrIV 1261105 . T C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=161;Dels=0.02;FS=4.007;HaplotypeScore=17.4680;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.688;QD=17.46;ReadPosRankSum=1.710;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:2844,336,0 chrIV 1261386 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.49;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3477,396,0 chrIV 1261418 . T A 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.188;QD=24.36;ReadPosRankSum=1.683;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3410,378,0 chrIV 1261452 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.66;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2801,312,0 chrIV 1262394 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=190;Dels=0.00;FS=5.839;HaplotypeScore=14.8095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.395;QD=21.42;ReadPosRankSum=2.930;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:3,183:190:99:4070,471,0 chrIV 1263265 . T G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.00;FS=2.954;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.704;QD=22.53;ReadPosRankSum=2.410;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2849,318,0 chrIV 1263883 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.3217;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.321;QD=22.54;ReadPosRankSum=1.849;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4124,421,0 chrIV 1264743 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=153;Dels=0.00;FS=7.209;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.586;QD=21.39;ReadPosRankSum=2.385;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3272,372,0 chrIV 1264751 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.10;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3425,381,0 chrIV 1264781 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.454;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.371;QD=20.03;ReadPosRankSum=1.708;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2917,330,0 chrIV 1264874 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5573;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.41;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3238,369,0 chrIV 1264886 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.6779;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.516;QD=19.65;ReadPosRankSum=1.686;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3000,345,0 chrIV 1264892 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.57;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2870,318,0 chrIV 1264956 . T C 3142 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.14;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3175,363,0 chrIV 1265063 . A T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.2612;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.41;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4214,468,0 chrIV 1265205 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2240;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.33;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3412,369,0 chrIV 1265261 . T A 3770.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.6028;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.49;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3770,420,0 chrIV 1265447 . C T 4405.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.75;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4405,480,0 chrIV 1265705 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.180;DP=166;Dels=0.00;FS=12.756;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.284;QD=21.92;ReadPosRankSum=3.298;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:4,159:166:99:3638,423,0 chrIV 1265783 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.50;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4189,459,0 chrIV 1265921 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3995,438,0 chrIV 1266546 . T C 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=3.441;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.229;QD=21.42;ReadPosRankSum=1.699;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2304,258,0 chrIV 1266696 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2535,285,0 chrIV 1266824 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.046;QD=20.88;ReadPosRankSum=1.709;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3207,369,0 chrIV 1266952 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2622,300,0 chrIV 1267153 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=21.75;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2208,240,0 chrIV 1267740 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=150;Dels=0.00;FS=2.776;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.355;QD=20.59;ReadPosRankSum=2.417;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3121,357,0 chrIV 1267818 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=3.249;HaplotypeScore=10.4215;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.674;QD=23.19;ReadPosRankSum=1.706;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3094,348,0 chrIV 1267926 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.68;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2916,330,0 chrIV 1267950 . T A 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.018;QD=20.85;ReadPosRankSum=1.626;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2764,312,0 chrIV 1267989 . A T 3047 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.24;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3080,339,0 chrIV 1268154 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.754;QD=21.14;ReadPosRankSum=1.706;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2802,327,0 chrIV 1268187 . C T 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=97;Dels=0.00;FS=3.291;HaplotypeScore=5.0950;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.119;QD=18.48;ReadPosRankSum=1.696;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1826,201,0 chrIV 1268229 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=15.55;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1883,213,0 chrIV 1268241 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=15.41;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1790,204,0 chrIV 1268315 . T C 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=5.682;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.796;QD=21.33;ReadPosRankSum=1.701;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2422,270,0 chrIV 1268439 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.55;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1972,225,0 chrIV 1268647 . C A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.23;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3457,366,0 chrIV 1269687 . T A 1030 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.07;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1063,117,0 chrIV 1269918 . C A 1928 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1961,213,0 chrIV 1270457 . A T 4989.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.6309;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.64;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4989,555,0 chrIV 1270902 . A G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=194;Dels=0.00;FS=2.977;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.665;QD=22.55;ReadPosRankSum=2.412;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4375,501,0 chrIV 1271755 . G C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3281,378,0 chrIV 1271812 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4087,438,0 chrIV 1271871 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.1708;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.51;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3260,369,0 chrIV 1271941 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.05;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3159,342,0 chrIV 1271999 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.025;QD=24.67;ReadPosRankSum=1.709;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3626,405,0 chrIV 1272147 . T G 1885 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.18;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1918,216,0 chrIV 1272164 . G A 1840 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.22;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1873,201,0 chrIV 1272229 . T C 1767 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.08;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1800,201,0 chrIV 1272726 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=179;Dels=0.00;FS=6.761;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.746;QD=20.49;ReadPosRankSum=-0.131;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3668,411,0 chrIV 1272748 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.472;QD=21.52;ReadPosRankSum=1.672;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3745,420,0 chrIV 1272781 . A T 3109 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.45;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3142,339,0 chrIV 1273219 . A T 2557 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.43;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2590,285,0 chrIV 1273224 . T C 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.364;QD=20.68;ReadPosRankSum=1.640;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2391,273,0 chrIV 1273268 . T C 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.398;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.9131;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.337;QD=18.71;ReadPosRankSum=-0.030;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2166,227,0 chrIV 1273337 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.141;QD=22.23;ReadPosRankSum=1.681;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3034,342,0 chrIV 1273367 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.14;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2645,294,0 chrIV 1273458 . A G 2297 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.74;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2330,261,0 chrIV 1273596 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.54;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2084,228,0 chrIV 1273706 . T G 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=3.136;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=22.90;ReadPosRankSum=1.666;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2438,276,0 chrIV 1273764 . A G 2217 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8808;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.74;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2250,252,0 chrIV 1273847 . G C 2707 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.54;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2740,309,0 chrIV 1273909 . T C 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=3.093;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.980;QD=20.23;ReadPosRankSum=1.699;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2198,252,0 chrIV 1273954 . T A 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=106;Dels=0.00;FS=2.381;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.781;QD=22.11;ReadPosRankSum=2.096;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2377,267,0 chrIV 1274423 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2015,228,0 chrIV 1274484 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2009,225,0 chrIV 1274743 . C T 2669 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2702,291,0 chrIV 1274867 . A G 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.534;QD=22.21;ReadPosRankSum=1.700;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2410,273,0 chrIV 1274988 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.95;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2528,270,0 chrIV 1275068 . A G 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.553;QD=18.21;ReadPosRankSum=1.695;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1745,204,0 chrIV 1275069 . A G 1761 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=18.73;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1794,204,0 chrIV 1275148 . T A 2422 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.88;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2455,273,0 chrIV 1275195 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.233;QD=22.62;ReadPosRankSum=1.701;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2567,291,0 chrIV 1275612 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.1756;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.47;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3474,387,0 chrIV 1275693 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.22;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3321,372,0 chrIV 1276002 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.65;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3204,369,0 chrIV 1276339 . C A 1772 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.95;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1805,198,0 chrIV 1276486 . A G 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=4.318;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.381;QD=23.92;ReadPosRankSum=1.663;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2449,282,0 chrIV 1276608 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.660;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.842;QD=18.45;ReadPosRankSum=1.708;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2708,306,0 chrIV 1276813 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=3.036;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.527;QD=22.81;ReadPosRankSum=2.419;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3673,426,0 chrIV 1277374 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.77;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3244,369,0 chrIV 1277377 . A T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.36;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3271,354,0 chrIV 1278056 . G A 5519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=245;Dels=0.00;FS=3.343;HaplotypeScore=17.7297;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.505;QD=22.53;ReadPosRankSum=1.434;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5519,627,0 chrIV 1278456 . C A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.49;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3309,369,0 chrIV 1278481 . C G 3167 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.04;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3200,372,0 chrIV 1278613 . A C 2850 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.43;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2883,336,0 chrIV 1278992 . G T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4669,528,0 chrIV 1279154 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.1606;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.55;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4097,450,0 chrIV 1279416 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=133.0133;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=16.51;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:2856,324,0 chrIV 1279680 . A C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.70;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3416,396,0 chrIV 1279875 . G A 4897.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.2525;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.99;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4897,528,0 chrIV 1280061 . T G 3970.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.85;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3970,468,0 chrIV 1280073 . G C 3930.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.2221;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.36;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3930,453,0 chrIV 1280121 . G A 4555.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.43;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4555,501,0 chrIV 1280319 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.45;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3165,351,0 chrIV 1280606 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=25.15;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3076,330,0 chrIV 1280622 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.06;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2901,327,0 chrIV 1281921 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.658;QD=23.76;ReadPosRankSum=1.688;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3754,426,0 chrIV 1282146 . T C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=8.372;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.423;QD=21.70;ReadPosRankSum=2.315;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3201,363,0 chrIV 1282243 . C A 3189 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.34;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3222,354,0 chrIV 1282320 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=2.874;HaplotypeScore=7.0311;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.728;QD=21.99;ReadPosRankSum=2.327;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2694,312,0 chrIV 1282347 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.17;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2697,306,0 chrIV 1283112 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2397,273,0 chrIV 1283387 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.0197;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.27;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4209,474,0 chrIV 1283592 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8856;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.38;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2875,309,0 chrIV 1283766 . G T 1332 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.14;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1365,156,0 chrIV 1283911 . C A 253 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.00;SB=-1.069e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:33:286,33,0 chrIV 1283930 . C A 282 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.69;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:36:315,36,0 chrIV 1284111 . T A 1211 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1244,144,0 chrIV 1284927 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.18;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2584,285,0 chrIV 1285035 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.94;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4190,459,0 chrIV 1285056 . T C 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.426;QD=21.70;ReadPosRankSum=1.694;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3928,441,0 chrIV 1285139 . A C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.424;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.697;QD=22.79;ReadPosRankSum=1.710;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3532,405,0 chrIV 1285752 . A T 2371 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.80;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2404,264,0 chrIV 1285878 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=153;Dels=0.00;FS=2.585;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.053;QD=22.78;ReadPosRankSum=2.914;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3485,396,0 chrIV 1286166 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.63;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3288,357,0 chrIV 1286229 . G T 2988 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3021,330,0 chrIV 1286541 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2009,225,0 chrIV 1286766 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3021,348,0 chrIV 1286838 . T G 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.413;QD=24.03;ReadPosRankSum=1.709;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3653,423,0 chrIV 1286871 . C A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.08;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3623,423,0 chrIV 1286949 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=166;Dels=0.00;FS=6.083;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.515;QD=23.43;ReadPosRankSum=2.885;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3890,441,0 chrIV 1287125 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=181;Dels=0.00;FS=3.283;HaplotypeScore=9.2199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.947;QD=22.59;ReadPosRankSum=1.713;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4089,462,0 chrIV 1287842 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=167;Dels=0.00;FS=3.010;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.302;QD=21.43;ReadPosRankSum=2.391;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3578,408,0 chrIV 1288090 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.07;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2903,330,0 chrIV 1288209 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3408,369,0 chrIV 1288775 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.0933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3266,363,0 chrIV 1289394 . C T 3019 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.53;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3052,336,0 chrIV 1289490 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.79;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2790,300,0 chrIV 1289885 . T A 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=145;Dels=0.00;FS=2.445;HaplotypeScore=13.2471;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-2.160;QD=20.61;ReadPosRankSum=2.063;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3021,330,0 chrIV 1289939 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.03;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4101,468,0 chrIV 1289972 . C T 4517.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.81;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4517,489,0 chrIV 1290308 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.9534;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.19;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3270,363,0 chrIV 1290507 . A T 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=153;Dels=0.00;FS=9.918;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.086;QD=23.75;ReadPosRankSum=2.915;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3634,396,0 chrIV 1290722 . G A 4733.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4733,510,0 chrIV 1290886 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.10;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2746,306,0 chrIV 1291177 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.0320;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.08;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1309,138,0 chrIV 1291642 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.78;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3720,408,0 chrIV 1291654 . T C 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=2.770;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.665;QD=17.56;ReadPosRankSum=2.376;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3018,348,0 chrIV 1291676 . C T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=18.55;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3321,369,0 chrIV 1291853 . C A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.5359;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.63;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4175,462,0 chrIV 1291869 . G C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.2676;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.46;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3834,438,0 chrIV 1292138 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.14;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3266,357,0 chrIV 1292208 . T A 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.999;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5034;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.636;QD=17.43;ReadPosRankSum=3.171;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:5,105:110:99:1950,219,0 chrIV 1292212 . C T 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=109;Dels=0.00;FS=2.599;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.365;QD=18.02;ReadPosRankSum=2.898;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:3,105:109:99:1997,222,0 chrIV 1292515 . G C 2787 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.42;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2820,324,0 chrIV 1292666 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;DP=167;Dels=0.00;FS=4.098;HaplotypeScore=7.2496;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.255;QD=22.22;ReadPosRankSum=-0.840;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3710,416,0 chrIV 1292703 . A C 4235.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.65;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4235,471,0 chrIV 1292723 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=175;Dels=0.00;FS=3.028;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.597;QD=21.30;ReadPosRankSum=2.295;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3728,426,0 chrIV 1293200 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=4.248;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.097;QD=20.71;ReadPosRankSum=1.704;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2622,300,0 chrIV 1293205 . T A 2529 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9595;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.40;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2562,285,0 chrIV 1293240 . G T 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.281;QD=20.70;ReadPosRankSum=0.268;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2579,266,0 chrIV 1293368 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.57;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2665,300,0 chrIV 1293471 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.66;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2697,306,0 chrIV 1293519 . A T 2776 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.374;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=-0.847;QD=20.26;ReadPosRankSum=1.707;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2809,309,0 chrIV 1293522 . C T 2707 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=18.80;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2740,306,0 chrIV 1293527 . G T 2797 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=18.28;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2830,309,0 chrIV 1293602 . C T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.3021;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.65;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4150,465,0 chrIV 1293708 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.39;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3359,378,0 chrIV 1293777 . A C 4640.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.52;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4640,519,0 chrIV 1293998 . C T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.72;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5043,546,0 chrIV 1294207 . T C 3974.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.20;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3974,456,0 chrIV 1294559 . T A 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=3.947;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.086;QD=19.66;ReadPosRankSum=1.655;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2668,291,0 chrIV 1294560 . T A 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.996;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.716;QD=20.08;ReadPosRankSum=1.602;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2704,288,0 chrIV 1294582 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=3.005;HaplotypeScore=4.3896;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.693;QD=20.19;ReadPosRankSum=2.411;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2577,294,0 chrIV 1295031 . T A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.50;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4483,489,0 chrIV 1295100 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.2672;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.55;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3750,423,0 chrIV 1295106 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=3.757;HaplotypeScore=3.5246;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.010;QD=20.96;ReadPosRankSum=1.692;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3585,408,0 chrIV 1295438 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.25;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2150,243,0 chrIV 1295451 . A G 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.637;QD=18.08;ReadPosRankSum=2.385;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2094,240,0 chrIV 1295582 . T G 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=95;Dels=0.00;FS=2.837;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=2.370;QD=23.45;ReadPosRankSum=2.397;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:2,91:95:99:2261,252,0 chrIV 1295980 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.4309;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.30;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4059,444,0 chrIV 1296035 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.32;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3710,399,0 chrIV 1296045 . T A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.62;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3361,366,0 chrIV 1296195 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.53;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3112,354,0 chrIV 1296219 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.38;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3143,342,0 chrIV 1296388 . A T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.53;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3247,354,0 chrIV 1296525 . T C 2324 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.01;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2357,267,0 chrIV 1296732 . C A 100.26 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=12.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:133,15,0 chrIV 1297076 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7386;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.351;QD=22.19;ReadPosRankSum=1.708;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3228,366,0 chrIV 1297562 . G C 2801 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2834,312,0 chrIV 1297645 . T C 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.083;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.617;QD=19.10;ReadPosRankSum=1.703;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2344,267,0 chrIV 1297665 . G T 2493 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.18;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2526,273,0 chrIV 1297796 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.94;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3841,435,0 chrIV 1297847 . T G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.450;QD=22.17;ReadPosRankSum=1.706;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3048,348,0 chrIV 1297890 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.05;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4056,447,0 chrIV 1297994 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.7850;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.51;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3961,450,0 chrIV 1298024 . T C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.283;QD=21.17;ReadPosRankSum=1.708;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3061,342,0 chrIV 1298054 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.06;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2813,306,0 chrIV 1298162 . A C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=161;Dels=0.00;FS=2.857;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.274;QD=23.21;ReadPosRankSum=2.373;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3736,417,0 chrIV 1298210 . A G 2826 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2744;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=19.36;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2859,324,0 chrIV 1298219 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.93;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2702,306,0 chrIV 1298337 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.52;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2874,324,0 chrIV 1298424 . T A 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.469;QD=23.57;ReadPosRankSum=1.712;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4030,441,0 chrIV 1298594 . A C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.77;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4255,486,0 chrIV 1298614 . T C 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.064;DP=201;Dels=0.00;FS=18.937;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.147;QD=21.14;ReadPosRankSum=4.122;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:6,194:201:99:4249,495,0 chrIV 1298688 . A G 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=3.212;HaplotypeScore=13.3725;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.748;QD=23.36;ReadPosRankSum=1.712;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4135,456,0 chrIV 1298829 . C A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.8670;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.30;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4077,444,0 chrIV 1298872 . T G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=7.037;HaplotypeScore=11.8565;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.997;QD=21.84;ReadPosRankSum=2.403;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3472,399,0 chrIV 1298950 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=3.031;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.496;QD=20.27;ReadPosRankSum=2.361;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3405,387,0 chrIV 1298958 . C T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.52;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3616,390,0 chrIV 1299032 . A G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=148;Dels=0.00;FS=6.108;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.585;QD=19.75;ReadPosRankSum=2.898;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:2956,339,0 chrIV 1299052 . T C 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.734;QD=20.12;ReadPosRankSum=2.414;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2830,327,0 chrIV 1299086 . T C 2705 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.65;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2738,309,0 chrIV 1299137 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=7.611;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.113;QD=22.18;ReadPosRankSum=2.397;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3182,363,0 chrIV 1299214 . A G 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.330;QD=22.07;ReadPosRankSum=1.682;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3101,354,0 chrIV 1299598 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.34;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2490,279,0 chrIV 1300045 . A C 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.906;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.411;QD=23.82;ReadPosRankSum=1.703;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2867,321,0 chrIV 1300146 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=3.045;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.716;QD=22.31;ReadPosRankSum=2.389;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2755,321,0 chrIV 1300226 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6529;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.40;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3696,420,0 chrIV 1300388 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=177;Dels=0.00;FS=6.349;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.509;QD=21.71;ReadPosRankSum=2.394;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3843,438,0 chrIV 1300582 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.08;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3564,384,0 chrIV 1300834 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.63;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3463,390,0 chrIV 1301253 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6046;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.79;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3877,435,0 chrIV 1301384 . G C 2416 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.64;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2449,270,0 chrIV 1301390 . T C 2388 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.23;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2421,279,0 chrIV 1301405 . A C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.649;DP=134;Dels=0.00;FS=11.957;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.030;QD=18.24;ReadPosRankSum=3.708;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:5,128:134:99:2477,282,0 chrIV 1301474 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.04;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3636,402,0 chrIV 1302530 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1712,204,0 chrIV 1302701 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.44;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1062,120,0 chrIV 1302786 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1716,198,0 chrIV 1303036 . A G 2246 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.24;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,97:101:99:2279,264,0 chrIV 1303188 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.749;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.640;QD=19.16;ReadPosRankSum=3.575;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:5,158:163:99:3156,363,0 chrIV 1303306 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4310,489,0 chrIV 1303572 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.98;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2791,300,0 chrIV 1303677 . G T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.17;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3988,429,0 chrIV 1303716 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.32;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3591,405,0 chrIV 1304109 . T C 3037 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.66;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3070,354,0 chrIV 1304204 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.5970;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.350;QD=20.03;ReadPosRankSum=1.605;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2777,309,0 chrIV 1304580 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3226,351,0 chrIV 1304837 . A G 2252 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.52;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2285,258,0 chrIV 1304955 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=20.69;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3013,330,0 chrIV 1304961 . A G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=144;Dels=0.00;FS=2.681;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-0.145;QD=18.83;ReadPosRankSum=2.415;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2744,309,0 chrIV 1304979 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=20.08;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2583,279,0 chrIV 1305003 . T A 2194 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=17.69;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2227,246,0 chrIV 1305020 . A G 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=110;Dels=0.00;FS=2.748;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-1.208;QD=15.77;ReadPosRankSum=2.337;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:1768,201,0 chrIV 1305400 . T G 1516 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=137.1235;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.95;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1549,177,0 chrIV 1305402 . A G 1507 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=137.9121;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.83;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1540,174,0 chrIV 1305484 . T C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.991;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.072;QD=19.69;ReadPosRankSum=0.989;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:2,84:88:99:1766,162,0 chrIV 1305496 . A G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=2.994;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-2.423;QD=20.76;ReadPosRankSum=2.396;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1922,222,0 chrIV 1305624 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.962;QD=24.72;ReadPosRankSum=1.694;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2258,252,0 chrIV 1305723 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=21.60;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1610,186,0 chrIV 1305738 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=23.46;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1816,195,0 chrIV 1305752 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.03;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1707,195,0 chrIV 1306195 . T G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.624;QD=22.32;ReadPosRankSum=1.704;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2845,318,0 chrIV 1306509 . G T 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=3.989;HaplotypeScore=18.4150;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.541;QD=21.45;ReadPosRankSum=0.715;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:4719,525,0 chrIV 1306661 . A C 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.796;QD=22.11;ReadPosRankSum=1.683;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4688,534,0 chrIV 1306774 . T A 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=4.295;HaplotypeScore=11.3128;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.276;QD=20.64;ReadPosRankSum=1.665;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4272,474,0 chrIV 1306792 . A T 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=187;Dels=0.00;FS=8.403;HaplotypeScore=8.9764;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.873;QD=21.56;ReadPosRankSum=3.413;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:4032,432,0 chrIV 1306911 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.05;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3684,399,0 chrIV 1306938 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.19;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3730,432,0 chrIV 1306979 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0092;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.12;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3738,420,0 chrIV 1307338 . G A 4542.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.60;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4542,504,0 chrIV 1307631 . C T 6511.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=22.6726;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.44;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:0,351:353:99:6511,711,0 chrIV 1307667 . G A 579.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.818;DP=421;Dels=0.00;FS=40.018;HaplotypeScore=28.0335;MLEAC=1;MLEAF=0.500;MQ=46.91;MQ0=1;MQRankSum=-5.474;QD=1.38;ReadPosRankSum=-12.507;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:338,80:421:99:609,0,4343 chrIV 1307848 . A G 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DP=29;Dels=0.00;FS=9.234;HaplotypeScore=10.0639;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=11;MQRankSum=2.445;QD=0.86;ReadPosRankSum=-0.634;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:22,7:29:55:55,0,88 chrIV 1307856 . A G 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;DP=33;Dels=0.00;FS=19.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.22;MQ0=11;MQRankSum=3.657;QD=1.85;ReadPosRankSum=-2.861;SB=0.406 GT:AD:DP:GQ:PL 0/1:20,13:33:77:91,0,77 chrIV 1307877 . G A 156.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.589;DP=44;Dels=0.00;FS=18.612;HaplotypeScore=3.8844;MLEAC=1;MLEAF=0.500;MQ=22.85;MQ0=12;MQRankSum=3.484;QD=3.55;ReadPosRankSum=3.873;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:23,20:44:90:186,0,90 chrIV 1307879 . C T 132.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;DP=45;Dels=0.00;FS=14.352;HaplotypeScore=3.8844;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=13;MQRankSum=3.134;QD=2.93;ReadPosRankSum=3.452;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,23:45:73:162,0,73 chrIV 1307883 . T C 264.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.913;DP=76;Dels=0.00;FS=100.624;HaplotypeScore=14.6185;MLEAC=1;MLEAF=0.500;MQ=20.57;MQ0=16;MQRankSum=4.378;QD=3.47;ReadPosRankSum=1.964;SB=0.061 GT:AD:DP:GQ:PL 0/1:38,38:76:35:294,0,35 chrIV 1307982 . G A 324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DP=200;Dels=0.00;FS=148.894;HaplotypeScore=29.1207;MLEAC=1;MLEAF=0.500;MQ=16.84;MQ0=64;MQRankSum=3.166;QD=1.62;ReadPosRankSum=-3.612;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,104:200:85:354,0,85 chrIV 1308135 . C T 119.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.99;MQ0=40;MQRankSum=0.231;QD=1.70;ReadPosRankSum=1.271;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:2,68:70:21:152,21,0 chrIV 1308347 . C T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=20.77;MQ0=56;MQRankSum=0.324;QD=0.14;ReadPosRankSum=-5.007;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:172,52:224:61:61,0,1485 chrIV 1308352 . A G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.635;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.82;MQ0=53;MQRankSum=0.648;QD=0.17;ReadPosRankSum=-0.739;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:186,58:244:71:71,0,1626 chrIV 1308360 . A G 155.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.376;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=46;MQRankSum=2.981;QD=0.57;ReadPosRankSum=2.582;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:193,81:274:99:185,0,1708 chrIV 1308381 . G A 577.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.223;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=19;MQRankSum=4.310;QD=2.35;ReadPosRankSum=3.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,125:246:99:607,0,1033 chrIV 1308383 . C T 568.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.605;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=1;MLEAF=0.500;MQ=24.37;MQ0=17;MQRankSum=4.961;QD=2.35;ReadPosRankSum=3.048;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,124:242:99:598,0,1083 chrIV 1308387 . C T 626.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.333;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.4417;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=12;MQRankSum=-5.370;QD=2.69;ReadPosRankSum=0.907;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,97:233:99:656,0,655 chrIV 1308471 . C T 2596 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.953;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.7903;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=2;MQRankSum=-3.513;QD=16.12;ReadPosRankSum=4.056;SB=3.00 GT:AD:DP:GQ:PL 1/1:38,123:161:88:2629,88,0 chrIV 1308570 . G A 6900.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=409;Dels=0.00;FS=42.996;HaplotypeScore=9.6165;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=22;MQRankSum=4.519;QD=16.87;ReadPosRankSum=-1.046;SB=-4.388e+03 GT:AD:DP:GQ:PL 1/1:25,382:409:99:6900,663,0 chrIV 1309620 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.1890;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.40;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2986,327,0 chrIV 1310395 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3318,375,0 chrIV 1310837 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1846,198,0 chrIV 1311566 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.06;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3574,387,0 chrIV 1311594 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5598;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.52;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3446,375,0 chrIV 1311671 . T C 2506 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.78;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2539,291,0 chrIV 1311768 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.560;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.690;QD=21.68;ReadPosRankSum=1.684;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3133,354,0 chrIV 1311784 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=19.95;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2586,279,0 chrIV 1311794 . A G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.732;QD=18.42;ReadPosRankSum=1.703;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2244,255,0 chrIV 1311941 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=4.161;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.405;QD=23.94;ReadPosRankSum=1.667;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3854,435,0 chrIV 1311986 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.95;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4200,483,0 chrIV 1312365 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.87;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3412,387,0 chrIV 1312462 . A C 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.182;QD=24.27;ReadPosRankSum=1.713;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4418,498,0 chrIV 1313415 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.576;QD=21.85;ReadPosRankSum=2.821;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:3,104:108:99:2393,276,0 chrIV 1313545 . T A 1903 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1936,207,0 chrIV 1313893 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.7933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.635;QD=22.62;ReadPosRankSum=1.693;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:4094,471,0 chrIV 1314295 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.49;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4320,492,0 chrIV 1314298 . G A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.81;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4246,483,0 chrIV 1314589 . T C 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=208;Dels=0.00;FS=6.047;HaplotypeScore=12.7348;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.597;QD=22.12;ReadPosRankSum=2.102;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4600,531,0 chrIV 1315113 . G C 2465 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.11;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2498,285,0 chrIV 1315127 . T C 2600 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.26;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2633,297,0 chrIV 1315208 . A G 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.883;QD=16.74;ReadPosRankSum=1.698;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1740,198,0 chrIV 1315285 . T G 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=93;Dels=0.00;FS=1.895;HaplotypeScore=7.0043;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.843;QD=12.91;ReadPosRankSum=2.904;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:5,88:93:99:1234,141,0 chrIV 1315286 . G T 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;DP=94;Dels=0.00;FS=2.426;HaplotypeScore=7.0043;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.725;QD=12.96;ReadPosRankSum=1.649;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:3,89:94:99:1251,141,0 chrIV 1315764 . G C 2645 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2678,306,0 chrIV 1316569 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.8218;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.94;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3774,405,0 chrIV 1316659 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.838;QD=22.44;ReadPosRankSum=1.648;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2815,321,0 chrIV 1317697 . A T 6076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=273;Dels=0.00;FS=3.013;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.236;QD=22.26;ReadPosRankSum=2.414;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:6076,684,0 chrIV 1317903 . G C 4514.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.80;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4514,516,0 chrIV 1317904 . G T 4622.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.91;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4622,525,0 chrIV 1317986 . A T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.34;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4644,513,0 chrIV 1318030 . A C 4535.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.14;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4535,516,0 chrIV 1318331 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.11;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4114,456,0 chrIV 1318378 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.5794;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.78;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4578,498,0 chrIV 1318539 . A G 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.165;QD=21.84;ReadPosRankSum=1.697;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4346,504,0 chrIV 1318597 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.2904;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.53;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4483,507,0 chrIV 1318646 . A G 4550.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.9968;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.56;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4550,539,0 chrIV 1318845 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0836;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.25;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3423,387,0 chrIV 1319624 . T C 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=150;Dels=0.00;FS=6.849;HaplotypeScore=10.1791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.328;QD=22.35;ReadPosRankSum=2.351;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3352,381,0 chrIV 1319772 . T A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.48;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3357,360,0 chrIV 1319945 . T A 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.584;QD=25.30;ReadPosRankSum=1.674;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4504,480,0 chrIV 1320297 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.04;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3747,408,0 chrIV 1320420 . A C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.905;QD=22.34;ReadPosRankSum=1.710;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3485,396,0 chrIV 1320570 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.86;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2591,291,0 chrIV 1320636 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.76;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2384,258,0 chrIV 1320639 . A C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.785;QD=18.66;ReadPosRankSum=1.703;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2235,258,0 chrIV 1321125 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.542;QD=23.63;ReadPosRankSum=1.706;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3128,354,0 chrIV 1321143 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.64;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2522,273,0 chrIV 1321506 . A G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=9.928;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.437;QD=23.58;ReadPosRankSum=2.397;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2226,255,0 chrIV 1322306 . A G 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.291;QD=20.84;ReadPosRankSum=1.669;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2325,264,0 chrIV 1322553 . A G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=3.310;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.423;QD=22.59;ReadPosRankSum=1.694;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2089,237,0 chrIV 1323143 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3360,375,0 chrIV 1323397 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3208,351,0 chrIV 1323610 . G T 2773 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=24.11;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2806,306,0 chrIV 1323775 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.7278;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.79;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2590,282,0 chrIV 1323786 . C A 2501 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.67;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2534,282,0 chrIV 1323848 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.83;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3157,339,0 chrIV 1323868 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=169;Dels=0.00;FS=6.061;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.661;QD=19.81;ReadPosRankSum=2.959;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3348,378,0 chrIV 1324123 . T C 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.131;QD=21.32;ReadPosRankSum=1.626;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4179,486,0 chrIV 1324144 . G C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.14;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,184:190:99:4016,459,0 chrIV 1324183 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.91;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3681,411,0 chrIV 1324318 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.92;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2460,273,0 chrIV 1324832 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6375;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.67;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4104,447,0 chrIV 1324886 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=18.9684;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.47;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4044,462,0 chrIV 1325344 . G T 2459 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.67;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2492,285,0 chrIV 1325346 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.37;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2620,279,0 chrIV 1325849 . A G 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.000;QD=22.37;ReadPosRankSum=1.656;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3075,351,0 chrIV 1325953 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3004,327,0 chrIV 1326057 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.36;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2694,285,0 chrIV 1326110 . G C 2106 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.06;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2139,246,0 chrIV 1326543 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3275,372,0 chrIV 1326851 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.76;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2901,315,0 chrIV 1326881 . G C 2996 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.95;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3029,351,0 chrIV 1326959 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.93;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3103,348,0 chrIV 1327253 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2994,339,0 chrIV 1327348 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.10;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2080,234,0 chrIV 1327703 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=161;Dels=0.00;FS=6.620;HaplotypeScore=12.1859;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.096;QD=22.89;ReadPosRankSum=2.387;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,156:161:99:3685,414,0 chrIV 1327736 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.15;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3334,369,0 chrIV 1328084 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.41;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2880,324,0 chrIV 1328369 . A T 2281 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.15;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2314,261,0 chrIV 1329703 . A G 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=7.077;HaplotypeScore=10.5907;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.133;QD=20.08;ReadPosRankSum=2.401;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2061,234,0 chrIV 1330118 . A C 1796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.613;QD=20.64;ReadPosRankSum=1.692;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1829,210,0 chrIV 1330557 . T A 2050 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.50;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2083,231,0 chrIV 1330559 . C A 2027 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.07;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2060,234,0 chrIV 1330650 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.178;QD=23.51;ReadPosRankSum=1.663;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2384,273,0 chrIV 1330864 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.02;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.22;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2091,228,0 chrIV 1330877 . G T 1801 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=20.01;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1834,201,0 chrIV 1330885 . T C 1599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.279;QD=17.19;ReadPosRankSum=1.658;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1632,192,0 chrIV 1330934 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.54;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2416,264,0 chrIV 1331029 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.9122;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.92;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2623,285,0 chrIV 1331031 . G T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;DP=111;Dels=0.00;FS=88.973;HaplotypeScore=14.7443;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=0.404;QD=0.20;ReadPosRankSum=-2.781;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,21:111:52:52,0,1620 chrIV 1331329 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.421;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.222;QD=22.61;ReadPosRankSum=0.289;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3550,390,0 chrIV 1331502 . G A 4726.01 SnpCluster AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=20.73;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4726,522,0 chrIV 1331503 . G A 4766.01 SnpCluster AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.63;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,227:231:99:4766,519,0 chrIV 1331509 . T A 4628.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.335;QD=19.05;ReadPosRankSum=1.718;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:4628,510,0 chrIV 1331692 . T C 6046.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.29;SB=-3.648e+03 GT:AD:DP:GQ:PL 1/1:0,298:298:99:6046,699,0 chrIV 1331698 . T A 6331.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.53;SB=-3.746e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:6331,696,0 chrIV 1331710 . A C 5969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=301;Dels=0.00;FS=5.779;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-0.297;QD=19.83;ReadPosRankSum=2.897;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:3,298:301:99:5969,690,0 chrIV 1331838 . G T 5100.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.57;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5100,567,0 chrIV 1332047 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3851;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.54;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3022,327,0 chrIV 1332400 . G T 2276 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2309,258,0 chrIV 1332564 . T A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.96;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3785,426,0 chrIV 1332781 . A G 3020 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3053,345,0 chrIV 1332857 . A G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=2.655;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.036;QD=22.35;ReadPosRankSum=2.401;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2290,264,0 chrIV 1333408 . C T 5690.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.6558;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.53;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5690,618,0 chrIV 1333527 . A G 5381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=225;Dels=0.00;FS=3.351;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.532;QD=23.92;ReadPosRankSum=1.717;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5381,600,0 chrIV 1333678 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4027,447,0 chrIV 1333799 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.3707;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.87;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3705,405,0 chrIV 1333898 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=162;Dels=0.00;FS=7.324;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.827;QD=22.44;ReadPosRankSum=2.419;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3636,402,0 chrIV 1334061 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.633;QD=22.83;ReadPosRankSum=1.711;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3813,420,0 chrIV 1334142 . A G 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=19.7874;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.730;QD=21.56;ReadPosRankSum=1.681;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4420,504,0 chrIV 1334337 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=22.2610;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.96;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4765,534,0 chrIV 1334389 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.64;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4241,468,0 chrIV 1334478 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=238;Dels=0.00;FS=3.373;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.840;QD=16.24;ReadPosRankSum=1.703;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:3866,441,0 chrIV 1334484 . A T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=16.64;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:3976,423,0 chrIV 1334981 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5453;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.25;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3441,384,0 chrIV 1335206 . C G 4113.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.7158;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.87;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4113,477,0 chrIV 1335398 . C A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.1914;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.71;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4043,453,0 chrIV 1335831 . T G 5642.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=16.9396;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.90;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:1,266:270:99:5642,651,0 chrIV 1337219 . T C 960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.578;QD=21.33;ReadPosRankSum=1.655;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:993,114,0 chrIV 1337684 . C G 5077.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.51;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,231:236:99:5077,594,0 chrIV 1337715 . T C 5208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.716;DP=251;Dels=0.00;FS=7.961;HaplotypeScore=16.7021;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-2.167;QD=20.75;ReadPosRankSum=3.754;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:5,243:251:99:5208,591,0 chrIV 1337910 . T C 7140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=328;Dels=0.00;FS=3.010;HaplotypeScore=23.8112;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.352;QD=21.77;ReadPosRankSum=2.412;SB=-3.704e+03 GT:AD:DP:GQ:PL 1/1:2,322:328:99:7140,825,0 chrIV 1338084 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.32;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4104,480,0 chrIV 1338262 . G T 2045 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=18.59;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2078,222,0 chrIV 1338269 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=14.79;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1896,207,0 chrIV 1338288 . T C 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=151;Dels=0.00;FS=2.422;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;MQRankSum=0.411;QD=10.17;ReadPosRankSum=3.366;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:4,147:151:99:1569,177,0 chrIV 1338291 . A G 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=6.081;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.61;MQ0=0;MQRankSum=-0.214;QD=9.59;ReadPosRankSum=1.708;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:99:1433,165,0 chrIV 1338321 . T G 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;MQRankSum=1.068;QD=6.63;ReadPosRankSum=2.396;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:2,135:137:99:941,108,0 chrIV 1338322 . C T 955 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=6.97;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:988,108,0 chrIV 1338366 . T C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-1.295;QD=13.84;ReadPosRankSum=1.665;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1472,171,0 chrIV 1338448 . A G 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=215;Dels=0.00;FS=3.348;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.534;QD=24.12;ReadPosRankSum=1.700;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:5185,579,0 chrIV 1338475 . T A 5789.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=24.43;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5789,630,0 chrIV 1338570 . T A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.90;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3801,426,0 chrIV 1338585 . A T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.20;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3413,387,0 chrIV 1338669 . T C 4488.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.1030;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4488,507,0 chrIV 1339080 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=145;Dels=0.00;FS=3.041;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.118;QD=22.11;ReadPosRankSum=2.415;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3239,363,0 chrIV 1339103 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.97;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3109,339,0 chrIV 1339488 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=22.43;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2343,255,0 chrIV 1340160 . G T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=24.36;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5311,576,0 chrIV 1340287 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5920;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.101;QD=22.13;ReadPosRankSum=2.336;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:3872,444,0 chrIV 1340653 . A C 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.993;QD=21.19;ReadPosRankSum=2.413;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2894,330,0 chrIV 1340844 . C T 2147 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=23.59;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2180,237,0 chrIV 1341046 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=45.2481;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.37;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1527,165,0 chrIV 1341209 . A G 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=3.399;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=0.148;QD=22.83;ReadPosRankSum=1.683;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1631,183,0 chrIV 1341251 . A C 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.713;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=-0.458;QD=22.82;ReadPosRankSum=1.692;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2018,225,0 chrIV 1341287 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=21.89;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2200,252,0 chrIV 1341311 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=23.31;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2317,261,0 chrIV 1341396 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=20.34;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1396,162,0 chrIV 1341403 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=21.98;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1286,147,0 chrIV 1341413 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=21.33;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1249,147,0 chrIV 1341415 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=20.67;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1232,144,0 chrIV 1341472 . G T 1264 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;QD=21.07;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1297,144,0 chrIV 1341474 . A T 1200 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;QD=20.00;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1233,141,0 chrIV 1341496 . T C 1399 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;QD=18.65;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1432,165,0 chrIV 1341520 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=3.680;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=2.69;ReadPosRankSum=0.742;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,6:7:6:50,6,0 chrIV 1341564 . A C 1157 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=10.06;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1190,138,0 chrIV 1341577 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=11.03;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1334,147,0 chrIV 1341684 . C G 875 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=11.99;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:908,102,0 chrIV 1341693 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=12.29;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1090,126,0 chrIV 1341749 . T G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.919;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;MQRankSum=-0.908;QD=19.17;ReadPosRankSum=1.708;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2793,327,0 chrIV 1341794 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=22.89;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3593,390,0 chrIV 1341826 . G C 3120 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=22.77;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3153,360,0 chrIV 1342306 . G T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.08;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3775,408,0 chrIV 1342433 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.18;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3500,384,0 chrIV 1342594 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.33;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2824,309,0 chrIV 1342632 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.71;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2735,297,0 chrIV 1342654 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.22;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3029,330,0 chrIV 1342723 . T G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.807;QD=22.79;ReadPosRankSum=2.395;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3110,366,0 chrIV 1342837 . G T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=17.0480;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.02;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3891,432,0 chrIV 1342926 . C T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=18.0904;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.11;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3539,381,0 chrIV 1342986 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.18;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3771,417,0 chrIV 1343168 . A T 3092 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.41;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3125,339,0 chrIV 1343249 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2376,258,0 chrIV 1343357 . A G 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=3.906;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.147;QD=22.03;ReadPosRankSum=1.703;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2632,297,0 chrIV 1343581 . T C 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=207;Dels=0.00;FS=2.574;HaplotypeScore=16.6509;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.966;QD=22.87;ReadPosRankSum=2.947;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4734,534,0 chrIV 1343962 . A G 2550 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.61;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2583,291,0 chrIV 1344013 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.56;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2740,312,0 chrIV 1344040 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.99;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3374,369,0 chrIV 1344235 . C T 2484 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.58;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2517,288,0 chrIV 1344556 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2397,264,0 chrIV 1344667 . A G 3193 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.87;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3226,357,0 chrIV 1344681 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.46;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3061,339,0 chrIV 1344727 . A G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.495;QD=19.69;ReadPosRankSum=1.703;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2376,270,0 chrIV 1344805 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.79;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3551,408,0 chrIV 1344838 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.90;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3503,381,0 chrIV 1345064 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.03;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1595,177,0 chrIV 1345079 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.65;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1782,192,0 chrIV 1345315 . A G 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=76;Dels=0.00;FS=4.601;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.162;QD=22.58;ReadPosRankSum=1.686;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1749,198,0 chrIV 1345632 . T A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3677,396,0 chrIV 1346089 . A C 4276.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4276,483,0 chrIV 1346336 . G C 2485 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.7075;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.57;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2518,288,0 chrIV 1346435 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=130;Dels=0.00;FS=3.035;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.690;QD=20.47;ReadPosRankSum=2.412;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2694,303,0 chrIV 1346618 . A G 2918 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.84;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2951,339,0 chrIV 1346636 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=3.233;HaplotypeScore=7.2726;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=-1.710;QD=19.93;ReadPosRankSum=1.710;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3222,369,0 chrIV 1346702 . T C 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.830;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.004;QD=18.55;ReadPosRankSum=-1.154;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2481,252,0 chrIV 1346703 . A G 2489 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.15;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2522,291,0 chrIV 1347017 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.468;QD=21.30;ReadPosRankSum=1.709;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3186,360,0 chrIV 1347065 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.58;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2731,309,0 chrIV 1347437 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.2397;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.64;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3193,366,0 chrIV 1347683 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.73;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2662,300,0 chrIV 1349666 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.99;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3694,417,0 chrIV 1349685 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.797;HaplotypeScore=4.2321;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.882;QD=19.88;ReadPosRankSum=1.711;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3281,378,0 chrIV 1349687 . T C 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.3311;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.866;QD=19.45;ReadPosRankSum=1.711;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3223,372,0 chrIV 1349885 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=192;Dels=0.00;FS=3.029;HaplotypeScore=16.5268;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.583;QD=22.05;ReadPosRankSum=2.424;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:4234,483,0 chrIV 1349944 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.65;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4139,453,0 chrIV 1350135 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=4.357;HaplotypeScore=15.2731;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.039;QD=18.11;ReadPosRankSum=1.709;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2750,315,0 chrIV 1350211 . T C 2313 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.60;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2346,276,0 chrIV 1350213 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.52;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2393,264,0 chrIV 1350342 . G A 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=142;Dels=0.00;FS=11.575;HaplotypeScore=12.6114;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.284;QD=19.13;ReadPosRankSum=2.724;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:2749,312,0 chrIV 1350343 . A G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=140;Dels=0.00;FS=11.389;HaplotypeScore=12.6114;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.633;QD=18.65;ReadPosRankSum=2.806;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2644,309,0 chrIV 1350355 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.22;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2884,327,0 chrIV 1350454 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.05;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2326,258,0 chrIV 1350585 . T C 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=105;Dels=0.00;FS=4.943;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.656;QD=21.47;ReadPosRankSum=1.698;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2287,258,0 chrIV 1350718 . C G 2357 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.62;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2390,279,0 chrIV 1350819 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9475;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.35;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1869,210,0 chrIV 1350913 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.71;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3538,405,0 chrIV 1351399 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.57;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2414,261,0 chrIV 1351660 . A T 2432 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.97;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2465,282,0 chrIV 1351681 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.16;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2870,315,0 chrIV 1351744 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.65;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2371,267,0 chrIV 1351996 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.99;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2907,321,0 chrIV 1352285 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.84;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3397,375,0 chrIV 1352298 . G C 3105 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.56;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3138,354,0 chrIV 1352299 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=22.15;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3323,354,0 chrIV 1352644 . T A 919 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DP=53;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=4;MQRankSum=1.662;QD=17.34;ReadPosRankSum=-1.662;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:5,48:53:99:952,108,0 chrIV 1352741 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.38;MQ0=32;QD=0.36;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:32,15:47:6:48,6,0 chrIV 1352748 . C G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=21.6178;MLEAC=2;MLEAF=1.00;MQ=15.88;MQ0=35;QD=0.36;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:33,15:50:6:49,6,0 chrIV 1352749 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=21.6178;MLEAC=2;MLEAF=1.00;MQ=16.05;MQ0=34;QD=0.36;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:33,16:49:6:49,6,0 chrIV 1352769 . C T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.29;MQ0=32;QD=1.23;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:32,7:39:9:80,9,0 chrIV 1352772 . A C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.13;MQ0=33;QD=1.20;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:32,7:40:9:80,9,0 chrIV 1352775 . G T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.84;MQ0=35;QD=1.14;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:33,8:42:9:80,9,0 chrIV 1352785 . G A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.29;MQ0=32;QD=1.26;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:32,7:39:9:81,9,0 chrIV 1352786 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.29;MQ0=32;QD=1.08;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:32,7:39:9:74,9,0 chrIV 1352787 . A G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.29;MQ0=32;QD=1.26;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:32,7:39:9:81,9,0 chrIV 1352792 . G A 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.29;MQ0=32;QD=1.31;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:32,7:39:9:83,9,0 chrIV 1353101 . T G 1419 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=19.71;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1452,165,0 chrIV 1353103 . A G 1362 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=19.18;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1395,159,0 chrIV 1353158 . T A 1219 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=17.41;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1252,138,0 chrIV 1353214 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=75;Dels=0.00;FS=9.314;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;MQRankSum=0.411;QD=19.60;ReadPosRankSum=2.384;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1503,174,0 chrIV 1353241 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=17.70;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1431,162,0 chrIV 1353245 . A C 1422 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=16.53;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1455,171,0 chrIV 1353261 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=15.51;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1553,183,0 chrIV 1353292 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.44;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2074,237,0 chrIV 1353372 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.936;QD=21.95;ReadPosRankSum=1.711;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3534,399,0 chrIV 1353386 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=1.516;QD=19.29;ReadPosRankSum=2.902;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3004,339,0 chrIV 1353387 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=0.562;QD=19.18;ReadPosRankSum=1.710;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2986,339,0 chrIV 1353457 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=17.93;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2436,282,0 chrIV 1353470 . A G 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=2.892;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;MQRankSum=-1.777;QD=18.52;ReadPosRankSum=2.373;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2404,285,0 chrIV 1353481 . A G 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-0.240;QD=18.81;ReadPosRankSum=1.682;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2629,312,0 chrIV 1353486 . T A 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.199;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;MQRankSum=-0.268;QD=18.65;ReadPosRankSum=1.683;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2682,317,0 chrIV 1353632 . A T 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.605;DP=127;Dels=0.01;FS=2.563;HaplotypeScore=17.5778;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;MQRankSum=-1.605;QD=19.28;ReadPosRankSum=2.944;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2482,285,0 chrIV 1353643 . A T 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=111;Dels=0.00;FS=2.631;HaplotypeScore=7.0987;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;MQRankSum=0.432;QD=19.69;ReadPosRankSum=2.361;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2219,255,0 chrIV 1353675 . A G 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=3.046;HaplotypeScore=100.7720;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;MQRankSum=0.338;QD=16.60;ReadPosRankSum=2.384;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1909,222,0 chrIV 1353826 . T C 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.257;QD=20.92;ReadPosRankSum=1.698;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2146,240,0 chrIV 1353834 . C A 2031 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.72;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2064,231,0 chrIV 1353957 . T A 3109 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.37;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3142,345,0 chrIV 1354002 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.00;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2937,318,0 chrIV 1355589 . T C 2376 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2409,276,0 chrIV 1355685 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2194,237,0 chrIV 1355944 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=22.09;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2617,300,0 chrIV 1357024 . G T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4274,477,0 chrIV 1357207 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=152;Dels=0.00;FS=2.755;HaplotypeScore=12.5866;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.073;QD=22.09;ReadPosRankSum=2.385;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3358,378,0 chrIV 1357270 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.21;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2958,321,0 chrIV 1357702 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.99;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2086,225,0 chrIV 1357745 . C A 2237 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2270,246,0 chrIV 1357979 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.32;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3550,390,0 chrIV 1358093 . T A 3197 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3230,348,0 chrIV 1358851 . A G 2729 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2205;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.83;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2762,318,0 chrIV 1359217 . C A 2879 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.49;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2912,315,0 chrIV 1359219 . A T 2844 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=22.57;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2877,315,0 chrIV 1359221 . T A 2937 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.13;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2970,318,0 chrIV 1359242 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.34;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2950,312,0 chrIV 1359391 . T C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=94;Dels=0.01;FS=3.452;HaplotypeScore=5.1602;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.019;QD=20.00;ReadPosRankSum=1.695;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1913,219,0 chrIV 1359585 . A G 2938 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.60;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2971,336,0 chrIV 1359607 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.22;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2791,318,0 chrIV 1359646 . C G 3134 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4237;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.76;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3167,351,0 chrIV 1359745 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.25;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3557,387,0 chrIV 1359892 . T A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.50;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4005,447,0 chrIV 1359987 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=157;Dels=0.00;FS=3.267;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.960;QD=22.77;ReadPosRankSum=1.666;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3575,411,0 chrIV 1360069 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.759;QD=21.78;ReadPosRankSum=1.661;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3235,363,0 chrIV 1360070 . T C 3094 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.94;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3127,354,0 chrIV 1360167 . T C 3071 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3862;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.58;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3104,351,0 chrIV 1361014 . G T 730 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.47;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:763,84,0 chrIV 1361031 . A G 909 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.14;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:942,108,0 chrIV 1361086 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.26;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1707,186,0 chrIV 1361345 . T G 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.039;DP=173;Dels=0.00;FS=201.394;HaplotypeScore=24.8970;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=0.022;QD=0.64;ReadPosRankSum=-3.273;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,52:173:99:140,0,1964 chrIV 1361801 . A G 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=196;Dels=0.00;FS=6.082;HaplotypeScore=19.1073;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-0.267;QD=22.49;ReadPosRankSum=2.944;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4408,486,0 chrIV 1362059 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.03;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4010,453,0 chrIV 1362063 . T A 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.4558;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.201;QD=22.99;ReadPosRankSum=1.713;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4184,450,0 chrIV 1362236 . C T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.17;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3591,405,0 chrIV 1362620 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.13;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3487,399,0 chrIV 1362669 . C G 3743.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.27;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3743,435,0 chrIV 1362734 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.43;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3772,408,0 chrIV 1362965 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3186,363,0 chrIV 1363089 . G A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.50;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3847,417,0 chrIV 1363256 . A G 3984.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.44;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3984,447,0 chrIV 1363897 . C T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.82;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4358,471,0 chrIV 1364047 . T C 5190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.399;DP=229;Dels=0.00;FS=14.669;HaplotypeScore=9.6147;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.169;QD=22.66;ReadPosRankSum=3.368;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:4,222:229:99:5190,591,0 chrIV 1364074 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.47;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4112,453,0 chrIV 1364141 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.74;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3185,354,0 chrIV 1364167 . A C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.35;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3290,375,0 chrIV 1364482 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.553;QD=22.82;ReadPosRankSum=1.684;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3309,375,0 chrIV 1364514 . G C 3796.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.15;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3796,429,0 chrIV 1364750 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.081;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.196;QD=20.72;ReadPosRankSum=1.676;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2602,291,0 chrIV 1364977 . G A 2918 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.52;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2951,321,0 chrIV 1365000 . C G 2489 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.42;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2522,288,0 chrIV 1365372 . T A 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.198;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.317;QD=25.20;ReadPosRankSum=1.708;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3579,396,0 chrIV 1365693 . T C 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=9.148;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=1.994;QD=21.06;ReadPosRankSum=2.381;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2328,267,0 chrIV 1365779 . C G 2883 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.01;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2916,327,0 chrIV 1365910 . A T 2824 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.23;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2857,315,0 chrIV 1365932 . G A 2627 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.32;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2660,288,0 chrIV 1365964 . T C 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.890;QD=15.79;ReadPosRankSum=1.708;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2307,261,0 chrIV 1365971 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=15.97;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2332,252,0 chrIV 1366117 . T C 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=119;Dels=0.00;FS=9.320;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.944;QD=18.92;ReadPosRankSum=2.365;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,115:119:99:2285,255,0 chrIV 1366294 . T C 2770 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.08;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2803,318,0 chrIV 1366606 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.56;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3049,324,0 chrIV 1366837 . G T 2428 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.30;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2461,267,0 chrIV 1366906 . A T 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.527;DP=96;Dels=0.00;FS=5.798;HaplotypeScore=11.8717;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.884;QD=18.24;ReadPosRankSum=2.864;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1784,192,0 chrIV 1367017 . G C 2780 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.79;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2813,324,0 chrIV 1367147 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.84;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3501,393,0 chrIV 1367163 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0078;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.58;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3669,414,0 chrIV 1367355 . G A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.13;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3886,426,0 chrIV 1367748 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=131;Dels=0.00;FS=5.283;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.261;QD=20.52;ReadPosRankSum=3.284;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2721,318,0 chrIV 1367859 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2238,255,0 chrIV 1368022 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.15;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3028,327,0 chrIV 1368120 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.577;QD=22.16;ReadPosRankSum=1.709;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3413,390,0 chrIV 1368445 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.12;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3760,426,0 chrIV 1368684 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=175;Dels=0.00;FS=6.197;HaplotypeScore=9.8174;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.147;QD=22.33;ReadPosRankSum=2.407;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3908,453,0 chrIV 1369029 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3001,330,0 chrIV 1369451 . C T 1180 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1213,135,0 chrIV 1369505 . G T 2264 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.61;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2297,249,0 chrIV 1369517 . A G 2116 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.75;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2149,246,0 chrIV 1369539 . A C 1908 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.08;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1941,216,0 chrIV 1369744 . G C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.09;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3464,390,0 chrIV 1369795 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.42;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2679,312,0 chrIV 1370033 . T A 3124 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.69;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3157,345,0 chrIV 1370050 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.61;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2876,327,0 chrIV 1370065 . T A 2653 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.10;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2686,294,0 chrIV 1370179 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.41;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3554,396,0 chrIV 1370923 . G A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.53;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4325,474,0 chrIV 1371106 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2025;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.17;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2538,276,0 chrIV 1371121 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.84;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2354,261,0 chrIV 1371136 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.77;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2306,255,0 chrIV 1371190 . A G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.491;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.610;QD=18.36;ReadPosRankSum=1.699;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1961,222,0 chrIV 1371861 . G A 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=143;Dels=0.02;FS=14.974;HaplotypeScore=6.6500;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.757;QD=16.99;ReadPosRankSum=2.733;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:2462,276,0 chrIV 1371862 . A G 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=143;Dels=0.02;FS=5.702;HaplotypeScore=7.4386;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.602;QD=16.55;ReadPosRankSum=2.906;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:2399,279,0 chrIV 1372366 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.1925;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.73;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3193,345,0 chrIV 1372422 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.04;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2678,291,0 chrIV 1372756 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8490;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.54;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2806,312,0 chrIV 1372812 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.59;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2787,300,0 chrIV 1373071 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.97;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3308,375,0 chrIV 1373275 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.22;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3924,426,0 chrIV 1373320 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.55;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2878,324,0 chrIV 1373769 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.45;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2992,327,0 chrIV 1373834 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=158;Dels=0.00;FS=6.749;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.496;QD=21.08;ReadPosRankSum=2.387;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3330,375,0 chrIV 1374352 . T C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=130;Dels=0.00;FS=2.785;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.709;QD=22.68;ReadPosRankSum=2.336;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2982,345,0 chrIV 1374505 . T G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.485;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.131;QD=22.06;ReadPosRankSum=1.684;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3232,366,0 chrIV 1374919 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3166,351,0 chrIV 1375312 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3515,396,0 chrIV 1376221 . C A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.4473;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.00;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4002,438,0 chrIV 1377166 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2649,288,0 chrIV 1377451 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2800,315,0 chrIV 1377547 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3469,393,0 chrIV 1377988 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2768,303,0 chrIV 1378471 . A G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.316;QD=22.24;ReadPosRankSum=1.677;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2858,324,0 chrIV 1379733 . T A 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=4.003;HaplotypeScore=6.0197;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.615;QD=21.78;ReadPosRankSum=1.695;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2059,228,0 chrIV 1379791 . A C 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=2.768;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.423;QD=18.01;ReadPosRankSum=2.391;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1546,174,0 chrIV 1379888 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1843,204,0 chrIV 1380091 . A G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.102;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.036;QD=22.97;ReadPosRankSum=1.696;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2238,261,0 chrIV 1380270 . A G 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=3.762;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.534;QD=22.76;ReadPosRankSum=1.667;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2491,282,0 chrIV 1380556 . T C 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.454;QD=19.74;ReadPosRankSum=1.707;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2757,309,0 chrIV 1380560 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=144;Dels=0.00;FS=2.774;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.186;QD=18.26;ReadPosRankSum=2.398;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2662,306,0 chrIV 1380625 . A G 2234 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.62;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2267,258,0 chrIV 1380649 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.85;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2655,297,0 chrIV 1381111 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.70;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3180,351,0 chrIV 1381693 . T C 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=132;Dels=0.00;FS=2.952;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.455;QD=19.77;ReadPosRankSum=2.393;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2643,306,0 chrIV 1382599 . T C 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=129;Dels=0.00;FS=2.566;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.552;QD=23.23;ReadPosRankSum=2.411;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:3030,339,0 chrIV 1382799 . A G 4306.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.28;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4306,486,0 chrIV 1382829 . A G 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=201;Dels=0.00;FS=7.060;HaplotypeScore=12.1906;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.608;QD=23.50;ReadPosRankSum=2.425;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4724,537,0 chrIV 1382859 . G A 5003.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.60;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5003,561,0 chrIV 1383527 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.02;FS=0.000;HaplotypeScore=21.7274;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.22;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2961,324,0 chrIV 1384185 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.926;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.351;QD=20.80;ReadPosRankSum=1.690;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3390,393,0 chrIV 1384197 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.80;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3598,402,0 chrIV 1384710 . T C 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=207;Dels=0.00;FS=6.169;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=1.346;QD=23.60;ReadPosRankSum=2.367;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4885,561,0 chrIV 1384770 . G A 5594.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.1796;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.29;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:5594,606,0 chrIV 1384944 . T A 3115 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.25;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3148,345,0 chrIV 1385143 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=86.1744;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.91;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2209,246,0 chrIV 1385256 . C A 885 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.59;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:918,99,0 chrIV 1385323 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.43;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1558,165,0 chrIV 1385364 . T C 928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=12.041;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.144;QD=18.94;ReadPosRankSum=1.660;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,47:49:99:961,111,0 chrIV 1385477 . T C 409 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.59;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:51:442,51,0 chrIV 1385481 . T C 383 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.65;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:416,48,0 chrIV 1385522 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=15.66;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1192,144,0 chrIV 1385530 . T G 1290 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=16.33;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1323,150,0 chrIV 1385632 . A G 2135 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9697;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.72;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2168,243,0 chrIV 1385671 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.73;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2147,237,0 chrIV 1385846 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.53;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3790,420,0 chrIV 1386009 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.03;FS=0.000;HaplotypeScore=29.9533;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=17.05;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2966,324,0 chrIV 1386016 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.254;DP=187;Dels=0.00;FS=13.055;HaplotypeScore=11.8954;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.378;QD=16.42;ReadPosRankSum=3.376;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:3104,351,0 chrIV 1386524 . A T 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=130;Dels=0.00;FS=5.540;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.899;QD=22.35;ReadPosRankSum=2.946;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2938,321,0 chrIV 1386659 . T G 1766 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=15.91;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1799,207,0 chrIV 1386693 . A G 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.962;HaplotypeScore=93.2711;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;MQRankSum=-0.511;QD=12.52;ReadPosRankSum=1.675;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:1585,186,0 chrIV 1386851 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.51;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3376,384,0 chrIV 1386935 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.46;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3777,426,0 chrIV 1386977 . T A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.25;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3872,420,0 chrIV 1387034 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.90;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3847,417,0 chrIV 1387061 . G C 3771.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.55;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3771,432,0 chrIV 1387160 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.28;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3177,360,0 chrIV 1387173 . C T 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-0.400;QD=18.56;ReadPosRankSum=0.466;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2929,318,0 chrIV 1387181 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.242;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=0.202;QD=17.90;ReadPosRankSum=1.710;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:2807,321,0 chrIV 1387223 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.62;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3315,360,0 chrIV 1387313 . C T 4790.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.5626;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.92;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4790,525,0 chrIV 1387436 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=6.720;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.751;QD=22.51;ReadPosRankSum=2.365;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3961,456,0 chrIV 1387907 . A T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.76;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3541,390,0 chrIV 1387967 . T G 2261 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.53;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2294,270,0 chrIV 1387982 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.29;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2021,225,0 chrIV 1388042 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.08;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3105,339,0 chrIV 1388069 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.09;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3579,411,0 chrIV 1388150 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.57;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2871,315,0 chrIV 1388273 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.98;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2844,312,0 chrIV 1388378 . A G 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=109;Dels=0.00;FS=2.581;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.602;QD=22.22;ReadPosRankSum=2.936;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2455,279,0 chrIV 1388568 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.86;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1913,219,0 chrIV 1388583 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.80;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1617,180,0 chrIV 1388592 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=17.68;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1483,174,0 chrIV 1388608 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=17.20;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1340,153,0 chrIV 1388749 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.87;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1826,207,0 chrIV 1389010 . T A 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.235;DP=121;Dels=0.00;FS=10.041;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.239;QD=18.60;ReadPosRankSum=4.380;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:7,114:121:99:2283,249,0 chrIV 1389018 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.96;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2314,261,0 chrIV 1389081 . G A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.73;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4086,447,0 chrIV 1389271 . T C 4295.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.85;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4295,492,0 chrIV 1389437 . C G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3287,369,0 chrIV 1389786 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=3.020;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.971;QD=22.27;ReadPosRankSum=2.370;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3429,393,0 chrIV 1389819 . A T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.94;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3466,393,0 chrIV 1389902 . G C 2975 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.25;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3008,342,0 chrIV 1389912 . T G 2656 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.97;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2689,309,0 chrIV 1390050 . A T 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.529;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.049;QD=20.11;ReadPosRankSum=1.586;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2889,327,0 chrIV 1390051 . C A 2873 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.68;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2906,327,0 chrIV 1390233 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=143;Dels=0.00;FS=7.176;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.549;QD=22.61;ReadPosRankSum=2.415;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3267,372,0 chrIV 1390263 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=7.631;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.761;QD=23.58;ReadPosRankSum=2.389;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3844,441,0 chrIV 1390288 . G T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.81;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3923,429,0 chrIV 1390413 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.039;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.929;QD=22.09;ReadPosRankSum=1.709;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3336,381,0 chrIV 1390510 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=146;Dels=0.00;FS=5.840;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.479;QD=21.39;ReadPosRankSum=2.952;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3156,354,0 chrIV 1390794 . T A 2395 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.58;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2428,270,0 chrIV 1390995 . T G 2719 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6872;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.75;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2752,324,0 chrIV 1391073 . T C 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.814;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=2.134;QD=20.47;ReadPosRankSum=2.416;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3062,357,0 chrIV 1391127 . C T 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=3.174;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.501;QD=18.10;ReadPosRankSum=-0.115;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2476,273,0 chrIV 1391349 . T C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.859;QD=16.56;ReadPosRankSum=1.679;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2236,258,0 chrIV 1391355 . T C 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.482;QD=17.39;ReadPosRankSum=1.680;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2363,264,0 chrIV 1391403 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.3583;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=12.81;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:1852,207,0 chrIV 1391478 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.39;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3762,411,0 chrIV 1391586 . A G 3644.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.19;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3644,408,0 chrIV 1391636 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.572;QD=20.93;ReadPosRankSum=1.712;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3705,417,0 chrIV 1391718 . C G 3896.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.9213;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.26;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,168:175:99:3896,444,0 chrIV 1391780 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.9656;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.96;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4085,444,0 chrIV 1391832 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.8106;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.71;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4482,492,0 chrIV 1391865 . T C 4579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.153;QD=23.60;ReadPosRankSum=1.714;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4579,522,0 chrIV 1391941 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=162;Dels=0.00;FS=8.067;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.744;QD=22.23;ReadPosRankSum=3.350;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:4,157:162:99:3601,405,0 chrIV 1391986 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.46;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4402,486,0 chrIV 1392091 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.266;QD=20.99;ReadPosRankSum=1.710;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3295,375,0 chrIV 1392105 . T C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=3.024;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.146;QD=20.08;ReadPosRankSum=2.351;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3065,354,0 chrIV 1392142 . C G 2593 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.50;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2626,306,0 chrIV 1392306 . A T 3040 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.27;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3073,333,0 chrIV 1392322 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.24;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3240,345,0 chrIV 1392396 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.35;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2671,288,0 chrIV 1392663 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.6854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4313,468,0 chrIV 1392696 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=3.024;HaplotypeScore=14.0357;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.158;QD=20.77;ReadPosRankSum=2.379;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3655,417,0 chrIV 1392771 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.41;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4729,522,0 chrIV 1393214 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.586;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.530;QD=22.35;ReadPosRankSum=1.707;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3117,354,0 chrIV 1393304 . C G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3394,390,0 chrIV 1393417 . C T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.7464;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.57;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3535,381,0 chrIV 1393432 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=2.854;HaplotypeScore=10.4136;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.752;QD=20.70;ReadPosRankSum=2.397;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2952,330,0 chrIV 1393591 . T C 4676.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.74;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4676,534,0 chrIV 1393774 . G A 4747.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=18.2683;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.04;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4747,510,0 chrIV 1393893 . G C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.67;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4290,486,0 chrIV 1394008 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.73;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3628,402,0 chrIV 1394018 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.929;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.931;QD=20.70;ReadPosRankSum=1.712;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3623,402,0 chrIV 1394087 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.08;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3125,339,0 chrIV 1394302 . C T 4276.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=19.9053;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.60;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4276,483,0 chrIV 1394566 . T C 2884 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.68;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2917,330,0 chrIV 1394881 . A T 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=4.060;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.308;QD=23.97;ReadPosRankSum=1.668;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3907,426,0 chrIV 1395687 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.7292;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.19;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2624,282,0 chrIV 1395699 . T C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.226;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.432;QD=19.15;ReadPosRankSum=-0.614;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2465,285,0 chrIV 1396041 . A G 2106 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.14;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2139,240,0 chrIV 1396310 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.8792;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.39;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4163,459,0 chrIV 1396357 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.2690;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.39;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4298,495,0 chrIV 1396686 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=4.005;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.841;QD=22.62;ReadPosRankSum=1.651;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3868,441,0 chrIV 1396808 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.32;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2911,318,0 chrIV 1396824 . C T 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;DP=122;Dels=0.00;FS=3.305;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.767;QD=20.76;ReadPosRankSum=-1.164;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2566,265,0 chrIV 1397034 . G T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.09;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3810,429,0 chrIV 1397492 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4390,480,0 chrIV 1397575 . A G 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=4.139;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.607;QD=22.63;ReadPosRankSum=1.711;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3801,432,0 chrIV 1397646 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2622,288,0 chrIV 1397817 . A G 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=125;Dels=0.00;FS=2.838;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.110;QD=20.24;ReadPosRankSum=2.410;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2563,294,0 chrIV 1397878 . T C 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.689;QD=22.84;ReadPosRankSum=1.598;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2386,279,0 chrIV 1398006 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.67;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3252,354,0 chrIV 1398466 . T C 5548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.660;DP=252;Dels=0.00;FS=5.632;HaplotypeScore=11.4139;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.308;QD=22.02;ReadPosRankSum=2.972;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:3,248:252:99:5548,621,0 chrIV 1398785 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=162;Dels=0.00;FS=10.950;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.771;QD=21.82;ReadPosRankSum=2.419;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3535,399,0 chrIV 1398842 . G T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=17.4970;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.55;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3257,348,0 chrIV 1398909 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.72;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3191,354,0 chrIV 1399211 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.20;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3797,438,0 chrIV 1399269 . A C 4563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.7573;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.143;QD=22.70;ReadPosRankSum=1.715;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4563,522,0 chrIV 1399661 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.96;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1351,144,0 chrIV 1399937 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.136;QD=22.82;ReadPosRankSum=1.704;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2840,324,0 chrIV 1400232 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.600;HaplotypeScore=8.9101;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.402;QD=21.64;ReadPosRankSum=1.705;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2781,315,0 chrIV 1400438 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.75;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3467,375,0 chrIV 1400555 . C G 4430.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4430,501,0 chrIV 1400704 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.30;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3034,333,0 chrIV 1400903 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.46;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3616,414,0 chrIV 1400933 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.22;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3803,408,0 chrIV 1401074 . A T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.96;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4408,480,0 chrIV 1401283 . A G 2195 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.95;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2228,255,0 chrIV 1401284 . A G 2195 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.756;QD=19.95;ReadPosRankSum=1.701;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2228,249,0 chrIV 1401288 . C T 2182 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=19.31;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2215,240,0 chrIV 1401289 . C T 2158 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=19.44;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2191,240,0 chrIV 1401432 . T G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=10.6744;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.068;QD=20.82;ReadPosRankSum=2.411;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2740,312,0 chrIV 1401530 . T A 2830 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1611;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.78;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2863,309,0 chrIV 1401563 . T C 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=117;Dels=0.00;FS=10.342;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-1.618;QD=19.93;ReadPosRankSum=2.887;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2365,267,0 chrIV 1401628 . G T 2824 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.61;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2857,318,0 chrIV 1401708 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.58;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2886,315,0 chrIV 1401828 . C A 2801 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8403;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.06;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2834,321,0 chrIV 1402134 . A G 2459 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.5875;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.32;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2492,279,0 chrIV 1402144 . G C 2141 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.78;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,108:114:99:2174,249,0 chrIV 1402305 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0553;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.73;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3441,384,0 chrIV 1402695 . T C 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=98;Dels=0.00;FS=2.625;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=0.495;QD=21.38;ReadPosRankSum=0.216;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:2,95:98:99:2128,221,0 chrIV 1402760 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.49;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1855,213,0 chrIV 1402857 . A G 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=3.043;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=-1.088;QD=15.75;ReadPosRankSum=2.412;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2081,234,0 chrIV 1402868 . G A 1844 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=15.11;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1877,204,0 chrIV 1402872 . C T 1723 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=14.24;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1756,189,0 chrIV 1402876 . A G 1630 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=123;Dels=0.00;FS=3.042;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;MQRankSum=0.252;QD=13.25;ReadPosRankSum=2.389;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:1663,189,0 chrIV 1402910 . T C 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=6.211;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.729;QD=16.53;ReadPosRankSum=2.407;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1950,222,0 chrIV 1403082 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=23.82;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2629,291,0 chrIV 1403147 . T G 1949 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.66;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1982,228,0 chrIV 1403669 . A C 2320 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.28;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2353,267,0 chrIV 1403689 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.34;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2291,261,0 chrIV 1403771 . C T 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.256;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.706;QD=21.32;ReadPosRankSum=1.706;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2826,297,0 chrIV 1404257 . G C 2667 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2700,300,0 chrIV 1404424 . A G 1729 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1762,204,0 chrIV 1404496 . A G 2161 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.75;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2194,249,0 chrIV 1404745 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.98;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2592,282,0 chrIV 1405144 . C T 5809.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=7.4031;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.14;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5809,639,0 chrIV 1405366 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.102;QD=19.74;ReadPosRankSum=1.716;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4362,501,0 chrIV 1405638 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2630,285,0 chrIV 1405750 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.91;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3754,411,0 chrIV 1405832 . T C 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=8.198;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.809;QD=20.28;ReadPosRankSum=2.257;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2102,237,0 chrIV 1405995 . G A 1999 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2032,228,0 chrIV 1406114 . A G 1530 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.68;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1563,177,0 chrIV 1406119 . A C 1504 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.12;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1537,180,0 chrIV 1406203 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.11;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2396,267,0 chrIV 1406338 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.02;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.66;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2048,234,0 chrIV 1406339 . A T 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=108;Dels=0.00;FS=13.491;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.664;QD=19.85;ReadPosRankSum=2.767;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2177,240,0 chrIV 1406350 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.239;QD=20.28;ReadPosRankSum=1.702;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2385,270,0 chrIV 1406418 . A C 2645 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.63;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2678,309,0 chrIV 1406566 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=136;Dels=0.00;FS=6.117;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.060;QD=21.82;ReadPosRankSum=2.888;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:3,131:136:99:3001,354,0 chrIV 1406661 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.44;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3033,330,0 chrIV 1406793 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.25;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4255,480,0 chrIV 1406875 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.10;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2924,315,0 chrIV 1406893 . C A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.99;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3380,372,0 chrIV 1406925 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.0367;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.88;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3938,435,0 chrIV 1406984 . G A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.53;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4377,477,0 chrIV 1407015 . T G 4081.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.93;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4081,465,0 chrIV 1407037 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.058;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.799;QD=22.30;ReadPosRankSum=1.637;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4058,462,0 chrIV 1407114 . C T 4691.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.57;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4691,513,0 chrIV 1407227 . C T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.53;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4096,441,0 chrIV 1407258 . A G 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0196;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.107;QD=18.86;ReadPosRankSum=0.942;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:2881,327,0 chrIV 1407259 . G A 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0196;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.338;QD=19.59;ReadPosRankSum=0.916;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2952,308,0 chrIV 1407434 . T C 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.739;QD=23.34;ReadPosRankSum=1.681;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3231,363,0 chrIV 1407493 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.32;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3167,360,0 chrIV 1407535 . A G 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=125;Dels=0.00;FS=6.058;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.266;QD=21.38;ReadPosRankSum=2.928;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2706,303,0 chrIV 1407845 . C T 4942.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.42;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4942,537,0 chrIV 1407899 . C T 5505.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.2144;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.13;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5505,603,0 chrIV 1407938 . C T 5753.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=21.6022;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.15;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:5753,636,0 chrIV 1408247 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=24.9162;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.47;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3247,363,0 chrIV 1408334 . C T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.45;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4450,486,0 chrIV 1408430 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.13;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3493,378,0 chrIV 1408568 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.64;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3376,381,0 chrIV 1408586 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=2.839;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.799;QD=20.53;ReadPosRankSum=2.415;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2989,342,0 chrIV 1408733 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.70;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3532,369,0 chrIV 1408760 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.705;QD=20.03;ReadPosRankSum=1.705;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2597,303,0 chrIV 1408799 . A G 2069 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=5.4150;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.69;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2102,246,0 chrIV 1408802 . T C 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=126;Dels=0.00;FS=3.027;HaplotypeScore=8.4584;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.724;QD=17.77;ReadPosRankSum=1.736;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2272,258,0 chrIV 1409083 . C T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.7888;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.36;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4976,567,0 chrIV 1409336 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=210;Dels=0.00;FS=3.028;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.077;QD=21.61;ReadPosRankSum=2.426;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4538,513,0 chrIV 1409468 . T C 3074 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3107,354,0 chrIV 1409615 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.529;HaplotypeScore=12.6036;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.244;QD=22.15;ReadPosRankSum=1.659;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3201,363,0 chrIV 1409741 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.86;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3870,426,0 chrIV 1409794 . A G 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=216;Dels=0.00;FS=11.969;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.197;QD=22.74;ReadPosRankSum=2.930;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:3,211:216:99:4911,555,0 chrIV 1409847 . C T 5759.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.4954;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.60;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5759,627,0 chrIV 1410029 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.98;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3530,381,0 chrIV 1410091 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0206;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.36;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2840,303,0 chrIV 1410611 . G A 8571.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=28.0478;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.48;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,365:365:99:8571,934,0 chrIV 1410669 . C G 8564.01 filter AC=2;AF=1.00;AN=2;DP=397;Dels=0.00;FS=0.000;HaplotypeScore=24.7225;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.57;SB=-4.531e+03 GT:AD:DP:GQ:PL 1/1:0,390:397:99:8564,963,0 chrIV 1411239 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.2517;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.78;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4444,486,0 chrIV 1411446 . A C 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=136;Dels=0.00;FS=2.744;HaplotypeScore=5.2645;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.389;QD=20.75;ReadPosRankSum=2.233;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2855,327,0 chrIV 1411454 . A G 2958 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.69;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2991,339,0 chrIV 1411563 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.46;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3801,408,0 chrIV 1411608 . T C 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=4.638;HaplotypeScore=8.3196;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.380;QD=22.44;ReadPosRankSum=1.678;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2928,327,0 chrIV 1411672 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.93;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2305,252,0 chrIV 1411690 . A T 2375 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.31;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2408,264,0 chrIV 1411706 . A C 2749 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.09;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2782,321,0 chrIV 1411922 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.54;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3942,450,0 chrIV 1412047 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.54;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3343,387,0 chrIV 1412132 . T G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.915;QD=18.74;ReadPosRankSum=-1.310;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2338,267,0 chrIV 1412352 . C A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.84;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3244,351,0 chrIV 1412444 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.61;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2252,246,0 chrIV 1412448 . C A 1941 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=15.78;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1974,228,0 chrIV 1412726 . G T 3074 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.20;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3107,336,0 chrIV 1412849 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3138,339,0 chrIV 1412922 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.8488;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.26;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3419,363,0 chrIV 1412942 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=162;Dels=0.00;FS=6.017;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-2.119;QD=20.19;ReadPosRankSum=2.906;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3271,381,0 chrIV 1413914 . T C 2569 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2602,291,0 chrIV 1414373 . A G 2757 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2790,318,0 chrIV 1414490 . T A 1971 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2004,219,0 chrIV 1414748 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.31;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2367,258,0 chrIV 1414935 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.6034;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.03;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2981,339,0 chrIV 1415006 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8754;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.68;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2686,294,0 chrIV 1415045 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=4.071;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.029;QD=20.56;ReadPosRankSum=1.703;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2500,285,0 chrIV 1415051 . G C 2310 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.58;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2343,267,0 chrIV 1415081 . T C 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=118;Dels=0.00;FS=11.229;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.405;QD=18.73;ReadPosRankSum=2.940;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2243,255,0 chrIV 1415193 . A T 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=157;Dels=0.00;FS=4.969;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.489;QD=23.12;ReadPosRankSum=1.710;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3630,405,0 chrIV 1416035 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.777;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.544;QD=23.57;ReadPosRankSum=1.699;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2508,285,0 chrIV 1416384 . A T 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=136;Dels=0.00;FS=6.115;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.459;QD=22.93;ReadPosRankSum=2.934;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3151,348,0 chrIV 1416431 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.5160;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.39;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2876,312,0 chrIV 1416617 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.79;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3783,414,0 chrIV 1416734 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=175;Dels=0.00;FS=5.764;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.058;QD=21.01;ReadPosRankSum=2.937;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3676,420,0 chrIV 1416909 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.18;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2838,306,0 chrIV 1416927 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.402;QD=18.10;ReadPosRankSum=1.677;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2296,267,0 chrIV 1416944 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.402;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.926;QD=18.21;ReadPosRankSum=1.702;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2145,240,0 chrIV 1416976 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.66;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2786,309,0 chrIV 1417050 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.34;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3675,396,0 chrIV 1417298 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.331;QD=22.02;ReadPosRankSum=1.703;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2698,306,0 chrIV 1417343 . G A 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.097;QD=23.07;ReadPosRankSum=1.415;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3078,351,0 chrIV 1417601 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3440,381,0 chrIV 1417646 . C T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7977;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3852,414,0 chrIV 1417706 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3091,339,0 chrIV 1417872 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.53;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3988,456,0 chrIV 1418003 . G C 4560.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4706;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.24;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4560,507,0 chrIV 1418085 . A C 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.653;QD=19.34;ReadPosRankSum=1.716;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4177,483,0 chrIV 1418092 . A G 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=213;Dels=0.00;FS=6.033;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.373;QD=19.96;ReadPosRankSum=2.939;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:4251,477,0 chrIV 1418139 . A T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.77;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3380,384,0 chrIV 1418662 . T C 2223 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.16;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2256,255,0 chrIV 1418928 . A G 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=193;Dels=0.00;FS=2.970;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.717;QD=20.93;ReadPosRankSum=2.372;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4039,459,0 chrIV 1418937 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.27;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4013,453,0 chrIV 1419231 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.91;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3637,405,0 chrIV 1419258 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=161;Dels=0.00;FS=3.009;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-2.236;QD=19.26;ReadPosRankSum=2.419;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3134,360,0 chrIV 1419261 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=161;Dels=0.00;FS=3.017;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-2.001;QD=18.91;ReadPosRankSum=2.341;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3078,342,0 chrIV 1419366 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.59;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4034,438,0 chrIV 1419516 . T C 4367.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.17;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4367,492,0 chrIV 1419978 . A G 5577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=277;Dels=0.00;FS=2.990;HaplotypeScore=21.3177;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.192;QD=20.13;ReadPosRankSum=2.423;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:2,273:277:99:5577,645,0 chrIV 1420155 . T C 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=4.387;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.377;QD=20.81;ReadPosRankSum=1.694;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3870,453,0 chrIV 1420528 . G A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.7436;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.97;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3921,447,0 chrIV 1420566 . C T 5955.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.47;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5955,660,0 chrIV 1420608 . A G 7542.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=373;Dels=0.00;FS=3.723;HaplotypeScore=20.6216;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.178;QD=20.22;ReadPosRankSum=1.723;SB=-3.863e+03 GT:AD:DP:GQ:PL 1/1:1,369:373:99:7542,870,0 chrIV 1420714 . C T 6952.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=22.4268;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.73;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,318:320:99:6952,777,0 chrIV 1420794 . A G 6309.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.29;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,325:327:99:6309,726,0 chrIV 1420932 . G A 4039.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.7816;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.80;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4039,447,0 chrIV 1420941 . G A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.7515;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.54;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3927,435,0 chrIV 1421204 . A T 2142 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.00;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2175,243,0 chrIV 1421222 . C A 1632 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.18;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1665,186,0 chrIV 1421240 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.32;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2197,249,0 chrIV 1421307 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.38;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3904,444,0 chrIV 1421386 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=23.76;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3493,381,0 chrIV 1421456 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.12;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3196,351,0 chrIV 1421579 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=162;Dels=0.00;FS=7.324;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-1.479;QD=20.49;ReadPosRankSum=2.419;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3320,378,0 chrIV 1421596 . A G 2790 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=18.36;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2823,318,0 chrIV 1421618 . T C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=3.146;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;MQRankSum=-0.400;QD=14.97;ReadPosRankSum=1.679;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2024,225,0 chrIV 1421621 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=14.09;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1907,216,0 chrIV 1421633 . A G 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;DP=143;Dels=0.00;FS=3.072;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-0.122;QD=14.58;ReadPosRankSum=0.903;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2118,218,0 chrIV 1421702 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=179;Dels=0.00;FS=5.837;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=1.631;QD=21.50;ReadPosRankSum=2.960;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3848,441,0 chrIV 1421744 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=23.96;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3498,396,0 chrIV 1421768 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=23.25;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3464,390,0 chrIV 1421908 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=148;Dels=0.00;FS=5.715;HaplotypeScore=13.7707;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=2.041;QD=21.06;ReadPosRankSum=2.953;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3150,360,0 chrIV 1421954 . A C 2514 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=17.10;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2547,291,0 chrIV 1421975 . T C 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.568;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;MQRankSum=-0.307;QD=13.41;ReadPosRankSum=1.708;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:1924,225,0 chrIV 1421979 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=14.39;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2005,222,0 chrIV 1422001 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=13.61;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1871,219,0 chrIV 1422008 . C T 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.279;DP=130;Dels=0.00;FS=3.581;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=1.705;QD=15.69;ReadPosRankSum=0.853;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2073,203,0 chrIV 1422082 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.89;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2550,276,0 chrIV 1422450 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1563,168,0 chrIV 1422760 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.82;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1699,195,0 chrIV 1422776 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.71;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1570,177,0 chrIV 1422788 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=17.09;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1486,171,0 chrIV 1422795 . C T 1568 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.5864;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=18.23;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1601,174,0 chrIV 1422856 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.59;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1953,210,0 chrIV 1422936 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=7.335;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.011;QD=22.55;ReadPosRankSum=2.408;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2694,315,0 chrIV 1422969 . T C 2708 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.95;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2741,312,0 chrIV 1423089 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.9551;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.83;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2869,318,0 chrIV 1423134 . T C 2891 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.07;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2924,342,0 chrIV 1423374 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.647;QD=21.22;ReadPosRankSum=1.690;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1794,204,0 chrIV 1423497 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.46;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2391,264,0 chrIV 1423605 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.37;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3030,336,0 chrIV 1423651 . A G 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.222;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.247;QD=23.53;ReadPosRankSum=1.699;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2504,282,0 chrIV 1423668 . A G 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=3.044;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.597;QD=21.99;ReadPosRankSum=2.297;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2166,249,0 chrIV 1423727 . A G 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.732;QD=20.50;ReadPosRankSum=1.700;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2227,261,0 chrIV 1424231 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.76;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3619,405,0 chrIV 1424583 . T C 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=79;Dels=0.00;FS=4.007;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=-1.510;QD=19.61;ReadPosRankSum=1.688;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1582,183,0 chrIV 1424593 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=21.80;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1581,180,0 chrIV 1424601 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=20.71;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1483,165,0 chrIV 1424628 . A T 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.278;QD=21.12;ReadPosRankSum=1.689;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1744,201,0 chrIV 1424813 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=17.19;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1580,183,0 chrIV 1424818 . A G 1458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=5.599;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=0.212;QD=14.88;ReadPosRankSum=1.626;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1491,177,0 chrIV 1424826 . T A 1695 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=16.95;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1728,189,0 chrIV 1424907 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.36;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2322,264,0 chrIV 1424978 . T C 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-1.642;QD=21.20;ReadPosRankSum=1.672;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2471,279,0 chrIV 1425132 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.454;HaplotypeScore=10.7230;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.818;QD=22.17;ReadPosRankSum=1.684;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3247,369,0 chrIV 1425177 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.61;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3268,354,0 chrIV 1425361 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=151;Dels=0.00;FS=7.495;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.961;QD=21.96;ReadPosRankSum=2.385;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3316,369,0 chrIV 1425476 . A G 2358 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.24;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2391,270,0 chrIV 1425560 . G C 3606.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.53;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3606,402,0 chrIV 1425592 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=3.993;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-1.583;QD=18.68;ReadPosRankSum=1.690;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3096,342,0 chrIV 1425615 . G T 2377 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=15.85;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2410,267,0 chrIV 1425629 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=15.92;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2612,291,0 chrIV 1425652 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=15.28;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2157,231,0 chrIV 1425653 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=15.37;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2139,231,0 chrIV 1425814 . T C 3054 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.21;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3087,342,0 chrIV 1426000 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.60;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2463,279,0 chrIV 1426007 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.64;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2350,255,0 chrIV 1426142 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.64;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2819,306,0 chrIV 1426206 . T C 2296 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.62;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2329,258,0 chrIV 1426402 . T C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.170;QD=22.15;ReadPosRankSum=1.698;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2314,264,0 chrIV 1427025 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.399;QD=17.98;ReadPosRankSum=1.658;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3380,399,0 chrIV 1427031 . T A 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=7.453;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.490;QD=18.52;ReadPosRankSum=2.384;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3482,375,0 chrIV 1427252 . T C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=6.160;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.346;QD=18.71;ReadPosRankSum=1.696;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1848,207,0 chrIV 1427658 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.23;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4786,519,0 chrIV 1427686 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.270;QD=21.56;ReadPosRankSum=1.621;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4699,528,0 chrIV 1427707 . A G 4639.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.71;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4639,540,0 chrIV 1427995 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.48;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3381,375,0 chrIV 1428259 . C G 1983 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.87;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2016,231,0 chrIV 1428300 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=18.69;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1622,183,0 chrIV 1428301 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=3.052;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=-1.218;QD=18.31;ReadPosRankSum=2.393;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1608,183,0 chrIV 1428330 . T A 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=108;Dels=0.00;FS=2.802;HaplotypeScore=97.6352;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-1.082;QD=16.71;ReadPosRankSum=2.381;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1838,204,0 chrIV 1428426 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=26.3471;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.49;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3331,360,0 chrIV 1428458 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.24;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3296,363,0 chrIV 1428486 . A G 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=5.703;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=1.015;QD=20.90;ReadPosRankSum=1.541;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3084,363,0 chrIV 1428528 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.5250;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.54;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3989,438,0 chrIV 1428660 . G A 7088.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.11;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:7088,783,0 chrIV 1428864 . G T 6105.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=12.2819;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.50;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6105,693,0 chrIV 1429122 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=147;Dels=0.00;FS=6.007;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.747;QD=20.21;ReadPosRankSum=2.952;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3004,342,0 chrIV 1429245 . A G 5249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=241;Dels=0.00;FS=5.625;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.424;QD=21.78;ReadPosRankSum=1.660;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5249,615,0 chrIV 1429300 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=1.641;QD=15.05;ReadPosRankSum=1.641;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:2923,330,0 chrIV 1429316 . T G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=166.5280;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=0.09;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:6:48,6,0 chrIV 1429599 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.79;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4157,456,0 chrIV 1429855 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=219;Dels=0.00;FS=9.844;HaplotypeScore=15.0279;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.140;QD=15.85;ReadPosRankSum=2.940;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:3,213:219:99:3472,408,0 chrIV 1429971 . C G 5500.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.6905;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.83;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,261:264:99:5500,630,0 chrIV 1430016 . C T 6418.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.4982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.51;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6418,682,0 chrIV 1430082 . G A 5486.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=22.8605;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.12;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5486,600,0 chrIV 1430118 . C G 5607.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.24;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5607,648,0 chrIV 1430241 . C T 6174.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=27.3405;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.44;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6174,678,0 chrIV 1430286 . G A 6391.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.66;SB=-3.635e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6391,714,0 chrIV 1430317 . T A 6590.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.65;SB=-3.350e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:6590,732,0 chrIV 1430342 . T C 5607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=278;Dels=0.00;FS=3.026;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.436;QD=20.17;ReadPosRankSum=2.432;SB=-3.484e+03 GT:AD:DP:GQ:PL 1/1:2,274:278:99:5607,630,0 chrIV 1430445 . T G 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=218;Dels=0.00;FS=4.166;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=0.065;QD=17.91;ReadPosRankSum=1.716;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,213:218:99:3904,453,0 chrIV 1430469 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=2.7178;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=16.69;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:3990,465,0 chrIV 1430486 . C T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=14.69;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:3701,426,0 chrIV 1430496 . G T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=15.06;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:3825,426,0 chrIV 1430578 . C G 4331.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.34;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4331,492,0 chrIV 1430794 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.41;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4021,453,0 chrIV 1430819 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.91;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4645,496,0 chrIV 1430837 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=202;Dels=0.00;FS=2.566;HaplotypeScore=10.2051;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.105;QD=20.58;ReadPosRankSum=2.935;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4158,465,0 chrIV 1430967 . A T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3802,420,0 chrIV 1431076 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.57;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2773,300,0 chrIV 1431080 . G C 2610 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.55;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2643,300,0 chrIV 1431161 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.821;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.552;QD=21.85;ReadPosRankSum=1.655;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2983,333,0 chrIV 1431290 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.34;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2871,327,0 chrIV 1431564 . A G 3810.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.17;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3810,447,0 chrIV 1431670 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=185;Dels=0.00;FS=9.463;HaplotypeScore=11.3476;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.190;QD=23.48;ReadPosRankSum=2.919;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4344,480,0 chrIV 1431919 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.98;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:99:977,108,0 chrIV 1431979 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.63;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1142,126,0 chrIV 1432253 . G C 3641.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.80;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3641,426,0 chrIV 1432285 . G T 3164 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=24.34;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3197,342,0 chrIV 1432329 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.84;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2888,321,0 chrIV 1432390 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.27;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3862,441,0 chrIV 1432429 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=3.587;HaplotypeScore=11.3695;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.198;QD=22.62;ReadPosRankSum=1.715;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4570,534,0 chrIV 1432478 . T A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.4880;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=20.44;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3986,453,0 chrIV 1432487 . A T 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=4.049;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=0.442;QD=20.52;ReadPosRankSum=1.677;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3878,432,0 chrIV 1432521 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=18.61;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3518,378,0 chrIV 1432529 . C A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=18.12;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3280,351,0 chrIV 1432543 . G C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7913;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=0.768;QD=15.16;ReadPosRankSum=1.279;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,175:180:99:2761,327,0 chrIV 1432576 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.54;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3614,396,0 chrIV 1432684 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5962;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.31;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3857,429,0 chrIV 1432790 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.23;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3694,420,0 chrIV 1432889 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.11;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3471,402,0 chrIV 1432932 . T A 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=6.774;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.832;QD=23.52;ReadPosRankSum=2.374;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3833,417,0 chrIV 1433048 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.72;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2665,297,0 chrIV 1433104 . G C 3184 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,154:160:99:3217,372,0 chrIV 1433144 . A C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.9966;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.514;QD=21.38;ReadPosRankSum=1.635;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3133,357,0 chrIV 1433570 . G T 4154.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.10;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4154,468,0 chrIV 1433591 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.163;QD=19.99;ReadPosRankSum=1.712;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3438,393,0 chrIV 1433600 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5380;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.41;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3449,372,0 chrIV 1433710 . A T 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.490;QD=20.61;ReadPosRankSum=1.684;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2980,321,0 chrIV 1433731 . G A 3076 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.37;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3109,339,0 chrIV 1433930 . T C 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.2761;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.151;QD=23.29;ReadPosRankSum=1.714;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4565,516,0 chrIV 1434289 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=172;Dels=0.00;FS=2.826;HaplotypeScore=4.5734;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.107;QD=19.98;ReadPosRankSum=2.421;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3436,393,0 chrIV 1434291 . T G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.916;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.489;QD=19.92;ReadPosRankSum=1.651;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3427,393,0 chrIV 1434367 . C T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.44;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4106,441,0 chrIV 1434455 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.62;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2679,294,0 chrIV 1434557 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.48;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2843,309,0 chrIV 1434716 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=3.270;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.377;QD=20.62;ReadPosRankSum=1.657;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,137:141:99:2940,339,0 chrIV 1434729 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.74;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2738,297,0 chrIV 1434754 . C G 2465 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.96;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2498,285,0 chrIV 1434866 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3838,432,0 chrIV 1434996 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.87;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3255,351,0 chrIV 1435091 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=160;Dels=0.00;FS=12.106;HaplotypeScore=13.2596;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.344;QD=22.34;ReadPosRankSum=2.892;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3575,390,0 chrIV 1435647 . G T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.88;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3325,363,0 chrIV 1435868 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.42;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2320,252,0 chrIV 1436177 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=113;Dels=0.00;FS=6.140;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.721;QD=23.70;ReadPosRankSum=2.405;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2711,303,0 chrIV 1436292 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.76;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2960,330,0 chrIV 1436298 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.17;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2836,303,0 chrIV 1436314 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.5302;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=17.54;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2523,270,0 chrIV 1436590 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=3.314;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.818;QD=20.31;ReadPosRankSum=1.690;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3311,372,0 chrIV 1436607 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.000;QD=20.27;ReadPosRankSum=1.711;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3365,381,0 chrIV 1436636 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=18.84;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2935,315,0 chrIV 1436650 . A G 2766 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.08;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2799,321,0 chrIV 1436661 . T C 2653 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=18.05;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2686,309,0 chrIV 1436736 . T C 3137 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=19.13;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3170,366,0 chrIV 1436742 . T C 3100 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=2.971;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=-0.796;QD=19.14;ReadPosRankSum=2.389;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3133,360,0 chrIV 1436744 . T G 3131 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-1.626;QD=19.21;ReadPosRankSum=1.711;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3164,363,0 chrIV 1436786 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.6539;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.98;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3436,375,0 chrIV 1436939 . T A 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=169;Dels=0.00;FS=9.753;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.838;QD=17.16;ReadPosRankSum=2.958;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:2933,315,0 chrIV 1436962 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.27;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3295,366,0 chrIV 1437126 . T A 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.722;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.533;QD=25.09;ReadPosRankSum=1.707;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3488,384,0 chrIV 1437239 . G T 2592 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.57;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2625,291,0 chrIV 1437254 . G T 2391 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.28;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2424,267,0 chrIV 1437377 . T C 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=94;Dels=0.00;FS=12.735;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.366;QD=20.60;ReadPosRankSum=2.753;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1969,219,0 chrIV 1437427 . A G 1903 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.48;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1936,222,0 chrIV 1437444 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.57;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2186,237,0 chrIV 1437517 . C T 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.839;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7902;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.597;QD=22.69;ReadPosRankSum=1.651;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2937,307,0 chrIV 1437568 . T C 2322 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.11;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2355,276,0 chrIV 1437691 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.90;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2457,282,0 chrIV 1437787 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.24;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2627,285,0 chrIV 1438009 . A G 2226 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.48;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2259,255,0 chrIV 1438421 . T A 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.295;QD=25.01;ReadPosRankSum=1.659;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2409,264,0 chrIV 1438524 . G C 2309 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.56;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2342,264,0 chrIV 1438565 . G C 2122 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.34;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2155,249,0 chrIV 1438580 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.42;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1850,201,0 chrIV 1438595 . A G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.440;QD=19.33;ReadPosRankSum=1.659;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1889,219,0 chrIV 1438656 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.17;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2373,255,0 chrIV 1438733 . A G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.895;QD=23.63;ReadPosRankSum=1.694;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2207,249,0 chrIV 1438894 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.92;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1984,222,0 chrIV 1438949 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.48;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1899,213,0 chrIV 1438984 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.68;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1738,186,0 chrIV 1439164 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2208,237,0 chrIV 1439315 . G A 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5752;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.017;QD=22.95;ReadPosRankSum=0.635;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2351,229,0 chrIV 1439401 . A G 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.589;DP=100;Dels=0.00;FS=3.872;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.178;QD=22.52;ReadPosRankSum=-0.762;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2285,240,0 chrIV 1439525 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.32;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2645,300,0 chrIV 1439942 . T C 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=0.484;QD=16.77;ReadPosRankSum=1.670;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1894,216,0 chrIV 1439951 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=15.76;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1830,204,0 chrIV 1439957 . C T 1813 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=17.10;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1846,201,0 chrIV 1439964 . T G 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;MQRankSum=-1.039;QD=15.35;ReadPosRankSum=1.633;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1645,189,0 chrIV 1439972 . C A 1577 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=14.88;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1610,183,0 chrIV 1440067 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=25.87;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3163,336,0 chrIV 1440171 . T A 2957 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=23.85;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2990,321,0 chrIV 1440272 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.781;QD=21.78;ReadPosRankSum=1.709;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3354,384,0 chrIV 1440302 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.0800;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.64;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3303,366,0 chrIV 1440312 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.1313;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.785;QD=18.91;ReadPosRankSum=1.663;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:2907,330,0 chrIV 1440455 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4427;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.17;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3204,366,0 chrIV 1440482 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=24.30;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3596,384,0 chrIV 1440565 . G C 3026 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.9829;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.61;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3059,357,0 chrIV 1440726 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.60;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3175,345,0 chrIV 1440746 . G T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=23.01;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3659,399,0 chrIV 1440866 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.14;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4165,465,0 chrIV 1440975 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=17.24;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2447,276,0 chrIV 1440976 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=17.85;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2550,282,0 chrIV 1441046 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.3859;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=16.01;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2835,318,0 chrIV 1441134 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.52;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3009,330,0 chrIV 1441160 . A G 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.680;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=-0.247;QD=17.77;ReadPosRankSum=1.707;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2521,288,0 chrIV 1441188 . G C 2273 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=18.04;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2306,258,0 chrIV 1441205 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=16.85;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1886,216,0 chrIV 1441206 . A G 1906 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=17.17;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1939,222,0 chrIV 1441439 . T G 1842 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.67;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1875,216,0 chrIV 1441450 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2753;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.41;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2093,225,0 chrIV 1441508 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.93;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2226,249,0 chrIV 1441639 . A G 2389 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.92;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2422,273,0 chrIV 1441721 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3136;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.32;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2698,309,0 chrIV 1441919 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.62;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2566,288,0 chrIV 1442138 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=3.035;HaplotypeScore=15.7648;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.827;QD=21.99;ReadPosRankSum=2.232;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3475,396,0 chrIV 1442312 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=6.413;HaplotypeScore=5.5678;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.486;QD=22.96;ReadPosRankSum=2.410;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2926,333,0 chrIV 1442387 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.76;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2670,294,0 chrIV 1442546 . A G 2478 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.82;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2511,285,0 chrIV 1442690 . T C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.209;QD=20.71;ReadPosRankSum=1.672;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2456,276,0 chrIV 1442711 . A G 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=3.903;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.291;QD=18.55;ReadPosRankSum=1.701;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2166,246,0 chrIV 1442725 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.101;DP=134;Dels=0.00;FS=2.828;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.679;QD=18.06;ReadPosRankSum=2.413;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2453,276,0 chrIV 1442806 . G A 4376.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.04;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4376,471,0 chrIV 1443134 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.178;QD=20.93;ReadPosRankSum=1.686;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3173,366,0 chrIV 1443154 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.93;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2963,333,0 chrIV 1443187 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.24;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2887,321,0 chrIV 1443206 . T G 2831 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.08;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2864,336,0 chrIV 1443263 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=152;Dels=0.00;FS=5.415;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.914;QD=21.11;ReadPosRankSum=2.848;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3241,375,0 chrIV 1443467 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.77;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1103,117,0 chrIV 1443515 . A T 788 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.15;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:821,90,0 chrIV 1443617 . A C 700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.225;QD=17.07;ReadPosRankSum=1.648;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:84:733,84,0 chrIV 1443669 . T C 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.557;QD=18.96;ReadPosRankSum=1.670;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1095,123,0 chrIV 1443702 . T C 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.345;QD=21.47;ReadPosRankSum=2.384;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1643,189,0 chrIV 1443800 . T C 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.875;QD=23.00;ReadPosRankSum=1.695;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2172,249,0 chrIV 1443911 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.15;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4051,447,0 chrIV 1444256 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3498,399,0 chrIV 1444364 . A G 2819 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.68;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2852,321,0 chrIV 1444445 . A T 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=4.505;HaplotypeScore=6.8687;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.767;QD=24.52;ReadPosRankSum=1.666;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3874,417,0 chrIV 1444544 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.2396;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.14;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3918,438,0 chrIV 1444677 . C T 4163.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1709;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.24;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4163,471,0 chrIV 1444679 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1709;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.31;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4240,471,0 chrIV 1444709 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2647;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.880;QD=20.83;ReadPosRankSum=1.641;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3979,453,0 chrIV 1444847 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=212;Dels=0.00;FS=5.965;HaplotypeScore=14.3081;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.852;QD=19.70;ReadPosRankSum=2.871;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:3,207:212:99:4176,494,0 chrIV 1444895 . G A 3894.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.77;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3894,426,0 chrIV 1445114 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4420,495,0 chrIV 1445198 . A T 5854.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=22.8375;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.78;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5854,639,0 chrIV 1445249 . C T 6069.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.3251;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.71;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6069,672,0 chrIV 1445402 . G T 5658.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.4743;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.09;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5658,621,0 chrIV 1445459 . T A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.41;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4260,462,0 chrIV 1445483 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.888;QD=22.06;ReadPosRankSum=2.407;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3817,435,0 chrIV 1445507 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.65;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3408,375,0 chrIV 1445677 . T C 3178 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.91;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3211,366,0 chrIV 1445740 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.65;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3284,372,0 chrIV 1445756 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=3.017;HaplotypeScore=5.0668;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=1.385;QD=20.78;ReadPosRankSum=2.418;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3284,369,0 chrIV 1445840 . T C 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.887;DP=190;Dels=0.00;FS=14.755;HaplotypeScore=15.1009;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.406;QD=21.66;ReadPosRankSum=4.160;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:6,183:190:99:4115,471,0 chrIV 1445932 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.02;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3594,393,0 chrIV 1446020 . T C 3069 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.31;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3102,366,0 chrIV 1446127 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.5789;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.16;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3543,378,0 chrIV 1446245 . T C 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6476;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.266;QD=23.32;ReadPosRankSum=1.692;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3987,453,0 chrIV 1446323 . A G 3155 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.20;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3188,354,0 chrIV 1446425 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.21;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4169,468,0 chrIV 1446428 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.03;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4267,465,0 chrIV 1446459 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.662;QD=18.34;ReadPosRankSum=1.674;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3282,378,0 chrIV 1446531 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.99;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2992,324,0 chrIV 1446589 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.72;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4039,444,0 chrIV 1446665 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.8697;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.06;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4197,471,0 chrIV 1446716 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.3586;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.736;QD=23.74;ReadPosRankSum=1.649;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3965,444,0 chrIV 1446792 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.43;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2613,285,0 chrIV 1446979 . A G 2601 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.22;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2634,294,0 chrIV 1447014 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.31;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2807,297,0 chrIV 1447042 . C A 2519 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5613;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.53;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2552,285,0 chrIV 1447067 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.41;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2360,273,0 chrIV 1447111 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.114;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=1.623;QD=21.50;ReadPosRankSum=1.678;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2763,315,0 chrIV 1447149 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=22.58;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3104,345,0 chrIV 1447213 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=20.99;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2636,297,0 chrIV 1447231 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=21.10;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2080,228,0 chrIV 1447296 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=22.18;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1475,168,0 chrIV 1447297 . T A 1541 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=23.71;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1574,171,0 chrIV 1447313 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=21.90;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1544,165,0 chrIV 1447347 . A T 1827 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=21.75;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1860,207,0 chrIV 1447362 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=18.31;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1589,192,0 chrIV 1447378 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;QD=19.80;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1657,180,0 chrIV 1447402 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=18.10;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1318,147,0 chrIV 1447447 . G A 80.26 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=1.87;SB=-3.213e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:15:113,15,0 chrIV 1447466 . C A 81.26 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=2.39;SB=-2.483e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:15:114,15,0 chrIV 1447474 . C G 80.26 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=2.36;SB=-1.773e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:15:113,15,0 chrIV 1447482 . G A 136.06 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=3.68;SB=-1.791e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:21:169,21,0 chrIV 1447517 . T G 457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.206;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=28.7755;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;MQRankSum=-1.767;QD=9.33;ReadPosRankSum=1.635;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:5,44:49:57:490,57,0 chrIV 1447558 . C A 1230 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=22.36;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1263,138,0 chrIV 1447694 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=23.64;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2090,225,0 chrIV 1447837 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.56;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2636,291,0 chrIV 1447877 . T G 2785 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.7789;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.01;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2818,315,0 chrIV 1447959 . A G 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.243;QD=17.93;ReadPosRankSum=1.675;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2203,252,0 chrIV 1447962 . A G 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=123;Dels=0.00;FS=2.997;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.730;QD=18.14;ReadPosRankSum=2.370;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2264,258,0 chrIV 1447991 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.40;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2138,240,0 chrIV 1448100 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=159;Dels=0.00;FS=7.489;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.505;QD=22.10;ReadPosRankSum=2.403;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3514,399,0 chrIV 1448237 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.90;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2814,312,0 chrIV 1448341 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.52;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2516,270,0 chrIV 1448369 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=16.64;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1797,195,0 chrIV 1448385 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3322;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.78;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1580,168,0 chrIV 1448520 . C T 2529 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.32;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2562,279,0 chrIV 1448586 . T C 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.938;QD=24.37;ReadPosRankSum=1.637;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2689,300,0 chrIV 1448690 . T G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.316;QD=22.77;ReadPosRankSum=1.704;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2902,333,0 chrIV 1448987 . T A 2546 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.73;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2579,282,0 chrIV 1449188 . T C 2654 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.91;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2687,306,0 chrIV 1449311 . T C 2588 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2621,294,0 chrIV 1449383 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2204,240,0 chrIV 1449429 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2413,264,0 chrIV 1450091 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.82;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1757,192,0 chrIV 1450144 . A G 981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.062;DP=52;Dels=0.00;FS=3.014;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.480;QD=18.87;ReadPosRankSum=2.354;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:2,49:52:99:1014,114,0 chrIV 1450588 . C A 2085 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.85;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2118,243,0 chrIV 1450894 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.88;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2058,231,0 chrIV 1451664 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.3525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4522,501,0 chrIV 1451745 . C T 4131.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4131,456,0 chrIV 1452483 . T G 3152 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.51;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3185,372,0 chrIV 1452723 . T G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4688;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.413;QD=20.82;ReadPosRankSum=1.711;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3435,396,0 chrIV 1453300 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:904,102,0 chrIV 1453451 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1930,219,0 chrIV 1453499 . G C 3746.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.01;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3746,426,0 chrIV 1453865 . A G 5133.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.48;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5133,597,0 chrIV 1454543 . A G 2836 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.63;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2869,324,0 chrIV 1454648 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=156;Dels=0.00;FS=2.528;HaplotypeScore=12.8906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.747;QD=22.52;ReadPosRankSum=2.838;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3513,393,0 chrIV 1454951 . A G 2936 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2969,336,0 chrIV 1455029 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.294;QD=22.39;ReadPosRankSum=1.628;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3716,423,0 chrIV 1455133 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=183;Dels=0.00;FS=8.262;HaplotypeScore=14.6255;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.181;QD=22.91;ReadPosRankSum=2.396;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4192,471,0 chrIV 1455354 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.0257;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.50;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3948,429,0 chrIV 1455507 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=7.117;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.171;QD=20.24;ReadPosRankSum=2.420;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3340,375,0 chrIV 1455513 . A G 3292.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.9426;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=20.07;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3292,366,0 chrIV 1455548 . T G 2876 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.2120;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=17.54;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2909,330,0 chrIV 1455561 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=17.01;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2771,300,0 chrIV 1455570 . T C 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=157;Dels=0.00;FS=2.748;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=-1.542;QD=15.29;ReadPosRankSum=2.418;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2434,273,0 chrIV 1455636 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=165;Dels=0.00;FS=9.517;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.079;QD=18.28;ReadPosRankSum=2.958;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3049,348,0 chrIV 1455648 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.530;QD=19.09;ReadPosRankSum=1.712;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,169:174:99:3321,381,0 chrIV 1455696 . A G 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.802;QD=20.29;ReadPosRankSum=1.696;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:3895,441,0 chrIV 1455747 . A G 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.009;QD=21.85;ReadPosRankSum=1.659;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4130,474,0 chrIV 1455876 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.761;QD=21.64;ReadPosRankSum=1.710;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3419,390,0 chrIV 1455942 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.35;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2952,333,0 chrIV 1456321 . A G 899 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:932,108,0 chrIV 1456511 . G A 799 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=18.58;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:832,90,0 chrIV 1456713 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.74;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1579,177,0 chrIV 1458372 . G A 4941.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.33;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4941,543,0 chrIV 1458387 . G A 4527.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.51;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4527,504,0 chrIV 1458423 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=223;Dels=0.00;FS=6.199;HaplotypeScore=11.8528;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-1.598;QD=18.50;ReadPosRankSum=2.416;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4125,468,0 chrIV 1458432 . T C 4173.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.1170;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=19.41;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4173,477,0 chrIV 1458516 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=20.5194;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.98;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4196,456,0 chrIV 1459261 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.48;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2176,234,0 chrIV 1459669 . C G 4576.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.9890;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.80;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4576,531,0 chrIV 1460259 . T G 5695.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=15.7929;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.16;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5695,657,0 chrIV 1460373 . T C 4201.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4201,492,0 chrIV 1460445 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.74;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4262,474,0 chrIV 1460721 . A G 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=104;Dels=0.00;FS=10.224;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=0.816;QD=19.38;ReadPosRankSum=2.874;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2049,231,0 chrIV 1460724 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.48;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2122,234,0 chrIV 1460832 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.91;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2509,282,0 chrIV 1460853 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.058;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.021;QD=21.35;ReadPosRankSum=1.701;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2446,276,0 chrIV 1460932 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=19.68;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2572,282,0 chrIV 1460942 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.42;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2577,276,0 chrIV 1460968 . T C 2885 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.03;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2918,333,0 chrIV 1461025 . G T 4422.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.65;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4422,480,0 chrIV 1461069 . A C 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=4.194;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.360;QD=22.37;ReadPosRankSum=1.697;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4406,504,0 chrIV 1461111 . T G 4347.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.00;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4347,489,0 chrIV 1461391 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.61;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3504,378,0 chrIV 1461567 . G C 1981 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2967;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.30;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2014,225,0 chrIV 1461584 . A C 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=3.397;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.622;QD=17.95;ReadPosRankSum=1.695;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1756,198,0 chrIV 1461591 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=17.76;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1827,195,0 chrIV 1461955 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.892;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.919;QD=22.62;ReadPosRankSum=1.697;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2250,255,0 chrIV 1462308 . T A 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=2.670;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.197;QD=23.60;ReadPosRankSum=2.375;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3124,354,0 chrIV 1462394 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.52;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3458,378,0 chrIV 1462835 . A T 2442 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=18.09;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2475,267,0 chrIV 1462884 . T G 1364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=175;Dels=0.00;FS=2.622;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;MQRankSum=-1.930;QD=7.79;ReadPosRankSum=2.407;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:1397,159,0 chrIV 1463093 . A G 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=0.826;QD=20.56;ReadPosRankSum=1.684;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4482,507,0 chrIV 1463190 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=4.879;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.223;QD=20.59;ReadPosRankSum=1.690;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3398,381,0 chrIV 1463798 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.13;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2439,273,0 chrIV 1464429 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.12;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2923,315,0 chrIV 1464464 . G A 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.900;HaplotypeScore=12.6833;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.385;QD=22.18;ReadPosRankSum=0.706;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2428,264,0 chrIV 1464658 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.94;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3170,339,0 chrIV 1464680 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.48;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2655,306,0 chrIV 1465187 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=4.271;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=1.468;QD=20.63;ReadPosRankSum=1.653;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2736,309,0 chrIV 1465358 . A G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=9.695;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.312;QD=22.04;ReadPosRankSum=2.922;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3185,369,0 chrIV 1465388 . A G 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=116;Dels=0.00;FS=13.883;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.613;QD=19.16;ReadPosRankSum=3.276;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:4,112:116:99:2256,258,0 chrIV 1465397 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5441;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.46;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2304,249,0 chrIV 1465791 . A G 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=177;Dels=0.00;FS=2.416;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.408;QD=20.69;ReadPosRankSum=2.914;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:3663,408,0 chrIV 1465960 . A T 2273 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.86;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2306,258,0 chrIV 1466217 . T C 2343 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.97;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2376,273,0 chrIV 1466261 . A C 1658 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1691,189,0 chrIV 1466338 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.29;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1736,195,0 chrIV 1466364 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.01;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1786,192,0 chrIV 1466633 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.634;QD=21.07;ReadPosRankSum=1.699;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2288,255,0 chrIV 1466643 . C A 2402 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.85;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2435,273,0 chrIV 1467056 . C T 8012.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=21.60;SB=-4.600e+03 GT:AD:DP:GQ:PL 1/1:0,371:371:99:8012,900,0 chrIV 1467059 . C T 8105.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=21.50;SB=-4.550e+03 GT:AD:DP:GQ:PL 1/1:0,377:377:99:8105,891,0 chrIV 1467070 . T C 7286.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=369;Dels=0.00;FS=3.711;HaplotypeScore=3.4938;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;MQRankSum=-1.347;QD=19.75;ReadPosRankSum=1.695;SB=-3.955e+03 GT:AD:DP:GQ:PL 1/1:1,368:369:99:7286,837,0 chrIV 1467094 . C T 6534.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=2.5221;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=19.45;SB=-3.169e+03 GT:AD:DP:GQ:PL 1/1:0,336:336:99:6534,726,0 chrIV 1467118 . A G 5107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-1.362;QD=18.05;ReadPosRankSum=2.328;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:2,280:283:99:5107,585,0 chrIV 1467260 . C T 5269.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=16.1793;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.23;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5269,582,0 chrIV 1467745 . G C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.54;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3765,426,0 chrIV 1467803 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=175;Dels=0.00;FS=3.572;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.511;QD=21.61;ReadPosRankSum=1.692;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3782,420,0 chrIV 1468321 . G C 2383 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.09;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2416,270,0 chrIV 1468381 . G C 1823 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.41;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1856,213,0 chrIV 1468562 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.03;FS=0.000;HaplotypeScore=29.7099;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.87;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1463,159,0 chrIV 1468700 . C T 974 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=11.88;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1007,111,0 chrIV 1468714 . G A 1022 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=10.76;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1055,117,0 chrIV 1468720 . C A 937 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=9.86;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:970,108,0 chrIV 1468724 . A G 804 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.443;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;MQRankSum=-1.331;QD=8.46;ReadPosRankSum=1.696;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:96:837,96,0 chrIV 1468738 . T C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=105;Dels=0.00;FS=2.683;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;MQRankSum=-1.559;QD=9.10;ReadPosRankSum=2.403;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:989,114,0 chrIV 1468802 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.18;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3792,426,0 chrIV 1468862 . G A 5696.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.77;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5696,624,0 chrIV 1469161 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=150;Dels=0.00;FS=6.099;HaplotypeScore=32.6604;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.738;QD=20.35;ReadPosRankSum=2.953;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3085,351,0 chrIV 1469339 . T A 3119 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.51;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3152,348,0 chrIV 1469355 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=19.83;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2968,321,0 chrIV 1469376 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.53;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2533,276,0 chrIV 1469501 . G A 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.72;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3145,342,0 chrIV 1469510 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.54;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3238,366,0 chrIV 1469726 . A G 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.527;QD=19.92;ReadPosRankSum=2.403;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2144,249,0 chrIV 1469752 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.60;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2067,225,0 chrIV 1469852 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=24.15;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1772,198,0 chrIV 1469888 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=24.25;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2167,234,0 chrIV 1469995 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.19;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3562,384,0 chrIV 1470028 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.03;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4205,450,0 chrIV 1470079 . T G 4363.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.61;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4363,495,0 chrIV 1470132 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.88;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4561,492,0 chrIV 1470511 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=16.01;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1698,195,0 chrIV 1470569 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=15.6610;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=22.35;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2983,339,0 chrIV 1470646 . C A 2498 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2811;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.17;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2531,276,0 chrIV 1470784 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.74;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2935,327,0 chrIV 1471301 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.27;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2171,234,0 chrIV 1471461 . T C 765 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.21;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:798,90,0 chrIV 1471496 . T C 93.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.510;DP=34;Dels=0.03;FS=5.598;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-1.131;QD=2.74;ReadPosRankSum=3.061;SB=-2.883e+02 GT:AD:DP:GQ:PL 1/1:4,29:33:15:126,15,0 chrIV 1471524 . T C 1066 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.74;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1099,129,0 chrIV 1471935 . C A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.16;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4300,468,0 chrIV 1472003 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4207,462,0 chrIV 1472110 . G T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.3846;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.10;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3651,396,0 chrIV 1472336 . C A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.87;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3281,357,0 chrIV 1472499 . T A 2519 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.203;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.828;QD=18.25;ReadPosRankSum=1.707;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2552,288,0 chrIV 1472502 . G T 2655 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=19.81;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2688,291,0 chrIV 1472505 . C T 2665 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.74;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2698,294,0 chrIV 1472611 . A C 2755 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.03;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2788,321,0 chrIV 1472819 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.76;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3937,432,0 chrIV 1473117 . T A 2356 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.5307;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.10;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2389,255,0 chrIV 1473285 . C T 1008 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.38;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1041,117,0 chrIV 1473303 . T C 1100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.3045;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.306;QD=21.15;ReadPosRankSum=1.664;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:99:1133,126,0 chrIV 1473635 . G C 2406 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.4738;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.49;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2439,273,0 chrIV 1473646 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.15;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2189,252,0 chrIV 1473736 . A T 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.014;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.621;QD=20.55;ReadPosRankSum=-0.817;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2355,231,0 chrIV 1473859 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.82;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2392,267,0 chrIV 1473860 . C A 2309 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.08;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2342,267,0 chrIV 1473884 . A G 2246 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.8873;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=18.26;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2279,258,0 chrIV 1473919 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.35;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2742,312,0 chrIV 1473980 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.73;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3660,417,0 chrIV 1474139 . A C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=135;Dels=0.00;FS=2.654;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=2.104;QD=20.59;ReadPosRankSum=2.413;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2813,315,0 chrIV 1474220 . A G 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=129;Dels=0.00;FS=7.854;HaplotypeScore=9.3366;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.996;QD=18.88;ReadPosRankSum=3.739;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:5,123:129:99:2469,282,0 chrIV 1474337 . C A 2343 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.10;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2376,261,0 chrIV 1474373 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.63;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2273,246,0 chrIV 1474394 . T A 2116 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.04;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2149,246,0 chrIV 1474416 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.33;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2266,255,0 chrIV 1474473 . C T 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=114;Dels=0.00;FS=3.579;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.851;QD=21.22;ReadPosRankSum=-0.577;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2452,251,0 chrIV 1474507 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.88;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3122,351,0 chrIV 1474567 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=24.49;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2678,294,0 chrIV 1474578 . A G 2193 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.84;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2226,255,0 chrIV 1474805 . A G 300 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=12.50;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:39:333,39,0 chrIV 1475249 . G A 4884.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=28.8385;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.90;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:4884,534,0 chrIV 1475397 . G A 4384.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=17.6168;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.95;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4384,474,0 chrIV 1475979 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=153;Dels=0.00;FS=2.716;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=1.221;QD=19.56;ReadPosRankSum=2.417;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3026,339,0 chrIV 1476168 . G A 4469.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=23.9709;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.28;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4469,489,0 chrIV 1476261 . C T 4955.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.32;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4955,549,0 chrIV 1476288 . G T 4505.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.64;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4505,498,0 chrIV 1476401 . G C 5609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=269;Dels=0.00;FS=4.353;HaplotypeScore=12.5131;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.213;QD=20.85;ReadPosRankSum=0.110;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:1,266:269:99:5609,627,0 chrIV 1476502 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=192;Dels=0.00;FS=10.029;HaplotypeScore=9.4930;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.184;QD=20.11;ReadPosRankSum=1.995;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:3861,428,0 chrIV 1476514 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.35;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4090,447,0 chrIV 1476956 . C A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=19.5998;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.33;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3908,426,0 chrIV 1477116 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=3.861;HaplotypeScore=7.9990;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.158;QD=20.62;ReadPosRankSum=1.711;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3361,384,0 chrIV 1477174 . T A 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=4.498;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.779;QD=22.53;ReadPosRankSum=1.715;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4505,501,0 chrIV 1477237 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=23.0337;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.62;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4042,435,0 chrIV 1477311 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.3565;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.99;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4414,483,0 chrIV 1477505 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.200;DP=202;Dels=0.00;FS=5.243;HaplotypeScore=11.8115;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=2.357;QD=22.07;ReadPosRankSum=3.399;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:4,197:202:99:4459,504,0 chrIV 1477586 . C T 5325.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.37;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5325,597,0 chrIV 1477628 . A C 5541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=14.9912;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.521;QD=20.68;ReadPosRankSum=1.990;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:2,265:268:99:5541,639,0 chrIV 1477732 . G A 6472.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=14.0736;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.09;SB=-3.342e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:6472,691,0 chrIV 1477889 . C T 5564.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.8696;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.44;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5564,612,0 chrIV 1477994 . C T 5645.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.8385;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.02;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5645,607,0 chrIV 1478319 . C G 1468 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.68;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1501,168,0 chrIV 1478697 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.93;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3224,351,0 chrIV 1478891 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.24;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3147,342,0 chrIV 1478931 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2915,321,0 chrIV 1479150 . A G 2902 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2935,348,0 chrIV 1479318 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.1964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3995,456,0 chrIV 1479403 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.8547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4329,489,0 chrIV 1479729 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.25;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2966,321,0 chrIV 1479762 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.267;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.585;QD=22.41;ReadPosRankSum=1.710;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3519,408,0 chrIV 1479784 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.66;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3898,435,0 chrIV 1480113 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.48;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2169,243,0 chrIV 1480138 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3794;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.37;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1968,213,0 chrIV 1480146 . A G 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4984;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.866;QD=17.50;ReadPosRankSum=1.559;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,99:103:99:1836,210,0 chrIV 1480271 . C A 2993 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.57;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3026,333,0 chrIV 1480428 . A T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.06;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3367,366,0 chrIV 1480517 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=154;Dels=0.00;FS=9.289;HaplotypeScore=12.1128;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.719;QD=21.62;ReadPosRankSum=2.928;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3329,381,0 chrIV 1480913 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.990;QD=18.41;ReadPosRankSum=2.891;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1892,216,0 chrIV 1481367 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3688,423,0 chrIV 1481613 . A C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.39;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3358,381,0 chrIV 1481763 . G A 2349 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.97;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2382,261,0 chrIV 1482150 . A G 2527 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.97;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2560,288,0 chrIV 1483110 . C T 4247.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.69;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4247,462,0 chrIV 1483951 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2240,255,0 chrIV 1484182 . T A 2845 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1320;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.58;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2878,324,0 chrIV 1484273 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3008,330,0 chrIV 1484422 . A G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=101;Dels=0.00;FS=2.991;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.800;QD=23.50;ReadPosRankSum=2.401;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2407,273,0 chrIV 1484729 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.11;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2637,297,0 chrIV 1484812 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2978,324,0 chrIV 1485012 . G T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3593,390,0 chrIV 1485530 . T A 128.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=9.15;SB=-2.811e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:161,18,0 chrIV 1485542 . C T 95.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=9.53;SB=-5.514e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:128,15,0 chrIV 1486166 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=14.2621;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.77;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2765,300,0 chrIV 1487095 . T A 2024 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.6801;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.76;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2057,222,0 chrIV 1487442 . C G 1753 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.92;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1786,207,0 chrIV 1487463 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.65;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2079,234,0 chrIV 1487490 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=17.97;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1614,183,0 chrIV 1487491 . A G 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.036;QD=18.48;ReadPosRankSum=2.822;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1604,183,0 chrIV 1487794 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.54;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2467,270,0 chrIV 1487967 . A G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=4.171;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.304;QD=23.32;ReadPosRankSum=1.689;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1922,216,0 chrIV 1488034 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.38;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1801,198,0 chrIV 1488106 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2236,249,0 chrIV 1488682 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.8411;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3614,402,0 chrIV 1488904 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.63;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3201,345,0 chrIV 1489122 . T C 1751 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.24;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1784,198,0 chrIV 1489245 . C T 846 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=18.39;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:879,99,0 chrIV 1489503 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.00;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1666,195,0 chrIV 1489544 . A T 1888 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=19.07;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1921,213,0 chrIV 1489545 . A T 1897 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.97;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1930,213,0 chrIV 1489546 . A T 1880 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=18.43;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1913,213,0 chrIV 1489717 . G C 1850 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.47;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1883,219,0 chrIV 1489727 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=18.53;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1997,225,0 chrIV 1489738 . C T 2110 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=18.51;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2143,237,0 chrIV 1489808 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.05;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3148,351,0 chrIV 1490249 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;QD=23.21;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3736,423,0 chrIV 1490604 . C T 2796 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.31;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2829,312,0 chrIV 1490685 . T C 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.479;QD=22.41;ReadPosRankSum=1.619;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2789,312,0 chrIV 1490715 . A G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.866;QD=19.69;ReadPosRankSum=1.668;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2160,243,0 chrIV 1490879 . A G 1738 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.89;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1771,204,0 chrIV 1491020 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.63;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2545,273,0 chrIV 1491138 . T C 2771 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.09;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2804,321,0 chrIV 1491225 . T A 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=5.024;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.643;QD=23.32;ReadPosRankSum=1.648;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2925,315,0 chrIV 1491321 . C G 2946 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.99;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2979,348,0 chrIV 1491574 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.23;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4112,444,0 chrIV 1491605 . T A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.08;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4196,450,0 chrIV 1491619 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.68;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4033,453,0 chrIV 1491810 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.19;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3927,447,0 chrIV 1491852 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.34;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4558,522,0 chrIV 1491879 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.03;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4143,465,0 chrIV 1491889 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.56;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3912,435,0 chrIV 1491912 . G T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.2294;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.72;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3609,402,0 chrIV 1492309 . T G 2719 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2752,321,0 chrIV 1492576 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2488,270,0 chrIV 1493045 . A G 2504 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.03;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2537,291,0 chrIV 1493055 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=19.23;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2379,270,0 chrIV 1493088 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=108.7481;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.66;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2384,255,0 chrIV 1493255 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=23.97;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2550,279,0 chrIV 1493276 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.48;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2491,279,0 chrIV 1493440 . A G 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.732;QD=21.83;ReadPosRankSum=1.698;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2281,258,0 chrIV 1493468 . G T 1989 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.12;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2022,219,0 chrIV 1493475 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.40;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1954,210,0 chrIV 1493527 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.17;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2046,225,0 chrIV 1493732 . T G 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.149;QD=23.04;ReadPosRankSum=1.698;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2383,270,0 chrIV 1493869 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.24;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3981,429,0 chrIV 1493891 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=182;Dels=0.00;FS=2.448;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.928;QD=18.54;ReadPosRankSum=2.917;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:3375,387,0 chrIV 1493909 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=17.28;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3022,351,0 chrIV 1493916 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=191;Dels=0.00;FS=2.395;HaplotypeScore=9.2781;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.233;QD=16.59;ReadPosRankSum=3.368;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:3202,363,0 chrIV 1494247 . T C 2886 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.70;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2919,330,0 chrIV 1495338 . T C 3192 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.73;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3225,375,0 chrIV 1495374 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=4.155;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.887;QD=20.74;ReadPosRankSum=1.648;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3402,390,0 chrIV 1495550 . G A 4495.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.25;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4495,522,0 chrIV 1495580 . C A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.42;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4761,519,0 chrIV 1495680 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.69;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2710,297,0 chrIV 1496054 . T G 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.144;QD=20.11;ReadPosRankSum=2.357;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1099,123,0 chrIV 1496077 . T C 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.671;QD=21.56;ReadPosRankSum=1.676;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1370,156,0 chrIV 1496158 . C A 908 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=208.4330;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=7.90;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:941,128,0 chrIV 1496312 . A G 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=139;Dels=0.00;FS=6.060;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.761;QD=22.43;ReadPosRankSum=2.877;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3151,345,0 chrIV 1496396 . C T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.99;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3849,414,0 chrIV 1496573 . T C 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=3.511;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.115;QD=23.70;ReadPosRankSum=1.664;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2427,276,0 chrIV 1497025 . T C 4896.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.3469;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.92;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4896,564,0 chrIV 1497031 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.47;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4545,516,0 chrIV 1497133 . A T 5009.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.46;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5009,555,0 chrIV 1497214 . G A 4780.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.73;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4780,514,0 chrIV 1497535 . A G 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5977;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=1.162;QD=19.78;ReadPosRankSum=1.644;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3159,369,0 chrIV 1497552 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.38;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2809,306,0 chrIV 1497564 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.78;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2962,327,0 chrIV 1497589 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.94;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2968,324,0 chrIV 1497628 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6290;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.903;QD=18.85;ReadPosRankSum=1.708;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2709,306,0 chrIV 1497856 . G C 2711 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.59;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2744,312,0 chrIV 1497885 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=4.771;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.013;QD=23.57;ReadPosRankSum=1.706;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3215,354,0 chrIV 1497983 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=17.49;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1380,159,0 chrIV 1498007 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.3384;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.89;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1339,147,0 chrIV 1498087 . C G 2713 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.3869;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.80;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2746,318,0 chrIV 1498561 . T C 2667 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.22;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2700,303,0 chrIV 1498592 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.35;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2760,300,0 chrIV 1498969 . G C 2114 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2147,243,0 chrIV 1499328 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2196,237,0 chrIV 1500051 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1933,204,0 chrIV 1500134 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2107,231,0 chrIV 1500737 . A G 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.669;QD=20.57;ReadPosRankSum=1.698;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2111,237,0 chrIV 1500757 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=19.11;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1734,198,0 chrIV 1500762 . G T 1769 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.02;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1802,195,0 chrIV 1500828 . A C 3055 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.51;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3088,357,0 chrIV 1500945 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.43;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1665,180,0 chrIV 1500949 . A G 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.907;QD=19.46;ReadPosRankSum=1.650;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1668,192,0 chrIV 1501093 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=74;Dels=0.00;FS=9.667;HaplotypeScore=13.7611;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.531;QD=20.74;ReadPosRankSum=2.381;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:2,70:74:99:1568,177,0 chrIV 1501186 . C G 2534 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.84;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2567,288,0 chrIV 1501442 . T G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.473;QD=20.43;ReadPosRankSum=1.700;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2239,255,0 chrIV 1501453 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.095;DP=118;Dels=0.00;FS=2.922;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=1.303;QD=20.27;ReadPosRankSum=2.033;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2425,273,0 chrIV 1502218 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.35;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2468,267,0 chrIV 1502273 . T C 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.813;QD=22.44;ReadPosRankSum=1.697;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2255,258,0 chrIV 1502377 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.55;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1558,177,0 chrIV 1502380 . C T 1541 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.76;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1574,171,0 chrIV 1502449 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.25;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2189,240,0 chrIV 1502604 . T C 2435 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.14;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2468,279,0 chrIV 1502666 . T C 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=4.002;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.071;QD=20.39;ReadPosRankSum=1.697;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2052,231,0 chrIV 1502932 . G C 1849 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1882,216,0 chrIV 1503000 . T C 2241 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.10;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2274,258,0 chrIV 1503352 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.96;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3219,360,0 chrIV 1503574 . C A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.79;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4140,462,0 chrIV 1503857 . A G 1328 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.070;DP=85;Dels=0.00;FS=3.092;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;MQRankSum=2.533;QD=15.62;ReadPosRankSum=1.329;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:11,74:85:99:1361,132,0 chrIV 1503861 . A G 1250 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.784;DP=81;Dels=0.00;FS=3.077;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;MQRankSum=2.226;QD=15.43;ReadPosRankSum=-0.034;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:11,70:81:99:1283,125,0 chrIV 1503867 . A G 1097 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.912;DP=84;Dels=0.00;FS=3.101;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;MQRankSum=0.809;QD=13.06;ReadPosRankSum=-3.474;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:11,73:84:99:1130,110,0 chrIV 1503882 . T C 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.601;DP=91;Dels=0.00;FS=6.935;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;MQRankSum=0.522;QD=8.70;ReadPosRankSum=-3.947;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:12,79:91:74:825,74,0 chrIV 1503887 . G A 891 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=10.12;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:924,102,0 chrIV 1503921 . G A 534.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.157;DP=130;Dels=0.00;FS=3.510;HaplotypeScore=18.5915;MLEAC=1;MLEAF=0.500;MQ=39.44;MQ0=1;MQRankSum=0.149;QD=4.11;ReadPosRankSum=7.246;SB=-7.259e+02 GT:AD:DP:GQ:PL 0/1:41,89:130:99:564,0,220 chrIV 1503929 . A G 290.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.370;DP=154;Dels=0.00;FS=12.516;HaplotypeScore=49.9669;MLEAC=1;MLEAF=0.500;MQ=40.64;MQ0=1;MQRankSum=-0.113;QD=1.88;ReadPosRankSum=-4.408;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:101,53:154:99:320,0,680 chrIV 1503933 . G A 113.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.798;DP=178;Dels=0.00;FS=4.232;HaplotypeScore=61.7905;MLEAC=1;MLEAF=0.500;MQ=41.30;MQ0=1;MQRankSum=1.371;QD=0.63;ReadPosRankSum=-4.088;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:136,42:178:99:143,0,951 chrIV 1503947 . G A 1153.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.778;DP=217;Dels=0.00;FS=5.053;HaplotypeScore=39.3470;MLEAC=1;MLEAF=0.500;MQ=42.54;MQ0=1;MQRankSum=0.352;QD=5.31;ReadPosRankSum=-1.115;SB=-8.910e+02 GT:AD:DP:GQ:PL 0/1:75,140:217:99:1183,0,351 chrIV 1503957 . A G 222.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.390;DP=233;Dels=0.00;FS=7.537;HaplotypeScore=64.8089;MLEAC=1;MLEAF=0.500;MQ=43.66;MQ0=1;MQRankSum=-0.056;QD=0.95;ReadPosRankSum=5.015;SB=-2.630e+02 GT:AD:DP:GQ:PL 0/1:170,61:233:99:252,0,1479 chrIV 1503965 . G A 1426.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.813;DP=236;Dels=0.00;FS=20.594;HaplotypeScore=73.5542;MLEAC=1;MLEAF=0.500;MQ=45.02;MQ0=1;MQRankSum=3.334;QD=6.04;ReadPosRankSum=-1.340;SB=-6.880e+02 GT:AD:DP:GQ:PL 0/1:105,130:236:99:1456,0,429 chrIV 1503972 . T C 111.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.785;DP=248;Dels=0.00;FS=8.794;HaplotypeScore=65.8108;MLEAC=1;MLEAF=0.500;MQ=44.01;MQ0=1;MQRankSum=-0.814;QD=0.45;ReadPosRankSum=5.596;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:190,58:248:99:141,0,1961 chrIV 1503996 . G T 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=7.526;DP=292;Dels=0.00;FS=4.957;HaplotypeScore=36.3157;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;MQRankSum=3.365;QD=11.48;ReadPosRankSum=1.289;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:64,227:292:8:3352,8,0 chrIV 1504222 . T C 397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.017;DP=61;Dels=0.00;FS=24.953;HaplotypeScore=46.8837;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;MQRankSum=5.592;QD=6.51;ReadPosRankSum=-5.892;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:16,44:61:54:430,54,0 chrIV 1504298 . A G 230 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.580;DP=86;Dels=0.00;FS=155.007;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=14.26;MQ0=29;MQRankSum=2.165;QD=2.67;ReadPosRankSum=-5.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:30,54:86:33:263,33,0 chrIV 1504388 . G A 3611.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.091;DP=235;Dels=0.00;FS=27.379;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=25;MQRankSum=1.861;QD=15.37;ReadPosRankSum=0.260;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:24,211:235:99:3611,261,0 chrIV 1504406 . C T 5207.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=285;Dels=0.00;FS=32.428;HaplotypeScore=24.9694;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=22;MQRankSum=3.775;QD=18.27;ReadPosRankSum=2.290;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:16,269:285:99:5207,465,0 chrIV 1504951 . C G 2403 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.56;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2436,282,0 chrIV 1505138 . T A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.09;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3386,363,0 chrIV 1505562 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=4.168;HaplotypeScore=12.4208;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.364;QD=22.39;ReadPosRankSum=1.695;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,93:96:99:2182,246,0 chrIV 1505632 . A G 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.958;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.747;QD=21.28;ReadPosRankSum=1.698;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2225,258,0 chrIV 1505642 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.56;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2233,249,0 chrIV 1505703 . A G 1923 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.0668;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=14.04;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1956,219,0 chrIV 1505716 . T G 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;MQRankSum=-0.688;QD=12.84;ReadPosRankSum=1.708;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:1933,219,0 chrIV 1505719 . T G 1896 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=12.99;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1929,222,0 chrIV 1505741 . C G 1913 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2322;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=12.34;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1946,225,0 chrIV 1505744 . T G 547.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.653;DP=151;Dels=0.00;FS=23.358;HaplotypeScore=2.6548;MLEAC=1;MLEAF=0.500;MQ=42.12;MQ0=0;MQRankSum=-5.373;QD=3.62;ReadPosRankSum=0.878;SB=-2.520e+02 GT:AD:DP:GQ:PL 0/1:93,58:151:99:577,0,945 chrIV 1505766 . C G 2225 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=13.57;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2258,261,0 chrIV 1505772 . T C 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.324;DP=159;Dels=0.00;FS=18.198;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=48.24;MQ0=0;MQRankSum=-5.828;QD=0.21;ReadPosRankSum=-4.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,31:159:64:64,0,1840 chrIV 1506604 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;DP=156;Dels=0.00;FS=7.722;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.058;QD=22.96;ReadPosRankSum=3.772;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:5,150:156:99:3581,411,0 chrIV 1506970 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.29;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2780,303,0 chrIV 1506992 . G C 2670 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.02;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2703,306,0 chrIV 1507780 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2741,297,0 chrIV 1507922 . A G 2247 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2280,255,0 chrIV 1508289 . A T 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=3.010;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-2.219;QD=23.51;ReadPosRankSum=2.424;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4514,492,0 chrIV 1508583 . G T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3820,420,0 chrIV 1508751 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.78;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3256,354,0 chrIV 1509719 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.71;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2463,279,0 chrIV 1509983 . A G 2368 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.34;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,101:106:99:2401,270,0 chrIV 1510411 . A G 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=185;Dels=0.00;FS=10.387;HaplotypeScore=14.4896;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.247;QD=22.08;ReadPosRankSum=2.423;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4085,462,0 chrIV 1510510 . C A 4755.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.5653;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.90;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4755,508,0 chrIV 1511013 . C T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.60;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4477,492,0 chrIV 1511041 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.078;QD=23.11;ReadPosRankSum=-1.655;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4160,471,0 chrIV 1511078 . C T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.49;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4205,468,0 chrIV 1511195 . T G 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=209;Dels=0.00;FS=3.596;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.235;QD=21.99;ReadPosRankSum=1.698;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:4595,513,0 chrIV 1511255 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=178;Dels=0.00;FS=4.004;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.299;QD=19.12;ReadPosRankSum=1.712;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3403,396,0 chrIV 1511859 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.48;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2799,306,0 chrIV 1511881 . T A 2886 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.66;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2919,312,0 chrIV 1512091 . T C 2536 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.13;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2569,291,0 chrIV 1512102 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.06;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2570,282,0 chrIV 1512312 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.51;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3160,357,0 chrIV 1512981 . T C 5367.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.3639;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.65;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5367,600,0 chrIV 1513338 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=176;Dels=0.00;FS=5.131;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.575;QD=23.41;ReadPosRankSum=1.693;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4121,465,0 chrIV 1513649 . T C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.322;QD=18.23;ReadPosRankSum=1.652;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1601,180,0 chrIV 1513657 . A G 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.550;QD=18.97;ReadPosRankSum=1.610;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1664,189,0 chrIV 1514258 . T C 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.184;QD=21.42;ReadPosRankSum=1.585;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:2089,234,0 chrIV 1514440 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.20;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3082,333,0 chrIV 1514500 . A G 2682 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.98;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2715,309,0 chrIV 1514528 . T C 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=12.6750;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.966;QD=21.10;ReadPosRankSum=1.701;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2460,282,0 chrIV 1514569 . A T 2873 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.2783;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.36;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2906,324,0 chrIV 1514618 . T G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.996;QD=20.99;ReadPosRankSum=1.650;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2741,306,0 chrIV 1514724 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.42;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3007,330,0 chrIV 1514773 . A C 2260 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.55;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2293,264,0 chrIV 1514819 . A T 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=116;Dels=0.00;FS=2.943;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.541;QD=21.84;ReadPosRankSum=2.365;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2567,288,0 chrIV 1515052 . T C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=131;Dels=0.00;FS=5.540;HaplotypeScore=10.0464;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.372;QD=18.57;ReadPosRankSum=2.807;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:2466,276,0 chrIV 1515183 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.394;QD=23.03;ReadPosRankSum=1.708;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3340,381,0 chrIV 1515245 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-1.330;QD=21.58;ReadPosRankSum=2.410;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2709,303,0 chrIV 1515254 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.99;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2615,294,0 chrIV 1515303 . A T 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=139;Dels=0.00;FS=2.426;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=2.210;QD=22.88;ReadPosRankSum=2.950;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3213,351,0 chrIV 1515498 . G C 2437 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.13;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2470,279,0 chrIV 1515956 . G T 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.820;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.059;QD=19.14;ReadPosRankSum=1.709;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2846,324,0 chrIV 1515965 . G T 2800 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.06;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2833,312,0 chrIV 1516077 . C A 4327.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.0913;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.31;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4327,468,0 chrIV 1516115 . C A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.1796;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.16;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4348,480,0 chrIV 1516206 . T C 4394.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.88;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4394,492,0 chrIV 1516487 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.90;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3962,426,0 chrIV 1516518 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.80;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3832,420,0 chrIV 1516642 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=162.2450;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.754;QD=0.13;ReadPosRankSum=1.712;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:6:53,6,0 chrIV 1516658 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=3.240;HaplotypeScore=11.8112;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.129;QD=20.45;ReadPosRankSum=1.673;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3579,405,0 chrIV 1516996 . T C 1830 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1863,210,0 chrIV 1517095 . C A 1028 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.87;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1061,120,0 chrIV 1517181 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.7629;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.66;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1858,204,0 chrIV 1517334 . A G 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.331;QD=23.32;ReadPosRankSum=1.703;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2855,324,0 chrIV 1517745 . C T 1379 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1412,159,0 chrIV 1518155 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=9.678;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=2.223;QD=22.99;ReadPosRankSum=2.279;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3022,333,0 chrIV 1518220 . T G 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=111;Dels=0.00;FS=13.063;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.064;QD=20.52;ReadPosRankSum=2.936;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:3,107:111:99:2311,264,0 chrIV 1518269 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.776;QD=22.48;ReadPosRankSum=1.672;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2686,306,0 chrIV 1519166 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.45;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2659,306,0 chrIV 1519267 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.43;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2001,225,0 chrIV 1519341 . T G 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=97;Dels=0.00;FS=3.010;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.443;QD=21.82;ReadPosRankSum=1.696;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2150,243,0 chrIV 1519512 . T C 2369 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.56;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2402,270,0 chrIV 1519868 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=19.0014;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.95;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3929,426,0 chrIV 1519904 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.8914;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.407;QD=21.79;ReadPosRankSum=1.667;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3487,399,0 chrIV 1519967 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=6.702;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=0.088;QD=22.02;ReadPosRankSum=2.273;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3369,384,0 chrIV 1520098 . G C 3569.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.59;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3569,408,0 chrIV 1520843 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.60;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2587,282,0 chrIV 1521369 . A C 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=3.659;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.898;QD=21.39;ReadPosRankSum=1.682;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2985,336,0 chrIV 1521384 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.15;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2867,321,0 chrIV 1521427 . T C 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.427;QD=21.86;ReadPosRankSum=1.687;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3367,390,0 chrIV 1521711 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=179;Dels=0.00;FS=9.791;HaplotypeScore=15.1380;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.277;QD=21.63;ReadPosRankSum=2.367;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3871,435,0 chrIV 1521852 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=18.9843;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.14;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1738,195,0 chrIV 1521974 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.18;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2152,243,0 chrIV 1521978 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.20;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2174,246,0 chrIV 1522055 . T C 2639 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.63;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2672,300,0 chrIV 1522300 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1847,207,0 chrIV 1522557 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3090,330,0 chrIV 1522830 . T C 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=3.645;HaplotypeScore=11.5790;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.959;QD=22.71;ReadPosRankSum=1.715;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4724,540,0 chrIV 1523192 . G C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=20.57;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3332,375,0 chrIV 1523226 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.098;DP=166;Dels=0.00;FS=30.160;HaplotypeScore=9.8103;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;MQRankSum=5.210;QD=21.70;ReadPosRankSum=4.277;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:11,153:166:99:3602,349,0 chrIV 1523326 . A G 199.64 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.712;DP=322;Dels=0.00;FS=449.092;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=9.97;MQ0=139;MQRankSum=10.324;QD=0.62;ReadPosRankSum=5.013;SB=-6.458e-01 GT:AD:DP:GQ:PL 1/1:269,53:322:11:232,11,0 chrIV 1523344 . C T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.746;DP=269;Dels=0.00;FS=321.009;HaplotypeScore=16.6058;MLEAC=1;MLEAF=0.500;MQ=9.90;MQ0=146;MQRankSum=2.982;QD=0.16;ReadPosRankSum=6.730;SB=1.45 GT:AD:DP:GQ:PL 0/1:221,46:269:73:73,0,344 chrIV 1523356 . G A 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DP=226;Dels=0.00;FS=179.189;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=10.84;MQ0=132;MQRankSum=-2.966;QD=0.26;ReadPosRankSum=2.643;SB=-1.821e+00 GT:AD:DP:GQ:PL 0/1:169,56:226:89:89,0,648 chrIV 1523380 . A G 561.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;DP=221;Dels=0.00;FS=190.528;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.85;MQ0=105;MQRankSum=-1.154;QD=2.54;ReadPosRankSum=5.410;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:108,113:221:99:591,0,539 chrIV 1523392 . C T 594.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.721;DP=210;Dels=0.00;FS=269.301;HaplotypeScore=3.1619;MLEAC=1;MLEAF=0.500;MQ=15.84;MQ0=98;MQRankSum=5.843;QD=2.83;ReadPosRankSum=-5.657;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:156,54:210:99:624,0,612 chrIV 1523416 . C T 819.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.391;DP=227;Dels=0.00;FS=308.376;HaplotypeScore=21.2753;MLEAC=1;MLEAF=0.500;MQ=17.69;MQ0=92;MQRankSum=7.588;QD=3.61;ReadPosRankSum=3.468;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:148,79:227:99:849,0,577 chrIV 1523425 . G T 792.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.257;DP=218;Dels=0.00;FS=154.478;HaplotypeScore=18.6797;MLEAC=1;MLEAF=0.500;MQ=18.29;MQ0=81;MQRankSum=8.513;QD=3.63;ReadPosRankSum=6.524;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:140,78:218:99:822,0,573 chrIV 1523440 . T C 912 filter AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=85;QD=4.11;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,221:222:99:945,114,0 chrIV 1523586 . T A 500 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.37;MQ0=77;QD=3.65;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,136:137:69:533,69,0 chrIV 1523616 . A G 469 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.545;DP=137;Dels=0.00;FS=13.485;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=11.26;MQ0=76;MQRankSum=1.610;QD=3.42;ReadPosRankSum=2.797;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:14,123:137:66:502,66,0 chrIV 1523658 . G T 38.97 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.2345;MLEAC=2;MLEAF=1.00;MQ=8.27;MQ0=29;QD=0.72;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:54:9:71,9,0 chrIV 1523744 . A G 40.97 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=15.18;MQ0=0;QD=1.02;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,36:40:9:73,9,0 chrIV 1523806 . A T 87.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;DP=71;Dels=0.00;FS=5.557;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.40;MQ0=2;MQRankSum=3.071;QD=1.23;ReadPosRankSum=-1.560;SB=-5.316e+01 GT:AD:DP:GQ:PL 0/1:8,63:71:10:117,0,10 chrIV 1523856 . A T 18.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=4.2183;MLEAC=1;MLEAF=0.500;MQ=17.88;MQ0=6;MQRankSum=2.054;QD=1.21;ReadPosRankSum=-2.054;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:8,7:15:19:48,0,19 chrIV 1523927 . T A 394 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=1;QD=9.16;SB=-8.500e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:45:427,45,0 chrIV 1523963 . G T 78.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.186;DP=67;Dels=0.00;FS=126.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.78;MQ0=1;MQRankSum=2.519;QD=1.16;ReadPosRankSum=-4.530;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:54,13:67:76:108,0,76 chrIV 1524059 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.734;DP=14;Dels=0.00;FS=14.819;HaplotypeScore=6.8120;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;MQRankSum=-2.100;QD=1.63;ReadPosRankSum=2.100;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,12:14:6:54,6,0 chrIV 1524073 . C T 76.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;DP=17;Dels=0.00;FS=22.304;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=0;MQRankSum=0.057;QD=4.47;ReadPosRankSum=-0.170;SB=-3.002e+00 GT:AD:DP:GQ:PL 0/1:4,13:17:30:106,0,30 chrIV 1524076 . C G 151.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=8.89;SB=-4.906e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:21:184,21,0 chrIV 1524093 . A C 178.03 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=1;QD=7.42;SB=-7.704e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:24:211,24,0 chrIV 1524096 . G A 83.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.975;DP=24;Dels=0.00;FS=32.482;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=1;MQRankSum=0.484;QD=3.46;ReadPosRankSum=-0.261;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:6,18:24:32:113,0,32 chrIV 1524097 . T G 151.06 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=1;QD=6.57;SB=-8.007e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:21:184,21,0 chrIV 1524118 . T C 72.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;DP=24;Dels=0.00;FS=39.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=1;MQRankSum=0.203;QD=3.00;ReadPosRankSum=-1.176;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:5,19:24:32:102,0,32 chrIV 1524124 . T C 82.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;DP=23;Dels=0.00;FS=38.642;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=1;MQRankSum=-0.383;QD=3.57;ReadPosRankSum=-1.915;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:5,18:23:47:112,0,47 chrIV 1524136 . T G 77.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150;DP=20;Dels=0.00;FS=35.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=1;MQRankSum=0.050;QD=3.85;ReadPosRankSum=-1.650;SB=-3.009e+00 GT:AD:DP:GQ:PL 0/1:5,15:20:36:107,0,36 chrIV 1524244 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=0.731;QD=2.41;ReadPosRankSum=0.731;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,4:5:6:43,6,0 chrIV 1524251 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=5.50;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:65,9,0 chrIV 1524260 . A C 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.657;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=10.3215;MLEAC=1;MLEAF=0.500;MQ=17.72;MQ0=0;MQRankSum=0.264;QD=0.73;ReadPosRankSum=2.833;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:20,22:44:62:62,0,100 chrIV 1524261 . G A 76.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.415;DP=48;Dels=0.00;FS=3.010;HaplotypeScore=12.6875;MLEAC=1;MLEAF=0.500;MQ=17.49;MQ0=0;MQRankSum=1.256;QD=1.58;ReadPosRankSum=2.875;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:22,22:48:99:106,0,185 chrIV 1524270 . T C 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.509;DP=91;Dels=0.00;FS=14.923;HaplotypeScore=7.2989;MLEAC=1;MLEAF=0.500;MQ=18.22;MQ0=1;MQRankSum=-0.480;QD=1.53;ReadPosRankSum=-0.098;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,51:91:99:169,0,462 chrIV 1524292 . C A 924 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.47;MQ0=3;QD=6.16;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,150:150:99:957,128,0 chrIV 1524299 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.48;MQ0=3;QD=6.10;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,177:177:99:1113,149,0 chrIV 1524310 . G C 335.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.607;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=20.0352;MLEAC=1;MLEAF=0.500;MQ=19.11;MQ0=3;MQRankSum=-0.160;QD=1.67;ReadPosRankSum=3.127;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,35:200:99:365,0,568 chrIV 1524311 . T A 542.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.320;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=24.8134;MLEAC=1;MLEAF=0.500;MQ=19.11;MQ0=3;MQRankSum=0.178;QD=2.70;ReadPosRankSum=-2.751;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:37,164:201:99:572,0,363 chrIV 1524312 . T C 458.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.557;DP=201;Dels=0.00;FS=28.692;HaplotypeScore=25.7461;MLEAC=1;MLEAF=0.500;MQ=19.11;MQ0=3;MQRankSum=-0.049;QD=2.28;ReadPosRankSum=-3.163;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,159:201:99:488,0,421 chrIV 1524313 . C T 1178 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.01;FS=0.000;HaplotypeScore=35.4428;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=3;QD=5.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,193:199:99:1211,161,0 chrIV 1524321 . G A 487.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.231;DP=222;Dels=0.00;FS=30.545;HaplotypeScore=22.4773;MLEAC=1;MLEAF=0.500;MQ=19.32;MQ0=3;MQRankSum=-0.263;QD=2.19;ReadPosRankSum=0.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,181:222:99:517,0,413 chrIV 1524322 . T G 539.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.387;DP=226;Dels=0.00;FS=29.099;HaplotypeScore=20.6318;MLEAC=1;MLEAF=0.500;MQ=19.26;MQ0=3;MQRankSum=-0.128;QD=2.38;ReadPosRankSum=2.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,181:226:99:569,0,411 chrIV 1524329 . G A 645.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.303;DP=242;Dels=0.00;FS=32.073;HaplotypeScore=7.1435;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=3;MQRankSum=-1.224;QD=2.67;ReadPosRankSum=3.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,201:242:99:675,0,393 chrIV 1524372 . C G 804 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.99;MQ0=0;QD=4.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:837,105,0 chrIV 1524390 . T A 556 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=0;MQRankSum=0.335;QD=4.31;ReadPosRankSum=1.928;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:7,121:129:69:589,69,0 chrIV 1524412 . G A 360 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.186;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=0;MQRankSum=0.845;QD=4.19;ReadPosRankSum=2.278;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,84:86:42:393,42,0 chrIV 1524413 . G A 358 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.072;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=0;MQRankSum=0.931;QD=4.16;ReadPosRankSum=2.221;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,84:86:42:391,42,0 chrIV 1524416 . G A 334 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=23.78;MQ0=0;QD=3.93;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:42:367,42,0 chrIV 1524418 . C A 354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=23.78;MQ0=0;QD=4.16;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:42:387,42,0 chrIV 1524444 . G T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.573;DP=95;Dels=0.00;FS=62.175;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=2;MQRankSum=-1.165;QD=0.45;ReadPosRankSum=-1.963;SB=-6.515e-03 GT:AD:DP:GQ:PL 0/1:89,6:95:73:73,0,260 chrIV 1524446 . G C 242.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;DP=89;Dels=0.00;FS=60.386;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=2;MQRankSum=0.980;QD=2.72;ReadPosRankSum=2.052;SB=-6.002e+01 GT:AD:DP:GQ:PL 0/1:6,83:89:73:272,0,73 chrIV 1524448 . A G 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;DP=95;Dels=0.00;FS=59.164;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=2;MQRankSum=-1.259;QD=0.39;ReadPosRankSum=-1.337;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,6:95:67:67,0,313 chrIV 1524453 . C G 274.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;DP=93;Dels=0.00;FS=95.825;HaplotypeScore=1.8991;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=2;MQRankSum=2.015;QD=2.95;ReadPosRankSum=3.025;SB=-6.402e+01 GT:AD:DP:GQ:PL 0/1:11,82:93:86:304,0,86 chrIV 1524458 . G A 440.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;DP=106;Dels=0.00;FS=78.905;HaplotypeScore=2.6878;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=2;MQRankSum=2.415;QD=4.15;ReadPosRankSum=1.335;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:12,92:106:78:470,0,78 chrIV 1524489 . G A 2710 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.306;DP=267;Dels=0.00;FS=18.435;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=8;MQRankSum=-0.236;QD=10.15;ReadPosRankSum=-3.766;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:17,250:267:99:2743,223,0 chrIV 1524506 . G T 4198.01 filter AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=10;QD=12.96;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,301:324:99:4198,523,0 chrIV 1524519 . A T 4289.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.883;DP=336;Dels=0.00;FS=154.575;HaplotypeScore=22.8386;MLEAC=2;MLEAF=1.00;MQ=18.90;MQ0=8;MQRankSum=7.973;QD=12.76;ReadPosRankSum=2.138;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:30,306:336:99:4289,553,0 chrIV 1524542 . C T 4905.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=18.97;MQ0=10;QD=13.59;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,361:361:99:4905,619,0 chrIV 1524685 . T G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=203;Dels=0.00;FS=54.732;HaplotypeScore=55.6490;MLEAC=1;MLEAF=0.500;MQ=21.74;MQ0=6;MQRankSum=-1.050;QD=0.17;ReadPosRankSum=6.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,20:203:64:64,0,1964 chrIV 1524686 . G T 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.548;DP=202;Dels=0.00;FS=54.673;HaplotypeScore=101.4167;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=6;MQRankSum=-1.027;QD=0.15;ReadPosRankSum=6.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:181,20:202:61:61,0,1880 chrIV 1524689 . G A 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.791;DP=196;Dels=0.00;FS=109.119;HaplotypeScore=102.1506;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=7;MQRankSum=1.063;QD=0.11;ReadPosRankSum=0.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,35:196:51:51,0,1841 chrIV 1524707 . G A 2061 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.345;DP=190;Dels=0.00;FS=13.441;HaplotypeScore=57.0794;MLEAC=2;MLEAF=1.00;MQ=20.49;MQ0=14;MQRankSum=0.799;QD=10.85;ReadPosRankSum=-1.732;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:4,186:190:99:2094,233,0 chrIV 1524708 . C G 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.002;DP=193;Dels=0.00;FS=118.179;HaplotypeScore=57.0794;MLEAC=1;MLEAF=0.500;MQ=20.41;MQ0=15;MQRankSum=-2.670;QD=0.54;ReadPosRankSum=4.521;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,36:193:99:134,0,1293 chrIV 1524725 . T G 554.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.511;DP=198;Dels=0.00;FS=7.304;HaplotypeScore=70.3627;MLEAC=1;MLEAF=0.500;MQ=19.07;MQ0=27;MQRankSum=5.685;QD=2.80;ReadPosRankSum=-5.719;SB=-3.180e+02 GT:AD:DP:GQ:PL 0/1:137,60:198:99:584,0,775 chrIV 1524726 . G A 344.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;DP=199;Dels=0.00;FS=12.495;HaplotypeScore=68.8401;MLEAC=1;MLEAF=0.500;MQ=18.82;MQ0=28;MQRankSum=2.261;QD=1.73;ReadPosRankSum=-1.884;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:151,47:199:99:374,0,1035 chrIV 1524733 . T A 757.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DP=200;Dels=0.00;FS=5.886;HaplotypeScore=93.1578;MLEAC=1;MLEAF=0.500;MQ=18.73;MQ0=31;MQRankSum=5.812;QD=3.79;ReadPosRankSum=-5.631;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/1:128,72:200:99:787,0,587 chrIV 1524740 . C T 1022.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.131;DP=207;Dels=0.00;FS=55.243;HaplotypeScore=64.3620;MLEAC=1;MLEAF=0.500;MQ=18.16;MQ0=34;MQRankSum=6.405;QD=4.94;ReadPosRankSum=-0.111;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:111,96:207:99:1052,0,293 chrIV 1524745 . T C 552.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=226;Dels=0.00;FS=110.635;HaplotypeScore=55.3455;MLEAC=1;MLEAF=0.500;MQ=17.55;MQ0=35;MQRankSum=4.616;QD=2.44;ReadPosRankSum=3.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,61:226:99:582,0,975 chrIV 1524751 . C T 948.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.906;DP=233;Dels=0.00;FS=127.198;HaplotypeScore=58.1090;MLEAC=1;MLEAF=0.500;MQ=17.72;MQ0=34;MQRankSum=5.131;QD=4.07;ReadPosRankSum=5.946;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:142,89:233:99:978,0,785 chrIV 1524767 . T C 632.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260;DP=193;Dels=0.00;FS=136.418;HaplotypeScore=23.3616;MLEAC=1;MLEAF=0.500;MQ=18.11;MQ0=41;MQRankSum=2.937;QD=3.27;ReadPosRankSum=5.757;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,64:193:99:662,0,1055 chrIV 1524779 . T A 2421 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=195;Dels=0.00;FS=15.190;HaplotypeScore=5.1894;MLEAC=2;MLEAF=1.00;MQ=18.88;MQ0=40;MQRankSum=0.591;QD=12.42;ReadPosRankSum=2.955;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:3,192:195:99:2454,308,0 chrIV 1524790 . G A 399.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.184;DP=207;Dels=0.00;FS=2.430;HaplotypeScore=33.0206;MLEAC=1;MLEAF=0.500;MQ=18.63;MQ0=42;MQRankSum=-3.633;QD=1.93;ReadPosRankSum=6.074;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:148,59:207:99:429,0,1496 chrIV 1524797 . C T 389.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.694;DP=211;Dels=0.00;FS=3.408;HaplotypeScore=34.5852;MLEAC=1;MLEAF=0.500;MQ=18.72;MQ0=40;MQRankSum=-3.479;QD=1.84;ReadPosRankSum=6.840;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:155,56:211:99:419,0,1609 chrIV 1524831 . C G 506.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.760;DP=179;Dels=0.00;FS=41.354;HaplotypeScore=60.2466;MLEAC=1;MLEAF=0.500;MQ=19.46;MQ0=25;MQRankSum=-6.369;QD=2.83;ReadPosRankSum=-3.280;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:102,77:179:99:536,0,1315 chrIV 1524832 . A G 922.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.631;DP=180;Dels=0.00;FS=105.751;HaplotypeScore=72.7420;MLEAC=1;MLEAF=0.500;MQ=19.47;MQ0=24;MQRankSum=5.231;QD=5.12;ReadPosRankSum=2.722;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:97,82:180:99:952,0,833 chrIV 1524837 . C A 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.299;DP=156;Dels=0.00;FS=10.474;HaplotypeScore=147.1370;MLEAC=1;MLEAF=0.500;MQ=20.09;MQ0=22;MQRankSum=-2.189;QD=0.29;ReadPosRankSum=1.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,27:156:75:75,0,1513 chrIV 1524843 . G A 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;DP=143;Dels=0.00;FS=21.357;HaplotypeScore=43.5604;MLEAC=1;MLEAF=0.500;MQ=19.74;MQ0=24;MQRankSum=-1.948;QD=0.90;ReadPosRankSum=1.645;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,24:143:99:159,0,952 chrIV 1524877 . A G 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;DP=123;Dels=0.00;FS=57.187;HaplotypeScore=112.5665;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=15;MQRankSum=4.063;QD=0.33;ReadPosRankSum=-1.321;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,13:123:71:71,0,1113 chrIV 1524880 . G A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;DP=113;Dels=0.00;FS=26.879;HaplotypeScore=103.9152;MLEAC=1;MLEAF=0.500;MQ=21.28;MQ0=13;MQRankSum=-1.835;QD=0.10;ReadPosRankSum=-0.973;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,18:113:41:41,0,1014 chrIV 1524885 . G T 692.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.758;DP=100;Dels=0.00;FS=7.389;HaplotypeScore=99.6379;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=11;MQRankSum=0.702;QD=6.92;ReadPosRankSum=0.835;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:32,68:100:99:722,0,256 chrIV 1524886 . T A,C 1024.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=47.5472;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.42;MQ0=11;QD=10.45;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/2:0,34,64:98:99:1084,820,781,264,0,150 chrIV 1524889 . A G 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.396;DP=99;Dels=0.00;FS=7.007;HaplotypeScore=87.1397;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=11;MQRankSum=-1.143;QD=0.21;ReadPosRankSum=-0.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,19:99:51:51,0,877 chrIV 1524890 . A G 304.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.641;DP=99;Dels=0.00;FS=7.871;HaplotypeScore=87.1397;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=11;MQRankSum=5.949;QD=3.07;ReadPosRankSum=0.745;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,33:99:99:334,0,592 chrIV 1524905 . T A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=95;Dels=0.00;FS=22.389;HaplotypeScore=53.7478;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=12;MQRankSum=-0.447;QD=0.51;ReadPosRankSum=-1.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,9:95:78:78,0,621 chrIV 1524907 . G T 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.593;DP=92;Dels=0.00;FS=25.245;HaplotypeScore=58.4820;MLEAC=1;MLEAF=0.500;MQ=20.80;MQ0=12;MQRankSum=-0.091;QD=0.70;ReadPosRankSum=-1.553;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,9:92:94:94,0,480 chrIV 1524915 . T C 315.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.317;DP=90;Dels=0.00;FS=14.723;HaplotypeScore=61.5374;MLEAC=1;MLEAF=0.500;MQ=22.35;MQ0=8;MQRankSum=5.683;QD=3.50;ReadPosRankSum=1.061;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:52,32:90:99:345,0,321 chrIV 1524973 . G A 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;DP=51;Dels=0.00;FS=31.086;HaplotypeScore=27.4417;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=1;MQRankSum=1.239;QD=0.37;ReadPosRankSum=-2.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,7:51:49:49,0,582 chrIV 1524974 . A G 800 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=27.4417;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=1;QD=15.69;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:833,102,0 chrIV 1525003 . G C,T 497.09 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=14.0553;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.26;MQ0=0;QD=10.58;SB=-2.221e+02 GT:AD:DP:GQ:PL 1/2:0,23,24:47:44:557,106,44,450,0,435 chrIV 1525023 . A G 258.08 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.087;DP=38;Dels=0.03;FS=25.652;HaplotypeScore=22.3321;MLEAC=2;MLEAF=1.00;MQ=20.90;MQ0=0;MQRankSum=1.898;QD=6.79;ReadPosRankSum=-1.704;SB=-1.921e+02 GT:AD:DP:GQ:PL 1/1:14,22:37:20:291,20,0 chrIV 1525029 . G C 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;DP=33;Dels=0.00;FS=45.972;HaplotypeScore=11.4689;MLEAC=1;MLEAF=0.500;MQ=20.02;MQ0=0;MQRankSum=0.326;QD=1.36;ReadPosRankSum=-1.331;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:28,5:33:75:75,0,122 chrIV 1525062 . A G 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=5.9486;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=0;QD=1.27;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:58,6,0 chrIV 1525069 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.899;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=5.9486;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=0;MQRankSum=1.258;QD=0.99;ReadPosRankSum=1.857;SB=1.24 GT:AD:DP:GQ:PL 1/1:19,2:21:6:52,6,0 chrIV 1525071 . G A 16.20 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=5.9486;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=0;MQRankSum=1.018;QD=0.77;ReadPosRankSum=1.977;SB=-9.212e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:14:46,0,14 chrIV 1525125 . T C 69.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.95;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:102,12,0 chrIV 1525140 . T C 64.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=6.8480;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=0.000;QD=5.38;ReadPosRankSum=1.931;SB=2.49 GT:AD:DP:GQ:PL 1/1:3,8:12:12:97,12,0 chrIV 1525166 . T C 64.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.159;DP=22;Dels=0.00;FS=23.096;HaplotypeScore=9.2070;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=3;MQRankSum=2.920;QD=2.93;ReadPosRankSum=2.177;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:7,14:22:12:97,12,0 chrIX 162 . G C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.04;MQ0=182;QD=0.12;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,187:188:6:53,6,0 chrIX 198 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.29;MQ0=147;QD=0.13;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:53,97:150:6:50,6,0 chrIX 8192 . T A 110.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.97;MQ0=122;MQRankSum=1.542;QD=0.79;ReadPosRankSum=1.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,138:140:18:143,18,0 chrIX 8221 . C T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=5.29;MQ0=170;MQRankSum=1.974;QD=0.16;ReadPosRankSum=1.149;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,40:201:59:63,0,59 chrIX 8394 . G A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;DP=176;Dels=0.00;FS=4.131;HaplotypeScore=8.4909;MLEAC=1;MLEAF=0.500;MQ=7.59;MQ0=137;MQRankSum=1.446;QD=0.15;ReadPosRankSum=1.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,77:176:57:57,0,232 chrIX 8399 . G T 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.577;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.8122;MLEAC=1;MLEAF=0.500;MQ=7.67;MQ0=134;MQRankSum=-2.047;QD=0.58;ReadPosRankSum=-1.578;SB=-2.600e+01 GT:AD:DP:GQ:PL 0/1:132,43:175:99:132,0,154 chrIX 8405 . A T 207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DP=182;Dels=0.00;FS=6.018;HaplotypeScore=10.1535;MLEAC=1;MLEAF=0.500;MQ=7.73;MQ0=134;MQRankSum=-1.585;QD=1.14;ReadPosRankSum=-0.185;SB=-1.089e+02 GT:AD:DP:GQ:PL 0/1:80,102:182:56:237,0,56 chrIX 19579 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrIX 19706 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=2;QD=5.75;SB=-5.347e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:78,9,0 chrIX 19727 . C A 63.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=12;Dels=0.00;FS=23.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=2;MQRankSum=-1.568;QD=5.27;ReadPosRankSum=-0.365;SB=-2.713e+00 GT:AD:DP:GQ:PL 0/1:6,6:12:10:93,0,10 chrIX 19730 . T C 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=2;QD=7.86;SB=-1.031e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:15:127,15,0 chrIX 19736 . C T 66.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DP=12;Dels=0.00;FS=23.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=2;MQRankSum=-1.568;QD=5.52;ReadPosRankSum=0.365;SB=-2.713e+00 GT:AD:DP:GQ:PL 0/1:6,6:12:10:96,0,10 chrIX 19858 . T C 575 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.662;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=5;MQRankSum=-2.872;QD=13.07;ReadPosRankSum=2.820;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,41:44:69:608,69,0 chrIX 19966 . T C 669.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090;DP=86;Dels=0.00;FS=10.380;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=6;MQRankSum=0.702;QD=7.78;ReadPosRankSum=4.731;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:32,54:86:99:699,0,266 chrIX 20008 . C T 604 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=6;MQRankSum=-0.332;QD=9.44;ReadPosRankSum=2.161;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:7,57:64:55:637,55,0 chrIX 20014 . C T 394.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.112;DP=79;Dels=0.00;FS=2.607;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=5;MQRankSum=1.195;QD=4.99;ReadPosRankSum=3.598;SB=-4.491e+01 GT:AD:DP:GQ:PL 0/1:18,61:79:11:424,0,11 chrIX 20039 . A C 1742 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=6;QD=11.93;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1775,207,0 chrIX 20053 . A C 2305 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=5;QD=12.81;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:2338,270,0 chrIX 20083 . T A 4041.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=6.6635;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=11;MQRankSum=-0.033;QD=14.64;ReadPosRankSum=1.706;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:4041,468,0 chrIX 20161 . T A 2211 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=29;QD=16.38;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2244,255,0 chrIX 20162 . T C 570.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;DP=133;Dels=0.00;FS=3.654;HaplotypeScore=4.9301;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=29;MQRankSum=0.118;QD=4.29;ReadPosRankSum=3.873;SB=-3.200e+02 GT:AD:DP:GQ:PL 0/1:67,66:133:99:600,0,1010 chrIX 20197 . C T 413 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=11;QD=6.88;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:51:446,51,0 chrIX 20218 . C T 1499 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=16;QD=11.80;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1532,171,0 chrIX 20325 . A G 2109 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=37;MQRankSum=-0.645;QD=10.82;ReadPosRankSum=2.418;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:2,193:195:99:2142,255,0 chrIX 20332 . A T 1572 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=34;QD=10.62;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1605,183,0 chrIX 20356 . T C 1217 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=35;QD=10.96;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1250,153,0 chrIX 20362 . T C 318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280;DP=102;Dels=0.00;FS=15.657;HaplotypeScore=6.4576;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=30;MQRankSum=-2.732;QD=3.12;ReadPosRankSum=1.889;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:61,41:102:99:348,0,586 chrIX 20408 . A C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.94;MQ0=15;QD=0.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:6:50,6,0 chrIX 20417 . T C 229 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=14;QD=6.94;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:30:262,30,0 chrIX 20482 . T C 666 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=23;QD=5.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,114:114:81:699,81,0 chrIX 20494 . A G 901 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.72;MQ0=19;QD=7.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:934,108,0 chrIX 20548 . C G 257 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.97;MQ0=16;QD=6.42;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:36:290,36,0 chrIX 20587 . A G 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=12;Dels=0.00;FS=2.881;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.06;MQ0=0;MQRankSum=0.752;QD=3.41;ReadPosRankSum=2.041;SB=-7.547e+01 GT:AD:DP:GQ:PL 1/1:2,10:12:9:73,9,0 chrIX 20713 . C G 63.51 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=11;QD=2.27;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:12:96,12,0 chrIX 20782 . T C 401 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=9;QD=15.42;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:51:434,51,0 chrIX 20821 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=5;QD=2.48;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:51,6,0 chrIX 20889 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrIX 21567 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.68;MQ0=8;QD=0.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:6:48,6,0 chrIX 21568 . C G 36.97 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.68;MQ0=8;QD=1.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:9:69,9,0 chrIX 21613 . T C 94.26 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.12;MQ0=39;QD=1.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:15:127,15,0 chrIX 21637 . A G 62.51 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.94;MQ0=62;QD=0.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:12:95,12,0 chrIX 21932 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.59;MQ0=5;QD=2.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:6:49,6,0 chrIX 23392 . G A 2010 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=6;QD=15.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2043,254,0 chrIX 23538 . C T 8672.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=530;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=87;QD=16.36;SB=-3.984e+03 GT:AD:DP:GQ:PL 1/1:25,500:530:99:8672,950,0 chrIX 23543 . C G 8660.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=500;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=59;QD=17.32;SB=-3.829e+03 GT:AD:DP:GQ:PL 1/1:23,471:500:99:8660,950,0 chrIX 23544 . A C 8596.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=489;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=51;QD=17.58;SB=-3.650e+03 GT:AD:DP:GQ:PL 1/1:33,456:489:99:8596,938,0 chrIX 23584 . A G 4882.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.140;DP=314;Dels=0.00;FS=23.000;HaplotypeScore=45.2904;MLEAC=2;MLEAF=1.00;MQ=31.84;MQ0=20;MQRankSum=-2.218;QD=15.55;ReadPosRankSum=7.034;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:19,295:314:99:4882,557,0 chrIX 23776 . G A 42.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=8.59;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrIX 23788 . A G 418 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=0;QD=14.93;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:57:451,57,0 chrIX 23803 . G A 1075 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=0;QD=14.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1108,135,0 chrIX 23806 . T A 981 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.6912;MLEAC=2;MLEAF=1.00;MQ=23.13;MQ0=0;QD=12.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1014,129,0 chrIX 23812 . G A 1057 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1090,135,0 chrIX 23818 . G A 1060 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.87;MQ0=0;QD=12.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1093,135,0 chrIX 23838 . C T 1029 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=0;QD=11.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1062,135,0 chrIX 23842 . T A 1037 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=0;QD=12.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1070,135,0 chrIX 23851 . T A 1036 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=73.5063;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=0;QD=12.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1069,135,0 chrIX 24523 . G T 55.51 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.69;MQ0=0;QD=0.82;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,68:68:12:88,12,0 chrIX 24529 . A C 77.26 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.05;MQ0=0;QD=1.07;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,72:72:15:110,15,0 chrIX 24535 . A G 78.26 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=0.80;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,94:98:15:111,15,0 chrIX 24544 . G A 245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.266;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=27.0928;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;MQRankSum=-0.395;QD=1.88;ReadPosRankSum=2.363;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:3,122:130:36:278,36,0 chrIX 24646 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.5982;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.62;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3316,387,0 chrIX 24687 . T C 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.735;DP=224;Dels=0.00;FS=43.901;HaplotypeScore=18.7424;MLEAC=1;MLEAF=0.500;MQ=47.95;MQ0=0;MQRankSum=-9.419;QD=0.29;ReadPosRankSum=4.489;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,77:224:95:95,0,2869 chrIX 24688 . A G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.888;DP=229;Dels=0.00;FS=52.205;HaplotypeScore=17.1650;MLEAC=1;MLEAF=0.500;MQ=47.64;MQ0=0;MQRankSum=-8.984;QD=0.07;ReadPosRankSum=4.787;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,77:229:45:45,0,2903 chrIX 24691 . A G 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.629;DP=238;Dels=0.00;FS=43.696;HaplotypeScore=23.4745;MLEAC=1;MLEAF=0.500;MQ=47.40;MQ0=0;MQRankSum=-7.566;QD=0.29;ReadPosRankSum=2.821;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,89:238:99:99,0,2874 chrIX 24790 . A G 8441.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=388;Dels=0.00;FS=13.814;HaplotypeScore=20.5379;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=2.790;QD=21.76;ReadPosRankSum=3.399;SB=-4.113e+03 GT:AD:DP:GQ:PL 1/1:4,384:388:99:8441,992,0 chrIX 25054 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=69.4903;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;QD=19.43;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2908,327,0 chrIX 25059 . C A 2442 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=66.6030;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=20.18;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2475,282,0 chrIX 25075 . G T 1485 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4602;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.52;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1518,171,0 chrIX 25089 . G A 968 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1001,111,0 chrIX 25096 . T C 790 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:96:823,96,0 chrIX 25099 . G A 647 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:78:680,78,0 chrIX 25100 . G C 630 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:78:663,78,0 chrIX 25105 . A G 448 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.086;QD=14.45;ReadPosRankSum=2.292;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:2,29:31:57:481,57,0 chrIX 25108 . T A 420 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.80;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:54:453,54,0 chrIX 25114 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.70;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrIX 25115 . A T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.70;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrIX 25126 . T G 44.97 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.67;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:9:77,9,0 chrIX 25149 . G C 415 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.14;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:51:448,51,0 chrIX 25150 . A T 431 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.45;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:51:464,51,0 chrIX 25151 . G C 391 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.67;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:48:424,48,0 chrIX 25153 . T G 395 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.75;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:51:428,51,0 chrIX 25162 . A G 599 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.21;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:72:632,72,0 chrIX 25165 . G A 596 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.16;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:72:629,72,0 chrIX 25171 . A T 595 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.15;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:72:628,72,0 chrIX 25174 . A G 579 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.93;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:72:612,72,0 chrIX 25176 . T A 616 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.44;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:72:649,72,0 chrIX 25180 . T C 524 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.49;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:66:557,66,0 chrIX 25182 . G A 540 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.71;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:66:573,66,0 chrIX 25183 . A G 525 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.50;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:66:558,66,0 chrIX 25186 . G A 539 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.70;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:66:572,66,0 chrIX 25188 . T C 517 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.39;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,69:70:66:550,66,0 chrIX 25189 . A G 524 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.49;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:66:557,66,0 chrIX 25195 . A G 531 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=5.97;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:66:564,66,0 chrIX 25210 . G A 522 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=6.44;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:66:555,66,0 chrIX 25221 . C T 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.931;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=0;MQRankSum=-0.008;QD=1.89;ReadPosRankSum=0.210;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,28:55:99:134,0,141 chrIX 25228 . G A 244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=5.42;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:33:277,33,0 chrIX 25229 . C G 241 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=5.36;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:33:274,33,0 chrIX 25240 . T A 144.06 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=4.24;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:21:177,21,0 chrIX 25243 . T C 131.06 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=4.37;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:21:164,21,0 chrIX 25888 . A T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.42;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:77,9,0 chrIX 25890 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:79,9,0 chrIX 25892 . G A 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.28;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:76,9,0 chrIX 25894 . T C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.42;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:77,9,0 chrIX 25896 . G C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.85;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:80,9,0 chrIX 25897 . T A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.42;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:77,9,0 chrIX 25902 . T G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.33;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:9:80,9,0 chrIX 25906 . A G 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.73;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:15:131,15,0 chrIX 25909 . T C 96.26 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.67;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:15:129,15,0 chrIX 25910 . A G 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.51;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:15:123,15,0 chrIX 25914 . T C 95.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.472;QD=2.17;ReadPosRankSum=1.654;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,43:44:15:128,15,0 chrIX 25918 . G A 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.17;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:15:128,15,0 chrIX 25920 . T A 130.13 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.96;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:18:163,18,0 chrIX 25924 . G A 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.44;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,50:50:18:155,18,0 chrIX 25927 . C T 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.30;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,54:54:18:157,18,0 chrIX 25932 . A T 128.13 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.37;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,54:54:18:161,18,0 chrIX 25933 . T C 81.26 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.50;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,54:54:15:114,15,0 chrIX 25935 . T A 126.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.126;QD=2.25;ReadPosRankSum=2.362;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,54:56:18:159,18,0 chrIX 25940 . G A 168.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.71;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,62:62:24:201,24,0 chrIX 25957 . C G 226 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.90;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,58:58:30:259,30,0 chrIX 25963 . G A 241 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.73;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,51:51:30:274,30,0 chrIX 25966 . T A 210.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.20;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:27:243,27,0 chrIX 25969 . A T 224 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.77;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,47:47:30:257,30,0 chrIX 25972 . G T 210.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.00;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:27:243,27,0 chrIX 25976 . C G 151.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.87;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:21:184,21,0 chrIX 25981 . T C 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.46;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:98,12,0 chrIX 25982 . A G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.13;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:94,12,0 chrIX 25983 . C A 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.13;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:94,12,0 chrIX 25984 . C A 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.38;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:97,12,0 chrIX 25987 . A G 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.38;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:97,12,0 chrIX 25989 . A C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.54;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:99,12,0 chrIX 25990 . G A 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.54;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:99,12,0 chrIX 26005 . G A 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.47;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:123,15,0 chrIX 26008 . T A 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.54;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:151,18,0 chrIX 26010 . A C 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.74;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:156,18,0 chrIX 26011 . A G 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.54;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:151,18,0 chrIX 26019 . T A 154.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.93;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:21:187,21,0 chrIX 26020 . G A 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.08;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:21:191,21,0 chrIX 26023 . A G 150.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.77;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:21:183,21,0 chrIX 26027 . C G 147.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.07;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:180,21,0 chrIX 26032 . G A 177.03 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=5.53;SB=-5.004e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:24:210,24,0 chrIX 26035 . C T 193.01 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=5.51;SB=-4.902e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:27:226,27,0 chrIX 26038 . A G 245 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=6.81;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:33:278,33,0 chrIX 26053 . A G 610 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=11.96;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:643,75,0 chrIX 26226 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=20.67;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2431,291,0 chrIX 26294 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=22.56;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2898,327,0 chrIX 26336 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=22.91;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2530,282,0 chrIX 26337 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=22.54;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2467,282,0 chrIX 26381 . T C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.658;HaplotypeScore=12.4124;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.586;QD=20.76;ReadPosRankSum=1.705;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2753,318,0 chrIX 26499 . T A 2310 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=20.81;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2343,264,0 chrIX 26507 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=18.54;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2017,237,0 chrIX 26556 . C G 1592 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6326;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=18.09;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1625,195,0 chrIX 26564 . A G 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;MQRankSum=-1.106;QD=17.99;ReadPosRankSum=1.649;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1526,183,0 chrIX 26575 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=19.48;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1767,210,0 chrIX 26591 . T A 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=4.592;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;MQRankSum=0.711;QD=19.38;ReadPosRankSum=1.696;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1874,222,0 chrIX 26620 . T C 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=4.516;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;MQRankSum=0.437;QD=18.54;ReadPosRankSum=1.697;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1887,222,0 chrIX 26667 . T C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.291;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;MQRankSum=-1.516;QD=18.20;ReadPosRankSum=1.696;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1817,216,0 chrIX 26668 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=18.62;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1821,216,0 chrIX 26686 . A G 1795 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=17.77;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1828,219,0 chrIX 26716 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=17.66;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1640,192,0 chrIX 26728 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=14.90;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1255,150,0 chrIX 26761 . T C 1120 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=15.34;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1153,141,0 chrIX 26783 . G C 853 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=13.54;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:886,111,0 chrIX 26788 . A G 802 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;QD=12.94;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:835,105,0 chrIX 26801 . T C 808 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=12.43;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:841,105,0 chrIX 26833 . A G 874 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;QD=15.33;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:907,114,0 chrIX 26878 . T C 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=5.166;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;MQRankSum=0.929;QD=21.03;ReadPosRankSum=1.682;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1484,177,0 chrIX 26880 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=21.42;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1511,177,0 chrIX 26915 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5370;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=20.33;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1700,204,0 chrIX 26982 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=22.46;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1628,189,0 chrIX 27023 . A G 641 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=14.91;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:674,84,0 chrIX 27046 . A G 637 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=15.92;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:670,81,0 chrIX 27054 . A G 578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=3.222;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;MQRankSum=-1.733;QD=13.76;ReadPosRankSum=1.650;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:75:611,75,0 chrIX 27068 . G A 568 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;QD=13.52;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:601,72,0 chrIX 27090 . A G 701 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=13.48;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:734,87,0 chrIX 27099 . C T 798 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=13.76;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:93:831,93,0 chrIX 27108 . A G 736 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=13.14;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:769,90,0 chrIX 27114 . A C 278 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=5.91;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:42:311,42,0 chrIX 27118 . C T 616 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=45.5044;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=9.78;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:72:649,72,0 chrIX 27129 . A G 583 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=8.83;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:72:616,72,0 chrIX 27132 . C G 613 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=9.01;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:75:646,75,0 chrIX 27154 . G A 707 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=9.06;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:84:740,84,0 chrIX 27219 . A G 598 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=7.12;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:75:631,75,0 chrIX 27224 . G A 558 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=6.64;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:72:591,72,0 chrIX 27227 . A G 539 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=6.74;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:69:572,69,0 chrIX 27230 . A G 598 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=6.87;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:78:631,78,0 chrIX 27241 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=9.10;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:93:797,93,0 chrIX 27413 . C A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.0207;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=21.08;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3330,384,0 chrIX 27571 . G T 550 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=3.50;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:66:583,66,0 chrIX 27707 . G T 3202 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=22.87;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3235,369,0 chrIX 27757 . T G 3157 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=22.39;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3190,372,0 chrIX 27976 . A G 2716 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.73;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2749,324,0 chrIX 28070 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.08;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2282,267,0 chrIX 28108 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.62;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2386,264,0 chrIX 28144 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.04;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2410,276,0 chrIX 28464 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.2296;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2587,288,0 chrIX 28728 . T C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.155;QD=20.60;ReadPosRankSum=1.559;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1269,147,0 chrIX 28746 . C T 1429 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.68;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1462,162,0 chrIX 28937 . T A 1575 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.94;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1608,189,0 chrIX 29074 . T G 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.396;QD=20.83;ReadPosRankSum=2.407;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2429,276,0 chrIX 29079 . G T 2392 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.27;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2425,276,0 chrIX 29094 . A T 2342 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.85;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2375,273,0 chrIX 29193 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3369,387,0 chrIX 29292 . C T 4607.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.15;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4607,534,0 chrIX 29414 . G T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.2559;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.78;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3943,462,0 chrIX 29619 . T G 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=160;Dels=0.00;FS=3.413;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.702;QD=19.64;ReadPosRankSum=1.601;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3176,369,0 chrIX 29628 . G C 2838 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.57;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2871,330,0 chrIX 29725 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.268;QD=21.38;ReadPosRankSum=1.670;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3614,420,0 chrIX 29750 . C G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.45;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3353,384,0 chrIX 29775 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.61;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3483,399,0 chrIX 29856 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0553;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.38;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2580,297,0 chrIX 29902 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3158;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.78;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2900,333,0 chrIX 29995 . T A 3146 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.96;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3179,360,0 chrIX 30091 . G C 1814 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.70;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1847,213,0 chrIX 30093 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.08;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2057,231,0 chrIX 30114 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.94;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1808,207,0 chrIX 30189 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;MQRankSum=0.150;QD=22.41;ReadPosRankSum=1.689;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1848,213,0 chrIX 30598 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=20.09;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1580,177,0 chrIX 30599 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8730;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=19.83;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1520,174,0 chrIX 30609 . A C 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;MQRankSum=-1.093;QD=18.31;ReadPosRankSum=1.679;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1223,147,0 chrIX 30672 . C A 888 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=9.87;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:921,105,0 chrIX 30680 . T A 1087 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=10.87;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1120,129,0 chrIX 30792 . A G 469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.538;DP=46;Dels=0.00;FS=5.004;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=-0.398;QD=10.20;ReadPosRankSum=0.550;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:7,39:46:40:502,40,0 chrIX 30821 . A T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.173;DP=42;Dels=0.00;FS=9.781;HaplotypeScore=22.6663;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;MQRankSum=-0.606;QD=0.38;ReadPosRankSum=-3.942;SB=-8.676e+01 GT:AD:DP:GQ:PL 1/1:19,23:42:6:47,6,0 chrIX 30836 . C A 468 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=7.55;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:57:501,57,0 chrIX 30845 . C T 588 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=8.40;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:69:621,69,0 chrIX 30922 . T A 2181 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=16.9868;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.83;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2214,252,0 chrIX 31217 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3301,390,0 chrIX 31472 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2878,321,0 chrIX 31904 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.35;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,119:125:99:2702,303,0 chrIX 31948 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.79;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2836,324,0 chrIX 32093 . T C 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.1791;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.520;QD=19.31;ReadPosRankSum=1.697;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2003,240,0 chrIX 32321 . A G 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=94;Dels=0.00;FS=3.358;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.009;QD=21.66;ReadPosRankSum=1.694;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,90:94:99:2069,237,0 chrIX 32347 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.74;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2250,252,0 chrIX 32528 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.72;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2001,228,0 chrIX 32569 . A G 2589 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.13;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2622,303,0 chrIX 32674 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.35;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3316,372,0 chrIX 32713 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.993;QD=24.46;ReadPosRankSum=1.707;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3327,384,0 chrIX 32753 . T A 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.5578;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.680;QD=23.22;ReadPosRankSum=1.706;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3145,354,0 chrIX 32809 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.19;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3548,408,0 chrIX 32938 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=3.834;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=1.197;QD=22.33;ReadPosRankSum=1.711;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3639,423,0 chrIX 32963 . C G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=21.90;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3548,411,0 chrIX 32991 . C A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=9.9745;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=21.30;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3855,438,0 chrIX 33034 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.534;HaplotypeScore=7.2125;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;MQRankSum=-0.571;QD=20.82;ReadPosRankSum=1.693;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3664,435,0 chrIX 33062 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=157.0361;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=19.79;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3423,384,0 chrIX 33143 . A T 2146 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=6.117;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=0;MQRankSum=-2.001;QD=15.66;ReadPosRankSum=2.414;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2179,249,0 chrIX 33147 . T C 2111 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=15.75;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2144,249,0 chrIX 33151 . C T 1992 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=14.76;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2025,234,0 chrIX 33191 . A C 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;MQRankSum=0.853;QD=9.25;ReadPosRankSum=1.705;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1236,144,0 chrIX 33210 . G T 1368 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=10.44;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:1401,156,0 chrIX 33211 . T C 1318 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=10.06;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1351,159,0 chrIX 33227 . A T 1526 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=12.21;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1559,171,0 chrIX 33387 . C T 1012 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=21.53;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1045,117,0 chrIX 33434 . A C 584 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=19.47;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:72:617,72,0 chrIX 33531 . A T 722 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.29;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:87:755,87,0 chrIX 33562 . G T 923 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=23.07;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:956,111,0 chrIX 33608 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.9327;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=22.31;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1327,150,0 chrIX 33678 . C G 2186 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0951;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.86;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2219,264,0 chrIX 33811 . G A 3177 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.11;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3210,357,0 chrIX 33820 . A G 2856 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=3.550;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.045;QD=18.55;ReadPosRankSum=1.642;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2889,342,0 chrIX 33821 . G A 3004 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.63;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3037,342,0 chrIX 33832 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=165;Dels=0.00;FS=6.998;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=2.301;QD=17.39;ReadPosRankSum=2.330;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:2903,345,0 chrIX 34009 . T C 4208.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=17.0655;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.03;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4208,500,0 chrIX 34088 . T C 4785.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.3178;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.15;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4785,558,0 chrIX 34222 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=3.032;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.145;QD=17.19;ReadPosRankSum=1.664;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:3524,420,0 chrIX 34273 . C T 4201.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.9547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.10;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4201,477,0 chrIX 34525 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.41;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3921,444,0 chrIX 34597 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2376,270,0 chrIX 34648 . A G 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=133;Dels=0.00;FS=2.988;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.082;QD=20.53;ReadPosRankSum=2.357;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2763,318,0 chrIX 34698 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.436;QD=18.37;ReadPosRankSum=1.661;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2734,318,0 chrIX 34699 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.41;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2828,315,0 chrIX 34727 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=17.84;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2174,243,0 chrIX 34918 . T G 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.917;QD=22.26;ReadPosRankSum=1.412;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2704,312,0 chrIX 34985 . G A 1808 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.31;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1841,213,0 chrIX 35111 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=20.48;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2531,297,0 chrIX 35118 . C G 2563 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=21.01;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2596,300,0 chrIX 35226 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=21.55;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2986,333,0 chrIX 35244 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=-1.039;QD=18.48;ReadPosRankSum=1.707;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2620,300,0 chrIX 35247 . T C 2441 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=17.82;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2474,294,0 chrIX 35293 . A T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.028;DP=95;Dels=0.01;FS=4.081;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;MQRankSum=3.740;QD=0.15;ReadPosRankSum=-3.757;SB=-5.376e+01 GT:AD:DP:GQ:PL 1/1:89,5:94:6:45,6,0 chrIX 35313 . C G 1074 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=10.43;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1107,129,0 chrIX 35331 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=11.21;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1221,147,0 chrIX 35336 . A G 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=108;Dels=0.00;FS=5.217;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;MQRankSum=-1.026;QD=10.43;ReadPosRankSum=3.375;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:4,103:108:99:1159,138,0 chrIX 35366 . A T 2274 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=16.60;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2307,258,0 chrIX 35380 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=15.69;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2371,276,0 chrIX 35394 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=17.55;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2701,312,0 chrIX 35408 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=5.643;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=1.490;QD=18.61;ReadPosRankSum=1.708;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2694,312,0 chrIX 35446 . T A 2796 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=19.83;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2829,324,0 chrIX 35579 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;MQRankSum=-1.452;QD=19.99;ReadPosRankSum=1.711;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3252,378,0 chrIX 35597 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=6.585;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;MQRankSum=0.760;QD=18.01;ReadPosRankSum=1.711;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2987,357,0 chrIX 35628 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=147.3051;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=14.04;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2392,267,0 chrIX 35674 . T C 2298 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;MQRankSum=-1.181;QD=11.38;ReadPosRankSum=1.715;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:2331,276,0 chrIX 35677 . G A 2210 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=11.63;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2243,255,0 chrIX 35679 . G C 2144 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=11.28;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:2177,255,0 chrIX 35689 . T C 1987 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.8198;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=10.19;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:2020,237,0 chrIX 35691 . T C 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=33.40;MQ0=0;MQRankSum=-1.644;QD=9.88;ReadPosRankSum=1.714;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:1980,240,0 chrIX 35770 . T C 3699.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=3.841;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;MQRankSum=1.077;QD=18.40;ReadPosRankSum=1.715;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3699,435,0 chrIX 35773 . T G 3721.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=192;Dels=0.00;FS=7.528;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=0.697;QD=19.38;ReadPosRankSum=2.411;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3721,432,0 chrIX 35774 . T C 3641.01 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=18.87;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3641,429,0 chrIX 35955 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=20.60;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2814,333,0 chrIX 35986 . T C 2418 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=20.84;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2451,291,0 chrIX 35999 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=19.71;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2221,264,0 chrIX 36025 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;QD=20.55;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2232,258,0 chrIX 36046 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=20.00;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2173,243,0 chrIX 36051 . A T 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;MQRankSum=-1.408;QD=19.25;ReadPosRankSum=1.667;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2093,234,0 chrIX 36063 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=16.75;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1926,231,0 chrIX 36077 . A G 2087 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=17.69;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2120,246,0 chrIX 36103 . G A 2133 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=18.23;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2166,249,0 chrIX 36166 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.14;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2717,303,0 chrIX 36197 . A G 2233 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.07;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2266,267,0 chrIX 36222 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.65;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1959,240,0 chrIX 36267 . G C 1236 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=16.70;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1269,150,0 chrIX 36277 . G A 1261 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=14.33;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1294,153,0 chrIX 36296 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=16.08;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1609,186,0 chrIX 36317 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=3.036;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.350;QD=16.68;ReadPosRankSum=2.407;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:1984,228,0 chrIX 36417 . G C 2290 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=21.81;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2323,270,0 chrIX 36442 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=21.50;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2377,267,0 chrIX 36541 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=23.10;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2851,324,0 chrIX 36580 . A C 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.705;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;MQRankSum=-1.431;QD=21.69;ReadPosRankSum=1.672;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2527,300,0 chrIX 36611 . C A 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.200;DP=86;Dels=0.00;FS=2.522;HaplotypeScore=76.7727;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=0.282;QD=0.56;ReadPosRankSum=2.824;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:9:80,9,0 chrIX 36639 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=13.82;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1291,144,0 chrIX 36676 . A G 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.121;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;MQRankSum=-1.703;QD=11.02;ReadPosRankSum=1.703;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1344,156,0 chrIX 36679 . A G 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=6.208;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;MQRankSum=-2.366;QD=11.34;ReadPosRankSum=2.408;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1371,159,0 chrIX 36690 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=11.50;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1425,159,0 chrIX 36691 . T C 1348 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=11.14;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1381,159,0 chrIX 36702 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=11.39;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1491,168,0 chrIX 36732 . C T 1957 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=15.78;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1990,225,0 chrIX 36735 . G C 1889 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=15.87;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1922,222,0 chrIX 36737 . T C 1754 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=14.74;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1787,221,0 chrIX 36738 . C A 1842 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=15.48;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1875,219,0 chrIX 36760 . T C 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=5.883;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;MQRankSum=-0.242;QD=13.30;ReadPosRankSum=1.695;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1270,150,0 chrIX 36775 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=12.88;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1205,141,0 chrIX 36780 . G T 1262 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=14.51;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1295,147,0 chrIX 36792 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=12.06;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1010,114,0 chrIX 36801 . A G 685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=70;Dels=0.00;FS=5.825;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=1.392;QD=9.79;ReadPosRankSum=2.900;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:84:718,84,0 chrIX 36833 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;QD=13.84;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1223,150,0 chrIX 36855 . A G 1474 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;QD=14.59;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1507,183,0 chrIX 36860 . G C 1630 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;QD=15.23;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1663,201,0 chrIX 36872 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;QD=16.85;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1836,213,0 chrIX 36971 . G T 1144 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=16.11;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1177,132,0 chrIX 36978 . G C 1059 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=15.13;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1092,132,0 chrIX 36986 . G T 1249 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=16.01;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1282,144,0 chrIX 37068 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=21.28;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1799,207,0 chrIX 37170 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.85;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1383,162,0 chrIX 37222 . T A 1090 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.03;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1123,126,0 chrIX 37314 . A T 582.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.394;DP=147;Dels=0.00;FS=4.803;HaplotypeScore=128.0310;MLEAC=1;MLEAF=0.500;MQ=41.44;MQ0=0;MQRankSum=-2.275;QD=3.96;ReadPosRankSum=-0.063;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:95,52:147:99:612,0,1641 chrIX 37357 . A G 1922.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=29.2496;MLEAC=1;MLEAF=0.500;MQ=34.09;MQ0=0;MQRankSum=-1.462;QD=8.28;ReadPosRankSum=2.239;SB=-4.200e+02 GT:AD:DP:GQ:PL 0/1:113,115:232:99:1952,0,2133 chrIX 37429 . C T 8590.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;QD=24.06;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,357:357:99:8590,1001,0 chrIX 37438 . T A 3930.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;DP=367;Dels=0.00;FS=6.660;HaplotypeScore=15.7189;MLEAC=1;MLEAF=0.500;MQ=32.28;MQ0=0;MQRankSum=-2.391;QD=10.71;ReadPosRankSum=2.909;SB=-6.640e+02 GT:AD:DP:GQ:PL 0/1:156,211:367:99:3930,0,2622 chrIX 37486 . A T 2740.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728;DP=282;Dels=0.00;FS=12.356;HaplotypeScore=7.4654;MLEAC=1;MLEAF=0.500;MQ=31.86;MQ0=0;MQRankSum=-2.334;QD=9.72;ReadPosRankSum=-1.326;SB=-8.420e+02 GT:AD:DP:GQ:PL 0/1:125,157:282:99:2770,0,2270 chrIX 37498 . C T 5098.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;QD=21.33;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5098,596,0 chrIX 37519 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=20.11;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4787,549,0 chrIX 37533 . A C 3832.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=241;Dels=0.00;FS=5.226;HaplotypeScore=4.6616;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;MQRankSum=-1.956;QD=15.90;ReadPosRankSum=3.403;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:4,237:241:99:3832,455,0 chrIX 37540 . T A 2856 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=14.35;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:2889,339,0 chrIX 37542 . C G 2806 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;QD=14.39;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:2839,330,0 chrIX 37543 . C T 2669 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;QD=13.69;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:2702,324,0 chrIX 37555 . G C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=11.66;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:3276,387,0 chrIX 37564 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=339;Dels=0.00;FS=2.875;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;MQRankSum=1.943;QD=11.73;ReadPosRankSum=2.435;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:2,337:339:99:3978,465,0 chrIX 37570 . C T 4686.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=12.70;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:0,369:369:99:4686,525,0 chrIX 37582 . C T 4605.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=404;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=11.40;SB=-4.264e+03 GT:AD:DP:GQ:PL 1/1:0,404:404:99:4605,531,0 chrIX 37585 . A T 4758.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=420;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=11.33;SB=-4.567e+03 GT:AD:DP:GQ:PL 1/1:0,419:420:99:4758,534,0 chrIX 37592 . A T 4906.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.438;DP=433;Dels=0.00;FS=2.907;HaplotypeScore=6.0146;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=1.388;QD=11.33;ReadPosRankSum=2.438;SB=-4.506e+03 GT:AD:DP:GQ:PL 1/1:2,430:432:99:4906,555,0 chrIX 37593 . C T 4761.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=431;Dels=0.00;FS=0.000;HaplotypeScore=4.4372;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=11.05;SB=-4.676e+03 GT:AD:DP:GQ:PL 1/1:0,431:431:99:4761,552,0 chrIX 37598 . T C 4549.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.438;DP=439;Dels=0.00;FS=7.379;HaplotypeScore=4.3938;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=1.774;QD=10.36;ReadPosRankSum=2.438;SB=-4.619e+03 GT:AD:DP:GQ:PL 1/1:2,437:439:99:4549,522,0 chrIX 37600 . G C 4553.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=439;Dels=0.00;FS=0.000;HaplotypeScore=4.3938;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=10.37;SB=-4.767e+03 GT:AD:DP:GQ:PL 1/1:0,439:439:99:4553,522,0 chrIX 37603 . T C 4578.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=473;Dels=0.00;FS=3.547;HaplotypeScore=6.1725;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=-0.121;QD=9.68;ReadPosRankSum=1.725;SB=-5.126e+03 GT:AD:DP:GQ:PL 1/1:1,472:473:99:4578,528,0 chrIX 37609 . C T 4775.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=483;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=9.89;SB=-5.304e+03 GT:AD:DP:GQ:PL 1/1:0,483:483:99:4775,531,0 chrIX 37621 . C G 4477.01 filter AC=2;AF=1.00;AN=2;DP=508;Dels=0.00;FS=0.000;HaplotypeScore=3.7391;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=8.81;SB=-5.365e+03 GT:AD:DP:GQ:PL 1/1:0,508:508:99:4477,522,0 chrIX 37634 . A C 5150.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.725;DP=497;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;MQRankSum=0.275;QD=10.36;ReadPosRankSum=1.725;SB=-5.435e+03 GT:AD:DP:GQ:PL 1/1:1,496:497:99:5150,611,0 chrIX 37636 . T C 5071.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.986;DP=499;Dels=0.00;FS=10.763;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;MQRankSum=0.468;QD=10.16;ReadPosRankSum=2.986;SB=-5.551e+03 GT:AD:DP:GQ:PL 1/1:3,496:499:99:5071,585,0 chrIX 37640 . G C 4827.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=517;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=9.34;SB=-5.678e+03 GT:AD:DP:GQ:PL 1/1:0,517:517:99:4827,564,0 chrIX 37646 . C G 4541.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=496;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=9.16;SB=-5.509e+03 GT:AD:DP:GQ:PL 1/1:1,495:496:99:4541,534,0 chrIX 37651 . C T 3773.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=451;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=8.37;SB=-5.332e+03 GT:AD:DP:GQ:PL 1/1:0,451:451:99:3773,441,0 chrIX 37652 . A G 3766.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=451;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=8.35;SB=-5.391e+03 GT:AD:DP:GQ:PL 1/1:0,450:451:99:3766,441,0 chrIX 37663 . T G 3555.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.980;DP=441;Dels=0.00;FS=9.120;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=-0.005;QD=8.06;ReadPosRankSum=2.984;SB=-5.217e+03 GT:AD:DP:GQ:PL 1/1:3,438:441:99:3555,425,0 chrIX 37675 . C G 3354.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=8.14;SB=-4.576e+03 GT:AD:DP:GQ:PL 1/1:0,412:412:99:3354,396,0 chrIX 37678 . T C 2950 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=389;Dels=0.00;FS=2.986;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;MQRankSum=0.911;QD=7.58;ReadPosRankSum=2.437;SB=-4.268e+03 GT:AD:DP:GQ:PL 1/1:2,387:389:99:2983,351,0 chrIX 37681 . A T 2840 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=378;Dels=0.00;FS=7.162;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;MQRankSum=-0.386;QD=7.51;ReadPosRankSum=2.437;SB=-3.924e+03 GT:AD:DP:GQ:PL 1/1:2,376:378:99:2873,344,0 chrIX 37689 . T A 2826 SnpCluster AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=8.59;SB=-3.513e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:2859,341,0 chrIX 37690 . C T 2949 SnpCluster AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=8.96;SB=-3.515e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:2982,342,0 chrIX 37696 . C T 3012 SnpCluster AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=9.33;SB=-3.268e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:3045,354,0 chrIX 37699 . C G 2811 SnpCluster AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=8.95;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:2844,341,0 chrIX 37706 . G A 2824 SnpCluster AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=0;QD=9.17;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,308:308:99:2857,341,0 chrIX 37711 . T C 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=300;Dels=0.00;FS=5.534;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;MQRankSum=0.936;QD=9.31;ReadPosRankSum=2.977;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:3,297:300:99:2826,341,0 chrIX 37723 . G T 2880 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=19.5993;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=10.03;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:2913,356,0 chrIX 37786 . C T 7147.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=20.48;SB=-3.812e+03 GT:AD:DP:GQ:PL 1/1:0,349:349:99:7147,848,0 chrIX 37792 . T A 7526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=354;Dels=0.00;FS=4.060;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;MQRankSum=0.988;QD=21.26;ReadPosRankSum=1.703;SB=-3.491e+03 GT:AD:DP:GQ:PL 1/1:1,353:354:99:7526,878,0 chrIX 37816 . C T 1041.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.262;DP=370;Dels=0.00;FS=0.451;HaplotypeScore=14.8755;MLEAC=1;MLEAF=0.500;MQ=30.96;MQ0=0;MQRankSum=-1.389;QD=2.81;ReadPosRankSum=0.793;SB=-4.120e+02 GT:AD:DP:GQ:PL 0/1:279,91:370:99:1071,0,5222 chrIX 37822 . T C 8557.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=392;Dels=0.00;FS=12.891;HaplotypeScore=25.0736;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;MQRankSum=-0.603;QD=21.83;ReadPosRankSum=2.941;SB=-3.384e+03 GT:AD:DP:GQ:PL 1/1:3,388:392:99:8557,998,0 chrIX 37925 . C A 6718.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=5.8746;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=0;QD=19.53;SB=-3.905e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:6718,779,0 chrIX 37942 . G A 5869.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;QD=18.34;SB=-3.519e+03 GT:AD:DP:GQ:PL 1/1:0,319:320:99:5869,680,0 chrIX 37960 . C T 5162.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=15.83;SB=-3.888e+03 GT:AD:DP:GQ:PL 1/1:0,322:326:99:5162,588,0 chrIX 37984 . T G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=307;Dels=0.00;FS=7.962;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;MQRankSum=1.414;QD=11.45;ReadPosRankSum=3.399;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:4,302:307:99:3516,419,0 chrIX 37987 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.723;DP=312;Dels=0.00;FS=7.938;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;MQRankSum=0.740;QD=11.15;ReadPosRankSum=3.833;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:5,306:312:99:3478,422,0 chrIX 38011 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;QD=12.03;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:3791,444,0 chrIX 38041 . C T 4251.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=12.84;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:0,329:331:99:4251,477,0 chrIX 38053 . A G 4243.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;QD=12.44;SB=-3.485e+03 GT:AD:DP:GQ:PL 1/1:0,341:341:99:4243,489,0 chrIX 38059 . A C 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=346;Dels=0.00;FS=3.659;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;MQRankSum=-1.732;QD=12.15;ReadPosRankSum=1.722;SB=-3.626e+03 GT:AD:DP:GQ:PL 1/1:1,345:346:99:4203,503,0 chrIX 38068 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=357;Dels=0.00;FS=2.954;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=0.533;QD=12.02;ReadPosRankSum=2.436;SB=-3.854e+03 GT:AD:DP:GQ:PL 1/1:2,355:357:99:4290,512,0 chrIX 38079 . C G 4659.01 filter AC=2;AF=1.00;AN=2;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=12.59;SB=-4.273e+03 GT:AD:DP:GQ:PL 1/1:0,370:370:99:4659,543,0 chrIX 38095 . C T 4173.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=10.78;SB=-4.140e+03 GT:AD:DP:GQ:PL 1/1:0,387:387:99:4173,497,0 chrIX 38101 . T C 4443.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;MQRankSum=-1.648;QD=11.94;ReadPosRankSum=1.723;SB=-4.285e+03 GT:AD:DP:GQ:PL 1/1:1,371:372:99:4443,516,0 chrIX 38102 . T C 4570.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=379;Dels=0.00;FS=5.944;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;MQRankSum=-2.812;QD=12.06;ReadPosRankSum=2.923;SB=-4.389e+03 GT:AD:DP:GQ:PL 1/1:3,376:379:99:4570,534,0 chrIX 38122 . T C 4702.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=404;Dels=0.00;FS=5.704;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;MQRankSum=-2.624;QD=11.64;ReadPosRankSum=2.983;SB=-4.104e+03 GT:AD:DP:GQ:PL 1/1:3,401:404:99:4702,554,0 chrIX 38140 . T A 5388.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=417;Dels=0.00;FS=0.000;HaplotypeScore=18.3884;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;MQRankSum=-1.590;QD=12.92;ReadPosRankSum=1.724;SB=-4.302e+03 GT:AD:DP:GQ:PL 1/1:1,416:417:99:5388,630,0 chrIX 38269 . T A 10361.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=462;Dels=0.00;FS=0.000;HaplotypeScore=28.8476;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-1.012;QD=22.43;ReadPosRankSum=1.680;SB=-4.949e+03 GT:AD:DP:GQ:PL 1/1:1,461:462:99:10361,1202,0 chrIX 38353 . A G 11662.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=524;Dels=0.00;FS=12.531;HaplotypeScore=34.4348;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=2.519;QD=22.26;ReadPosRankSum=3.360;SB=-6.314e+03 GT:AD:DP:GQ:PL 1/1:4,519:524:99:11662,1349,0 chrIX 38460 . A G 10622.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=510;Dels=0.00;FS=13.084;HaplotypeScore=19.6819;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.706;QD=20.83;ReadPosRankSum=3.380;SB=-5.798e+03 GT:AD:DP:GQ:PL 1/1:4,504:510:99:10622,1229,0 chrIX 38467 . T C 10100.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.331;DP=516;Dels=0.00;FS=26.214;HaplotypeScore=14.8776;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.122;QD=19.57;ReadPosRankSum=5.223;SB=-6.172e+03 GT:AD:DP:GQ:PL 1/1:10,503:516:99:10100,1143,0 chrIX 38988 . T C 1473.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DP=287;Dels=0.00;FS=12.820;HaplotypeScore=15.2974;MLEAC=1;MLEAF=0.500;MQ=54.98;MQ0=0;MQRankSum=-1.259;QD=5.13;ReadPosRankSum=-1.274;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:169,117:287:99:1503,0,2569 chrIX 39041 . A T 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=78.8350;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.443;QD=21.18;ReadPosRankSum=1.716;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4575,522,0 chrIX 39076 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.65;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3789,441,0 chrIX 39139 . C T 1244.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.793;DP=95;Dels=0.00;FS=4.518;HaplotypeScore=11.0850;MLEAC=1;MLEAF=0.500;MQ=49.58;MQ0=0;MQRankSum=1.679;QD=13.09;ReadPosRankSum=-1.060;SB=-5.750e+02 GT:AD:DP:GQ:PL 0/1:27,68:95:99:1274,0,387 chrIX 39143 . G A 334.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.875;DP=95;Dels=0.00;FS=6.008;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=49.52;MQ0=0;MQRankSum=-1.887;QD=3.52;ReadPosRankSum=0.481;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:66,29:95:99:364,0,1139 chrIX 39175 . A G 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;DP=71;Dels=0.00;FS=97.035;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=48.62;MQ0=0;MQRankSum=-4.706;QD=2.77;ReadPosRankSum=-6.021;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:43,27:71:99:227,0,845 chrIX 39244 . A G 1460 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.33;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1493,171,0 chrIX 39277 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.44;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1674,195,0 chrIX 39362 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=17.93;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1396,165,0 chrIX 39367 . A T 1431 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=176.8710;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=18.35;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1464,165,0 chrIX 39393 . T G 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=3.057;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=-0.072;QD=15.62;ReadPosRankSum=2.305;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1361,162,0 chrIX 39559 . C A 1571 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=14.96;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:1604,183,0 chrIX 40140 . A G 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=105;Dels=0.00;FS=3.226;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.454;QD=19.70;ReadPosRankSum=1.698;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2101,237,0 chrIX 40145 . G A 1883 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.83;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1916,219,0 chrIX 40190 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=127;Dels=0.00;FS=15.759;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.105;QD=18.66;ReadPosRankSum=2.944;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:3,122:127:99:2403,276,0 chrIX 40512 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.88;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4354,489,0 chrIX 40593 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.17;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1860,213,0 chrIX 40898 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.04;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3570,399,0 chrIX 40928 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.82;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3605,405,0 chrIX 40953 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.73;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3442,390,0 chrIX 41223 . A G 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.344;QD=20.48;ReadPosRankSum=1.708;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2962,348,0 chrIX 41276 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.98;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3054,348,0 chrIX 41337 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.07;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2835,336,0 chrIX 41386 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.18;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2118,237,0 chrIX 41415 . A G 2008 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.12;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2041,237,0 chrIX 41439 . A G 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.296;QD=18.64;ReadPosRankSum=1.655;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2549,297,0 chrIX 41532 . A G 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=142;Dels=0.00;FS=5.856;HaplotypeScore=10.4108;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.248;QD=22.15;ReadPosRankSum=2.951;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3178,375,0 chrIX 41664 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.87;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2636,294,0 chrIX 41898 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.325;QD=22.37;ReadPosRankSum=1.669;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3691,426,0 chrIX 41980 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.191;QD=20.83;ReadPosRankSum=1.667;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3332,393,0 chrIX 42365 . A G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.108;QD=23.50;ReadPosRankSum=1.696;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2289,261,0 chrIX 42595 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2853,318,0 chrIX 42679 . T C 2168 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2201,261,0 chrIX 42866 . C G 1945 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1978,228,0 chrIX 43493 . T C 2265 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.88;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2298,264,0 chrIX 43748 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.05;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1557,174,0 chrIX 43753 . C A 1460 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.28;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1493,168,0 chrIX 43949 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=23.29;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2269,255,0 chrIX 44092 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=18.19;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1452,162,0 chrIX 44230 . A T 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=16.7299;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.014;QD=18.49;ReadPosRankSum=1.703;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2289,264,0 chrIX 44293 . G A 394 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6385;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=2.98;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,128:132:51:427,51,0 chrIX 44308 . C T 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;MQRankSum=-0.860;QD=8.61;ReadPosRankSum=0.962;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:1196,119,0 chrIX 44331 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=10.48;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:1437,165,0 chrIX 44800 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.40;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2981,330,0 chrIX 44979 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.38;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2540,294,0 chrIX 45096 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.19;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2500,285,0 chrIX 45203 . A G 1849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.058;QD=20.78;ReadPosRankSum=1.654;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1882,222,0 chrIX 45244 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.79;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1953,234,0 chrIX 45259 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.61;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2197,255,0 chrIX 45367 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=20.64;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1478,168,0 chrIX 45421 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.86;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1748,195,0 chrIX 45530 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.87;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2220,249,0 chrIX 45559 . A C 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.696;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.499;QD=18.89;ReadPosRankSum=1.654;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1714,204,0 chrIX 45691 . T G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.68;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3296,378,0 chrIX 45705 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.23;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3424,384,0 chrIX 45746 . A G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=4.320;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.020;QD=20.94;ReadPosRankSum=1.661;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3090,354,0 chrIX 45805 . T C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.468;QD=23.21;ReadPosRankSum=1.653;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3074,354,0 chrIX 45859 . C T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.18;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4335,489,0 chrIX 45886 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=184;Dels=0.00;FS=5.548;HaplotypeScore=6.6129;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.293;QD=21.15;ReadPosRankSum=2.851;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3891,447,0 chrIX 46057 . C G 2628 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.91;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2661,318,0 chrIX 46102 . C A 2773 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.50;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2806,312,0 chrIX 46131 . A G 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=4.771;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.295;QD=20.14;ReadPosRankSum=1.701;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2309,276,0 chrIX 46174 . A G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=13.257;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.823;QD=20.96;ReadPosRankSum=2.392;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2716,312,0 chrIX 46189 . T C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.2137;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.155;QD=19.60;ReadPosRankSum=1.684;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2895,339,0 chrIX 46556 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.6337;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.49;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4273,474,0 chrIX 46638 . G C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.21;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3554,420,0 chrIX 46667 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.3924;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.56;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3536,417,0 chrIX 46692 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.73;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3705,420,0 chrIX 46720 . C G 2757 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.88;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2790,321,0 chrIX 46981 . A G 2610 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.10;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2643,303,0 chrIX 47054 . G T 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.613;QD=22.82;ReadPosRankSum=-0.259;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2018,234,0 chrIX 47493 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.69;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3579,414,0 chrIX 47519 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=8.975;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.203;QD=19.42;ReadPosRankSum=2.399;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3748,432,0 chrIX 47656 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=18.4657;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.93;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4321,498,0 chrIX 47766 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.71;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4221,468,0 chrIX 47916 . T C 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=154;Dels=0.00;FS=18.855;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.830;QD=19.48;ReadPosRankSum=2.955;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3033,360,0 chrIX 48222 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.37;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3529,411,0 chrIX 48252 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.03;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3823,429,0 chrIX 48606 . C T 4742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.317;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.836;QD=20.35;ReadPosRankSum=-1.952;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:4742,511,0 chrIX 48626 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.1177;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=1.270;QD=20.05;ReadPosRankSum=0.005;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4672,490,0 chrIX 48693 . A G 4605.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=10.4117;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.27;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:4605,540,0 chrIX 48699 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.7187;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=1.231;QD=18.30;ReadPosRankSum=0.744;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:1,241:244:99:4464,525,0 chrIX 48813 . A G 4647.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.71;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4647,540,0 chrIX 48876 . A C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.72;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3527,414,0 chrIX 48879 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=18.40;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3607,414,0 chrIX 49143 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2658;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.56;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2989,339,0 chrIX 49272 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.89;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1976,228,0 chrIX 49521 . G A 775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.867;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=108.4214;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;MQRankSum=0.956;QD=5.74;ReadPosRankSum=-0.774;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:93:808,93,0 chrIX 49550 . T C 1339 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=9.56;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1372,159,0 chrIX 49641 . T G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=163;Dels=0.00;FS=2.881;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.339;QD=20.35;ReadPosRankSum=2.404;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3317,396,0 chrIX 51046 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7219;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.48;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3225,360,0 chrIX 51129 . C G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.88;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3317,381,0 chrIX 51147 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.40;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3339,396,0 chrIX 51323 . T C 67.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.334;DP=131;Dels=0.00;FS=6.719;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=55.48;MQ0=0;MQRankSum=-0.164;QD=0.51;ReadPosRankSum=-5.517;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:119,12:131:26:97,0,26 chrIX 51326 . T C 50.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.252;DP=134;Dels=0.00;FS=2.213;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=1.632;QD=0.38;ReadPosRankSum=4.314;SB=-4.974e+02 GT:AD:DP:GQ:PL 0/1:7,124:134:7:80,0,7 chrIX 51375 . T C 1857 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.41;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1890,219,0 chrIX 51702 . C T 1302 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1335,153,0 chrIX 51730 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6983;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.86;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2013,222,0 chrIX 52260 . G A 5987.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.93;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5987,693,0 chrIX 53016 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.87;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4273,503,0 chrIX 53091 . G C 4402.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=17.97;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,241:245:99:4402,527,0 chrIX 53103 . A G 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=234;Dels=0.00;FS=3.028;HaplotypeScore=8.7873;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=1.133;QD=18.16;ReadPosRankSum=2.365;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4250,495,0 chrIX 53238 . T C 4736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=227;Dels=0.00;FS=6.042;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.391;QD=20.86;ReadPosRankSum=2.942;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:4736,555,0 chrIX 53717 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=193;Dels=0.00;FS=2.836;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.714;QD=21.35;ReadPosRankSum=2.424;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4121,483,0 chrIX 53783 . T G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=188;Dels=0.00;FS=4.062;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.782;QD=22.27;ReadPosRankSum=1.713;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4186,489,0 chrIX 53832 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.54;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2639,303,0 chrIX 54480 . T C 5773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=308;Dels=0.00;FS=5.382;HaplotypeScore=27.7317;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.534;QD=18.74;ReadPosRankSum=1.816;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:3,303:308:99:5773,660,0 chrIX 55071 . C A 2828 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.78;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2861,327,0 chrIX 55251 . G A 8859.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=33.4151;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.25;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,379:381:99:8859,987,0 chrIX 55362 . C G 9875.01 filter AC=2;AF=1.00;AN=2;DP=477;Dels=0.00;FS=0.000;HaplotypeScore=23.8009;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.70;SB=-3.452e+03 GT:AD:DP:GQ:PL 1/1:0,476:477:99:9875,1195,0 chrIX 55461 . A T 10117.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.555;DP=557;Dels=0.00;FS=11.554;HaplotypeScore=32.7224;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.071;QD=18.16;ReadPosRankSum=3.792;SB=-5.890e+03 GT:AD:DP:GQ:PL 1/1:5,552:557:99:10117,1170,0 chrIX 55678 . A C 7653.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=395;Dels=0.00;FS=2.943;HaplotypeScore=35.1218;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=1.251;QD=19.37;ReadPosRankSum=2.393;SB=-4.166e+03 GT:AD:DP:GQ:PL 1/1:2,391:395:99:7653,891,0 chrIX 55716 . T C 6427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.190;DP=348;Dels=0.00;FS=13.707;HaplotypeScore=43.6396;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.425;QD=18.47;ReadPosRankSum=3.437;SB=-3.440e+03 GT:AD:DP:GQ:PL 1/1:4,342:348:99:6427,773,0 chrIX 55837 . T C 5862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=296;Dels=0.00;FS=9.966;HaplotypeScore=20.3252;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-2.025;QD=19.80;ReadPosRankSum=2.383;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,293:296:99:5862,672,0 chrIX 56514 . G C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.77;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3328,387,0 chrIX 57063 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.36;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3097,351,0 chrIX 57096 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.89;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2940,327,0 chrIX 57153 . C T 2494 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.79;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2527,300,0 chrIX 57173 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.73;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2604,291,0 chrIX 57568 . G C 3526.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.26;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3526,414,0 chrIX 57758 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.39;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3915,462,0 chrIX 57773 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.130;QD=19.12;ReadPosRankSum=1.658;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3557,420,0 chrIX 57794 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.75;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3515,416,0 chrIX 57929 . C T 3927.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=19.0793;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.89;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3927,459,0 chrIX 58130 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3497,393,0 chrIX 58256 . C G 2898 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.9207;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.00;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2931,350,0 chrIX 58630 . A G 2433 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.95;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2466,282,0 chrIX 58961 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2832,315,0 chrIX 59552 . T G 2511 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.10;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2544,297,0 chrIX 59555 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.97;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2570,291,0 chrIX 59639 . T A 2565 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2598,291,0 chrIX 60280 . T C 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.860;QD=20.70;ReadPosRankSum=1.706;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2828,330,0 chrIX 60351 . C T 3876.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.5821;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.78;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3876,438,0 chrIX 60434 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.99;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3034,357,0 chrIX 60844 . T C 2888 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2921,348,0 chrIX 60879 . A C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=153;Dels=0.00;FS=6.025;HaplotypeScore=11.2072;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.583;QD=18.99;ReadPosRankSum=2.954;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:2939,342,0 chrIX 61323 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.20;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1744,201,0 chrIX 61466 . C A 2809 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2842,327,0 chrIX 61787 . T C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=142;Dels=0.00;FS=6.497;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.270;QD=21.55;ReadPosRankSum=2.415;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3093,360,0 chrIX 62057 . A C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3283,387,0 chrIX 62207 . G C 3524.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3524,405,0 chrIX 63202 . T C 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.195;QD=22.31;ReadPosRankSum=1.708;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3224,372,0 chrIX 63470 . A G 2307 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.89;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2340,273,0 chrIX 63655 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=115;Dels=0.00;FS=3.168;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.206;QD=20.38;ReadPosRankSum=1.701;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,111:115:99:2377,276,0 chrIX 63781 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.16;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2130,246,0 chrIX 64048 . T C 2446 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.46;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2479,285,0 chrIX 64057 . C A 2150 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=20.09;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2183,258,0 chrIX 64203 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.13;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2188,246,0 chrIX 64231 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.06;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1996,228,0 chrIX 64250 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.35;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1966,228,0 chrIX 64310 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.19;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2341,264,0 chrIX 64375 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=125;Dels=0.00;FS=6.119;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.331;QD=20.09;ReadPosRankSum=2.896;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2544,303,0 chrIX 64588 . A G 2917 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2950,354,0 chrIX 64705 . A G 3190 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3223,372,0 chrIX 64892 . T G 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=6.763;HaplotypeScore=11.4087;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.811;QD=19.90;ReadPosRankSum=2.415;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2839,324,0 chrIX 64944 . C T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.11;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4157,471,0 chrIX 65319 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.76;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2923,327,0 chrIX 65341 . T C 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.358;QD=21.46;ReadPosRankSum=1.703;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2630,309,0 chrIX 65368 . T C 2381 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.07;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2414,276,0 chrIX 65399 . T A 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=3.771;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.268;QD=19.69;ReadPosRankSum=1.670;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2238,255,0 chrIX 65518 . C A 2483 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.35;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2516,288,0 chrIX 65587 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.74;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2418,276,0 chrIX 65755 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.65;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2718,309,0 chrIX 65758 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.21;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2920,330,0 chrIX 65889 . T A 2779 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=24.17;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2812,315,0 chrIX 66115 . T A 1836 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.96;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1869,216,0 chrIX 66117 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.29;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1879,225,0 chrIX 67222 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.58;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2407,279,0 chrIX 67321 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.15;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2254,261,0 chrIX 67392 . T C 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=88;Dels=0.00;FS=7.032;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.374;QD=18.57;ReadPosRankSum=2.393;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1667,198,0 chrIX 67395 . A T 1699 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.23;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1732,195,0 chrIX 67439 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.64;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1748,201,0 chrIX 67951 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.90;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3417,384,0 chrIX 68149 . G T 2241 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.6683;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2274,264,0 chrIX 68186 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.57;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2686,303,0 chrIX 68384 . A T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.83;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3789,420,0 chrIX 68461 . A G 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.245;QD=22.22;ReadPosRankSum=1.695;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4111,480,0 chrIX 68548 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.245;QD=19.09;ReadPosRankSum=1.713;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3513,405,0 chrIX 68666 . T A 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=131;Dels=0.00;FS=10.314;HaplotypeScore=9.3725;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.274;QD=19.64;ReadPosRankSum=2.223;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2606,306,0 chrIX 68857 . A G 1996 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.01;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2029,231,0 chrIX 69033 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.01;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1611,183,0 chrIX 69064 . T C 1803 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.21;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1836,213,0 chrIX 69138 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=107;Dels=0.00;FS=2.695;HaplotypeScore=94.7156;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.334;QD=21.10;ReadPosRankSum=2.404;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2291,267,0 chrIX 69624 . C A 724 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.57;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:84:757,84,0 chrIX 69651 . A G 382 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=15.92;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:415,48,0 chrIX 69658 . T C 357 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=14.28;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:45:390,45,0 chrIX 69770 . T G 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.166;QD=20.41;ReadPosRankSum=1.637;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1523,180,0 chrIX 69789 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.00;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1648,198,0 chrIX 69950 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.18;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3524,408,0 chrIX 70241 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=128;Dels=0.00;FS=6.475;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.720;QD=21.89;ReadPosRankSum=2.373;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2835,333,0 chrIX 70443 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2793,318,0 chrIX 70499 . G T 2975 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.66;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3008,342,0 chrIX 70598 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.48;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3769,438,0 chrIX 70775 . A G 6019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=252;Dels=0.00;FS=8.196;HaplotypeScore=12.7762;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.589;QD=23.88;ReadPosRankSum=2.410;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:6019,693,0 chrIX 70877 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.19;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3452,402,0 chrIX 70904 . C T 4208.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.15;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4208,477,0 chrIX 70960 . C T 4574.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.63;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4574,540,0 chrIX 70962 . G A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.73;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4675,537,0 chrIX 71060 . G C 3050 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.48;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3083,357,0 chrIX 71177 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.88;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3254,375,0 chrIX 71378 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.74;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3653,423,0 chrIX 71380 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.05;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3726,414,0 chrIX 71504 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=5.465;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.669;QD=21.81;ReadPosRankSum=1.712;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3861,441,0 chrIX 71768 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.52;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3209,369,0 chrIX 72005 . G C 4670.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.89;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4670,554,0 chrIX 72212 . G T 4666.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.31;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4666,525,0 chrIX 72405 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.51;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3592,405,0 chrIX 72464 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=8.300;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.987;QD=23.25;ReadPosRankSum=2.419;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3790,435,0 chrIX 72564 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6725;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=15.54;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2488,285,0 chrIX 72570 . G T 2189 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;QD=14.69;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2222,261,0 chrIX 72581 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;QD=13.98;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1836,216,0 chrIX 72586 . G C 1693 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=13.54;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1726,198,0 chrIX 72621 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=15.96;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2267,252,0 chrIX 72833 . G A 4381.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.6309;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.24;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4381,501,0 chrIX 73658 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.94;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2809,315,0 chrIX 73686 . T A 2433 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6885;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.34;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2466,279,0 chrIX 73841 . T C 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=3.882;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.354;QD=19.70;ReadPosRankSum=1.693;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1767,210,0 chrIX 73849 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.35;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1666,195,0 chrIX 73899 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=18.62;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1821,213,0 chrIX 73949 . A G 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=89;Dels=0.00;FS=2.819;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=2.007;QD=21.31;ReadPosRankSum=2.367;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1930,225,0 chrIX 74066 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.37;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1926,216,0 chrIX 74155 . C G 1436 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.12;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1469,171,0 chrIX 74241 . A G 1739 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1772,210,0 chrIX 74340 . A G 3003 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.6781;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.46;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3036,351,0 chrIX 74408 . G T 2286 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.57;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2319,261,0 chrIX 74472 . A G 1743 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.81;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1776,207,0 chrIX 74541 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.7526;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.04;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3162,366,0 chrIX 74723 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.30;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2078,231,0 chrIX 75152 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.83;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4296,483,0 chrIX 75717 . T C 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=6.112;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.263;QD=20.28;ReadPosRankSum=1.714;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3935,467,0 chrIX 75847 . T C 2009 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=15.70;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2042,234,0 chrIX 75941 . A G 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.805;QD=23.04;ReadPosRankSum=1.683;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1669,192,0 chrIX 76162 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.51;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2596,297,0 chrIX 76340 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.99;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3816,429,0 chrIX 76381 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.86;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2853,339,0 chrIX 76848 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.3715;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.18;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3290,369,0 chrIX 76900 . C T 4605.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.1401;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.82;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4605,519,0 chrIX 77020 . C T 5722.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.01;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5722,654,0 chrIX 77331 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.41;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3407,378,0 chrIX 77497 . C A 3092 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7073;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.03;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3125,357,0 chrIX 77546 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=144;Dels=0.00;FS=2.900;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.179;QD=22.01;ReadPosRankSum=2.398;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3202,375,0 chrIX 77594 . T G 3808.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.40;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3808,441,0 chrIX 78985 . A G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.629;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.506;QD=22.78;ReadPosRankSum=1.701;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2607,306,0 chrIX 79502 . A G 2002 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2035,243,0 chrIX 79550 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=3.802;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.619;QD=22.74;ReadPosRankSum=1.691;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1943,225,0 chrIX 79584 . G C 1927 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1960,225,0 chrIX 79636 . T C 2169 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2202,258,0 chrIX 79786 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.45;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1856,213,0 chrIX 79822 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.55;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1917,219,0 chrIX 79996 . A G 1337 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.92;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1370,159,0 chrIX 80199 . C T 383 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.41;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:416,48,0 chrIX 82232 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.39;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2884,324,0 chrIX 82237 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.36;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2915,321,0 chrIX 82538 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3736,417,0 chrIX 82899 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3570,423,0 chrIX 83067 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.08;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3416,393,0 chrIX 83104 . A C 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.207;QD=22.13;ReadPosRankSum=1.680;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2999,345,0 chrIX 83252 . C T 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.9850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.651;QD=23.40;ReadPosRankSum=1.705;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3051,342,0 chrIX 83517 . C G 4811.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.7429;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.17;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4811,572,0 chrIX 83571 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.66;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4419,522,0 chrIX 83640 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.5257;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3715,443,0 chrIX 83707 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.6423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.230;QD=20.76;ReadPosRankSum=1.715;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4338,498,0 chrIX 84138 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.010;QD=22.43;ReadPosRankSum=1.712;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3790,450,0 chrIX 85680 . C T 4702.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.1026;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.97;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4702,528,0 chrIX 85758 . G A 5517.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.06;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5517,633,0 chrIX 85860 . T C 5036.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.28;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5036,576,0 chrIX 86070 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3648,420,0 chrIX 86442 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.7856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3340,378,0 chrIX 86586 . T G 3732.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.70;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3732,441,0 chrIX 86715 . G T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=20.7096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3961,462,0 chrIX 86751 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.91;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3944,450,0 chrIX 86925 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=211;Dels=0.00;FS=6.040;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.273;QD=21.86;ReadPosRankSum=2.948;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4613,540,0 chrIX 87135 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.1100;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.30;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3494,402,0 chrIX 87159 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.85;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2991,354,0 chrIX 87283 . C T 3928.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.5977;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.95;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3928,435,0 chrIX 87642 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.13;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3584,420,0 chrIX 87711 . C T 2944 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.24;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2977,336,0 chrIX 87715 . G T 2840 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.29;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2873,321,0 chrIX 87717 . C A 2756 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.88;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2789,318,0 chrIX 87789 . T C 1996 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.96;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2029,240,0 chrIX 88444 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.45;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3325,372,0 chrIX 88448 . T C 3041 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.62;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3074,354,0 chrIX 88786 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.12;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2186,243,0 chrIX 88821 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.85;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2087,240,0 chrIX 89046 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.26;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2726,312,0 chrIX 89179 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=144;Dels=0.00;FS=9.308;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.553;QD=22.84;ReadPosRankSum=2.937;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3289,378,0 chrIX 89302 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.401;QD=21.49;ReadPosRankSum=1.707;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2955,342,0 chrIX 89332 . T G 3072 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.82;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3105,372,0 chrIX 89380 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.73;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3204,369,0 chrIX 89461 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.81;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2509,297,0 chrIX 89488 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.57;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2707,300,0 chrIX 89500 . T C 2766 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.76;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2799,321,0 chrIX 89775 . A G 2217 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.17;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2250,255,0 chrIX 90521 . C G 3125 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3158,363,0 chrIX 90599 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2928,330,0 chrIX 90720 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2542,291,0 chrIX 91277 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.5387;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.72;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3613,399,0 chrIX 91316 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3886;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.54;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4058,459,0 chrIX 91343 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.135;QD=20.54;ReadPosRankSum=1.670;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3491,405,0 chrIX 91352 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=6.7431;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.26;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3429,402,0 chrIX 91709 . A T 4725.01 SnpCluster AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.91;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4725,540,0 chrIX 91712 . T C 4530.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=229;Dels=0.00;FS=12.703;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.423;QD=19.78;ReadPosRankSum=3.422;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:4,225:229:99:4530,528,0 chrIX 91718 . A G 4535.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-0.179;QD=19.46;ReadPosRankSum=1.717;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:4535,525,0 chrIX 91970 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.661;QD=21.21;ReadPosRankSum=1.643;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,193:199:99:4221,492,0 chrIX 92242 . C A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.56;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4358,486,0 chrIX 92420 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.485;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.378;QD=21.84;ReadPosRankSum=1.692;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3822,441,0 chrIX 92732 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.80;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2251,264,0 chrIX 92829 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.3849;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.20;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1853,222,0 chrIX 92944 . A G 1175 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.976;DP=67;Dels=0.00;FS=2.997;HaplotypeScore=3.4211;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;MQRankSum=-1.603;QD=17.54;ReadPosRankSum=2.155;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1208,141,0 chrIX 92947 . G A 1196 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=18.98;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1229,138,0 chrIX 92948 . A T 1152 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=3.040;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;MQRankSum=-1.135;QD=18.58;ReadPosRankSum=2.371;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1185,138,0 chrIX 92966 . C T 867 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=13.98;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:900,105,0 chrIX 92997 . G A 585 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=10.64;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:618,72,0 chrIX 92998 . A C 590 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=10.93;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:72:623,72,0 chrIX 92999 . A C 561 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=10.20;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:72:594,72,0 chrIX 93013 . G T 715 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=0;QD=11.72;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:84:748,84,0 chrIX 93053 . C A 1227 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=14.78;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1260,141,0 chrIX 93058 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=15.04;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1296,147,0 chrIX 93207 . C A 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=1.709;QD=17.70;ReadPosRankSum=1.619;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2741,321,0 chrIX 93215 . A G 2468 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=150;Dels=0.00;FS=23.176;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=0.466;QD=16.45;ReadPosRankSum=2.926;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:3,146:150:99:2501,297,0 chrIX 93219 . A G 2250 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=15.52;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2283,276,0 chrIX 93224 . T C 2159 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5395;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;MQRankSum=-0.967;QD=14.20;ReadPosRankSum=2.808;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:3,149:152:99:2192,264,0 chrIX 93363 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.6464;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.70;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3718,438,0 chrIX 93376 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.00;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:3744,432,0 chrIX 93546 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6492;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.65;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3544,414,0 chrIX 93577 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.734;QD=19.04;ReadPosRankSum=1.676;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3503,414,0 chrIX 93723 . C T 4466.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.9272;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.90;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4466,504,0 chrIX 93804 . C T 5521.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=13.3585;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.17;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5521,647,0 chrIX 93903 . G A 5419.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.2808;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.94;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,242:247:99:5419,624,0 chrIX 94143 . G A 4569.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4569,516,0 chrIX 94263 . C T 5086.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.1636;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.71;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5086,588,0 chrIX 94456 . C A 6621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.482;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=17.8399;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.970;QD=22.52;ReadPosRankSum=1.601;SB=-3.531e+03 GT:AD:DP:GQ:PL 1/1:1,290:294:99:6621,736,0 chrIX 94563 . T C 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.1140;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-0.820;QD=22.16;ReadPosRankSum=2.459;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4343,507,0 chrIX 94593 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.566;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=2.7609;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-0.083;QD=19.06;ReadPosRankSum=0.461;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:4403,513,0 chrIX 94596 . T C 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.3382;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=0.538;QD=18.63;ReadPosRankSum=0.224;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4323,504,0 chrIX 94804 . G T 2634 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=21.07;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2667,306,0 chrIX 94805 . A T 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-0.014;QD=21.21;ReadPosRankSum=1.704;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2684,306,0 chrIX 94886 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=4.851;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=1.134;QD=19.65;ReadPosRankSum=1.669;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2194,255,0 chrIX 94907 . A G 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=4.361;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.737;QD=19.07;ReadPosRankSum=1.629;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1959,231,0 chrIX 94908 . T A 1985 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.65;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2018,228,0 chrIX 94919 . A C 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.874;QD=19.51;ReadPosRankSum=1.699;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2082,246,0 chrIX 95013 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.33;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1663,189,0 chrIX 95341 . C G 3277.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7018;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.23;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3277,392,0 chrIX 95580 . A T 6390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=315;Dels=0.00;FS=3.911;HaplotypeScore=11.6475;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.819;QD=20.29;ReadPosRankSum=1.699;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:1,314:315:99:6390,729,0 chrIX 95590 . C T 6518.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=11.6305;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.31;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:0,319:321:99:6518,729,0 chrIX 96372 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.19;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3934,447,0 chrIX 96388 . C A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.6395;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.85;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4004,453,0 chrIX 96801 . T G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=20.08;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3394,381,0 chrIX 96831 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=291.7430;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=17.81;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3150,372,0 chrIX 96838 . T C,G 391.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.707;DP=198;Dels=0.00;FS=0.953;HaplotypeScore=147.1634;MLEAC=1,1;MLEAF=0.500,0.500;MQ=32.62;MQ0=0;MQRankSum=-1.029;QD=1.97;ReadPosRankSum=-9.859;SB=8.99 GT:AD:DP:GQ:PL 1/2:149,28,19:198:99:451,264,240,186,0,150 chrIX 96842 . G A 352 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=147.5687;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=1.93;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:45:385,45,0 chrIX 96860 . G A 2814 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=16.36;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2847,318,0 chrIX 96864 . C A 2551 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=15.09;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2584,300,0 chrIX 96868 . C T 2505 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=14.56;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2538,300,0 chrIX 96875 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=13.65;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2354,264,0 chrIX 96885 . G C 1950 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=12.50;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:1983,234,0 chrIX 96924 . A G 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=129;Dels=0.00;FS=3.006;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;MQRankSum=0.509;QD=15.75;ReadPosRankSum=2.411;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2065,246,0 chrIX 97283 . A G 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.102;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=10.3947;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.372;QD=18.67;ReadPosRankSum=-0.742;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1545,162,0 chrIX 97705 . A G 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=211;Dels=0.00;FS=5.518;HaplotypeScore=17.7337;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.491;QD=21.42;ReadPosRankSum=2.929;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:4519,522,0 chrIX 97868 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.87;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4163,477,0 chrIX 98039 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6099;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.62;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3481,390,0 chrIX 98129 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.07;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3399,375,0 chrIX 98144 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=18.66;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2906,336,0 chrIX 98171 . C G 2318 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.51;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2351,276,0 chrIX 98294 . C A 1751 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.03;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1784,201,0 chrIX 98431 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.62;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1353,153,0 chrIX 98435 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.77;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1321,153,0 chrIX 98672 . A G 2514 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.06;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2547,291,0 chrIX 98932 . A G 2357 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2390,279,0 chrIX 99043 . T C 2236 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1744;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.59;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2269,264,0 chrIX 99647 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.489;QD=19.23;ReadPosRankSum=1.679;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2572,297,0 chrIX 99653 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.46;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2485,285,0 chrIX 99715 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=16.51;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1965,225,0 chrIX 99731 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=14.72;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:90:99:1358,159,0 chrIX 99734 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=14.98;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1441,171,0 chrIX 99772 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=13.89;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1422,159,0 chrIX 99794 . T C 1518 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=12.24;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1551,180,0 chrIX 99807 . A G 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=0.095;QD=12.98;ReadPosRankSum=2.408;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1552,180,0 chrIX 99809 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=12.95;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1535,180,0 chrIX 99846 . T A 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=3.388;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=-0.462;QD=15.94;ReadPosRankSum=1.703;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1946,222,0 chrIX 100355 . A G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.609;QD=23.39;ReadPosRankSum=1.701;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2653,303,0 chrIX 100450 . T C 2390 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.93;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2423,279,0 chrIX 102247 . G A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.42;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3856,444,0 chrIX 102495 . A C 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=3.040;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;MQRankSum=-1.829;QD=13.85;ReadPosRankSum=2.386;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1626,189,0 chrIX 102496 . T A 1731 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=15.32;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1764,198,0 chrIX 102506 . G A 1307 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=12.10;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,103:108:99:1340,156,0 chrIX 102597 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.78;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2090,240,0 chrIX 102706 . A C 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=1.382;QD=20.99;ReadPosRankSum=1.697;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2132,249,0 chrIX 102742 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.25;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2349,273,0 chrIX 103011 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.4574;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.14;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2540,285,0 chrIX 103132 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.54;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3471,399,0 chrIX 103157 . T C 2950 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.92;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2983,345,0 chrIX 103227 . A G 3133 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3160;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.06;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3166,366,0 chrIX 103838 . A T 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=119;Dels=0.00;FS=2.640;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.631;QD=21.78;ReadPosRankSum=2.388;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2625,294,0 chrIX 103927 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=4.195;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.391;QD=22.35;ReadPosRankSum=1.665;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3487,402,0 chrIX 104128 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=5.9737;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.99;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2298,258,0 chrIX 104545 . A G 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=84;Dels=0.00;FS=2.616;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.289;QD=21.25;ReadPosRankSum=2.917;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1818,210,0 chrIX 104638 . T C 2146 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.8847;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.04;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2179,252,0 chrIX 104826 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.62;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3017,348,0 chrIX 104901 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.73;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2541,285,0 chrIX 104911 . G C 2223 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.50;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2256,264,0 chrIX 105090 . T C 2771 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.82;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2804,324,0 chrIX 105213 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.867;QD=21.41;ReadPosRankSum=2.392;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2816,324,0 chrIX 105277 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.43;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1544,186,0 chrIX 105335 . G A 355 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=12.68;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:45:388,45,0 chrIX 105338 . A G 274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.734;QD=11.42;ReadPosRankSum=1.589;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:36:307,36,0 chrIX 105959 . A G 567 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.72;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:72:600,72,0 chrIX 105961 . G A 512 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.52;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:66:545,66,0 chrIX 106806 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.131;QD=18.29;ReadPosRankSum=2.753;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:3785,444,0 chrIX 106983 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7273;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.59;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3302,378,0 chrIX 107044 . A G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=7.187;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.234;QD=21.00;ReadPosRankSum=2.401;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2154,252,0 chrIX 107538 . G A 5546.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.9980;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.01;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5546,648,0 chrIX 107705 . T C 4736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=219;Dels=0.00;FS=3.412;HaplotypeScore=19.9979;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.523;QD=21.63;ReadPosRankSum=1.716;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:1,214:219:99:4736,549,0 chrIX 107802 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.07;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4194,471,0 chrIX 107820 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0973;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.80;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3968,435,0 chrIX 108023 . T A 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=5.725;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.073;QD=21.14;ReadPosRankSum=1.683;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3035,348,0 chrIX 108035 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.86;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3094,342,0 chrIX 108260 . T C 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=176;Dels=0.00;FS=5.046;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.622;QD=24.02;ReadPosRankSum=3.390;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:4228,489,0 chrIX 108375 . C T 4294.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.86;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4294,489,0 chrIX 109134 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.71;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3225,363,0 chrIX 110073 . A G 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=2.860;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.009;QD=21.87;ReadPosRankSum=2.413;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3008,351,0 chrIX 110559 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.64;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3170,375,0 chrIX 110880 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.06;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3459,390,0 chrIX 111173 . G A 2072 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.2983;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.58;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2105,240,0 chrIX 111569 . G A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.79;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4289,483,0 chrIX 111631 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.12;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3329,369,0 chrIX 111711 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=16.82;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2741,324,0 chrIX 111771 . C A 2899 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.2052;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.12;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2932,339,0 chrIX 111785 . T C 2573 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.25;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,136:141:99:2606,297,0 chrIX 111816 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=19.11;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2345,270,0 chrIX 111894 . A T 2300 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.50;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2333,267,0 chrIX 112032 . A G 2172 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.11;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2205,255,0 chrIX 112043 . T A 2380 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.06;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2413,267,0 chrIX 112368 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=168;Dels=0.00;FS=5.584;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-2.204;QD=20.28;ReadPosRankSum=2.874;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3407,402,0 chrIX 112374 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=155;Dels=0.00;FS=5.718;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.201;QD=19.35;ReadPosRankSum=2.916;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3032,360,0 chrIX 112524 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.08;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2499,288,0 chrIX 112711 . T C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=136;Dels=0.00;FS=5.584;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.333;QD=21.83;ReadPosRankSum=2.948;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3002,348,0 chrIX 112854 . T A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.43;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4329,510,0 chrIX 113159 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.5792;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.70;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3035,348,0 chrIX 113517 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.34;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3888,432,0 chrIX 113518 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.90;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3811,429,0 chrIX 113579 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.57;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3333,378,0 chrIX 113679 . G A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.81;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3402,384,0 chrIX 113799 . C A 2720 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8567;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.65;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2753,309,0 chrIX 113838 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.33;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3182,369,0 chrIX 114027 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.56;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2994,354,0 chrIX 114087 . T C 2779 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.14;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2812,330,0 chrIX 114105 . G C 2695 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.53;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2728,315,0 chrIX 114136 . G T 2312 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.11;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2345,258,0 chrIX 114141 . A C 2096 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.90;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2129,252,0 chrIX 114372 . T C 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.065;DP=96;Dels=0.00;FS=6.831;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.090;QD=19.53;ReadPosRankSum=2.373;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1908,222,0 chrIX 114549 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.65;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2343,270,0 chrIX 114791 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=117;Dels=0.00;FS=3.022;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-0.473;QD=22.50;ReadPosRankSum=2.408;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2666,306,0 chrIX 114808 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.59;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2494,288,0 chrIX 114831 . T C 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.493;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.608;QD=17.65;ReadPosRankSum=1.702;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2045,246,0 chrIX 114843 . A G 2014 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.51;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2047,237,0 chrIX 115136 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.77;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2720,312,0 chrIX 115710 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.06;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2198,249,0 chrIX 115895 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.698;QD=22.84;ReadPosRankSum=1.698;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2431,276,0 chrIX 115941 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.84;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2888,327,0 chrIX 116245 . G T 2283 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.60;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2316,255,0 chrIX 116252 . A T 2144 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.81;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2177,246,0 chrIX 116385 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.88;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2549,294,0 chrIX 116593 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.79;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3735,423,0 chrIX 116694 . C A 3215 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.1294;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.02;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3248,366,0 chrIX 116710 . A T 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.502;QD=21.20;ReadPosRankSum=1.630;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3582,414,0 chrIX 116742 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.224;QD=21.75;ReadPosRankSum=1.691;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3697,423,0 chrIX 116908 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.20;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3434,384,0 chrIX 116995 . C A 2166 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.80;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2199,243,0 chrIX 117012 . T A 2027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.222;QD=21.34;ReadPosRankSum=1.623;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2060,231,0 chrIX 117122 . C G 2317 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.26;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2350,273,0 chrIX 117336 . A T 2555 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.29;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2588,297,0 chrIX 117411 . T C 2220 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.81;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2253,264,0 chrIX 117413 . T G 1971 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=16.99;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2004,237,0 chrIX 117576 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.89;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3010,336,0 chrIX 117695 . T C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.9765;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.650;QD=20.18;ReadPosRankSum=0.553;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2959,342,0 chrIX 117717 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.12;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2758,306,0 chrIX 117795 . C A 2898 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.47;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2931,330,0 chrIX 117809 . T G 2895 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.54;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2928,333,0 chrIX 118304 . G A 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.6007;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-1.421;QD=18.62;ReadPosRankSum=-0.550;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3142,354,0 chrIX 118307 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.611;DP=170;Dels=0.00;FS=5.526;HaplotypeScore=4.3894;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.611;QD=17.94;ReadPosRankSum=2.886;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3083,360,0 chrIX 118421 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.33;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3391,387,0 chrIX 118671 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=150;Dels=0.00;FS=3.808;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.569;QD=22.18;ReadPosRankSum=1.686;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3327,384,0 chrIX 118750 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3355,384,0 chrIX 118855 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=181;Dels=0.00;FS=9.079;HaplotypeScore=12.9109;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.449;QD=21.18;ReadPosRankSum=3.411;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:3834,453,0 chrIX 119687 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2270,258,0 chrIX 120214 . T A 2811 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.04;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2844,327,0 chrIX 121332 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.31;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3659,429,0 chrIX 121460 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.563;QD=22.09;ReadPosRankSum=1.711;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3623,429,0 chrIX 121534 . A G 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=152;Dels=0.00;FS=2.716;HaplotypeScore=6.6524;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.851;QD=20.80;ReadPosRankSum=2.385;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3195,375,0 chrIX 121603 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5983;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.52;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2229,264,0 chrIX 121652 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.04;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2890,339,0 chrIX 121727 . T C 1720 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6805;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.92;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,92:96:99:1753,204,0 chrIX 121741 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=18.87;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1599,180,0 chrIX 122282 . G T 2063 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=18.26;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2096,240,0 chrIX 122284 . C G 2020 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.36;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2053,237,0 chrIX 122375 . G C 2672 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.72;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2705,312,0 chrIX 122588 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.93;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2326,261,0 chrIX 122620 . A T 2103 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.22;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2136,249,0 chrIX 122779 . A T 3021 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.89;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3054,342,0 chrIX 122940 . A T 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=3.374;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.328;QD=21.89;ReadPosRankSum=1.707;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3032,351,0 chrIX 122985 . C T 3193 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6996;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.72;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3226,366,0 chrIX 123250 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.27;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2547,294,0 chrIX 123263 . A G 2269 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.56;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2302,264,0 chrIX 123753 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.06;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3662,420,0 chrIX 124599 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=4.168;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.609;QD=21.76;ReadPosRankSum=1.708;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:3166,369,0 chrIX 124830 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.719;DP=203;Dels=0.00;FS=11.953;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.476;QD=21.15;ReadPosRankSum=3.812;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:5,198:203:99:4293,498,0 chrIX 125455 . C G 3281.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.31;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,148:154:99:3281,375,0 chrIX 125836 . A G 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.056;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=54.5028;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.655;QD=20.55;ReadPosRankSum=2.375;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1389,136,0 chrIX 125925 . T C 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=1.137;QD=20.31;ReadPosRankSum=1.570;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1333,156,0 chrIX 126032 . T C 1354 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=15.74;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1387,162,0 chrIX 126041 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=15.59;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1389,153,0 chrIX 126152 . A T 1843 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=16.17;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1876,222,0 chrIX 126154 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=183.6366;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=16.71;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1921,213,0 chrIX 126178 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=4.401;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;MQRankSum=0.577;QD=12.53;ReadPosRankSum=1.681;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:1724,204,0 chrIX 126191 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=14.03;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2039,228,0 chrIX 126375 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=21.84;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3822,450,0 chrIX 126566 . T C 5176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.6953;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.786;QD=22.70;ReadPosRankSum=1.717;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5176,600,0 chrIX 126608 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.09;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4706,537,0 chrIX 127421 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.56;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2901,324,0 chrIX 127636 . T C 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.398;QD=19.90;ReadPosRankSum=1.675;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2461,285,0 chrIX 127637 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.23;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2481,285,0 chrIX 127749 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.92;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3326,387,0 chrIX 127774 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.39;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3385,390,0 chrIX 128561 . T C 4994.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=14.9106;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=19.13;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:4994,582,0 chrIX 128663 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=150.6885;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=13.14;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1676,198,0 chrIX 128694 . A T 91.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.474;DP=124;Dels=0.00;FS=0.683;HaplotypeScore=18.1972;MLEAC=1;MLEAF=0.500;MQ=31.92;MQ0=0;MQRankSum=-0.660;QD=0.74;ReadPosRankSum=8.825;SB=-4.415e+02 GT:AD:DP:GQ:PL 0/1:73,51:124:6:121,0,6 chrIX 128726 . C T 116.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DP=179;Dels=0.00;FS=1.507;HaplotypeScore=263.4630;MLEAC=1;MLEAF=0.500;MQ=45.95;MQ0=0;MQRankSum=3.179;QD=0.65;ReadPosRankSum=-7.739;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:145,34:179:99:146,0,904 chrIX 128729 . C T 335 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.775;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=263.4630;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=1.379;QD=1.80;ReadPosRankSum=-8.551;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:133,53:186:42:368,42,0 chrIX 128732 . C T 385 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=264.2517;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=1.94;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:48:418,48,0 chrIX 129806 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.11;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2973,348,0 chrIX 129878 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.21;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2918,339,0 chrIX 129907 . C A 2775 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.51;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2808,324,0 chrIX 130004 . T A 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.804;QD=22.12;ReadPosRankSum=1.577;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2510,282,0 chrIX 130048 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.95;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1871,216,0 chrIX 130049 . G T 1749 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.03;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1782,210,0 chrIX 130270 . T C 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=109;Dels=0.00;FS=6.052;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.435;QD=21.20;ReadPosRankSum=2.917;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2344,270,0 chrIX 130336 . C T 2263 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7272;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.19;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2296,267,0 chrIX 130537 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.47;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3505,402,0 chrIX 130702 . T C 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.656;QD=21.64;ReadPosRankSum=1.694;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3917,459,0 chrIX 130771 . A T 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.8308;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.692;QD=22.23;ReadPosRankSum=1.671;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3802,441,0 chrIX 130991 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8707;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.660;QD=22.00;ReadPosRankSum=1.670;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3696,429,0 chrIX 131206 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.23;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3628,408,0 chrIX 131207 . G T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.29;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3639,408,0 chrIX 131341 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=2.942;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.038;QD=21.22;ReadPosRankSum=2.328;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3438,408,0 chrIX 131883 . C A 2234 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.59;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2267,267,0 chrIX 131891 . T G 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.703;QD=18.51;ReadPosRankSum=1.703;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2217,267,0 chrIX 132148 . A T 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.252;DP=134;Dels=0.00;FS=12.020;HaplotypeScore=14.1502;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.563;QD=19.97;ReadPosRankSum=3.780;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:5,129:134:99:2709,309,0 chrIX 132269 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.45;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3251,375,0 chrIX 132429 . T G 3870.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1505;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.50;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3870,461,0 chrIX 132543 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=179;Dels=0.00;FS=2.806;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.700;QD=21.52;ReadPosRankSum=2.366;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3852,456,0 chrIX 132615 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.83;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4165,489,0 chrIX 132633 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.92;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3924,462,0 chrIX 132669 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.0176;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.90;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3960,453,0 chrIX 132708 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.64;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3594,423,0 chrIX 132756 . C T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.3726;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.37;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3409,399,0 chrIX 133353 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=23.16;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3728,414,0 chrIX 133479 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=152;Dels=0.00;FS=7.691;HaplotypeScore=10.2031;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.380;QD=23.70;ReadPosRankSum=2.385;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3602,411,0 chrIX 133539 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3234,384,0 chrIX 133668 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=8.8090;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.55;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3427,393,0 chrIX 133869 . T C 2366 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.57;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2399,276,0 chrIX 133870 . T C 2281 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.50;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2314,270,0 chrIX 135075 . A G 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.6388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.768;QD=21.39;ReadPosRankSum=1.712;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3765,441,0 chrIX 135146 . T C 3136 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.33;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3169,363,0 chrIX 135361 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.090;QD=22.04;ReadPosRankSum=1.704;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2766,327,0 chrIX 135647 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.99;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,143:149:99:3161,372,0 chrIX 135991 . G C 2443 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.3154;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.88;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2476,285,0 chrIX 136028 . C T 2270 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.57;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2303,255,0 chrIX 136044 . T A 2184 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=18.83;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2217,249,0 chrIX 136075 . A G 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=98;Dels=0.00;FS=2.527;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.000;QD=16.77;ReadPosRankSum=2.887;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1676,198,0 chrIX 136083 . A G 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-1.694;QD=18.24;ReadPosRankSum=1.542;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1693,195,0 chrIX 136100 . T C 1700 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.89;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1733,201,0 chrIX 136134 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.31;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1354,150,0 chrIX 136172 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.25;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1301,150,0 chrIX 136368 . C T 658 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.56;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:691,81,0 chrIX 136619 . A G 1041 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1074,132,0 chrIX 136762 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.02;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2611,294,0 chrIX 137160 . A T 341 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.95;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:45:374,45,0 chrIX 137266 . G T 1232 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.6040;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.69;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1265,144,0 chrIX 137856 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.83;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1679,189,0 chrIX 138041 . G A 1027 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=8.9917;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.02;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1060,120,0 chrIX 138135 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.76;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1713,189,0 chrIX 138253 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=23.20;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2701,306,0 chrIX 138293 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=19.77;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2346,273,0 chrIX 138305 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=2.581;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=-0.650;QD=17.90;ReadPosRankSum=2.330;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2235,264,0 chrIX 138334 . C G 1910 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.53;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:1943,231,0 chrIX 138346 . T C 2048 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=15.63;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2081,243,0 chrIX 138455 . A C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-1.362;QD=18.32;ReadPosRankSum=1.706;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2470,288,0 chrIX 138486 . T C 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=4.378;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;MQRankSum=-1.151;QD=15.24;ReadPosRankSum=1.403;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2136,249,0 chrIX 138490 . G T 1983 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=14.37;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2016,243,0 chrIX 138686 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.66;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2589,306,0 chrIX 138710 . T C 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-1.619;QD=18.52;ReadPosRankSum=1.590;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2293,273,0 chrIX 138723 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=0.465;QD=17.56;ReadPosRankSum=1.591;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2210,258,0 chrIX 138762 . C A 2336 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.69;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2369,279,0 chrIX 139068 . C A 2596 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.31;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2629,303,0 chrIX 139106 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=11.3198;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=15.62;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2672,303,0 chrIX 139222 . T A 2312 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.61;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2345,261,0 chrIX 139233 . G C 2048 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.08;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2081,240,0 chrIX 139273 . G A 937 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0685;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=11.71;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:970,114,0 chrIX 139370 . A G 2229 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.89;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2262,267,0 chrIX 139395 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.42;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2791,315,0 chrIX 139542 . T A 2220 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.76;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2253,258,0 chrIX 139685 . T C 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.547;QD=20.64;ReadPosRankSum=1.611;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2386,276,0 chrIX 139695 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.08;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2302,270,0 chrIX 139714 . T G 2097 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.78;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2130,240,0 chrIX 139937 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=203;Dels=0.00;FS=4.815;HaplotypeScore=13.3553;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.143;QD=22.16;ReadPosRankSum=1.715;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4499,513,0 chrIX 140602 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1320,150,0 chrIX 140656 . G T 2499 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=25.76;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2532,285,0 chrIX 140742 . T C 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.260;QD=23.46;ReadPosRankSum=2.258;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2144,249,0 chrIX 140853 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.99;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3320,372,0 chrIX 140960 . A T 2759 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.55;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2792,315,0 chrIX 141013 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.73;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2769,324,0 chrIX 141022 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=134;Dels=0.00;FS=7.469;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.376;QD=20.50;ReadPosRankSum=2.376;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2780,318,0 chrIX 141141 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.24;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3058,345,0 chrIX 141212 . T C 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=3.704;HaplotypeScore=8.2393;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.540;QD=22.20;ReadPosRankSum=1.619;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2764,330,0 chrIX 141321 . T G 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=140;Dels=0.00;FS=3.106;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.443;QD=18.98;ReadPosRankSum=1.707;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:2690,315,0 chrIX 141332 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.8278;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.32;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2561,294,0 chrIX 141469 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.14;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2732,306,0 chrIX 141480 . T G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.142;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.388;QD=17.95;ReadPosRankSum=1.706;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2456,291,0 chrIX 141514 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9633;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.92;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2398,264,0 chrIX 141703 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.56;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1904,222,0 chrIX 141727 . T C 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.310;QD=19.29;ReadPosRankSum=1.690;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1615,192,0 chrIX 141911 . A G 2473 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.28;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2506,294,0 chrIX 141990 . A G 2276 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.07;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2309,270,0 chrIX 142169 . G A 2446 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.08;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2479,276,0 chrIX 142201 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.69;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2642,315,0 chrIX 142390 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.12;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2298,267,0 chrIX 142456 . A T 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=6.490;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.605;QD=19.98;ReadPosRankSum=2.410;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2510,285,0 chrIX 142470 . A G 2215 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=19.09;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2248,261,0 chrIX 142478 . C A 2105 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=18.63;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2138,246,0 chrIX 142488 . C G 1827 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=16.92;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1860,216,0 chrIX 142542 . T C 2244 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=18.39;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2277,267,0 chrIX 142556 . G T 2231 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=112.1063;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=18.29;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2264,264,0 chrIX 142618 . G T 2466 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=19.42;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2499,285,0 chrIX 142621 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=19.56;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2459,276,0 chrIX 142688 . A G 2545 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=20.04;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2578,309,0 chrIX 142823 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=19.94;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2246,261,0 chrIX 142835 . C T 1951 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=17.27;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1984,234,0 chrIX 142863 . T C 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;MQRankSum=0.859;QD=14.32;ReadPosRankSum=1.703;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:1752,201,0 chrIX 142872 . A T 1812 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;QD=14.61;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1845,201,0 chrIX 142884 . C A 1969 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;QD=14.69;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2002,222,0 chrIX 142896 . T G 1900 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=13.67;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1933,228,0 chrIX 142906 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=14.03;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2025,225,0 chrIX 143038 . T C 2497 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.71;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2530,297,0 chrIX 143092 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.1902;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=23.10;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3511,411,0 chrIX 143302 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.39;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3439,384,0 chrIX 143414 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.789;QD=22.56;ReadPosRankSum=1.691;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3812,441,0 chrIX 143458 . C A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.7173;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.41;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3361,387,0 chrIX 144130 . T C 36.12 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=39.4490;MLEAC=1;MLEAF=0.500;MQ=45.98;MQ0=0;MQRankSum=0.583;QD=2.78;ReadPosRankSum=-2.843;SB=-1.711e+01 GT:AD:DP:GQ:PL 0/1:6,6:13:13:66,0,13 chrIX 144282 . A T 1510 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7799;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.88;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1543,177,0 chrIX 144387 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.29;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2715,321,0 chrIX 144528 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.659;DP=176;Dels=0.00;FS=19.343;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.775;QD=22.61;ReadPosRankSum=3.748;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:5,170:176:99:3980,456,0 chrIX 144792 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.69;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2415,285,0 chrIX 144905 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.53;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2127,240,0 chrIX 144940 . T C 2345 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.55;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2378,276,0 chrIX 145412 . C T 4721.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.59;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4721,543,0 chrIX 145517 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.617;QD=22.45;ReadPosRankSum=1.663;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3367,387,0 chrIX 145679 . C A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.99;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3343,381,0 chrIX 145805 . T A 2894 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.82;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2927,345,0 chrIX 145807 . T G 2940 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.00;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2973,339,0 chrIX 145867 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=18.97;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2480,279,0 chrIX 146023 . G T 2523 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.38;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2556,285,0 chrIX 146041 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.04;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2318,270,0 chrIX 146193 . T C 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6874;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.655;QD=20.88;ReadPosRankSum=1.706;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2894,342,0 chrIX 146407 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.53;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3358,387,0 chrIX 146460 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.70;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3353,390,0 chrIX 146627 . T C 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=132;Dels=0.00;FS=6.072;HaplotypeScore=7.9206;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.283;QD=21.48;ReadPosRankSum=2.947;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2868,336,0 chrIX 146901 . A G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=3.044;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;MQRankSum=-1.816;QD=16.47;ReadPosRankSum=2.412;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2207,258,0 chrIX 146913 . T C 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.523;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;MQRankSum=-0.261;QD=16.07;ReadPosRankSum=0.850;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1752,204,0 chrIX 146919 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=14.83;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1501,174,0 chrIX 146928 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=14.26;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1188,135,0 chrIX 146932 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=14.51;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1179,132,0 chrIX 146979 . A G 178.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DP=32;Dels=0.00;FS=5.300;HaplotypeScore=2.6912;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;MQRankSum=2.194;QD=5.58;ReadPosRankSum=-1.282;SB=-2.351e+02 GT:AD:DP:GQ:PL 1/1:4,28:32:4:209,4,0 chrIX 146985 . T G 273.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=40;Dels=0.00;FS=4.260;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;MQRankSum=-0.693;QD=6.83;ReadPosRankSum=-1.733;SB=-3.043e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:14:306,14,0 chrIX 146991 . T C 386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=55;Dels=0.00;FS=1.636;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=0.341;QD=7.02;ReadPosRankSum=2.614;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:7,48:55:3:416,3,0 chrIX 147005 . G A 84.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=1;MLEAF=0.500;MQ=46.99;MQ0=0;MQRankSum=-4.997;QD=0.73;ReadPosRankSum=-4.663;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:87,26:115:99:114,0,1103 chrIX 147006 . C T 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.919;DP=115;Dels=0.00;FS=3.705;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=1.581;QD=13.45;ReadPosRankSum=-1.732;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1580,156,0 chrIX 147018 . A C 191.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.314;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=1;MLEAF=0.500;MQ=46.29;MQ0=0;MQRankSum=-7.023;QD=1.20;ReadPosRankSum=-6.045;SB=-3.490e+02 GT:AD:DP:GQ:PL 0/1:104,55:159:99:221,0,1481 chrIX 147036 . A G 399.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;DP=215;Dels=0.00;FS=0.519;HaplotypeScore=8.3255;MLEAC=1;MLEAF=0.500;MQ=48.21;MQ0=0;MQRankSum=-6.162;QD=1.86;ReadPosRankSum=-2.163;SB=-6.060e+02 GT:AD:DP:GQ:PL 0/1:132,83:215:99:429,0,2129 chrIX 147051 . G T 776.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=8.0447;MLEAC=1;MLEAF=0.500;MQ=48.87;MQ0=0;MQRankSum=-7.728;QD=2.87;ReadPosRankSum=2.055;SB=-9.510e+02 GT:AD:DP:GQ:PL 0/1:154,116:270:99:806,0,2405 chrIX 147057 . A G 1033.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;DP=304;Dels=0.00;FS=0.422;HaplotypeScore=14.2013;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=0;MQRankSum=-7.148;QD=3.40;ReadPosRankSum=2.862;SB=-1.161e+03 GT:AD:DP:GQ:PL 0/1:166,134:304:99:1063,0,2556 chrIX 147092 . A G 2179.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.808;DP=289;Dels=0.00;FS=0.435;HaplotypeScore=16.5125;MLEAC=1;MLEAF=0.500;MQ=49.75;MQ0=0;MQRankSum=-3.607;QD=7.54;ReadPosRankSum=-0.854;SB=-1.642e+03 GT:AD:DP:GQ:PL 0/1:121,164:289:99:2209,0,1878 chrIX 147119 . C T 515.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.446;DP=260;Dels=0.00;FS=6.646;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=50.11;MQ0=0;MQRankSum=1.277;QD=1.98;ReadPosRankSum=-0.590;SB=-2.200e+02 GT:AD:DP:GQ:PL 0/1:182,76:260:99:545,0,2989 chrIX 147145 . T G 4703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=20.6357;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-1.419;QD=20.10;ReadPosRankSum=1.939;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:2,229:234:99:4703,554,0 chrIX 147411 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=150;Dels=0.00;FS=2.566;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.223;QD=20.67;ReadPosRankSum=2.872;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3134,363,0 chrIX 147544 . T C 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=126;Dels=0.00;FS=2.558;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.792;QD=20.42;ReadPosRankSum=2.816;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2606,306,0 chrIX 147738 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9823;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.85;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3824,444,0 chrIX 148268 . A T 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.488;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.830;QD=20.37;ReadPosRankSum=1.696;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1989,222,0 chrIX 148277 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.69;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1715,204,0 chrIX 148452 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.85;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2370,261,0 chrIX 148554 . A C 2345 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.90;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2378,282,0 chrIX 148671 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.82;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2771,321,0 chrIX 148834 . A C 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.816;QD=21.84;ReadPosRankSum=1.653;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1933,225,0 chrIX 148892 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=19.12;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1429,165,0 chrIX 148915 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=20.89;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1600,177,0 chrIX 148925 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=20.38;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1643,189,0 chrIX 149011 . T C 1050 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=57.8900;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=16.41;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1083,129,0 chrIX 149112 . T C 505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=-0.866;QD=10.52;ReadPosRankSum=1.660;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:63:538,63,0 chrIX 149122 . T C 608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.518;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=2.6871;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-2.383;QD=10.31;ReadPosRankSum=3.657;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:5,53:58:75:641,75,0 chrIX 149148 . G C 887 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=10.95;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:920,108,0 chrIX 149149 . C T 879 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=10.85;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:912,108,0 chrIX 149160 . G A 1006 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=11.05;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1039,117,0 chrIX 149380 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.648;QD=22.36;ReadPosRankSum=1.647;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3689,432,0 chrIX 149501 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.40;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3808,435,0 chrIX 149536 . G T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.68;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3534,399,0 chrIX 149623 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.042;QD=21.07;ReadPosRankSum=1.711;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3497,414,0 chrIX 149785 . T A 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.163;QD=21.64;ReadPosRankSum=1.710;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3440,399,0 chrIX 149978 . C G 3138 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3171,369,0 chrIX 150261 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3634,429,0 chrIX 150521 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.8961;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.485;QD=20.86;ReadPosRankSum=1.675;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3839,450,0 chrIX 150599 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.81;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3829,447,0 chrIX 150780 . C T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.40;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5043,596,0 chrIX 150789 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.188;DP=263;Dels=0.00;FS=29.359;HaplotypeScore=14.6203;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.121;QD=17.58;ReadPosRankSum=4.430;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:7,256:263:99:4623,531,0 chrIX 151377 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.53;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2574,297,0 chrIX 151394 . T C 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=2.706;HaplotypeScore=5.2254;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.215;QD=21.03;ReadPosRankSum=2.409;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2557,297,0 chrIX 151503 . A C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=159.3746;MLEAC=1;MLEAF=0.500;MQ=53.80;MQ0=0;MQRankSum=-0.614;QD=0.18;ReadPosRankSum=2.020;SB=-1.537e+03 GT:AD:DP:GQ:PL 0/1:2,164:169:34:60,0,34 chrIX 151569 . G C 2782 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.9986;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.87;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2815,330,0 chrIX 151727 . G A 2643 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=17.86;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2676,312,0 chrIX 151731 . A G 2391 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=17.08;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2424,282,0 chrIX 151733 . C T 2301 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=16.20;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2334,276,0 chrIX 151767 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=13.16;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2151,240,0 chrIX 151775 . T C 1994 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=12.95;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2027,234,0 chrIX 151788 . T G 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=162;Dels=0.00;FS=5.265;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=-1.689;QD=13.44;ReadPosRankSum=3.405;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:2211,258,0 chrIX 151869 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.93;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4667,528,0 chrIX 151882 . T C 4376.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.35;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4376,516,0 chrIX 151917 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=18.31;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3238,369,0 chrIX 151918 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=18.47;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3246,363,0 chrIX 152184 . T A 2969 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.16;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3002,339,0 chrIX 152243 . G C 2937 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2970,351,0 chrIX 152419 . A T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4065;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.32;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3778,432,0 chrIX 152956 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.69;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3075,354,0 chrIX 153010 . A T 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.803;QD=20.17;ReadPosRankSum=1.928;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2413,279,0 chrIX 153017 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.31;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2322,270,0 chrIX 153367 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.10;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3440,387,0 chrIX 153370 . T C 3215 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.61;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3248,378,0 chrIX 153400 . A T 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.130;QD=19.38;ReadPosRankSum=0.268;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2785,297,0 chrIX 153463 . A G 2802 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.6598;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.39;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2835,330,0 chrIX 153593 . G A 4027.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.4937;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.89;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4027,468,0 chrIX 153725 . A G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.089;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.462;QD=21.71;ReadPosRankSum=1.658;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3116,357,0 chrIX 153913 . T A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.62;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3245,369,0 chrIX 154387 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2469,276,0 chrIX 154834 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.332;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.287;QD=22.93;ReadPosRankSum=1.707;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3267,372,0 chrIX 154922 . A G 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.884;QD=20.45;ReadPosRankSum=1.684;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2957,348,0 chrIX 155016 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.12;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2484,279,0 chrIX 155033 . A T 2474 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.49;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2507,294,0 chrIX 155200 . A T 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=4.805;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.107;QD=22.25;ReadPosRankSum=1.705;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2925,333,0 chrIX 155270 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.53;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2682,309,0 chrIX 155292 . A T 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=7.324;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.808;QD=20.22;ReadPosRankSum=1.629;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2763,330,0 chrIX 155480 . A C 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.9872;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.039;QD=22.77;ReadPosRankSum=1.692;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4008,459,0 chrIX 155522 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.6584;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.35;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3643,423,0 chrIX 155663 . T G 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.082;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.454;QD=22.79;ReadPosRankSum=1.619;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2836,333,0 chrIX 155702 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2622,297,0 chrIX 155792 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.40;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1938,219,0 chrIX 156015 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=4.831;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.498;QD=22.92;ReadPosRankSum=1.685;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3346,384,0 chrIX 156029 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.2592;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.49;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2878,345,0 chrIX 156304 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=162;Dels=0.00;FS=6.605;HaplotypeScore=13.0105;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.099;QD=21.43;ReadPosRankSum=2.374;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3471,399,0 chrIX 156711 . G T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.44;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4197,468,0 chrIX 156724 . A C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.590;QD=20.10;ReadPosRankSum=1.693;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3557,408,0 chrIX 156752 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=169;Dels=0.00;FS=3.029;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.037;QD=17.61;ReadPosRankSum=2.420;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3009,357,0 chrIX 156935 . C A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=24.72;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4078,456,0 chrIX 157092 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.00;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2195,246,0 chrIX 157314 . T A 1549 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.45;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1582,180,0 chrIX 157619 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.67;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3792,441,0 chrIX 157961 . C G 4286.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.75;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4286,507,0 chrIX 157967 . G A 4671.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.58;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4671,528,0 chrIX 158276 . T G 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=20.5627;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.736;QD=19.97;ReadPosRankSum=1.938;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,190:196:99:3915,459,0 chrIX 158408 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.03;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3785,455,0 chrIX 158675 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.6351;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.50;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3172,363,0 chrIX 158843 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.982;QD=17.82;ReadPosRankSum=-0.517;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2439,261,0 chrIX 158854 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.88;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2582,294,0 chrIX 158912 . T C 2061 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=17.03;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2094,243,0 chrIX 159221 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.49;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3712,420,0 chrIX 159305 . C G 3952.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4250;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.96;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3952,462,0 chrIX 159685 . A G 6496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=313;Dels=0.00;FS=9.419;HaplotypeScore=31.4334;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.323;QD=20.75;ReadPosRankSum=2.906;SB=-3.527e+03 GT:AD:DP:GQ:PL 1/1:4,306:313:99:6496,744,0 chrIX 160007 . G C 5730.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.8988;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.70;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,261:264:99:5730,674,0 chrIX 160170 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.40;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:3753,438,0 chrIX 160453 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.00;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2805,318,0 chrIX 160457 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.81;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2610,300,0 chrIX 160514 . T C 2819 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.28;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2852,336,0 chrIX 160585 . G T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.45;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3267,372,0 chrIX 160764 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1762,207,0 chrIX 160880 . G C 1511 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=18.3135;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=14.25;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:106:99:1544,183,0 chrIX 161147 . A G 6670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=319;Dels=0.00;FS=3.413;HaplotypeScore=20.6201;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.899;QD=20.91;ReadPosRankSum=1.721;SB=-3.485e+03 GT:AD:DP:GQ:PL 1/1:1,315:319:99:6670,788,0 chrIX 161384 . G A 4451.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.03;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4451,510,0 chrIX 161598 . C T 4393.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.49;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4393,489,0 chrIX 161651 . G A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.5874;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.94;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4588,528,0 chrIX 161738 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.9273;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.094;QD=21.55;ReadPosRankSum=1.641;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4116,483,0 chrIX 161795 . T C 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=221;Dels=0.00;FS=7.949;HaplotypeScore=12.4217;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.945;QD=20.79;ReadPosRankSum=2.427;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,217:221:99:4594,540,0 chrIX 161828 . A G 5043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=238;Dels=0.01;FS=0.000;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.993;QD=21.19;ReadPosRankSum=2.408;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5043,585,0 chrIX 161894 . A G 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=215;Dels=0.00;FS=2.753;HaplotypeScore=19.0728;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.417;QD=20.38;ReadPosRankSum=2.324;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4381,510,0 chrIX 162177 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.93;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4123,480,0 chrIX 162266 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.540;QD=22.02;ReadPosRankSum=1.710;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3413,405,0 chrIX 163105 . A T 225 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=18.75;SB=-1.039e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:258,30,0 chrIX 163114 . G T 229 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=19.08;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:262,30,0 chrIX 163129 . A G 218 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.82;SB=-4.898e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:30:251,30,0 chrIX 163139 . C A 178.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=16.18;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:24:211,24,0 chrIX 163161 . C T 127.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=18.16;SB=-7.763e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:160,18,0 chrIX 163427 . A T 2422 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.07;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2455,279,0 chrIX 163440 . T C 2345 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.32;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2378,276,0 chrIX 163812 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.35;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3899,444,0 chrIX 164017 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3698,411,0 chrIX 164279 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2239,261,0 chrIX 164332 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2080,234,0 chrIX 164475 . A G 2196 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.61;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2229,258,0 chrIX 164883 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2633,306,0 chrIX 165018 . A G 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.577;QD=21.10;ReadPosRankSum=1.681;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1447,168,0 chrIX 165039 . C G 1575 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.98;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1608,183,0 chrIX 165195 . G T 2964 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5680;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.90;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2997,351,0 chrIX 166074 . C A 1292 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.51;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1325,159,0 chrIX 166116 . G C 1461 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.56;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1494,174,0 chrIX 166141 . T A 1404 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=23.02;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1437,162,0 chrIX 166175 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.00;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1683,192,0 chrIX 166203 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.13;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1787,207,0 chrIX 166350 . A G 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.762;QD=20.21;ReadPosRankSum=1.640;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1549,180,0 chrIX 166355 . C A 1516 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.77;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1549,177,0 chrIX 166510 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.075;QD=23.28;ReadPosRankSum=1.707;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3222,369,0 chrIX 166640 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=383.1870;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.166;QD=21.40;ReadPosRankSum=1.667;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3403,396,0 chrIX 166778 . T A 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.933;DP=209;Dels=0.00;FS=6.253;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.897;QD=19.62;ReadPosRankSum=1.815;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4101,458,0 chrIX 166805 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=185;Dels=0.00;FS=5.993;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.115;QD=17.17;ReadPosRankSum=2.907;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3209,381,0 chrIX 166895 . G A 4092.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.1440;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.42;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4092,456,0 chrIX 166934 . G A 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.314;QD=21.79;ReadPosRankSum=1.175;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4357,483,0 chrIX 167635 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2400,279,0 chrIX 167971 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4418;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.30;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4126,483,0 chrIX 168127 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=4.629;HaplotypeScore=16.0666;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.847;QD=19.14;ReadPosRankSum=1.713;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3484,405,0 chrIX 168175 . A G 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.260;QD=18.69;ReadPosRankSum=1.709;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2911,339,0 chrIX 168187 . A G 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=142;Dels=0.00;FS=2.767;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.788;QD=19.27;ReadPosRankSum=2.380;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2770,318,0 chrIX 168217 . T C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.571;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.499;QD=19.25;ReadPosRankSum=1.706;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2612,303,0 chrIX 168244 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.39;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2340,273,0 chrIX 168373 . A G 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=103;Dels=0.00;FS=5.712;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.618;QD=19.79;ReadPosRankSum=2.932;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2071,246,0 chrIX 168511 . A G 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.082;QD=20.38;ReadPosRankSum=1.650;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1765,207,0 chrIX 169256 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=170;Dels=0.00;FS=5.217;HaplotypeScore=9.6174;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-0.213;QD=20.03;ReadPosRankSum=2.876;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3405,393,0 chrIX 169294 . A T 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=157;Dels=0.00;FS=5.727;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.096;QD=20.16;ReadPosRankSum=2.955;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3198,366,0 chrIX 169444 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=20.09;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2624,294,0 chrIX 169492 . T C 199.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.055;DP=115;Dels=0.00;FS=3.811;HaplotypeScore=10.6840;MLEAC=1;MLEAF=0.500;MQ=41.11;MQ0=0;MQRankSum=0.657;QD=1.73;ReadPosRankSum=-5.633;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,16:115:99:229,0,431 chrIX 169666 . C G 2562 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=15.91;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:2595,303,0 chrIX 169671 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=3.119;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=0.086;QD=16.40;ReadPosRankSum=1.711;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:2723,318,0 chrIX 169820 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.84;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2414,276,0 chrIX 170156 . C A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.99;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4575,516,0 chrIX 170408 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.23;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4506,501,0 chrIX 170432 . A T 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=3.109;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.253;QD=19.74;ReadPosRankSum=1.576;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3514,414,0 chrIX 170681 . G A 4896.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.05;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4896,558,0 chrIX 170921 . A C 4103.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.15;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4103,471,0 chrIX 171065 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.66;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3579,417,0 chrIX 171083 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=189;Dels=0.00;FS=10.040;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.133;QD=19.30;ReadPosRankSum=2.910;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:3647,432,0 chrIX 171154 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.59;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3265,372,0 chrIX 171278 . T C 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=135;Dels=0.00;FS=8.911;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=0.619;QD=18.89;ReadPosRankSum=2.191;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2583,303,0 chrIX 171281 . A G 2546 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=19.58;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2579,303,0 chrIX 171535 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=18.31;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1498,174,0 chrIX 171556 . T A 1026 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=16.03;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1059,120,0 chrIX 171558 . T C 1000 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=16.39;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1033,117,0 chrIX 171569 . C T 898 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=14.25;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:931,105,0 chrIX 171616 . T A 1285 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=18.10;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1318,147,0 chrIX 171632 . G A 1312 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=57.7460;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=17.97;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1345,150,0 chrIX 171711 . T A 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=115;Dels=0.00;FS=5.353;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.149;QD=21.70;ReadPosRankSum=2.939;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2529,294,0 chrIX 171806 . A G 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=5.085;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=1.195;QD=23.87;ReadPosRankSum=1.705;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3112,357,0 chrIX 171891 . C T 2834 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.67;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2867,324,0 chrIX 171894 . A G 2675 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.57;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2708,318,0 chrIX 171999 . T C 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.502;HaplotypeScore=9.1926;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.433;QD=22.07;ReadPosRankSum=1.711;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3707,443,0 chrIX 172044 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.100;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.657;QD=24.15;ReadPosRankSum=1.356;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3333,375,0 chrIX 172074 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.40;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2473,285,0 chrIX 172231 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.22;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2940,336,0 chrIX 172693 . T C 3034 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3067,354,0 chrIX 172939 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.88;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3138,363,0 chrIX 173114 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.42;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3452,402,0 chrIX 173294 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=165;Dels=0.00;FS=10.289;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.411;QD=22.35;ReadPosRankSum=2.957;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3687,432,0 chrIX 173732 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=17.2330;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.55;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3862,429,0 chrIX 173826 . T G 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.620;QD=19.58;ReadPosRankSum=1.710;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3088,360,0 chrIX 173827 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.29;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2965,342,0 chrIX 174252 . A G 5057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.254;QD=23.09;ReadPosRankSum=1.684;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5057,576,0 chrIX 174273 . A G 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=221;Dels=0.00;FS=5.221;HaplotypeScore=5.1541;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.172;QD=21.58;ReadPosRankSum=3.413;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:4,217:221:99:4770,552,0 chrIX 174304 . T G 3494.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.09;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3494,411,0 chrIX 174345 . T A 2627 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.60;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2660,312,0 chrIX 174391 . T A 2718 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0773;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=19.99;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2751,309,0 chrIX 174414 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.0658;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=20.40;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3326,390,0 chrIX 174449 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=164;Dels=0.00;FS=6.004;HaplotypeScore=4.1409;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;MQRankSum=-0.596;QD=19.47;ReadPosRankSum=2.957;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:99:3226,375,0 chrIX 174453 . A T 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;MQRankSum=-1.180;QD=20.50;ReadPosRankSum=1.710;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3251,369,0 chrIX 174511 . G C 3017 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.3317;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.66;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3050,360,0 chrIX 174546 . T G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7214;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.576;QD=24.01;ReadPosRankSum=1.710;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3721,429,0 chrIX 174641 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=16.48;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2241,261,0 chrIX 174643 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=18.11;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2442,270,0 chrIX 174652 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=15.66;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2210,255,0 chrIX 174680 . C A 2144 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=15.65;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2177,246,0 chrIX 174681 . G A 2147 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=15.56;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2180,246,0 chrIX 174694 . G T 2365 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=16.20;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2398,267,0 chrIX 174751 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.6154;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.89;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3036,348,0 chrIX 174904 . A C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=4.630;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;MQRankSum=-0.424;QD=22.81;ReadPosRankSum=1.709;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3513,402,0 chrIX 174988 . A C 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=105;Dels=0.00;FS=9.807;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-0.452;QD=22.10;ReadPosRankSum=2.876;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2353,273,0 chrIX 175014 . T A 2123 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.11;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2156,246,0 chrIX 175120 . C A 1577 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=17.92;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1610,189,0 chrIX 175220 . A G 583 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=8.83;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:72:616,72,0 chrIX 175368 . A G 2247 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.41;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2280,264,0 chrIX 175399 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.22;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2471,294,0 chrIX 175484 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=5.512;HaplotypeScore=7.8518;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.804;QD=22.98;ReadPosRankSum=1.709;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3562,417,0 chrIX 175568 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.2928;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.53;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3134,351,0 chrIX 175621 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.99;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2972,336,0 chrIX 175751 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.062;DP=146;Dels=0.00;FS=2.881;HaplotypeScore=5.3293;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.153;QD=19.21;ReadPosRankSum=2.062;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2838,333,0 chrIX 175755 . T G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.215;QD=19.67;ReadPosRankSum=1.656;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2728,321,0 chrIX 176033 . A G 2400 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=13.64;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:2433,282,0 chrIX 176034 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.16;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2540,285,0 chrIX 176255 . G A 4601.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=24.34;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4601,513,0 chrIX 176421 . G T 4917.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.7903;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.19;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4917,546,0 chrIX 176578 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.70;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5199,594,0 chrIX 176678 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.0306;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.37;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4726,552,0 chrIX 176756 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.5416;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.95;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:4606,525,0 chrIX 176759 . G A 4471.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.6416;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.48;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:4471,501,0 chrIX 176839 . A G 5160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=247;Dels=0.00;FS=3.028;HaplotypeScore=15.2057;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.152;QD=20.89;ReadPosRankSum=2.420;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:2,244:247:99:5160,594,0 chrIX 176939 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=4.607;HaplotypeScore=7.7696;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;MQRankSum=0.183;QD=18.67;ReadPosRankSum=1.699;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:3883,456,0 chrIX 176950 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=18.07;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:3650,414,0 chrIX 176954 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=18.27;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3508,402,0 chrIX 177173 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.0781;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.57;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3925,447,0 chrIX 177266 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.38;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2556,297,0 chrIX 177413 . A G 1046 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;QD=16.34;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1079,132,0 chrIX 177466 . C T 441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.621;DP=30;Dels=0.00;FS=3.784;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.457;QD=14.70;ReadPosRankSum=-1.621;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:2,28:30:57:474,57,0 chrIX 177586 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.26;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:2036,231,0 chrIX 177735 . A C 2850 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.52;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2883,342,0 chrIX 177772 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=3.149;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.817;QD=20.75;ReadPosRankSum=1.689;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3299,384,0 chrIX 177966 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.09;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3600,426,0 chrIX 178050 . G C 3934.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.14;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3934,456,0 chrIX 178136 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.92;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2795,324,0 chrIX 178160 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.03;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2938,333,0 chrIX 178183 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=3.062;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.937;QD=18.08;ReadPosRankSum=1.691;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3124,372,0 chrIX 178237 . T G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=3.890;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.507;QD=18.47;ReadPosRankSum=1.712;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3154,366,0 chrIX 178558 . T C 6136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=288;Dels=0.00;FS=3.507;HaplotypeScore=14.7765;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.382;QD=21.31;ReadPosRankSum=1.708;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:1,286:287:99:6136,714,0 chrIX 179020 . C A 6085.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=19.5167;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.89;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6085,702,0 chrIX 179065 . T C 5847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=18.8468;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.351;QD=20.02;ReadPosRankSum=1.684;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,290:292:99:5847,689,0 chrIX 179273 . A G 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=8.1045;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.498;QD=17.54;ReadPosRankSum=1.719;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,265:270:99:4737,555,0 chrIX 179275 . C T 4988.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=4.9497;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.27;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:4988,573,0 chrIX 179431 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4911;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.25;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3665,435,0 chrIX 179515 . C T 2303 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=21.93;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2336,267,0 chrIX 179673 . G A 807 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=15.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:93:840,93,0 chrIX 179912 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.46;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1990,225,0 chrIX 180192 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.0968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3621,429,0 chrIX 180309 . C G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.84;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3247,375,0 chrIX 180792 . A T 2301 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.11;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2334,267,0 chrIX 180798 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.92;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2190,252,0 chrIX 180915 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=116;Dels=0.00;FS=8.407;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.139;QD=22.15;ReadPosRankSum=2.407;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2602,309,0 chrIX 181236 . A G 1863 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1896,216,0 chrIX 181676 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.14;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3022,345,0 chrIX 181677 . A G 2959 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.92;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2992,342,0 chrIX 181912 . A G 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=98;Dels=0.00;FS=2.797;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.666;QD=21.47;ReadPosRankSum=2.400;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2137,246,0 chrIX 181955 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.97;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2430,270,0 chrIX 182496 . T C 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=5.911;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.599;QD=21.54;ReadPosRankSum=1.688;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1735,198,0 chrIX 182525 . G T 1775 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1808,204,0 chrIX 182636 . A G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=4.983;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.622;QD=23.61;ReadPosRankSum=1.677;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1544,177,0 chrIX 182837 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.09;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1847,213,0 chrIX 183064 . T G 2781 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.45;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2814,327,0 chrIX 183210 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.16;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1787,213,0 chrIX 183251 . C T 100.26 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.04;FS=0.000;HaplotypeScore=21.5678;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=0.98;SB=-6.673e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:15:133,15,0 chrIX 183280 . A G 1018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.1069;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.306;QD=11.84;ReadPosRankSum=1.691;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1051,123,0 chrIX 183332 . A G 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=102;Dels=0.00;FS=10.567;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.313;QD=21.42;ReadPosRankSum=2.930;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:3,97:102:99:2218,267,0 chrIX 183552 . G T 1766 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.78;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1799,201,0 chrIX 183567 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.49;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1592,183,0 chrIX 183636 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.254;QD=19.05;ReadPosRankSum=1.653;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1690,198,0 chrIX 183650 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.38;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1689,189,0 chrIX 183786 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.45;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1856,210,0 chrIX 183865 . A T 2174 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.2544;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.18;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2207,249,0 chrIX 183943 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.2649;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.55;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3367,390,0 chrIX 184053 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.64;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2659,306,0 chrIX 184081 . A G 2620 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.70;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2653,309,0 chrIX 184082 . A C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=6.171;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.271;QD=17.95;ReadPosRankSum=2.382;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2654,303,0 chrIX 184200 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3589,411,0 chrIX 184665 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.65;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2774,324,0 chrIX 184857 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=136;Dels=0.00;FS=2.956;HaplotypeScore=18.2003;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.648;QD=21.11;ReadPosRankSum=2.395;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2904,336,0 chrIX 184925 . C A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.07;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3332,372,0 chrIX 184947 . T A 2653 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.22;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2686,315,0 chrIX 185013 . T G 2701 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.78;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2734,315,0 chrIX 185152 . T A 2568 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.4882;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.22;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2601,300,0 chrIX 185321 . C A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.68;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3629,414,0 chrIX 185367 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=159;Dels=0.00;FS=2.652;HaplotypeScore=11.4173;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.151;QD=21.94;ReadPosRankSum=2.386;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,153:159:99:3488,411,0 chrIX 185961 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=169;Dels=0.00;FS=2.860;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.762;QD=20.60;ReadPosRankSum=2.376;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3482,416,0 chrIX 186053 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2741,309,0 chrIX 186216 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2056,228,0 chrIX 186691 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.25;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5138,579,0 chrIX 186739 . G A 5324.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.4869;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.45;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5324,597,0 chrIX 186987 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.79;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3879,438,0 chrIX 187066 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.4435;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.52;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3744,429,0 chrIX 187102 . T A 4357.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.05;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4357,513,0 chrIX 187351 . A G 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.307;QD=20.10;ReadPosRankSum=1.671;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:1,225:228:99:4583,537,0 chrIX 187360 . A G 4544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=229;Dels=0.00;FS=2.999;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.713;QD=19.84;ReadPosRankSum=2.385;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:4544,528,0 chrIX 187423 . T C 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=221;Dels=0.00;FS=9.150;HaplotypeScore=10.9289;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.323;QD=21.00;ReadPosRankSum=2.941;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:3,218:221:99:4642,534,0 chrIX 187760 . T A 1693 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1726,198,0 chrIX 187858 . T C 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=64;Dels=0.00;FS=5.092;HaplotypeScore=21.2353;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.335;QD=14.25;ReadPosRankSum=1.617;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:7,57:64:99:945,111,0 chrIX 187968 . T C 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.8656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.294;QD=22.54;ReadPosRankSum=1.699;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2422,279,0 chrIX 188822 . C G 3997.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.84;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3997,462,0 chrIX 188845 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.78;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3834,432,0 chrIX 188870 . A T 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=2.942;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.356;QD=19.07;ReadPosRankSum=2.328;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3122,348,0 chrIX 188877 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=3.690;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=0.060;QD=17.65;ReadPosRankSum=1.684;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2592,309,0 chrIX 188907 . C G 2337 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=17.57;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2370,276,0 chrIX 189176 . T A 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=168;Dels=0.00;FS=3.928;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=-0.082;QD=19.57;ReadPosRankSum=1.670;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3288,375,0 chrIX 189206 . C T 3147 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=17.98;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3180,378,0 chrIX 189211 . C T 2937 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=17.59;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2970,342,0 chrIX 189215 . T C 2846 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=16.45;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2879,336,0 chrIX 189258 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=12.8167;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.10;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2769,312,0 chrIX 189332 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.89;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2519,288,0 chrIX 189347 . T C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.859;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-1.537;QD=18.97;ReadPosRankSum=1.704;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2404,282,0 chrIX 189367 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=123;Dels=0.00;FS=10.513;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=1.075;QD=18.02;ReadPosRankSum=2.827;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2250,261,0 chrIX 189470 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=17.2303;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.06;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2666,300,0 chrIX 189702 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.12;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3219,372,0 chrIX 189777 . A G 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.587;QD=21.99;ReadPosRankSum=2.936;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2452,285,0 chrIX 189818 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.33;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2786,315,0 chrIX 189896 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2446,273,0 chrIX 189936 . G T 1915 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.28;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1948,222,0 chrIX 190022 . A G 3019 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.41;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3052,354,0 chrIX 190035 . A C 3064 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3147;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.15;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3097,360,0 chrIX 190065 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=5.295;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.335;QD=21.44;ReadPosRankSum=1.693;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3795,450,0 chrIX 190174 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=162;Dels=0.00;FS=8.108;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.190;QD=20.85;ReadPosRankSum=2.404;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3377,404,0 chrIX 190296 . G A 4218.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.18;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4218,480,0 chrIX 190550 . G C 3000 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3033,351,0 chrIX 190828 . G C 2214 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2247,267,0 chrIX 191287 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.11;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3859,426,0 chrIX 191432 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.506;QD=22.48;ReadPosRankSum=1.707;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3135,360,0 chrIX 191573 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.553;DP=125;Dels=0.00;FS=5.651;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.130;QD=20.75;ReadPosRankSum=2.911;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2627,303,0 chrIX 191675 . A G 2998 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.97;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3031,351,0 chrIX 192137 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.94;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2534,282,0 chrIX 192413 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=6.349;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.311;QD=22.52;ReadPosRankSum=2.384;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3378,393,0 chrIX 192566 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.96;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3697,435,0 chrIX 192662 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.26;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3718,417,0 chrIX 192881 . G T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.9856;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.71;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3810,426,0 chrIX 192935 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4206;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.26;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3409,393,0 chrIX 193041 . C A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.1850;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.69;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4946,587,0 chrIX 193298 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.73;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4023,465,0 chrIX 193482 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=3.332;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.432;QD=21.22;ReadPosRankSum=1.714;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4159,480,0 chrIX 193744 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.058;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.485;QD=20.96;ReadPosRankSum=1.425;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3417,380,0 chrIX 193815 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.66;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2491,285,0 chrIX 193939 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.90;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2687,321,0 chrIX 194026 . A G 2516 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.67;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2549,291,0 chrIX 194170 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.38;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2786,321,0 chrIX 194267 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.92;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3254,363,0 chrIX 194587 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.13;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2231,261,0 chrIX 194605 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.44;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2308,267,0 chrIX 194686 . T C 3026 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3059,351,0 chrIX 195082 . T C 2784 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.25;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2817,333,0 chrIX 195274 . C G 1329 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.84;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1362,159,0 chrIX 195295 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.95;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1170,132,0 chrIX 195521 . T A 1687 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.91;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1720,192,0 chrIX 195532 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.49;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1631,186,0 chrIX 195861 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=9.025;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.842;QD=23.80;ReadPosRankSum=2.400;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2365,270,0 chrIX 196208 . G A 4218.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.97;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4218,483,0 chrIX 196228 . T G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=2.726;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.614;QD=20.85;ReadPosRankSum=2.392;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3566,423,0 chrIX 196237 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.16;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3682,414,0 chrIX 196248 . C G 3849.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.26;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3849,453,0 chrIX 196424 . T C 2464 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=20.53;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2497,300,0 chrIX 196722 . G T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.31;MQ0=94;MQRankSum=1.763;QD=0.21;ReadPosRankSum=-1.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,20:109:53:53,0,129 chrIX 197024 . G A 69.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.19;MQ0=9;MQRankSum=-0.736;QD=4.63;ReadPosRankSum=0.736;SB=-4.575e+01 GT:AD:DP:GQ:PL 1/1:5,9:15:12:102,12,0 chrIX 197027 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.68;MQ0=6;QD=2.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,6:11:6:54,6,0 chrIX 197490 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=12.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:82,9,0 chrIX 197501 . T A 44.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:77,9,0 chrIX 197558 . A G 362 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;QD=12.07;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:51:395,51,0 chrIX 197560 . C T 437 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;QD=14.57;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:54:470,54,0 chrIX 197573 . T A 552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;MQRankSum=-1.733;QD=14.15;ReadPosRankSum=1.644;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:69:585,69,0 chrIX 197700 . G A 625 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=15.24;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:75:658,75,0 chrIX 197744 . C T 863 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=12.15;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:896,99,0 chrIX 197782 . G T 1426 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=85.0527;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=15.50;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1459,162,0 chrIX 197790 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=15.34;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1521,171,0 chrIX 197823 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=19.19;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1875,207,0 chrIX 197949 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=22.08;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3356,378,0 chrIX 197958 . A G 3106 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.04;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3139,377,0 chrIX 198073 . A G 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=3.464;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.013;QD=22.34;ReadPosRankSum=1.706;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2982,354,0 chrIX 198171 . G A 4749.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.05;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4749,525,0 chrIX 198273 . C T 4243.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9563;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.81;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4243,486,0 chrIX 198411 . C G 4302.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.01;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4302,512,0 chrIX 198588 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.17;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4157,459,0 chrIX 198648 . G T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.33;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3626,414,0 chrIX 198924 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=159;Dels=0.00;FS=8.794;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.260;QD=22.99;ReadPosRankSum=2.418;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3656,423,0 chrIX 199233 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0233;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.49;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3084,351,0 chrIX 199445 . T C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=3.131;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.593;QD=21.44;ReadPosRankSum=1.685;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3163,366,0 chrIX 199536 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.392;QD=19.84;ReadPosRankSum=1.715;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3948,456,0 chrIX 199588 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.19;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3163,372,0 chrIX 199623 . T A 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.127;DP=122;Dels=0.00;FS=7.456;HaplotypeScore=5.9271;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.050;QD=17.21;ReadPosRankSum=2.409;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2133,243,0 chrIX 199628 . C T 2160 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.3479;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.70;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2193,255,0 chrIX 200289 . T A 1456 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=20.22;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1489,165,0 chrIX 200290 . T A 1521 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;QD=21.42;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1554,174,0 chrIX 200291 . G A 1534 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;QD=21.61;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1567,174,0 chrIX 200298 . G A 1383 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=17.51;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1416,159,0 chrIX 200317 . C T 1157 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.77;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1190,135,0 chrIX 200320 . C T 1031 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.52;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1064,126,0 chrIX 200326 . C T 874 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.67;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:907,108,0 chrIX 200335 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.97;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:997,114,0 chrIX 200346 . A G 846 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.43;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:879,102,0 chrIX 200366 . G T 1145 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=12.72;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1178,132,0 chrIX 200384 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=15.20;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1401,165,0 chrIX 200410 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=14.74;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1301,153,0 chrIX 200415 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=15.07;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1359,156,0 chrIX 200428 . A C 1259 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=15.17;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1292,153,0 chrIX 200574 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.48;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3372,393,0 chrIX 200883 . T C 2628 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2661,306,0 chrIX 201057 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.94;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1499,174,0 chrIX 201167 . C G 1190 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.89;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1223,141,0 chrIX 201647 . C T 5289.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.5896;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.82;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5289,591,0 chrIX 202086 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.11;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3069,363,0 chrIX 202263 . A T 2941 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.45;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2974,345,0 chrIX 202303 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.02;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2741,321,0 chrIX 202381 . A T 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=9.484;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.968;QD=21.63;ReadPosRankSum=2.416;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3234,366,0 chrIX 202393 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.63;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3301,398,0 chrIX 202695 . T G 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=230;Dels=0.00;FS=5.936;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.218;QD=20.47;ReadPosRankSum=2.943;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:4707,566,0 chrIX 203073 . C T 2326 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.22;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2359,285,0 chrIX 203531 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=2.026;QD=18.58;ReadPosRankSum=2.407;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2188,255,0 chrIX 204071 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=4.607;HaplotypeScore=16.0729;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.683;QD=20.45;ReadPosRankSum=1.682;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4274,515,0 chrIX 204609 . A T 4615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.228;QD=22.51;ReadPosRankSum=1.664;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4615,534,0 chrIX 204865 . G T 2910 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.73;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2943,330,0 chrIX 205192 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;QD=21.92;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1589,189,0 chrIX 205210 . T G 1132 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;QD=24.09;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1165,135,0 chrIX 205658 . A C 939 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=18.01;MQ0=28;QD=9.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:972,114,0 chrIX 205730 . C T 2394 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=32;QD=16.51;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2427,279,0 chrIX 205949 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=20.27;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3730,432,0 chrIX 206250 . A G 2026 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=135;Dels=0.00;FS=3.049;HaplotypeScore=16.5966;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=25;MQRankSum=-0.615;QD=15.01;ReadPosRankSum=2.383;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2059,246,0 chrIX 206400 . G C 1503 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.9466;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=23;QD=11.30;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:1536,180,0 chrIX 206428 . G A 710 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=41;QD=6.28;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:87:743,87,0 chrIX 206802 . G T 539 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=21.47;MQ0=19;QD=12.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:43:66:572,66,0 chrIX 207669 . C T 2257 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=20;QD=15.67;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2290,255,0 chrIX 208140 . T C 490 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=80;Dels=0.00;FS=11.614;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=15.99;MQ0=22;MQRankSum=0.358;QD=6.12;ReadPosRankSum=1.613;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,79:80:63:523,63,0 chrIX 208404 . C T 567 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.79;MQ0=41;QD=5.25;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,108:108:69:600,69,0 chrIX 209019 . G A 725 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=21;QD=13.18;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:87:758,87,0 chrIX 209070 . T G 1952 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=38;QD=15.25;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:1985,234,0 chrIX 209091 . C T 2342 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=46;QD=16.04;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2375,261,0 chrIX 209166 . C T 678 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=25;QD=8.92;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,72:76:81:711,81,0 chrIX 209190 . G A 300 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=11;QD=8.11;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:39:333,39,0 chrIX 209202 . C T 221 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=7;QD=10.52;SB=-4.998e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:30:254,30,0 chrIX 209259 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.80;MQ0=31;QD=0.62;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:2,33:35:6:53,6,0 chrIX 209365 . T C 71.51 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.86;MQ0=18;QD=2.65;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:104,12,0 chrIX 209570 . T C 178.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=50;Dels=0.00;FS=33.062;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.45;MQ0=26;MQRankSum=-2.793;QD=3.56;ReadPosRankSum=2.357;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:3,47:50:24:211,24,0 chrIX 209841 . T C 853 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.12;MQ0=20;QD=8.36;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,102:102:99:886,102,0 chrIX 211204 . C T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.0533;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.51;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4074,468,0 chrIX 211919 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=208;Dels=0.00;FS=7.719;HaplotypeScore=21.4957;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.459;QD=17.93;ReadPosRankSum=2.390;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,204:208:99:3729,441,0 chrIX 212124 . T C 2125 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.43;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2158,258,0 chrIX 212335 . C A 1917 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1950,216,0 chrIX 212523 . A G 2936 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.43;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2969,348,0 chrIX 212822 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.6564;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.22;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4155,462,0 chrIX 213072 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DP=169;Dels=0.00;FS=2.826;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=2.170;QD=20.85;ReadPosRankSum=1.125;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3524,390,0 chrIX 213122 . G A 4199.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.98;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4199,492,0 chrIX 213257 . A T 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=3.050;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.701;QD=23.18;ReadPosRankSum=1.701;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2606,297,0 chrIX 213605 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2401;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.68;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3458,399,0 chrIX 213953 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=159;Dels=0.00;FS=6.104;HaplotypeScore=17.4978;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.978;QD=20.88;ReadPosRankSum=2.403;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3320,390,0 chrIX 214643 . A G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.698;QD=22.75;ReadPosRankSum=1.676;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2900,336,0 chrIX 214844 . G A 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=128;Dels=0.00;FS=10.402;HaplotypeScore=7.2924;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.029;QD=22.41;ReadPosRankSum=2.219;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2902,324,0 chrIX 214890 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=102;Dels=0.00;FS=10.444;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.388;QD=20.81;ReadPosRankSum=2.377;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2156,246,0 chrIX 214913 . T A 1565 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.56;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1598,174,0 chrIX 214921 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=18.71;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1474,168,0 chrIX 215077 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.21;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2782,315,0 chrIX 215993 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.65;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4213,483,0 chrIX 216122 . T C 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=224;Dels=0.00;FS=11.700;HaplotypeScore=19.0058;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.153;QD=19.74;ReadPosRankSum=2.875;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:3,215:224:99:4421,524,0 chrIX 216326 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.603;QD=21.57;ReadPosRankSum=1.706;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2924,336,0 chrIX 216408 . A T 2685 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.50;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2718,306,0 chrIX 216471 . G C 2427 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.57;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2460,288,0 chrIX 216864 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=175;Dels=0.00;FS=3.035;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.390;QD=22.15;ReadPosRankSum=1.652;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3877,456,0 chrIX 217264 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=180;Dels=0.00;FS=3.109;HaplotypeScore=11.4418;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.331;QD=22.98;ReadPosRankSum=1.674;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4137,477,0 chrIX 217389 . A G 4619.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.53;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4619,540,0 chrIX 217459 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.19;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3838,441,0 chrIX 217490 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=186;Dels=0.00;FS=2.862;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.033;QD=21.29;ReadPosRankSum=2.370;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3960,462,0 chrIX 217640 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2917,330,0 chrIX 217786 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.04;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2084,240,0 chrIX 217854 . A G 3994.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3994,476,0 chrIX 217890 . A T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4077,459,0 chrIX 218196 . T C 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=210;Dels=0.01;FS=2.486;HaplotypeScore=12.5868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.273;QD=22.08;ReadPosRankSum=2.937;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:3,203:208:99:4636,540,0 chrIX 218229 . A G 5145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=233;Dels=0.00;FS=31.478;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.049;QD=22.08;ReadPosRankSum=3.423;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:4,227:233:99:5145,617,0 chrIX 218344 . C T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.5654;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.82;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4788,549,0 chrIX 218409 . G A 6760.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.07;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:6760,765,0 chrIX 218556 . A G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.491;QD=20.92;ReadPosRankSum=1.663;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4225,492,0 chrIX 218780 . A G 4350.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.12;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4350,501,0 chrIX 218801 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=217;Dels=0.00;FS=8.340;HaplotypeScore=8.6696;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.699;QD=20.96;ReadPosRankSum=2.427;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4549,534,0 chrIX 219135 . T G 5309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=253;Dels=0.00;FS=3.617;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.540;QD=20.98;ReadPosRankSum=1.691;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5309,615,0 chrIX 219186 . G A 5530.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.3522;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.03;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5530,627,0 chrIX 219851 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6783;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.62;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3401,381,0 chrIX 220209 . A G 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.333;QD=21.77;ReadPosRankSum=1.707;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3059,360,0 chrIX 220345 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.222;QD=22.35;ReadPosRankSum=2.412;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4381,507,0 chrIX 220677 . A T 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.557;QD=22.72;ReadPosRankSum=1.490;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3317,381,0 chrIX 220861 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=3.025;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.144;QD=19.53;ReadPosRankSum=2.371;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1869,219,0 chrIX 220864 . C A 1818 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.98;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1851,204,0 chrIX 220881 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.07;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1739,198,0 chrIX 220939 . G C 1374 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.63;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1407,165,0 chrIX 221568 . G A 5145.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5145,579,0 chrIX 222311 . A T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.60;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3775,420,0 chrIX 222547 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.04;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3483,408,0 chrIX 222583 . A G 3165 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.8512;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.96;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3198,375,0 chrIX 223011 . G C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0603;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.37;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,162:167:99:3590,414,0 chrIX 223465 . C G 3443.01 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.92;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3443,402,0 chrIX 223474 . A G 2855 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=6.382;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=0.760;QD=17.84;ReadPosRankSum=2.373;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2888,345,0 chrIX 223475 . C T 3035 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.62;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3068,345,0 chrIX 223504 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.27;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3248,360,0 chrIX 223691 . C T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.86;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4510,513,0 chrIX 224029 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.86;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2495,291,0 chrIX 224455 . T C 2051 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.79;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2084,240,0 chrIX 224632 . T C 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.883;QD=21.71;ReadPosRankSum=1.698;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2247,264,0 chrIX 224666 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=20.53;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2394,270,0 chrIX 224705 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.138;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-0.351;QD=21.86;ReadPosRankSum=1.581;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3050,357,0 chrIX 224719 . G C 2825 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=21.08;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2858,336,0 chrIX 224745 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.421;QD=19.52;ReadPosRankSum=1.685;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2941,351,0 chrIX 224827 . A G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.155;QD=22.37;ReadPosRankSum=1.701;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2538,294,0 chrIX 224871 . T C 2245 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=19.19;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2278,270,0 chrIX 224875 . T C 2248 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=19.72;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2281,270,0 chrIX 224905 . T C 1903 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9764;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=17.46;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1936,228,0 chrIX 224914 . A G 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.614;QD=17.15;ReadPosRankSum=2.403;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1851,219,0 chrIX 224926 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=18.00;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2067,246,0 chrIX 224976 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.83;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2234,261,0 chrIX 225024 . A G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=98;Dels=0.00;FS=3.026;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.239;QD=23.03;ReadPosRankSum=2.400;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2290,261,0 chrIX 225313 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3019,345,0 chrIX 225363 . T G 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.201;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.707;QD=23.10;ReadPosRankSum=-0.468;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3198,350,0 chrIX 225676 . A T 1080 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.31;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1113,129,0 chrIX 225885 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1459,165,0 chrIX 225923 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.27;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1586,177,0 chrIX 226086 . G T 2253 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.23;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2286,255,0 chrIX 226283 . G T 2303 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.73;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:106:99:2336,264,0 chrIX 226476 . G A 1464 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=9.2767;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.91;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1497,174,0 chrIX 226523 . C T 669 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.58;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,34:36:81:702,81,0 chrIX 226583 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.65;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1032,114,0 chrIX 226591 . A G 1151 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.68;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1184,135,0 chrIX 226674 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.49;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1701,189,0 chrIX 226854 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.63;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2672,300,0 chrIX 227051 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.97;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2845,315,0 chrIX 227053 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.02;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2807,312,0 chrIX 227151 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.77;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2629,303,0 chrIX 227301 . A T 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.933;QD=18.46;ReadPosRankSum=1.632;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1953,219,0 chrIX 227309 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.00;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1914,219,0 chrIX 227411 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.28;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2729,306,0 chrIX 227552 . A G 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=135;Dels=0.00;FS=5.006;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.716;QD=19.59;ReadPosRankSum=1.654;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2678,321,0 chrIX 228015 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.52;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4433,510,0 chrIX 228041 . G A 4996.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.20;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4996,573,0 chrIX 228090 . G T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.88;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5121,576,0 chrIX 228239 . T C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=4.330;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.509;QD=20.34;ReadPosRankSum=1.714;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3804,447,0 chrIX 228759 . C T 4516.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.40;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4516,513,0 chrIX 228786 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.71;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3852,450,0 chrIX 228791 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.17;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3875,432,0 chrIX 228828 . A G 2994 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.95;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3027,357,0 chrIX 229761 . A C 3006 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3039,357,0 chrIX 230025 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1789,204,0 chrIX 230147 . T C 973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=56;Dels=0.00;FS=11.303;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.540;QD=17.37;ReadPosRankSum=1.668;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,53:56:99:1006,117,0 chrIX 230680 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.00;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3956,456,0 chrIX 230953 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.27;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3244,381,0 chrIX 230993 . C A 2932 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.21;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2965,339,0 chrIX 231138 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.6214;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.491;QD=22.49;ReadPosRankSum=1.680;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3046,354,0 chrIX 231745 . G A 4497.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=3;QD=20.63;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4497,513,0 chrIX 231757 . T C 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=1;MQRankSum=-1.732;QD=21.02;ReadPosRankSum=1.715;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4372,504,0 chrIX 232082 . T A 2515 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.96;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2548,297,0 chrIX 232442 . A T 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=260;Dels=0.00;FS=4.282;HaplotypeScore=13.6835;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.813;QD=18.92;ReadPosRankSum=1.705;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:4920,558,0 chrIX 232458 . T C 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=12.3316;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.986;QD=18.40;ReadPosRankSum=1.707;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:5060,582,0 chrIX 232548 . C T 5446.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.3713;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.44;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5446,638,0 chrIX 232990 . A G 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.141;DP=112;Dels=0.01;FS=9.253;HaplotypeScore=8.2967;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.657;QD=19.33;ReadPosRankSum=3.378;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:4,107:111:99:2198,261,0 chrIX 233049 . G A 995 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=9.05;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,104:110:99:1028,120,0 chrIX 233111 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.91;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2187,255,0 chrIX 233225 . C A 2396 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.13;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2429,279,0 chrIX 233327 . T G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.112;DP=133;Dels=0.00;FS=7.909;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.535;QD=19.21;ReadPosRankSum=2.412;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2588,303,0 chrIX 233747 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3461,387,0 chrIX 233990 . G A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3368,387,0 chrIX 234059 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=21.69;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2723,318,0 chrIX 234164 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=4.150;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.933;QD=21.54;ReadPosRankSum=1.679;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2833,333,0 chrIX 234212 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.49;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2633,297,0 chrIX 234607 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.17;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2294,258,0 chrIX 234965 . T C 2823 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2856,336,0 chrIX 235632 . A G 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.504;QD=18.25;ReadPosRankSum=1.708;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2606,300,0 chrIX 235641 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.11;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2394,279,0 chrIX 235921 . C T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.0924;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.87;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4264,489,0 chrIX 236021 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.538;QD=19.62;ReadPosRankSum=1.681;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4002,476,0 chrIX 236624 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.456;QD=21.59;ReadPosRankSum=1.692;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3714,423,0 chrIX 237441 . G C 3152 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.68;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3185,366,0 chrIX 237799 . A C 2609 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2642,303,0 chrIX 237961 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.02;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2037,225,0 chrIX 238349 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.66;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3864,432,0 chrIX 238669 . C T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.68;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3577,408,0 chrIX 238849 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.70;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3993,447,0 chrIX 238924 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.76;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4112,483,0 chrIX 238957 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=189;Dels=0.00;FS=2.635;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.503;QD=21.56;ReadPosRankSum=2.384;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4074,471,0 chrIX 239011 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=177;Dels=0.00;FS=2.658;HaplotypeScore=10.3017;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.811;QD=20.56;ReadPosRankSum=2.339;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3639,420,0 chrIX 239134 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.5018;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.38;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3380,384,0 chrIX 239275 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=6.382;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.008;QD=21.16;ReadPosRankSum=2.388;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3385,390,0 chrIX 239356 . T C 4635.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.95;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4635,546,0 chrIX 239431 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4209,483,0 chrIX 240151 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.7863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4810,558,0 chrIX 240624 . A G 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=237;Dels=0.00;FS=2.574;HaplotypeScore=11.0741;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.665;QD=20.41;ReadPosRankSum=2.911;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:4836,569,0 chrIX 241247 . T A 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.577;QD=21.28;ReadPosRankSum=2.285;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3490,416,0 chrIX 241435 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.77;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3842,429,0 chrIX 242419 . G C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.6848;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.70;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3394,393,0 chrIX 242535 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.35;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2495,285,0 chrIX 242546 . A G 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=1.082;QD=19.10;ReadPosRankSum=1.246;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2153,249,0 chrIX 242713 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.61;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2324,258,0 chrIX 242774 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.95;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3218,357,0 chrIX 242830 . G T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.27;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3491,396,0 chrIX 242863 . T C 2830 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6101;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.11;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2863,336,0 chrIX 243154 . G T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4902;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.30;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3749,426,0 chrIX 243202 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.126;QD=20.89;ReadPosRankSum=1.714;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4010,477,0 chrIX 243261 . T C 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.730;DP=219;Dels=0.00;FS=12.062;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.100;QD=18.05;ReadPosRankSum=3.773;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:5,213:219:99:3953,473,0 chrIX 243264 . T C 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=223;Dels=0.00;FS=2.991;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.228;QD=18.95;ReadPosRankSum=2.394;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:2,219:223:99:4226,486,0 chrIX 243409 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.010;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.170;QD=21.51;ReadPosRankSum=1.710;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3312,398,0 chrIX 243482 . A C 4204.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.5112;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.64;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4204,489,0 chrIX 243519 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=226;Dels=0.00;FS=14.489;HaplotypeScore=18.6960;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.521;QD=18.04;ReadPosRankSum=3.399;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:4,222:226:99:4077,465,0 chrIX 243872 . T C 1870 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.11;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1903,222,0 chrIX 243933 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1530,174,0 chrIX 244062 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.12;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3699,411,0 chrIX 244083 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=138;Dels=0.00;FS=6.390;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.115;QD=21.53;ReadPosRankSum=1.604;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,134:138:99:3004,348,0 chrIX 244454 . G A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.0114;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.83;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4084,474,0 chrIX 244523 . T C 2839 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.56;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:2872,339,0 chrIX 244550 . T C 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=4.627;HaplotypeScore=6.5517;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.047;QD=19.01;ReadPosRankSum=1.662;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2866,336,0 chrIX 244618 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3726;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.55;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3555,417,0 chrIX 244756 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.37;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2169,255,0 chrIX 244765 . T G 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-1.302;QD=17.29;ReadPosRankSum=1.678;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2264,267,0 chrIX 244838 . G C 3173 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.47;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3206,375,0 chrIX 244879 . G A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.87;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3368,390,0 chrIX 245022 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.8669;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.345;QD=20.11;ReadPosRankSum=1.713;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3640,420,0 chrIX 245567 . G C 2313 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7794;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=18.50;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2346,276,0 chrIX 245599 . C G 1490 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=18.40;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1523,180,0 chrIX 245601 . A T 1583 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;QD=20.29;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1616,180,0 chrIX 245626 . A T 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;MQRankSum=-1.732;QD=16.51;ReadPosRankSum=1.682;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1172,135,0 chrIX 245634 . G A 981 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=16.35;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1014,117,0 chrIX 245654 . A G 842 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=39.5554;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:875,102,0 chrIX 245666 . C T 922 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=51.5365;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:955,105,0 chrIX 245671 . G A 856 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=51.5365;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:889,102,0 chrIX 245678 . G A 757 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.024;QD=11.65;ReadPosRankSum=2.825;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:4,61:65:75:790,75,0 chrIX 245681 . T C 805 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:838,99,0 chrIX 245687 . G A 781 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:96:814,96,0 chrIX 245689 . T A 760 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:93:793,93,0 chrIX 245697 . G A 141.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.66;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:21:174,21,0 chrIX 245709 . A G 545 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=8.93;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:66:578,66,0 chrIX 245720 . G A 467 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=8.05;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:57:500,57,0 chrIX 245722 . G A 479 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=8.26;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:57:512,57,0 chrIX 245733 . G A 336 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=6.22;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:42:369,42,0 chrIX 245736 . C T 232 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=4.64;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:30:265,30,0 chrIX 245738 . A G 172.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=0.421;QD=3.44;ReadPosRankSum=2.352;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:2,48:50:24:205,24,0 chrIX 247466 . A G 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=1.12;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:9:70,9,0 chrIX 247472 . A C 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=2.32;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:15:128,15,0 chrIX 247476 . C G 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=3.03;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:18:157,18,0 chrIX 247477 . T G 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=2.98;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:18:155,18,0 chrIX 247481 . C G 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=2.70;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:18:160,18,0 chrIX 247491 . A G 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=2.45;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:18:148,18,0 chrIX 247492 . A T 128.13 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=2.73;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:18:161,18,0 chrIX 247495 . C T 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=27.0622;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=2.64;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:18:157,18,0 chrIX 247508 . T A 90.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.664;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=11.8464;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;MQRankSum=-0.035;QD=1.92;ReadPosRankSum=5.362;SB=2.74 GT:AD:DP:GQ:PL 1/1:14,33:47:15:123,15,0 chrIX 247509 . T C 93.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.991;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=0.885;QD=2.07;ReadPosRankSum=5.069;SB=2.74 GT:AD:DP:GQ:PL 1/1:12,33:45:15:126,15,0 chrIX 247510 . C A 94.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.115;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=1.578;QD=2.09;ReadPosRankSum=5.069;SB=2.74 GT:AD:DP:GQ:PL 1/1:12,33:45:15:127,15,0 chrIX 247514 . T C 96.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.513;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=10.9248;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=2.365;QD=1.72;ReadPosRankSum=6.312;SB=2.74 GT:AD:DP:GQ:PL 1/1:23,33:56:15:129,15,0 chrIX 247516 . C T 101.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.333;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=10.9248;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-0.466;QD=1.81;ReadPosRankSum=6.312;SB=2.74 GT:AD:DP:GQ:PL 1/1:23,33:56:15:134,15,0 chrIX 247522 . T C 84.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.832;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=10.9248;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;MQRankSum=-1.592;QD=1.40;ReadPosRankSum=6.013;SB=2.74 GT:AD:DP:GQ:PL 1/1:24,36:60:15:117,15,0 chrIX 247530 . T C 163.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=12.5021;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=0.500;QD=3.14;ReadPosRankSum=2.355;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:2,50:52:24:196,24,0 chrIX 247539 . A T 296 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=5.80;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:329,39,0 chrIX 247580 . A G 217 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=6.03;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:33:250,33,0 chrIX 247598 . A C 248 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=0;QD=7.29;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:36:281,36,0 chrIX 247608 . G A 226 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.46;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:33:259,33,0 chrIX 247613 . C T 330 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=8.46;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:45:363,45,0 chrIX 247623 . G A 378 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=9.00;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:48:411,48,0 chrIX 247635 . T A 520 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=0;QD=11.06;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:553,63,0 chrIX 247681 . T C 1917 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=20.84;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1950,222,0 chrIX 247757 . C A 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.663;DP=73;Dels=0.00;FS=9.245;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;MQRankSum=-0.984;QD=14.33;ReadPosRankSum=3.532;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:7,66:73:90:1079,90,0 chrIX 247784 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=12.77;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1042,129,0 chrIX 247791 . C A 1085 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=13.23;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1118,135,0 chrIX 247822 . C T 602 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=8.60;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:78:635,78,0 chrIX 247828 . A T 475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.128;DP=69;Dels=0.00;FS=14.113;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;MQRankSum=2.271;QD=6.88;ReadPosRankSum=2.307;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:60:508,60,0 chrIX 247879 . T A 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=102;Dels=0.00;FS=2.406;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-0.457;QD=16.97;ReadPosRankSum=3.370;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:4,98:102:99:1764,198,0 chrIX 247894 . C G 1993 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=16.07;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2026,234,0 chrIX 247899 . A C 2040 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=15.34;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2073,246,0 chrIX 248038 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.11;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3444,399,0 chrIX 248439 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4291;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.45;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3269,369,0 chrIX 248553 . A C 2442 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.23;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2475,294,0 chrIX 248597 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=18.06;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2381,273,0 chrIX 248598 . A G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=132;Dels=0.00;FS=9.759;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.078;QD=17.13;ReadPosRankSum=2.853;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:3,127:132:99:2294,276,0 chrIX 248675 . T A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.27;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3411,396,0 chrIX 249247 . G C 3717.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.3223;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.54;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:3717,435,0 chrIX 249383 . C T 4208.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.25;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4208,477,0 chrIX 249466 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.5156;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.53;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3853,458,0 chrIX 249665 . A T 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.6478;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.685;QD=16.62;ReadPosRankSum=1.709;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2476,282,0 chrIX 249905 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.623;HaplotypeScore=14.7352;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.322;QD=19.28;ReadPosRankSum=1.641;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2983,342,0 chrIX 250155 . T C 4267.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.45;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4267,495,0 chrIX 250194 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.4162;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.186;QD=23.21;ReadPosRankSum=1.673;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4132,483,0 chrIX 250317 . C G 4300.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.75;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4300,501,0 chrIX 250383 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.57;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4072,468,0 chrIX 250521 . C T 4699.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.2706;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.75;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4699,543,0 chrIX 250626 . C T 4538.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.99;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4538,519,0 chrIX 250627 . C T 4693.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.40;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4693,525,0 chrIX 250668 . C T 4501.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.57;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4501,498,0 chrIX 250683 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=215;Dels=0.00;FS=3.112;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.556;QD=16.69;ReadPosRankSum=1.684;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:3589,426,0 chrIX 250881 . T C 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=223;Dels=0.00;FS=3.010;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.187;QD=20.91;ReadPosRankSum=2.370;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:2,215:223:99:4664,551,0 chrIX 251043 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=202;Dels=0.00;FS=4.012;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.322;QD=21.22;ReadPosRankSum=1.610;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4286,495,0 chrIX 251208 . T A 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.539;DP=244;Dels=0.00;FS=4.143;HaplotypeScore=7.3570;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.249;QD=19.40;ReadPosRankSum=1.178;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:4733,549,0 chrIX 251499 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.03;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3429,390,0 chrIX 251544 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.01;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2564,285,0 chrIX 251559 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.194;QD=19.84;ReadPosRankSum=2.359;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2176,255,0 chrIX 251784 . T C 3156 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.5934;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.97;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3189,381,0 chrIX 251979 . T C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.450;QD=19.05;ReadPosRankSum=1.705;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2452,282,0 chrIX 251980 . T C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-1.380;QD=18.53;ReadPosRankSum=1.705;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2405,279,0 chrIX 252033 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.0748;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=17.96;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2134,249,0 chrIX 252102 . A C 2839 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.53;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2872,333,0 chrIX 252225 . C G 3000 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.41;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3033,354,0 chrIX 252235 . T C 2911 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3391;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.94;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2944,345,0 chrIX 252386 . T C 2155 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6885;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.14;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2188,255,0 chrIX 252470 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.17;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2679,303,0 chrIX 252475 . T A 2673 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.56;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2706,303,0 chrIX 253199 . C G 4740.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=20.17;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,231:235:99:4740,543,0 chrIX 253208 . G C 4695.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.2604;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.24;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4695,549,0 chrIX 253277 . C T 4758.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.0199;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.16;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4758,563,0 chrIX 253488 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.5620;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.65;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3924,456,0 chrIX 254261 . T C 5075.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.71;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5075,588,0 chrIX 254315 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.70;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3711,420,0 chrIX 254336 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.83;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3276,395,0 chrIX 254423 . A G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.7894;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.27;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3831,444,0 chrIX 254592 . A G 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=3.019;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.931;QD=21.04;ReadPosRankSum=2.323;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2894,339,0 chrIX 254613 . C A 2864 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.06;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2897,321,0 chrIX 254644 . G T 2438 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=18.61;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2471,294,0 chrIX 254748 . T A 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=3.209;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.905;QD=20.94;ReadPosRankSum=1.551;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2839,315,0 chrIX 254765 . A C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=3.035;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.396;QD=20.47;ReadPosRankSum=2.391;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2633,303,0 chrIX 255059 . G T 2896 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.1288;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.11;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2929,336,0 chrIX 255387 . C T 5464.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.8188;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.05;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5464,621,0 chrIX 255418 . G A 5079.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.4437;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.25;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5079,594,0 chrIX 255474 . C T 5308.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.98;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5308,618,0 chrIX 255654 . A C 3805.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.38;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3805,441,0 chrIX 256063 . C G 510 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:66:543,66,0 chrIX 256649 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.15;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2886,330,0 chrIX 256713 . A C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=4.369;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;MQRankSum=-1.673;QD=20.02;ReadPosRankSum=1.692;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3544,411,0 chrIX 256727 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=0.117;QD=18.75;ReadPosRankSum=1.713;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3356,396,0 chrIX 256763 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=19.16;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2964,342,0 chrIX 256878 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=18.70;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3156,354,0 chrIX 256880 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.222;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=0.082;QD=17.64;ReadPosRankSum=1.608;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2997,348,0 chrIX 256921 . G A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9343;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=19.55;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3362,381,0 chrIX 256931 . T C 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=4.369;HaplotypeScore=3.3320;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;MQRankSum=-1.039;QD=17.77;ReadPosRankSum=1.653;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3143,369,0 chrIX 256951 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0307;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=18.25;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3227,372,0 chrIX 257172 . A G 4492.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=23.27;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4492,522,0 chrIX 257373 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.59;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3912,450,0 chrIX 257381 . T A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.25;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4102,471,0 chrIX 257426 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=28.1375;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.67;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3244,366,0 chrIX 257439 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.26;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2708,318,0 chrIX 257516 . A G 1441 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=0.067;QD=13.72;ReadPosRankSum=1.699;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1474,171,0 chrIX 257521 . C T 1465 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=14.50;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1498,165,0 chrIX 257522 . G T 1441 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=14.13;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1474,162,0 chrIX 257646 . T C 2393 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.36;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2426,285,0 chrIX 257713 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.74;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2642,306,0 chrIX 257834 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3097,363,0 chrIX 257945 . T C 2860 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2893,330,0 chrIX 258339 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.615;QD=23.12;ReadPosRankSum=1.687;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3514,402,0 chrIX 258580 . T A 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.212;HaplotypeScore=5.8714;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.630;QD=19.22;ReadPosRankSum=1.601;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2570,300,0 chrIX 258602 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.09;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2076,240,0 chrIX 258840 . C G 2022 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.06;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2055,237,0 chrIX 258966 . A G 1667 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.10;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1700,204,0 chrIX 259176 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.19;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3756,429,0 chrIX 259195 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.330;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.391;QD=22.54;ReadPosRankSum=1.643;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3493,399,0 chrIX 259323 . T A 3926.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.56;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3926,450,0 chrIX 259491 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.63;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3592,402,0 chrIX 259533 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3063,354,0 chrIX 259701 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.25;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2369,264,0 chrIX 259794 . T C 1594 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1627,195,0 chrIX 260067 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.33;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1526,174,0 chrIX 260120 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.41;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2441,282,0 chrIX 260123 . C T 2465 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.89;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2498,279,0 chrIX 260167 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=17.66;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2241,252,0 chrIX 260223 . A G 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=116;Dels=0.00;FS=3.364;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.828;QD=20.49;ReadPosRankSum=1.672;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2410,282,0 chrIX 260350 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=25.07;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3091,345,0 chrIX 260881 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2801,324,0 chrIX 261013 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2583,300,0 chrIX 261061 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2351,261,0 chrIX 262150 . T G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.6406;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.218;QD=20.47;ReadPosRankSum=1.681;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2838,336,0 chrIX 262330 . C G 2795 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.4080;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.68;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2828,327,0 chrIX 262342 . C A 2798 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.70;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2831,327,0 chrIX 262408 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=4.465;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.089;QD=21.83;ReadPosRankSum=1.707;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3024,351,0 chrIX 262483 . A G 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=3.378;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.732;QD=22.18;ReadPosRankSum=1.701;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2517,291,0 chrIX 262504 . T C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-1.288;QD=22.76;ReadPosRankSum=1.643;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2696,312,0 chrIX 262630 . T A 3188 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.44;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3221,366,0 chrIX 263203 . A G 3133 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3166,369,0 chrIX 263455 . T C 2929 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.88;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2962,348,0 chrIX 263502 . G C 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.889;DP=87;Dels=0.00;FS=92.826;HaplotypeScore=7.6281;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=-1.366;QD=0.30;ReadPosRankSum=-4.835;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,17:87:56:56,0,1211 chrIX 263605 . T C 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.095;QD=22.89;ReadPosRankSum=1.713;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4258,489,0 chrIX 263638 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.24;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4460,501,0 chrIX 263668 . T C 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.1246;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.632;QD=22.54;ReadPosRankSum=1.712;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3832,438,0 chrIX 263753 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.7727;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.92;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3058,342,0 chrIX 263911 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=189;Dels=0.00;FS=3.864;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.713;QD=21.95;ReadPosRankSum=1.657;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,184:189:99:4148,480,0 chrIX 264616 . T C 2553 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.42;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2586,297,0 chrIX 265082 . G A 3406.01 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3406,372,0 chrIX 265091 . A C 3035 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3068,363,0 chrIX 265260 . A G 5308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.614;QD=22.59;ReadPosRankSum=1.629;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5308,621,0 chrIX 265595 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.30;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3378,390,0 chrIX 265664 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.2176;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.92;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,183:188:99:4121,474,0 chrIX 265732 . A C 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=210;Dels=0.00;FS=4.488;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.166;QD=22.16;ReadPosRankSum=1.649;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4654,549,0 chrIX 266717 . A G 5516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=305;Dels=0.00;FS=4.073;HaplotypeScore=7.0316;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.957;QD=18.09;ReadPosRankSum=1.709;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:1,303:305:99:5516,642,0 chrIX 266720 . C T 5773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.597;QD=19.37;ReadPosRankSum=-0.234;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:1,295:298:99:5773,654,0 chrIX 266855 . T C 5412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=264;Dels=0.00;FS=3.025;HaplotypeScore=12.8603;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.268;QD=20.50;ReadPosRankSum=2.421;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:2,259:264:99:5412,636,0 chrIX 266933 . C T 5888.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=19.3398;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.30;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,288:290:99:5888,663,0 chrIX 267149 . G A 6483.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:6483,717,0 chrIX 267668 . A T 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.489;QD=21.96;ReadPosRankSum=1.556;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3447,396,0 chrIX 267764 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.5602;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.312;QD=19.32;ReadPosRankSum=1.707;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2719,321,0 chrIX 268176 . G A 6475.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=19.1558;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.95;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:6475,723,0 chrIX 268278 . C G 6427.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=31.1031;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.28;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:0,296:302:99:6427,747,0 chrIX 268466 . G T 5117.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5117,585,0 chrIX 268690 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4300;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.91;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3440,402,0 chrIX 268845 . G C 1575 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=15.91;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1608,186,0 chrIX 268846 . A T 1558 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=7.123;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.409;QD=16.06;ReadPosRankSum=2.348;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1591,180,0 chrIX 268847 . G C 1510 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=15.41;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1543,186,0 chrIX 269349 . C T 5968.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=19.2381;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.76;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,299:302:99:5968,693,0 chrIX 269574 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.93;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:3861,429,0 chrIX 269580 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.01;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3710,435,0 chrIX 269763 . C G 5558.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.51;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:5558,662,0 chrIX 269793 . C T 5796.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.79;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5796,654,0 chrIX 269829 . G A 7305.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=24.9615;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.34;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:0,312:313:99:7305,825,0 chrIX 269976 . T C 7437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.056;QD=21.81;ReadPosRankSum=1.712;SB=-3.877e+03 GT:AD:DP:GQ:PL 1/1:1,340:341:99:7437,881,0 chrIX 270435 . A G 4674.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.34;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4674,540,0 chrIX 270543 . A T 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.084;QD=18.70;ReadPosRankSum=1.676;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2333,276,0 chrIX 270588 . C A 2623 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.29;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2656,306,0 chrIX 270694 . T A 1414 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=14.58;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1447,177,0 chrIX 270856 . A G 2459 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.77;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2492,288,0 chrIX 271273 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.61;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2607,303,0 chrIX 271556 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=168;Dels=0.00;FS=2.991;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.213;QD=22.24;ReadPosRankSum=2.376;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3737,444,0 chrIX 271960 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.02;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3898,464,0 chrIX 272178 . A T 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=123;Dels=0.00;FS=2.963;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.990;QD=23.46;ReadPosRankSum=2.410;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2918,309,0 chrIX 272205 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.28;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3083,345,0 chrIX 272369 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.39;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3780,420,0 chrIX 273085 . T A 1775 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1808,204,0 chrIX 273183 . A C 3742.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3742,435,0 chrIX 273421 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.54;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3492,396,0 chrIX 273624 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.48;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4272,477,0 chrIX 274009 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.74;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1257,144,0 chrIX 274203 . T C 2695 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.64;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2728,318,0 chrIX 274263 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.017;DP=171;Dels=0.00;FS=7.462;HaplotypeScore=7.0342;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.416;QD=22.40;ReadPosRankSum=4.025;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:6,165:171:99:3831,438,0 chrIX 274456 . A G 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.4203;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.209;QD=22.06;ReadPosRankSum=1.701;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4985,579,0 chrIX 274516 . C T 5156.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.57;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5156,576,0 chrIX 274972 . A G 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.664;QD=17.88;ReadPosRankSum=2.937;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2018,234,0 chrIX 275112 . T C 1796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.514;QD=19.74;ReadPosRankSum=1.656;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1829,213,0 chrIX 275129 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=15.97;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1406,168,0 chrIX 275131 . T C 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.616;QD=16.29;ReadPosRankSum=2.340;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1499,171,0 chrIX 275213 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6168;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.242;QD=22.07;ReadPosRankSum=2.914;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2880,333,0 chrIX 275372 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=3.271;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.429;QD=19.91;ReadPosRankSum=1.715;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4101,486,0 chrIX 275627 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.30;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3749,426,0 chrIX 275654 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.79;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4012,465,0 chrIX 275972 . A G 6482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=303;Dels=0.00;FS=16.287;HaplotypeScore=25.9838;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=2.495;QD=21.39;ReadPosRankSum=3.432;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:4,295:303:99:6482,756,0 chrIX 276104 . T C 7879.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.593;DP=363;Dels=0.00;FS=1.856;HaplotypeScore=28.7900;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.984;QD=21.71;ReadPosRankSum=3.645;SB=-3.465e+03 GT:AD:DP:GQ:PL 1/1:5,357:363:99:7879,917,0 chrIX 276321 . T A 6351.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.82;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:6351,714,0 chrIX 276695 . A G 4493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=210;Dels=0.00;FS=3.028;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.395;QD=21.40;ReadPosRankSum=2.414;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:2,206:210:99:4493,531,0 chrIX 276815 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5369,603,0 chrIX 276932 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4628,525,0 chrIX 277347 . T C 2165 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.62;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2198,252,0 chrIX 277526 . T C 685 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=16.31;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,40:42:81:718,81,0 chrIX 277761 . A C 1953 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.70;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1986,234,0 chrIX 277787 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.55;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2360,273,0 chrIX 278046 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.67;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1882,219,0 chrIX 278070 . T C 2016 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.38;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2049,246,0 chrIX 278108 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.13;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2696,306,0 chrIX 278148 . G C 2284 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.58;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2317,270,0 chrIX 278157 . T A 1818 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.14;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1851,210,0 chrIX 278371 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.65;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2892,321,0 chrIX 278713 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.13;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4480,507,0 chrIX 278878 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.93;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2835,318,0 chrIX 278890 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=147;Dels=0.00;FS=2.915;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.778;QD=18.46;ReadPosRankSum=2.383;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2747,321,0 chrIX 278998 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.41;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3103,345,0 chrIX 279151 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.75;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3229,363,0 chrIX 279163 . T C 2707 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=18.17;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2740,321,0 chrIX 279199 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.18;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2718,303,0 chrIX 279316 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.65;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3789,438,0 chrIX 279526 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=162;Dels=0.00;FS=11.178;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.285;QD=22.10;ReadPosRankSum=2.956;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,156:162:99:3581,423,0 chrIX 279602 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=153;Dels=0.00;FS=9.188;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.859;QD=23.06;ReadPosRankSum=3.355;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:4,148:153:99:3528,405,0 chrIX 279700 . T A 2364 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.30;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2397,270,0 chrIX 280080 . T G 229 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=10.90;SB=-1.518e-02 GT:AD:DP:GQ:PL 1/1:0,20:21:30:262,30,0 chrIX 280133 . A T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.751;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.3542;MLEAC=1;MLEAF=0.500;MQ=51.65;MQ0=0;MQRankSum=1.765;QD=0.47;ReadPosRankSum=-3.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,5:32:45:45,0,181 chrIX 280264 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0306;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.54;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1822,210,0 chrIX 280667 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2395,279,0 chrIX 280877 . A G 3154 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3187,372,0 chrIX 280961 . T A 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.426;QD=19.85;ReadPosRankSum=1.626;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2613,294,0 chrIX 281795 . T C 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.997;HaplotypeScore=13.8151;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.507;QD=21.12;ReadPosRankSum=1.676;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2673,303,0 chrIX 281888 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=188;Dels=0.00;FS=7.406;HaplotypeScore=11.2426;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.230;QD=21.72;ReadPosRankSum=2.423;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4083,488,0 chrIX 282067 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7678;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.66;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3492,399,0 chrIX 282278 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.16;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3186,378,0 chrIX 282401 . T C 2273 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2306,270,0 chrIX 282578 . A G 1719 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1752,204,0 chrIX 282798 . A G 2603 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2636,303,0 chrIX 282931 . A G 1892 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1925,222,0 chrIX 283427 . T C 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=140;Dels=0.00;FS=2.991;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.327;QD=22.04;ReadPosRankSum=2.397;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3119,366,0 chrIX 283497 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.90;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3077,351,0 chrIX 283571 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.202;QD=20.87;ReadPosRankSum=1.703;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2600,303,0 chrIX 283660 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.06;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2327,267,0 chrIX 283758 . T A 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=101;Dels=0.00;FS=3.709;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.772;QD=16.69;ReadPosRankSum=1.286;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1719,201,0 chrIX 283774 . T C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=87;Dels=0.00;FS=3.014;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-1.515;QD=18.23;ReadPosRankSum=2.337;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1619,186,0 chrIX 283803 . A C 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=92;Dels=0.00;FS=3.908;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.552;QD=16.52;ReadPosRankSum=1.694;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1553,180,0 chrIX 283818 . G T 1604 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.02;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1637,189,0 chrIX 283856 . T C 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.315;QD=22.48;ReadPosRankSum=1.653;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2011,234,0 chrIX 283914 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.69;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2474,294,0 chrIX 284092 . A G 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.630;QD=21.70;ReadPosRankSum=1.707;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3006,348,0 chrIX 284095 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.71;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3050,342,0 chrIX 284130 . A C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.77;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3281,384,0 chrIX 284257 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4149;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.30;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3044,342,0 chrIX 284282 . G T 3018 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.10;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3051,351,0 chrIX 284529 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=22.17;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3048,348,0 chrIX 284579 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=21.52;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3507,396,0 chrIX 284586 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=20.54;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3431,390,0 chrIX 284643 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.9650;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.29;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3811,423,0 chrIX 284674 . G T 3166 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.45;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3199,360,0 chrIX 284902 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.609;QD=21.99;ReadPosRankSum=1.634;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3155,360,0 chrIX 284955 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=23.41;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2748,309,0 chrIX 285060 . T A 2643 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.70;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2676,297,0 chrIX 285189 . G T 2058 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.18;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2091,240,0 chrIX 285218 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.65;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2159,249,0 chrIX 285229 . A C 2161 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.16;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2194,252,0 chrIX 285457 . C G 2282 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.94;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,99:104:99:2315,267,0 chrIX 285488 . C A 2922 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.38;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2955,333,0 chrIX 285554 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.568;QD=21.50;ReadPosRankSum=1.709;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3215,378,0 chrIX 285587 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=131;Dels=0.00;FS=5.658;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.669;QD=22.60;ReadPosRankSum=2.870;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2994,348,0 chrIX 285783 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3382;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.15;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2120,249,0 chrIX 285809 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=15.89;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2067,243,0 chrIX 285890 . T G 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.936;DP=137;Dels=0.00;FS=247.512;HaplotypeScore=14.0471;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=-0.411;QD=0.53;ReadPosRankSum=-3.081;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,42:137:99:103,0,1594 chrIX 286178 . C T 4845.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.9176;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.25;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,224:228:99:4845,543,0 chrIX 286202 . C T 5225.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.65;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5225,609,0 chrIX 286346 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.9347;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.32;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4004,462,0 chrIX 286375 . A G 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.4725;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.228;QD=20.26;ReadPosRankSum=1.702;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4640,531,0 chrIX 286810 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.94;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3335,372,0 chrIX 286869 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.43;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2814,312,0 chrIX 287384 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.86;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2283,261,0 chrIX 287429 . A G 2655 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.24;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2688,306,0 chrIX 287904 . T C 2228 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.84;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2261,258,0 chrIX 288084 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.6752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4019,456,0 chrIX 288210 . C G 2732 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2765,324,0 chrIX 288825 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.23;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1821,219,0 chrIX 289119 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.20;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2659,300,0 chrIX 289127 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.71;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2704,300,0 chrIX 289162 . T A 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.179;QD=20.47;ReadPosRankSum=1.684;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2980,339,0 chrIX 289300 . C A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.12;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3491,393,0 chrIX 289409 . G A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.05;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4080,459,0 chrIX 289433 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.02;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3427,402,0 chrIX 290108 . G C 4024.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6638;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.87;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4024,465,0 chrIX 290536 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.34;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3463,399,0 chrIX 290653 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.2918;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.301;QD=18.48;ReadPosRankSum=1.682;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2602,303,0 chrIX 290668 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.18;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2677,312,0 chrIX 290902 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.3132;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.91;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4010,453,0 chrIX 291187 . T A 4755.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.08;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4755,543,0 chrIX 291676 . T C 3047 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3080,357,0 chrIX 291981 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8746;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.20;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2542,297,0 chrIX 292307 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.15;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2254,255,0 chrIX 292353 . A C 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=4.603;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.635;QD=19.32;ReadPosRankSum=1.698;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1984,237,0 chrIX 292364 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=2.607;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-1.671;QD=16.97;ReadPosRankSum=2.374;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1696,198,0 chrIX 292383 . G T 1780 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.16;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1813,207,0 chrIX 292455 . A C 2329 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.48;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2362,270,0 chrIX 292456 . A T 2291 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.18;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2324,267,0 chrIX 292509 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.21;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2473,285,0 chrIX 292764 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1093;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.68;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3578,411,0 chrIX 292870 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.122;DP=173;Dels=0.00;FS=5.260;HaplotypeScore=13.4213;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.118;QD=19.84;ReadPosRankSum=3.327;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:4,167:173:99:3432,399,0 chrIX 292989 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.30;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3682,408,0 chrIX 293043 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.493;QD=22.89;ReadPosRankSum=1.708;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3342,384,0 chrIX 293199 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=116;Dels=0.00;FS=2.598;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.262;QD=19.75;ReadPosRankSum=2.365;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2324,270,0 chrIX 293206 . G A 2352 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.93;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2385,267,0 chrIX 293845 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.94;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2295,255,0 chrIX 293922 . T C 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.01;FS=3.896;HaplotypeScore=16.7865;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.219;QD=19.30;ReadPosRankSum=1.598;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2040,240,0 chrIX 294090 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.58;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2509,279,0 chrIX 294133 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.04;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2291,255,0 chrIX 294393 . A C 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=76;Dels=0.00;FS=2.693;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.550;QD=20.80;ReadPosRankSum=2.383;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:2,72:76:99:1614,189,0 chrIX 295371 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.56;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2850,336,0 chrIX 295588 . A G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.711;QD=22.09;ReadPosRankSum=2.386;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2617,300,0 chrIX 295914 . T C 494 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.48;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:527,63,0 chrIX 295934 . T C 661 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.32;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:81:694,81,0 chrIX 296155 . T C 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.631;QD=22.16;ReadPosRankSum=1.678;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2892,336,0 chrIX 296275 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.377;QD=21.93;ReadPosRankSum=1.665;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3421,399,0 chrIX 296453 . T A 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.0554;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.838;QD=21.33;ReadPosRankSum=1.710;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3327,378,0 chrIX 296620 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.03;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3250,372,0 chrIX 297148 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.34;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3596,405,0 chrIX 297175 . T C 3662.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.06;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3662,420,0 chrIX 297457 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.707;QD=21.61;ReadPosRankSum=1.707;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2993,351,0 chrIX 297565 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.686;QD=22.20;ReadPosRankSum=1.686;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3374,390,0 chrIX 297643 . A G 3155 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.72;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3188,363,0 chrIX 297865 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=4.982;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.311;QD=22.36;ReadPosRankSum=1.709;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3309,387,0 chrIX 297934 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.95;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3999,468,0 chrIX 298219 . C T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.33;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4399,510,0 chrIX 298405 . C T 3886.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.83;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3886,456,0 chrIX 298460 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.45;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3456,405,0 chrIX 298465 . C A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.63;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3612,405,0 chrIX 298687 . G A 5132.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.6302;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.33;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5132,582,0 chrIX 298867 . G A 6537.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.86;SB=-3.638e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:6537,726,0 chrIX 299044 . T G 3388.01 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.8318;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=15.76;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:3388,402,0 chrIX 299047 . G A 3626.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=0.056;QD=16.79;ReadPosRankSum=1.039;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:3626,408,0 chrIX 299053 . A T 3395.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.4261;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.088;QD=16.24;ReadPosRankSum=2.403;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:3395,396,0 chrIX 299287 . T A 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=139;Dels=0.00;FS=7.194;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.734;QD=20.53;ReadPosRankSum=2.379;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2886,321,0 chrIX 299647 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.61;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2904,321,0 chrIX 299757 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.08;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2815,318,0 chrIX 299898 . T G 600.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.974;DP=148;Dels=0.00;FS=322.169;HaplotypeScore=9.6649;MLEAC=1;MLEAF=0.500;MQ=56.80;MQ0=0;MQRankSum=-2.431;QD=4.05;ReadPosRankSum=-8.533;SB=-3.010e+00 GT:AD:DP:GQ:PL 0/1:83,65:148:99:630,0,1279 chrIX 300056 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.57;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2666,297,0 chrIX 300196 . T A 1503 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.52;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1536,171,0 chrIX 300468 . A T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=32.8613;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.59;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,40:40:6:55,6,0 chrIX 300472 . T C 92.26 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=31.8948;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.25;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:15:125,15,0 chrIX 300475 . T G 100.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=1.648;QD=2.45;ReadPosRankSum=1.564;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,40:41:15:133,15,0 chrIX 300482 . G A 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=3.23;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,41:43:21:172,21,0 chrIX 300483 . G T 148.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;MQRankSum=-2.231;QD=3.29;ReadPosRankSum=2.120;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:2,43:45:21:181,21,0 chrIX 300494 . A T 102.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;DP=56;Dels=0.00;FS=26.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.18;MQ0=0;MQRankSum=1.492;QD=1.82;ReadPosRankSum=-1.516;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:47,8:55:99:132,0,187 chrIX 300505 . G C 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;DP=66;Dels=0.00;FS=38.259;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=29.29;MQ0=0;MQRankSum=-1.459;QD=1.82;ReadPosRankSum=2.230;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,45:66:99:150,0,311 chrIX 300511 . C A 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.559;DP=67;Dels=0.00;FS=43.096;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=0;MQRankSum=-2.330;QD=1.57;ReadPosRankSum=1.622;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,45:67:99:135,0,457 chrIX 300519 . C T 775 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=11.57;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:90:808,90,0 chrIX 300524 . T A 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;DP=68;Dels=0.00;FS=35.106;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=-1.540;QD=1.99;ReadPosRankSum=-0.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,46:68:99:165,0,451 chrIX 300532 . T A 254.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;DP=79;Dels=0.00;FS=17.593;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=0;MQRankSum=-0.640;QD=3.22;ReadPosRankSum=-3.462;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:22,57:79:99:284,0,440 chrIX 300536 . T C 454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.093;DP=86;Dels=0.00;FS=12.029;HaplotypeScore=127.5791;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;MQRankSum=-2.244;QD=5.28;ReadPosRankSum=-3.942;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:23,63:86:57:487,57,0 chrIX 300591 . C A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.032;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=0;MQRankSum=-1.807;QD=0.33;ReadPosRankSum=-5.464;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,15:111:67:67,0,1462 chrIX 300688 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.198;DP=104;Dels=0.00;FS=31.141;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;MQRankSum=2.716;QD=18.25;ReadPosRankSum=4.725;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:11,93:104:99:1931,225,0 chrIX 300887 . G C 2222 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2255,261,0 chrIX 301019 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2645,297,0 chrIX 301460 . T C 2213 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2246,258,0 chrIX 301594 . T A 2941 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.98;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2974,342,0 chrIX 301695 . T A 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.688;QD=22.94;ReadPosRankSum=1.577;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3579,402,0 chrIX 301761 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.98;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3470,390,0 chrIX 301894 . C T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.6923;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.25;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4539,513,0 chrIX 301961 . A G 5062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=234;Dels=0.00;FS=10.652;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.296;QD=21.63;ReadPosRankSum=2.418;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5062,599,0 chrIX 301970 . T A 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.547;QD=20.07;ReadPosRankSum=2.386;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4636,548,0 chrIX 302140 . C T 6776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=312;Dels=0.00;FS=3.592;HaplotypeScore=16.0997;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.340;QD=21.72;ReadPosRankSum=0.117;SB=-3.290e+03 GT:AD:DP:GQ:PL 1/1:1,310:312:99:6776,794,0 chrIX 302223 . C T 5991.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=22.7306;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.11;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:5991,663,0 chrIX 302272 . G C 5550.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=9.8496;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.18;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5550,656,0 chrIX 302298 . A C 5352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.386;QD=21.15;ReadPosRankSum=1.690;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:1,249:253:99:5352,627,0 chrIX 302362 . T A 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.614;DP=247;Dels=0.00;FS=16.237;HaplotypeScore=14.2187;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.503;QD=18.50;ReadPosRankSum=3.759;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:5,242:247:99:4569,528,0 chrIX 302380 . A G 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=257;Dels=0.00;FS=3.513;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.677;QD=18.89;ReadPosRankSum=1.691;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:4854,561,0 chrIX 302411 . A T 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=265;Dels=0.00;FS=4.674;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.669;QD=17.94;ReadPosRankSum=1.706;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:4753,558,0 chrIX 302472 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.7128;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.804;QD=15.56;ReadPosRankSum=1.718;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:3720,423,0 chrIX 302529 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.7284;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.09;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4123,474,0 chrIX 302716 . A T 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=212;Dels=0.00;FS=5.790;HaplotypeScore=5.4857;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-1.213;QD=22.28;ReadPosRankSum=2.901;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:4724,537,0 chrIX 302793 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.3444;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;MQRankSum=-1.551;QD=20.18;ReadPosRankSum=1.650;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4257,501,0 chrIX 302816 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=20.05;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4110,480,0 chrIX 302826 . C T 4008.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=19.65;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4008,444,0 chrIX 302829 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=19.82;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3925,438,0 chrIX 302871 . T G 2702 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=16.78;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2735,318,0 chrIX 302892 . A T 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=2.748;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;MQRankSum=-1.823;QD=15.46;ReadPosRankSum=2.417;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2336,279,0 chrIX 302911 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=136;Dels=0.00;FS=7.943;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;MQRankSum=-2.156;QD=14.23;ReadPosRankSum=2.413;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:1968,225,0 chrIX 302918 . G C 1913 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=14.38;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:1946,228,0 chrIX 302935 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=14.97;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2218,258,0 chrIX 302964 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=13.48;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2243,267,0 chrIX 302974 . G C 2189 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3140;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=13.60;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2222,258,0 chrIX 303001 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=16.13;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:2711,312,0 chrIX 303056 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=173;Dels=0.00;FS=2.886;HaplotypeScore=14.2734;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.435;QD=23.17;ReadPosRankSum=-0.236;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4009,430,0 chrIX 303153 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=3.024;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=0.454;QD=22.20;ReadPosRankSum=2.400;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3308,384,0 chrIX 303281 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0691;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.158;QD=21.06;ReadPosRankSum=0.359;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3559,420,0 chrIX 303308 . G C 3127 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.13;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3160,366,0 chrIX 303350 . A T 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=129;Dels=0.00;FS=5.322;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.617;QD=19.51;ReadPosRankSum=2.758;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2550,288,0 chrIX 303361 . A G 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=116;Dels=0.00;FS=5.505;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.452;QD=18.68;ReadPosRankSum=2.940;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2200,267,0 chrIX 303402 . G C 1875 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.75;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1908,225,0 chrIX 303435 . A G 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.736;QD=22.44;ReadPosRankSum=1.685;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1671,192,0 chrIX 303489 . T C 865 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=17.30;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:898,108,0 chrIX 303512 . A G 535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;MQRankSum=-1.427;QD=15.74;ReadPosRankSum=1.631;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:66:568,66,0 chrIX 304231 . C G 2335 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.12;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2368,276,0 chrIX 304320 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9929;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.81;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2628,291,0 chrIX 304371 . C G 2651 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1709;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.28;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2684,312,0 chrIX 304393 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.36;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2560,300,0 chrIX 305089 . T C 2856 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.22;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2889,333,0 chrIX 305101 . T G 2724 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.89;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2757,315,0 chrIX 305240 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.96;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2968,333,0 chrIX 305620 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.48;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1674,195,0 chrIX 305776 . T C 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.815;QD=23.44;ReadPosRankSum=2.374;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2307,267,0 chrIX 306037 . C A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.34;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3755,435,0 chrIX 306076 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.2401;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.18;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3587,411,0 chrIX 306340 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=142;Dels=0.00;FS=5.899;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.144;QD=19.10;ReadPosRankSum=2.907;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:2745,324,0 chrIX 306523 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=7.006;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.280;QD=22.10;ReadPosRankSum=2.331;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3238,378,0 chrIX 306550 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.621;QD=21.83;ReadPosRankSum=1.706;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2915,342,0 chrIX 307104 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.67;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2079,237,0 chrIX 307120 . A G 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.231;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.423;QD=18.45;ReadPosRankSum=1.664;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1896,219,0 chrIX 307171 . T C 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=3.726;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.178;QD=20.33;ReadPosRankSum=1.704;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2574,297,0 chrIX 307231 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.90;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2595,297,0 chrIX 307366 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.28;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1605,186,0 chrIX 307639 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.34;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3998,450,0 chrIX 307735 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.92;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4561,501,0 chrIX 307741 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.91;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4292,509,0 chrIX 307943 . G A 5225.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=22.7202;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.41;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5225,585,0 chrIX 307976 . A C 4801.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=21.53;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4801,552,0 chrIX 308167 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=17.36;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2672,309,0 chrIX 308179 . T C 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=159;Dels=0.00;FS=4.205;HaplotypeScore=3.7288;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;MQRankSum=-0.395;QD=16.58;ReadPosRankSum=1.666;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2670,312,0 chrIX 308198 . C T 2341 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=15.10;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2374,267,0 chrIX 308199 . T C 2291 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=4.663;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;MQRankSum=-0.855;QD=14.50;ReadPosRankSum=1.688;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2324,270,0 chrIX 308203 . A G 2312 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=2.606;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;MQRankSum=0.402;QD=14.27;ReadPosRankSum=2.328;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:2345,276,0 chrIX 308333 . C A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.47;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3249,363,0 chrIX 308369 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=20.77;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2006,228,0 chrIX 308383 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=20.42;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1687,198,0 chrIX 309221 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=181;Dels=0.00;FS=10.942;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.233;QD=20.98;ReadPosRankSum=2.949;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:3,174:181:99:3797,447,0 chrIX 309437 . T G 5363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=19.5214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.884;QD=22.16;ReadPosRankSum=1.718;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5363,641,0 chrIX 309886 . C T 6874.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=35.0631;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.22;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,321:324:99:6874,774,0 chrIX 310160 . T C 4212.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.2581;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.49;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4212,486,0 chrIX 310171 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=19.60;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3665,423,0 chrIX 310223 . A G 3374.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-0.126;QD=17.57;ReadPosRankSum=1.714;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3374,396,0 chrIX 310226 . G A 3493.01 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.91;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3493,399,0 chrIX 310232 . G A 3191 SnpCluster AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.44;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3224,369,0 chrIX 310412 . G C 2468 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=21.28;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2501,291,0 chrIX 310533 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9655;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.00;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1653,189,0 chrIX 310668 . T C 1119 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=19.29;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1152,132,0 chrIX 310732 . T G 746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=62;Dels=0.00;FS=3.945;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;MQRankSum=-0.391;QD=12.03;ReadPosRankSum=0.559;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:90:779,90,0 chrIX 310769 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=16.53;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1091,126,0 chrIX 310807 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.46;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1404,159,0 chrIX 310816 . A T 1412 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.34;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1445,168,0 chrIX 310874 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=20.58;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1947,225,0 chrIX 311139 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.74;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3914,467,0 chrIX 311143 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.9409;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.32;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4094,474,0 chrIX 311953 . T G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.09;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3601,414,0 chrIX 312013 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1970;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.86;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3137,363,0 chrIX 312034 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8024;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.67;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3088,360,0 chrIX 312220 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.27;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4105,483,0 chrIX 312463 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=15.60;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2217,261,0 chrIX 312474 . A G 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=146;Dels=0.00;FS=3.036;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-1.299;QD=15.95;ReadPosRankSum=2.397;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,139:146:99:2361,279,0 chrIX 312591 . A T 3152 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.68;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3185,366,0 chrIX 312824 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.72;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3862,438,0 chrIX 312845 . T A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.78;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3532,396,0 chrIX 312859 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.72;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3103,357,0 chrIX 313552 . T C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.275;DP=144;Dels=0.00;FS=9.787;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.528;QD=19.88;ReadPosRankSum=1.796;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2896,325,0 chrIX 313898 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.4548;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.82;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3732,426,0 chrIX 314131 . T C 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.6887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.935;QD=22.49;ReadPosRankSum=1.663;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2282,264,0 chrIX 314242 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.0451;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.81;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2988,354,0 chrIX 314338 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.90;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2625,312,0 chrIX 314742 . T C 4478.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4478,516,0 chrIX 314870 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.268;QD=22.25;ReadPosRankSum=1.713;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3983,459,0 chrIX 315075 . C G 2044 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6043;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=14.10;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2077,240,0 chrIX 315079 . A G 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=146;Dels=0.00;FS=2.636;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.398;QD=12.83;ReadPosRankSum=1.280;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:1906,225,0 chrIX 315261 . C G 2826 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.98;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2859,336,0 chrIX 315368 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=4.248;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.012;QD=21.38;ReadPosRankSum=1.677;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2705,315,0 chrIX 315641 . T C 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=2.330;QD=23.88;ReadPosRankSum=2.405;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3916,453,0 chrIX 315674 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.07;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3415,396,0 chrIX 315806 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=205;Dels=0.00;FS=10.390;HaplotypeScore=15.6875;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.599;QD=21.80;ReadPosRankSum=2.956;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4470,519,0 chrIX 316019 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.813;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.605;QD=20.28;ReadPosRankSum=1.711;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3366,390,0 chrIX 316025 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.33;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3262,387,0 chrIX 316046 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.588;QD=19.65;ReadPosRankSum=1.670;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3301,381,0 chrIX 316163 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=140;Dels=0.00;FS=2.581;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.616;QD=19.58;ReadPosRankSum=2.950;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:2774,327,0 chrIX 316167 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.50;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2862,333,0 chrIX 316207 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.18;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2124,249,0 chrIX 316233 . T C 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=75;Dels=0.00;FS=4.890;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;MQRankSum=0.234;QD=17.29;ReadPosRankSum=1.685;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1330,153,0 chrIX 316244 . A T 1527 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=18.40;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1560,177,0 chrIX 316301 . A G 1904 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=20.70;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1937,222,0 chrIX 316311 . T C 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=3.048;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=0.239;QD=19.44;ReadPosRankSum=2.299;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1938,222,0 chrIX 316329 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.02;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2049,231,0 chrIX 316440 . T C 1465 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=19.28;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1498,180,0 chrIX 316441 . C T 1506 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=19.56;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1539,180,0 chrIX 316450 . C T 1442 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=17.80;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1475,177,0 chrIX 316460 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=17.03;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1617,186,0 chrIX 316498 . A G 2087 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.80;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2120,249,0 chrIX 316546 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.56;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2707,312,0 chrIX 316632 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.49;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1904,228,0 chrIX 316645 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=17.93;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1718,201,0 chrIX 316715 . A T 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=3.022;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.930;QD=22.20;ReadPosRankSum=2.290;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2764,312,0 chrIX 316868 . C A 2560 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.81;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2593,300,0 chrIX 316874 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.27;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2546,291,0 chrIX 316929 . G C 2340 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.50;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2373,273,0 chrIX 316998 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.71;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2595,297,0 chrIX 317056 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.62;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2713,321,0 chrIX 317124 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=116;Dels=0.00;FS=6.366;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.011;QD=20.55;ReadPosRankSum=2.407;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2417,279,0 chrIX 317145 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.67;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2472,279,0 chrIX 317443 . A G 5637.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=283;Dels=0.00;FS=2.951;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=6;MQRankSum=0.640;QD=19.92;ReadPosRankSum=2.432;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:2,275:283:99:5637,657,0 chrIX 318288 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.40;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3296,369,0 chrIX 318694 . T A 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=198;Dels=0.00;FS=11.420;HaplotypeScore=17.4640;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.249;QD=19.47;ReadPosRankSum=2.944;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:3856,450,0 chrIX 318836 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.8131;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.45;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2993,336,0 chrIX 319121 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.40;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2116,234,0 chrIX 319209 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3306,381,0 chrIX 319586 . A T 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=3.708;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.576;QD=20.26;ReadPosRankSum=1.598;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3174,363,0 chrIX 320609 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=3.893;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.873;QD=22.02;ReadPosRankSum=1.704;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2786,321,0 chrIX 321095 . T A 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=3.554;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.707;QD=21.70;ReadPosRankSum=1.656;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2984,342,0 chrIX 321122 . T G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=136;Dels=0.00;FS=3.019;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.248;QD=22.20;ReadPosRankSum=2.413;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:3052,351,0 chrIX 321251 . C A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.3212;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.13;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3596,402,0 chrIX 321313 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=2.947;HaplotypeScore=12.7376;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.641;QD=22.60;ReadPosRankSum=2.388;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3594,417,0 chrIX 321359 . G A 4522.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.4908;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.93;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4522,504,0 chrIX 321421 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.70;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3667,414,0 chrIX 321426 . A T 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.421;QD=21.13;ReadPosRankSum=-0.866;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3318,356,0 chrIX 321657 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.81;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4013,471,0 chrIX 322076 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3339,396,0 chrIX 322202 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.643;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.145;QD=21.63;ReadPosRankSum=1.687;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3353,387,0 chrIX 322368 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3804,441,0 chrIX 322620 . T C 5303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=248;Dels=0.00;FS=3.715;HaplotypeScore=20.7243;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.578;QD=21.38;ReadPosRankSum=1.718;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5303,615,0 chrIX 323371 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.5426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2653,294,0 chrIX 323497 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.95;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2838,324,0 chrIX 323610 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.801;QD=21.77;ReadPosRankSum=1.667;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3505,417,0 chrIX 323652 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3196,366,0 chrIX 324397 . A T 1773 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=23.03;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1806,201,0 chrIX 324408 . C G 1656 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=21.23;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1689,195,0 chrIX 324521 . A C 1374 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=1;QD=21.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1407,162,0 chrIX 324685 . T A 49.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=9.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:82,9,0 chrIX 324872 . A C 379 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=18.05;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:48:412,48,0 chrIX 325062 . T A 357 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=11.90;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:42:390,42,0 chrIX 325063 . G A 355 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=12.24;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:388,42,0 chrIX 325080 . T C 146.06 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=6.09;SB=-1.791e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:179,21,0 chrIX 325081 . C T 152.06 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=6.34;SB=-1.781e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:185,21,0 chrIX 325090 . C T 234 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=0;QD=7.09;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:30:267,30,0 chrIX 325098 . A C 287 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=26.8450;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;QD=7.97;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:36:320,36,0 chrIX 325112 . A C 328 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=7.81;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:42:361,42,0 chrIX 325117 . T C 411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;MQRankSum=-1.525;QD=8.22;ReadPosRankSum=1.663;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:51:444,51,0 chrIX 325201 . C A 1836 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.63;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1869,210,0 chrIX 325450 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.41;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2912,330,0 chrIX 325723 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.364;QD=22.03;ReadPosRankSum=1.645;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2654,309,0 chrIX 326195 . C G 2859 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2892,345,0 chrIX 326249 . A G 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.930;HaplotypeScore=11.2938;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.807;QD=21.44;ReadPosRankSum=1.706;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2863,342,0 chrIX 326329 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.6898;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.51;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3902,435,0 chrIX 326411 . G T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3591,420,0 chrIX 326540 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=149;Dels=0.00;FS=2.776;HaplotypeScore=8.2019;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.256;QD=19.77;ReadPosRankSum=2.301;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2979,345,0 chrIX 326543 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.6949;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.814;QD=19.23;ReadPosRankSum=1.640;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:2994,348,0 chrIX 326669 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.18;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3185,360,0 chrIX 326724 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.45;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2869,321,0 chrIX 327320 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.63;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3322,375,0 chrIX 327455 . A C 4232.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.91;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4232,489,0 chrIX 328214 . C G 2651 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.25;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2684,309,0 chrIX 328243 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.78;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2625,312,0 chrIX 329599 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.0270;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.56;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3609,405,0 chrIX 329893 . T C 2887 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2920,339,0 chrIX 331018 . C G 2420 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.04;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2453,297,0 chrIX 331210 . A G 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=4.249;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-0.651;QD=17.21;ReadPosRankSum=1.658;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2459,294,0 chrIX 331213 . T G 2304 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.94;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2337,273,0 chrIX 331255 . A G 2457 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=15.45;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2490,288,0 chrIX 331270 . A G 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=166;Dels=0.00;FS=8.459;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-0.910;QD=14.36;ReadPosRankSum=2.405;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:2416,285,0 chrIX 332459 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.89;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2397,267,0 chrIX 333073 . A C 4128.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.17;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4128,480,0 chrIX 333302 . G A 4644.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.70;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4644,528,0 chrIX 333345 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=197;Dels=0.00;FS=3.123;HaplotypeScore=11.0588;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.554;QD=21.16;ReadPosRankSum=0.577;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4168,486,0 chrIX 333628 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.75;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2285,258,0 chrIX 334050 . C T 5746.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.2697;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=21.93;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5746,654,0 chrIX 334096 . A T 4882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=21.6503;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.751;QD=21.60;ReadPosRankSum=1.594;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4882,546,0 chrIX 334167 . A T 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=147;Dels=0.00;FS=2.915;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;MQRankSum=-1.931;QD=16.92;ReadPosRankSum=2.399;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2520,291,0 chrIX 334188 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;QD=14.14;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1249,150,0 chrIX 334200 . A T 738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=54;Dels=0.00;FS=5.394;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;MQRankSum=-2.692;QD=13.67;ReadPosRankSum=3.286;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:4,50:54:90:771,90,0 chrIX 334233 . A T 865 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0989;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=0;MQRankSum=-1.563;QD=10.55;ReadPosRankSum=1.690;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:898,108,0 chrIX 334239 . T C 264.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.242;DP=108;Dels=0.00;FS=9.377;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=32.49;MQ0=0;MQRankSum=-0.703;QD=2.44;ReadPosRankSum=-2.373;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:64,44:108:99:294,0,636 chrIX 334242 . T C 268.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;DP=112;Dels=0.00;FS=9.402;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=32.37;MQ0=0;MQRankSum=0.128;QD=2.39;ReadPosRankSum=-1.647;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:68,44:112:99:298,0,670 chrIX 334245 . C T 1318 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;DP=115;Dels=0.00;FS=4.075;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;MQRankSum=-0.919;QD=11.46;ReadPosRankSum=1.220;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1351,153,0 chrIX 334254 . A C,T 1150.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.95;MQ0=0;QD=8.91;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/2:0,85,44:129:99:1210,376,262,834,0,783 chrIX 334275 . C G 140.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DP=140;Dels=0.04;FS=11.676;HaplotypeScore=33.4388;MLEAC=1;MLEAF=0.500;MQ=34.41;MQ0=0;MQRankSum=0.378;QD=1.00;ReadPosRankSum=7.726;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:87,47:134:99:170,0,835 chrIX 334314 . C T 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;DP=235;Dels=0.00;FS=8.256;HaplotypeScore=23.5597;MLEAC=1;MLEAF=0.500;MQ=31.03;MQ0=0;MQRankSum=0.286;QD=0.36;ReadPosRankSum=-4.464;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,36:235:99:114,0,1325 chrIX 334360 . T G 655.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.898;DP=159;Dels=0.00;FS=18.763;HaplotypeScore=28.4377;MLEAC=1;MLEAF=0.500;MQ=31.91;MQ0=0;MQRankSum=1.872;QD=4.12;ReadPosRankSum=-6.367;SB=-8.970e+02 GT:AD:DP:GQ:PL 0/1:66,93:159:99:685,0,173 chrIX 334503 . C A 2321 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6696;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=18.87;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2354,273,0 chrIX 334696 . T C 1481 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.78;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1514,177,0 chrIX 334734 . C A 1079 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=14.2877;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.62;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1112,120,0 chrIX 334775 . G A 101.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=68;Dels=0.01;FS=7.993;HaplotypeScore=45.6986;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-0.792;QD=1.49;ReadPosRankSum=1.713;SB=-6.443e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:15:134,15,0 chrIX 334815 . T C 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=120;Dels=0.01;FS=3.027;HaplotypeScore=17.4181;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.198;QD=18.26;ReadPosRankSum=2.366;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2224,258,0 chrIX 334919 . T C 2875 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.57;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2908,339,0 chrIX 335001 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.94;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2672,303,0 chrIX 335022 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=3.006;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.711;QD=17.51;ReadPosRankSum=2.416;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2625,303,0 chrIX 335035 . C A 2862 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=16.54;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2895,333,0 chrIX 335048 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.38;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3214,366,0 chrIX 335581 . A T 2195 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.95;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2228,249,0 chrIX 335817 . T C 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=140;Dels=0.00;FS=3.009;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.325;QD=21.55;ReadPosRankSum=2.397;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3050,354,0 chrIX 335838 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7474;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.50;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3193,357,0 chrIX 336197 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.5070;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.05;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2599,291,0 chrIX 336214 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.12;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2193,252,0 chrIX 336223 . T C 2083 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.65;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2116,240,0 chrIX 336289 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.03;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1205,141,0 chrIX 336423 . T G 555 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=15.00;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:69:588,69,0 chrIX 336449 . G A 409 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=12.03;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:51:442,51,0 chrIX 336519 . C G 1624 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.25;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1657,189,0 chrIX 336624 . T C 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=0.503;QD=18.06;ReadPosRankSum=1.676;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1153,135,0 chrIX 336672 . A G 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.659;DP=81;Dels=0.00;FS=3.059;HaplotypeScore=70.2235;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-1.080;QD=13.51;ReadPosRankSum=2.389;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:90:1127,90,0 chrIX 336673 . A G 1149 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=70.2235;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=14.19;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1182,138,0 chrIX 336731 . T C 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=106;Dels=0.00;FS=12.782;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.164;QD=18.51;ReadPosRankSum=2.914;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:3,102:106:99:1995,231,0 chrIX 337083 . A T 2569 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=23.35;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2602,294,0 chrIX 337111 . T A 2251 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.51;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2284,261,0 chrIX 337219 . T G 3200 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=138.8129;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=20.65;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3233,372,0 chrIX 337321 . C A 1743 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.97;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,92:96:99:1776,207,0 chrIX 337352 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=142;Dels=0.01;FS=4.618;HaplotypeScore=13.7166;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.636;QD=19.62;ReadPosRankSum=1.707;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2819,333,0 chrIX 337478 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.51;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3174,375,0 chrIX 337505 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.10;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3603,423,0 chrIX 337589 . C A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.50;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4079,447,0 chrIX 337590 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.61;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3902,447,0 chrIX 337621 . C A 4532.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.23;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4532,513,0 chrIX 337673 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=3.288;HaplotypeScore=13.0051;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.929;QD=22.57;ReadPosRankSum=1.714;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4378,507,0 chrIX 337721 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.012;QD=22.58;ReadPosRankSum=1.713;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4041,468,0 chrIX 337799 . C G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.56;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3723,429,0 chrIX 337914 . A T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=23.48;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3499,405,0 chrIX 337948 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4177;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=1.026;QD=22.69;ReadPosRankSum=1.710;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3563,414,0 chrIX 338050 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=18.94;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2723,315,0 chrIX 338145 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=15.92;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2659,297,0 chrIX 338465 . A G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=103;Dels=0.00;FS=2.669;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.589;QD=21.36;ReadPosRankSum=2.402;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2233,255,0 chrIX 338670 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.96;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2234,249,0 chrIX 339115 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2106,240,0 chrIX 339305 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3981,447,0 chrIX 340507 . G T 3182 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.65;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3215,372,0 chrIX 340858 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.13;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2632,300,0 chrIX 341514 . T G 1708 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.09;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1741,201,0 chrIX 341515 . G C 1696 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.95;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1729,201,0 chrIX 341595 . C A 1211 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.85;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1244,144,0 chrIX 341662 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.83;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2156,243,0 chrIX 341686 . T C 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.364;QD=20.31;ReadPosRankSum=2.374;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2044,237,0 chrIX 341700 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9562;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.45;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2285,255,0 chrIX 341777 . A C 1879 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.91;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1912,225,0 chrIX 341828 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.55;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1677,192,0 chrIX 341838 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.26;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2079,240,0 chrIX 341987 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.45;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2049,234,0 chrIX 342151 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2123,234,0 chrIX 342194 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1684,198,0 chrIX 342264 . T G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=91;Dels=0.00;FS=2.869;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.394;QD=20.21;ReadPosRankSum=2.342;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1872,222,0 chrIX 342462 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.61;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2583,294,0 chrIX 342976 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.220;QD=22.09;ReadPosRankSum=2.415;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3147,363,0 chrIX 343172 . T C 4604.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.37;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4604,531,0 chrIX 343174 . A G 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=3.459;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.170;QD=20.03;ReadPosRankSum=1.701;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4487,519,0 chrIX 343775 . A T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.80;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4522,510,0 chrIX 343874 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=180;Dels=0.00;FS=15.930;HaplotypeScore=12.7475;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.311;QD=21.79;ReadPosRankSum=3.760;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:5,174:180:99:3922,453,0 chrIX 344094 . C T 5918.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.5138;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.00;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5918,675,0 chrIX 344292 . T G 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=233;Dels=0.00;FS=4.927;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.717;QD=19.98;ReadPosRankSum=1.717;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,226:233:99:4655,543,0 chrIX 344337 . T C 4499.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.2715;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.39;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,227:232:99:4499,528,0 chrIX 344547 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.25;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3007,345,0 chrIX 344556 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.99;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3015,339,0 chrIX 344691 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.07;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3434,390,0 chrIX 344740 . C A 4146.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.3702;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.15;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4146,456,0 chrIX 344826 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=200;Dels=0.00;FS=5.868;HaplotypeScore=15.3854;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.231;QD=20.21;ReadPosRankSum=2.945;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4041,474,0 chrIX 344902 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1032;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.064;QD=22.30;ReadPosRankSum=1.689;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3612,405,0 chrIX 345129 . G C 3307.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.50;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3307,384,0 chrIX 345192 . A C 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.9661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.884;QD=22.21;ReadPosRankSum=-0.763;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3254,381,0 chrIX 345247 . A C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.93;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3391,402,0 chrIX 345656 . A C 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1411;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.485;QD=20.43;ReadPosRankSum=1.670;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2342,273,0 chrIX 345745 . T C 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.170;QD=19.74;ReadPosRankSum=1.685;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2975,345,0 chrIX 345871 . T C 3046 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.43;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3079,357,0 chrIX 345992 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2737;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.94;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3389,407,0 chrIX 346155 . A T 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=187;Dels=0.00;FS=3.176;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.102;QD=22.11;ReadPosRankSum=1.714;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4135,477,0 chrIX 346766 . A C 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=3.718;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.782;QD=21.47;ReadPosRankSum=1.701;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2481,288,0 chrIX 346859 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.3260;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2036,234,0 chrIX 346999 . C G 2897 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.99;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2930,345,0 chrIX 347039 . A T 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=3.226;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.028;QD=23.16;ReadPosRankSum=1.704;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2905,324,0 chrIX 347117 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3527,405,0 chrIX 347165 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.131;QD=22.68;ReadPosRankSum=1.703;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2777,321,0 chrIX 347270 . A T 2572 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2605,291,0 chrIX 347647 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.65;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2285,267,0 chrIX 347702 . A G 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=154;Dels=0.00;FS=2.579;HaplotypeScore=8.9479;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.007;QD=22.71;ReadPosRankSum=2.955;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3497,402,0 chrIX 348431 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.81;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3912,450,0 chrIX 348634 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3072,354,0 chrIX 348722 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=3.035;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.055;QD=20.02;ReadPosRankSum=1.713;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3623,417,0 chrIX 348726 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.89;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3540,396,0 chrIX 348958 . T C 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.4241;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.080;QD=21.92;ReadPosRankSum=1.714;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4275,495,0 chrIX 349855 . T G 2452 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.5946;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.32;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2485,285,0 chrIX 349907 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.31;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2697,318,0 chrIX 349959 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=17.42;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2211,258,0 chrIX 349963 . T A 2160 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=18.00;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2193,246,0 chrIX 350005 . A G 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=3.061;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;MQRankSum=-1.666;QD=11.61;ReadPosRankSum=2.366;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1055,123,0 chrIX 350021 . G A 1027 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=55.9909;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=11.94;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1060,120,0 chrIX 350044 . T C 902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=78;Dels=0.00;FS=6.782;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;MQRankSum=-1.344;QD=11.56;ReadPosRankSum=2.387;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:935,111,0 chrIX 350094 . A T 2021 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.21;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2054,240,0 chrIX 350135 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.097;QD=22.60;ReadPosRankSum=1.706;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2993,351,0 chrIX 350183 . T A 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=3.590;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=0.495;QD=20.79;ReadPosRankSum=1.639;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2362,273,0 chrIX 350189 . G C 2140 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=20.78;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2173,258,0 chrIX 350262 . C A 1815 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.11;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1848,216,0 chrIX 350470 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.85;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1503,171,0 chrIX 350705 . C G 1577 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.71;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1610,189,0 chrIX 350729 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.88;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1787,210,0 chrIX 351040 . C T 2679 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2712,303,0 chrIX 351362 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.5841;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.48;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2604,297,0 chrIX 351734 . G T 2125 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.24;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2158,255,0 chrIX 351758 . A G 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.757;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.321;QD=18.52;ReadPosRankSum=1.962;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1811,199,0 chrIX 351895 . A G 2787 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.22;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2820,327,0 chrIX 352780 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.39;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3135,366,0 chrIX 352871 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.713;DP=157;Dels=0.00;FS=20.114;HaplotypeScore=12.7403;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.348;QD=22.18;ReadPosRankSum=3.723;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:5,151:157:99:3483,405,0 chrIX 353168 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.93;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4057,482,0 chrIX 353530 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2808,327,0 chrIX 354377 . A C 2709 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.07;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2742,318,0 chrIX 354380 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.649;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.561;QD=18.92;ReadPosRankSum=1.707;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2663,309,0 chrIX 354832 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3051,342,0 chrIX 354945 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.668;QD=22.45;ReadPosRankSum=1.711;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3682,426,0 chrIX 355578 . T G 1044 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1077,126,0 chrIX 355612 . A T 467 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.30;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:60:500,60,0 chrIX 355640 . A C 69.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=11.59;ReadPosRankSum=0.736;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:12:102,12,0 chrIX 355716 . A T 132.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=12.01;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:165,18,0 chrIX 355758 . T C 508 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.17;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:63:541,63,0 chrIX 355908 . T C 857 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.97;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:890,105,0 chrIX 356037 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.33;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2174,240,0 chrIX 356686 . G A 4461.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.24;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4461,525,0 chrIX 356710 . G A 4650.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.6395;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.68;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4650,519,0 chrIX 356958 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.50;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3352,378,0 chrIX 357174 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.06;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2006,225,0 chrIX 357197 . G T 1657 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.71;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1690,201,0 chrIX 357298 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.69;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1523,174,0 chrIX 357540 . T G 2873 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2906,339,0 chrIX 357738 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.50;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3108,360,0 chrIX 357800 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.08;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3644,408,0 chrIX 358029 . C A 2664 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.98;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2697,303,0 chrIX 358033 . T C 2384 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.38;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2417,279,0 chrIX 358276 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.113;DP=132;Dels=0.00;FS=5.275;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.431;QD=19.73;ReadPosRankSum=3.365;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:4,128:132:99:2638,309,0 chrIX 358450 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.80;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3602,423,0 chrIX 358570 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8658;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.62;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2940,339,0 chrIX 358618 . A G 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=180;Dels=0.00;FS=5.664;HaplotypeScore=9.6356;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.152;QD=22.13;ReadPosRankSum=2.927;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:3984,462,0 chrIX 358850 . T C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.00;FS=4.046;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.286;QD=18.59;ReadPosRankSum=1.706;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2506,300,0 chrIX 358894 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.54;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2601,294,0 chrIX 358980 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.82;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2669,312,0 chrIX 359077 . G T 1781 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1814,204,0 chrIX 359494 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.77;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2492,291,0 chrIX 359599 . A G 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=179;Dels=0.00;FS=7.026;HaplotypeScore=7.3840;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.487;QD=21.80;ReadPosRankSum=2.408;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3903,467,0 chrIX 359744 . G T 2964 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.64;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2997,348,0 chrIX 360178 . G A 5582.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.0055;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.26;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5582,636,0 chrIX 360413 . C A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.4301;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.97;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4272,477,0 chrIX 360460 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.25;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3734,417,0 chrIX 360682 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.38;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3154,354,0 chrIX 360722 . T G 3588.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.75;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3588,414,0 chrIX 360876 . G A 4525.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.97;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4525,528,0 chrIX 360955 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.507;QD=20.49;ReadPosRankSum=2.330;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4221,503,0 chrIX 360959 . C T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.60;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4182,483,0 chrIX 361254 . G C 5035.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.3851;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.08;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,222:228:99:5035,591,0 chrIX 361280 . T C 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=214;Dels=0.00;FS=5.554;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.277;QD=21.29;ReadPosRankSum=2.967;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4556,528,0 chrIX 361353 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.64;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3085,351,0 chrIX 361360 . C A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=18.42;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3298,378,0 chrIX 361392 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.3205;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.71;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:4172,483,0 chrIX 361543 . A C 3764.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.30;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3764,444,0 chrIX 361546 . T G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=204;Dels=0.00;FS=6.571;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.788;QD=18.87;ReadPosRankSum=2.341;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:3850,444,0 chrIX 361788 . C A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.0156;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.52;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5089,564,0 chrIX 361957 . G T 4730.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.2618;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.42;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4730,558,0 chrIX 362275 . C A 3920.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.33;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3920,447,0 chrIX 362315 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.93;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2504,282,0 chrIX 362340 . C A 2191 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.89;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2224,255,0 chrIX 362381 . A C 3444.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.22;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3444,402,0 chrIX 362517 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.95;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2819,315,0 chrIX 362523 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3136;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.30;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2887,324,0 chrIX 363445 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=234;Dels=0.00;FS=1.754;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.755;QD=19.92;ReadPosRankSum=4.127;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:6,228:234:99:4662,518,0 chrIX 363457 . C T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.7503;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.80;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4435,516,0 chrIX 363634 . C T 7105.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=5.7175;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=21.93;SB=-4.017e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:7105,801,0 chrIX 363644 . A G 6461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=324;Dels=0.00;FS=3.174;HaplotypeScore=9.4137;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-0.631;QD=19.94;ReadPosRankSum=1.679;SB=-3.888e+03 GT:AD:DP:GQ:PL 1/1:1,323:324:99:6461,747,0 chrIX 363854 . T C 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=5.257;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-0.749;QD=20.25;ReadPosRankSum=1.715;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4212,483,0 chrIX 363863 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=2.605;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=-0.301;QD=19.00;ReadPosRankSum=2.425;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3800,444,0 chrIX 363899 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.21;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3028,351,0 chrIX 363925 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.58;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3155,363,0 chrIX 364352 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2530,282,0 chrIX 364631 . T C 828 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.00;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:861,99,0 chrIX 364704 . A G 1042 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.68;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1075,123,0 chrIX 364746 . C A 870 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.71;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:903,102,0 chrIX 364755 . C T 808 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.79;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:841,99,0 chrIX 365355 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1709,198,0 chrIX 366054 . C G 7032.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=23.5565;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.56;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:0,340:342:99:7032,821,0 chrIX 366246 . G T 5417.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.4081;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.11;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5417,612,0 chrIX 366456 . T G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=1;MQRankSum=-0.314;QD=19.05;ReadPosRankSum=1.709;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:2928,345,0 chrIX 366477 . T C 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=150;Dels=0.00;FS=5.228;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=2;MQRankSum=1.524;QD=18.27;ReadPosRankSum=2.953;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2773,324,0 chrIX 366567 . C T 705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=-0.829;QD=15.00;ReadPosRankSum=-1.281;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,45:47:84:738,84,0 chrIX 366571 . A G 142.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=17.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:21:175,21,0 chrIX 366633 . T A 201.01 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=3.72;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:27:234,27,0 chrIX 366638 . A G 273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;MQRankSum=-1.341;QD=4.33;ReadPosRankSum=1.509;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:36:306,36,0 chrIX 367155 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.187;DP=175;Dels=0.00;FS=16.723;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.005;QD=21.01;ReadPosRankSum=3.389;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:4,169:175:99:3676,443,0 chrIX 367284 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=4.467;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.552;QD=20.66;ReadPosRankSum=1.655;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3719,432,0 chrIX 367474 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2420,279,0 chrIX 367836 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.94;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2797,324,0 chrIX 367896 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0846;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.58;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2472,276,0 chrIX 367929 . T A 1949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.442;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.954;QD=21.90;ReadPosRankSum=1.654;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1982,222,0 chrIX 368031 . C T 2093 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0738;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.14;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2126,240,0 chrIX 368158 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.64;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1599,186,0 chrIX 368159 . T C 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=87;Dels=0.00;FS=2.603;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=-0.221;QD=18.37;ReadPosRankSum=2.919;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1631,189,0 chrIX 368214 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.88;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1957,225,0 chrIX 368217 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.46;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1909,216,0 chrIX 368576 . G A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.3157;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.86;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4151,468,0 chrIX 368643 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.1849;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.26;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4465,510,0 chrIX 368739 . T C 4179.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4179,489,0 chrIX 368868 . T A 5172.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.09;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5172,579,0 chrIX 369297 . C A 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.571;QD=20.56;ReadPosRankSum=0.397;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,178:183:99:3762,435,0 chrIX 369452 . C A 5679.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=19.8330;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.76;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5679,630,0 chrIX 369589 . G A 4802.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.70;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4802,555,0 chrIX 370024 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=157;Dels=0.00;FS=5.779;HaplotypeScore=15.3762;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-1.224;QD=18.94;ReadPosRankSum=2.930;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3007,348,0 chrIX 370118 . A T 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=3.016;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.570;QD=22.46;ReadPosRankSum=2.369;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3437,384,0 chrIX 370178 . T A 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=4.150;HaplotypeScore=8.2682;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=1.584;QD=15.34;ReadPosRankSum=1.673;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1843,216,0 chrIX 370304 . C T 1831 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.78;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1864,213,0 chrIX 370386 . A T 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=0.000;QD=17.68;ReadPosRankSum=1.522;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1200,141,0 chrIX 370388 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=19.42;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1276,141,0 chrIX 370601 . A G 1139 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.78;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1172,135,0 chrIX 370992 . G T 5287.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.19;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5287,588,0 chrIX 371210 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=3.929;HaplotypeScore=8.0874;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-1.051;QD=20.75;ReadPosRankSum=1.712;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3590,408,0 chrIX 371225 . C A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=20.47;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3725,423,0 chrIX 371244 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.85;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3499,405,0 chrIX 371255 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.5544;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=17.60;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3626,420,0 chrIX 371441 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.8141;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.215;QD=22.09;ReadPosRankSum=1.691;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3755,438,0 chrIX 371627 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.58;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3432,399,0 chrIX 371714 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.96;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3474,393,0 chrIX 371952 . A C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.435;QD=17.48;ReadPosRankSum=1.733;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2568,300,0 chrIX 371957 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=17.94;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2635,300,0 chrIX 372398 . T C 3993.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3993,462,0 chrIX 372464 . T C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.094;QD=19.93;ReadPosRankSum=1.678;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2624,306,0 chrIX 372678 . C A 2975 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.72;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3008,333,0 chrIX 373026 . G A 122.13 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.18;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:18:155,18,0 chrIX 373063 . A G 659 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:30:78:692,78,0 chrIX 373284 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8407;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.76;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2946,342,0 chrIX 373728 . C G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3427,405,0 chrIX 373876 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.72;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3117,351,0 chrIX 373971 . A G 3122 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.7756;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.54;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3155,369,0 chrIX 374268 . T C 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.880;QD=21.44;ReadPosRankSum=-0.199;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2649,299,0 chrIX 374496 . C G 3786.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.81;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3786,441,0 chrIX 374542 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.25;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3336,372,0 chrIX 374562 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.22;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3345,381,0 chrIX 374576 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.79;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3514,411,0 chrIX 374674 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.7796;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.48;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,199:207:99:4239,498,0 chrIX 374861 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.58;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2644,294,0 chrIX 375017 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.37;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2405,279,0 chrIX 375044 . T G 2338 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.65;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2371,282,0 chrIX 375107 . T C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.7761;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.693;QD=21.52;ReadPosRankSum=1.575;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1927,225,0 chrIX 375220 . G C 1871 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.26;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1904,219,0 chrIX 375595 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.70;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2890,327,0 chrIX 375691 . T C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.003;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.0102;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.550;QD=21.16;ReadPosRankSum=-0.061;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2466,268,0 chrIX 376081 . C T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.05;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4031,453,0 chrIX 376391 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=7.006;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.670;QD=23.58;ReadPosRankSum=2.382;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3419,390,0 chrIX 376864 . T A 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=157;Dels=0.00;FS=2.987;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.978;QD=20.34;ReadPosRankSum=2.293;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3227,369,0 chrIX 377342 . G C 1984 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.29;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2017,240,0 chrIX 377556 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.12;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3583,411,0 chrIX 378238 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3541,402,0 chrIX 378456 . A C 4165.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3815;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.27;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4165,483,0 chrIX 379276 . A C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.03;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3501,408,0 chrIX 379313 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=4.009;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.400;QD=23.27;ReadPosRankSum=1.708;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3397,399,0 chrIX 379472 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.03;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3206,357,0 chrIX 379493 . C G 2560 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.29;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:2593,303,0 chrIX 379499 . T C 2334 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.68;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2367,282,0 chrIX 379529 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.93;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2903,324,0 chrIX 379574 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.97;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4175,497,0 chrIX 379840 . T C 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=4.393;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.433;QD=20.22;ReadPosRankSum=1.693;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1833,225,0 chrIX 379996 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2091,246,0 chrIX 380031 . A T 2097 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.6820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2130,246,0 chrIX 380279 . T A 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=185;Dels=0.00;FS=6.073;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.777;QD=22.16;ReadPosRankSum=2.919;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4100,465,0 chrIX 380666 . A G 2758 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.72;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2791,321,0 chrIX 380768 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=23.74;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2739,312,0 chrIX 380809 . A G 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=5.141;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.636;QD=23.61;ReadPosRankSum=1.661;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2370,273,0 chrIX 380934 . A G 2321 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=127.6455;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=14.69;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2354,282,0 chrIX 380958 . T C 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=163;Dels=0.00;FS=3.064;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;MQRankSum=-0.962;QD=10.43;ReadPosRankSum=1.518;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:1733,204,0 chrIX 380973 . A G 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.302;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;MQRankSum=-0.675;QD=10.17;ReadPosRankSum=1.710;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:1599,189,0 chrIX 380999 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=13.41;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2152,249,0 chrIX 381073 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.89;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4137,465,0 chrIX 381084 . A C 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=3.300;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.726;QD=19.78;ReadPosRankSum=1.713;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3699,429,0 chrIX 381106 . C A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.93;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3746,417,0 chrIX 381240 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.90;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3512,405,0 chrIX 381277 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=4.580;HaplotypeScore=20.6865;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.674;QD=20.80;ReadPosRankSum=1.674;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3724,432,0 chrIX 381328 . C A 3150 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6362;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.45;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3183,366,0 chrIX 381442 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.34;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3481,396,0 chrIX 381521 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.23;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2283,267,0 chrIX 381525 . C G 2229 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.27;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2262,261,0 chrIX 381607 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.269;DP=189;Dels=0.00;FS=3.373;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.695;QD=22.32;ReadPosRankSum=1.584;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4218,458,0 chrIX 381696 . A G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=133;Dels=0.00;FS=6.809;HaplotypeScore=5.8519;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.749;QD=22.14;ReadPosRankSum=2.376;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2977,354,0 chrIX 381823 . A C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.732;QD=20.16;ReadPosRankSum=1.710;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3258,384,0 chrIX 382331 . T C 2391 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=18.83;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2424,282,0 chrIX 382343 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=17.13;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2260,261,0 chrIX 382352 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.22;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2207,255,0 chrIX 382389 . T G 1230 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=12.06;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1263,150,0 chrIX 382390 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=12.21;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1291,147,0 chrIX 382403 . A G 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;MQRankSum=0.167;QD=12.94;ReadPosRankSum=1.699;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:1418,165,0 chrIX 382528 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.1134;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.22;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3866,441,0 chrIX 382609 . G C 6548.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=36.6110;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.42;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,286:292:99:6548,770,0 chrIX 382690 . T C 6699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=310;Dels=0.00;FS=2.557;HaplotypeScore=22.8896;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.676;QD=21.61;ReadPosRankSum=2.938;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:3,304:310:99:6699,782,0 chrIX 382792 . T C 7467.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.997;DP=392;Dels=0.00;FS=32.489;HaplotypeScore=19.4338;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=2.429;QD=19.05;ReadPosRankSum=5.063;SB=-4.129e+03 GT:AD:DP:GQ:PL 1/1:9,383:392:99:7467,881,0 chrIX 383027 . G A 4589.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=18.96;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4589,516,0 chrIX 383041 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=233;Dels=0.00;FS=5.330;HaplotypeScore=3.7362;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;MQRankSum=1.135;QD=18.09;ReadPosRankSum=0.612;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:4216,471,0 chrIX 383042 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.3027;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=17.15;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:3996,468,0 chrIX 383061 . G T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=16.12;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:3917,438,0 chrIX 383079 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=15.86;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:3758,420,0 chrIX 383427 . A G 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=71;Dels=0.00;FS=2.487;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.841;QD=16.41;ReadPosRankSum=2.871;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:3,67:71:99:1198,138,0 chrIX 383441 . A G 882 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=16.96;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:915,108,0 chrIX 383530 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2209,246,0 chrIX 383605 . T C 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.666;QD=23.62;ReadPosRankSum=1.688;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1875,219,0 chrIX 383709 . C A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3375,378,0 chrIX 383847 . T C 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.132;QD=21.89;ReadPosRankSum=1.715;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4444,519,0 chrIX 383892 . G C 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.167;DP=149;Dels=0.00;FS=172.428;HaplotypeScore=20.3989;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=1.361;QD=0.89;ReadPosRankSum=-6.304;SB=-6.175e-03 GT:AD:DP:GQ:PL 0/1:112,34:149:99:162,0,1440 chrIX 383978 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.53;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4263,489,0 chrIX 384077 . C A 4440.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.91;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4440,516,0 chrIX 384118 . A G 4247.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.13;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4247,501,0 chrIX 384159 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.74;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3478,387,0 chrIX 384189 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=141;Dels=0.00;FS=3.038;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.080;QD=20.67;ReadPosRankSum=2.361;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,136:141:99:2948,348,0 chrIX 384385 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.35;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3193,363,0 chrIX 384418 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.03;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3617,417,0 chrIX 384629 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.66;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3853,444,0 chrIX 384680 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8589;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.53;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4069,474,0 chrIX 384737 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.261;QD=21.21;ReadPosRankSum=2.421;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:3733,432,0 chrIX 384843 . A C 2964 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.25;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2997,354,0 chrIX 384855 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6288;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.36;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,146:152:99:2823,327,0 chrIX 384922 . A C 2009 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=22.6963;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=14.05;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2042,237,0 chrIX 385024 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.230;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.369;QD=21.94;ReadPosRankSum=1.711;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3577,411,0 chrIX 385049 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.45;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3229,360,0 chrIX 385091 . C A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.5656;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.53;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3596,417,0 chrIX 385134 . G T 4787.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.82;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4787,537,0 chrIX 385193 . T A 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=208;Dels=0.00;FS=6.073;HaplotypeScore=12.0017;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.705;QD=23.26;ReadPosRankSum=2.928;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4838,543,0 chrIX 385232 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4003;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.94;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3817,429,0 chrIX 385272 . A G 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.993;QD=18.15;ReadPosRankSum=1.656;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2520,305,0 chrIX 385292 . T C 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=2.834;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.942;QD=19.45;ReadPosRankSum=1.319;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2698,312,0 chrIX 385355 . A C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=180;Dels=0.00;FS=2.572;HaplotypeScore=18.5843;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.344;QD=19.11;ReadPosRankSum=2.422;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3439,405,0 chrIX 385422 . G C 3112 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.08;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3145,366,0 chrIX 385432 . A G 2975 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.80;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3008,348,0 chrIX 385473 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=17.02;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1599,186,0 chrIX 385505 . A G 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.302;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;MQRankSum=-1.417;QD=15.23;ReadPosRankSum=1.687;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1206,141,0 chrIX 385541 . T G 1071 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=13.39;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1104,132,0 chrIX 385542 . C G 1074 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=13.42;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1107,132,0 chrIX 385546 . C T 1171 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=14.11;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1204,135,0 chrIX 385550 . C T 1298 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=13.96;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1331,159,0 chrIX 385641 . T A 29.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;DP=88;Dels=0.00;FS=4.247;HaplotypeScore=34.0406;MLEAC=1;MLEAF=0.500;MQ=51.12;MQ0=0;MQRankSum=3.158;QD=0.33;ReadPosRankSum=3.255;SB=-3.231e+02 GT:AD:DP:GQ:PL 0/1:35,53:88:16:59,0,16 chrIX 385711 . G C 2066 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=21.75;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2099,249,0 chrIX 385718 . A G 2125 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=21.68;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2158,255,0 chrIX 385724 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=20.43;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2096,255,0 chrIX 385784 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=17.69;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1519,177,0 chrIX 385810 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.89;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1431,165,0 chrIX 385820 . T A 1475 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=75.2117;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=17.15;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1508,168,0 chrIX 385951 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.29;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3163,363,0 chrIX 385964 . T G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=150;Dels=0.00;FS=2.622;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.817;QD=20.09;ReadPosRankSum=2.417;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3046,354,0 chrIX 386040 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=21.55;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3244,366,0 chrIX 386051 . A G 3032 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.66;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3065,354,0 chrIX 386090 . C A 3035 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.37;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3068,351,0 chrIX 386125 . A T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.3499;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.26;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3316,375,0 chrIX 386244 . A G 2519 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=19.23;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2552,297,0 chrIX 386334 . A T 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;MQRankSum=-1.530;QD=21.77;ReadPosRankSum=1.698;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2275,252,0 chrIX 386352 . T G 1815 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=18.91;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1848,216,0 chrIX 386373 . G C 1458 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=16.20;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1491,174,0 chrIX 386399 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=14.44;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1477,171,0 chrIX 386421 . T C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;MQRankSum=-1.224;QD=13.67;ReadPosRankSum=1.702;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1619,192,0 chrIX 386435 . A G 1745 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=13.74;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1778,213,0 chrIX 386447 . T G 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.685;QD=15.16;ReadPosRankSum=1.678;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1989,234,0 chrIX 386492 . G C 2353 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=18.10;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2386,276,0 chrIX 386511 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=18.77;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2117,246,0 chrIX 386561 . G C 1195 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=13.13;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1228,144,0 chrIX 386589 . A G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.089;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=-0.727;QD=14.36;ReadPosRankSum=1.663;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1469,171,0 chrIX 386592 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=14.24;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1500,174,0 chrIX 386665 . G T 2912 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=20.80;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2945,339,0 chrIX 386757 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.81;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3030,342,0 chrIX 386765 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.62;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3044,339,0 chrIX 386850 . G C 2621 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.86;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2654,309,0 chrIX 387056 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2144;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.63;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2845,318,0 chrIX 387176 . G A 185.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.857;DP=61;Dels=0.00;FS=11.960;HaplotypeScore=24.2627;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=2.154;QD=3.04;ReadPosRankSum=0.470;SB=-1.362e+02 GT:AD:DP:GQ:PL 1/1:10,50:61:8:217,8,0 chrIX 387314 . T C 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.546;DP=100;Dels=0.00;FS=2.434;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.000;QD=18.98;ReadPosRankSum=2.930;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:1931,228,0 chrIX 387368 . A G 3144 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=21.83;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3177,366,0 chrIX 387393 . T C 3133 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=23.21;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3166,369,0 chrIX 387419 . A C 2870 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=21.26;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:2903,342,0 chrIX 387502 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=177;Dels=0.00;FS=2.685;HaplotypeScore=13.4517;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=-0.992;QD=22.90;ReadPosRankSum=2.380;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4054,471,0 chrIX 387531 . T C 4602.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=22.23;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4602,525,0 chrIX 387587 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;MQRankSum=0.659;QD=18.42;ReadPosRankSum=1.713;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3408,402,0 chrIX 387612 . C T 2493 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=118.4915;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=17.94;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2526,282,0 chrIX 387640 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=16.19;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1539,177,0 chrIX 387779 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=18.67;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3076,348,0 chrIX 387804 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=16.63;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:2694,318,0 chrIX 387870 . G T 2171 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=19.56;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2204,255,0 chrIX 387908 . A G 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;MQRankSum=0.219;QD=20.75;ReadPosRankSum=1.692;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1838,213,0 chrIX 387914 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=20.74;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1630,195,0 chrIX 387959 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=17.83;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1192,138,0 chrIX 388008 . T C 229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=46.9227;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=1;MQRankSum=-0.644;QD=6.36;ReadPosRankSum=1.040;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:33:262,33,0 chrIX 388015 . T C 561 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=1;QD=11.69;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:69:594,69,0 chrIX 388037 . T C 932 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=53.1579;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=1;QD=14.34;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:965,111,0 chrIX 388158 . C A 1050 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=24.42;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1083,126,0 chrIX 388181 . G C 831 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=21.31;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:864,102,0 chrIX 388183 . G C 801 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=21.65;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:834,99,0 chrIX 388217 . T G 243 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=7.59;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:36:276,36,0 chrIX 388220 . A G 223 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=7.43;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:33:256,33,0 chrIX 388227 . C T 220 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;MQRankSum=-0.975;QD=6.88;ReadPosRankSum=-0.758;SB=-7.802e+01 GT:AD:DP:GQ:PL 1/1:1,31:32:30:253,30,0 chrIX 388256 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=1;QD=12.66;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:742,87,0 chrIX 388279 . T C 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=1;MQRankSum=-0.945;QD=13.39;ReadPosRankSum=2.373;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:2,63:66:99:917,105,0 chrIX 388304 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=1;QD=15.69;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1037,117,0 chrIX 388520 . A C 1807 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=19.86;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1840,216,0 chrIX 388551 . A C 2514 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=1;QD=22.85;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2547,294,0 chrIX 388652 . G C 2103 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=20.82;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2136,252,0 chrIX 388673 . A C 2529 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=21.80;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2562,294,0 chrIX 388703 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.74;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2460,282,0 chrIX 389030 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.88;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2894,336,0 chrIX 389156 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.31;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2576,294,0 chrIX 389168 . T A 2231 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.09;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2264,255,0 chrIX 389212 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.51;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1715,198,0 chrIX 389262 . A G 108.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DP=78;Dels=0.00;FS=3.776;HaplotypeScore=64.5782;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=0.892;QD=1.38;ReadPosRankSum=3.671;SB=-5.570e+02 GT:AD:DP:GQ:PL 0/1:7,71:78:41:138,0,41 chrIX 389295 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.45;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1939,216,0 chrIX 389371 . A T 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.138;DP=94;Dels=0.00;FS=5.321;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.852;QD=21.49;ReadPosRankSum=3.306;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:4,90:94:99:2053,237,0 chrIX 389433 . T C 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.421;QD=21.99;ReadPosRankSum=1.654;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1990,234,0 chrIX 389512 . T A 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.463;DP=107;Dels=0.00;FS=5.250;HaplotypeScore=10.0942;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.576;QD=22.40;ReadPosRankSum=2.897;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2430,251,0 chrIX 389745 . C T 5285.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.9410;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=22.88;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5285,597,0 chrIX 389949 . T C 5648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=354;Dels=0.00;FS=8.284;HaplotypeScore=21.2841;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;MQRankSum=1.643;QD=15.95;ReadPosRankSum=3.422;SB=-3.574e+03 GT:AD:DP:GQ:PL 1/1:4,349:354:99:5648,660,0 chrIX 389961 . G T 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.910;DP=352;Dels=0.00;FS=276.367;HaplotypeScore=7.3426;MLEAC=1;MLEAF=0.500;MQ=35.89;MQ0=0;MQRankSum=-4.903;QD=0.31;ReadPosRankSum=0.120;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:255,97:352:99:138,0,3809 chrIX 389962 . A G 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.257;DP=354;Dels=0.00;FS=275.976;HaplotypeScore=6.3847;MLEAC=1;MLEAF=0.500;MQ=35.86;MQ0=0;MQRankSum=-5.015;QD=0.15;ReadPosRankSum=0.289;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:257,97:354:84:84,0,3935 chrIX 389964 . T C 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DP=353;Dels=0.00;FS=269.316;HaplotypeScore=5.9591;MLEAC=1;MLEAF=0.500;MQ=35.08;MQ0=0;MQRankSum=-3.644;QD=0.28;ReadPosRankSum=0.223;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:255,97:353:99:130,0,3556 chrIX 389968 . C T 4705.01 SnpCluster AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=3.7532;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=13.56;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:0,347:347:99:4705,540,0 chrIX 390207 . T C 8596.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=414;Dels=0.00;FS=11.092;HaplotypeScore=16.8916;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-0.383;QD=20.76;ReadPosRankSum=2.920;SB=-4.209e+03 GT:AD:DP:GQ:PL 1/1:3,408:414:99:8596,1010,0 chrIX 390232 . G T 9167.01 filter AC=2;AF=1.00;AN=2;DP=432;Dels=0.00;FS=0.000;HaplotypeScore=11.3400;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=21.22;SB=-4.224e+03 GT:AD:DP:GQ:PL 1/1:0,432:432:99:9167,1041,0 chrIX 390268 . T C 1103.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.995;DP=474;Dels=0.00;FS=252.081;HaplotypeScore=28.0542;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=0;MQRankSum=-14.641;QD=2.33;ReadPosRankSum=-4.526;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:346,126:474:99:1133,0,6411 chrIX 390271 . A G 961.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.044;DP=472;Dels=0.00;FS=241.023;HaplotypeScore=31.6799;MLEAC=1;MLEAF=0.500;MQ=51.36;MQ0=0;MQRankSum=-14.763;QD=2.04;ReadPosRankSum=-5.970;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:347,124:472:99:991,0,6226 chrIX 390275 . A G 8753.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.746;DP=452;Dels=0.00;FS=4.797;HaplotypeScore=50.0063;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=2.355;QD=19.37;ReadPosRankSum=3.784;SB=-3.545e+03 GT:AD:DP:GQ:PL 1/1:5,447:452:99:8753,1011,0 chrIX 390679 . G A 5472.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.71;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5472,615,0 chrIX 390718 . T C 6014.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.36;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6014,707,0 chrIX 390814 . A T 4866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=3.274;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.055;QD=22.02;ReadPosRankSum=1.638;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4866,575,0 chrIX 390899 . T G 5607.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=23.17;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5607,657,0 chrIX 390981 . T C 93.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=7.17;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,10:13:15:126,15,0 chrIX 391033 . A T 251 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6616;MLEAC=2;MLEAF=1.00;MQ=39.25;MQ0=0;QD=4.33;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:33:284,33,0 chrIX 391113 . A T 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.286;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=1;MQRankSum=1.428;QD=21.10;ReadPosRankSum=1.596;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4030,435,0 chrIX 391153 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.3630;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=16.55;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1771,207,0 chrIX 391166 . A G 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=66;Dels=0.00;FS=2.587;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;MQRankSum=-2.801;QD=15.09;ReadPosRankSum=2.771;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1029,123,0 chrIX 391184 . C G 194.01 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.60;MQ0=0;QD=11.41;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:27:227,27,0 chrIX 391186 . A G 142.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.60;MQ0=0;MQRankSum=-1.531;QD=8.36;ReadPosRankSum=1.531;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:21:175,21,0 chrIX 391273 . A G 40.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=4.9532;MLEAC=2;MLEAF=1.00;MQ=20.93;MQ0=3;QD=3.72;SB=-2.372e+01 GT:AD:DP:GQ:PL 1/1:3,8:11:9:73,9,0 chrIX 391276 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.9532;MLEAC=2;MLEAF=1.00;MQ=20.04;MQ0=4;QD=3.75;SB=-2.372e+01 GT:AD:DP:GQ:PL 1/1:3,8:12:9:77,9,0 chrIX 391340 . A G 662 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.698;DP=99;Dels=0.00;FS=1.089;HaplotypeScore=71.5480;MLEAC=2;MLEAF=1.00;MQ=19.07;MQ0=26;MQRankSum=2.499;QD=6.69;ReadPosRankSum=-0.007;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:38,60:99:84:695,84,0 chrIX 391363 . A G 436.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=133;Dels=0.00;FS=1.814;HaplotypeScore=53.0306;MLEAC=2;MLEAF=1.00;MQ=17.39;MQ0=45;MQRankSum=2.720;QD=3.28;ReadPosRankSum=2.211;SB=-2.961e+02 GT:AD:DP:GQ:PL 1/1:76,56:133:1:465,1,0 chrIX 391411 . A G 321.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.409;DP=153;Dels=0.00;FS=1.699;HaplotypeScore=11.6251;MLEAC=2;MLEAF=1.00;MQ=14.44;MQ0=76;MQRankSum=-0.675;QD=2.10;ReadPosRankSum=1.967;SB=-3.855e+01 GT:AD:DP:GQ:PL 1/1:16,137:153:2:351,2,0 chrIX 391441 . A G 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;DP=193;Dels=0.00;FS=22.434;HaplotypeScore=11.2065;MLEAC=1;MLEAF=0.500;MQ=13.25;MQ0=101;MQRankSum=1.272;QD=1.00;ReadPosRankSum=-2.194;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:98,92:193:99:223,0,168 chrIX 391453 . G T 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.435;DP=196;Dels=0.00;FS=8.450;HaplotypeScore=8.1355;MLEAC=1;MLEAF=0.500;MQ=12.52;MQ0=99;MQRankSum=-0.954;QD=0.71;ReadPosRankSum=6.398;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:105,91:196:99:169,0,236 chrIX 391486 . A G 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.918;DP=184;Dels=0.00;FS=21.449;HaplotypeScore=2.7085;MLEAC=1;MLEAF=0.500;MQ=10.53;MQ0=81;MQRankSum=0.512;QD=0.72;ReadPosRankSum=-4.685;SB=-5.368e+01 GT:AD:DP:GQ:PL 0/1:108,76:184:99:163,0,214 chrIX 391498 . G T 152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DP=187;Dels=0.00;FS=15.801;HaplotypeScore=5.2189;MLEAC=1;MLEAF=0.500;MQ=10.43;MQ0=84;MQRankSum=-0.273;QD=0.81;ReadPosRankSum=4.241;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,106:187:99:182,0,189 chrIX 391543 . G T 224.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=151;Dels=0.00;FS=3.674;HaplotypeScore=9.6956;MLEAC=1;MLEAF=0.500;MQ=10.01;MQ0=80;MQRankSum=4.806;QD=1.48;ReadPosRankSum=-4.202;SB=-1.561e+02 GT:AD:DP:GQ:PL 0/1:55,96:151:13:254,0,13 chrIX 391582 . A G 495 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;DP=184;Dels=0.00;FS=4.184;HaplotypeScore=8.3291;MLEAC=2;MLEAF=1.00;MQ=10.79;MQ0=107;MQRankSum=0.410;QD=2.69;ReadPosRankSum=1.459;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:9,172:184:66:528,66,0 chrIX 391618 . A G 476 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DP=203;Dels=0.00;FS=3.925;HaplotypeScore=3.9502;MLEAC=2;MLEAF=1.00;MQ=9.33;MQ0=124;MQRankSum=0.417;QD=2.34;ReadPosRankSum=1.425;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:6,196:203:63:509,63,0 chrIX 391660 . G T 69.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1018;MLEAC=1;MLEAF=0.500;MQ=6.93;MQ0=67;MQRankSum=0.584;QD=0.70;ReadPosRankSum=3.675;SB=-5.868e+01 GT:AD:DP:GQ:PL 0/1:36,62:99:5:99,0,5 chrIX 391696 . A G 10.52 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;DP=54;Dels=0.00;FS=2.643;HaplotypeScore=4.0625;MLEAC=1;MLEAF=0.500;MQ=7.63;MQ0=32;MQRankSum=2.105;QD=0.19;ReadPosRankSum=-0.383;SB=-1.911e+01 GT:AD:DP:GQ:PL 0/1:49,5:54:13:40,0,13 chrIX 391750 . G T 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DP=122;Dels=0.00;FS=17.201;HaplotypeScore=10.0327;MLEAC=1;MLEAF=0.500;MQ=11.11;MQ0=59;MQRankSum=0.471;QD=0.61;ReadPosRankSum=-2.957;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:59,63:122:66:105,0,66 chrIX 391789 . A G 321.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.109;DP=142;Dels=0.00;FS=3.064;HaplotypeScore=4.7191;MLEAC=2;MLEAF=1.00;MQ=12.83;MQ0=64;MQRankSum=1.189;QD=2.26;ReadPosRankSum=-3.128;SB=-2.046e+02 GT:AD:DP:GQ:PL 1/1:13,129:142:2:351,2,0 chrIX 391819 . A G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.171;DP=100;Dels=0.00;FS=32.198;HaplotypeScore=6.8352;MLEAC=1;MLEAF=0.500;MQ=13.46;MQ0=40;MQRankSum=0.688;QD=0.28;ReadPosRankSum=3.496;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,21:100:58:58,0,177 chrIX 391831 . T G 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;DP=56;Dels=0.02;FS=17.988;HaplotypeScore=16.6218;MLEAC=1;MLEAF=0.500;MQ=16.49;MQ0=16;MQRankSum=1.064;QD=1.27;ReadPosRankSum=4.155;SB=0.021 GT:AD:DP:GQ:PL 0/1:39,13:55:71:101,0,71 chrIX 391837 . G A 210.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=26;Dels=0.00;FS=4.260;HaplotypeScore=13.4719;MLEAC=2;MLEAF=1.00;MQ=18.65;MQ0=10;MQRankSum=0.868;QD=8.08;ReadPosRankSum=0.434;SB=-9.896e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:27:243,27,0 chrIX 391933 . C T 631 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7734;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=25;QD=5.84;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:81:664,81,0 chrIX 391963 . G A 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;DP=119;Dels=0.00;FS=12.444;HaplotypeScore=17.4799;MLEAC=1;MLEAF=0.500;MQ=14.42;MQ0=59;MQRankSum=2.229;QD=0.55;ReadPosRankSum=2.425;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,10:119:95:95,0,304 chrIX 391977 . T C 235 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.477;DP=93;Dels=0.00;FS=8.858;HaplotypeScore=5.6558;MLEAC=2;MLEAF=1.00;MQ=11.19;MQ0=59;MQRankSum=-0.259;QD=2.53;ReadPosRankSum=3.477;SB=-2.600e+01 GT:AD:DP:GQ:PL 1/1:5,86:93:33:268,33,0 chrIX 391990 . A G 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;DP=119;Dels=0.00;FS=9.674;HaplotypeScore=13.3302;MLEAC=1;MLEAF=0.500;MQ=12.22;MQ0=59;MQRankSum=0.836;QD=1.34;ReadPosRankSum=0.652;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:90,29:119:99:189,0,220 chrIX 392002 . G T 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.012;DP=118;Dels=0.00;FS=9.438;HaplotypeScore=40.0988;MLEAC=1;MLEAF=0.500;MQ=12.32;MQ0=56;MQRankSum=-0.873;QD=1.20;ReadPosRankSum=-1.253;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:39,79:118:99:172,0,245 chrIX 392014 . T A 134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;DP=113;Dels=0.00;FS=8.711;HaplotypeScore=33.4271;MLEAC=1;MLEAF=0.500;MQ=12.13;MQ0=52;MQRankSum=1.845;QD=1.19;ReadPosRankSum=1.051;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:87,25:113:99:164,0,179 chrIX 392015 . A G 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;DP=114;Dels=0.00;FS=8.711;HaplotypeScore=29.7130;MLEAC=1;MLEAF=0.500;MQ=12.08;MQ0=52;MQRankSum=1.923;QD=1.38;ReadPosRankSum=0.880;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:88,25:114:99:187,0,154 chrIX 392041 . A G 346 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5585;MLEAC=2;MLEAF=1.00;MQ=12.67;MQ0=27;MQRankSum=-1.732;QD=4.12;ReadPosRankSum=1.672;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:6,78:84:48:379,48,0 chrIX 392089 . G A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.663;DP=16;Dels=0.00;FS=11.553;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=1;MQRankSum=1.406;QD=0.93;ReadPosRankSum=-3.204;SB=-1.401e+01 GT:AD:DP:GQ:PL 1/1:7,8:16:6:46,6,0 chrIX 392119 . A G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=44;Dels=0.00;FS=10.704;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=16.98;MQ0=23;MQRankSum=1.557;QD=2.57;ReadPosRankSum=3.585;SB=-5.188e+01 GT:AD:DP:GQ:PL 0/1:25,19:44:38:143,0,38 chrIX 392167 . A G 238.17 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.195;DP=117;Dels=0.00;FS=2.539;HaplotypeScore=22.1542;MLEAC=2;MLEAF=1.00;MQ=13.57;MQ0=77;MQRankSum=0.924;QD=2.04;ReadPosRankSum=0.203;SB=-1.421e+02 GT:AD:DP:GQ:PL 1/1:14,102:117:17:271,17,0 chrIX 392170 . G A 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;DP=124;Dels=0.02;FS=34.528;HaplotypeScore=24.8897;MLEAC=1;MLEAF=0.500;MQ=13.20;MQ0=84;MQRankSum=1.649;QD=0.90;ReadPosRankSum=-2.654;SB=-8.881e+00 GT:AD:DP:GQ:PL 0/1:97,24:122:87:142,0,87 chrIX 392197 . A G 121.98 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;DP=143;Dels=0.00;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.74;MQ0=112;MQRankSum=1.893;QD=0.85;ReadPosRankSum=2.372;SB=-9.755e-01 GT:AD:DP:GQ:PL 0/1:106,37:143:3:151,0,3 chrIX 392221 . T A 94.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DP=144;Dels=0.01;FS=4.314;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=8.87;MQ0=117;MQRankSum=1.632;QD=0.65;ReadPosRankSum=1.481;SB=-2.373e-02 GT:AD:DP:GQ:PL 0/1:110,33:143:21:124,0,21 chrIX 392222 . A G 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;DP=146;Dels=0.01;FS=3.522;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=8.81;MQ0=119;MQRankSum=2.074;QD=0.69;ReadPosRankSum=2.025;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:111,32:145:25:130,0,25 chrIX 392248 . A G 115.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.448;DP=150;Dels=0.00;FS=22.765;HaplotypeScore=7.6975;MLEAC=2;MLEAF=1.00;MQ=7.42;MQ0=122;MQRankSum=3.663;QD=0.77;ReadPosRankSum=0.659;SB=2.87 GT:AD:DP:GQ:PL 1/1:28,120:150:18:148,18,0 chrIX 392256 . T A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=156;Dels=0.00;FS=6.532;HaplotypeScore=5.9427;MLEAC=1;MLEAF=0.500;MQ=5.98;MQ0=128;MQRankSum=1.783;QD=0.07;ReadPosRankSum=0.149;SB=-7.065e-03 GT:AD:DP:GQ:PL 0/1:147,9:156:36:40,0,36 chrIX 392278 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.755;DP=144;Dels=0.00;FS=10.139;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=5.62;MQ0=118;MQRankSum=2.695;QD=0.11;ReadPosRankSum=-2.910;SB=1.24 GT:AD:DP:GQ:PL 1/1:100,44:144:6:47,6,0 chrIX 392479 . G T 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=169;Dels=0.00;FS=3.917;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.32;MQ0=140;MQRankSum=0.512;QD=0.30;ReadPosRankSum=1.244;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:77,91:169:9:83,9,0 chrIX 392518 . A G 230 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.205;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=7.22;MQ0=108;MQRankSum=0.829;QD=1.48;ReadPosRankSum=0.979;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:9,144:155:33:263,33,0 chrIX 392554 . A G 182.76 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.85;MQ0=77;MQRankSum=0.417;QD=1.60;ReadPosRankSum=2.810;SB=-7.176e+01 GT:AD:DP:GQ:PL 1/1:8,105:114:6:214,6,0 chrIX 392635 . A G 124.13 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=14.39;MQ0=62;QD=1.33;SB=-1.591e+02 GT:AD:DP:GQ:PL 1/1:13,79:93:18:157,18,0 chrIX 392643 . T A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=90;Dels=0.00;FS=22.411;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=15.90;MQ0=54;MQRankSum=1.155;QD=0.33;ReadPosRankSum=-3.626;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:75,15:90:60:60,0,85 chrIX 392665 . A G 78.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.524;DP=80;Dels=0.00;FS=19.505;HaplotypeScore=7.2824;MLEAC=1;MLEAF=0.500;MQ=19.01;MQ0=36;MQRankSum=2.557;QD=0.98;ReadPosRankSum=2.440;SB=-8.834e+01 GT:AD:DP:GQ:PL 0/1:51,29:80:8:108,0,8 chrIX 392689 . T A 97.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.063;DP=51;Dels=0.00;FS=39.330;HaplotypeScore=9.4873;MLEAC=2;MLEAF=1.00;MQ=20.16;MQ0=17;MQRankSum=4.101;QD=1.91;ReadPosRankSum=3.005;SB=-1.033e+02 GT:AD:DP:GQ:PL 1/1:24,27:51:15:130,15,0 chrIX 392690 . A G 95.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.321;DP=51;Dels=0.00;FS=39.330;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=20.16;MQ0=17;MQRankSum=3.988;QD=1.87;ReadPosRankSum=3.080;SB=-1.033e+02 GT:AD:DP:GQ:PL 1/1:24,27:51:15:128,15,0 chrIX 392932 . G T 1658.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=8.139;DP=170;Dels=0.00;FS=51.425;HaplotypeScore=137.3705;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;MQRankSum=0.589;QD=9.76;ReadPosRankSum=8.150;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:39,131:170:11:1691,11,0 chrIX 392939 . C G 1679.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;DP=183;Dels=0.00;FS=48.696;HaplotypeScore=177.8057;MLEAC=1;MLEAF=0.500;MQ=36.01;MQ0=0;MQRankSum=1.715;QD=9.17;ReadPosRankSum=8.174;SB=-9.920e+02 GT:AD:DP:GQ:PL 0/1:48,135:183:99:1709,0,99 chrIX 392968 . G A 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.693;DP=214;Dels=0.00;FS=72.878;HaplotypeScore=12.6621;MLEAC=1;MLEAF=0.500;MQ=35.67;MQ0=0;MQRankSum=-4.384;QD=0.40;ReadPosRankSum=6.293;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,72:214:99:115,0,1773 chrIX 392998 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=175.6636;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=1;QD=6.41;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,185:186:99:1239,150,0 chrIX 393003 . A T 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;DP=184;Dels=0.00;FS=10.908;HaplotypeScore=163.4074;MLEAC=1;MLEAF=0.500;MQ=31.02;MQ0=1;MQRankSum=-0.913;QD=0.42;ReadPosRankSum=-5.959;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,19:184:99:107,0,962 chrIX 393028 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=122.2622;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=1;QD=12.09;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1725,201,0 chrIX 393067 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=178;Dels=0.00;FS=2.895;HaplotypeScore=6.9942;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;MQRankSum=-0.849;QD=16.32;ReadPosRankSum=2.422;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:2938,342,0 chrIX 393106 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=26.7080;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=19.72;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3964,459,0 chrIX 393177 . G T 4149.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=22.80;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4149,462,0 chrIX 393181 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.06;MQ0=0;QD=21.77;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3853,435,0 chrIX 393280 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=21.87;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4221,489,0 chrIX 393373 . G A 4957.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=22.03;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4957,584,0 chrIX 393403 . C T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;QD=19.12;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4016,459,0 chrIX 393406 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=17.95;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3787,452,0 chrIX 393415 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=200;Dels=0.00;FS=3.028;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;MQRankSum=-1.971;QD=15.82;ReadPosRankSum=2.413;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3197,386,0 chrIX 393438 . T C 2435 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=14.08;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2468,288,0 chrIX 393451 . T C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=172;Dels=0.00;FS=10.490;HaplotypeScore=1.5678;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;MQRankSum=2.747;QD=12.90;ReadPosRankSum=2.959;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:2251,273,0 chrIX 393475 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;QD=14.56;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2493,294,0 chrIX 393498 . G C 2357 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=15.41;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2390,282,0 chrIX 393505 . A G 2062 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=137;Dels=0.00;FS=2.469;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;MQRankSum=-2.537;QD=15.05;ReadPosRankSum=2.949;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2095,246,0 chrIX 393508 . T C 1961 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=5.740;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;MQRankSum=1.399;QD=14.53;ReadPosRankSum=1.706;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:1994,231,0 chrIX 393511 . C T 1921 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=14.44;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1954,225,0 chrIX 393588 . C A 140.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.201;DP=124;Dels=0.00;FS=6.784;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;MQRankSum=-1.285;QD=1.13;ReadPosRankSum=-0.922;SB=-6.381e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:1:169,1,0 chrIX 393592 . T A 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=6.463;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;MQRankSum=0.531;QD=18.98;ReadPosRankSum=1.704;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2406,288,0 chrIX 393622 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5952;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=20.81;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3133,357,0 chrIX 393711 . T A 1718 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.04;FS=0.000;HaplotypeScore=80.4144;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=23.22;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1751,195,0 chrIX 393745 . T G 470 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-1.362;QD=16.79;ReadPosRankSum=1.362;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:60:503,60,0 chrIX 393746 . A T 434 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;MQRankSum=0.694;QD=16.07;ReadPosRankSum=2.176;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:2,25:27:57:467,57,0 chrIX 393749 . A G 451 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=14.55;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:57:484,57,0 chrIX 393765 . G A 364 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=11.74;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:45:397,45,0 chrIX 393785 . A G 294 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=8.91;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:39:327,39,0 chrIX 393808 . C T 660 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=45.3947;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=11.38;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:84:693,84,0 chrIX 393821 . T C 843 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=11.09;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:876,99,0 chrIX 393829 . T C 1147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.393;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;MQRankSum=-1.148;QD=13.82;ReadPosRankSum=1.690;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1180,138,0 chrIX 393862 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=18.48;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1918,228,0 chrIX 393908 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=1.696;QD=13.80;ReadPosRankSum=1.696;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1372,162,0 chrIX 393931 . T A 721 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=9.61;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:84:754,84,0 chrIX 393945 . C T 758 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=9.13;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,81:83:87:791,87,0 chrIX 393951 . C T 734 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=8.53;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:87:767,87,0 chrIX 393959 . C T 810 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=8.44;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:96:843,96,0 chrIX 393964 . G A 898 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=9.16;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:931,108,0 chrIX 393982 . G T 1133 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;QD=10.12;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1166,135,0 chrIX 393984 . T C 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;MQRankSum=-1.643;QD=9.25;ReadPosRankSum=1.702;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1106,132,0 chrIX 394214 . G A 4896.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.31;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:4896,543,0 chrIX 394553 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.9987;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.98;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1831,213,0 chrIX 394650 . T C 2419 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=21.22;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2452,282,0 chrIX 394651 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=21.85;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2436,285,0 chrIX 394739 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.03;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.25;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1572,186,0 chrIX 394847 . T C 956 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=16.20;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:989,114,0 chrIX 395011 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.68;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2101,243,0 chrIX 395073 . C A 1827 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=18.27;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1860,210,0 chrIX 395123 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-0.079;QD=16.54;ReadPosRankSum=1.637;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1836,213,0 chrIX 395125 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=16.02;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:1843,213,0 chrIX 395260 . A G 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=7.117;HaplotypeScore=8.9242;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-1.422;QD=20.62;ReadPosRankSum=2.345;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3423,405,0 chrIX 395275 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.37;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3238,369,0 chrIX 395469 . T C 2857 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.26;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2890,339,0 chrIX 395477 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=20.81;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2676,303,0 chrIX 395486 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.565;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=0.097;QD=20.46;ReadPosRankSum=1.704;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2590,297,0 chrIX 395522 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.55;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3180,369,0 chrIX 395890 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.15;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2802,315,0 chrIX 395916 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.19;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2740,306,0 chrIX 396078 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=3.4050;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.95;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2673,303,0 chrIX 396079 . A T 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.979;HaplotypeScore=3.4050;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.651;QD=20.90;ReadPosRankSum=1.594;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2666,300,0 chrIX 396138 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.71;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2540,294,0 chrIX 396434 . C G 2650 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.6253;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.49;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2683,321,0 chrIX 396592 . T G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=3.203;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.216;QD=18.73;ReadPosRankSum=1.689;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3049,360,0 chrIX 396602 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.68;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:2907,333,0 chrIX 396753 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.6752;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.31;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2995,330,0 chrIX 396988 . T A 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.267;QD=22.42;ReadPosRankSum=1.692;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3924,459,0 chrIX 397063 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=2.996;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.172;QD=21.49;ReadPosRankSum=2.413;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2955,339,0 chrIX 397249 . A G 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=125;Dels=0.00;FS=3.023;HaplotypeScore=16.5111;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.207;QD=20.91;ReadPosRankSum=2.371;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2647,312,0 chrIX 397647 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.50;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3645,420,0 chrIX 397671 . G T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.62;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3981,447,0 chrIX 397968 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.054;QD=21.13;ReadPosRankSum=1.677;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3994,459,0 chrIX 397974 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.62;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3855,447,0 chrIX 398130 . C A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.5186;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.15;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4606,516,0 chrIX 398246 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=171;Dels=0.00;FS=7.795;HaplotypeScore=10.0227;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.093;QD=20.93;ReadPosRankSum=2.406;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3579,408,0 chrIX 398409 . G A 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.851;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.953;QD=18.76;ReadPosRankSum=1.076;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3203,339,0 chrIX 398410 . A T 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=9.029;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.916;QD=18.31;ReadPosRankSum=3.124;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3091,338,0 chrIX 398482 . T G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.898;QD=18.78;ReadPosRankSum=1.707;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2644,312,0 chrIX 398655 . T A 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=155;Dels=0.01;FS=3.125;HaplotypeScore=14.1189;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.517;QD=22.95;ReadPosRankSum=1.710;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3557,405,0 chrIX 398957 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.3234;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.97;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4194,486,0 chrIX 399062 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.55;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3637,411,0 chrIX 399357 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=19.34;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3011,339,0 chrIX 399370 . A C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;MQRankSum=-1.314;QD=17.40;ReadPosRankSum=1.709;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2625,300,0 chrIX 399384 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=15.80;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2324,255,0 chrIX 399393 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;QD=12.22;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1670,195,0 chrIX 399396 . T A 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;MQRankSum=-1.603;QD=11.75;ReadPosRankSum=1.655;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:1608,183,0 chrIX 399414 . A G 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=117;Dels=0.00;FS=3.455;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;MQRankSum=-1.119;QD=9.54;ReadPosRankSum=1.640;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,112:117:99:1149,138,0 chrIX 399415 . G A 1162 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=9.85;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:1195,138,0 chrIX 399449 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=15.72;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2202,255,0 chrIX 399532 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.96;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2926,330,0 chrIX 399657 . A C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.529;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=1.342;QD=23.23;ReadPosRankSum=1.710;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3716,429,0 chrIX 400004 . G A 2056 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.452;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=29.4976;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;MQRankSum=0.824;QD=8.13;ReadPosRankSum=3.022;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:10,243:253:99:2089,240,0 chrIX 400007 . T A 1796 SnpCluster AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=166.9196;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=7.39;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,223:243:99:1829,207,0 chrIX 400010 . G A 1591 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.148;DP=234;Dels=0.00;FS=23.997;HaplotypeScore=581.5516;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-3.450;QD=6.80;ReadPosRankSum=4.611;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:42,192:234:99:1624,129,0 chrIX 400031 . A G 328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.437;DP=206;Dels=0.05;FS=4.310;HaplotypeScore=393.1104;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;MQRankSum=-0.646;QD=1.59;ReadPosRankSum=1.993;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:5,190:196:42:361,42,0 chrIX 400145 . C T 6488.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=8.2308;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.01;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6488,738,0 chrIX 400379 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2841,321,0 chrIX 400508 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.5927;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.51;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3399,387,0 chrIX 401147 . G C 2672 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.38;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2705,312,0 chrIX 401999 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.205;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.8262;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.819;QD=21.61;ReadPosRankSum=0.354;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4062,450,0 chrIX 402334 . A G 3166 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.59;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3199,366,0 chrIX 402341 . T A 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.464;QD=17.44;ReadPosRankSum=1.696;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3384,387,0 chrIX 402614 . C T 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.270;DP=133;Dels=0.00;FS=5.134;HaplotypeScore=10.3686;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.196;QD=18.50;ReadPosRankSum=0.736;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2494,253,0 chrIX 402823 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.33;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2020,225,0 chrIX 402884 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2364,273,0 chrIX 403261 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=177;Dels=0.00;FS=15.845;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=-1.239;QD=18.23;ReadPosRankSum=3.262;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3259,378,0 chrIX 403264 . C A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=19.56;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3364,375,0 chrIX 403289 . A G 3979.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.3251;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.70;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3979,459,0 chrIX 403324 . C T 4243.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.92;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4243,486,0 chrIX 403404 . C T 4418.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.6747;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.63;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4418,495,0 chrIX 403447 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=22.51;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4120,459,0 chrIX 403459 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.703;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.492;QD=19.04;ReadPosRankSum=1.623;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:3675,423,0 chrIX 403476 . G C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=18.58;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3660,426,0 chrIX 403564 . A G 4953.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.6835;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.26;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4953,570,0 chrIX 403760 . A G 4536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=217;Dels=0.00;FS=2.929;HaplotypeScore=13.4054;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.639;QD=20.90;ReadPosRankSum=2.392;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4536,522,0 chrIX 403814 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=193;Dels=0.00;FS=6.135;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.106;QD=21.43;ReadPosRankSum=2.398;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4136,494,0 chrIX 403850 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3661,429,0 chrIX 403943 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.52;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4283,483,0 chrIX 403997 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.2697;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.81;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4585,513,0 chrIX 404225 . A G 5093.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=7.4192;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.37;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5093,599,0 chrIX 404489 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.15;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4314,512,0 chrIX 404597 . C G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.9281;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.77;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4303,495,0 chrIX 404631 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.100;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6539;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.367;QD=20.20;ReadPosRankSum=2.316;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3716,438,0 chrIX 404644 . C A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.28;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3682,411,0 chrIX 404738 . A T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.88;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3295,375,0 chrIX 404802 . A G 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=205;Dels=0.00;FS=2.976;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.361;QD=22.21;ReadPosRankSum=2.413;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4554,531,0 chrIX 405428 . T G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.732;QD=20.23;ReadPosRankSum=1.678;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3864,453,0 chrIX 405665 . T C 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=231;Dels=0.00;FS=3.222;HaplotypeScore=18.0124;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.567;QD=21.82;ReadPosRankSum=1.702;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5041,585,0 chrIX 405821 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.7820;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.44;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4803,543,0 chrIX 405945 . A G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=2.803;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.586;QD=20.61;ReadPosRankSum=2.367;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3104,360,0 chrIX 405973 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.54;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2950,330,0 chrIX 406001 . T A 2423 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.36;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2456,285,0 chrIX 406129 . T A 1261 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=18.01;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1294,147,0 chrIX 406173 . A G 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;MQRankSum=-0.866;QD=15.78;ReadPosRankSum=2.352;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:96:822,96,0 chrIX 406184 . G T 699 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=16.64;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:732,84,0 chrIX 406186 . G C 684 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=16.29;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:84:717,84,0 chrIX 406315 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.01;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2530,282,0 chrIX 406344 . T A 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.414;QD=22.17;ReadPosRankSum=1.671;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2538,285,0 chrIX 406436 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.163;DP=148;Dels=0.00;FS=4.970;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.101;QD=21.85;ReadPosRankSum=3.400;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3269,384,0 chrIX 406505 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.25;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5138,573,0 chrIX 406590 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.1301;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.390;QD=18.06;ReadPosRankSum=1.717;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4209,498,0 chrIX 406596 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.3726;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=17.70;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4301,486,0 chrIX 406850 . C G 5727.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=19.8162;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.29;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5727,666,0 chrIX 407228 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.3152;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.78;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3986,447,0 chrIX 407301 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.64;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2716,306,0 chrIX 407603 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.2744;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.65;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3507,414,0 chrIX 408110 . T G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=164;Dels=0.00;FS=5.728;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-1.423;QD=21.00;ReadPosRankSum=2.957;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3444,411,0 chrIX 408214 . G C 2526 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.78;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2559,294,0 chrIX 408398 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.80;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2974,333,0 chrIX 408461 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.4073;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.40;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4049,453,0 chrIX 408521 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.81;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2907,333,0 chrIX 408614 . C T 4856.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.04;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4856,564,0 chrIX 408665 . C T 4347.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.70;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4347,495,0 chrIX 408674 . A G 4500.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2456;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.13;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4500,522,0 chrIX 409106 . A T 2911 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2201;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.80;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2944,348,0 chrIX 409382 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.042;QD=21.39;ReadPosRankSum=1.704;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2750,318,0 chrIX 409472 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.048;QD=20.73;ReadPosRankSum=1.641;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3184,375,0 chrIX 409769 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.95;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3457,402,0 chrIX 409802 . T C 2831 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.9968;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.51;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:2864,333,0 chrIX 409928 . G T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.84;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3975,459,0 chrIX 410111 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4294,501,0 chrIX 410327 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=4.618;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.358;QD=21.14;ReadPosRankSum=1.707;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2971,357,0 chrIX 410521 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=158;Dels=0.00;FS=4.106;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.320;QD=21.55;ReadPosRankSum=1.710;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3405,393,0 chrIX 410647 . A G 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.259;QD=18.71;ReadPosRankSum=2.399;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2802,321,0 chrIX 410784 . T C 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.365;QD=21.87;ReadPosRankSum=1.706;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2920,342,0 chrIX 411171 . G A 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.8333;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.242;QD=22.70;ReadPosRankSum=1.368;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:5039,546,0 chrIX 411481 . T A 5878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=253;Dels=0.00;FS=2.891;HaplotypeScore=13.1540;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.665;QD=23.23;ReadPosRankSum=2.420;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:5878,663,0 chrIX 411637 . T C 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=4.398;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.307;QD=20.37;ReadPosRankSum=1.699;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4339,524,0 chrIX 411875 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=21.21;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1878,210,0 chrIX 411881 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=19.77;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1832,207,0 chrIX 411892 . G C 1698 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=19.08;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1731,201,0 chrIX 412084 . A G 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=5.119;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.057;QD=22.79;ReadPosRankSum=1.694;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2107,243,0 chrIX 412153 . A T 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.646;QD=22.37;ReadPosRankSum=1.703;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2673,300,0 chrIX 412186 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.81;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2252,258,0 chrIX 412202 . T C 2172 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.93;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2205,255,0 chrIX 412260 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.53;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2142,243,0 chrIX 412303 . A G 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.201;QD=20.78;ReadPosRankSum=1.692;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1820,207,0 chrIX 412381 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.07;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1821,213,0 chrIX 412414 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.05;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2118,246,0 chrIX 412469 . T C 2347 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.77;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2380,276,0 chrIX 412588 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.09;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2308,264,0 chrIX 412596 . C T 2147 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.25;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2180,243,0 chrIX 412627 . A G 2361 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.59;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2394,285,0 chrIX 412806 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.11;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2967,330,0 chrIX 413482 . T C 4770.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=20.8972;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=1;QD=21.11;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4770,552,0 chrIX 414346 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=204;Dels=0.00;FS=3.511;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.686;QD=20.92;ReadPosRankSum=1.715;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4267,486,0 chrIX 414362 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.65;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3470,405,0 chrIX 414445 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4170,474,0 chrIX 414531 . G C 5445.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.59;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5445,636,0 chrIX 414641 . T C 5309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=233;Dels=0.00;FS=2.574;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.787;QD=22.79;ReadPosRankSum=2.396;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:3,228:233:99:5309,618,0 chrIX 414735 . C T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.8270;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.17;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5121,591,0 chrIX 414918 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8380;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.20;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3758,435,0 chrIX 414925 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.23;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3576,420,0 chrIX 415039 . A G 4629.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4629,540,0 chrIX 415093 . G A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.16;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4455,527,0 chrIX 415204 . A G 5015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=222;Dels=0.00;FS=3.028;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=2.350;QD=22.59;ReadPosRankSum=2.416;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:5015,585,0 chrIX 415367 . G C 3647.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.60;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3647,420,0 chrIX 415528 . C T 4546.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.31;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4546,519,0 chrIX 415580 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.02;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4205,462,0 chrIX 415609 . G T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4296;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.86;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3495,402,0 chrIX 415643 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.0680;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.450;QD=19.76;ReadPosRankSum=-1.349;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3576,393,0 chrIX 415834 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.00;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3675,435,0 chrIX 416053 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.23;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3673,420,0 chrIX 416240 . G A 4688.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.98;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4688,522,0 chrIX 416282 . T A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.8562;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.71;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3832,450,0 chrIX 416339 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.5838;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.61;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3483,390,0 chrIX 416543 . T C 2474 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.79;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2507,291,0 chrIX 416559 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.99;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2179,246,0 chrIX 416576 . C T 2035 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.15;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2068,234,0 chrIX 416627 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.78;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2011,234,0 chrIX 416694 . C A 1745 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1778,198,0 chrIX 417371 . T C 5261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.652;QD=22.77;ReadPosRankSum=1.642;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5261,612,0 chrIX 417395 . C T 4894.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.66;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4894,558,0 chrIX 417637 . G C 5021.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.0016;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.52;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5021,579,0 chrIX 419141 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2615,300,0 chrIX 419726 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.02;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2519,288,0 chrIX 419811 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.12;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3630,411,0 chrIX 419999 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3357,396,0 chrIX 420167 . T G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5488;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.472;QD=20.86;ReadPosRankSum=1.690;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3463,405,0 chrIX 420518 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=187;Dels=0.00;FS=3.797;HaplotypeScore=7.1093;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.010;QD=19.13;ReadPosRankSum=1.695;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3577,417,0 chrIX 420530 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.83;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3331,381,0 chrIX 420788 . C G 2777 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.36;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2810,324,0 chrIX 421206 . A G 6213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=275;Dels=0.00;FS=3.550;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.683;QD=22.59;ReadPosRankSum=1.707;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:6213,723,0 chrIX 421436 . C T 5842.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5842,686,0 chrIX 421475 . G A 5471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.160;QD=22.61;ReadPosRankSum=-0.277;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:1,237:242:99:5471,618,0 chrIX 421591 . T C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.7662;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.02;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3351,399,0 chrIX 421865 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=25.6203;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.16;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2678,309,0 chrIX 422140 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.1584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3544,408,0 chrIX 422694 . G A 4733.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=19.0241;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.16;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:4733,537,0 chrIX 422867 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=191;Dels=0.00;FS=11.202;HaplotypeScore=12.9967;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.148;QD=21.34;ReadPosRankSum=2.868;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4076,471,0 chrIX 422958 . G A 4829.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.15;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4829,543,0 chrIX 423010 . A T 4892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=208;Dels=0.00;FS=3.031;HaplotypeScore=13.5595;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.691;QD=23.52;ReadPosRankSum=2.379;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4892,546,0 chrIX 423455 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=170;Dels=0.00;FS=4.694;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.505;QD=21.14;ReadPosRankSum=1.691;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3594,417,0 chrIX 423719 . C T 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=192;Dels=0.00;FS=10.301;HaplotypeScore=10.9094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.490;QD=23.83;ReadPosRankSum=2.424;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4576,522,0 chrIX 423791 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.85;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3420,390,0 chrIX 423805 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.72;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3099,354,0 chrIX 423869 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.5238;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.59;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3788,435,0 chrIX 423908 . C T 5096.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.3770;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.69;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5096,582,0 chrIX 424027 . C A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.8289;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.42;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3431,384,0 chrIX 424253 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.92;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3924,456,0 chrIX 424438 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.4346;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.793;QD=22.03;ReadPosRankSum=1.710;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3414,393,0 chrIX 424517 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.54;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2941,342,0 chrIX 424776 . A G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=143;Dels=0.00;FS=10.918;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.220;QD=21.56;ReadPosRankSum=2.880;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3116,360,0 chrIX 424793 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.437;QD=19.75;ReadPosRankSum=1.708;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2818,330,0 chrIX 424855 . G T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.46;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3540,399,0 chrIX 424866 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.49;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3274,390,0 chrIX 424986 . G A 4556.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.48;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4556,516,0 chrIX 425023 . G T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=23.23;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3670,405,0 chrIX 425105 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.37;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2490,288,0 chrIX 425230 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=12.2455;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=13.02;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1231,138,0 chrIX 425242 . G A 359.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.317;DP=142;Dels=0.00;FS=7.699;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=34.62;MQ0=0;MQRankSum=-1.918;QD=2.53;ReadPosRankSum=-9.802;SB=-3.820e+02 GT:AD:DP:GQ:PL 0/1:82,60:142:99:389,0,121 chrIX 425281 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=10.56;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1089,123,0 chrIX 425407 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.0604;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.97;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2384,273,0 chrIX 425440 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.74;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2642,309,0 chrIX 425460 . A G 2836 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.40;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,133:139:99:2869,339,0 chrIX 425653 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.139;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.498;QD=21.24;ReadPosRankSum=0.896;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3950,409,0 chrIX 425817 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=176;Dels=0.00;FS=3.030;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.333;QD=21.43;ReadPosRankSum=2.380;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3771,435,0 chrIX 425829 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.59;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4179,474,0 chrIX 425875 . T C 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=205;Dels=0.00;FS=6.085;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.264;QD=20.59;ReadPosRankSum=2.916;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:3,199:205:99:4220,500,0 chrIX 425941 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.33;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3648,417,0 chrIX 425954 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.97;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3295,375,0 chrIX 426001 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=3.142;HaplotypeScore=7.1101;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.089;QD=19.81;ReadPosRankSum=1.649;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3308,384,0 chrIX 426032 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=142;Dels=0.00;FS=11.133;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-2.213;QD=21.38;ReadPosRankSum=2.951;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3069,360,0 chrIX 426130 . A G 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.791;QD=21.94;ReadPosRankSum=2.411;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2797,321,0 chrIX 426151 . T A 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=4.845;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=0.073;QD=21.38;ReadPosRankSum=1.587;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2577,288,0 chrIX 426152 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=22.05;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2613,291,0 chrIX 426339 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=23.92;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3445,402,0 chrIX 426465 . T A 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.383;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=1.590;QD=20.30;ReadPosRankSum=1.685;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2997,354,0 chrIX 426471 . T C 2941 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.74;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2974,348,0 chrIX 426481 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=20.91;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3023,336,0 chrIX 426557 . A G 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;MQRankSum=1.212;QD=14.56;ReadPosRankSum=1.707;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2101,240,0 chrIX 426563 . C A 1961 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=13.81;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1994,234,0 chrIX 426627 . C A 2340 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.08;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2373,267,0 chrIX 426630 . T C 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=140;Dels=0.00;FS=6.115;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.964;QD=16.85;ReadPosRankSum=2.344;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2392,276,0 chrIX 426884 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=172;Dels=0.00;FS=5.250;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.686;QD=21.78;ReadPosRankSum=3.378;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:3747,438,0 chrIX 427016 . A C 3163 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.76;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3196,378,0 chrIX 427084 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.83;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2393,279,0 chrIX 427085 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.98;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2450,279,0 chrIX 427189 . A G 2271 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.84;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2304,270,0 chrIX 427288 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=33.5700;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=15.15;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1230,144,0 chrIX 427464 . T C 3046 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.44;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3079,351,0 chrIX 427480 . C A 2892 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.66;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2925,327,0 chrIX 427526 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.24;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2842,315,0 chrIX 427584 . A C 2951 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=23.80;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2984,339,0 chrIX 427600 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=7.423;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=1.416;QD=22.41;ReadPosRankSum=2.361;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3148,363,0 chrIX 427658 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=22.18;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4259,495,0 chrIX 427791 . T C 2534 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=19.34;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2567,297,0 chrIX 427818 . G A 132.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.037;DP=108;Dels=0.00;FS=11.329;HaplotypeScore=27.6619;MLEAC=1;MLEAF=0.500;MQ=32.72;MQ0=0;MQRankSum=1.341;QD=1.22;ReadPosRankSum=-4.413;SB=-6.280e+02 GT:AD:DP:GQ:PL 0/1:27,81:108:24:162,0,24 chrIX 427825 . T A 320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.590;HaplotypeScore=22.2584;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=-1.670;QD=2.86;ReadPosRankSum=1.639;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:39:353,39,0 chrIX 427863 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=3.282;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;MQRankSum=-0.735;QD=11.38;ReadPosRankSum=1.706;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:1535,177,0 chrIX 428040 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;QD=22.31;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3067,354,0 chrIX 428049 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;MQRankSum=-0.619;QD=21.56;ReadPosRankSum=1.683;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3073,357,0 chrIX 428126 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.53;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2897,339,0 chrIX 428190 . A G 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;MQRankSum=-1.280;QD=14.17;ReadPosRankSum=1.707;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1988,234,0 chrIX 428193 . T A 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.586;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;MQRankSum=-0.240;QD=14.31;ReadPosRankSum=1.707;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1994,228,0 chrIX 428213 . A G 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;MQRankSum=-1.622;QD=11.78;ReadPosRankSum=1.705;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1517,183,0 chrIX 428221 . A T 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;MQRankSum=0.614;QD=10.91;ReadPosRankSum=1.678;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1419,168,0 chrIX 428224 . A T 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=2.954;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;MQRankSum=0.625;QD=11.71;ReadPosRankSum=2.410;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:1485,168,0 chrIX 428248 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=12.43;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1612,186,0 chrIX 428267 . T C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.926;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;MQRankSum=-1.503;QD=12.77;ReadPosRankSum=1.703;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1578,192,0 chrIX 428297 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=15.75;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1766,201,0 chrIX 428303 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=113;Dels=0.00;FS=2.981;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;MQRankSum=0.692;QD=15.59;ReadPosRankSum=2.384;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:1795,213,0 chrIX 428359 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=20.94;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2232,272,0 chrIX 428394 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.0312;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;QD=21.08;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2352,270,0 chrIX 428399 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=21.43;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2240,255,0 chrIX 428473 . T G 2070 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=20.29;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2103,246,0 chrIX 428479 . T C 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;MQRankSum=-1.732;QD=20.41;ReadPosRankSum=1.663;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2094,246,0 chrIX 428519 . A C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;MQRankSum=-0.664;QD=19.69;ReadPosRankSum=1.674;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2396,276,0 chrIX 428609 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=12.74;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1154,132,0 chrIX 428656 . C G 1458 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.8937;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=16.76;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1491,177,0 chrIX 428720 . T G 1584 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=16.50;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1617,192,0 chrIX 428722 . A G 1591 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;MQRankSum=-1.232;QD=16.40;ReadPosRankSum=1.696;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1624,198,0 chrIX 428729 . C T 1420 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3069;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=15.11;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1453,168,0 chrIX 428775 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=16.16;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1374,165,0 chrIX 428878 . C A 2245 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=20.60;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2278,264,0 chrIX 428948 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=22.91;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2416,279,0 chrIX 428983 . A C 1790 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=20.11;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1823,213,0 chrIX 429029 . G C 1096 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=12.60;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1129,135,0 chrIX 429033 . T C 1158 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-0.801;QD=12.45;ReadPosRankSum=1.695;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1191,138,0 chrIX 429037 . T C 1124 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;MQRankSum=-1.054;QD=11.59;ReadPosRankSum=1.696;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1157,135,0 chrIX 429042 . G A 1300 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=12.62;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1333,147,0 chrIX 429103 . A G 1721 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;MQRankSum=-1.657;QD=12.47;ReadPosRankSum=-0.151;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1754,191,0 chrIX 429107 . C T 1931 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=13.32;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1964,222,0 chrIX 429113 . T C 2090 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=13.57;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2123,246,0 chrIX 429153 . A G 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.537;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.435;QD=16.42;ReadPosRankSum=1.707;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2332,270,0 chrIX 429223 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1415;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=22.84;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2751,321,0 chrIX 429241 . T G 2580 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=20.81;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2613,312,0 chrIX 429457 . C G 2966 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.34;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2999,345,0 chrIX 429462 . T A 3078 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=21.68;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3111,345,0 chrIX 429465 . G A 2863 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=20.45;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2896,339,0 chrIX 429794 . A G 1661 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1694,195,0 chrIX 430005 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=26.5801;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=22.87;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2617,291,0 chrIX 430247 . G C 3462.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.0110;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.49;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,164:169:99:3462,399,0 chrIX 430585 . G A 2106 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.70;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2139,261,0 chrIX 431439 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=168;Dels=0.00;FS=2.442;HaplotypeScore=7.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.139;QD=23.52;ReadPosRankSum=2.934;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3951,459,0 chrIX 431755 . T C 5385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=250;Dels=0.00;FS=3.300;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=1;MQRankSum=0.922;QD=21.54;ReadPosRankSum=1.620;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5385,635,0 chrIX 431988 . A C 2705 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=153;Dels=0.00;FS=6.110;HaplotypeScore=10.7523;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=6;MQRankSum=-2.433;QD=17.68;ReadPosRankSum=2.416;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2738,315,0 chrIX 432102 . T A 689 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=19.90;MQ0=20;QD=8.51;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:84:722,84,0 chrIX 432505 . G A 1849 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;DP=113;Dels=0.00;FS=1.558;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=13;MQRankSum=1.304;QD=16.36;ReadPosRankSum=2.559;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:11,101:113:99:1882,109,0 chrIX 432591 . T C 3151 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=147;Dels=0.00;FS=2.729;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=7;MQRankSum=0.781;QD=21.44;ReadPosRankSum=2.362;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3184,369,0 chrIX 432981 . G A 138.13 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=9;QD=6.01;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:18:171,18,0 chrIX 433072 . G A 1468 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=8;QD=14.98;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1501,174,0 chrIX 433108 . A T 1534.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;DP=143;Dels=0.01;FS=2.239;HaplotypeScore=24.8355;MLEAC=1;MLEAF=0.500;MQ=42.13;MQ0=5;MQRankSum=7.946;QD=10.73;ReadPosRankSum=-0.972;SB=-8.050e+02 GT:AD:DP:GQ:PL 0/1:53,89:142:99:1564,0,406 chrIX 433113 . A C 396.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.181;DP=138;Dels=0.00;FS=0.663;HaplotypeScore=11.3657;MLEAC=1;MLEAF=0.500;MQ=42.82;MQ0=2;MQRankSum=-8.347;QD=2.87;ReadPosRankSum=1.783;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:84,52:138:99:426,0,1579 chrIX 433180 . A G 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;DP=80;Dels=0.00;FS=2.605;HaplotypeScore=7.3512;MLEAC=1;MLEAF=0.500;MQ=31.73;MQ0=4;MQRankSum=-2.001;QD=1.46;ReadPosRankSum=-3.394;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:54,26:80:99:147,0,849 chrIX 433189 . G T 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=31.61;MQ0=4;MQRankSum=-2.655;QD=0.73;ReadPosRankSum=-3.229;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,16:64:77:77,0,769 chrIX 433213 . G A 697 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=6;QD=15.15;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:730,90,0 chrIX 433253 . G A 884 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=5;QD=17.00;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:917,105,0 chrIX 433284 . T C 1468 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=5;QD=16.49;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,76:89:99:1501,174,0 chrIX 433660 . A G 926 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.0116;MLEAC=2;MLEAF=1.00;MQ=15.85;MQ0=17;MQRankSum=-1.696;QD=5.68;ReadPosRankSum=2.643;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:10,153:163:88:959,88,0 chrIX 433724 . A T 209 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.65;MQ0=24;QD=4.18;SB=-2.600e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:30:242,30,0 chrIX 433783 . C T 75.51 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.46;MQ0=19;QD=1.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:12:108,12,0 chrIX 433902 . T C 55.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.500;MQ=14.99;MQ0=4;MQRankSum=2.208;QD=2.52;ReadPosRankSum=-0.971;SB=-4.058e-01 GT:AD:DP:GQ:PL 0/1:9,13:22:7:85,0,7 chrIX 433927 . T C 85.26 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.29;MQ0=7;QD=3.71;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:15:118,15,0 chrIX 433964 . C T 64.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=15;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=6;MQRankSum=0.751;QD=4.30;ReadPosRankSum=-0.751;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:4,11:15:12:97,12,0 chrIX 434207 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrIX 434210 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrIX 434222 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrIX 437271 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.35;MQ0=3;QD=5.12;SB=-2.521e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:73,9,0 chrIX 437295 . T C 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.019;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.76;MQ0=4;MQRankSum=1.364;QD=1.44;ReadPosRankSum=2.237;SB=-4.696e+01 GT:AD:DP:GQ:PL 1/1:2,25:27:9:71,9,0 chrIX 437484 . C A 206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.327;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.01;MQ0=0;MQRankSum=0.306;QD=12.12;ReadPosRankSum=0.919;SB=-7.395e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:30:239,30,0 chrIX 437504 . G A 268.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.859;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.2839;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=6;MQRankSum=-0.630;QD=6.38;ReadPosRankSum=1.603;SB=-7.504e+01 GT:AD:DP:GQ:PL 1/1:3,39:42:5:299,5,0 chrIX 437544 . T C 375 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=69;Dels=0.00;FS=7.160;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.25;MQ0=17;MQRankSum=-0.333;QD=5.43;ReadPosRankSum=1.666;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:51:408,51,0 chrIX 437662 . A G 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.93;MQ0=27;MQRankSum=0.727;QD=1.55;ReadPosRankSum=-0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:16,14:31:9:80,9,0 chrIX 437732 . C T 40.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=7.56;MQ0=58;MQRankSum=1.422;QD=0.60;ReadPosRankSum=-0.573;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,21:67:11:70,0,11 chrIX 437745 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.26;MQ0=47;QD=0.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:9:73,9,0 chrIX 437755 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.93;MQ0=40;QD=0.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:46:6:50,6,0 chrIX 437810 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=13.47;MQ0=7;QD=2.47;SB=-2.747e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:74,9,0 chrIX 437819 . T C 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.434;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=8.0327;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=5;MQRankSum=0.283;QD=1.77;ReadPosRankSum=2.887;SB=-2.391e+01 GT:AD:DP:GQ:PL 1/1:4,17:22:9:71,9,0 chrIX 437840 . C T 156.03 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=4;QD=3.39;SB=-2.404e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:24:189,24,0 chrIX 437853 . A C 301 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.56;MQ0=2;QD=4.30;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:42:334,42,0 chrIX 437869 . G A 269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DP=99;Dels=0.00;FS=5.888;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.89;MQ0=2;MQRankSum=-0.153;QD=2.72;ReadPosRankSum=-2.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,72:99:94:299,0,94 chrIX 437889 . G A 538 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=20.8751;MLEAC=2;MLEAF=1.00;MQ=21.16;MQ0=0;QD=5.03;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,107:107:69:571,69,0 chrIX 437892 . C T 346.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.625;DP=108;Dels=0.00;FS=6.185;HaplotypeScore=20.8751;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=0;MQRankSum=-0.183;QD=3.20;ReadPosRankSum=-3.992;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:26,82:108:61:376,0,61 chrIX 437902 . G A 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=37.0055;MLEAC=2;MLEAF=1.00;MQ=20.34;MQ0=0;QD=1.64;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,46:46:15:108,15,0 chrIX 437905 . T G 73.35 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.159;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=25.3113;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=0;MQRankSum=0.446;QD=1.59;ReadPosRankSum=2.850;SB=18.65 GT:AD:DP:GQ:PL 0/1:11,25:46:22:103,0,22 chrIX 437908 . C T 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.220;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=25.3113;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=0;MQRankSum=0.397;QD=1.59;ReadPosRankSum=4.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,25:46:78:103,0,78 chrIX 437913 . A G 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.507;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=30.1627;MLEAC=1;MLEAF=0.500;MQ=20.47;MQ0=0;MQRankSum=-0.190;QD=1.66;ReadPosRankSum=4.312;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,25:44:78:103,0,78 chrIX 437914 . A G 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.843;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=30.1627;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=0;MQRankSum=-0.538;QD=1.79;ReadPosRankSum=3.921;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:17,25:42:41:105,0,41 chrIX 437917 . A G 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=20.3946;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=0;MQRankSum=0.334;QD=1.88;ReadPosRankSum=3.247;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:16,25:41:41:107,0,41 chrIX 437919 . G T 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=20.3946;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=0;MQRankSum=0.274;QD=1.71;ReadPosRankSum=2.644;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:7,25:41:41:100,0,41 chrIX 437921 . G A 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=14.5698;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=0;MQRankSum=0.227;QD=1.68;ReadPosRankSum=2.766;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:16,25:41:41:99,0,41 chrIX 437923 . A G 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.666;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=14.5698;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=0;MQRankSum=0.531;QD=1.78;ReadPosRankSum=2.570;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:15,25:40:41:101,0,41 chrIX 437926 . A G 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=13.5964;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=0;MQRankSum=-0.220;QD=1.90;ReadPosRankSum=2.093;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:14,25:39:41:104,0,41 chrIX 437929 . G A 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=13.5964;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=0;MQRankSum=0.462;QD=1.87;ReadPosRankSum=1.723;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:13,25:38:41:101,0,41 chrIX 437931 . T C 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.554;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=7.7716;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=0;MQRankSum=0.554;QD=1.95;ReadPosRankSum=1.723;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:13,25:38:41:104,0,41 chrIX 437948 . G T 102.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.349;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=50.0485;MLEAC=2;MLEAF=1.00;MQ=21.77;MQ0=0;MQRankSum=0.564;QD=3.30;ReadPosRankSum=-2.444;SB=2.82 GT:AD:DP:GQ:PL 1/1:5,26:31:15:135,15,0 chrIX 437952 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.230;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=21.29;MQ0=0;MQRankSum=0.410;QD=2.00;ReadPosRankSum=-1.752;SB=2.03 GT:AD:DP:GQ:PL 1/1:5,18:23:9:78,9,0 chrIX 437955 . A C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.027;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.5808;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=0;MQRankSum=0.690;QD=2.39;ReadPosRankSum=-2.071;SB=2.08 GT:AD:DP:GQ:PL 1/1:4,14:18:9:75,9,0 chrIX 438045 . C G 296.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.203;DP=76;Dels=0.00;FS=9.673;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=18.82;MQ0=3;MQRankSum=-1.700;QD=3.89;ReadPosRankSum=-3.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,56:76:99:326,0,176 chrIX 438049 . T G 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=93;Dels=0.00;FS=11.781;HaplotypeScore=6.4326;MLEAC=1;MLEAF=0.500;MQ=19.93;MQ0=3;MQRankSum=0.976;QD=1.31;ReadPosRankSum=4.459;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,19:93:99:152,0,496 chrIX 438051 . A C 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.102;DP=109;Dels=0.00;FS=9.121;HaplotypeScore=7.2212;MLEAC=1;MLEAF=0.500;MQ=19.83;MQ0=3;MQRankSum=1.257;QD=1.18;ReadPosRankSum=4.058;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,20:109:99:159,0,630 chrIX 438057 . A G 177.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.748;DP=131;Dels=0.00;FS=13.494;HaplotypeScore=4.5538;MLEAC=1;MLEAF=0.500;MQ=19.93;MQ0=3;MQRankSum=1.430;QD=1.35;ReadPosRankSum=1.142;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,28:131:99:207,0,711 chrIX 438093 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3196;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=3;QD=8.99;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1319,162,0 chrIX 438101 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.82;MQ0=1;QD=8.41;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:1151,141,0 chrIX 438138 . C T 84.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;DP=76;Dels=0.00;FS=10.339;HaplotypeScore=39.5279;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=0;MQRankSum=1.490;QD=1.11;ReadPosRankSum=-0.157;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:52,20:76:99:114,0,291 chrIX 438140 . C T 61.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;DP=68;Dels=0.00;FS=12.575;HaplotypeScore=40.8552;MLEAC=1;MLEAF=0.500;MQ=20.26;MQ0=0;MQRankSum=-1.440;QD=0.90;ReadPosRankSum=-2.508;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:25,38:68:91:91,0,176 chrIX 438270 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.44;MQ0=1;QD=0.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:6:43,6,0 chrIX 438283 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=14.0577;MLEAC=2;MLEAF=1.00;MQ=11.72;MQ0=1;QD=0.42;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:6:43,6,0 chrIX 438431 . G T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=0;QD=0.51;SB=-2.374e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:6:51,6,0 chrIX 438435 . A G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=0;QD=0.37;SB=-2.374e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:6:45,6,0 chrIX 438443 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.57;MQ0=0;QD=0.54;SB=-2.374e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:6:51,6,0 chrIX 438445 . C T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.57;MQ0=0;QD=0.56;SB=-2.374e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:6:52,6,0 chrIX 438449 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.90;MQ0=0;QD=0.41;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:6:49,6,0 chrIX 438482 . G A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=0;QD=0.74;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:6:58,6,0 chrIX 438600 . T C 278.77 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=70;Dels=0.00;FS=13.092;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.79;MQ0=13;MQRankSum=-1.791;QD=3.98;ReadPosRankSum=-0.166;SB=-1.777e+01 GT:AD:DP:GQ:PL 0/1:12,58:70:0:307,0,0 chrIX 438620 . T C 564.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;DP=98;Dels=0.00;FS=34.065;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=13;MQRankSum=-2.607;QD=5.76;ReadPosRankSum=1.166;SB=-3.356e+02 GT:AD:DP:GQ:PL 0/1:13,85:98:5:594,0,5 chrIX 438622 . G T 786 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=13;QD=7.63;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:90:819,90,0 chrIX 438696 . T C 172.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.16;MQ0=0;QD=6.14;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,23:28:27:205,27,0 chrIX 438699 . T A 129.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=0;QD=11.73;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:162,21,0 chrIX 438700 . G A 129.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.55;MQ0=0;QD=14.34;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:162,21,0 chrIX 438714 . T C 54.51 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.65;MQ0=0;QD=9.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:87,12,0 chrIX 438782 . C T 249.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;DP=30;Dels=0.00;FS=4.054;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=29.23;MQ0=0;MQRankSum=-0.905;QD=8.30;ReadPosRankSum=0.588;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:9,21:30:99:279,0,124 chrIX 438797 . C T 142.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;DP=44;Dels=0.00;FS=7.356;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=0;MQRankSum=-0.844;QD=3.23;ReadPosRankSum=0.410;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:27,17:44:99:172,0,433 chrIX 438812 . T C 164.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=52;Dels=0.00;FS=6.929;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=0.114;QD=3.15;ReadPosRankSum=1.368;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:33,19:52:99:194,0,528 chrIX 438837 . G T 654.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.657;DP=64;Dels=0.00;FS=10.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.86;MQ0=0;MQRankSum=-0.760;QD=10.22;ReadPosRankSum=0.717;SB=-2.050e+02 GT:AD:DP:GQ:PL 0/1:20,44:64:99:684,0,280 chrIX 438856 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=20.17;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1243,144,0 chrIX 438872 . A G 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=46;Dels=0.00;FS=26.290;HaplotypeScore=13.5887;MLEAC=1;MLEAF=0.500;MQ=26.94;MQ0=0;MQRankSum=0.103;QD=2.35;ReadPosRankSum=1.185;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,11:46:99:138,0,395 chrIX 438878 . T A 453 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=7.8352;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=0;QD=15.62;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:60:486,60,0 chrIX 438881 . A G 211.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350;DP=24;Dels=0.00;FS=39.829;HaplotypeScore=7.8352;MLEAC=1;MLEAF=0.500;MQ=23.48;MQ0=0;MQRankSum=-1.715;QD=8.79;ReadPosRankSum=-0.699;SB=-1.902e+01 GT:AD:DP:GQ:PL 0/1:7,17:24:99:241,0,121 chrIX 438884 . G A 382 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=7.8325;MLEAC=2;MLEAF=1.00;MQ=24.27;MQ0=0;QD=18.19;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:415,51,0 chrIX 438909 . A T 83.26 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=13.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:15:116,15,0 chrIX 438915 . C T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=5.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:47,6,0 chrIX 438993 . A G 582 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=0;QD=17.64;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:615,75,0 chrIX 439033 . C A 693 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=0;QD=17.77;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:726,87,0 chrIX 439034 . A G 689 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=0;QD=17.67;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:722,87,0 chrIX 439037 . A G 495.06 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;DP=39;Dels=0.00;FS=43.459;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=0;MQRankSum=-0.016;QD=12.69;ReadPosRankSum=-0.296;SB=-1.501e+02 GT:AD:DP:GQ:PL 0/1:11,28:39:16:525,0,16 chrIX 439063 . T C 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;DP=36;Dels=0.00;FS=35.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.46;MQ0=0;MQRankSum=4.446;QD=2.69;ReadPosRankSum=1.930;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,12:36:99:127,0,243 chrIX 439068 . T C 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.229;DP=37;Dels=0.00;FS=36.364;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=0;MQRankSum=4.374;QD=2.59;ReadPosRankSum=-0.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,13:37:99:126,0,241 chrIX 439072 . A T 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.484;DP=37;Dels=0.00;FS=36.364;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=0;MQRankSum=4.311;QD=1.92;ReadPosRankSum=-2.052;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,13:37:99:101,0,234 chrIX 439081 . T G 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;DP=30;Dels=0.00;FS=17.732;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=0;MQRankSum=3.240;QD=0.93;ReadPosRankSum=-1.892;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,6:30:58:58,0,234 chrIX 439083 . C A 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;DP=30;Dels=0.00;FS=17.732;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=0;MQRankSum=3.189;QD=1.03;ReadPosRankSum=-2.566;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,6:30:61:61,0,221 chrIX 439084 . G T 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;DP=30;Dels=0.00;FS=17.732;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=0;MQRankSum=3.240;QD=0.97;ReadPosRankSum=-2.826;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,6:30:59:59,0,230 chrIX 439087 . A C 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454;DP=30;Dels=0.00;FS=17.732;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=0;MQRankSum=2.858;QD=1.07;ReadPosRankSum=-2.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,5:30:62:62,0,247 chrIX 439088 . A T 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;DP=30;Dels=0.00;FS=17.732;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=0;MQRankSum=3.189;QD=0.93;ReadPosRankSum=-3.137;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,6:30:58:58,0,230 chrIX 439097 . G A 328 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=0;QD=11.31;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:42:361,42,0 chrIX 439099 . A G 203.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.223;DP=29;Dels=0.00;FS=17.732;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=0;MQRankSum=-2.973;QD=7.00;ReadPosRankSum=2.050;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:5,24:29:31:233,0,31 chrIX 439102 . A T 209.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DP=29;Dels=0.00;FS=17.732;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=0;MQRankSum=-2.916;QD=7.21;ReadPosRankSum=1.934;SB=-4.303e+01 GT:AD:DP:GQ:PL 0/1:5,24:29:20:239,0,20 chrIX 439126 . A G 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;DP=31;Dels=0.00;FS=9.947;HaplotypeScore=8.8586;MLEAC=1;MLEAF=0.500;MQ=18.24;MQ0=0;MQRankSum=-0.560;QD=8.15;ReadPosRankSum=1.444;SB=-4.380e+01 GT:AD:DP:GQ:PL 0/1:4,27:31:0:281,0,0 chrIX 439132 . A G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;DP=32;Dels=0.00;FS=25.342;HaplotypeScore=11.2247;MLEAC=1;MLEAF=0.500;MQ=18.20;MQ0=0;MQRankSum=1.588;QD=1.28;ReadPosRankSum=0.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,8:32:71:71,0,242 chrIX 439158 . T G 62.51 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=0;QD=7.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:12:95,12,0 chrIX 439163 . A T 62.51 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=0;QD=7.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:12:95,12,0 chrIX 439169 . G A 29.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=0;MQRankSum=-0.747;QD=3.64;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:1,7:8:15:59,0,15 chrIX 439186 . C T 27.12 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=0;MQRankSum=-0.747;QD=3.39;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:1,7:8:13:57,0,13 chrIX 439188 . T C 28.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=0;MQRankSum=-0.747;QD=3.51;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:1,7:8:14:58,0,14 chrIX 439202 . T C 35.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.43;MQ0=0;QD=4.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:68,9,0 chrIX 439323 . A G 347 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=19.2748;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=12;MQRankSum=3.628;QD=2.80;ReadPosRankSum=-2.901;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:9,115:124:32:380,32,0 chrIX 439331 . C T 404 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=35.6352;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=12;QD=2.89;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,140:140:54:437,54,0 chrIX 439332 . A G 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.898;DP=155;Dels=0.00;FS=5.268;HaplotypeScore=35.6352;MLEAC=1;MLEAF=0.500;MQ=23.29;MQ0=12;MQRankSum=-1.888;QD=1.87;ReadPosRankSum=3.821;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:54,101:155:52:320,0,52 chrIX 439358 . T A 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.593;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=256.5001;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=9;MQRankSum=5.092;QD=0.67;ReadPosRankSum=-1.446;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,48:228:99:183,0,535 chrIX 439359 . T A 211.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.062;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=254.2292;MLEAC=1;MLEAF=0.500;MQ=24.05;MQ0=9;MQRankSum=5.025;QD=0.91;ReadPosRankSum=-0.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,55:232:99:241,0,495 chrIX 439392 . G A 625.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.502;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=22.4898;MLEAC=1;MLEAF=0.500;MQ=24.51;MQ0=3;MQRankSum=3.859;QD=2.79;ReadPosRankSum=-3.564;SB=0.631 GT:AD:DP:GQ:PL 0/1:30,194:224:64:655,0,64 chrIX 439445 . T C 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.833;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=15.4270;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=0;MQRankSum=-1.325;QD=0.82;ReadPosRankSum=3.034;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,34:98:99:110,0,178 chrIX 439447 . C T 147.11 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=24.0668;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=0;MQRankSum=2.959;QD=1.84;ReadPosRankSum=3.520;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:8,72:80:13:177,0,13 chrIX 439448 . C A 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.378;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=21.1466;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=0;MQRankSum=-1.352;QD=1.14;ReadPosRankSum=-0.086;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:37,34:79:62:120,0,62 chrIX 439463 . T G 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=36.4671;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=-1.387;QD=0.52;ReadPosRankSum=0.943;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:33,36:69:33:66,0,33 chrIX 439465 . A G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=45.2960;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=-1.508;QD=0.45;ReadPosRankSum=1.099;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:33,36:69:32:61,0,32 chrIX 439467 . A G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=45.2960;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=-1.411;QD=0.49;ReadPosRankSum=1.159;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:33,36:69:33:64,0,33 chrIX 439542 . A G 4258.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.579;DP=373;Dels=0.00;FS=18.693;HaplotypeScore=16.8388;MLEAC=1;MLEAF=0.500;MQ=23.87;MQ0=36;MQRankSum=4.930;QD=11.42;ReadPosRankSum=11.789;SB=-1.601e+03 GT:AD:DP:GQ:PL 0/1:99,273:373:99:4258,0,685 chrIX 439573 . T C 3812.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247;DP=478;Dels=0.00;FS=76.492;HaplotypeScore=117.9862;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=34;MQRankSum=2.449;QD=7.97;ReadPosRankSum=-6.616;SB=-1.359e+03 GT:AD:DP:GQ:PL 0/1:215,263:478:99:3812,0,2504 chrIX 439574 . A G 2481.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.039;DP=480;Dels=0.00;FS=78.591;HaplotypeScore=135.7926;MLEAC=1;MLEAF=0.500;MQ=23.42;MQ0=34;MQRankSum=0.834;QD=5.17;ReadPosRankSum=7.718;SB=-6.690e+02 GT:AD:DP:GQ:PL 0/1:263,217:480:99:2511,0,3763 chrIX 439583 . C G 853.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;DP=493;Dels=0.00;FS=388.270;HaplotypeScore=319.0741;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=34;MQRankSum=2.388;QD=1.73;ReadPosRankSum=7.719;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:370,123:493:99:883,0,5353 chrIX 439585 . G C 869.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=497;Dels=0.00;FS=390.958;HaplotypeScore=100.9481;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=34;MQRankSum=3.256;QD=1.75;ReadPosRankSum=8.199;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:366,125:496:99:899,0,5297 chrIX 439600 . G A 321.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;DP=289;Dels=0.00;FS=1.985;HaplotypeScore=139.3868;MLEAC=1;MLEAF=0.500;MQ=22.71;MQ0=28;MQRankSum=-3.369;QD=1.11;ReadPosRankSum=1.028;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:223,65:289:99:351,0,2916 chrIX 439602 . T G 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.275;DP=269;Dels=0.00;FS=2.224;HaplotypeScore=124.9155;MLEAC=1;MLEAF=0.500;MQ=22.83;MQ0=25;MQRankSum=-4.754;QD=1.09;ReadPosRankSum=3.197;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:217,52:269:99:322,0,2703 chrIX 439608 . T C 2090.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.311;DP=268;Dels=0.00;FS=59.884;HaplotypeScore=121.1959;MLEAC=1;MLEAF=0.500;MQ=23.12;MQ0=24;MQRankSum=-0.810;QD=7.80;ReadPosRankSum=-2.088;SB=-1.036e+03 GT:AD:DP:GQ:PL 0/1:105,162:268:99:2120,0,1109 chrIX 439685 . C A 2165 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=88.8211;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=5;QD=19.86;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2198,249,0 chrIX 439700 . T C 2016 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=4;QD=17.08;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,108:118:99:2049,246,0 chrIX 439715 . T C 2085.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.242;DP=164;Dels=0.00;FS=31.234;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=27.14;MQ0=4;MQRankSum=-0.623;QD=12.71;ReadPosRankSum=2.831;SB=-7.940e+02 GT:AD:DP:GQ:PL 0/1:30,134:164:62:2115,0,62 chrIX 439728 . A G 2502 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.306;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7518;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=4;MQRankSum=0.692;QD=13.52;ReadPosRankSum=5.045;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:10,175:185:99:2535,305,0 chrIX 439739 . A G 2391 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.490;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=123.1240;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=2;MQRankSum=-1.329;QD=11.50;ReadPosRankSum=4.490;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,199:208:99:2424,296,0 chrIX 439750 . A T 2296 filter AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=118.5611;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;QD=10.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:2329,287,0 chrIX 439771 . G C 1211.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=22.4840;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=0;MQRankSum=-0.129;QD=5.50;ReadPosRankSum=-9.285;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,143:220:99:1241,0,543 chrIX 439775 . G A 494.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=39.9274;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=0;MQRankSum=2.865;QD=2.31;ReadPosRankSum=9.021;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,70:214:99:524,0,1320 chrIX 439777 . C G 1177.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.755;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=40.0185;MLEAC=1;MLEAF=0.500;MQ=25.00;MQ0=0;MQRankSum=1.140;QD=5.55;ReadPosRankSum=-8.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,129:212:99:1207,0,631 chrIX 439781 . A T 2305 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=33.3271;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=0;MQRankSum=0.850;QD=11.64;ReadPosRankSum=2.425;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:2338,278,0 chrIX 439785 . T A,C 908.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.072;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.73;MQ0=0;MQRankSum=2.523;QD=7.83;ReadPosRankSum=-1.556;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:8,41,67:116:99:968,604,640,285,0,286 chrIX 439786 . T C 1292 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=31.9820;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=0;MQRankSum=1.672;QD=11.14;ReadPosRankSum=1.702;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1325,165,0 chrIX 439794 . A G 668.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=62.9824;MLEAC=1;MLEAF=0.500;MQ=25.06;MQ0=0;MQRankSum=2.599;QD=8.36;ReadPosRankSum=0.475;SB=-4.778e+00 GT:AD:DP:GQ:PL 0/1:11,69:80:0:697,0,0 chrIX 439796 . G T 879 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=57.9539;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=0;QD=11.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:912,108,0 chrIX 439833 . G T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=40.3638;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=0;MQRankSum=0.181;QD=0.60;ReadPosRankSum=0.855;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,6:30:48:48,0,265 chrM 10813 . A T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrM 13976 . A G 18756.01 filter AC=2;AF=1.00;AN=2;DP=813;Dels=0.00;FS=0.000;HaplotypeScore=67.4256;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.07;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,799:813:99:18756,2194,0 chrM 14367 . G T 13933.01 filter AC=2;AF=1.00;AN=2;DP=662;DS;Dels=0.00;FS=0.000;HaplotypeScore=37.9644;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.05;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,655:662:99:13933,1596,0 chrM 14522 . T A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.5995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4398,486,0 chrM 15329 . C G 4241.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.0846;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4241,501,0 chrM 16443 . G C 1572 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=0;QD=22.46;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1605,186,0 chrM 16463 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;QD=18.56;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1221,126,0 chrM 18976 . T A 336 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=15.27;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:369,45,0 chrM 19349 . G A 418 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.90;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:451,51,0 chrM 19458 . C T 173.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.31;SB=-8.456e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:206,21,0 chrM 19968 . T A 122.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.57;SB=-3.007e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:155,18,0 chrM 19975 . T A 119.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.480;QD=11.91;ReadPosRankSum=1.733;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:2,8:10:18:152,18,0 chrM 20195 . G A 602 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:75:635,75,0 chrM 20212 . T A 740 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=27.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:78:773,78,0 chrM 20372 . T A 227.01 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:27:260,27,0 chrM 20407 . T C 3168 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.906;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=23.0419;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=2.008;QD=22.79;ReadPosRankSum=4.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,132:139:99:3201,339,0 chrM 20525 . A G 15409.01 filter AC=2;AF=1.00;AN=2;DP=661;Dels=0.00;FS=0.000;HaplotypeScore=65.6541;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=23.31;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,644:661:99:15409,1752,0 chrM 20934 . T G 6696.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=20.4168;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.81;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,333:338:99:6696,782,0 chrM 22604 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrM 22758 . C T 88.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.70;SB=-5.875e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:121,12,0 chrM 23606 . A C 5306.01 filter AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=23.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,214:227:99:5306,565,0 chrM 23621 . C T 7111.01 filter AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=20.5192;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=24.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:7111,780,0 chrM 23756 . A C 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=4.54;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:18:160,18,0 chrM 23759 . A C 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=8.94;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:158,18,0 chrM 23763 . T G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrM 26386 . T C 4771.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=17.1819;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;QD=19.32;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,243:247:99:4771,558,0 chrM 26539 . C T 834 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.54;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:93:867,93,0 chrM 26570 . A G 589 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=21.04;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:72:622,72,0 chrM 26571 . A C 571 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.39;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:72:604,72,0 chrM 26581 . T C 566 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=23.58;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:66:599,66,0 chrM 29170 . C T 1210 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=18.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1243,129,0 chrM 29179 . G T 1170 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=18.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1203,138,0 chrM 29194 . T C 1199 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1232,135,0 chrM 29200 . C T 1096 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1129,114,0 chrM 29203 . T C 992 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1025,120,0 chrM 29206 . G A 1010 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1043,108,0 chrM 29207 . G T 959 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:992,108,0 chrM 29208 . G C 897 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:930,108,0 chrM 29209 . A T 932 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:965,108,0 chrM 29215 . C T 931 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:964,108,0 chrM 29218 . G A 941 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:974,105,0 chrM 29219 . G C 868 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:901,105,0 chrM 29220 . C T 899 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:932,105,0 chrM 29224 . T C 858 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:891,105,0 chrM 34512 . A T 14.18 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.09;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:3:44,3,0 chrM 34528 . C T 14.18 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.09;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:3:44,3,0 chrM 34533 . T C 14.18 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.09;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:3:44,3,0 chrM 36563 . G A 3961.01 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=20.6329;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3961,409,0 chrM 39517 . G T 53.97 PASS AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.99;SB=-2.621e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:86,9,0 chrM 40865 . G A 7089.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.43;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,345:347:99:7089,804,0 chrM 40886 . T C 6105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.979;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=5.7336;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-1.210;QD=18.50;ReadPosRankSum=2.887;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:3,326:330:99:6105,669,0 chrM 40901 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=14.49;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,301:301:99:4360,477,0 chrM 40907 . T A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=15.39;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,280:280:99:4310,501,0 chrM 40928 . A C 3050 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=12.60;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:3083,348,0 chrM 41214 . C A 48.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=12.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:81,9,0 chrM 41630 . A T 958 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.95;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:991,108,0 chrM 41832 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.79;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1151,126,0 chrM 41882 . G A 537 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.35;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:570,63,0 chrM 41923 . G A 378 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.89;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:42:411,42,0 chrM 42426 . G T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrM 42525 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:77,9,0 chrM 44311 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:56,6,0 chrM 44400 . A T 205.03 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:24:238,24,0 chrM 44456 . T C 81.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-5.275e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:114,12,0 chrM 44467 . G A 121.13 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-5.063e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:18:154,18,0 chrM 44508 . C T 143.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;QD=20.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:176,21,0 chrM 58185 . A T 34.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=5.00;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:67,9,0 chrM 58551 . A T 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.38;SB=-2.876e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:60,6,0 chrM 60526 . G T 2721 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=21.09;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2754,335,0 chrM 60527 . A C 2651 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=20.55;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2684,318,0 chrM 60530 . C T 2389 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=19.42;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2422,291,0 chrM 60570 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.703;DP=86;Dels=0.05;FS=0.000;HaplotypeScore=51.9283;MLEAC=2;MLEAF=1.00;MQ=38.61;MQ0=0;MQRankSum=0.339;QD=0.14;ReadPosRankSum=3.987;SB=-8.177e+01 GT:AD:DP:GQ:PL 1/1:14,68:82:6:43,6,0 chrM 61866 . G T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=1.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:6:49,6,0 chrM 61881 . G A 918 filter AC=2;AF=1.00;AN=2;DP=458;Dels=0.00;FS=0.000;HaplotypeScore=2.9214;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=2.00;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,458:458:99:951,111,0 chrM 61903 . C T 2647 filter AC=2;AF=1.00;AN=2;DP=424;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=6.24;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,424:424:99:2680,303,0 chrM 74225 . T A 15513.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.721;DP=627;Dels=0.00;FS=4.362;HaplotypeScore=52.8520;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.548;QD=24.74;ReadPosRankSum=4.841;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:8,618:627:99:15513,1734,0 chrM 74327 . T C 10302.01 filter AC=2;AF=1.00;AN=2;DP=517;Dels=0.00;FS=0.000;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.93;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,514:517:99:10302,1211,0 chrM 74384 . T A 10303.01 filter AC=2;AF=1.00;AN=2;DP=416;Dels=0.00;FS=0.000;HaplotypeScore=16.0867;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.77;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,416:416:99:10303,1081,0 chrM 74414 . A G 11011.01 filter AC=2;AF=1.00;AN=2;DP=486;Dels=0.00;FS=0.000;HaplotypeScore=19.0413;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.66;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,486:486:99:11011,1233,0 chrM 79281 . T A 11454.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=473;Dels=0.00;FS=0.000;HaplotypeScore=25.2091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.796;QD=24.22;ReadPosRankSum=2.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,471:473:99:11454,1325,0 chrM 79713 . C T 20814.01 filter AC=2;AF=1.00;AN=2;DP=932;Dels=0.00;FS=0.000;HaplotypeScore=82.8985;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.33;SB=-1.051e+04 GT:AD:DP:GQ:PL 1/1:0,929:932:99:20814,2358,0 chrM 79929 . T C 9699.01 filter AC=2;AF=1.00;AN=2;DP=476;Dels=0.00;FS=0.000;HaplotypeScore=26.7810;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.38;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,473:476:99:9699,1148,0 chrM 79980 . C T 7070.01 filter AC=2;AF=1.00;AN=2;DP=415;Dels=0.00;FS=0.000;HaplotypeScore=36.0131;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=17.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,409:415:99:7070,813,0 chrM 80001 . C A 6621.01 filter AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=21.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:6621,676,0 chrM 80016 . A T 3921.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.280;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;MQRankSum=-4.508;QD=16.41;ReadPosRankSum=4.502;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,231:239:99:3921,447,0 chrM 80019 . C T 3545.01 filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:3545,408,0 chrV 180 . G A 389 filter AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=4;QD=1.15;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,338:338:48:422,48,0 chrV 239 . C G 1257 filter AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=1.8773;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=23;QD=5.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:1290,144,0 chrV 291 . T C 402 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=11.5461;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=12;QD=9.57;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:48:435,48,0 chrV 509 . G C 4604.01 filter AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=19.27;MQ0=66;QD=13.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,339:341:99:4604,507,0 chrV 600 . G A 8004.01 filter AC=2;AF=1.00;AN=2;DP=706;Dels=0.00;FS=0.000;HaplotypeScore=52.8672;MLEAC=2;MLEAF=1.00;MQ=22.22;MQ0=23;QD=11.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,706:706:99:8004,891,0 chrV 1505 . A G 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.97;MQ0=52;MQRankSum=0.731;QD=0.77;ReadPosRankSum=0.731;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:7,50:57:9:76,9,0 chrV 1608 . T G 56.51 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.07;MQ0=6;QD=5.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:12:89,12,0 chrV 1639 . C T 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=12.7261;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=4;MQRankSum=0.503;QD=1.14;ReadPosRankSum=-1.433;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:8,20:28:62:62,0,77 chrV 1644 . G C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=16.6330;MLEAC=1;MLEAF=0.500;MQ=22.05;MQ0=1;MQRankSum=-0.383;QD=0.47;ReadPosRankSum=-0.206;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:32,4:36:47:47,0,57 chrV 1645 . T C 109.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.747;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=22.8330;MLEAC=2;MLEAF=1.00;MQ=22.63;MQ0=0;MQRankSum=-0.224;QD=2.54;ReadPosRankSum=3.986;SB=-1.352e-01 GT:AD:DP:GQ:PL 1/1:9,34:43:18:142,18,0 chrV 1649 . A C 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=30.4261;MLEAC=1;MLEAF=0.500;MQ=21.51;MQ0=0;MQRankSum=1.412;QD=1.23;ReadPosRankSum=1.511;SB=-6.863e-03 GT:AD:DP:GQ:PL 0/1:49,7:57:38:100,0,38 chrV 1650 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=30.4261;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=0;MQRankSum=1.887;QD=0.24;ReadPosRankSum=3.176;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,4:58:44:44,0,152 chrV 1656 . G A 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=0;MQRankSum=1.047;QD=0.23;ReadPosRankSum=2.796;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,4:57:43:43,0,139 chrV 1657 . C G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=0;MQRankSum=1.703;QD=0.23;ReadPosRankSum=2.702;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,4:57:43:43,0,167 chrV 1659 . A C,G 194.09 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.88;MQ0=0;QD=3.41;SB=17.97 GT:AD:DP:GQ:PL 1/2:0,4,53:57:44:254,186,177,68,0,44 chrV 1663 . G T 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=0;MQRankSum=1.609;QD=0.35;ReadPosRankSum=1.671;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,4:57:50:50,0,177 chrV 1665 . G A 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=0;MQRankSum=1.921;QD=0.30;ReadPosRankSum=1.640;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,4:57:47:47,0,163 chrV 1669 . G C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=0;MQRankSum=2.046;QD=0.23;ReadPosRankSum=1.515;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,4:57:43:43,0,176 chrV 1675 . C T 267 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=0;QD=4.77;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,56:56:33:300,33,0 chrV 1677 . A G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=2.292;QD=0.27;ReadPosRankSum=0.073;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:53,3:56:45:45,0,174 chrV 1680 . T C,G 192.05 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.96;MQ0=0;QD=3.43;SB=26.94 GT:AD:DP:GQ:PL 1/2:0,3,53:56:47:252,181,172,71,0,47 chrV 1681 . T C 250 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=0;QD=4.46;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,56:56:33:283,33,0 chrV 1684 . G A 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=1.092;QD=0.34;ReadPosRankSum=-2.802;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:53,3:56:49:49,0,181 chrV 1685 . A C 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.5507;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=2.625;QD=0.25;ReadPosRankSum=-3.134;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:52,4:56:44:44,0,178 chrV 1695 . T A 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.5401;MLEAC=1;MLEAF=0.500;MQ=21.81;MQ0=0;MQRankSum=2.341;QD=0.31;ReadPosRankSum=-2.908;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:51,3:55:47:47,0,163 chrV 1696 . T G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.4960;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=2.625;QD=0.79;ReadPosRankSum=-1.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,4:56:74:74,0,155 chrV 1698 . A G 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7073;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=0;MQRankSum=-0.745;QD=1.43;ReadPosRankSum=3.685;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:9,51:60:78:116,0,78 chrV 1717 . T C 429 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=0;MQRankSum=1.394;QD=4.52;ReadPosRankSum=2.926;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:3,92:95:51:462,51,0 chrV 1721 . A C 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=0;MQRankSum=-0.281;QD=1.16;ReadPosRankSum=-4.465;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,43:93:99:138,0,265 chrV 1722 . G A 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=-0.933;QD=1.09;ReadPosRankSum=-4.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,42:95:99:134,0,252 chrV 1734 . A G 288 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=0;QD=5.14;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:39:321,39,0 chrV 1738 . A G 313 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=0;QD=5.49;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:39:346,39,0 chrV 1757 . A C 300 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.030;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.2000;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=0;MQRankSum=0.152;QD=5.26;ReadPosRankSum=1.489;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,56:57:39:333,39,0 chrV 1758 . G A 281 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.0667;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=0;MQRankSum=1.193;QD=4.93;ReadPosRankSum=2.060;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,55:57:36:314,36,0 chrV 1762 . A G 310 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.699;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.9333;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=0;MQRankSum=1.489;QD=5.44;ReadPosRankSum=0.760;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,56:57:39:343,39,0 chrV 1765 . C G 296 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.225;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.0667;MLEAC=2;MLEAF=1.00;MQ=23.30;MQ0=0;MQRankSum=1.487;QD=4.62;ReadPosRankSum=3.862;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:9,55:64:39:329,39,0 chrV 1767 . T C 299 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.726;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.6585;MLEAC=2;MLEAF=1.00;MQ=21.70;MQ0=0;MQRankSum=2.813;QD=3.83;ReadPosRankSum=6.692;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:22,55:78:39:332,39,0 chrV 1768 . T G 265.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.913;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7918;MLEAC=2;MLEAF=1.00;MQ=21.15;MQ0=0;MQRankSum=2.880;QD=3.16;ReadPosRankSum=7.112;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:28,56:84:20:298,20,0 chrV 1769 . T C 322 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.017;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=15.0466;MLEAC=2;MLEAF=1.00;MQ=20.52;MQ0=0;MQRankSum=0.951;QD=3.50;ReadPosRankSum=5.104;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:14,78:92:42:355,42,0 chrV 1771 . G T 295.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.939;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=22.9334;MLEAC=2;MLEAF=1.00;MQ=19.75;MQ0=0;MQRankSum=2.268;QD=2.89;ReadPosRankSum=6.551;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:42,60:102:20:328,20,0 chrV 1773 . G A 231.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.637;DP=113;Dels=0.00;FS=9.403;HaplotypeScore=27.9154;MLEAC=1;MLEAF=0.500;MQ=19.18;MQ0=0;MQRankSum=3.177;QD=2.04;ReadPosRankSum=8.382;SB=-3.034e+00 GT:AD:DP:GQ:PL 0/1:53,55:113:21:261,0,21 chrV 1777 . G C 258.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.898;DP=129;Dels=0.00;FS=14.241;HaplotypeScore=31.9039;MLEAC=1;MLEAF=0.500;MQ=18.47;MQ0=0;MQRankSum=4.308;QD=2.00;ReadPosRankSum=9.013;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:74,55:129:78:288,0,78 chrV 1783 . C T 281.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.056;DP=144;Dels=0.00;FS=16.787;HaplotypeScore=16.5029;MLEAC=1;MLEAF=0.500;MQ=17.73;MQ0=7;MQRankSum=4.564;QD=1.95;ReadPosRankSum=3.641;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:87,57:144:99:311,0,136 chrV 1785 . A G 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;DP=146;Dels=0.00;FS=16.695;HaplotypeScore=14.4925;MLEAC=1;MLEAF=0.500;MQ=17.61;MQ0=9;MQRankSum=4.635;QD=1.64;ReadPosRankSum=0.362;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:90,55:146:99:269,0,136 chrV 1798 . A G 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DP=138;Dels=0.01;FS=7.099;HaplotypeScore=16.2313;MLEAC=1;MLEAF=0.500;MQ=14.29;MQ0=31;MQRankSum=3.411;QD=0.46;ReadPosRankSum=-5.276;SB=-2.684e+00 GT:AD:DP:GQ:PL 0/1:111,26:137:94:94,0,160 chrV 1800 . G A 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.083;DP=143;Dels=0.00;FS=4.578;HaplotypeScore=14.2983;MLEAC=1;MLEAF=0.500;MQ=14.68;MQ0=32;MQRankSum=2.503;QD=0.38;ReadPosRankSum=-3.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,21:143:85:85,0,160 chrV 1803 . G A 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532;DP=159;Dels=0.00;FS=4.566;HaplotypeScore=11.3987;MLEAC=1;MLEAF=0.500;MQ=14.50;MQ0=42;MQRankSum=2.370;QD=0.33;ReadPosRankSum=-4.863;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,25:159:82:82,0,184 chrV 1815 . C A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.213;DP=196;Dels=0.00;FS=7.099;HaplotypeScore=1.9699;MLEAC=1;MLEAF=0.500;MQ=11.91;MQ0=90;MQRankSum=3.771;QD=0.07;ReadPosRankSum=-7.317;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:135,56:196:44:44,0,148 chrV 1870 . A G 69.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;DP=452;Dels=0.01;FS=34.343;HaplotypeScore=92.1319;MLEAC=2;MLEAF=1.00;MQ=6.32;MQ0=387;MQRankSum=2.531;QD=0.15;ReadPosRankSum=0.499;SB=-1.125e+02 GT:AD:DP:GQ:PL 1/1:394,52:448:12:102,12,0 chrV 1873 . C G 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;DP=464;Dels=0.00;FS=25.079;HaplotypeScore=74.8056;MLEAC=1;MLEAF=0.500;MQ=6.18;MQ0=396;MQRankSum=2.686;QD=0.03;ReadPosRankSum=2.157;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:460,4:464:31:42,0,31 chrV 1875 . G C 11.44 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DP=470;Dels=0.00;FS=28.632;HaplotypeScore=67.0820;MLEAC=1;MLEAF=0.500;MQ=6.21;MQ0=399;MQRankSum=3.016;QD=0.02;ReadPosRankSum=1.967;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:455,4:470:13:41,0,13 chrV 1879 . G T 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;DP=499;Dels=0.00;FS=63.809;HaplotypeScore=51.5116;MLEAC=1;MLEAF=0.500;MQ=6.33;MQ0=412;MQRankSum=4.517;QD=0.03;ReadPosRankSum=-1.344;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:488,11:499:31:45,0,31 chrV 1885 . G C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DP=537;Dels=0.00;FS=29.907;HaplotypeScore=48.0319;MLEAC=1;MLEAF=0.500;MQ=6.69;MQ0=420;MQRankSum=3.140;QD=0.02;ReadPosRankSum=-1.036;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:530,4:537:31:43,0,31 chrV 1992 . A C 132.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.515;DP=28;Dels=0.00;FS=14.236;HaplotypeScore=11.2988;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=1;MQRankSum=-0.609;QD=4.72;ReadPosRankSum=1.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,13:28:21:165,21,0 chrV 1993 . G C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.396;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=5.4244;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=1;MQRankSum=-1.826;QD=0.77;ReadPosRankSum=-2.256;SB=1.24 GT:AD:DP:GQ:PL 1/1:10,3:18:6:45,6,0 chrV 2084 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.23;MQ0=212;QD=0.19;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,222:222:9:74,9,0 chrV 2144 . A T 1326 filter AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=16.85;MQ0=89;QD=7.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,179:186:99:1359,156,0 chrV 2146 . T C 1310 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.15;MQ0=64;QD=8.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,134:160:99:1343,156,0 chrV 2187 . T A 1054 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=16;QD=11.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1087,126,0 chrV 3624 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.95;MQ0=35;QD=1.00;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:30,17:47:9:79,9,0 chrV 3663 . T C 47.97 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.25;MQ0=19;QD=1.20;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:80,9,0 chrV 3860 . A T 375.04 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.248;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=10.51;MQ0=139;MQRankSum=1.404;QD=2.34;ReadPosRankSum=-0.908;SB=-2.807e-02 GT:AD:DP:GQ:PL 1/1:11,149:160:23:408,23,0 chrV 4086 . A T 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=8.44;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:100,12,0 chrV 4092 . C G 487 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=10;QD=10.36;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:6,39:47:60:520,60,0 chrV 4093 . G A 530 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=11;QD=11.04;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:9,38:48:60:563,60,0 chrV 6378 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=2.42;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:9:6:53,6,0 chrV 6436 . A T 961 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;QD=24.64;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:994,111,0 chrV 6487 . T C 246 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=18.92;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:33:279,33,0 chrV 6492 . C T 93.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=0;MQRankSum=0.736;QD=13.32;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:7:15:126,15,0 chrV 6566 . A C 135.13 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=0;QD=11.26;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:168,18,0 chrV 6569 . C T 119.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DP=14;Dels=0.00;FS=4.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;MQRankSum=1.240;QD=8.51;ReadPosRankSum=-1.240;SB=-4.312e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:152,18,0 chrV 6573 . C T 161.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.510;DP=17;Dels=0.00;FS=5.315;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=0;MQRankSum=1.531;QD=9.47;ReadPosRankSum=-1.327;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:21:194,21,0 chrV 6577 . A G 159.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DP=19;Dels=0.00;FS=5.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=0;MQRankSum=1.369;QD=8.37;ReadPosRankSum=-1.369;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:21:192,21,0 chrV 6586 . A G 288 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.8735;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=12.00;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:39:321,39,0 chrV 6611 . G T 524 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;QD=18.07;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:557,63,0 chrV 6617 . C T 506 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;QD=17.45;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:539,63,0 chrV 6632 . T A 516 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=0;QD=18.43;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:63:549,63,0 chrV 6674 . C T 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:83,9,0 chrV 6676 . T A 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:79,9,0 chrV 6677 . C G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:77,9,0 chrV 6678 . C T 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:83,9,0 chrV 6682 . C T 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=2;QD=9.06;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:105,12,0 chrV 6683 . C T 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=2;QD=8.69;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:102,12,0 chrV 6704 . C A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DP=15;Dels=0.00;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.39;MQ0=8;MQRankSum=-0.550;QD=1.73;ReadPosRankSum=0.550;SB=-2.025e+01 GT:AD:DP:GQ:PL 0/1:10,5:15:36:56,0,36 chrV 6759 . G A 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;DP=17;Dels=0.00;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.91;MQ0=8;MQRankSum=-0.573;QD=3.00;ReadPosRankSum=0.573;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:10,7:17:37:81,0,37 chrV 7121 . C T 85.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=17.05;SB=-4.230e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:118,15,0 chrV 7122 . T C 85.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=17.05;SB=-4.230e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:118,15,0 chrV 7134 . C T 87.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=17.45;SB=-4.230e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:120,15,0 chrV 7155 . G A 93.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=18.65;SB=-4.230e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:126,15,0 chrV 7262 . G A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=2.48;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:46,6,0 chrV 7343 . G C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=152;Dels=0.00;FS=13.891;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=2.477;QD=20.43;ReadPosRankSum=-0.835;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3138,363,0 chrV 7383 . T C 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=142;Dels=0.00;FS=5.904;HaplotypeScore=10.7451;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;MQRankSum=0.596;QD=21.07;ReadPosRankSum=2.837;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3025,345,0 chrV 7602 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=21.98;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2297,252,0 chrV 7632 . G C 2066 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=20.87;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2099,240,0 chrV 7640 . A G 1918 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=20.62;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1951,222,0 chrV 7658 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=20.66;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1665,189,0 chrV 7660 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=20.99;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1691,192,0 chrV 7669 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=20.84;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1575,171,0 chrV 7718 . G A 898 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=17.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:931,102,0 chrV 7734 . G C 675 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=16.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:81:708,81,0 chrV 7739 . C T 578 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.62;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:69:611,69,0 chrV 10076 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=4.65;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:45,6,0 chrV 10121 . T C 579 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=11.13;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:69:612,69,0 chrV 10126 . G A 584 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=11.45;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:617,69,0 chrV 10185 . T C 948 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=16.07;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:981,114,0 chrV 10187 . T G 995 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=16.58;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1028,117,0 chrV 10315 . C A 1906 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.66;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1939,213,0 chrV 10340 . C G 1877 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.09;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1910,210,0 chrV 10400 . A G 1825 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.73;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1858,210,0 chrV 10542 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.50;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3381,369,0 chrV 10621 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.62;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3348,381,0 chrV 10660 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.42;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3207,354,0 chrV 10700 . T A 2999 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.58;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3032,345,0 chrV 10731 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.76;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3037,339,0 chrV 10779 . T C 2930 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.39;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2963,351,0 chrV 10946 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.88;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1718,198,0 chrV 10981 . C A 1210 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=18.62;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1243,138,0 chrV 10982 . T A 1219 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;MQRankSum=-0.773;QD=18.75;ReadPosRankSum=1.626;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1252,141,0 chrV 10988 . A T 1196 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=-1.010;QD=16.61;ReadPosRankSum=1.684;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1229,138,0 chrV 11049 . T C 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.104;QD=19.04;ReadPosRankSum=1.697;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1956,228,0 chrV 11100 . A G 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=4.726;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.820;QD=21.88;ReadPosRankSum=1.659;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2112,237,0 chrV 11186 . T C 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.635;QD=21.77;ReadPosRankSum=1.703;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2711,309,0 chrV 11195 . T G 2729 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.49;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2762,318,0 chrV 11263 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.39;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3056,339,0 chrV 11351 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.544;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.954;QD=23.22;ReadPosRankSum=1.709;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3437,399,0 chrV 11381 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.06;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3392,384,0 chrV 11439 . C G 3085 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.84;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3118,360,0 chrV 11461 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=141;Dels=0.00;FS=3.004;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-0.061;QD=21.01;ReadPosRankSum=2.415;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2995,351,0 chrV 11688 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.65;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2057,237,0 chrV 11696 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.42;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2014,219,0 chrV 11741 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=17.46;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1884,207,0 chrV 11756 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.42;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1930,222,0 chrV 11847 . T A 2131 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=23.94;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2164,240,0 chrV 12024 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=18.17;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1904,213,0 chrV 12028 . A C 1857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;MQRankSum=-0.543;QD=18.21;ReadPosRankSum=1.698;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1890,216,0 chrV 12036 . C A 1772 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=16.41;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:1805,195,0 chrV 12057 . T C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.718;DP=118;Dels=0.00;FS=5.434;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-0.752;QD=13.49;ReadPosRankSum=2.924;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:1625,186,0 chrV 12071 . A C 1930 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2144;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=15.69;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1963,225,0 chrV 12186 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.55;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2058,222,0 chrV 12215 . T C 1839 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.39;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1872,213,0 chrV 12258 . A C 2491 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.09;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2524,288,0 chrV 12330 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.45;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2278,258,0 chrV 12341 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.49;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2194,237,0 chrV 12413 . A T 2283 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=21.54;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2316,261,0 chrV 12511 . T A 2008 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.92;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2041,234,0 chrV 12532 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.28;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2038,222,0 chrV 12571 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=16.83;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2053,222,0 chrV 12585 . G T 1967 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=15.61;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2000,222,0 chrV 12600 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;QD=14.78;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1777,204,0 chrV 12612 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=94.0397;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=15.59;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1841,201,0 chrV 12625 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=15.07;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1630,180,0 chrV 12629 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=0;QD=13.99;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1530,171,0 chrV 12704 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.03;FS=0.000;HaplotypeScore=40.7368;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.03;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2751,300,0 chrV 12763 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=23.65;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3642,396,0 chrV 12847 . G C 3066 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.44;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3099,354,0 chrV 12863 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.38;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3049,351,0 chrV 12869 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.81;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3005,330,0 chrV 12937 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.54;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3516,390,0 chrV 13004 . A T 2947 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=112.8426;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.16;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2980,342,0 chrV 13024 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.35;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2958,318,0 chrV 13159 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.98;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3250,363,0 chrV 13167 . T G 2985 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.03;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3018,348,0 chrV 13244 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.62;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3211,357,0 chrV 13307 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.45;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3424,387,0 chrV 13446 . T A 2804 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.75;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2837,315,0 chrV 13454 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.40;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,136:141:99:2628,288,0 chrV 13502 . T C 2527 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=118.8805;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.92;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2560,291,0 chrV 13645 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.46;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2846,309,0 chrV 13996 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=135;Dels=0.00;FS=7.381;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.738;QD=21.21;ReadPosRankSum=2.359;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2897,333,0 chrV 14061 . A G 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.115;QD=19.61;ReadPosRankSum=1.681;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2680,312,0 chrV 14073 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1478;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.62;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2800,315,0 chrV 14175 . A T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.99;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3430,375,0 chrV 14306 . A G 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=131;Dels=0.00;FS=2.577;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=1.085;QD=22.76;ReadPosRankSum=2.931;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3014,345,0 chrV 14343 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.88;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2622,291,0 chrV 14360 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.04;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2920,318,0 chrV 14411 . T A 2274 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.27;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2307,258,0 chrV 14438 . T A 2080 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.13;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2113,234,0 chrV 14467 . C A 1354 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=21.16;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1387,153,0 chrV 14482 . A G 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-2.221;QD=18.96;ReadPosRankSum=2.359;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1057,120,0 chrV 14498 . G A 1114 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=20.63;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1147,126,0 chrV 14512 . C G 1092 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.41;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1125,129,0 chrV 14579 . T A 1591 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.66;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1624,180,0 chrV 14598 . A C 1282 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=20.68;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1315,150,0 chrV 14660 . T A 648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.102;QD=19.06;ReadPosRankSum=1.529;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:75:681,75,0 chrV 14710 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=24.17;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1290,144,0 chrV 14785 . T A 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.685;QD=17.53;ReadPosRankSum=1.249;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:90:787,90,0 chrV 14798 . C T 710 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=16.90;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:743,81,0 chrV 14813 . A G 769 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=13.03;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:96:802,96,0 chrV 14893 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.70;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1531,168,0 chrV 14904 . G A 1113 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.19;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1146,126,0 chrV 14921 . T A 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=8.605;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.957;QD=22.28;ReadPosRankSum=2.357;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1214,129,0 chrV 14955 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.69;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1295,144,0 chrV 15174 . C T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DP=80;Dels=0.00;FS=9.024;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=0;MQRankSum=-0.704;QD=0.18;ReadPosRankSum=2.896;SB=-8.910e+02 GT:AD:DP:GQ:PL 0/1:4,75:80:39:44,0,39 chrV 15195 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.27;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1844,210,0 chrV 15261 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.60;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2067,237,0 chrV 15386 . C T 72.51 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=108.2691;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=0.55;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:12:105,12,0 chrV 15479 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=166;Dels=0.00;FS=2.966;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.794;QD=23.04;ReadPosRankSum=2.405;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3824,438,0 chrV 15541 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=6.429;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-0.511;QD=19.27;ReadPosRankSum=2.415;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2769,327,0 chrV 15562 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=18.86;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2730,297,0 chrV 15585 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=18.51;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2939,324,0 chrV 15603 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=16.32;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2596,294,0 chrV 15606 . A G 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=-0.427;QD=15.87;ReadPosRankSum=1.710;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2477,291,0 chrV 15672 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.46;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:2738,300,0 chrV 15698 . T A 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=140;Dels=0.00;FS=10.520;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.468;QD=21.87;ReadPosRankSum=2.777;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3095,345,0 chrV 15888 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=24.57;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3292,363,0 chrV 15940 . A G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.533;QD=22.18;ReadPosRankSum=1.704;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2739,312,0 chrV 15966 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.82;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,128:133:99:2669,294,0 chrV 16323 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.946;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.121;QD=22.03;ReadPosRankSum=1.705;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2875,324,0 chrV 17065 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.80;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3576,402,0 chrV 17311 . C T 2465 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.26;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2498,273,0 chrV 17320 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.04;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2470,270,0 chrV 17368 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.50;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2978,333,0 chrV 17400 . T A 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=175;Dels=0.00;FS=3.028;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.400;QD=22.74;ReadPosRankSum=2.379;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3980,450,0 chrV 17672 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.45;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2730,303,0 chrV 17728 . T C 1780 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1813,204,0 chrV 17815 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.59;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1307,156,0 chrV 17824 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.79;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1332,153,0 chrV 18035 . C T 867 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:900,99,0 chrV 18174 . A T 2204 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2237,252,0 chrV 18447 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;DP=156;Dels=0.00;FS=7.861;HaplotypeScore=12.9432;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.038;QD=22.22;ReadPosRankSum=3.793;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:5,150:156:99:3467,393,0 chrV 18515 . A T 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=182;Dels=0.00;FS=8.092;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.978;QD=20.91;ReadPosRankSum=2.396;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3806,435,0 chrV 18519 . T G 3657.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.14;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3657,423,0 chrV 18593 . T C 3018 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.73;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3051,360,0 chrV 18636 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.72;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3487,375,0 chrV 18839 . C A 3067 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=25.35;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3100,339,0 chrV 18945 . T C 1121 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.67;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1154,129,0 chrV 18949 . T C 1065 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.02;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1098,123,0 chrV 18960 . T A 714 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=34.7943;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:81:747,81,0 chrV 18969 . T C 598 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.61;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:72:631,72,0 chrV 19009 . G A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.73;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:48,6,0 chrV 19014 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.78;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:49,6,0 chrV 19015 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.78;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:49,6,0 chrV 19017 . A C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.82;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:50,6,0 chrV 19018 . T G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.82;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:50,6,0 chrV 19025 . A G 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.56;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:12:106,12,0 chrV 19034 . T C 127.13 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=41.5599;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=1.84;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,69:69:18:160,18,0 chrV 19049 . T G 249 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=3.11;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,80:80:33:282,33,0 chrV 19051 . C G 258 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=3.23;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,80:80:33:291,33,0 chrV 19056 . C T 327 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=3.80;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:39:360,39,0 chrV 19067 . A T 354 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=4.07;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:42:387,42,0 chrV 19077 . G A 458 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=5.20;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:54:491,54,0 chrV 19082 . T G 443 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=5.47;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:54:476,54,0 chrV 19084 . T C 412 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=5.09;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:54:445,54,0 chrV 19087 . T C 442 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=5.46;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:54:475,54,0 chrV 19088 . C A 469 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=5.79;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:54:502,54,0 chrV 19099 . A G 417 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=39.0637;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=-1.391;QD=5.87;ReadPosRankSum=1.683;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,70:71:51:450,51,0 chrV 19105 . C T 78.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.795;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=-0.285;QD=1.21;ReadPosRankSum=-6.869;SB=2.49 GT:AD:DP:GQ:PL 1/1:37,28:65:12:111,12,0 chrV 19108 . A G 62.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=0.455;QD=1.01;ReadPosRankSum=-6.250;SB=2.49 GT:AD:DP:GQ:PL 1/1:38,24:62:12:95,12,0 chrV 19113 . A G 305 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=8.24;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:39:338,39,0 chrV 19114 . A G 301 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=8.14;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:39:334,39,0 chrV 19118 . T C 314 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=8.26;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:39:347,39,0 chrV 19121 . A G 314 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=8.26;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,37:38:39:347,39,0 chrV 19127 . C T 244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=6.97;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:30:277,30,0 chrV 19135 . A T 168.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;MQRankSum=-0.667;QD=6.46;ReadPosRankSum=1.600;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:1,25:26:24:201,24,0 chrV 19233 . A G 41.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;QD=3.23;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:74,9,0 chrV 19246 . T A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;MQRankSum=0.437;QD=1.30;ReadPosRankSum=2.317;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:2,35:37:9:80,9,0 chrV 19251 . T C 89.26 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=2.41;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:15:122,15,0 chrV 19254 . C T 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=2.90;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:15:137,15,0 chrV 19256 . C T 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=2.79;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:15:133,15,0 chrV 19260 . A T 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=2.23;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:15:131,15,0 chrV 19263 . G C 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=43.6096;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=1.55;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,44:46:12:104,12,0 chrV 19276 . A T 83.26 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=48.5617;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=1.70;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,49:49:15:116,15,0 chrV 19277 . C T 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=48.5617;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=2.23;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,49:49:18:142,18,0 chrV 19279 . G A 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=48.5617;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=2.41;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,49:49:18:151,18,0 chrV 19296 . G T 133.13 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=2.61;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,51:51:18:166,18,0 chrV 19297 . T C 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=2.47;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,51:51:18:159,18,0 chrV 19300 . T C 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=2.49;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,51:51:18:160,18,0 chrV 19304 . C G 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=2.47;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,51:51:18:159,18,0 chrV 19309 . G A 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=1.61;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:12:110,12,0 chrV 19310 . A T 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=1.59;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:12:109,12,0 chrV 19319 . C T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=1.13;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:9:83,9,0 chrV 19324 . A C 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=1.53;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:81,9,0 chrV 19325 . G C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=1.47;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:79,9,0 chrV 19329 . A C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=1.41;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:77,9,0 chrV 19418 . A G 204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=0;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.193;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:1,17:18:30:237,30,0 chrV 19431 . C T 612 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=16.54;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:645,72,0 chrV 19455 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.59;MQ0=0;QD=18.75;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1177,132,0 chrV 19467 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=32.35;MQ0=0;QD=18.61;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1447,171,0 chrV 19571 . A C 1935.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.385;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=622.9298;MLEAC=1;MLEAF=0.500;MQ=47.39;MQ0=11;MQRankSum=1.542;QD=11.94;ReadPosRankSum=5.010;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:29,130:162:28:1965,0,28 chrV 19618 . C T 6816.01 filter AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=20.8567;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=8;QD=19.36;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,352:352:99:6816,771,0 chrV 19654 . A C 8012.01 filter AC=2;AF=1.00;AN=2;DP=443;Dels=0.00;FS=0.000;HaplotypeScore=25.2114;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=7;QD=18.09;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,437:443:99:8012,927,0 chrV 19717 . C T 14028.01 filter AC=2;AF=1.00;AN=2;DP=706;Dels=0.00;FS=0.000;HaplotypeScore=25.6965;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=10;QD=19.87;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,706:706:99:14028,1590,0 chrV 19972 . C A 2344.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.789;DP=711;Dels=0.00;FS=4.502;HaplotypeScore=29.4940;MLEAC=1;MLEAF=0.500;MQ=35.64;MQ0=72;MQRankSum=0.400;QD=3.30;ReadPosRankSum=-0.115;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:469,242:711:99:2374,0,6451 chrV 20116 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=12.61;MQ0=8;QD=1.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:14:6:53,6,0 chrV 20785 . T C 3737.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.659;DP=467;Dels=0.00;FS=118.583;HaplotypeScore=34.6867;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=198;MQRankSum=3.475;QD=8.00;ReadPosRankSum=-1.534;SB=-1.630e+03 GT:AD:DP:GQ:PL 0/1:124,339:467:99:3737,0,536 chrV 20824 . G A 1419 filter AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=235;QD=4.68;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,303:303:99:1452,168,0 chrV 20858 . C T 1841 filter AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=16.69;MQ0=185;QD=5.46;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,336:337:99:1874,213,0 chrV 20941 . C T 1100 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.18;MQ0=91;QD=6.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,175:183:99:1133,126,0 chrV 21001 . C T 1226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.972;DP=232;Dels=0.00;FS=57.802;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=84;MQRankSum=-1.108;QD=5.28;ReadPosRankSum=1.445;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:116,115:232:99:1256,0,956 chrV 21022 . A G 3165 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=220;Dels=0.00;FS=7.502;HaplotypeScore=7.9497;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=76;MQRankSum=-1.289;QD=14.39;ReadPosRankSum=2.415;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:3198,366,0 chrV 21110 . A T 1436 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=86;Dels=0.00;FS=32.333;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=27;MQRankSum=2.367;QD=16.70;ReadPosRankSum=2.325;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1469,159,0 chrV 21152 . G A 797.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;DP=93;Dels=0.00;FS=13.524;HaplotypeScore=20.8686;MLEAC=1;MLEAF=0.500;MQ=40.72;MQ0=5;MQRankSum=1.709;QD=8.57;ReadPosRankSum=1.943;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:51,40:93:99:827,0,808 chrV 21153 . T C 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.560;DP=96;Dels=0.00;FS=16.503;HaplotypeScore=19.2912;MLEAC=1;MLEAF=0.500;MQ=41.80;MQ0=5;MQRankSum=0.589;QD=0.24;ReadPosRankSum=-1.288;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:77,19:96:53:53,0,1537 chrV 21290 . C G 388.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.597;DP=158;Dels=0.00;FS=21.279;HaplotypeScore=12.4888;MLEAC=1;MLEAF=0.500;MQ=49.74;MQ0=9;MQRankSum=1.939;QD=2.46;ReadPosRankSum=0.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,37:158:99:418,0,2025 chrV 21295 . A G 332.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DP=147;Dels=0.00;FS=21.842;HaplotypeScore=14.4506;MLEAC=1;MLEAF=0.500;MQ=48.82;MQ0=9;MQRankSum=0.759;QD=2.26;ReadPosRankSum=0.639;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:113,34:147:99:362,0,1821 chrV 21300 . T G 324.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.955;DP=145;Dels=0.00;FS=19.665;HaplotypeScore=16.5934;MLEAC=1;MLEAF=0.500;MQ=48.27;MQ0=9;MQRankSum=1.328;QD=2.23;ReadPosRankSum=0.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,33:145:99:354,0,1801 chrV 21355 . G T 646.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;DP=134;Dels=0.00;FS=0.676;HaplotypeScore=8.8657;MLEAC=1;MLEAF=0.500;MQ=46.19;MQ0=3;MQRankSum=-1.920;QD=4.82;ReadPosRankSum=-0.763;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:71,63:134:99:676,0,817 chrV 21381 . A G 1667.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.350;DP=211;Dels=0.00;FS=2.498;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=52.43;MQ0=0;MQRankSum=2.296;QD=7.90;ReadPosRankSum=-2.179;SB=-6.010e+02 GT:AD:DP:GQ:PL 0/1:89,121:211:99:1697,0,1362 chrV 21440 . T G 3471.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.841;DP=296;Dels=0.00;FS=2.088;HaplotypeScore=14.0868;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=2.128;QD=11.73;ReadPosRankSum=0.654;SB=-1.555e+03 GT:AD:DP:GQ:PL 0/1:102,192:296:99:3471,0,1577 chrV 21547 . T C 1801 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=140;Dels=0.00;FS=2.588;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=26;MQRankSum=1.027;QD=12.86;ReadPosRankSum=2.849;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:1834,207,0 chrV 21548 . T C 1786 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.200;DP=143;Dels=0.00;FS=5.247;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=26;MQRankSum=-3.140;QD=12.49;ReadPosRankSum=3.336;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:4,138:143:99:1819,207,0 chrV 21741 . A T 5779.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.737;DP=362;Dels=0.00;FS=50.181;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=18;MQRankSum=11.678;QD=15.96;ReadPosRankSum=-3.677;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:82,280:362:99:5779,278,0 chrV 21762 . C A 5770.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.799;DP=369;Dels=0.00;FS=43.348;HaplotypeScore=21.2172;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=22;MQRankSum=12.102;QD=15.64;ReadPosRankSum=0.772;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:84,283:369:99:5770,284,0 chrV 21849 . T C 9939.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=480;Dels=0.00;FS=5.801;HaplotypeScore=26.6232;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=6;MQRankSum=-0.220;QD=20.71;ReadPosRankSum=2.934;SB=-4.696e+03 GT:AD:DP:GQ:PL 1/1:3,477:480:99:9939,1163,0 chrV 21876 . C T 12300.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.237;DP=565;Dels=0.00;FS=104.411;HaplotypeScore=30.0544;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=5;MQRankSum=8.539;QD=21.77;ReadPosRankSum=6.529;SB=-5.732e+03 GT:AD:DP:GQ:PL 1/1:29,535:565:99:12300,1261,0 chrV 21990 . A G 3835.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.236;DP=540;Dels=0.00;FS=50.388;HaplotypeScore=59.4628;MLEAC=1;MLEAF=0.500;MQ=39.59;MQ0=37;MQRankSum=-6.798;QD=7.10;ReadPosRankSum=0.057;SB=-9.720e+02 GT:AD:DP:GQ:PL 0/1:253,287:540:99:3835,0,4011 chrV 21993 . A T 3879.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.170;DP=524;Dels=0.00;FS=63.417;HaplotypeScore=58.4165;MLEAC=1;MLEAF=0.500;MQ=38.84;MQ0=39;MQRankSum=-11.311;QD=7.40;ReadPosRankSum=2.270;SB=-9.890e+02 GT:AD:DP:GQ:PL 0/1:205,270:524:99:3879,0,3482 chrV 21999 . G A 9609.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=521;Dels=0.00;FS=0.000;HaplotypeScore=66.1789;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=39;QD=18.44;SB=-4.404e+03 GT:AD:DP:GQ:PL 1/1:0,518:521:99:9609,1062,0 chrV 22143 . G A 1701.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.131;DP=505;Dels=0.00;FS=25.973;HaplotypeScore=32.5451;MLEAC=1;MLEAF=0.500;MQ=48.62;MQ0=8;MQRankSum=-9.665;QD=3.37;ReadPosRankSum=-0.056;SB=-2.780e+02 GT:AD:DP:GQ:PL 0/1:344,159:505:99:1731,0,6238 chrV 22158 . G A 1730.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.388;DP=505;Dels=0.00;FS=53.031;HaplotypeScore=24.8309;MLEAC=1;MLEAF=0.500;MQ=46.84;MQ0=8;MQRankSum=-11.634;QD=3.43;ReadPosRankSum=-0.150;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:343,162:505:99:1760,0,6171 chrV 22200 . A G 1477.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.151;DP=519;Dels=0.00;FS=41.622;HaplotypeScore=31.6317;MLEAC=1;MLEAF=0.500;MQ=40.69;MQ0=32;MQRankSum=-11.584;QD=2.85;ReadPosRankSum=0.223;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:338,180:519:99:1507,0,5860 chrV 22221 . G A 1562.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.437;DP=508;Dels=0.00;FS=30.894;HaplotypeScore=26.1215;MLEAC=1;MLEAF=0.500;MQ=38.94;MQ0=33;MQRankSum=-10.015;QD=3.07;ReadPosRankSum=1.704;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:316,189:508:99:1592,0,5372 chrV 22302 . T G 6613.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.635;DP=366;Dels=0.00;FS=15.183;HaplotypeScore=21.6575;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=23;MQRankSum=-2.781;QD=18.07;ReadPosRankSum=3.770;SB=-3.491e+03 GT:AD:DP:GQ:PL 1/1:5,352:366:99:6613,759,0 chrV 22432 . G A 2548.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.497;DP=320;Dels=0.00;FS=32.566;HaplotypeScore=29.9625;MLEAC=1;MLEAF=0.500;MQ=38.44;MQ0=13;MQRankSum=-1.166;QD=7.96;ReadPosRankSum=-1.978;SB=-5.530e+02 GT:AD:DP:GQ:PL 0/1:111,208:320:99:2578,0,1589 chrV 22502 . T C 1520.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.809;DP=305;Dels=0.00;FS=182.769;HaplotypeScore=19.1469;MLEAC=1;MLEAF=0.500;MQ=49.14;MQ0=36;MQRankSum=3.155;QD=4.98;ReadPosRankSum=-1.319;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:198,107:305:99:1550,0,2996 chrV 22536 . A G 1371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.221;DP=342;Dels=0.00;FS=296.786;HaplotypeScore=14.3177;MLEAC=1;MLEAF=0.500;MQ=50.03;MQ0=40;MQRankSum=-0.644;QD=4.01;ReadPosRankSum=-0.420;SB=-2.085e+02 GT:AD:DP:GQ:PL 0/1:219,121:342:99:1401,0,3174 chrV 22542 . G C 5697.01 filter AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=38;QD=16.86;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,333:338:99:5697,674,0 chrV 22614 . C G 551.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;DP=271;Dels=0.00;FS=119.638;HaplotypeScore=16.1441;MLEAC=1;MLEAF=0.500;MQ=39.04;MQ0=33;MQRankSum=-8.900;QD=2.03;ReadPosRankSum=-3.433;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:157,110:271:99:581,0,2441 chrV 22625 . G A 2705.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.230;DP=267;Dels=0.00;FS=150.728;HaplotypeScore=19.8406;MLEAC=1;MLEAF=0.500;MQ=39.22;MQ0=30;MQRankSum=9.637;QD=10.13;ReadPosRankSum=3.670;SB=-1.011e+03 GT:AD:DP:GQ:PL 0/1:114,152:267:99:2735,0,390 chrV 22635 . T C 2722.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.032;DP=248;Dels=0.00;FS=154.801;HaplotypeScore=19.1208;MLEAC=1;MLEAF=0.500;MQ=40.06;MQ0=25;MQRankSum=10.432;QD=10.98;ReadPosRankSum=-1.335;SB=-9.400e+02 GT:AD:DP:GQ:PL 0/1:88,158:248:85:2752,0,85 chrV 22641 . C A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.770;DP=243;Dels=0.00;FS=159.768;HaplotypeScore=17.0545;MLEAC=1;MLEAF=0.500;MQ=40.35;MQ0=26;MQRankSum=-10.316;QD=0.05;ReadPosRankSum=4.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,78:243:42:42,0,2960 chrV 22854 . A G 5313.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=296;Dels=0.00;FS=8.436;HaplotypeScore=4.8094;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=38;MQRankSum=-0.185;QD=17.95;ReadPosRankSum=2.402;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,293:296:99:5313,624,0 chrV 22863 . G A 5219.01 filter AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=34;QD=19.92;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,259:262:99:5219,573,0 chrV 22944 . A G 1755.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.751;DP=217;Dels=0.00;FS=423.004;HaplotypeScore=15.1783;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=29;MQRankSum=0.287;QD=8.09;ReadPosRankSum=0.774;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:96,120:217:99:1785,0,1202 chrV 22959 . G A 1615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.962;DP=258;Dels=0.00;FS=282.263;HaplotypeScore=11.1469;MLEAC=1;MLEAF=0.500;MQ=32.99;MQ0=31;MQRankSum=-0.431;QD=6.26;ReadPosRankSum=0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,119:258:99:1645,0,1899 chrV 22962 . G A 1536.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.756;DP=261;Dels=0.00;FS=269.156;HaplotypeScore=18.2451;MLEAC=1;MLEAF=0.500;MQ=33.35;MQ0=31;MQRankSum=-1.340;QD=5.89;ReadPosRankSum=1.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,111:261:99:1566,0,2171 chrV 23019 . A T 238.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.855;DP=334;Dels=0.00;FS=3.859;HaplotypeScore=82.7478;MLEAC=1;MLEAF=0.500;MQ=40.93;MQ0=15;MQRankSum=-9.261;QD=0.71;ReadPosRankSum=0.825;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:258,76:334:99:268,0,5225 chrV 23028 . A C 1037.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.487;DP=332;Dels=0.00;FS=88.236;HaplotypeScore=134.7197;MLEAC=1;MLEAF=0.500;MQ=41.29;MQ0=15;MQRankSum=-0.685;QD=3.12;ReadPosRankSum=2.867;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:238,93:332:99:1067,0,4286 chrV 23031 . C G 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.827;DP=332;Dels=0.00;FS=2.579;HaplotypeScore=72.6298;MLEAC=1;MLEAF=0.500;MQ=41.53;MQ0=14;MQRankSum=-8.732;QD=0.19;ReadPosRankSum=-2.310;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:266,61:332:93:93,0,5206 chrV 23049 . A G 1248.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.733;DP=297;Dels=0.00;FS=96.624;HaplotypeScore=86.1103;MLEAC=1;MLEAF=0.500;MQ=41.85;MQ0=13;MQRankSum=-2.536;QD=4.20;ReadPosRankSum=3.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,97:297:99:1278,0,3636 chrV 23118 . G A 2366 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.8865;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=14;QD=19.08;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2399,273,0 chrV 23151 . T C 2525 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=6;QD=18.04;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2558,291,0 chrV 23160 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=3;QD=18.09;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2403,270,0 chrV 23309 . A G 3182 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.57;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3215,366,0 chrV 23494 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.3455;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.41;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3137,345,0 chrV 23976 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.577;QD=20.58;ReadPosRankSum=1.694;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3745,426,0 chrV 23990 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.26;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3428,399,0 chrV 24079 . A G 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.063;QD=22.52;ReadPosRankSum=1.648;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3693,420,0 chrV 24112 . A T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.9246;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.24;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3416,396,0 chrV 24354 . A G 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=97;Dels=0.00;FS=6.107;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.011;QD=21.77;ReadPosRankSum=2.885;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:3,93:97:99:2145,243,0 chrV 24392 . A T 2294 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.05;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2327,270,0 chrV 24411 . G T 2150 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.55;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2183,246,0 chrV 24419 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=19.70;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2161,243,0 chrV 24446 . T C 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.047;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.335;QD=19.54;ReadPosRankSum=1.674;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2358,264,0 chrV 24575 . T C 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=1.593;QD=20.20;ReadPosRankSum=1.505;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:3,111:116:99:2376,257,0 chrV 24596 . A G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=9.331;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.071;QD=19.55;ReadPosRankSum=2.389;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2418,282,0 chrV 24628 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.86;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2897,321,0 chrV 24661 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.25;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2766,312,0 chrV 24670 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.99;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2711,309,0 chrV 24749 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7581;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.94;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2617,297,0 chrV 24754 . A G 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=140;Dels=0.00;FS=6.113;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.748;QD=18.99;ReadPosRankSum=2.892;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2692,306,0 chrV 24870 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.74;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3563,390,0 chrV 24902 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.39;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3056,339,0 chrV 24966 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.11;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3881,423,0 chrV 25188 . G T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.28;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3655,417,0 chrV 25237 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.10;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2597,288,0 chrV 25332 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=64.4797;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=16.22;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1201,135,0 chrV 25407 . G A 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=6.329;HaplotypeScore=56.8265;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=1.495;QD=1.05;ReadPosRankSum=-0.214;SB=-4.205e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:12:110,12,0 chrV 25424 . A G 981 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=15.33;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1014,117,0 chrV 25874 . A C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=170;Dels=0.00;FS=8.507;HaplotypeScore=17.5722;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.478;QD=21.00;ReadPosRankSum=3.346;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:3570,411,0 chrV 25914 . G A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.83;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3416,381,0 chrV 25929 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.79;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3856,435,0 chrV 26265 . A C 4677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=203;Dels=0.00;FS=6.495;HaplotypeScore=10.9932;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.626;QD=23.04;ReadPosRankSum=2.400;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,196:203:99:4677,534,0 chrV 26313 . G T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.64;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4105,468,0 chrV 26322 . C G 3963.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.96;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,204:209:99:3963,465,0 chrV 26352 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.87;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4669,507,0 chrV 26413 . A G 4790.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.87;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4790,540,0 chrV 26549 . C T 4521.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.3027;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.55;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4521,519,0 chrV 26594 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.4437;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.90;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4535,492,0 chrV 26638 . G T 3024 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.24;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3057,342,0 chrV 26678 . C T 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.343;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.825;QD=18.73;ReadPosRankSum=-0.988;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2842,315,0 chrV 26685 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.21;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3049,333,0 chrV 27044 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=166;Dels=0.00;FS=4.198;HaplotypeScore=13.8639;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.668;QD=19.46;ReadPosRankSum=-1.456;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3263,372,0 chrV 27119 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.22;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3457,402,0 chrV 27260 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.88;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2810,309,0 chrV 27272 . A G 2384 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.38;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2417,276,0 chrV 27604 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.1861;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.74;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4320,480,0 chrV 27636 . C A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.58;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3951,441,0 chrV 27869 . C T 4974.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.30;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4974,561,0 chrV 27912 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.1541;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.64;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4825,552,0 chrV 27932 . C T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.97;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4193,474,0 chrV 28151 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=17.5809;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.802;QD=20.76;ReadPosRankSum=2.405;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3509,411,0 chrV 28312 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=144;Dels=0.00;FS=7.159;HaplotypeScore=12.0226;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.332;QD=20.40;ReadPosRankSum=2.381;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2970,333,0 chrV 28600 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.26;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3536,396,0 chrV 28649 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.58;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3349,378,0 chrV 28694 . T G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.353;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.601;QD=22.15;ReadPosRankSum=1.710;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3500,408,0 chrV 29872 . C G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.87;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3728,429,0 chrV 29909 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.29;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2854,312,0 chrV 29923 . C A 2627 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.05;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2660,303,0 chrV 30664 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.01;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3456,393,0 chrV 31247 . A G 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.070;QD=20.66;ReadPosRankSum=2.310;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1851,213,0 chrV 31263 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.04;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2127,231,0 chrV 31273 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.54;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1821,201,0 chrV 31651 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.31;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2036,225,0 chrV 31663 . A G 1793 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.15;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1826,201,0 chrV 31867 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.039;QD=23.70;ReadPosRankSum=1.691;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4053,468,0 chrV 32276 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=2.839;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.610;QD=22.50;ReadPosRankSum=2.418;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3578,405,0 chrV 33002 . A C 4441.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.01;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4441,516,0 chrV 33344 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.20;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2295,261,0 chrV 33348 . G T 2335 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.23;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2368,264,0 chrV 33706 . G C 1777 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.49;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1810,204,0 chrV 33782 . C A 1601 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.52;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1634,180,0 chrV 34050 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.58;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1926,213,0 chrV 34247 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=4.841;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;MQRankSum=1.261;QD=23.00;ReadPosRankSum=1.704;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2908,324,0 chrV 34622 . T C 1979 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2012,228,0 chrV 34703 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.318;QD=22.26;ReadPosRankSum=1.703;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,116:121:99:2726,318,0 chrV 34811 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3095,342,0 chrV 34985 . C A 3107 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.18;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3140,354,0 chrV 36820 . T C 5092.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.6223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5092,605,0 chrV 36958 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.482;QD=21.76;ReadPosRankSum=1.712;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3700,417,0 chrV 37041 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2772,309,0 chrV 37399 . T A 1326 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1359,150,0 chrV 37504 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1548,177,0 chrV 37747 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1441,159,0 chrV 38064 . A G 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=100;Dels=0.00;FS=3.100;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.424;QD=20.73;ReadPosRankSum=1.697;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2106,243,0 chrV 38431 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.039;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.668;QD=23.58;ReadPosRankSum=1.709;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3631,414,0 chrV 38716 . C T 4514.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4514,492,0 chrV 39304 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.84;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3516,393,0 chrV 39651 . T A 2482 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8158;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.96;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2515,279,0 chrV 40307 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=3.215;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.100;QD=23.83;ReadPosRankSum=1.672;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4171,474,0 chrV 40520 . C T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.27;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4584,522,0 chrV 40623 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=18.9489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.139;QD=21.03;ReadPosRankSum=1.715;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4248,480,0 chrV 40898 . G T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4248,492,0 chrV 41432 . C G 4540.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.4281;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.21;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4540,525,0 chrV 41545 . T C 5792.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.01;FS=0.000;HaplotypeScore=19.4302;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.70;SB=-3.613e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:5792,654,0 chrV 41566 . T C 5599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=294;Dels=0.00;FS=3.193;HaplotypeScore=21.0471;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.486;QD=19.04;ReadPosRankSum=1.720;SB=-3.586e+03 GT:AD:DP:GQ:PL 1/1:1,291:293:99:5599,642,0 chrV 41687 . A C 5545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=11.4061;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.007;QD=20.16;ReadPosRankSum=1.407;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:3,271:275:99:5545,627,0 chrV 41711 . C G 5495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;DP=277;Dels=0.00;FS=2.967;HaplotypeScore=9.9429;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.491;QD=19.84;ReadPosRankSum=2.163;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:2,272:277:99:5495,636,0 chrV 41961 . T A 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.536;HaplotypeScore=10.6572;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.290;QD=23.38;ReadPosRankSum=1.709;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3483,396,0 chrV 42216 . A C 1706 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.15;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1739,198,0 chrV 42217 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.86;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1806,198,0 chrV 42238 . A T 1689 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=16.72;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1722,198,0 chrV 42280 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.68;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1907,213,0 chrV 42646 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.0017;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.02;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4108,459,0 chrV 43070 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.19;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3762,429,0 chrV 43074 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.45;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3831,435,0 chrV 43179 . A G 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=4.931;HaplotypeScore=20.2038;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.638;QD=21.60;ReadPosRankSum=1.716;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4795,555,0 chrV 43260 . T C 6129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.666;DP=295;Dels=0.00;FS=7.491;HaplotypeScore=25.4245;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-2.532;QD=20.78;ReadPosRankSum=3.809;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:5,288:295:99:6129,734,0 chrV 43494 . A G 6400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=326;Dels=0.00;FS=8.611;HaplotypeScore=28.6197;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.460;QD=19.63;ReadPosRankSum=3.381;SB=-3.391e+03 GT:AD:DP:GQ:PL 1/1:4,322:326:99:6400,749,0 chrV 43578 . A G 6190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=302;Dels=0.00;FS=3.293;HaplotypeScore=14.4706;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.306;QD=20.50;ReadPosRankSum=1.709;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:1,300:302:99:6190,702,0 chrV 43594 . G A 6294.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=6.8536;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.26;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6294,690,0 chrV 43837 . C A 5906.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.32;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5906,648,0 chrV 43899 . G T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.91;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4432,504,0 chrV 43959 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.25;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4704,510,0 chrV 44019 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.78;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4116,471,0 chrV 44163 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.9200;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.319;QD=19.13;ReadPosRankSum=1.713;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3462,416,0 chrV 44334 . C T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.41;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4581,507,0 chrV 44344 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=205;Dels=0.00;FS=10.171;HaplotypeScore=7.8545;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.330;QD=19.97;ReadPosRankSum=2.907;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4093,474,0 chrV 44568 . T C 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=214;Dels=0.00;FS=6.824;HaplotypeScore=14.4806;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.976;QD=22.10;ReadPosRankSum=2.391;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:2,208:214:99:4730,540,0 chrV 44601 . T G 3977.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.19;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3977,456,0 chrV 44613 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.15;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3829,444,0 chrV 44763 . A G 4910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=217;Dels=0.00;FS=3.365;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.359;QD=22.63;ReadPosRankSum=1.716;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4910,555,0 chrV 44999 . C G 2377 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.49;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2410,279,0 chrV 45019 . C T 2561 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.27;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2594,285,0 chrV 45548 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3714,414,0 chrV 45665 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3006,324,0 chrV 45963 . T C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.416;QD=20.96;ReadPosRankSum=1.705;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2737,321,0 chrV 46022 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.26;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2946,324,0 chrV 46030 . C G 2602 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.02;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2635,306,0 chrV 46098 . C T 1713 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=7.3595;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.48;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1746,195,0 chrV 46310 . T C 2395 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.48;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2428,279,0 chrV 46379 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=69.8259;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=14.38;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1155,132,0 chrV 46589 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=23.46;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2637,291,0 chrV 46647 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.40;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2833,312,0 chrV 46832 . C T 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-1.943;QD=20.76;ReadPosRankSum=-0.554;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2752,315,0 chrV 46984 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.6479;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.01;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3935,441,0 chrV 47089 . T C 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=168;Dels=0.00;FS=2.645;HaplotypeScore=11.3248;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.728;QD=23.32;ReadPosRankSum=2.347;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3918,453,0 chrV 47165 . A G 4615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=206;Dels=0.00;FS=3.119;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.572;QD=22.40;ReadPosRankSum=1.630;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4615,528,0 chrV 48256 . A G 2828 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.1543;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.26;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2861,327,0 chrV 48384 . T C 2845 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.58;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2878,330,0 chrV 48489 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=5.427;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.444;QD=23.04;ReadPosRankSum=1.711;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3779,447,0 chrV 48581 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.80;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3597,414,0 chrV 48594 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.40;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3488,399,0 chrV 49397 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=176;Dels=0.00;FS=5.528;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.861;QD=17.47;ReadPosRankSum=1.712;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3107,354,0 chrV 49908 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=202;Dels=0.04;FS=0.000;HaplotypeScore=15.0291;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-1.107;QD=18.48;ReadPosRankSum=1.696;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3732,432,0 chrV 49917 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.5687;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.538;QD=18.06;ReadPosRankSum=2.413;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:3667,426,0 chrV 50125 . A T 5083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=221;Dels=0.00;FS=5.225;HaplotypeScore=13.4365;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.059;QD=23.00;ReadPosRankSum=3.405;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:4,216:221:99:5083,552,0 chrV 50151 . A C 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.736;QD=22.52;ReadPosRankSum=1.923;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4730,540,0 chrV 50279 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0556;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.54;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3358,381,0 chrV 50918 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2078,237,0 chrV 51087 . T C 2066 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.22;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2099,240,0 chrV 51264 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3349,372,0 chrV 51366 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.60;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2970,333,0 chrV 51501 . T C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=141;Dels=0.00;FS=7.463;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.968;QD=19.30;ReadPosRankSum=2.415;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2754,321,0 chrV 51579 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.388;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.462;QD=20.88;ReadPosRankSum=1.703;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2560,300,0 chrV 51780 . A G 2637 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.25;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2670,306,0 chrV 51785 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.24;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2714,315,0 chrV 51822 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.70;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3478,390,0 chrV 51944 . G A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.79;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4119,483,0 chrV 52713 . A T 1471 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.73;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1504,162,0 chrV 53297 . T C 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.761;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.027;QD=22.02;ReadPosRankSum=1.705;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2829,330,0 chrV 53456 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=21.89;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2638,297,0 chrV 53463 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=20.45;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2405,273,0 chrV 53501 . G C 1598 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=16.14;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1631,192,0 chrV 53505 . C T 1481 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.360;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;MQRankSum=-0.391;QD=15.92;ReadPosRankSum=1.136;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1514,165,0 chrV 53507 . A G 1396 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=94;Dels=0.00;FS=2.869;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;MQRankSum=-1.881;QD=14.85;ReadPosRankSum=2.342;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,89:94:99:1429,171,0 chrV 53537 . G T 1992 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=19.34;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2025,225,0 chrV 53565 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=19.98;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2970,333,0 chrV 53617 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.88;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3797,420,0 chrV 53618 . T G 3565.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=18.86;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3565,414,0 chrV 53693 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=14.47;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1480,177,0 chrV 53704 . T C 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;MQRankSum=-1.409;QD=15.46;ReadPosRankSum=1.686;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,74:79:99:1254,150,0 chrV 53713 . T C 1195 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=16.60;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1228,150,0 chrV 53718 . G T 1045 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=15.37;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1078,129,0 chrV 53732 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=15.73;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1323,156,0 chrV 53750 . A C 1467 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=0;QD=14.97;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1500,177,0 chrV 53764 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=17.12;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2173,234,0 chrV 53781 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=16.49;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2308,261,0 chrV 53785 . T A 2353 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=16.45;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2386,270,0 chrV 53876 . T G 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=112;Dels=0.00;FS=2.882;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-1.857;QD=19.56;ReadPosRankSum=2.318;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2224,258,0 chrV 53888 . G A 2048 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=20.48;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2081,231,0 chrV 54237 . T C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=4.472;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.361;QD=20.44;ReadPosRankSum=1.707;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2895,333,0 chrV 54384 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2597,291,0 chrV 54453 . A G 2241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=3.106;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=24.10;ReadPosRankSum=1.694;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2274,258,0 chrV 55841 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.31;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3948,435,0 chrV 55880 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.28;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3752,426,0 chrV 56000 . G A 5194.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.73;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5194,567,0 chrV 56129 . A C 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=0.740;QD=20.18;ReadPosRankSum=1.713;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3774,432,0 chrV 56149 . A C 3497.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.11;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3497,405,0 chrV 56166 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.50;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3386,372,0 chrV 56171 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=2.980;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.135;QD=16.61;ReadPosRankSum=2.385;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3222,372,0 chrV 56315 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.080;QD=23.36;ReadPosRankSum=1.712;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3994,456,0 chrV 56775 . C T 5409.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.92;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5409,588,0 chrV 56829 . G A 5593.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=24.6763;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.68;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5593,636,0 chrV 57131 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.9034;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.96;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4683,522,0 chrV 57203 . C T 5553.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.1631;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.57;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5553,603,0 chrV 57275 . C T 5346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.9418;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-1.574;QD=20.33;ReadPosRankSum=1.205;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5346,570,0 chrV 57281 . C T 5177.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.6647;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.38;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5177,564,0 chrV 57855 . T A 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=174;Dels=0.00;FS=6.157;HaplotypeScore=19.0169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.268;QD=20.44;ReadPosRankSum=3.031;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:6,168:174:99:3556,398,0 chrV 57941 . T C 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=180;Dels=0.00;FS=7.262;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.770;QD=22.43;ReadPosRankSum=2.339;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:4037,459,0 chrV 58183 . A G 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=4.325;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.644;QD=22.71;ReadPosRankSum=1.666;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3565,411,0 chrV 58346 . G C 4144.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.02;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,175:180:99:4144,474,0 chrV 58866 . T C 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=232;Dels=0.00;FS=13.176;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.985;QD=21.74;ReadPosRankSum=3.408;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:4,227:232:99:5044,579,0 chrV 59555 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.89;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1750,195,0 chrV 60057 . A G 4916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=3.368;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.959;QD=22.76;ReadPosRankSum=1.700;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4916,564,0 chrV 60381 . A G 4984.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.21;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4984,579,0 chrV 60891 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.40;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3072,348,0 chrV 60924 . A G 2985 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.17;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3018,345,0 chrV 61067 . C T 2258 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.2614;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=22.14;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2291,249,0 chrV 61081 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.30;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2266,261,0 chrV 61146 . A G 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.945;QD=20.97;ReadPosRankSum=1.701;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2361,267,0 chrV 61194 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.9003;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.66;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2459,282,0 chrV 61280 . C T 183.03 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=137.7880;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=1.16;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:24:216,24,0 chrV 61456 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.185;QD=21.87;ReadPosRankSum=1.706;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2942,342,0 chrV 61507 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.74;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3261,357,0 chrV 61667 . A G 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.005;DP=74;Dels=0.00;FS=16.763;HaplotypeScore=15.5134;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.586;QD=16.88;ReadPosRankSum=3.329;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:4,67:74:99:1282,150,0 chrV 61799 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.0047;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.89;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2574,282,0 chrV 61962 . T C 1984 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=22.55;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2017,234,0 chrV 61970 . G T 2058 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=22.37;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2091,228,0 chrV 61974 . T G 1934 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=20.80;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1967,225,0 chrV 62025 . A T 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=4.150;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=1.166;QD=22.90;ReadPosRankSum=-1.299;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2415,267,0 chrV 62117 . T C 1624 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=22.25;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1657,195,0 chrV 62145 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=3;QD=4.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,2:5:6:53,6,0 chrV 62233 . G T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;DP=96;Dels=0.00;FS=2.754;HaplotypeScore=15.7861;MLEAC=1;MLEAF=0.500;MQ=11.89;MQ0=77;MQRankSum=0.850;QD=0.24;ReadPosRankSum=0.550;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,6:96:53:53,0,155 chrV 62273 . G A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;DP=77;Dels=0.00;FS=56.967;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.98;MQ0=55;MQRankSum=1.336;QD=0.30;ReadPosRankSum=-2.538;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:62,14:77:53:53,0,161 chrV 62277 . G A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;DP=70;Dels=0.00;FS=56.967;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.71;MQ0=48;MQRankSum=0.200;QD=0.33;ReadPosRankSum=-0.868;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:57,13:70:53:53,0,151 chrV 62402 . T A 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=13.94;MQ0=75;MQRankSum=0.674;QD=0.50;ReadPosRankSum=0.796;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,38:90:75:75,0,203 chrV 62511 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=15.44;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1145,126,0 chrV 62547 . A T 2026 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=20.89;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2059,231,0 chrV 62627 . C A 2459 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=20.32;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2492,270,0 chrV 62637 . T C 2433 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=19.16;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2466,279,0 chrV 62652 . T G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=137;Dels=0.00;FS=2.576;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;MQRankSum=-1.022;QD=17.88;ReadPosRankSum=2.831;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2483,288,0 chrV 62717 . C G 2770 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.52;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2803,321,0 chrV 62914 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9986;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.58;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3033,333,0 chrV 63004 . G T 2645 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.04;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2678,297,0 chrV 63122 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.04;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4210,486,0 chrV 63146 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.879;QD=20.51;ReadPosRankSum=1.697;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4000,462,0 chrV 63176 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=4.038;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.208;QD=19.74;ReadPosRankSum=1.695;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3652,414,0 chrV 63253 . A C 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.7589;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.490;QD=21.28;ReadPosRankSum=1.663;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4278,486,0 chrV 63373 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.4169;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.74;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5094,573,0 chrV 63585 . T C 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=195;Dels=0.00;FS=6.505;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=0.677;QD=21.78;ReadPosRankSum=2.412;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4247,498,0 chrV 63707 . A G 3227.04 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=201;Dels=0.00;FS=4.714;HaplotypeScore=344.8142;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;MQRankSum=-0.056;QD=16.05;ReadPosRankSum=3.191;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:4,197:201:99:3260,387,0 chrV 63709 . C T 567 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.645;DP=197;Dels=0.00;FS=15.384;HaplotypeScore=341.6595;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;MQRankSum=0.895;QD=2.88;ReadPosRankSum=-8.108;SB=3.00 GT:AD:DP:GQ:PL 1/1:165,30:197:69:600,69,0 chrV 63712 . A T 151.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;DP=202;Dels=0.00;FS=10.330;HaplotypeScore=340.9143;MLEAC=1;MLEAF=0.500;MQ=42.08;MQ0=0;MQRankSum=0.580;QD=0.75;ReadPosRankSum=-6.849;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:176,26:202:99:181,0,2391 chrV 63726 . A C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=176;Dels=0.00;FS=12.317;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;MQRankSum=0.114;QD=13.16;ReadPosRankSum=2.926;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:2349,264,0 chrV 63748 . T C 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;MQRankSum=1.631;QD=8.09;ReadPosRankSum=1.707;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:1166,138,0 chrV 63751 . C T 1020 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;QD=7.85;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1053,117,0 chrV 63760 . T C 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.028;DP=131;Dels=0.00;FS=3.043;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=1;MQRankSum=1.693;QD=7.02;ReadPosRankSum=1.617;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:953,114,0 chrV 63763 . C T 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DP=130;Dels=0.00;FS=3.112;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=1;MQRankSum=1.625;QD=7.35;ReadPosRankSum=0.255;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:988,111,0 chrV 63847 . A C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.697;DP=215;Dels=0.00;FS=9.939;HaplotypeScore=14.9983;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=3;MQRankSum=1.639;QD=18.47;ReadPosRankSum=2.966;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:3,209:215:99:3971,450,0 chrV 64137 . T A 1492 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.1031;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=13.20;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1525,171,0 chrV 64152 . C A 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=95;Dels=0.00;FS=6.563;HaplotypeScore=31.5825;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;MQRankSum=0.914;QD=10.16;ReadPosRankSum=0.558;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:6,84:95:95:998,95,0 chrV 64237 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.34;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2573,285,0 chrV 64238 . A T 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=7.968;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.975;QD=21.86;ReadPosRankSum=1.674;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2634,291,0 chrV 64340 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.66;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2541,273,0 chrV 64421 . A T 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=6.128;HaplotypeScore=10.9357;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=1.077;QD=23.47;ReadPosRankSum=2.317;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4788,546,0 chrV 64525 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.25;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2770,300,0 chrV 64569 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.89;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2463,273,0 chrV 64624 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=139;Dels=0.00;FS=17.153;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-2.196;QD=19.92;ReadPosRankSum=2.935;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2802,321,0 chrV 64639 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.61;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2798,318,0 chrV 64648 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.72;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2579,285,0 chrV 64672 . C G 2055 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=17.72;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2088,240,0 chrV 64760 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2000,222,0 chrV 65008 . A C 3730.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.2038;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.56;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3730,429,0 chrV 65087 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.76;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3368,372,0 chrV 65190 . A G 1159 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.516;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.662;QD=16.80;ReadPosRankSum=2.898;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1192,138,0 chrV 65194 . G A 1229 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1262,138,0 chrV 65210 . A G 1962 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.484;QD=19.05;ReadPosRankSum=2.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:1995,225,0 chrV 65327 . T C 145.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;MQRankSum=-0.791;QD=12.09;ReadPosRankSum=1.423;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,10:12:21:178,21,0 chrV 65418 . G A 2121 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2154,243,0 chrV 65622 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.7275;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.211;QD=20.76;ReadPosRankSum=2.548;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3508,402,0 chrV 65697 . G C 3751.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.61;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:3751,438,0 chrV 65944 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8018;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.14;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3633,399,0 chrV 65985 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.0471;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.63;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3374,390,0 chrV 66105 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.88;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4333,483,0 chrV 66141 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.317;QD=21.74;ReadPosRankSum=1.695;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4043,471,0 chrV 66168 . G A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.5873;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.18;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3727,405,0 chrV 66177 . A T 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=185;Dels=0.00;FS=6.381;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.918;QD=18.49;ReadPosRankSum=2.197;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3421,390,0 chrV 66291 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.01;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4447,486,0 chrV 67131 . A G 1000 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.22;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,42:45:99:1033,117,0 chrV 67311 . T C 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=89;Dels=0.00;FS=2.475;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.943;QD=18.36;ReadPosRankSum=2.830;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1667,192,0 chrV 67327 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=16.69;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2069,234,0 chrV 67329 . A G 2237 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9701;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.04;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2270,264,0 chrV 67482 . A C 3121 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=19.6167;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.95;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3154,357,0 chrV 67758 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.94;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3949,438,0 chrV 67770 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=205;Dels=0.00;FS=3.032;HaplotypeScore=13.7189;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.737;QD=18.82;ReadPosRankSum=2.426;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:3858,441,0 chrV 67809 . G A 4724.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.09;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4724,522,0 chrV 68268 . A G 6775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=311;Dels=0.00;FS=3.256;HaplotypeScore=19.4074;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.364;QD=21.78;ReadPosRankSum=1.721;SB=-3.604e+03 GT:AD:DP:GQ:PL 1/1:1,308:311:99:6775,794,0 chrV 68547 . G A 6552.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=20.5492;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.62;SB=-3.469e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:6552,714,0 chrV 68643 . A G 6036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=318;Dels=0.00;FS=3.150;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.625;QD=18.98;ReadPosRankSum=1.655;SB=-3.527e+03 GT:AD:DP:GQ:PL 1/1:1,315:318:99:6036,702,0 chrV 68702 . C G 5416.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=7.8659;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.61;SB=-3.363e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:5416,633,0 chrV 68714 . C G 5310.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=14.6174;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.94;SB=-3.425e+03 GT:AD:DP:GQ:PL 1/1:0,292:296:99:5310,600,0 chrV 68718 . T G 4891.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=8.3367;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.22;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:4891,575,0 chrV 68798 . T G 6351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=14.7587;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.600;QD=22.05;ReadPosRankSum=-0.686;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:1,287:288:99:6351,740,0 chrV 68910 . T C 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=226;Dels=0.00;FS=15.401;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.231;QD=20.80;ReadPosRankSum=2.942;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:4701,554,0 chrV 68945 . G T 4403.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.2113;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.24;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4403,495,0 chrV 68996 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.02;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3937,441,0 chrV 69083 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=170;Dels=0.00;FS=2.843;HaplotypeScore=9.5285;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.019;QD=22.26;ReadPosRankSum=2.392;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3785,441,0 chrV 69209 . A C 1816 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.32;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1849,216,0 chrV 69229 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=17.12;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2105,234,0 chrV 69568 . T G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=166;Dels=0.00;FS=6.320;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.369;QD=20.65;ReadPosRankSum=2.359;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:2,161:166:99:3428,405,0 chrV 69584 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.86;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3366,375,0 chrV 69592 . G C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.10;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3276,381,0 chrV 69699 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=161;Dels=0.00;FS=4.583;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.066;QD=19.26;ReadPosRankSum=1.666;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3134,357,0 chrV 69711 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.61;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3112,345,0 chrV 69766 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.678;QD=19.39;ReadPosRankSum=1.682;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2709,321,0 chrV 69789 . T C 2818 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.35;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2851,327,0 chrV 70022 . C A 4613.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.03;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4613,501,0 chrV 70335 . A C 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.160;QD=21.25;ReadPosRankSum=1.652;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2796,315,0 chrV 70531 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.50;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1698,186,0 chrV 70852 . T C 5395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=245;Dels=0.00;FS=3.192;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.909;QD=22.02;ReadPosRankSum=1.689;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5395,618,0 chrV 70969 . A T 4468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=3.791;HaplotypeScore=11.3132;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.285;QD=18.85;ReadPosRankSum=1.717;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4468,516,0 chrV 71501 . G A 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.8314;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.578;QD=22.19;ReadPosRankSum=-0.757;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:3095,357,0 chrV 71671 . T C 2746 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2779,327,0 chrV 71903 . A G 2008 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.69;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2041,231,0 chrV 72037 . A C 2995 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.5243;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.35;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3028,345,0 chrV 72089 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=20.37;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3728,438,0 chrV 72102 . C G 4102.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=18.5022;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=19.82;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4102,474,0 chrV 72295 . T C 6035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=10.4671;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.945;QD=21.10;ReadPosRankSum=1.720;SB=-3.533e+03 GT:AD:DP:GQ:PL 1/1:1,285:286:99:6035,696,0 chrV 72326 . A G 6005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.811;DP=303;Dels=0.00;FS=10.936;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.883;QD=19.82;ReadPosRankSum=3.770;SB=-3.253e+03 GT:AD:DP:GQ:PL 1/1:5,297:303:99:6005,678,0 chrV 72339 . C T 5391.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=5.5159;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.27;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:5391,621,0 chrV 72385 . T C 5387.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=12.0648;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.51;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,287:291:99:5387,609,0 chrV 72502 . T C 5494.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.68;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5494,624,0 chrV 72694 . T G 4994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.457;QD=20.72;ReadPosRankSum=1.718;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:4994,587,0 chrV 72790 . A G 5815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=265;Dels=0.00;FS=3.724;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.722;QD=21.94;ReadPosRankSum=1.693;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:5815,680,0 chrV 72990 . T G 5463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=281;Dels=0.00;FS=3.281;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.512;QD=19.44;ReadPosRankSum=1.707;SB=-3.418e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:5463,627,0 chrV 73003 . T A 5003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=273;Dels=0.00;FS=2.274;HaplotypeScore=3.7518;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-0.018;QD=18.33;ReadPosRankSum=2.717;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:3,270:273:99:5003,552,0 chrV 73006 . C T 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=278;Dels=0.01;FS=0.000;HaplotypeScore=3.7518;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=1.042;QD=18.23;ReadPosRankSum=1.694;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:5068,564,0 chrV 73131 . G A 6113.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.3650;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.42;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6113,672,0 chrV 73426 . A T 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1514;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.220;QD=20.22;ReadPosRankSum=1.693;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1833,204,0 chrV 73460 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=3.062;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.960;QD=17.84;ReadPosRankSum=2.393;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1585,186,0 chrV 74196 . C T 5197.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.2678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5197,585,0 chrV 75084 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.76;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3829,438,0 chrV 75225 . A G 4317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=195;Dels=0.00;FS=2.953;HaplotypeScore=18.9037;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.096;QD=22.14;ReadPosRankSum=2.424;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,190:195:99:4317,492,0 chrV 75455 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=133;Dels=0.00;FS=6.118;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.412;QD=22.50;ReadPosRankSum=2.947;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:3026,348,0 chrV 75594 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.8247;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.51;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2140,234,0 chrV 75659 . G T 1843 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.61;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1876,207,0 chrV 75731 . T G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=78;Dels=0.00;FS=5.326;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.086;QD=22.05;ReadPosRankSum=1.686;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,74:78:99:1753,201,0 chrV 75935 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.05;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1938,222,0 chrV 75938 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.86;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1940,216,0 chrV 75968 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8449;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.27;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2465,285,0 chrV 76078 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.62;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2567,279,0 chrV 76157 . G A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.37;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3622,402,0 chrV 76198 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.511;DP=158;Dels=0.00;FS=4.895;HaplotypeScore=13.3656;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.845;QD=21.42;ReadPosRankSum=2.105;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:4,151:158:99:3384,370,0 chrV 76232 . C A 3133 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.91;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3166,354,0 chrV 76273 . A C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=138;Dels=0.00;FS=6.711;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.508;QD=22.81;ReadPosRankSum=2.343;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3181,369,0 chrV 76325 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=25.41;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3506,384,0 chrV 76357 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.386;QD=22.31;ReadPosRankSum=1.663;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3369,390,0 chrV 76382 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=148;Dels=0.00;FS=2.989;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.785;QD=23.10;ReadPosRankSum=2.101;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3419,396,0 chrV 76441 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.37;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2832,315,0 chrV 76528 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2891,318,0 chrV 76632 . A C 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=3.259;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.032;QD=21.86;ReadPosRankSum=1.700;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2394,279,0 chrV 76814 . C T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1397;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.25;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4074,453,0 chrV 76880 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=168;Dels=0.00;FS=3.021;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.031;QD=22.40;ReadPosRankSum=2.420;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3763,429,0 chrV 77036 . G T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.36;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3831,420,0 chrV 77300 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.07;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3635,408,0 chrV 77443 . A C 3436.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.21;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3436,390,0 chrV 77454 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.91;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3504,387,0 chrV 77645 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.22;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2988,333,0 chrV 77878 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=21.09;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1868,204,0 chrV 78008 . A T 2778 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2811,309,0 chrV 78092 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.0136;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.91;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4120,500,0 chrV 78261 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.451;QD=22.30;ReadPosRankSum=1.637;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4905,578,0 chrV 78504 . C G 4938.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.65;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4938,555,0 chrV 78757 . T A 3176 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.03;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3209,348,0 chrV 79309 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=18.18;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3197,354,0 chrV 79544 . T C 524 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.15;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:63:557,63,0 chrV 79549 . C T 529 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.04;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:63:562,63,0 chrV 80081 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=20.95;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3197,351,0 chrV 80083 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=20.10;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3088,351,0 chrV 80096 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-0.672;QD=19.68;ReadPosRankSum=1.661;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2926,339,0 chrV 80182 . T C 2315 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.82;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2348,267,0 chrV 80285 . G T 3017 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.10;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3050,336,0 chrV 80303 . T A 2761 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=20.01;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2794,318,0 chrV 80437 . G C 4641.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.6697;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.21;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4641,537,0 chrV 80485 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=23.52;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4610,495,0 chrV 80509 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.49;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4340,495,0 chrV 80617 . G C 5846.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=7.4247;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.34;SB=-3.376e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:5846,654,0 chrV 80633 . A G 5360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=270;Dels=0.00;FS=6.055;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.519;QD=19.85;ReadPosRankSum=2.974;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:3,266:270:99:5360,630,0 chrV 80728 . C G 4264.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.80;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4264,483,0 chrV 80737 . A G 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=2.961;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.359;QD=20.78;ReadPosRankSum=2.336;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4053,465,0 chrV 80874 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.929;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.0872;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=0.986;QD=19.15;ReadPosRankSum=1.854;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3811,399,0 chrV 80877 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.905;QD=18.33;ReadPosRankSum=1.551;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:3592,364,0 chrV 81049 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.64;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2056,228,0 chrV 81181 . A G 1280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.022;QD=16.62;ReadPosRankSum=2.385;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1313,153,0 chrV 81360 . T C 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.197;QD=21.56;ReadPosRankSum=2.371;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2081,243,0 chrV 81701 . A G 6162.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.96;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:0,323:325:99:6162,722,0 chrV 81713 . G A 6501.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.06;SB=-3.637e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:6501,706,0 chrV 81932 . T C 5625.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=25.0398;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.33;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,288:291:99:5625,659,0 chrV 82175 . C T 4437.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.26;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4437,498,0 chrV 82559 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.194;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.160;QD=21.51;ReadPosRankSum=1.675;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2636,300,0 chrV 82782 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.346;QD=21.26;ReadPosRankSum=1.703;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2648,303,0 chrV 82875 . T G 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=4.087;HaplotypeScore=6.3158;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.120;QD=12.53;ReadPosRankSum=1.690;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:2100,237,0 chrV 82923 . A T 2964 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.96;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2997,324,0 chrV 82970 . A G 2949 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.68;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2982,345,0 chrV 83007 . A G 2941 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.79;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2974,342,0 chrV 83236 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4726;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.58;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3498,381,0 chrV 83311 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.91;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3191,366,0 chrV 83329 . G T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.42;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3278,369,0 chrV 83473 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4173,468,0 chrV 83998 . A C 3953.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.0774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.47;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:3953,453,0 chrV 84168 . C T 6586.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.30;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6586,723,0 chrV 84265 . A G 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.9375;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.349;QD=23.03;ReadPosRankSum=1.665;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4791,543,0 chrV 84562 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.429;QD=19.79;ReadPosRankSum=1.629;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2052,240,0 chrV 84797 . G A 2428 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.28;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2461,276,0 chrV 84821 . A G 2561 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9498;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.66;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2594,294,0 chrV 84929 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=16.28;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1970,213,0 chrV 84939 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=122.7181;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-0.021;QD=12.99;ReadPosRankSum=2.799;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:3,142:145:99:1916,219,0 chrV 85009 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.90;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3887,426,0 chrV 85045 . T G 4313.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0263;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.23;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4313,489,0 chrV 85236 . G C 3818.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8787;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.68;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3818,450,0 chrV 85578 . C T 4281.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.62;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4281,471,0 chrV 85604 . C G 5028.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.45;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,220:224:99:5028,576,0 chrV 85693 . T C 5161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=29.8583;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.980;QD=21.78;ReadPosRankSum=1.688;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5161,608,0 chrV 85750 . C T 6769.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.59;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6769,741,0 chrV 86041 . C A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.0735;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.65;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4546,501,0 chrV 86233 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0404;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=18.55;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1257,141,0 chrV 86381 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.15;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1182,129,0 chrV 86601 . T C 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.444;QD=22.83;ReadPosRankSum=1.703;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2796,324,0 chrV 86742 . A T 2163 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.33;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2196,249,0 chrV 86770 . A G 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=3.043;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.428;QD=20.89;ReadPosRankSum=2.412;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2749,315,0 chrV 86816 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=92.2218;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.98;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2209,243,0 chrV 86861 . T C 2935 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=15.4895;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.90;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2968,336,0 chrV 86904 . T G 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.726;QD=23.16;ReadPosRankSum=2.422;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4192,492,0 chrV 87195 . A G 5484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=264;Dels=0.00;FS=9.677;HaplotypeScore=23.2362;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.697;QD=20.77;ReadPosRankSum=1.237;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:2,259:264:99:5484,634,0 chrV 87299 . C T 6671.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=20.6904;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.11;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,313:316:99:6671,756,0 chrV 87554 . T C 6136.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=24.2720;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.66;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:6136,722,0 chrV 87887 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.9215;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.75;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3749,432,0 chrV 88061 . C T 4783.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.9671;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.53;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4783,522,0 chrV 88121 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=166;Dels=0.00;FS=2.748;HaplotypeScore=12.1897;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.797;QD=22.76;ReadPosRankSum=2.390;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3778,435,0 chrV 88172 . C G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,173:180:99:3730,444,0 chrV 88403 . A T 5447.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.32;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5447,621,0 chrV 88481 . C G 4967.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.8997;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.98;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4967,584,0 chrV 88547 . C T 5377.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.48;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5377,582,0 chrV 88664 . T C 5184.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.4460;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.44;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5184,591,0 chrV 88700 . A G 5572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.472;QD=23.02;ReadPosRankSum=1.718;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5572,636,0 chrV 88935 . G A 5030.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.8377;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.62;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5030,552,0 chrV 89321 . T C 6459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=299;Dels=0.00;FS=2.873;HaplotypeScore=15.1848;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.589;QD=21.60;ReadPosRankSum=2.417;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:2,296:299:99:6459,747,0 chrV 89417 . T A 6163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=18.4339;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.529;QD=23.52;ReadPosRankSum=1.692;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:6163,678,0 chrV 89860 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=92.5509;MLEAC=1;MLEAF=0.500;MQ=56.60;MQ0=0;MQRankSum=-0.418;QD=0.12;ReadPosRankSum=-1.715;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:95,4:99:40:42,0,40 chrV 89953 . G T 3052 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.0562;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.96;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3085,339,0 chrV 90059 . T C 4941.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.75;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4941,570,0 chrV 90191 . C T 5381.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.5771;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.79;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5381,585,0 chrV 90215 . C A 5375.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.47;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:5375,597,0 chrV 90218 . A C 5127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=286;Dels=0.00;FS=8.690;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.046;QD=17.93;ReadPosRankSum=3.375;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:4,279:286:99:5127,608,0 chrV 90561 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.3686;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.85;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4090,488,0 chrV 90719 . C T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.7185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3912,432,0 chrV 90830 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=119;Dels=0.00;FS=10.186;HaplotypeScore=11.4442;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.297;QD=22.64;ReadPosRankSum=2.941;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2727,306,0 chrV 91067 . T C 5258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.0423;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.479;QD=23.37;ReadPosRankSum=1.686;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5258,606,0 chrV 91112 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.86;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4508,492,0 chrV 91115 . G C 4221.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.19;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:4221,483,0 chrV 91205 . G A 5412.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.3374;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.55;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5412,594,0 chrV 91237 . A G 5569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.283;QD=22.55;ReadPosRankSum=1.718;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5569,633,0 chrV 91352 . C T 4700.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.8341;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=23.15;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4700,516,0 chrV 91418 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.5360;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.39;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4321,474,0 chrV 91473 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=184;Dels=0.00;FS=10.230;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.731;QD=21.17;ReadPosRankSum=2.962;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3895,432,0 chrV 91637 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.89;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4586,516,0 chrV 91661 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.8124;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.105;QD=22.00;ReadPosRankSum=1.683;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4621,528,0 chrV 91715 . C T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.72;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3931,432,0 chrV 92248 . C A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6452;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.82;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3535,393,0 chrV 92327 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.94;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3877,426,0 chrV 92345 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=167;Dels=0.00;FS=2.789;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.052;QD=21.05;ReadPosRankSum=2.405;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3515,408,0 chrV 92672 . G A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.79;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4308,468,0 chrV 92864 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.634;DP=196;Dels=0.00;FS=12.249;HaplotypeScore=12.3403;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.262;QD=21.79;ReadPosRankSum=3.738;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:5,191:196:99:4270,492,0 chrV 93914 . T C 2148 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=21.27;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2181,249,0 chrV 93916 . A G 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.690;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;MQRankSum=-0.062;QD=21.56;ReadPosRankSum=2.400;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2167,249,0 chrV 94089 . G A 1682 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=81.3694;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=18.28;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1715,192,0 chrV 94095 . A T 1501 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=87.3288;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=16.49;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1534,174,0 chrV 94097 . G C 1433 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=88.3235;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=15.75;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1466,174,0 chrV 94126 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=17.70;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1608,177,0 chrV 94351 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.81;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2246,255,0 chrV 95043 . A G 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.163;QD=23.15;ReadPosRankSum=1.675;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4214,477,0 chrV 95430 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.78;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3387,387,0 chrV 95885 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.0184;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.59;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2784,330,0 chrV 95918 . A G 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=131;Dels=0.00;FS=2.593;HaplotypeScore=10.3445;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.254;QD=19.31;ReadPosRankSum=2.947;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2563,294,0 chrV 96109 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.53;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3209,354,0 chrV 96428 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.63;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2845,321,0 chrV 96439 . G T 2844 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.94;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2877,315,0 chrV 96648 . G C 2531 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.1516;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.80;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2564,294,0 chrV 96764 . G T 1920 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.07;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1953,216,0 chrV 97220 . T G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.514;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.376;QD=21.86;ReadPosRankSum=1.637;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3225,372,0 chrV 97322 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.73;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2945,327,0 chrV 97416 . G A 2918 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2951,336,0 chrV 97752 . A G 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.500;QD=18.44;ReadPosRankSum=1.706;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2523,291,0 chrV 97755 . T A 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=3.270;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.280;QD=18.61;ReadPosRankSum=1.682;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2601,288,0 chrV 98270 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.5302;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.68;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2651,294,0 chrV 98283 . A G 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=127;Dels=0.00;FS=3.038;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.403;QD=18.16;ReadPosRankSum=2.410;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2339,273,0 chrV 98339 . T A 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.472;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.765;QD=19.58;ReadPosRankSum=1.705;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2559,282,0 chrV 98381 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.315;QD=21.23;ReadPosRankSum=1.665;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3290,375,0 chrV 98507 . T A 3200 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.19;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3233,354,0 chrV 98854 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=186;Dels=0.00;FS=8.041;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;MQRankSum=-1.565;QD=20.21;ReadPosRankSum=2.423;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3759,438,0 chrV 98856 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=19.63;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3592,426,0 chrV 98872 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=193;Dels=0.00;FS=9.082;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;MQRankSum=1.063;QD=17.12;ReadPosRankSum=3.415;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:3304,378,0 chrV 98873 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;MQRankSum=0.689;QD=16.98;ReadPosRankSum=1.714;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3329,384,0 chrV 98904 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=16.86;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:3895,447,0 chrV 98906 . C G 4114.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=17.00;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:4114,471,0 chrV 98961 . C T 6243.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=10.0809;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=19.76;SB=-3.398e+03 GT:AD:DP:GQ:PL 1/1:0,314:316:99:6243,693,0 chrV 98997 . C T 5728.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=6.7155;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=17.90;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,315:320:99:5728,645,0 chrV 98999 . G A 5841.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=18.54;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,313:315:99:5841,651,0 chrV 99031 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=14.07;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:4123,483,0 chrV 99038 . A G 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=300;Dels=0.00;FS=7.262;HaplotypeScore=10.0781;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;MQRankSum=-1.103;QD=13.78;ReadPosRankSum=2.400;SB=-3.133e+03 GT:AD:DP:GQ:PL 1/1:2,295:300:99:4134,480,0 chrV 99091 . C G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.3767;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=16.40;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,240:245:99:4017,470,0 chrV 99120 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=15.68;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:3794,432,0 chrV 99124 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=14.38;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:3580,419,0 chrV 99132 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=258;Dels=0.00;FS=7.168;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;MQRankSum=0.438;QD=14.29;ReadPosRankSum=2.392;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:2,253:258:99:3687,443,0 chrV 99164 . A C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=300;Dels=0.00;FS=9.886;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;MQRankSum=-0.268;QD=13.81;ReadPosRankSum=2.930;SB=-3.586e+03 GT:AD:DP:GQ:PL 1/1:3,297:300:99:4142,480,0 chrV 99167 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=14.20;SB=-3.772e+03 GT:AD:DP:GQ:PL 1/1:0,310:310:99:4402,492,0 chrV 99179 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=6.4458;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=14.65;SB=-4.005e+03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:4863,567,0 chrV 99237 . G A 6935.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=21.47;SB=-4.022e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:6935,768,0 chrV 99302 . A G 5027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.034;DP=248;Dels=0.00;FS=10.759;HaplotypeScore=9.7000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=-0.351;QD=20.27;ReadPosRankSum=4.011;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:6,241:248:99:5027,573,0 chrV 99312 . G T 5060.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=20.82;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5060,582,0 chrV 99441 . T G 4499.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.3175;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.23;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4499,528,0 chrV 99522 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.02;FS=0.000;HaplotypeScore=27.6402;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.21;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4094,468,0 chrV 100025 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.93;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4403,474,0 chrV 100074 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.9341;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.04;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3163,348,0 chrV 100108 . A T 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-0.993;QD=22.99;ReadPosRankSum=1.594;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1757,198,0 chrV 100118 . C A 1539 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=22.30;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1572,180,0 chrV 100121 . T C 1496 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=23.02;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1529,177,0 chrV 100213 . T A 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.455;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.716;QD=17.16;ReadPosRankSum=1.640;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1320,144,0 chrV 100216 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.28;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1312,144,0 chrV 100307 . T C 1006 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=17.65;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1039,120,0 chrV 100352 . A G 388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=33;Dels=0.00;FS=7.084;HaplotypeScore=17.8454;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;MQRankSum=-1.729;QD=11.76;ReadPosRankSum=2.292;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:51:421,51,0 chrV 100360 . C T 103.26 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=14.8001;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=2.95;SB=-4.033e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:15:136,15,0 chrV 100373 . T C 267 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=9.89;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:36:300,36,0 chrV 100389 . T G 180.03 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.63;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:213,24,0 chrV 100391 . A G 195.01 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.09;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:27:228,27,0 chrV 100400 . T A 206.01 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=6.24;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:27:239,27,0 chrV 100406 . T G 222 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;QD=6.17;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:255,30,0 chrV 100451 . A G 830 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=16.94;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:863,96,0 chrV 100467 . A C 761 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=14.36;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:93:794,93,0 chrV 100635 . T G 1445 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.20;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1478,174,0 chrV 100681 . A T 2007 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.13;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2040,222,0 chrV 101285 . T A 2049 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.12;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2082,228,0 chrV 101365 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1954,225,0 chrV 101643 . T A 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=78;Dels=0.00;FS=11.444;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.013;QD=21.59;ReadPosRankSum=2.910;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1717,195,0 chrV 101667 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.48;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1837,210,0 chrV 101687 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.79;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1655,189,0 chrV 101716 . T C 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.329;QD=21.06;ReadPosRankSum=1.688;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1718,195,0 chrV 101819 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.58;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1678,192,0 chrV 101827 . A T 1714 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.40;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1747,192,0 chrV 102020 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6551;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.50;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3945,432,0 chrV 102185 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.0922;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.63;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3310,378,0 chrV 102203 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.56;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2810,324,0 chrV 102254 . C T 2730 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.78;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2763,318,0 chrV 102405 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=4.738;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.516;QD=24.80;ReadPosRankSum=1.706;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3298,369,0 chrV 102849 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.73;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3891,423,0 chrV 102887 . T C 3072 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0914;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.19;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3105,354,0 chrV 102999 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.00;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3680,408,0 chrV 103136 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=3.024;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.198;QD=22.31;ReadPosRankSum=2.415;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3224,363,0 chrV 103272 . A T 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.300;QD=22.80;ReadPosRankSum=1.706;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3066,336,0 chrV 103325 . A C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.407;QD=20.26;ReadPosRankSum=1.702;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2404,276,0 chrV 103334 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.60;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2340,267,0 chrV 103467 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.81;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3300,360,0 chrV 103548 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.96;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3944,429,0 chrV 103937 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=159;Dels=0.00;FS=5.806;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.185;QD=22.24;ReadPosRankSum=2.930;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3536,414,0 chrV 104269 . T C 2595 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.22;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2628,291,0 chrV 104270 . T C 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.289;QD=18.95;ReadPosRankSum=1.680;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2553,291,0 chrV 104393 . G A 2671 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.08;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2704,291,0 chrV 104420 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.23;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2845,315,0 chrV 104648 . T A 2448 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.88;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2481,273,0 chrV 105087 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7791;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.28;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3497,384,0 chrV 105130 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.54;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3166,345,0 chrV 105192 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.75;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3708,411,0 chrV 105311 . A C 2764 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.26;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2797,312,0 chrV 105319 . T C 2712 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.09;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2745,315,0 chrV 105345 . G T 2974 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.55;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3007,324,0 chrV 105369 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.54;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2642,291,0 chrV 105437 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.8931;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2938,324,0 chrV 105493 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=4.523;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.849;QD=24.41;ReadPosRankSum=1.709;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3734,423,0 chrV 105743 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.16;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3788,414,0 chrV 105746 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.3387;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.79;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3642,414,0 chrV 105816 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=20.16;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3467,387,0 chrV 105842 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.72;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3648,414,0 chrV 105854 . G C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.92;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:3405,399,0 chrV 106030 . G A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.31;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4347,498,0 chrV 106188 . G A 4510.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.8476;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.33;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4510,504,0 chrV 106333 . G T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.3567;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.16;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4585,519,0 chrV 106412 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1825;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.66;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3000,342,0 chrV 106422 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.60;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3276,357,0 chrV 106448 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.9004;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-1.492;QD=18.79;ReadPosRankSum=1.712;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3288,372,0 chrV 106478 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.8507;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.60;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,183:189:99:3326,375,0 chrV 106512 . A C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=145;Dels=0.00;FS=10.980;HaplotypeScore=132.9879;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=0.715;QD=17.63;ReadPosRankSum=2.174;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2590,300,0 chrV 106550 . A G 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.352;QD=15.96;ReadPosRankSum=1.704;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2012,231,0 chrV 106607 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.70;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3114,357,0 chrV 106808 . T G 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.208;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.805;QD=22.75;ReadPosRankSum=1.644;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3571,405,0 chrV 106822 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=163;Dels=0.00;FS=10.566;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.833;QD=22.42;ReadPosRankSum=2.957;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3655,411,0 chrV 106918 . C T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.70;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4232,468,0 chrV 107341 . C G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.47;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3640,411,0 chrV 107574 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.34;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3824,438,0 chrV 107580 . G T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.86;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3675,411,0 chrV 107634 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.6740;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.207;QD=18.87;ReadPosRankSum=1.638;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3509,402,0 chrV 107929 . A G 3110 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3143,360,0 chrV 108381 . G T 750 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.30;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:783,87,0 chrV 108662 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.68;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1507,168,0 chrV 108750 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.17;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2383,276,0 chrV 109005 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.171;DP=164;Dels=0.00;FS=8.264;HaplotypeScore=12.4435;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.943;QD=20.18;ReadPosRankSum=3.406;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3309,384,0 chrV 109461 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.8167;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.90;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4282,465,0 chrV 109559 . G A 4171.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.04;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4171,459,0 chrV 109995 . G T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4115,450,0 chrV 110241 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2538,279,0 chrV 110385 . C T 2007 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2040,228,0 chrV 110685 . G T 2152 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.65;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2185,246,0 chrV 110772 . A C 2240 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=18.51;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2273,258,0 chrV 110830 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=16.56;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2169,249,0 chrV 110956 . A T 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=-0.408;QD=22.18;ReadPosRankSum=1.676;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2761,303,0 chrV 110960 . C G 2414 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=20.99;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2447,279,0 chrV 111137 . T G 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=134;Dels=0.00;FS=6.120;HaplotypeScore=8.6554;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.784;QD=21.24;ReadPosRankSum=2.394;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2879,336,0 chrV 111209 . T C 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=117;Dels=0.00;FS=2.798;HaplotypeScore=9.9589;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.941;QD=19.56;ReadPosRankSum=2.407;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2322,267,0 chrV 111377 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.40;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3370,384,0 chrV 111402 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=155;Dels=0.00;FS=7.610;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.345;QD=21.10;ReadPosRankSum=2.385;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3271,369,0 chrV 111431 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.61;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3266,363,0 chrV 111615 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.22;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3288,375,0 chrV 111676 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=15.0639;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.93;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2440,270,0 chrV 111780 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.54;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3860,426,0 chrV 111854 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.3894;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.70;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3460,381,0 chrV 112269 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4574,528,0 chrV 112327 . G A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4249,468,0 chrV 112437 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.417;QD=23.19;ReadPosRankSum=1.714;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4359,504,0 chrV 113066 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.510;QD=20.15;ReadPosRankSum=2.416;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2995,345,0 chrV 113079 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.74;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2853,312,0 chrV 113148 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=16.6521;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.24;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2921,324,0 chrV 113457 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.65;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3291,378,0 chrV 113919 . A C 3307.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.67;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3307,378,0 chrV 113925 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.80;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3141,357,0 chrV 113964 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.58;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2754,306,0 chrV 114726 . A G 2323 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.45;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2356,264,0 chrV 114867 . T C 2203 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.71;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2236,258,0 chrV 114984 . T C 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=104;Dels=0.00;FS=2.994;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.675;QD=22.41;ReadPosRankSum=2.402;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2364,276,0 chrV 115024 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.21;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2600,300,0 chrV 115035 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.59;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2732,303,0 chrV 115090 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.44;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2434,270,0 chrV 115195 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=165;Dels=0.00;FS=7.892;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.726;QD=22.64;ReadPosRankSum=2.359;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3736,441,0 chrV 115452 . T A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.01;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3676,399,0 chrV 115473 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.72;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3340,363,0 chrV 115669 . T A 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=100;Dels=0.00;FS=2.623;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.883;QD=22.20;ReadPosRankSum=2.376;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2253,264,0 chrV 115890 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.06;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2497,273,0 chrV 115973 . G A 335 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=4.4838;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=4.09;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:81:42:368,42,0 chrV 115997 . T C 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=7.3147;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.639;QD=19.16;ReadPosRankSum=1.670;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2198,255,0 chrV 116086 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.35;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3409,393,0 chrV 116535 . T G 4297.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.5282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4297,483,0 chrV 116577 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.97;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4065,453,0 chrV 117013 . A C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.562;QD=23.16;ReadPosRankSum=1.704;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2858,324,0 chrV 117072 . C T 2303 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.2063;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.13;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2336,258,0 chrV 117134 . T C 2897 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2930,342,0 chrV 117318 . C T 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.5719;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.133;QD=21.35;ReadPosRankSum=1.377;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4205,477,0 chrV 117506 . A G 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.937;QD=22.64;ReadPosRankSum=1.704;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2795,324,0 chrV 117705 . T A 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=25.64;ReadPosRankSum=1.706;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3385,372,0 chrV 117889 . C T 4907.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.9995;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.41;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4907,549,0 chrV 118141 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=-0.935;QD=19.44;ReadPosRankSum=1.677;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2483,285,0 chrV 118149 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=19.77;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2089,231,0 chrV 118211 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=0.28;SB=-5.577e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:6:53,6,0 chrV 118286 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;QD=17.69;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1554,180,0 chrV 118304 . A G 244 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=3.64;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:33:277,33,0 chrV 118421 . T C 310 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=18.24;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:39:343,39,0 chrV 118484 . C A 1324 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=22.44;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1357,147,0 chrV 118608 . G A 306 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=9.87;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:39:339,39,0 chrV 118734 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.30;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2591,285,0 chrV 118743 . G A 2568 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.60;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2601,306,0 chrV 118974 . C T 6462.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.61;SB=-3.514e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6462,729,0 chrV 119169 . T A 5578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=248;Dels=0.00;FS=8.739;HaplotypeScore=12.7424;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.985;QD=22.49;ReadPosRankSum=2.410;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5578,609,0 chrV 119201 . C T 5254.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.55;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5254,573,0 chrV 119253 . C T 5142.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.8810;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.26;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5142,570,0 chrV 119334 . C T 4609.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.8055;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.93;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4609,522,0 chrV 119379 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.597;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.201;QD=19.61;ReadPosRankSum=1.696;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3725,432,0 chrV 119388 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.78;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3981,438,0 chrV 119409 . A G 4495.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.97;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4495,513,0 chrV 119453 . T C 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=228;Dels=0.00;FS=7.096;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.502;QD=19.65;ReadPosRankSum=2.417;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:4481,522,0 chrV 119512 . T A 3694.01 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.38;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3694,417,0 chrV 119513 . T G 3582.01 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.00;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3582,408,0 chrV 119517 . T C 3632.01 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=18.25;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3632,423,0 chrV 119673 . A G 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=139;Dels=0.00;FS=2.652;HaplotypeScore=18.5170;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.490;QD=22.07;ReadPosRankSum=2.343;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3101,357,0 chrV 119741 . T A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.75;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3372,369,0 chrV 120023 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.1029;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.73;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2749,306,0 chrV 120062 . C A 2809 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.64;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2842,312,0 chrV 120129 . A G 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.305;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.909;QD=18.21;ReadPosRankSum=1.590;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2273,264,0 chrV 120135 . T A 2234 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.13;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2267,252,0 chrV 120324 . G T 1275 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=15.18;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1308,150,0 chrV 120392 . T A 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.047;QD=19.35;ReadPosRankSum=1.639;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1465,162,0 chrV 120417 . A G 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=5.086;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.139;QD=16.88;ReadPosRankSum=1.663;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1738,198,0 chrV 120418 . A G 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=5.185;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.787;QD=17.05;ReadPosRankSum=1.697;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,98:102:99:1772,201,0 chrV 120588 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.49;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3568,390,0 chrV 120663 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.40;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3853,441,0 chrV 120900 . A T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.21;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3575,399,0 chrV 121032 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.594;QD=20.39;ReadPosRankSum=1.704;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2623,306,0 chrV 121096 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=25.19;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3804,414,0 chrV 121304 . T C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=139;Dels=0.00;FS=4.043;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=-0.013;QD=17.68;ReadPosRankSum=1.707;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2490,285,0 chrV 121308 . A T 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-0.709;QD=18.59;ReadPosRankSum=1.706;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2487,273,0 chrV 121339 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.52;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2478,273,0 chrV 121351 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=16.32;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2089,240,0 chrV 121371 . T A 2451 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.00;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2484,270,0 chrV 122148 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2139,234,0 chrV 122325 . A C 1795 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1828,204,0 chrV 122415 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.51;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1586,186,0 chrV 122503 . G A 792 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.75;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:87:825,87,0 chrV 122997 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.25;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3348,366,0 chrV 123248 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.30;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4058,453,0 chrV 123378 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=198;Dels=0.00;FS=2.561;HaplotypeScore=11.6181;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.975;QD=22.98;ReadPosRankSum=2.934;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4551,513,0 chrV 123491 . T C 5808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=267;Dels=0.00;FS=9.429;HaplotypeScore=8.7149;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.853;QD=21.75;ReadPosRankSum=2.974;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:5808,672,0 chrV 123513 . C G 5641.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.70;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5641,648,0 chrV 123734 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.26;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4362,480,0 chrV 124059 . G C 3644.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.3442;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.82;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3644,411,0 chrV 124202 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.42;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3096,342,0 chrV 124517 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.79;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2586,282,0 chrV 124905 . G A 4099.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=6.9334;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.46;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4099,450,0 chrV 124914 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=198;Dels=0.00;FS=6.221;HaplotypeScore=11.7896;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.540;QD=19.28;ReadPosRankSum=2.400;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:3818,447,0 chrV 124970 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.22;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4287,495,0 chrV 125141 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.8459;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.838;QD=21.64;ReadPosRankSum=1.716;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4631,540,0 chrV 125211 . A T 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=178;Dels=0.00;FS=9.711;HaplotypeScore=8.2147;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.537;QD=20.29;ReadPosRankSum=2.938;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3612,402,0 chrV 125221 . C G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.53;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3490,390,0 chrV 125279 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.59;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3680,408,0 chrV 125368 . A T 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.032;QD=18.93;ReadPosRankSum=1.714;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3559,396,0 chrV 125382 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.07;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3415,384,0 chrV 125388 . A G 3109 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=16.99;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3142,366,0 chrV 125566 . C G 4604.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.25;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4604,543,0 chrV 125756 . T A 4678.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4678,513,0 chrV 125939 . T C 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=172;Dels=0.00;FS=6.468;HaplotypeScore=12.9546;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-2.002;QD=22.00;ReadPosRankSum=2.363;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:3784,435,0 chrV 126071 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.1257;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.91;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4124,456,0 chrV 126254 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.585;QD=21.84;ReadPosRankSum=1.690;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3625,411,0 chrV 126294 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.06;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2616,300,0 chrV 126316 . T G 2269 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.45;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2302,261,0 chrV 126332 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.15;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2532,276,0 chrV 126393 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=4.393;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.957;QD=21.50;ReadPosRankSum=1.708;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3107,366,0 chrV 126427 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=4.187;HaplotypeScore=13.6274;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.287;QD=21.30;ReadPosRankSum=1.707;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3015,339,0 chrV 126641 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.94;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3430,390,0 chrV 126652 . A G 3159 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.38;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3192,357,0 chrV 126688 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.22;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3337,363,0 chrV 127024 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.8963;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.53;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4349,483,0 chrV 127042 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.9655;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.64;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4004,456,0 chrV 127050 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=190;Dels=0.00;FS=11.462;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.122;QD=19.62;ReadPosRankSum=2.899;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:3728,426,0 chrV 127286 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=209;Dels=0.00;FS=6.040;HaplotypeScore=17.2620;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-2.435;QD=20.97;ReadPosRankSum=2.947;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:4382,504,0 chrV 127516 . C T 4774.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.6220;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.10;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4774,549,0 chrV 127548 . G T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.27;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4584,513,0 chrV 127687 . G C 3717.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3141;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.13;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3717,426,0 chrV 128140 . A G 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=196;Dels=0.00;FS=3.527;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.018;QD=22.18;ReadPosRankSum=1.697;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4347,498,0 chrV 128257 . T A 2803 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.25;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2836,315,0 chrV 128550 . C T 762 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.59;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:795,90,0 chrV 128887 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.33;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2690,303,0 chrV 128953 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.32;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3438,399,0 chrV 129112 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.06;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3507,384,0 chrV 129286 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3055,348,0 chrV 129322 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=2.950;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=21.75;ReadPosRankSum=2.418;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3350,396,0 chrV 129481 . C T 5420.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.46;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5420,615,0 chrV 129523 . A G 4734.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.92;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4734,558,0 chrV 129628 . A G 5181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=226;Dels=0.00;FS=2.769;HaplotypeScore=13.6192;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.679;QD=22.92;ReadPosRankSum=2.341;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5181,591,0 chrV 129774 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.95;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3008,333,0 chrV 130108 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.12;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2784,306,0 chrV 130174 . T C 2686 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.76;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2719,312,0 chrV 130380 . T C 2300 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2333,273,0 chrV 130887 . G A 1234 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.28;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1267,144,0 chrV 131173 . C A 1874 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.52;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1907,210,0 chrV 131177 . A C 1785 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.85;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1818,210,0 chrV 131479 . T G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.1615;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=1.063;QD=16.69;ReadPosRankSum=2.204;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1869,213,0 chrV 131491 . C T 1256 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=5.6647;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=15.70;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1289,141,0 chrV 131492 . G T 1225 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=5.6647;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=15.31;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1258,141,0 chrV 131495 . T A 1157 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.845;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;MQRankSum=0.380;QD=13.94;ReadPosRankSum=1.310;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1190,115,0 chrV 131499 . T A 1112 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.660;DP=84;Dels=0.00;FS=3.115;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=-1.485;QD=13.24;ReadPosRankSum=1.485;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1145,129,0 chrV 132588 . G A 113.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=5.66;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,17:20:18:146,18,0 chrV 132643 . T A 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.562;QD=23.08;ReadPosRankSum=1.685;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1741,198,0 chrV 132762 . A G 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.192;QD=21.21;ReadPosRankSum=-0.682;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,98:101:99:2175,234,0 chrV 132767 . T A 2462 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.5686;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=23.67;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2495,270,0 chrV 133048 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.0188;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.60;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4135,477,0 chrV 133078 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=225;Dels=0.00;FS=10.729;HaplotypeScore=12.7818;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.710;QD=20.48;ReadPosRankSum=2.806;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:3,219:225:99:4608,528,0 chrV 133491 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.09;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4028,444,0 chrV 133566 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.2810;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.15;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4098,468,0 chrV 133686 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.69;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3051,348,0 chrV 134157 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3935,429,0 chrV 134361 . T C 5148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.543;QD=22.00;ReadPosRankSum=1.702;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5148,600,0 chrV 134484 . G A 6430.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.99;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6430,705,0 chrV 136032 . T G 4039.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5334;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=22.95;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4039,456,0 chrV 136262 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.02;FS=0.000;HaplotypeScore=12.8782;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=17.32;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2094,231,0 chrV 136376 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.56;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2103,231,0 chrV 136403 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.15;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2302,255,0 chrV 136419 . T A 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=105;Dels=0.00;FS=6.002;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.183;QD=22.01;ReadPosRankSum=2.818;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2344,255,0 chrV 136461 . C G 2040 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.94;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2073,237,0 chrV 136509 . A T 25.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;DP=97;Dels=0.00;FS=1.380;HaplotypeScore=84.4645;MLEAC=1;MLEAF=0.500;MQ=55.96;MQ0=0;MQRankSum=-0.068;QD=0.26;ReadPosRankSum=-4.632;SB=-5.811e+01 GT:AD:DP:GQ:PL 0/1:88,9:97:13:55,0,13 chrV 136561 . C A 2108 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0441;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.87;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2141,240,0 chrV 136691 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.47;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3131,336,0 chrV 136730 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.73;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2793,312,0 chrV 137133 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=231;Dels=0.00;FS=6.006;HaplotypeScore=14.0904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.057;QD=21.46;ReadPosRankSum=2.952;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:3,226:231:99:4958,582,0 chrV 137548 . C T 1801 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1834,201,0 chrV 137844 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=33.5533;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.69;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2874,330,0 chrV 137914 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2360,267,0 chrV 138269 . T C 2835 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.24;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2868,333,0 chrV 138302 . C A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.16;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3413,381,0 chrV 138369 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=177;Dels=0.00;FS=2.622;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.551;QD=21.37;ReadPosRankSum=2.407;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3782,432,0 chrV 138567 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.38;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3657,402,0 chrV 138600 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=4.065;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.034;QD=20.87;ReadPosRankSum=1.619;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3247,381,0 chrV 138652 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.471;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.709;QD=21.27;ReadPosRankSum=1.686;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3202,360,0 chrV 138653 . T C 3065 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.57;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3098,354,0 chrV 138799 . T C 2464 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=21.06;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2497,297,0 chrV 139492 . T G 4723.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.82;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4723,528,0 chrV 139520 . T C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=3.936;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.280;QD=21.35;ReadPosRankSum=1.680;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4227,474,0 chrV 139649 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=6.154;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.052;QD=20.11;ReadPosRankSum=1.653;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2728,303,0 chrV 139659 . A G 2488 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.99;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2521,288,0 chrV 140298 . G A 545 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=17.03;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:578,63,0 chrV 140395 . A T 1479 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=15.90;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1512,171,0 chrV 140430 . T A 1131 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=85;Dels=0.00;FS=2.846;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=0.913;QD=13.31;ReadPosRankSum=2.218;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1164,132,0 chrV 140432 . T A 1103 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.972;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=1.394;QD=13.45;ReadPosRankSum=1.352;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1136,132,0 chrV 140433 . C T 1121 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=13.35;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1154,132,0 chrV 140700 . C T 5876.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.2185;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.08;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5876,636,0 chrV 140834 . G A 6472.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.97;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6472,723,0 chrV 141117 . A G 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=136;Dels=0.00;FS=7.689;HaplotypeScore=9.1691;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.100;QD=20.01;ReadPosRankSum=2.413;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2755,324,0 chrV 141189 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.88;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3438,378,0 chrV 141218 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.50;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3465,384,0 chrV 141485 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.76;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3721,414,0 chrV 141605 . T G 2639 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.11;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2672,306,0 chrV 141778 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.803;DP=177;Dels=0.01;FS=7.188;HaplotypeScore=3.3558;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=2.213;QD=19.19;ReadPosRankSum=3.575;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:6,170:176:99:3396,372,0 chrV 141779 . T C 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=175;Dels=0.03;FS=5.377;HaplotypeScore=3.3558;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.994;QD=18.14;ReadPosRankSum=1.650;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3207,366,0 chrV 141918 . G A 4663.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4663,504,0 chrV 142188 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.4057;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.85;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4342,495,0 chrV 142227 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.8595;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.09;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3669,414,0 chrV 142565 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1623,177,0 chrV 142607 . C A 1656 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.66;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1689,186,0 chrV 143096 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.13;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2018,225,0 chrV 143292 . A G 2897 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.24;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2930,345,0 chrV 143305 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=170;Dels=0.00;FS=3.850;HaplotypeScore=6.7210;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.451;QD=15.91;ReadPosRankSum=1.711;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,165:170:99:2738,324,0 chrV 143606 . T A 4770.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.5928;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.78;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4770,561,0 chrV 143796 . C T 2846 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.33;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2879,318,0 chrV 143852 . T C 2272 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.93;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2305,276,0 chrV 144159 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3410,378,0 chrV 144265 . T C 2654 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.9087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2687,312,0 chrV 144521 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=165;Dels=0.00;FS=5.824;HaplotypeScore=12.0717;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.528;QD=23.08;ReadPosRankSum=2.908;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3808,432,0 chrV 144680 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3831,411,0 chrV 145151 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2327,258,0 chrV 145503 . A G 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.148;DP=98;Dels=0.00;FS=2.908;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.063;QD=21.56;ReadPosRankSum=2.400;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2146,243,0 chrV 145541 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.23;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3134,342,0 chrV 145569 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.50;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2823,321,0 chrV 145745 . T G 2050 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.40;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2083,240,0 chrV 145866 . A G 2414 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2447,285,0 chrV 146273 . T C 5182.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.93;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5182,588,0 chrV 146641 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.05;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4056,459,0 chrV 146845 . C G 2578 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.55;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2611,303,0 chrV 147672 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2559,294,0 chrV 148327 . T C 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.661;QD=25.07;ReadPosRankSum=1.709;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3810,435,0 chrV 148485 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.778;DP=152;Dels=0.00;FS=11.132;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.024;QD=22.91;ReadPosRankSum=2.237;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3482,379,0 chrV 148773 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.25;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4049,471,0 chrV 149213 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.0352;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.14;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3256,372,0 chrV 149714 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.430;QD=21.97;ReadPosRankSum=2.886;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3317,365,0 chrV 150005 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.55;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2762,309,0 chrV 150086 . A G 2030 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.60;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2063,243,0 chrV 150279 . C T 2333 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.01;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2366,270,0 chrV 150304 . T C 2178 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=16.25;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2211,255,0 chrV 150310 . A G 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=4.304;HaplotypeScore=3.4648;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.157;QD=17.20;ReadPosRankSum=1.706;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2321,267,0 chrV 150637 . C G 3818.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.09;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3818,432,0 chrV 150787 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.2136;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.09;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4388,477,0 chrV 150840 . T A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.73;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3614,399,0 chrV 151017 . T C 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=124;Dels=0.00;FS=4.087;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.099;QD=21.44;ReadPosRankSum=1.704;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2691,315,0 chrV 151335 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.66;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2006,231,0 chrV 151430 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.62;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1403,156,0 chrV 151441 . A G 1287 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.45;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1320,153,0 chrV 151454 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.94;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1272,138,0 chrV 151518 . T G 1684 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4009;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.05;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1717,195,0 chrV 151669 . C G 2412 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.97;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2445,276,0 chrV 152027 . C T 50.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=12.74;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:83,9,0 chrV 152075 . G A 277 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=16.29;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:310,36,0 chrV 152132 . C A 1313 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1346,147,0 chrV 152206 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.55;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1634,174,0 chrV 152265 . G A 674 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=69.3184;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=8.02;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:81:707,81,0 chrV 152335 . G A 2048 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=15.40;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2081,237,0 chrV 152616 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.8916;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.26;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4029,444,0 chrV 152630 . A T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.98;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3956,435,0 chrV 152800 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=22.8333;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.02;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3568,405,0 chrV 152858 . G A 3033 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=8.3109;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.47;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3066,339,0 chrV 153129 . A C 3949.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.9685;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.82;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3949,450,0 chrV 153241 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3269,369,0 chrV 153284 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.359;QD=22.85;ReadPosRankSum=1.670;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3816,432,0 chrV 153357 . A T 2615 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.5289;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.81;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2648,300,0 chrV 153493 . G T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4052,435,0 chrV 153551 . A G 2613 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.24;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2646,312,0 chrV 153808 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.505;QD=22.94;ReadPosRankSum=1.673;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4061,468,0 chrV 153840 . G A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.22;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3644,399,0 chrV 153844 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.50;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3462,384,0 chrV 153957 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.88;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3168,357,0 chrV 153989 . G T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.12;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3306,363,0 chrV 154013 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.385;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.336;QD=20.32;ReadPosRankSum=1.705;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2675,315,0 chrV 154269 . G T 2093 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.26;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2126,237,0 chrV 154354 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.511;QD=23.16;ReadPosRankSum=2.325;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2766,315,0 chrV 154390 . C G 3003 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3036,342,0 chrV 154437 . C A 3193 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.65;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3226,357,0 chrV 154531 . T A 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=166;Dels=0.00;FS=5.946;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.279;QD=22.40;ReadPosRankSum=2.958;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3718,426,0 chrV 154647 . A G 2691 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.23;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2724,321,0 chrV 154841 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=7.691;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.170;QD=23.60;ReadPosRankSum=2.385;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3611,408,0 chrV 154907 . A T 3180 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.151;DP=155;Dels=0.00;FS=3.643;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-1.106;QD=20.52;ReadPosRankSum=1.710;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3213,351,0 chrV 154914 . G A 3009 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.06;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3042,345,0 chrV 154915 . A C 2893 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.29;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2926,336,0 chrV 154958 . A C 2651 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.35;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2684,303,0 chrV 155081 . A T 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=173;Dels=0.00;FS=7.410;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.660;QD=24.33;ReadPosRankSum=2.421;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4209,471,0 chrV 155252 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.49;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4111,447,0 chrV 155570 . G T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.50;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3455,381,0 chrV 155613 . A T 2719 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.44;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2752,300,0 chrV 155901 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=21.29;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2141,234,0 chrV 155958 . T G 1732 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1765,204,0 chrV 156616 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.26;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2370,270,0 chrV 156762 . T C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.503;QD=23.45;ReadPosRankSum=1.703;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2871,330,0 chrV 156904 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.21;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3947,432,0 chrV 157088 . G A 4093.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.0470;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.68;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4093,456,0 chrV 157093 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.683;DP=216;Dels=0.00;FS=12.249;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.139;QD=18.09;ReadPosRankSum=3.815;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:5,209:216:99:3907,447,0 chrV 157149 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.15;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4372,486,0 chrV 157238 . G A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.84;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3815,420,0 chrV 157279 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=5.069;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=0.631;QD=22.15;ReadPosRankSum=1.686;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3345,387,0 chrV 157328 . A T 2894 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=22.97;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2927,324,0 chrV 157488 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.67;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1203,138,0 chrV 157769 . A G 1694 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.59;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1727,198,0 chrV 157792 . A G 1855 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.90;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1888,213,0 chrV 157820 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.93;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1985,225,0 chrV 157999 . A C 4348.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.1978;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.38;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4348,492,0 chrV 158386 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.143;QD=20.88;ReadPosRankSum=1.710;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3299,381,0 chrV 158684 . T C 4297.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.92;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4297,492,0 chrV 158690 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.57;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4206,471,0 chrV 158705 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.043;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.9167;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.668;QD=19.35;ReadPosRankSum=0.998;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3850,428,0 chrV 158931 . T A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.6491;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.60;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3629,402,0 chrV 159044 . A G 440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=115;Dels=0.02;FS=27.431;HaplotypeScore=24.3079;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.848;QD=3.83;ReadPosRankSum=-2.763;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:7,104:113:60:473,60,0 chrV 159092 . A G 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=125;Dels=0.00;FS=7.501;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.623;QD=17.57;ReadPosRankSum=2.371;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2229,264,0 chrV 159422 . T C 7448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=21.9624;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.210;QD=22.92;ReadPosRankSum=1.711;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,324:325:99:7448,843,0 chrV 159475 . C A 7508.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=13.4272;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.48;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:0,331:334:99:7508,858,0 chrV 159556 . T C 5040.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.91;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5040,573,0 chrV 159573 . A T 4661.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.42;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4661,507,0 chrV 159574 . G T 4686.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.36;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4686,513,0 chrV 159624 . G A 6918.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=19.4904;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.35;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:0,339:340:99:6918,756,0 chrV 159875 . A G 3136 SnpCluster AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=16.00;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3169,369,0 chrV 159876 . G A 3353.01 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=17.19;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3353,372,0 chrV 159882 . C G 3436.01 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=16.52;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:3436,405,0 chrV 160010 . T C 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=215;Dels=0.00;FS=6.292;HaplotypeScore=11.2931;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-0.886;QD=21.58;ReadPosRankSum=2.415;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:2,210:215:99:4640,522,0 chrV 160020 . G A 4493.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.71;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4493,510,0 chrV 160038 . T A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.5279;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.67;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4424,501,0 chrV 160192 . A C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=193;Dels=0.00;FS=2.919;HaplotypeScore=13.0064;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.637;QD=21.43;ReadPosRankSum=2.270;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4136,465,0 chrV 160248 . A C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=192;Dels=0.00;FS=5.664;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.395;QD=20.22;ReadPosRankSum=2.921;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:3883,453,0 chrV 160729 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=170;Dels=0.00;FS=8.886;HaplotypeScore=11.0410;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=2.109;QD=20.05;ReadPosRankSum=1.754;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,164:170:99:3409,396,0 chrV 160912 . T C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=120;Dels=0.00;FS=2.978;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.693;QD=20.39;ReadPosRankSum=2.408;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2480,285,0 chrV 161191 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.43;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3835,435,0 chrV 161593 . A G 2942 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2975,345,0 chrV 161767 . T A 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=149;Dels=0.00;FS=3.035;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.070;QD=21.50;ReadPosRankSum=2.351;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3237,366,0 chrV 162008 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.683;DP=169;Dels=0.00;FS=6.097;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.078;QD=21.53;ReadPosRankSum=2.958;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3638,411,0 chrV 162250 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.836;QD=20.51;ReadPosRankSum=1.715;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4122,474,0 chrV 162251 . G A 4315.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.26;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4315,483,0 chrV 162340 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.084;QD=19.71;ReadPosRankSum=1.714;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3686,423,0 chrV 162461 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.69;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3116,354,0 chrV 162474 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.85;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3223,360,0 chrV 163290 . A G 4681.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.13;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4681,528,0 chrV 163835 . T C 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=196;Dels=0.00;FS=3.033;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.024;QD=23.39;ReadPosRankSum=2.424;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4585,522,0 chrV 163997 . A G 4714.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.24;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4714,540,0 chrV 164225 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.319;QD=18.88;ReadPosRankSum=1.709;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2903,339,0 chrV 164372 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.55;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2059,231,0 chrV 164498 . T C 2131 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.69;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2164,249,0 chrV 164516 . T G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=111;Dels=0.00;FS=2.432;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.024;QD=19.82;ReadPosRankSum=3.331;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:4,107:111:99:2233,255,0 chrV 164551 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.49;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2246,243,0 chrV 164929 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.00;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2701,303,0 chrV 165159 . T C 2943 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.96;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2976,336,0 chrV 165547 . T G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=177;Dels=0.00;FS=2.685;HaplotypeScore=11.3843;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.104;QD=22.32;ReadPosRankSum=2.283;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3951,459,0 chrV 166218 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3001,327,0 chrV 166839 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=186;Dels=0.00;FS=10.279;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.206;QD=22.24;ReadPosRankSum=2.330;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4136,488,0 chrV 166933 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3543,408,0 chrV 167248 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2773,303,0 chrV 167641 . A C 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.802;QD=22.22;ReadPosRankSum=1.668;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2455,279,0 chrV 168412 . T C 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=3.274;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.579;QD=21.82;ReadPosRankSum=1.664;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4494,528,0 chrV 168779 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.56;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2857,318,0 chrV 168864 . T A 2744 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.7458;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2777,312,0 chrV 168930 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.95;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2930,330,0 chrV 168966 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.43;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3219,363,0 chrV 169005 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=138;Dels=0.00;FS=3.108;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.475;QD=21.38;ReadPosRankSum=1.706;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:2984,351,0 chrV 169109 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3008,333,0 chrV 169164 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.23;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3111,348,0 chrV 169277 . T C 2627 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.65;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2660,309,0 chrV 169431 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.87;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2000,216,0 chrV 169452 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.41;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1960,219,0 chrV 169611 . A G 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=4.661;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.222;QD=22.12;ReadPosRankSum=1.703;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2621,309,0 chrV 169740 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.535;QD=22.11;ReadPosRankSum=1.688;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3493,387,0 chrV 169761 . A G 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1727;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.794;QD=20.52;ReadPosRankSum=1.684;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3008,336,0 chrV 169796 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.17;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2514,282,0 chrV 170070 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1924;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.88;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3304,381,0 chrV 170316 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.16;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3767,417,0 chrV 170319 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.06;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3510,402,0 chrV 170607 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.89;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3984,453,0 chrV 170706 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.20;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4202,462,0 chrV 170928 . T C 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=211;Dels=0.00;FS=9.667;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.824;QD=20.33;ReadPosRankSum=2.929;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:4289,504,0 chrV 171381 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3908;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2388,264,0 chrV 171887 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.18;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3732,405,0 chrV 171917 . T A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.4911;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.80;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3257,366,0 chrV 172782 . G C 1978 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.82;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2011,234,0 chrV 172783 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.91;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2132,237,0 chrV 173217 . T G 3550.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.26;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3550,411,0 chrV 173318 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=3.769;HaplotypeScore=9.3424;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.754;QD=19.57;ReadPosRankSum=1.706;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2597,297,0 chrV 173362 . A T 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.4330;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.080;QD=19.56;ReadPosRankSum=1.626;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2576,288,0 chrV 173402 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.40;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3557,396,0 chrV 173645 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3036,339,0 chrV 173948 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.93;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3485,396,0 chrV 173989 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.2767;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.490;QD=23.04;ReadPosRankSum=1.710;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3686,420,0 chrV 174295 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.52;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3172,351,0 chrV 174381 . C A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.13;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3861,432,0 chrV 174469 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3294,360,0 chrV 174633 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=24.6395;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.22;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3883,450,0 chrV 174794 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.2218;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.83;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3777,438,0 chrV 175154 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=199;Dels=0.00;FS=5.604;HaplotypeScore=13.2528;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.753;QD=22.06;ReadPosRankSum=2.934;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4389,498,0 chrV 175389 . T C 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=197;Dels=0.00;FS=5.240;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=1.990;QD=21.97;ReadPosRankSum=2.903;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:4328,495,0 chrV 175411 . G A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=22.47;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4921,540,0 chrV 175575 . A G 4773.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.32;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4773,540,0 chrV 175619 . T C 677.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.256;DP=328;Dels=0.00;FS=2.935;HaplotypeScore=312.8970;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=0;MQRankSum=-2.717;QD=2.06;ReadPosRankSum=-3.149;SB=-1.616e+03 GT:AD:DP:GQ:PL 0/1:155,173:328:99:707,0,2050 chrV 175642 . G C 411.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;DP=315;Dels=0.00;FS=10.263;HaplotypeScore=205.7882;MLEAC=1;MLEAF=0.500;MQ=34.39;MQ0=0;MQRankSum=-3.232;QD=1.30;ReadPosRankSum=-2.021;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:248,66:315:99:441,0,1530 chrV 175643 . C T 367.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;DP=317;Dels=0.00;FS=8.012;HaplotypeScore=188.5689;MLEAC=1;MLEAF=0.500;MQ=34.61;MQ0=0;MQRankSum=-1.407;QD=1.16;ReadPosRankSum=-1.816;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:254,63:317:99:397,0,1586 chrV 175646 . A T 794.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DP=327;Dels=0.00;FS=12.142;HaplotypeScore=186.6074;MLEAC=1;MLEAF=0.500;MQ=35.66;MQ0=0;MQRankSum=-3.290;QD=2.43;ReadPosRankSum=-0.557;SB=-6.970e+02 GT:AD:DP:GQ:PL 0/1:214,113:327:99:824,0,1400 chrV 175655 . C T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.222;DP=339;Dels=0.00;FS=2.730;HaplotypeScore=108.0897;MLEAC=1;MLEAF=0.500;MQ=38.20;MQ0=0;MQRankSum=-2.225;QD=0.04;ReadPosRankSum=-0.237;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:291,48:339:44:44,0,2340 chrV 175660 . C G 394.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.727;DP=321;Dels=0.00;FS=7.154;HaplotypeScore=77.8577;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=0;MQRankSum=-4.252;QD=1.23;ReadPosRankSum=-3.345;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:242,79:321:99:424,0,2033 chrV 175661 . T C 432.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;DP=321;Dels=0.00;FS=7.154;HaplotypeScore=76.2803;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=0;MQRankSum=-3.430;QD=1.35;ReadPosRankSum=-3.812;SB=-3.590e+02 GT:AD:DP:GQ:PL 0/1:242,79:321:99:462,0,2068 chrV 175674 . T C 3048 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=39.0119;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=11.04;SB=-3.347e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:3081,351,0 chrV 175745 . C T 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DP=54;Dels=0.00;FS=5.471;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=57.65;MQ0=0;MQRankSum=2.127;QD=1.09;ReadPosRankSum=-3.552;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,10:54:89:89,0,666 chrV 175840 . T C 4344.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=22.3072;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=20.20;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4344,507,0 chrV 176297 . A G 2934 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.90;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2967,357,0 chrV 176453 . C T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.4820;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.37;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4027,456,0 chrV 176736 . A G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=112;Dels=0.00;FS=3.047;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.299;QD=21.49;ReadPosRankSum=2.405;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2440,276,0 chrV 176819 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.52;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3138,342,0 chrV 176974 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.68;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4059,465,0 chrV 177073 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.88;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3435,378,0 chrV 177093 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.63;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4023,441,0 chrV 177351 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.85;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2181,237,0 chrV 177453 . T A 1555 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=19.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1588,174,0 chrV 177849 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.07;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3233,369,0 chrV 178044 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.3500;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.39;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:3839,429,0 chrV 178287 . T C 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=186;Dels=0.00;FS=6.580;HaplotypeScore=8.2203;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.321;QD=23.08;ReadPosRankSum=2.330;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4293,489,0 chrV 178671 . T A 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.803;QD=21.13;ReadPosRankSum=1.682;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2949,348,0 chrV 178691 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.79;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3083,357,0 chrV 178728 . T A 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.430;QD=19.05;ReadPosRankSum=1.683;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2738,303,0 chrV 178729 . A C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.700;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-0.763;QD=18.47;ReadPosRankSum=1.708;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2674,303,0 chrV 178786 . T C 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.703;DP=212;Dels=0.00;FS=12.130;HaplotypeScore=10.2205;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.841;QD=19.34;ReadPosRankSum=3.740;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:5,206:212:99:4101,471,0 chrV 178894 . T G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=176;Dels=0.00;FS=7.393;HaplotypeScore=12.2127;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.891;QD=23.29;ReadPosRankSum=2.422;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4099,471,0 chrV 179014 . A G 4677.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.1789;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.86;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4677,546,0 chrV 179042 . G A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.31;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4009,435,0 chrV 179058 . A C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.707;DP=172;Dels=0.00;FS=17.677;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.673;QD=20.26;ReadPosRankSum=3.799;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:5,164:172:99:3485,399,0 chrV 179137 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.29;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3917,429,0 chrV 179143 . G T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.90;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3622,414,0 chrV 179281 . T C 4913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=207;Dels=0.00;FS=5.831;HaplotypeScore=13.2580;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.296;QD=23.73;ReadPosRankSum=2.927;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4913,558,0 chrV 179334 . T C 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.178;QD=23.18;ReadPosRankSum=1.680;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4659,537,0 chrV 179359 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.18;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3771,426,0 chrV 179485 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.164;QD=19.70;ReadPosRankSum=1.714;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3743,432,0 chrV 179488 . C A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.74;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3940,429,0 chrV 179545 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.10;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3650,420,0 chrV 179605 . T C 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.286;QD=23.49;ReadPosRankSum=1.694;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4299,489,0 chrV 179647 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.8251;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.90;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4008,456,0 chrV 179788 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.6887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4305,492,0 chrV 179823 . C A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.34;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4178,459,0 chrV 180216 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.38;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,145:150:99:3507,399,0 chrV 180284 . A G 5443.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.9951;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.67;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5443,618,0 chrV 180460 . C T 6069.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.90;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6069,669,0 chrV 181108 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.63;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2940,333,0 chrV 181135 . T C 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=134;Dels=0.00;FS=7.338;HaplotypeScore=5.5131;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.108;QD=21.75;ReadPosRankSum=2.412;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2947,336,0 chrV 181486 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9023;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.46;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4066,468,0 chrV 181705 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.2582;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.54;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3786,420,0 chrV 182242 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4069,444,0 chrV 182338 . T C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=101;Dels=0.00;FS=3.050;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.134;QD=18.48;ReadPosRankSum=1.767;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1899,219,0 chrV 182340 . A T 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=6.062;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.383;QD=18.89;ReadPosRankSum=2.241;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2035,225,0 chrV 182381 . A T 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.046;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.752;QD=19.09;ReadPosRankSum=1.697;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1923,213,0 chrV 182827 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3626,411,0 chrV 183157 . T G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=3.444;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.132;QD=22.58;ReadPosRankSum=1.713;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4065,465,0 chrV 183309 . C A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.27;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3351,375,0 chrV 183424 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.890;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.445;QD=20.77;ReadPosRankSum=1.691;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3573,414,0 chrV 183430 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.07;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3796,417,0 chrV 183549 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.3803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.39;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2263,255,0 chrV 183864 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.70;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3674,414,0 chrV 183910 . C G 4032.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4032,465,0 chrV 183957 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.6858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4357,504,0 chrV 184027 . A G 4579.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.90;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4579,525,0 chrV 184260 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=203;Dels=0.00;FS=3.709;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.429;QD=22.06;ReadPosRankSum=1.698;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4479,513,0 chrV 184291 . A C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.7609;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.070;QD=22.24;ReadPosRankSum=1.713;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4003,459,0 chrV 184363 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2675,306,0 chrV 184684 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=4.624;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.896;QD=22.21;ReadPosRankSum=1.702;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2631,297,0 chrV 185983 . T C 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.680;QD=22.55;ReadPosRankSum=1.670;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2604,303,0 chrV 186070 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.38;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2830,315,0 chrV 186229 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2978,330,0 chrV 186629 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.63;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3374,399,0 chrV 186890 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=146;Dels=0.00;FS=2.588;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.521;QD=23.14;ReadPosRankSum=2.952;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3379,393,0 chrV 187027 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.189;DP=149;Dels=0.00;FS=5.238;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=2.378;QD=22.48;ReadPosRankSum=3.377;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3349,387,0 chrV 187071 . G T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=25.07;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4838,531,0 chrV 187243 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=21.72;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4301,468,0 chrV 187252 . T C 4275.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=20.17;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4275,486,0 chrV 187305 . G A 5419.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.92;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5419,579,0 chrV 187309 . A C 4987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.152;QD=19.79;ReadPosRankSum=1.718;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,249:252:99:4987,555,0 chrV 187357 . G A 4594.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.69;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4594,510,0 chrV 187406 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=146;Dels=0.00;FS=2.959;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;MQRankSum=-0.631;QD=19.21;ReadPosRankSum=2.416;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2838,327,0 chrV 187426 . A G 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;MQRankSum=0.530;QD=16.98;ReadPosRankSum=1.675;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2087,240,0 chrV 187466 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=16.56;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1822,201,0 chrV 187482 . T A 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.680;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-1.006;QD=18.27;ReadPosRankSum=1.699;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1951,216,0 chrV 187519 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.98;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2216,258,0 chrV 187631 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=0.051;QD=19.55;ReadPosRankSum=1.698;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2008,231,0 chrV 187642 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=18.02;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1637,186,0 chrV 187648 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=17.73;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1593,177,0 chrV 187679 . C T 2274 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.95;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2307,252,0 chrV 187705 . A G 1972 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.43;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2005,228,0 chrV 187805 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.92;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2999,336,0 chrV 187837 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.69;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2482,285,0 chrV 187838 . A G 2409 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.82;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2442,282,0 chrV 188435 . A G 2534 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.42;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2567,294,0 chrV 188495 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=131;Dels=0.00;FS=9.647;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.454;QD=21.71;ReadPosRankSum=2.947;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2877,333,0 chrV 188861 . G C 5078.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.08;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5078,585,0 chrV 188873 . G A 4710.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.75;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4710,525,0 chrV 189254 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3142,342,0 chrV 189662 . A G 3090 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.91;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3123,372,0 chrV 189983 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.633;QD=20.92;ReadPosRankSum=1.683;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4455,522,0 chrV 190022 . G A 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.3849;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.544;QD=22.39;ReadPosRankSum=-0.761;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5351,591,0 chrV 190106 . T C 4884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=228;Dels=0.00;FS=7.020;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.961;QD=21.42;ReadPosRankSum=2.406;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:2,224:228:99:4884,552,0 chrV 190541 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=187;Dels=0.00;FS=6.728;HaplotypeScore=11.0578;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.337;QD=20.05;ReadPosRankSum=2.423;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3749,429,0 chrV 190754 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.77;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3103,348,0 chrV 190829 . A T 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.683;QD=20.32;ReadPosRankSum=1.683;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2919,336,0 chrV 191462 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=144;Dels=0.00;FS=6.946;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.647;QD=21.59;ReadPosRankSum=2.415;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3142,360,0 chrV 191863 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.30;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3937,438,0 chrV 192024 . T C 7093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=19.0585;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.376;QD=23.10;ReadPosRankSum=2.977;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:3,304:307:99:7093,810,0 chrV 192065 . G T 7587.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=15.7268;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.85;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:7587,843,0 chrV 192121 . G A 8701.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=25.9978;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.43;SB=-3.312e+03 GT:AD:DP:GQ:PL 1/1:0,387:388:99:8701,957,0 chrV 192221 . G A 11288.01 filter AC=2;AF=1.00;AN=2;DP=532;Dels=0.00;FS=0.000;HaplotypeScore=38.2171;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.22;SB=-6.018e+03 GT:AD:DP:GQ:PL 1/1:0,528:532:99:11288,1263,0 chrV 192670 . G A 4803.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=19.0008;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.10;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4803,546,0 chrV 192719 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=2;MQRankSum=0.927;QD=18.88;ReadPosRankSum=2.889;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:5,202:209:99:3945,374,0 chrV 193011 . T C 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=260;Dels=0.00;FS=6.033;HaplotypeScore=30.9067;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.148;QD=21.12;ReadPosRankSum=2.934;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:3,255:260:99:5492,647,0 chrV 193624 . T C 7431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.580;DP=353;Dels=0.00;FS=16.295;HaplotypeScore=30.5802;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.714;QD=21.05;ReadPosRankSum=4.820;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:8,343:353:99:7431,861,0 chrV 193678 . A G 8443.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=365;Dels=0.00;FS=4.573;HaplotypeScore=29.6979;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.628;QD=23.13;ReadPosRankSum=1.694;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:1,363:365:99:8443,963,0 chrV 193834 . G A 6964.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=18.1276;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.73;SB=-3.614e+03 GT:AD:DP:GQ:PL 1/1:0,352:352:99:6964,768,0 chrV 193876 . G A 7602.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.77;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,366:366:99:7602,855,0 chrV 193949 . T A 7240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;DP=316;Dels=0.00;FS=2.346;HaplotypeScore=35.5265;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.587;QD=22.91;ReadPosRankSum=0.724;SB=-3.453e+03 GT:AD:DP:GQ:PL 1/1:3,313:316:99:7240,763,0 chrV 194375 . A G 3064 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.0577;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.70;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3097,366,0 chrV 194625 . T A 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=4.771;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.210;QD=21.01;ReadPosRankSum=1.705;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2680,294,0 chrV 194646 . T G 2673 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.51;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2706,309,0 chrV 194739 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6717;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.96;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2548,288,0 chrV 194773 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.60;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2248,246,0 chrV 195341 . G A 7065.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.15;SB=-4.418e+03 GT:AD:DP:GQ:PL 1/1:0,369:369:99:7065,780,0 chrV 195356 . T C 6569.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=6.0102;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.364;QD=17.06;ReadPosRankSum=1.714;SB=-4.716e+03 GT:AD:DP:GQ:PL 1/1:1,384:385:99:6569,750,0 chrV 195368 . C G 6568.01 filter AC=2;AF=1.00;AN=2;DP=396;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.59;SB=-5.036e+03 GT:AD:DP:GQ:PL 1/1:0,394:396:99:6568,741,0 chrV 195440 . A G 7295.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=387;Dels=0.00;FS=2.814;HaplotypeScore=15.1286;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.373;QD=18.85;ReadPosRankSum=2.405;SB=-3.854e+03 GT:AD:DP:GQ:PL 1/1:2,383:387:99:7295,834,0 chrV 195460 . C T 7675.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=16.2366;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.04;SB=-4.167e+03 GT:AD:DP:GQ:PL 1/1:0,379:383:99:7675,858,0 chrV 195529 . A G 7060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=339;Dels=0.00;FS=5.445;HaplotypeScore=25.1979;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=-1.189;QD=20.83;ReadPosRankSum=2.907;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:3,333:339:99:7060,798,0 chrV 195746 . A G 5850.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=7.1386;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.16;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5850,672,0 chrV 195765 . A G 5460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.998;DP=274;Dels=0.00;FS=9.119;HaplotypeScore=17.8369;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.147;QD=19.93;ReadPosRankSum=3.243;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:4,267:274:99:5460,620,0 chrV 195830 . T G 4698.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.82;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4698,560,0 chrV 195872 . G C 4443.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.07;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4443,501,0 chrV 195875 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.007;DP=236;Dels=0.00;FS=19.030;HaplotypeScore=5.2960;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.469;QD=19.08;ReadPosRankSum=4.176;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:6,230:236:99:4503,516,0 chrV 195975 . T C 5978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=276;Dels=0.00;FS=3.025;HaplotypeScore=24.7278;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.409;QD=21.66;ReadPosRankSum=2.369;SB=-3.433e+03 GT:AD:DP:GQ:PL 1/1:2,272:276:99:5978,675,0 chrV 196106 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=194;Dels=0.00;FS=4.365;HaplotypeScore=5.4782;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-0.375;QD=18.70;ReadPosRankSum=1.714;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3627,423,0 chrV 196110 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.105;QD=18.64;ReadPosRankSum=1.694;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3412,396,0 chrV 196190 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=207;Dels=0.00;FS=2.800;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.341;QD=19.85;ReadPosRankSum=2.354;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4109,465,0 chrV 196269 . G C 3289.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.79;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3289,375,0 chrV 196271 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.24;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3425,369,0 chrV 196352 . T C 2210 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=17.13;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2243,270,0 chrV 196355 . T C 2224 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=17.51;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2257,267,0 chrV 196385 . A G 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=0.239;QD=14.15;ReadPosRankSum=2.359;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1561,183,0 chrV 196391 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=15.38;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1525,168,0 chrV 196478 . T C 1891 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.1712;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.01;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1924,219,0 chrV 196526 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=22.70;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2644,285,0 chrV 196554 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.23;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1995,228,0 chrV 196666 . A T 1498 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.16;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1531,171,0 chrV 196708 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.58;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1778,207,0 chrV 196832 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.25;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2288,258,0 chrV 196983 . T C 2536 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.66;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2569,291,0 chrV 196986 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.43;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2578,288,0 chrV 197103 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=146;Dels=0.00;FS=6.071;HaplotypeScore=12.5531;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=2.331;QD=22.14;ReadPosRankSum=2.924;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3268,372,0 chrV 197145 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=13.8368;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.36;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3458,381,0 chrV 197322 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=145;Dels=0.00;FS=3.030;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.585;QD=21.99;ReadPosRankSum=2.416;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3221,369,0 chrV 197352 . T C 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=6.114;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.061;QD=20.79;ReadPosRankSum=2.362;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2965,336,0 chrV 197361 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.03;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3057,345,0 chrV 197415 . A G 2574 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.27;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2607,306,0 chrV 197493 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0419;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.12;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2950,318,0 chrV 197502 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.80;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3153,342,0 chrV 197916 . C A 3057 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.53;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3090,351,0 chrV 198126 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.07;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2703,294,0 chrV 198538 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.84;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1541,177,0 chrV 198629 . A G 595 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=16.53;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:72:628,72,0 chrV 198669 . G T 824 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.17;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:857,99,0 chrV 198671 . G A 857 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.85;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:890,99,0 chrV 198680 . G A 728 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=15.49;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:90:761,90,0 chrV 198865 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.4485;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.89;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2070,234,0 chrV 198962 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5854;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.03;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3591,405,0 chrV 199099 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.45;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4332,489,0 chrV 199227 . A T 4464.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9711;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.37;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4464,495,0 chrV 199270 . A G 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.870;QD=21.38;ReadPosRankSum=1.715;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4383,513,0 chrV 199337 . G A 5779.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.40;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5779,657,0 chrV 200053 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.799;QD=22.71;ReadPosRankSum=1.688;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3565,411,0 chrV 200070 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.67;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3401,372,0 chrV 200245 . G A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.98;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4149,465,0 chrV 200268 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=3.031;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.031;QD=23.11;ReadPosRankSum=2.420;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3883,441,0 chrV 200354 . A C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.608;QD=20.14;ReadPosRankSum=1.711;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3383,387,0 chrV 200362 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.81;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3371,369,0 chrV 200737 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.68;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4343,477,0 chrV 200794 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.04;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3871,426,0 chrV 200851 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.17;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4496,486,0 chrV 200885 . T C 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=207;Dels=0.00;FS=6.255;HaplotypeScore=6.6496;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.528;QD=21.97;ReadPosRankSum=2.367;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4547,516,0 chrV 200908 . T C 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=231;Dels=0.00;FS=3.667;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.805;QD=20.63;ReadPosRankSum=1.686;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:4766,563,0 chrV 201006 . G T 4837.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.2125;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.25;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4837,528,0 chrV 201879 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.59;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4145,474,0 chrV 202172 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.787;QD=22.98;ReadPosRankSum=1.703;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2836,324,0 chrV 202232 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.54;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3436,381,0 chrV 202285 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=134;Dels=0.00;FS=2.589;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.752;QD=23.04;ReadPosRankSum=2.873;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3121,360,0 chrV 202470 . C T 4672.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.46;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4672,510,0 chrV 202626 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.3619;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.86;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4329,483,0 chrV 203184 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=2.662;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.500;QD=20.96;ReadPosRankSum=2.362;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2989,351,0 chrV 203211 . A G 2712 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.20;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2745,315,0 chrV 203226 . T C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.630;QD=15.86;ReadPosRankSum=1.710;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2476,288,0 chrV 203238 . C T 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.0007;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-1.711;QD=16.00;ReadPosRankSum=-0.290;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2609,294,0 chrV 203277 . T C 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=3.362;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.135;QD=16.85;ReadPosRankSum=1.713;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3099,357,0 chrV 203706 . C A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.94;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3663,423,0 chrV 203832 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3817,438,0 chrV 203996 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3867,438,0 chrV 204261 . T C 4866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=227;Dels=0.00;FS=3.266;HaplotypeScore=14.1810;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.969;QD=21.44;ReadPosRankSum=1.702;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4866,561,0 chrV 204525 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.42;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3699,408,0 chrV 204636 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.28;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3012,330,0 chrV 204868 . C G 3025 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.6923;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.15;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3058,354,0 chrV 204947 . C T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.27;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3560,402,0 chrV 205086 . T G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.05;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4133,468,0 chrV 205211 . G A 5005.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.50;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5005,543,0 chrV 205225 . G A 4801.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.08;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4801,519,0 chrV 205406 . T C 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=4.374;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.526;QD=21.85;ReadPosRankSum=1.700;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4808,564,0 chrV 206276 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.01;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3676,420,0 chrV 206288 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=165;Dels=0.00;FS=10.646;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.614;QD=19.59;ReadPosRankSum=2.908;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3269,375,0 chrV 206666 . G T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.79;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3334,381,0 chrV 206836 . G C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.61;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3301,381,0 chrV 207170 . C T 154.06 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=4.40;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:21:187,21,0 chrV 207285 . A C 496 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=19.84;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:60:529,60,0 chrV 207304 . C G 554 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=18.47;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:587,69,0 chrV 207328 . C T 737 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=18.90;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:770,84,0 chrV 207581 . T C 943 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.96;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:976,114,0 chrV 207710 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=111;Dels=0.00;FS=10.823;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.107;QD=23.15;ReadPosRankSum=2.383;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2603,303,0 chrV 208304 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.15;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1885,210,0 chrV 208343 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1542,168,0 chrV 208385 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1720,186,0 chrV 208758 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2922,324,0 chrV 209424 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=20.10;ReadPosRankSum=1.693;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3557,417,0 chrV 209789 . T C 6544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=290;Dels=0.00;FS=3.018;HaplotypeScore=13.4344;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.563;QD=22.57;ReadPosRankSum=2.390;SB=-3.612e+03 GT:AD:DP:GQ:PL 1/1:2,288:290:99:6544,747,0 chrV 210347 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.297;QD=23.09;ReadPosRankSum=1.673;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4064,456,0 chrV 210793 . T C 4831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4196;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.299;QD=24.16;ReadPosRankSum=1.697;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4831,552,0 chrV 211386 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=23.08;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3601,399,0 chrV 211413 . G T 3005 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=18.66;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3038,339,0 chrV 211419 . T C 2849 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=0.046;QD=18.74;ReadPosRankSum=1.687;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2882,318,0 chrV 211420 . T C 2816 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=18.53;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2849,318,0 chrV 211559 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.6588;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.12;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3999,465,0 chrV 211770 . C A 3152 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.15;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3185,366,0 chrV 211989 . A T 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;MQRankSum=-1.318;QD=21.57;ReadPosRankSum=1.694;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2017,222,0 chrV 212585 . C A 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=103;Dels=0.00;FS=4.815;HaplotypeScore=11.0886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.247;QD=22.64;ReadPosRankSum=-0.139;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,99:103:99:2365,261,0 chrV 212818 . T C 2799 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2832,324,0 chrV 212901 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.0730;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3745,429,0 chrV 212944 . T C 3118 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=17.3072;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.38;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3151,357,0 chrV 213244 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.73;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1651,183,0 chrV 213277 . T A 1220 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.18;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1253,141,0 chrV 213399 . T C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.598;QD=22.70;ReadPosRankSum=2.379;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2416,273,0 chrV 213423 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.47;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1937,213,0 chrV 213725 . A G 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.520;QD=20.93;ReadPosRankSum=2.394;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3704,426,0 chrV 213822 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.70;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4029,444,0 chrV 213929 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.20;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2964,321,0 chrV 214752 . G T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.12;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3273,369,0 chrV 214893 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.5357;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.100;QD=23.24;ReadPosRankSum=-0.020;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3950,415,0 chrV 215059 . G C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.94;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3445,393,0 chrV 215084 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.85;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3885,432,0 chrV 215137 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.13;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3851,432,0 chrV 215203 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.66;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2726,303,0 chrV 215227 . A G 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=133;Dels=0.00;FS=6.094;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.214;QD=18.99;ReadPosRankSum=2.947;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2559,291,0 chrV 215441 . A G 4894.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.64;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4894,564,0 chrV 215491 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.80;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3974,435,0 chrV 216124 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.70;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2712,297,0 chrV 216211 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3032,330,0 chrV 216261 . C G 2597 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.20;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2630,309,0 chrV 216469 . T C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=3.033;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.227;QD=21.64;ReadPosRankSum=2.399;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3193,366,0 chrV 216589 . C G 3722.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.2998;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.27;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3722,435,0 chrV 216733 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3867,426,0 chrV 216898 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.22;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3733,429,0 chrV 217039 . T C 2957 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2990,351,0 chrV 217294 . T A 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=139;Dels=0.00;FS=6.082;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.370;QD=22.83;ReadPosRankSum=2.921;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3206,328,0 chrV 217777 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=61.63;MQ0=0;QD=20.26;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1613,189,0 chrV 218012 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.79;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3256,354,0 chrV 218129 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3533,387,0 chrV 218253 . A C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=147;Dels=0.00;FS=3.011;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.187;QD=19.99;ReadPosRankSum=2.416;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2971,354,0 chrV 218489 . C G 2621 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.31;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2654,303,0 chrV 219230 . T C 3014 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.18;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3047,351,0 chrV 219256 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.19;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2724,309,0 chrV 219281 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.26;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2132,234,0 chrV 219306 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=20.58;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2441,267,0 chrV 219359 . T C 2817 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=19.70;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2850,333,0 chrV 219365 . T C 2659 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.55;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2692,306,0 chrV 219410 . A T 2435 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.17;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2468,273,0 chrV 219603 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.28;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2991,333,0 chrV 219608 . T C 2928 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.52;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2961,342,0 chrV 219959 . G A 5185.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.0677;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.43;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5185,564,0 chrV 220073 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.3861;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.71;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4320,495,0 chrV 220108 . C T 4269.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=20.5782;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.95;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4269,471,0 chrV 220166 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=185;Dels=0.00;FS=6.092;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.038;QD=21.92;ReadPosRankSum=2.929;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:4055,459,0 chrV 220626 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.4622;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.28;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2750,321,0 chrV 220720 . G T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.04;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3350,390,0 chrV 220973 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.270;HaplotypeScore=14.9151;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.301;QD=22.35;ReadPosRankSum=1.707;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3162,366,0 chrV 221406 . A G 378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.632;DP=156;Dels=0.00;FS=1.654;HaplotypeScore=18.9954;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.377;QD=2.42;ReadPosRankSum=3.223;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:6,149:156:51:411,51,0 chrV 221538 . T G 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.687;QD=23.39;ReadPosRankSum=1.664;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3578,417,0 chrV 221686 . C T 2635 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.25;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2668,294,0 chrV 221699 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.53;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2435,276,0 chrV 221810 . C A 1894 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.0758;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=13.82;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:1927,213,0 chrV 221827 . C G 1752 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.4474;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=12.17;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:1785,210,0 chrV 221992 . T G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=137;Dels=0.00;FS=2.833;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.118;QD=21.15;ReadPosRankSum=2.413;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2930,333,0 chrV 222207 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.2057;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.23;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4368,498,0 chrV 222282 . T C 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=152;Dels=0.00;FS=7.226;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-1.147;QD=17.64;ReadPosRankSum=2.319;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:2714,315,0 chrV 222290 . C A 2445 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=16.63;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2478,291,0 chrV 222293 . A C 2586 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=16.68;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2619,297,0 chrV 222394 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.59;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3756,423,0 chrV 222430 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.827;QD=17.97;ReadPosRankSum=2.418;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:2,154:157:99:2854,330,0 chrV 222472 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=16.0593;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.29;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2193,243,0 chrV 222545 . A C 2753 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.34;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2786,315,0 chrV 222592 . T A 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.247;QD=21.77;ReadPosRankSum=1.670;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2471,276,0 chrV 222851 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=172;Dels=0.00;FS=8.099;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=2.350;QD=20.97;ReadPosRankSum=2.421;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3607,414,0 chrV 222941 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.9635;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=17.29;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2125,240,0 chrV 223004 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.21;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1763,195,0 chrV 223022 . G C 1816 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.92;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1849,210,0 chrV 223164 . C T 756 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=13.03;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:90:789,90,0 chrV 223173 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=14.71;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:783,90,0 chrV 223241 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.11;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1249,138,0 chrV 223251 . T C 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=2.643;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.524;QD=20.66;ReadPosRankSum=2.367;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1252,147,0 chrV 223252 . C A 1282 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.37;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1315,147,0 chrV 223802 . G A 5027.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.3464;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5027,555,0 chrV 224276 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.33;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3506,417,0 chrV 224528 . G C 2991 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=18.2282;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.07;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3024,354,0 chrV 224681 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.54;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3012,339,0 chrV 225229 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.23;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2478,285,0 chrV 225397 . G A 293 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.24;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:36:326,36,0 chrV 225485 . T A 1025 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=23.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1058,126,0 chrV 225778 . A G 66.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.589;QD=8.31;ReadPosRankSum=1.589;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,6:8:12:99,12,0 chrV 225841 . A G 924 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:40:99:957,111,0 chrV 226347 . G A 2005 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.28;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2038,225,0 chrV 226401 . T C 2404 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.66;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2437,285,0 chrV 226500 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3468,381,0 chrV 226861 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.60;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2042,219,0 chrV 227104 . A G 1525 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=22.43;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1558,174,0 chrV 227105 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=22.90;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1590,174,0 chrV 227242 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.41;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1826,210,0 chrV 227272 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.35;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1971,213,0 chrV 227327 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.59;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2300,264,0 chrV 227341 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=3.027;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-1.392;QD=21.56;ReadPosRankSum=2.320;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2491,282,0 chrV 227383 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.94;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2186,237,0 chrV 227401 . A G 2207 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.36;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2240,258,0 chrV 227534 . T C 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.160;QD=20.86;ReadPosRankSum=1.631;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2202,255,0 chrV 227640 . T C 2671 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.03;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2704,309,0 chrV 227836 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.53;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2872,330,0 chrV 228004 . G T 2623 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.9170;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.43;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2656,291,0 chrV 228112 . G A 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.518;QD=19.57;ReadPosRankSum=1.288;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2323,261,0 chrV 228115 . A C 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.698;DP=116;Dels=0.00;FS=8.098;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.748;QD=20.14;ReadPosRankSum=3.711;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:5,111:116:99:2369,267,0 chrV 228392 . T A 1234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.800;QD=23.73;ReadPosRankSum=1.666;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1267,138,0 chrV 228711 . A G 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.622;QD=19.08;ReadPosRankSum=1.710;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3067,360,0 chrV 228738 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.76;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2957,324,0 chrV 228774 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.42;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3158,360,0 chrV 228943 . A T 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=4.518;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.231;QD=22.39;ReadPosRankSum=1.709;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3358,378,0 chrV 229119 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=182;Dels=0.00;FS=3.026;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.425;QD=22.29;ReadPosRankSum=2.409;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4056,456,0 chrV 229265 . A G 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=3.717;HaplotypeScore=9.2057;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.583;QD=21.16;ReadPosRankSum=1.714;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4106,483,0 chrV 229493 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=19.9984;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.03;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4127,456,0 chrV 229569 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.668;QD=21.82;ReadPosRankSum=1.668;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3578,414,0 chrV 229595 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.743;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.183;QD=19.49;ReadPosRankSum=1.711;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3191,366,0 chrV 229603 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.27;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3360,363,0 chrV 229778 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.4388;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.84;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3314,369,0 chrV 230208 . C T 7851.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=19.0553;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.16;SB=-3.743e+03 GT:AD:DP:GQ:PL 1/1:0,325:325:99:7851,856,0 chrV 230344 . C T 5603.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.68;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:5603,618,0 chrV 230406 . T C 4491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=257;Dels=0.00;FS=15.155;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.402;QD=17.47;ReadPosRankSum=2.949;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:3,254:257:99:4491,530,0 chrV 230421 . C T 4925.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.24;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:4925,546,0 chrV 230583 . A G 2595 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=17.77;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2628,306,0 chrV 230884 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.58;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3443,378,0 chrV 230909 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=20.79;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3347,363,0 chrV 230914 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.55;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3308,357,0 chrV 230923 . G T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.31;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3283,363,0 chrV 231027 . A T 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=131;Dels=0.00;FS=9.234;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-2.439;QD=22.11;ReadPosRankSum=2.885;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2930,330,0 chrV 231096 . C G 3967.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.8337;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.92;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3967,465,0 chrV 231382 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.84;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3709,411,0 chrV 231408 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.0461;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.75;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3382,375,0 chrV 231721 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3015,336,0 chrV 231889 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2445,282,0 chrV 232000 . A G 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.172;QD=20.96;ReadPosRankSum=1.697;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2129,246,0 chrV 232187 . G A 1182 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.49;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1215,135,0 chrV 232238 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.52;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1429,156,0 chrV 232348 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=21.42;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1597,183,0 chrV 232364 . G C 1486 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.05;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1519,174,0 chrV 232392 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.32;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1517,162,0 chrV 232399 . C G 1212 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=14.78;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1245,147,0 chrV 232580 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=2.941;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.161;QD=22.40;ReadPosRankSum=2.412;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2967,348,0 chrV 232802 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.0811;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.70;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3654,420,0 chrV 232869 . A T 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=4.250;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.407;QD=23.75;ReadPosRankSum=1.709;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3538,387,0 chrV 232874 . T C 3013 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.78;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3046,354,0 chrV 233255 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=3.210;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.139;QD=21.82;ReadPosRankSum=1.701;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2477,288,0 chrV 233356 . A G 2466 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.42;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2499,285,0 chrV 234239 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8232;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.65;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3303,360,0 chrV 234299 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.237;QD=20.16;ReadPosRankSum=1.677;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2573,297,0 chrV 234319 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.78;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2426,270,0 chrV 234520 . C G 2848 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=14.2963;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.41;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2881,330,0 chrV 234579 . A G 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=156;Dels=0.00;FS=9.263;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.984;QD=20.16;ReadPosRankSum=2.417;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:3178,378,0 chrV 234626 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=2.987;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.337;QD=22.22;ReadPosRankSum=2.377;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3778,432,0 chrV 234654 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.79;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3551,396,0 chrV 234744 . A T 2198 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-1.561;QD=18.47;ReadPosRankSum=2.408;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2231,264,0 chrV 234749 . G A 2250 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.64;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2283,258,0 chrV 234751 . A C 2391 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.09;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2424,276,0 chrV 234927 . T C 2103 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=20.03;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2136,240,0 chrV 234931 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=21.07;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2224,243,0 chrV 235495 . T C 2403 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2436,276,0 chrV 235642 . T C 1115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.607;QD=19.91;ReadPosRankSum=2.360;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:2,53:56:99:1148,135,0 chrV 235773 . A G 2469 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.21;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2502,282,0 chrV 235812 . A G 2689 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.59;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2722,306,0 chrV 236202 . A G 8101.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=378;Dels=0.00;FS=2.965;HaplotypeScore=21.2379;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.501;QD=21.43;ReadPosRankSum=2.436;SB=-4.194e+03 GT:AD:DP:GQ:PL 1/1:2,374:378:99:8101,933,0 chrV 236672 . G A 5487.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=15.2336;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.05;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5487,603,0 chrV 237481 . G C 1631 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.65;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1664,198,0 chrV 238122 . C A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3468,381,0 chrV 238396 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.7601;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.06;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2006,222,0 chrV 238975 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.35;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2402,267,0 chrV 239168 . A G 2188 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.56;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2221,258,0 chrV 239206 . T C 2344 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.21;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2377,273,0 chrV 239238 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.16;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2372,261,0 chrV 239782 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.02;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2997,330,0 chrV 239810 . G C 2125 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.86;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2158,246,0 chrV 239816 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=19.99;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2232,252,0 chrV 239875 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.59;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2602,303,0 chrV 239949 . G A 2270 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.16;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2303,258,0 chrV 240008 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.94;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2022,225,0 chrV 240009 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.93;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1946,222,0 chrV 240035 . T C 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=0.341;QD=17.93;ReadPosRankSum=1.643;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2131,240,0 chrV 240086 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=18.64;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2270,252,0 chrV 240087 . C A 2236 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.48;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2269,255,0 chrV 240100 . T G 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.341;QD=17.84;ReadPosRankSum=1.680;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2423,279,0 chrV 240196 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=138;Dels=0.00;FS=6.647;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.117;QD=22.09;ReadPosRankSum=2.378;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3081,345,0 chrV 240293 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.86;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4628,504,0 chrV 240545 . A G 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=225;Dels=0.00;FS=3.019;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.147;QD=22.31;ReadPosRankSum=2.428;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5020,570,0 chrV 240731 . G A 5505.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.7413;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.84;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5505,612,0 chrV 240764 . G A 5488.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=25.3319;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.13;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5488,621,0 chrV 240961 . T G 5610.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=19.7741;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.63;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5610,636,0 chrV 241047 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;DP=239;Dels=0.00;FS=2.907;HaplotypeScore=20.4976;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=-1.170;QD=17.89;ReadPosRankSum=1.857;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,235:239:99:4275,468,0 chrV 241059 . G A 4280.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.77;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4280,486,0 chrV 241084 . G A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.9705;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.89;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3892,426,0 chrV 241109 . G A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.22;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3663,408,0 chrV 241256 . A G 2415 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.37;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2448,291,0 chrV 241325 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8590;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.01;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3001,330,0 chrV 241371 . A G 3176 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0388;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.06;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3209,363,0 chrV 241522 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.01;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1402,159,0 chrV 241759 . C T 510 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.40;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:25:60:543,60,0 chrV 241777 . T C 472 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.88;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:57:505,57,0 chrV 241799 . C A 475 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.27;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:57:508,57,0 chrV 241800 . C G 461 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.07;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:57:494,57,0 chrV 241849 . G A 293 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=13.32;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:36:326,36,0 chrV 241921 . C A 572 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=15.46;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,34:37:66:605,66,0 chrV 241980 . G A 2777 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2810,306,0 chrV 242159 . T C 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.940;QD=19.50;ReadPosRankSum=1.714;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3666,426,0 chrV 242167 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.41;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4038,444,0 chrV 242204 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=17.84;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:3890,456,0 chrV 242241 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6899;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.79;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3555,402,0 chrV 242361 . C G 5516.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=9.8111;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.98;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5516,636,0 chrV 242385 . A T 5229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=2.4888;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.676;QD=21.26;ReadPosRankSum=0.084;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:5229,558,0 chrV 242413 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=-0.231;QD=18.00;ReadPosRankSum=1.700;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:3924,441,0 chrV 242456 . A G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=166;Dels=0.00;FS=6.817;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;MQRankSum=-2.109;QD=13.86;ReadPosRankSum=2.390;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:2334,267,0 chrV 242461 . T A 2273 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=14.12;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2306,249,0 chrV 242472 . T C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;MQRankSum=-1.187;QD=11.82;ReadPosRankSum=1.710;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:1912,228,0 chrV 242481 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=14.27;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:2516,276,0 chrV 242693 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=158.7467;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=0.23;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:9:73,9,0 chrV 242801 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=3.429;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.493;QD=21.26;ReadPosRankSum=1.712;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3700,420,0 chrV 242834 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.0829;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.06;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3795,426,0 chrV 242907 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=187;Dels=0.00;FS=7.191;HaplotypeScore=10.6292;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.926;QD=19.35;ReadPosRankSum=2.318;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3619,399,0 chrV 242916 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=0.100;QD=19.24;ReadPosRankSum=1.672;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3348,372,0 chrV 242940 . A T 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=179;Dels=0.00;FS=3.836;HaplotypeScore=6.2083;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.552;QD=19.32;ReadPosRankSum=1.693;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3458,378,0 chrV 243090 . C G 4099.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.16;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4099,480,0 chrV 243135 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.92;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4340,501,0 chrV 243157 . A C 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.0355;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.054;QD=22.35;ReadPosRankSum=1.677;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4224,486,0 chrV 243299 . T C 4415.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.12;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4415,501,0 chrV 243371 . T C 3992.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.9317;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.81;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3992,468,0 chrV 243802 . T C 387 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DP=30;Dels=0.00;FS=5.229;HaplotypeScore=4.5472;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=2.399;QD=12.90;ReadPosRankSum=-0.453;SB=3.00 GT:AD:DP:GQ:PL 1/1:9,21:30:48:420,48,0 chrV 243867 . C A 2002 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.02;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2035,225,0 chrV 243892 . A T 1943 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.13;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1976,219,0 chrV 244317 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=183;Dels=0.00;FS=2.628;HaplotypeScore=19.3746;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.101;QD=17.92;ReadPosRankSum=2.369;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3279,372,0 chrV 244404 . T A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.5803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4082,462,0 chrV 244650 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.33;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2998,330,0 chrV 244849 . G A 3023 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.91;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3056,333,0 chrV 244851 . G A 2967 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.35;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3000,342,0 chrV 244855 . T C 3013 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=147;Dels=0.00;FS=3.038;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.410;QD=20.50;ReadPosRankSum=2.366;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3046,351,0 chrV 244908 . T C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=4.137;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.148;QD=19.00;ReadPosRankSum=1.707;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2693,309,0 chrV 245067 . C T 2561 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.82;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2594,288,0 chrV 245083 . A G 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.711;DP=122;Dels=0.00;FS=9.582;HaplotypeScore=8.7435;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.793;QD=19.59;ReadPosRankSum=2.662;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2423,285,0 chrV 245401 . G A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.70;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3677,402,0 chrV 245499 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.5943;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.93;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3509,393,0 chrV 245855 . G C 4780.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.32;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4780,552,0 chrV 246116 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=213;Dels=0.00;FS=5.401;HaplotypeScore=18.5170;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.919;QD=21.86;ReadPosRankSum=2.910;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4656,531,0 chrV 246194 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.104;QD=20.02;ReadPosRankSum=2.715;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:3884,444,0 chrV 246195 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.679;QD=19.87;ReadPosRankSum=1.429;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3895,441,0 chrV 246498 . A C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4649;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.59;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3276,372,0 chrV 246542 . C G 2888 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.55;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2921,330,0 chrV 246588 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.19;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2216,261,0 chrV 246604 . T C 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=4.244;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.434;QD=20.90;ReadPosRankSum=1.695;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1977,225,0 chrV 246716 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.90;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1517,168,0 chrV 246845 . G C 1842 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=21.67;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1875,216,0 chrV 246906 . G A 1883 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.64;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1916,213,0 chrV 246907 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=18.66;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1936,213,0 chrV 247147 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.0363;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.01;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4138,465,0 chrV 247282 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=4.919;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.337;QD=17.17;ReadPosRankSum=1.709;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2608,297,0 chrV 247327 . A T 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=155;Dels=0.00;FS=5.148;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.247;QD=21.45;ReadPosRankSum=3.402;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3325,366,0 chrV 247750 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3979,465,0 chrV 247981 . A G 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=213;Dels=0.00;FS=3.222;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.072;QD=22.39;ReadPosRankSum=1.683;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:1,209:213:99:4769,555,0 chrV 248107 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.3633;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.69;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:4821,552,0 chrV 248286 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.770;DP=197;Dels=0.00;FS=7.026;HaplotypeScore=13.5423;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.107;QD=23.09;ReadPosRankSum=2.388;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:5,192:197:99:4549,525,0 chrV 248340 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.88;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3571,402,0 chrV 248414 . A G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.492;DP=166;Dels=0.01;FS=11.492;HaplotypeScore=115.2134;MLEAC=1;MLEAF=0.500;MQ=34.56;MQ0=0;MQRankSum=4.569;QD=0.12;ReadPosRankSum=-1.660;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,8:165:50:50,0,107 chrV 248444 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=5.20;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:937,108,0 chrV 248460 . A G 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.244;DP=186;Dels=0.00;FS=7.972;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;MQRankSum=1.451;QD=6.77;ReadPosRankSum=3.413;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:4,182:186:99:1293,153,0 chrV 248522 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.02;FS=0.000;HaplotypeScore=13.8090;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.40;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3148,354,0 chrV 248659 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=2.822;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;MQRankSum=1.247;QD=23.47;ReadPosRankSum=2.414;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3249,369,0 chrV 248691 . T G 3355.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.79;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3355,393,0 chrV 248756 . A G 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.144;QD=22.34;ReadPosRankSum=1.703;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2736,315,0 chrV 248822 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=110;Dels=0.00;FS=3.050;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-1.286;QD=22.53;ReadPosRankSum=2.405;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2511,282,0 chrV 248843 . A G 2145 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.45;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2178,252,0 chrV 248974 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=102;Dels=0.00;FS=13.811;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=2.198;QD=21.00;ReadPosRankSum=2.931;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2175,249,0 chrV 249123 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.22;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2077,225,0 chrV 249157 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.65;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2003,222,0 chrV 249177 . T C 2122 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.60;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2155,246,0 chrV 249234 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=18.71;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2091,240,0 chrV 249256 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=21.27;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2373,267,0 chrV 249335 . A G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=3.394;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-1.122;QD=18.79;ReadPosRankSum=1.708;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2739,318,0 chrV 249347 . T C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.579;QD=19.38;ReadPosRankSum=1.707;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2669,318,0 chrV 249496 . A C 2617 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9410;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.63;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2650,306,0 chrV 249511 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.49;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2461,294,0 chrV 249613 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=8.2563;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=21.94;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2775,318,0 chrV 249703 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=24.58;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2245,249,0 chrV 249705 . C A 2144 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=24.36;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2177,246,0 chrV 249834 . T A 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.499;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;MQRankSum=1.511;QD=23.43;ReadPosRankSum=1.695;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2235,249,0 chrV 249884 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=20.70;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1337,147,0 chrV 249887 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=19.74;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1158,135,0 chrV 249901 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=21.46;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:870,96,0 chrV 249912 . T A 538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=0.706;QD=19.93;ReadPosRankSum=1.091;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:63:571,63,0 chrV 249917 . A T 487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=-1.734;QD=20.29;ReadPosRankSum=1.589;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:57:520,57,0 chrV 250205 . C A 47.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=1;QD=11.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:80,9,0 chrV 250386 . T C 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=91;Dels=0.00;FS=3.632;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-0.577;QD=22.03;ReadPosRankSum=1.694;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2038,237,0 chrV 250508 . A T 1419 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=17.10;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1452,162,0 chrV 250547 . C A 2207 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.06;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2240,255,0 chrV 250573 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=13.6562;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.05;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2767,306,0 chrV 250605 . T C 2799 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.57;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2832,324,0 chrV 250692 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.268;QD=21.46;ReadPosRankSum=1.670;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2436,279,0 chrV 251006 . C G 2977 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.90;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3010,345,0 chrV 251036 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.36;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2761,303,0 chrV 251267 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.27;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2096,231,0 chrV 251279 . A G 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.404;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.630;QD=20.60;ReadPosRankSum=1.630;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2134,246,0 chrV 251309 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.21;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2094,234,0 chrV 251322 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.82;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2035,228,0 chrV 251361 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.20;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2174,249,0 chrV 251581 . T C 791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=64;Dels=0.00;FS=3.522;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.402;QD=12.36;ReadPosRankSum=1.622;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:96:824,96,0 chrV 251721 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.13;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2357,258,0 chrV 251787 . C G 2266 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.58;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2299,270,0 chrV 251925 . T A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7789;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.68;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3505,396,0 chrV 251970 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.732;QD=23.64;ReadPosRankSum=1.710;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3759,432,0 chrV 252072 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.88;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4011,438,0 chrV 252103 . C A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.55;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3540,402,0 chrV 252588 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.68;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2917,324,0 chrV 252642 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.88;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3558,387,0 chrV 252657 . A G 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.176;QD=22.06;ReadPosRankSum=1.707;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3099,357,0 chrV 253071 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8664;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.10;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3760,417,0 chrV 253191 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.770;QD=22.65;ReadPosRankSum=1.694;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4077,465,0 chrV 253377 . G A 5000.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.0820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5000,555,0 chrV 253643 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.00;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3115,333,0 chrV 253920 . T G 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=93.0051;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.732;QD=0.40;ReadPosRankSum=1.661;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:9:71,9,0 chrV 253929 . T C 2098 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.19;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2131,246,0 chrV 254021 . T G 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.949;QD=20.57;ReadPosRankSum=1.612;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2399,285,0 chrV 254085 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=151;Dels=0.00;FS=3.040;HaplotypeScore=10.2045;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.883;QD=21.19;ReadPosRankSum=2.417;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3233,363,0 chrV 254204 . T A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.41;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3301,363,0 chrV 254274 . T A 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.811;QD=20.16;ReadPosRankSum=1.688;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3219,369,0 chrV 254391 . G A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=16.8609;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.64;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3622,399,0 chrV 254589 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.22;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3900,426,0 chrV 254651 . G T 3106 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.71;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3139,348,0 chrV 254667 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.73;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2711,306,0 chrV 254691 . G T 2301 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=15.24;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2334,267,0 chrV 254694 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.29;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2403,264,0 chrV 254754 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.10;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2513,285,0 chrV 254838 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.10;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3326,378,0 chrV 255120 . A C 3096 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4273;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.28;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3129,354,0 chrV 255344 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.5934;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.14;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3425,384,0 chrV 255414 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3030,345,0 chrV 255503 . A G 2219 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.2042;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.41;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2252,258,0 chrV 255702 . T C 2745 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.46;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2778,318,0 chrV 256032 . A G 2837 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.12;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2870,324,0 chrV 256048 . G C 2524 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4068;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.42;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2557,288,0 chrV 256159 . T C 1502 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.77;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1535,174,0 chrV 256810 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=182;Dels=0.00;FS=10.002;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.895;QD=22.31;ReadPosRankSum=2.962;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4061,482,0 chrV 258361 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8710;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.09;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2617,300,0 chrV 258489 . C T 2043 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.27;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2076,231,0 chrV 258531 . G T 2031 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.94;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2064,228,0 chrV 258552 . A G 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.052;QD=20.01;ReadPosRankSum=1.603;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2174,252,0 chrV 258666 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.83;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2809,318,0 chrV 259303 . A G 5383.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.0215;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.51;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:5383,612,0 chrV 259547 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.10;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3440,408,0 chrV 259762 . T A 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=91;Dels=0.04;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.976;QD=21.69;ReadPosRankSum=1.573;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2007,219,0 chrV 259785 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=22.71;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2122,243,0 chrV 260054 . A G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=0.328;QD=17.52;ReadPosRankSum=1.709;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2644,303,0 chrV 260078 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=4.006;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.459;QD=18.82;ReadPosRankSum=1.711;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3176,369,0 chrV 260106 . G C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.1313;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=18.30;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3514,405,0 chrV 260120 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=17.60;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3590,402,0 chrV 260126 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.01;FS=0.000;HaplotypeScore=6.9346;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=16.80;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:3729,420,0 chrV 260269 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.5992;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.39;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3092,348,0 chrV 260327 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.6807;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=1.710;QD=21.81;ReadPosRankSum=1.710;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3359,381,0 chrV 260511 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.71;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2280,252,0 chrV 260675 . T C 1807 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1840,213,0 chrV 260734 . T C 1660 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1693,195,0 chrV 260905 . C T 2764 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.46;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2797,312,0 chrV 261062 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7643;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.16;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2936,324,0 chrV 261193 . A T 2381 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.34;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2414,264,0 chrV 261299 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.75;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1712,192,0 chrV 261345 . A C 1174 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=17.79;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1207,138,0 chrV 261462 . T A 348 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9952;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=11.23;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:42:381,42,0 chrV 261787 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8950;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.28;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2842,315,0 chrV 261965 . C T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.45;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4499,510,0 chrV 262023 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=4.260;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=0.680;QD=20.12;ReadPosRankSum=1.711;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3380,396,0 chrV 262033 . T A 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=165;Dels=0.00;FS=2.783;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=-1.116;QD=20.19;ReadPosRankSum=2.420;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3332,375,0 chrV 262042 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2015;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=17.91;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3095,342,0 chrV 262212 . A G 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=223;Dels=0.00;FS=3.030;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.428;QD=22.00;ReadPosRankSum=2.427;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:2,219:223:99:4906,552,0 chrV 262462 . A T 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.518;DP=150;Dels=0.00;FS=4.766;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.586;QD=19.43;ReadPosRankSum=3.790;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:5,145:150:99:2948,336,0 chrV 262797 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3468,399,0 chrV 262877 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.177;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.732;QD=20.29;ReadPosRankSum=1.680;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2731,321,0 chrV 263386 . C A 1969 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.37;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2002,222,0 chrV 263549 . T C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=9.7104;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.054;QD=22.50;ReadPosRankSum=1.657;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2148,240,0 chrV 263633 . A T 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.061;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.8125;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=2.398;QD=19.15;ReadPosRankSum=2.009;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1852,201,0 chrV 263992 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.95;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3085,339,0 chrV 264105 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.81;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4060,462,0 chrV 264464 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.20;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2760,306,0 chrV 264478 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.31;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2798,315,0 chrV 264522 . T A 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.01;FS=8.648;HaplotypeScore=13.9259;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.523;QD=19.97;ReadPosRankSum=2.400;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3008,333,0 chrV 264668 . G A 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.6752;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.458;QD=23.73;ReadPosRankSum=1.389;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2430,264,0 chrV 264738 . G T 1974 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9606;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.93;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2007,219,0 chrV 265533 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3281,381,0 chrV 265623 . C T 4386.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.21;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4386,474,0 chrV 265681 . G T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8653;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.85;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4044,450,0 chrV 265809 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.06;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2614,285,0 chrV 265867 . A C 2818 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.73;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2851,327,0 chrV 265876 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.61;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2937,327,0 chrV 265937 . T C 1037 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.60;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1070,123,0 chrV 265995 . T C 910 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:943,111,0 chrV 266217 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.35;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1421,153,0 chrV 266266 . C T 986 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=4.8774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.61;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1019,114,0 chrV 266383 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.97;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2403,261,0 chrV 266480 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7537;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=0.839;QD=24.29;ReadPosRankSum=-0.946;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3983,453,0 chrV 266530 . T C 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=160;Dels=0.00;FS=2.394;HaplotypeScore=8.8010;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-1.314;QD=19.27;ReadPosRankSum=2.139;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:4,155:160:99:3116,363,0 chrV 266551 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.25;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3484,396,0 chrV 266610 . T C 4649.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.13;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4649,548,0 chrV 266704 . G A 4424.01 SnpCluster AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=2;QD=20.77;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4424,489,0 chrV 266707 . A G 4286.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=2;MQRankSum=-0.287;QD=20.03;ReadPosRankSum=1.683;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4286,492,0 chrV 266713 . A G 3974.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.980;DP=224;Dels=0.00;FS=2.065;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=2;MQRankSum=-0.340;QD=17.74;ReadPosRankSum=1.972;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:6,214:224:99:3974,462,0 chrV 266722 . C A 4510.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=2;QD=19.78;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,223:228:99:4510,492,0 chrV 266814 . A G 5663.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.04;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5663,645,0 chrV 266836 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=3;QD=20.55;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4439,504,0 chrV 266992 . A G 4908.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.8707;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.51;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4908,567,0 chrV 267091 . A G 2925 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=163;Dels=0.00;FS=10.386;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-0.562;QD=17.94;ReadPosRankSum=2.957;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:2958,336,0 chrV 267094 . A G 2815 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.536;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=-0.351;QD=17.70;ReadPosRankSum=1.710;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2848,330,0 chrV 267100 . G A 2881 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=17.25;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2914,330,0 chrV 267137 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.07;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3338,363,0 chrV 267268 . C T 4546.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.5028;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.68;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4546,513,0 chrV 267318 . T C 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=219;Dels=0.00;FS=2.905;HaplotypeScore=10.3533;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-1.510;QD=21.97;ReadPosRankSum=2.404;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:2,215:219:99:4812,567,0 chrV 267673 . G A 5383.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5383,591,0 chrV 268231 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1193,138,0 chrV 268424 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.59;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1824,201,0 chrV 268597 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.11;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2975,315,0 chrV 268713 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3092,342,0 chrV 268979 . T C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=3.478;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=0.106;QD=20.03;ReadPosRankSum=1.661;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1996,228,0 chrV 269034 . A C 1802 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=17.67;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1835,207,0 chrV 269057 . A G 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=108;Dels=0.00;FS=2.582;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;MQRankSum=-1.944;QD=15.14;ReadPosRankSum=2.879;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:1668,189,0 chrV 269064 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=13.97;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1598,174,0 chrV 269076 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=12.24;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1453,168,0 chrV 269109 . T A 1591 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=96.6508;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.15;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1624,177,0 chrV 269122 . A T 1632 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=14.57;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1665,186,0 chrV 269123 . G C 1581 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=14.12;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1614,186,0 chrV 269126 . G T 1709 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=14.73;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1742,189,0 chrV 269141 . A G 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.826;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;MQRankSum=1.271;QD=13.49;ReadPosRankSum=2.408;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:1638,189,0 chrV 269226 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.11;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1803,198,0 chrV 269239 . T C 1891 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=20.33;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1924,219,0 chrV 269407 . A G 2441 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.79;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2474,291,0 chrV 269982 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.70;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3437,390,0 chrV 270049 . A T 3144 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.29;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3177,351,0 chrV 270072 . T A 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.845;DP=123;Dels=0.00;FS=3.752;HaplotypeScore=5.7366;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.360;QD=21.63;ReadPosRankSum=0.959;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2694,287,0 chrV 270213 . A T 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=190;Dels=0.00;FS=5.945;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-2.582;QD=22.51;ReadPosRankSum=2.963;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:4277,474,0 chrV 270466 . C A 2857 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.70;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2890,321,0 chrV 270473 . T C 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=4.061;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.423;QD=19.13;ReadPosRankSum=1.655;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2615,300,0 chrV 271135 . T A 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=217;Dels=0.00;FS=6.753;HaplotypeScore=8.1969;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.232;QD=22.00;ReadPosRankSum=2.314;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4775,519,0 chrV 271177 . C T 4766.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.8386;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.37;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4766,531,0 chrV 271202 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=6.505;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.690;QD=20.19;ReadPosRankSum=2.412;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:3938,447,0 chrV 271215 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.47;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4143,462,0 chrV 271319 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=10.792;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=-0.225;QD=21.36;ReadPosRankSum=1.700;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2361,270,0 chrV 271332 . A G 2020 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;MQRankSum=-1.798;QD=20.20;ReadPosRankSum=2.930;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2053,237,0 chrV 271333 . T A 2108 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=21.51;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2141,240,0 chrV 271334 . T C 1968 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;QD=20.29;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2001,240,0 chrV 271367 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=17.90;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1930,213,0 chrV 271374 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=18.36;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1869,210,0 chrV 271409 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.83;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1976,216,0 chrV 271540 . T C 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.805;QD=22.17;ReadPosRankSum=1.635;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1607,186,0 chrV 271694 . G A 5254.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.98;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,259:263:99:5254,573,0 chrV 271703 . A G 5200.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=14.2147;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.31;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:5200,597,0 chrV 271934 . T C 7474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=345;Dels=0.00;FS=11.093;HaplotypeScore=20.1157;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.712;QD=21.66;ReadPosRankSum=2.385;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:2,341:345:99:7474,846,0 chrV 272025 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.38;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3367,384,0 chrV 272125 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.142;DP=144;Dels=0.00;FS=5.177;HaplotypeScore=9.2963;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.966;QD=21.36;ReadPosRankSum=3.398;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3109,360,0 chrV 272169 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.22;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3288,378,0 chrV 272256 . T A 2246 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=17.83;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2279,255,0 chrV 272259 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=2.731;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.010;QD=16.75;ReadPosRankSum=2.392;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2210,252,0 chrV 272403 . G A 3146 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.83;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3179,348,0 chrV 272709 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.79;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3828,429,0 chrV 272797 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.40;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4077,456,0 chrV 273467 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.04;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4078,447,0 chrV 273596 . G C 4434.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4434,498,0 chrV 273721 . T A 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.439;QD=22.67;ReadPosRankSum=1.715;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4557,504,0 chrV 274136 . A T 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=0.141;QD=19.26;ReadPosRankSum=1.706;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2633,291,0 chrV 274152 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=95.6952;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=-0.266;QD=16.33;ReadPosRankSum=1.599;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2156,246,0 chrV 274193 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.85;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1907,213,0 chrV 274455 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.59;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3603,405,0 chrV 274459 . T A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.36;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3664,402,0 chrV 274753 . G A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.41;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4238,483,0 chrV 275157 . C T 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.5688;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.010;QD=21.47;ReadPosRankSum=1.404;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4551,501,0 chrV 275403 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.9557;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.85;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3586,423,0 chrV 275917 . A G 5759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.807;DP=278;Dels=0.00;FS=46.941;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=3.468;QD=20.72;ReadPosRankSum=-0.694;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:10,267:278:99:5759,540,0 chrV 275970 . T A 6059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=275;Dels=0.00;FS=12.007;HaplotypeScore=27.1394;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=3.733;QD=22.03;ReadPosRankSum=2.168;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:8,267:275:99:6059,592,0 chrV 276167 . A G 5433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.974;DP=251;Dels=0.00;FS=7.301;HaplotypeScore=17.5426;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.609;QD=21.65;ReadPosRankSum=4.169;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:6,244:251:99:5433,624,0 chrV 276209 . C A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=18.6953;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.60;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4672,507,0 chrV 276585 . T C 2421 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.6507;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.81;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2454,282,0 chrV 276619 . G T 2728 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2761,318,0 chrV 276757 . T C 3053 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.95;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3086,360,0 chrV 276799 . A C 2987 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.32;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3020,351,0 chrV 276998 . C T 4784.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.45;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4784,522,0 chrV 277003 . C T 4743.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.08;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4743,519,0 chrV 277227 . G A 5962.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.66;SB=-3.225e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5962,651,0 chrV 277720 . A G 3072 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=194;Dels=0.00;FS=2.976;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=13;MQRankSum=-0.034;QD=15.84;ReadPosRankSum=2.355;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:7,186:194:99:3105,354,0 chrV 277947 . A G 800 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=231;Dels=0.00;FS=4.951;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=16.84;MQ0=9;MQRankSum=-1.732;QD=3.46;ReadPosRankSum=1.685;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,230:231:96:833,96,0 chrV 277954 . G A 268 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.52;MQ0=9;QD=1.26;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,213:213:33:301,33,0 chrV 277956 . A G 155.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.26;MQ0=9;QD=0.76;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:1,202:203:21:188,21,0 chrV 277969 . T C 620 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=218;Dels=0.00;FS=2.564;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=8;MQRankSum=-2.766;QD=2.84;ReadPosRankSum=2.938;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:3,215:218:75:653,75,0 chrV 277972 . C T 787 filter AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=8;QD=3.63;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,217:217:90:820,90,0 chrV 278098 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.7999;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=12.32;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,185:186:99:2325,264,0 chrV 278456 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.25;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3716,417,0 chrV 278802 . C T 6418.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=31.6922;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.70;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,301:310:99:6418,714,0 chrV 279481 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=147;Dels=0.00;FS=3.037;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.271;QD=22.35;ReadPosRankSum=2.399;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3285,375,0 chrV 279726 . A T 1907 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.51;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1940,216,0 chrV 279907 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.93;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2921,327,0 chrV 280038 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.44;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4211,486,0 chrV 280050 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=3.506;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.679;QD=21.08;ReadPosRankSum=1.698;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4342,501,0 chrV 280218 . C T 5080.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.69;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5080,561,0 chrV 280223 . G A 5055.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=4.4986;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.38;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:0,271:275:99:5055,558,0 chrV 280729 . A C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.375;QD=22.97;ReadPosRankSum=1.709;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3400,402,0 chrV 280780 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=151;Dels=0.00;FS=8.973;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.121;QD=23.13;ReadPosRankSum=2.416;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:3492,399,0 chrV 280801 . T A 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.311;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.054;QD=23.87;ReadPosRankSum=1.684;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3437,378,0 chrV 280826 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.99;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3137,351,0 chrV 280959 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.62;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2721,327,0 chrV 281064 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.84;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3756,438,0 chrV 281114 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.64;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3877,423,0 chrV 281180 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.428;QD=23.41;ReadPosRankSum=1.692;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4003,447,0 chrV 281289 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=152;Dels=0.00;FS=15.549;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.800;QD=17.91;ReadPosRankSum=3.033;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:2755,324,0 chrV 281339 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.66;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3942,429,0 chrV 281429 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=147;Dels=0.00;FS=3.383;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.427;QD=22.84;ReadPosRankSum=1.708;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3358,387,0 chrV 281587 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.35;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3309,381,0 chrV 281645 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.43;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3061,336,0 chrV 281684 . T C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=132;Dels=0.00;FS=5.790;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.515;QD=20.27;ReadPosRankSum=2.931;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2709,309,0 chrV 281895 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.93;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3692,408,0 chrV 281991 . T C 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.210;QD=21.49;ReadPosRankSum=1.590;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3213,369,0 chrV 282225 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3787,444,0 chrV 282377 . C T 2556 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.81;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2589,288,0 chrV 282635 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.27;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3363,381,0 chrV 282737 . A C 6280.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=17.2438;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.51;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,273:279:99:6280,729,0 chrV 282853 . C T 5232.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.2633;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.55;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5232,570,0 chrV 282882 . A G 5237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=259;Dels=0.00;FS=6.140;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.263;QD=20.22;ReadPosRankSum=2.392;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:2,255:259:99:5237,603,0 chrV 282941 . G A 6356.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=23.8383;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.37;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:6356,729,0 chrV 283027 . G A 5068.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.9748;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.83;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5068,579,0 chrV 283294 . T C 2956 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2989,336,0 chrV 283352 . T C 3175 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.20;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3208,375,0 chrV 283386 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.79;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2713,306,0 chrV 283424 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.8734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.343;QD=19.98;ReadPosRankSum=1.666;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:6,115:122:99:2470,265,0 chrV 283533 . T G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.342;QD=22.85;ReadPosRankSum=1.608;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3816,432,0 chrV 283635 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3956,435,0 chrV 284163 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.20;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2641,285,0 chrV 284190 . A T 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.758;QD=20.68;ReadPosRankSum=1.696;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2018,219,0 chrV 284262 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.31;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2175,240,0 chrV 284613 . T C 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.019;QD=23.58;ReadPosRankSum=2.896;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2533,291,0 chrV 284680 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.53;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3021,333,0 chrV 285018 . T C 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=5.651;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.020;QD=21.76;ReadPosRankSum=1.597;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3917,444,0 chrV 285114 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=30.4734;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=20.33;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3761,414,0 chrV 285738 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=223;Dels=0.00;FS=9.122;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.393;QD=20.87;ReadPosRankSum=2.427;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4653,534,0 chrV 286038 . C T 5271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.8147;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.108;QD=23.32;ReadPosRankSum=-1.175;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5271,594,0 chrV 286642 . G A 4777.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.5520;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.65;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4777,525,0 chrV 286762 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.24;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3653,405,0 chrV 286888 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.30;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2977,324,0 chrV 286966 . G T 2987 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.18;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3020,336,0 chrV 286967 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.03;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2978,330,0 chrV 287299 . G T 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.409;QD=21.11;ReadPosRankSum=1.057;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2545,282,0 chrV 287375 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.75;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2854,327,0 chrV 287597 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.631;QD=21.52;ReadPosRankSum=1.698;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2250,255,0 chrV 287599 . T G 2145 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.67;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2178,249,0 chrV 287659 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.91;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2245,252,0 chrV 287674 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.33;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2237,255,0 chrV 287710 . G T 2590 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.39;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2623,300,0 chrV 287796 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.35;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2368,267,0 chrV 287932 . T C 2248 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.94;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2281,264,0 chrV 288216 . T C 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.00;FS=3.144;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.207;QD=22.14;ReadPosRankSum=1.680;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2977,345,0 chrV 288301 . T C 2841 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.67;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2874,330,0 chrV 288331 . C G 2904 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.76;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2937,333,0 chrV 288341 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.68;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2907,321,0 chrV 288379 . C T 2484 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.54;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2517,279,0 chrV 288745 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.155;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.623;QD=22.62;ReadPosRankSum=1.664;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3484,396,0 chrV 288812 . C T 4538.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.92;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4538,498,0 chrV 288990 . G A 6609.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.03;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6609,712,0 chrV 289034 . G A 4860.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.25;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4860,537,0 chrV 289087 . C G 3519.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=2.9309;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.92;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3519,402,0 chrV 289088 . G T 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=187;Dels=0.00;FS=2.695;HaplotypeScore=4.8840;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-2.056;QD=19.62;ReadPosRankSum=2.108;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3668,408,0 chrV 289221 . A G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.8481;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=0.531;QD=19.97;ReadPosRankSum=1.709;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3048,348,0 chrV 289439 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.64;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3354,369,0 chrV 289477 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=175;Dels=0.00;FS=3.434;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.624;QD=22.71;ReadPosRankSum=1.692;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:3975,450,0 chrV 289609 . T A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.98;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3573,393,0 chrV 289658 . T G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=3.961;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=1.643;QD=19.09;ReadPosRankSum=1.614;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2267,261,0 chrV 289772 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=20.54;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3093,342,0 chrV 289880 . G T 902 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=5;QD=10.61;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:935,102,0 chrV 289889 . G A 646 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.63;MQ0=8;QD=7.69;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:72:679,72,0 chrV 289908 . A G 537 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.58;MQ0=6;MQRankSum=-0.702;QD=6.88;ReadPosRankSum=2.381;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:63:570,63,0 chrV 290057 . C T 3176 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=10;QD=20.76;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:4,146:153:99:3209,366,0 chrV 290192 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=22.01;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3412,372,0 chrV 290196 . T C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=2.755;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-0.580;QD=20.02;ReadPosRankSum=2.372;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3237,375,0 chrV 290223 . T A 2976 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=18.96;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3009,342,0 chrV 290420 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.8827;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.316;QD=23.56;ReadPosRankSum=0.841;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4170,456,0 chrV 290513 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=2.822;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.860;QD=20.11;ReadPosRankSum=2.421;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3438,399,0 chrV 290529 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.1321;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.55;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3922,423,0 chrV 290805 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.16;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3682,411,0 chrV 291268 . C A 6114.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.1488;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.25;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6114,687,0 chrV 291339 . A G 6184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=266;Dels=0.00;FS=3.740;HaplotypeScore=18.0048;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.222;QD=23.25;ReadPosRankSum=1.693;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:1,264:266:99:6184,699,0 chrV 291988 . A G 3109 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.53;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:3142,357,0 chrV 292073 . A G 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=125;Dels=0.00;FS=3.265;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.211;QD=19.73;ReadPosRankSum=1.676;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2499,285,0 chrV 292077 . G A 2423 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.36;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2456,273,0 chrV 292698 . A T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.9300;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.24;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4170,450,0 chrV 292770 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=147;Dels=0.00;FS=3.027;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.608;QD=22.82;ReadPosRankSum=2.332;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3355,378,0 chrV 293301 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4388,477,0 chrV 293965 . A C 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=145;Dels=0.00;FS=4.564;HaplotypeScore=13.7529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.400;QD=21.28;ReadPosRankSum=1.659;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3119,363,0 chrV 294081 . T C 4485.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.09;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4485,510,0 chrV 294112 . A G 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=198;Dels=0.00;FS=3.030;HaplotypeScore=15.0968;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.510;QD=20.64;ReadPosRankSum=2.424;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4087,468,0 chrV 294460 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3809,417,0 chrV 294714 . T G 2108 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0972;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.82;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2141,249,0 chrV 294941 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.85;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2275,249,0 chrV 296561 . A G 3114 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.3974;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.78;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3147,360,0 chrV 296717 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=3.242;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.507;QD=21.14;ReadPosRankSum=1.710;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3277,384,0 chrV 296971 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.7166;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3398,384,0 chrV 297515 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.75;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3459,375,0 chrV 297527 . G C 2554 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.92;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2587,300,0 chrV 297816 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.84;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2965,336,0 chrV 297869 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1682,189,0 chrV 298006 . T C 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=23.953;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.087;QD=18.62;ReadPosRankSum=2.381;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1355,165,0 chrV 298190 . A G 2152 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2185,249,0 chrV 298538 . T C 2666 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.8969;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.03;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2699,300,0 chrV 298743 . A G 2579 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.62;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2612,300,0 chrV 298831 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.7130;MLEAC=2;MLEAF=1.00;MQ=60.73;MQ0=0;QD=21.71;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2595,300,0 chrV 299126 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.4080;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.786;QD=20.47;ReadPosRankSum=1.684;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4422,507,0 chrV 299183 . G T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.57;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4175,468,0 chrV 299186 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.330;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.875;QD=19.68;ReadPosRankSum=0.525;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3896,422,0 chrV 299219 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9696;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.34;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2693,303,0 chrV 299237 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.07;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2545,282,0 chrV 299333 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.03;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3051,339,0 chrV 299795 . T C 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=4.049;HaplotypeScore=13.2008;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.087;QD=22.14;ReadPosRankSum=1.714;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4207,489,0 chrV 299873 . A C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.102;DP=176;Dels=0.00;FS=5.252;HaplotypeScore=19.9923;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.511;QD=20.03;ReadPosRankSum=3.360;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:3526,405,0 chrV 300269 . T A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4151,465,0 chrV 300738 . G A 5274.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=18.0366;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.61;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5274,612,0 chrV 300974 . C T 5127.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.9091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5127,570,0 chrV 301091 . G A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4267,477,0 chrV 301211 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4422,510,0 chrV 301517 . C G 3348.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.67;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3348,390,0 chrV 301562 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=9.7104;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.72;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2706,300,0 chrV 301830 . G C 2114 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.30;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2147,240,0 chrV 301857 . A G 1850 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.56;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1883,213,0 chrV 301867 . C A 1870 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.78;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1903,207,0 chrV 301899 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.37;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2067,225,0 chrV 301990 . T C 2716 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.5388;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.63;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2749,312,0 chrV 302478 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.44;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3770,420,0 chrV 302509 . T C 3954.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.86;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3954,456,0 chrV 302655 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=191;Dels=0.00;FS=6.067;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.582;QD=21.97;ReadPosRankSum=2.910;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4196,477,0 chrV 302761 . C T 6117.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.80;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:6117,666,0 chrV 303277 . T A 2749 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.15;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2782,309,0 chrV 303371 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.54;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2108,234,0 chrV 303374 . A G 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.294;QD=19.68;ReadPosRankSum=1.699;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2119,243,0 chrV 303444 . T C 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.106;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;MQRankSum=-0.339;QD=14.92;ReadPosRankSum=1.092;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1421,140,0 chrV 303475 . A G 1273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.485;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;MQRankSum=-1.533;QD=14.63;ReadPosRankSum=1.692;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1306,150,0 chrV 303485 . T C 1167 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=0;QD=14.59;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1200,138,0 chrV 303487 . A G 1109 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=0;QD=14.04;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1142,132,0 chrV 303494 . A T 1039 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=11.67;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1072,123,0 chrV 303521 . T C 973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=62.9967;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;MQRankSum=-1.436;QD=11.87;ReadPosRankSum=1.690;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1006,117,0 chrV 303560 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=15.95;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1660,183,0 chrV 303778 . A G 2549 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.61;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2582,309,0 chrV 304224 . T C 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=213;Dels=0.00;FS=9.868;HaplotypeScore=18.4439;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.077;QD=21.63;ReadPosRankSum=2.957;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:3,207:213:99:4607,513,0 chrV 304272 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=191;Dels=0.00;FS=6.053;HaplotypeScore=18.4932;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.042;QD=20.96;ReadPosRankSum=2.942;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:3,187:191:99:4003,471,0 chrV 304530 . A G 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=227;Dels=0.00;FS=2.972;HaplotypeScore=8.8995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.940;QD=21.51;ReadPosRankSum=2.374;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:4883,567,0 chrV 304611 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.00;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4262,489,0 chrV 304936 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.04;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3408,375,0 chrV 304950 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.46;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3208,366,0 chrV 304983 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=3.037;HaplotypeScore=7.7682;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.102;QD=18.67;ReadPosRankSum=2.356;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2964,345,0 chrV 304998 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.71;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3107,345,0 chrV 305689 . C T 487 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=14.76;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,31:33:60:520,60,0 chrV 305860 . T C 919 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.090;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.161;QD=19.15;ReadPosRankSum=2.348;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,46:48:99:952,111,0 chrV 305933 . T C 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=101.8739;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.816;QD=17.76;ReadPosRankSum=2.834;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2075,240,0 chrV 306189 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.75;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4204,459,0 chrV 307383 . A G 1401 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.75;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1434,171,0 chrV 307978 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=22.52;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2465,270,0 chrV 307980 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=22.83;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2567,279,0 chrV 308111 . A G 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=119;Dels=0.00;FS=2.885;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.251;QD=22.12;ReadPosRankSum=2.326;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2665,309,0 chrV 308135 . G A 2331 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.79;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2364,261,0 chrV 308152 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.57;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2107,228,0 chrV 308551 . A G 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.859;QD=18.41;ReadPosRankSum=1.703;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2261,264,0 chrV 308710 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2965,330,0 chrV 308785 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.45;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4255,474,0 chrV 308891 . A G 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=202;Dels=0.00;FS=3.276;HaplotypeScore=11.5915;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.857;QD=23.72;ReadPosRankSum=1.663;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4791,543,0 chrV 309004 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.30;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4259,480,0 chrV 309040 . A G 3439.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.90;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3439,405,0 chrV 309130 . C G 2990 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.06;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3023,357,0 chrV 309170 . A G 2461 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.51;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2494,288,0 chrV 309420 . T A 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=3.270;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.591;QD=23.39;ReadPosRankSum=1.591;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4023,444,0 chrV 309472 . A G 5161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.7605;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.208;QD=22.94;ReadPosRankSum=1.686;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5161,585,0 chrV 309505 . A G 5281.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.47;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5281,612,0 chrV 309648 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.47;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3254,366,0 chrV 309961 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=141;Dels=0.00;FS=6.497;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.078;QD=22.93;ReadPosRankSum=2.380;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3267,363,0 chrV 310175 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.64;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3925,426,0 chrV 310540 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=3.201;HaplotypeScore=11.6074;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.797;QD=21.71;ReadPosRankSum=1.711;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3582,405,0 chrV 311096 . C T 5829.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=22.2811;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.33;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:5829,645,0 chrV 311266 . A C 5022.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.1528;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.74;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5022,573,0 chrV 311308 . G C 5338.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.41;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,269:275:99:5338,612,0 chrV 311316 . A G 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=8.6468;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.480;QD=18.18;ReadPosRankSum=1.707;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:1,274:277:99:5035,596,0 chrV 311423 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.212;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.334;QD=21.41;ReadPosRankSum=1.316;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3052,337,0 chrV 311515 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=18.0424;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.25;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3754,429,0 chrV 311716 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.32;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3086,342,0 chrV 311744 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=18.37;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2917,327,0 chrV 311789 . C G 2774 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=18.74;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2807,327,0 chrV 311837 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.40;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3647,405,0 chrV 311842 . C T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.05;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3710,414,0 chrV 311900 . G C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=24.4896;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=18.15;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:3431,399,0 chrV 311969 . A C 3982.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=22.37;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3982,453,0 chrV 311996 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=20.12;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2608,294,0 chrV 312007 . T C 2039 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=19.80;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2072,249,0 chrV 312016 . A C 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=88;Dels=0.00;FS=5.339;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=-1.252;QD=19.65;ReadPosRankSum=3.335;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1762,210,0 chrV 312111 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;QD=21.82;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2062,225,0 chrV 312120 . C T 1834 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=19.31;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1867,219,0 chrV 312125 . C T 2042 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=20.84;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2075,228,0 chrV 312133 . C T 1995 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=20.15;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2028,228,0 chrV 312134 . T C 1915 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=19.34;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1948,222,0 chrV 312176 . G A 1511 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;QD=18.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1544,177,0 chrV 312217 . G A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=0.61;SB=-2.977e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:6:55,6,0 chrV 312224 . C G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=0.48;SB=-2.677e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:6:49,6,0 chrV 312225 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=0.46;SB=-2.577e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:6:48,6,0 chrV 312320 . A G 1790 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=23.87;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1823,210,0 chrV 312340 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=20.89;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1704,192,0 chrV 312348 . T C 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;MQRankSum=-0.694;QD=19.08;ReadPosRankSum=2.337;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1693,192,0 chrV 312465 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.97;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2881,327,0 chrV 312495 . A T 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.835;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=1.315;QD=20.27;ReadPosRankSum=1.654;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2729,297,0 chrV 312496 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.8224;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.00;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2598,297,0 chrV 312588 . C T 5095.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.4531;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.92;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5095,567,0 chrV 312636 . T G 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=183;Dels=0.00;FS=8.411;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.533;QD=23.11;ReadPosRankSum=3.354;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:4,178:183:99:4229,489,0 chrV 312677 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.04;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4231,465,0 chrV 312731 . G A 5015.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.4519;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.29;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5015,543,0 chrV 312786 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=203;Dels=0.00;FS=5.786;HaplotypeScore=9.4395;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.708;QD=20.70;ReadPosRankSum=2.866;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:4202,483,0 chrV 312810 . C T 4260.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.99;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4260,465,0 chrV 312956 . T G 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.5256;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.621;QD=18.73;ReadPosRankSum=0.813;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:4570,545,0 chrV 312972 . T C 4652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=244;Dels=0.00;FS=2.774;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.321;QD=19.07;ReadPosRankSum=2.409;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:2,239:244:99:4652,531,0 chrV 313090 . C T 5241.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.48;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5241,570,0 chrV 313100 . G T 5234.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.45;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5234,570,0 chrV 313136 . A G 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.618;DP=249;Dels=0.00;FS=3.792;HaplotypeScore=12.6962;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.737;QD=18.41;ReadPosRankSum=3.687;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:6,243:249:99:4583,512,0 chrV 313147 . C A 4919.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.21;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:4919,540,0 chrV 313206 . C A 5877.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.22;SB=-3.350e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:5877,642,0 chrV 313295 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.56;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4580,525,0 chrV 313343 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=173;Dels=0.00;FS=5.784;HaplotypeScore=14.7164;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.622;QD=21.61;ReadPosRankSum=2.901;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3739,432,0 chrV 313409 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.138;QD=21.64;ReadPosRankSum=2.425;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4414,507,0 chrV 313434 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.93;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4333,477,0 chrV 313473 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.66;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2904,330,0 chrV 313507 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=99.2178;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.66;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2870,315,0 chrV 313613 . A C 2316 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.44;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2349,264,0 chrV 313619 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.306;QD=20.05;ReadPosRankSum=1.698;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2098,240,0 chrV 313716 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.2235;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.27;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2500,276,0 chrV 313820 . G C 1817 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.13;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1850,210,0 chrV 313861 . T C 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.015;QD=20.53;ReadPosRankSum=1.671;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2394,276,0 chrV 313876 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=22.59;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2541,282,0 chrV 313905 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.40;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2481,288,0 chrV 313933 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.17;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2177,249,0 chrV 313937 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=121;Dels=0.00;FS=4.223;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.364;QD=17.77;ReadPosRankSum=1.674;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2183,249,0 chrV 313976 . T C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=118;Dels=0.00;FS=2.592;HaplotypeScore=8.1153;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.440;QD=19.03;ReadPosRankSum=2.871;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2279,264,0 chrV 314032 . A C 2450 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.69;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2483,279,0 chrV 314047 . A G 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=104.2051;MLEAC=1;MLEAF=0.500;MQ=54.81;MQ0=0;MQRankSum=0.111;QD=0.21;ReadPosRankSum=3.295;SB=-1.375e+03 GT:AD:DP:GQ:PL 0/1:4,115:119:34:55,0,34 chrV 314160 . C T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.89;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4252,480,0 chrV 314270 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.33;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2891,315,0 chrV 314287 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.54;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2850,321,0 chrV 314589 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5050;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.47;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4086,450,0 chrV 314632 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.41;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3743,423,0 chrV 314777 . G T 5073.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5073,561,0 chrV 315416 . C T 4704.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.6362;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.29;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4704,522,0 chrV 315857 . T G 2688 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.03;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2721,312,0 chrV 315976 . T A 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=3.132;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.383;QD=20.64;ReadPosRankSum=1.700;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2283,249,0 chrV 316086 . T C 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.682;DP=111;Dels=0.00;FS=13.182;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.736;QD=21.32;ReadPosRankSum=2.919;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2400,270,0 chrV 316219 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.4808;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.56;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1891,216,0 chrV 316222 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.54;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1964,216,0 chrV 316361 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2611,300,0 chrV 316556 . C G 2520 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.11;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2553,294,0 chrV 316681 . G C 1471 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=20.15;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:73:99:1504,174,0 chrV 317040 . A G 4283.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.06;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4283,489,0 chrV 317278 . A G 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=219;Dels=0.00;FS=11.613;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.092;QD=22.21;ReadPosRankSum=2.922;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:4863,549,0 chrV 317359 . A G 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.088;QD=20.97;ReadPosRankSum=1.713;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3838,444,0 chrV 317416 . G A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.81;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4417,486,0 chrV 317740 . G T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3247,363,0 chrV 317802 . A T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.20;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3411,381,0 chrV 317845 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.62;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3222,369,0 chrV 318016 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7130;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.23;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4223,495,0 chrV 318309 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3840,441,0 chrV 318414 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2965,330,0 chrV 318564 . T A 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.505;QD=24.16;ReadPosRankSum=1.708;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3479,381,0 chrV 318778 . T C 1359 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.41;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1392,168,0 chrV 319090 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8732;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.42;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4035,471,0 chrV 319404 . C A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.25;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3975,429,0 chrV 319971 . G A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.51;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3622,393,0 chrV 320053 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.9182;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.20;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3086,342,0 chrV 320301 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.629;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.061;QD=20.03;ReadPosRankSum=1.708;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2917,339,0 chrV 320548 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.32;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2655,300,0 chrV 320565 . A G 2581 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.32;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2614,300,0 chrV 320982 . T A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.87;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3700,414,0 chrV 321046 . A T 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.313;QD=23.49;ReadPosRankSum=1.717;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3782,420,0 chrV 321126 . T C 2670 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.19;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2703,312,0 chrV 321168 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=172;Dels=0.00;FS=2.982;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.438;QD=19.22;ReadPosRankSum=2.378;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3306,372,0 chrV 321180 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.47;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3807,417,0 chrV 321213 . T C 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=210;Dels=0.00;FS=2.974;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.649;QD=21.42;ReadPosRankSum=2.414;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4499,507,0 chrV 321279 . A T 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=173;Dels=0.00;FS=7.479;HaplotypeScore=10.9794;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.121;QD=22.66;ReadPosRankSum=2.392;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3920,438,0 chrV 321401 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.56;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3924,459,0 chrV 321483 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=156;Dels=0.00;FS=7.417;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.997;QD=20.30;ReadPosRankSum=2.417;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:2,150:156:99:3200,375,0 chrV 321624 . G T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.87;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3461,378,0 chrV 321779 . A G 2624 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=20.83;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2657,306,0 chrV 321783 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=20.40;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2685,303,0 chrV 321819 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=19.76;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2700,306,0 chrV 321832 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8158;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=19.24;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2669,300,0 chrV 321873 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=146;Dels=0.00;FS=3.522;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.890;QD=19.06;ReadPosRankSum=1.708;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2816,330,0 chrV 321889 . T C 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=145;Dels=0.00;FS=6.752;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=0.198;QD=19.26;ReadPosRankSum=2.415;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2826,324,0 chrV 321901 . G T 2981 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.36;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3014,336,0 chrV 321936 . T A 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1127;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=-0.405;QD=14.56;ReadPosRankSum=1.665;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2275,258,0 chrV 321958 . T C 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=150;Dels=0.00;FS=6.978;HaplotypeScore=7.1005;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;MQRankSum=-1.790;QD=13.47;ReadPosRankSum=2.351;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2054,237,0 chrV 321977 . A G 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.167;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;MQRankSum=-0.946;QD=13.03;ReadPosRankSum=1.658;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:1870,219,0 chrV 321983 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=13.71;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1884,216,0 chrV 321991 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=13.08;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1760,201,0 chrV 322096 . T C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.105;DP=117;Dels=0.00;FS=4.517;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.299;QD=21.61;ReadPosRankSum=-0.508;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2561,269,0 chrV 322554 . G C 1911 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=7.7000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.23;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1944,219,0 chrV 322875 . T C 3130 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.9254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3163,363,0 chrV 323078 . C T 5788.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5788,648,0 chrV 324121 . A G 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.520;QD=20.85;ReadPosRankSum=1.473;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:99:867,99,0 chrV 324122 . C G 832 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.33;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:99:865,99,0 chrV 324202 . A T 299 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.59;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:36:332,36,0 chrV 324410 . A G 3127 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.16;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3160,380,0 chrV 325346 . A G 6348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=17.1609;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.062;QD=20.75;ReadPosRankSum=1.709;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,299:306:99:6348,723,0 chrV 325661 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.69;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3745,426,0 chrV 325958 . A T 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=3.045;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.584;QD=20.43;ReadPosRankSum=2.342;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1892,210,0 chrV 326225 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.06;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2151,249,0 chrV 326423 . C G 2967 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3000,339,0 chrV 326990 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.03;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3021,327,0 chrV 326999 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=19.82;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3144,342,0 chrV 327059 . A G 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=158;Dels=0.00;FS=2.575;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.930;QD=17.57;ReadPosRankSum=2.956;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:2809,324,0 chrV 327079 . T C 2592 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.20;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2625,300,0 chrV 327363 . A C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=161;Dels=0.00;FS=6.982;HaplotypeScore=9.8054;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.925;QD=19.39;ReadPosRankSum=2.403;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,156:161:99:3155,354,0 chrV 327452 . C T 4651.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.0322;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.95;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4651,513,0 chrV 327970 . G A 2301 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.50;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2334,258,0 chrV 328044 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.39;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2557,282,0 chrV 328168 . C A 1450 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.90;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1483,165,0 chrV 328169 . C T 1508 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.62;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1541,165,0 chrV 328172 . A G 1485 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=86;Dels=0.00;FS=6.058;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-0.217;QD=17.27;ReadPosRankSum=2.820;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:3,81:86:99:1518,171,0 chrV 328176 . C G 1271 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=16.09;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1304,150,0 chrV 328266 . A T 1792 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=3.055;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.097;QD=20.13;ReadPosRankSum=2.339;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1825,198,0 chrV 328271 . G A 1626 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.13;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1659,183,0 chrV 328273 . C G 1497 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=17.41;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1530,177,0 chrV 328370 . A T 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=115;Dels=0.00;FS=10.939;HaplotypeScore=7.2612;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.053;QD=22.37;ReadPosRankSum=2.407;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2606,288,0 chrV 329070 . G A 7277.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=17.1271;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.03;SB=-3.943e+03 GT:AD:DP:GQ:PL 1/1:0,344:346:99:7277,831,0 chrV 329109 . C G 7187.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=16.7217;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.26;SB=-3.805e+03 GT:AD:DP:GQ:PL 1/1:0,335:338:99:7187,834,0 chrV 329730 . C T 4785.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.55;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4785,543,0 chrV 330290 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.48;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2029,222,0 chrV 330515 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.02;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2726,297,0 chrV 330553 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.16;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3252,372,0 chrV 330953 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=154;Dels=0.00;FS=6.050;HaplotypeScore=18.8800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.033;QD=22.53;ReadPosRankSum=2.901;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:3,149:154:99:3469,396,0 chrV 332219 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=162;Dels=0.00;FS=6.969;HaplotypeScore=10.2524;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.098;QD=23.14;ReadPosRankSum=2.357;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3748,438,0 chrV 332391 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.36;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3270,360,0 chrV 332460 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.48;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2933,318,0 chrV 332482 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.94;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3214,351,0 chrV 333114 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.91;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1293,153,0 chrV 333160 . A T 1324 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=50.3015;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=16.97;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1357,153,0 chrV 333164 . T C 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.334;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.299;QD=17.97;ReadPosRankSum=1.613;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1596,183,0 chrV 333251 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5116;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.45;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3062,333,0 chrV 333308 . C T 1918 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.31;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1951,216,0 chrV 333311 . C T 1887 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.29;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1920,213,0 chrV 333317 . C G 1752 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.84;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1785,204,0 chrV 333453 . G A 4413.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.7425;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.74;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4413,480,0 chrV 333669 . C G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.64;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3516,396,0 chrV 333688 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.23;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3403,402,0 chrV 334031 . A G 4468.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.57;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4468,507,0 chrV 334115 . A G 5615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=264;Dels=0.00;FS=3.319;HaplotypeScore=13.6579;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.256;QD=21.27;ReadPosRankSum=1.719;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:5615,657,0 chrV 334175 . A C 4579.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.5440;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.91;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4579,522,0 chrV 334208 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=191;Dels=0.00;FS=2.959;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.701;QD=17.62;ReadPosRankSum=2.424;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3365,390,0 chrV 334216 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.97;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3593,408,0 chrV 334274 . T G 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=234;Dels=0.00;FS=6.190;HaplotypeScore=12.9728;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.163;QD=18.71;ReadPosRankSum=2.376;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:4377,504,0 chrV 334331 . T C 6141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=275;Dels=0.00;FS=9.515;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.347;QD=22.33;ReadPosRankSum=2.975;SB=-3.375e+03 GT:AD:DP:GQ:PL 1/1:3,272:275:99:6141,716,0 chrV 334460 . T C 6804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.999;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=16.7590;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.892;QD=22.31;ReadPosRankSum=3.157;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:5,300:305:99:6804,792,0 chrV 334676 . T C 6622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=335;Dels=0.00;FS=7.179;HaplotypeScore=21.5003;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.357;QD=19.77;ReadPosRankSum=2.420;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:2,332:335:99:6622,797,0 chrV 334747 . T C 5357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=296;Dels=0.00;FS=11.398;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.190;QD=18.10;ReadPosRankSum=2.895;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:3,293:296:99:5357,629,0 chrV 334750 . C T 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.831;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.316;QD=18.43;ReadPosRankSum=-0.152;SB=-3.246e+03 GT:AD:DP:GQ:PL 1/1:1,295:297:99:5475,614,0 chrV 335065 . C T 7165.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=27.3651;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.20;SB=-3.271e+03 GT:AD:DP:GQ:PL 1/1:0,336:338:99:7165,813,0 chrV 335254 . C T 6057.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=12.2746;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.99;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,301:303:99:6057,658,0 chrV 335262 . G A 5703.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.14;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,298:298:99:5703,636,0 chrV 335310 . C G 4805.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.94;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:4805,549,0 chrV 335352 . A T 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=204;Dels=0.00;FS=9.151;HaplotypeScore=11.7213;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-0.766;QD=20.45;ReadPosRankSum=3.400;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4171,462,0 chrV 335362 . A T 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.629;DP=205;Dels=0.00;FS=1.712;HaplotypeScore=5.3902;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-1.645;QD=17.97;ReadPosRankSum=2.790;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:5,200:205:99:3683,423,0 chrV 335373 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6692;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.382;QD=18.04;ReadPosRankSum=1.679;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3518,408,0 chrV 335461 . C T 5730.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.97;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5730,639,0 chrV 335567 . C T 4533.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.5797;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.08;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4533,501,0 chrV 335661 . G T 5885.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=14.4894;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.88;SB=-3.578e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:5885,666,0 chrV 335687 . C T 5327.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.18;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5327,594,0 chrV 335812 . T C 5615.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=18.3089;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.37;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5615,639,0 chrV 335874 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.6616;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.98;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5057,564,0 chrV 336237 . G A 5327.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=24.4724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-3.199e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5327,597,0 chrV 336549 . C T 4979.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.66;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:4979,549,0 chrV 336702 . A G 6434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=295;Dels=0.00;FS=14.720;HaplotypeScore=22.8170;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.498;QD=21.81;ReadPosRankSum=3.324;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:4,289:295:99:6434,732,0 chrV 336936 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=17.19;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:4350,515,0 chrV 336939 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=257;Dels=0.00;FS=5.234;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-1.570;QD=17.12;ReadPosRankSum=1.678;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:4400,504,0 chrV 337281 . G C 2459 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2492,288,0 chrV 337365 . T G 2287 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.79;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2320,267,0 chrV 337672 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.73;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2002,228,0 chrV 337748 . A G 2585 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.02;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2618,300,0 chrV 337825 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.41;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2890,318,0 chrV 337830 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=151;Dels=0.00;FS=2.541;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-2.075;QD=18.41;ReadPosRankSum=2.858;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:4,146:151:99:2813,330,0 chrV 337863 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0967;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.18;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3633,426,0 chrV 338269 . T C 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=191;Dels=0.00;FS=4.014;HaplotypeScore=12.8871;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.156;QD=21.83;ReadPosRankSum=1.677;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4170,492,0 chrV 338308 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.480;QD=23.94;ReadPosRankSum=1.713;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4237,486,0 chrV 338516 . C A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.4175;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=23.18;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4868,540,0 chrV 338632 . G A 4618.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.0125;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.31;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4618,525,0 chrV 338773 . A T 6419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=275;Dels=0.00;FS=7.904;HaplotypeScore=13.0991;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.789;QD=23.34;ReadPosRankSum=2.396;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:2,273:275:99:6419,714,0 chrV 339113 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.89;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4029,450,0 chrV 339244 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=3.122;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.351;QD=22.34;ReadPosRankSum=1.710;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3530,414,0 chrV 339325 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.73;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4461,510,0 chrV 339466 . A G 2321 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=92.7848;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=20.18;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2354,270,0 chrV 339493 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.45;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2221,249,0 chrV 339555 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.47;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1603,174,0 chrV 339574 . T C 1149 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.53;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1182,132,0 chrV 339635 . T G 789 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.21;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:822,96,0 chrV 339960 . A G 3032 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3065,348,0 chrV 340071 . T C 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=3.184;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.016;QD=22.43;ReadPosRankSum=1.713;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4037,465,0 chrV 340292 . T C 4797.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.3293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4797,564,0 chrV 340779 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3714,435,0 chrV 341139 . A G 5549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=255;Dels=0.00;FS=2.995;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.792;QD=21.76;ReadPosRankSum=2.382;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5549,630,0 chrV 341670 . C T 4825.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.34;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4825,549,0 chrV 341688 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=216;Dels=0.00;FS=3.114;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.353;QD=21.16;ReadPosRankSum=1.666;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:1,211:216:99:4570,534,0 chrV 342057 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.0319;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.27;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3964,435,0 chrV 342537 . G A 2690 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9686;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.07;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2723,306,0 chrV 342731 . C A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=28.4727;MLEAC=2;MLEAF=1.00;MQ=60.74;MQ0=0;QD=23.01;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3635,405,0 chrV 342945 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.26;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4803,531,0 chrV 343116 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.86;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4458,486,0 chrV 343233 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.82;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3863,429,0 chrV 343263 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.65;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3465,378,0 chrV 343350 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.44;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2479,273,0 chrV 344171 . C G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=15.0013;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.09;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,169:174:99:3340,393,0 chrV 344307 . A G 3083 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.18;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3116,363,0 chrV 344574 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.32;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3551,393,0 chrV 345204 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3006,345,0 chrV 345278 . A G 2445 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2478,285,0 chrV 345845 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.28;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3609,402,0 chrV 346125 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.83;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4566,525,0 chrV 346317 . C T 5238.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.3748;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.92;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5238,579,0 chrV 346405 . T G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=187;Dels=0.00;FS=6.877;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.007;QD=20.29;ReadPosRankSum=2.423;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3795,435,0 chrV 346425 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.85;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4089,471,0 chrV 346707 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.44;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4241,477,0 chrV 346966 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.00;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3400,372,0 chrV 346971 . T A 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=3.161;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=1.260;QD=18.19;ReadPosRankSum=1.516;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3235,351,0 chrV 347145 . C G 4526.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.33;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4526,522,0 chrV 347202 . T A 4894.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.64;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4894,543,0 chrV 347367 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.464;DP=199;Dels=0.00;FS=13.470;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.336;QD=21.54;ReadPosRankSum=2.155;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:4,194:199:99:4286,476,0 chrV 347710 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.06;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3102,354,0 chrV 347954 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.85;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4108,474,0 chrV 348010 . G C 3047 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.16;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3080,357,0 chrV 348013 . T C 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5680;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.978;QD=18.97;ReadPosRankSum=1.069;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3106,327,0 chrV 348215 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=139;Dels=0.00;FS=5.264;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.241;QD=21.04;ReadPosRankSum=3.358;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:2958,333,0 chrV 348249 . G T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.33;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3290,363,0 chrV 348378 . A C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=134;Dels=0.00;FS=3.216;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.426;QD=20.66;ReadPosRankSum=1.705;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,129:134:99:2802,327,0 chrV 348419 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2988,336,0 chrV 348697 . G T 2933 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.09;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2966,336,0 chrV 348780 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3418,393,0 chrV 349106 . C T 5416.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.1635;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.66;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5416,600,0 chrV 349284 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.50;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3736,426,0 chrV 349414 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.19;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3619,408,0 chrV 349434 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.28;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3656,387,0 chrV 349449 . A C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=4.046;HaplotypeScore=11.5488;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.172;QD=18.55;ReadPosRankSum=1.715;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3672,411,0 chrV 349582 . T C 6348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=286;Dels=0.00;FS=2.771;HaplotypeScore=16.5309;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.013;QD=22.20;ReadPosRankSum=2.364;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:2,284:286:99:6348,720,0 chrV 349693 . C T 5537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=250;Dels=0.00;FS=3.207;HaplotypeScore=17.3100;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.482;QD=22.15;ReadPosRankSum=1.593;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5537,606,0 chrV 349876 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=180;Dels=0.00;FS=16.854;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.335;QD=20.38;ReadPosRankSum=3.697;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:5,173:180:99:3668,417,0 chrV 350100 . A G 6031.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.6514;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.69;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6031,719,0 chrV 350180 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.176;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=16.0763;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.606;QD=18.26;ReadPosRankSum=1.418;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:4437,488,0 chrV 350201 . A G 4358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=240;Dels=0.00;FS=2.444;HaplotypeScore=12.6182;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.059;QD=18.16;ReadPosRankSum=2.937;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:3,235:240:99:4358,498,0 chrV 350270 . A G 6262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=15.8597;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.828;QD=21.82;ReadPosRankSum=2.415;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,284:287:99:6262,729,0 chrV 350516 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=195;Dels=0.00;FS=8.807;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.237;QD=21.32;ReadPosRankSum=3.388;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4157,477,0 chrV 350543 . G A 4961.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.7171;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.51;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4961,537,0 chrV 350741 . C T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.4008;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.48;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:4731,516,0 chrV 350747 . T C 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.084;DP=233;Dels=0.00;FS=15.327;HaplotypeScore=4.6309;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.101;QD=19.11;ReadPosRankSum=4.022;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:6,227:233:99:4453,501,0 chrV 351071 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.06;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4231,465,0 chrV 351084 . T A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=18.44;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4075,441,0 chrV 351098 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=17.01;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3590,423,0 chrV 351279 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=194;Dels=0.00;FS=3.003;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.045;QD=20.44;ReadPosRankSum=2.411;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:3965,465,0 chrV 351505 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.47;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3842,420,0 chrV 351775 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.33;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3796,435,0 chrV 352270 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.385;QD=20.18;ReadPosRankSum=1.694;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3672,423,0 chrV 352273 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=180;Dels=0.00;FS=11.646;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.051;QD=19.73;ReadPosRankSum=2.926;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:3,174:180:99:3551,414,0 chrV 352394 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4304,489,0 chrV 352574 . T A 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.545;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.377;QD=23.17;ReadPosRankSum=1.682;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3231,357,0 chrV 352751 . A T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.0885;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.65;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4328,468,0 chrV 353407 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.97;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2698,297,0 chrV 353446 . T G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=128;Dels=0.00;FS=2.278;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=1.230;QD=22.09;ReadPosRankSum=2.865;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2861,330,0 chrV 353499 . G T 3100 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.31;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3133,339,0 chrV 353535 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.433;QD=21.23;ReadPosRankSum=1.674;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2581,294,0 chrV 353583 . C A 2540 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.09;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2573,291,0 chrV 353643 . T G 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.294;QD=18.75;ReadPosRankSum=1.560;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:3,107:111:99:2114,224,0 chrV 353654 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.73;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2189,240,0 chrV 353683 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.40;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1507,171,0 chrV 353687 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=14.10;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1655,183,0 chrV 353854 . C A 2807 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.10;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2840,327,0 chrV 353975 . T C 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.680;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=1.004;QD=21.87;ReadPosRankSum=1.441;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2658,303,0 chrV 354000 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=23.46;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2402,267,0 chrV 354813 . G T 2442 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=23.94;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2475,279,0 chrV 354824 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=4.412;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;MQRankSum=-0.060;QD=23.15;ReadPosRankSum=1.672;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2765,315,0 chrV 354901 . C G 3283.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=21.74;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3283,390,0 chrV 355019 . T C 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.645;DP=141;Dels=0.01;FS=17.943;HaplotypeScore=226.1327;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;MQRankSum=-3.713;QD=12.82;ReadPosRankSum=1.719;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:7,132:139:99:1841,207,0 chrV 355038 . G T 1658 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=102.5580;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=11.36;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1691,189,0 chrV 355357 . T C 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=142;Dels=0.00;FS=2.986;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.251;QD=20.52;ReadPosRankSum=2.415;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2947,330,0 chrV 355369 . A T 3003 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.89;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3036,345,0 chrV 355510 . G A 4603.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.7972;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.02;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4603,510,0 chrV 355522 . T G 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.071;QD=20.61;ReadPosRankSum=1.679;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4019,474,0 chrV 355825 . T G 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=4.267;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.021;QD=21.57;ReadPosRankSum=1.697;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4207,483,0 chrV 355846 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.51;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4001,444,0 chrV 356203 . T C 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=142;Dels=0.00;FS=2.962;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.166;QD=19.63;ReadPosRankSum=2.415;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2821,324,0 chrV 356220 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.757;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.117;QD=20.48;ReadPosRankSum=1.706;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2777,312,0 chrV 356363 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.06;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2771,303,0 chrV 356365 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.37;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2661,294,0 chrV 356412 . G T 2708 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.07;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2741,297,0 chrV 356434 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.28;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3512,384,0 chrV 356575 . T C 2883 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.18;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2916,330,0 chrV 356686 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.5648;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.81;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2605,291,0 chrV 356782 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=157;Dels=0.00;FS=2.652;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.277;QD=21.79;ReadPosRankSum=2.418;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3421,390,0 chrV 356812 . A G 4140.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.14;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4140,468,0 chrV 356837 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=5.759;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.343;QD=21.54;ReadPosRankSum=1.693;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3834,432,0 chrV 357558 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.120;DP=185;Dels=0.00;FS=9.167;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.156;QD=21.91;ReadPosRankSum=3.403;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:4054,465,0 chrV 357591 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.14;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3862,423,0 chrV 357652 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.02;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3363,390,0 chrV 357733 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.57;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3204,357,0 chrV 357876 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.0699;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.52;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2597,285,0 chrV 358073 . T A 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.126;QD=22.25;ReadPosRankSum=1.684;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3215,351,0 chrV 358357 . G A 7378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=331;Dels=0.00;FS=3.799;HaplotypeScore=19.9839;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.334;QD=22.29;ReadPosRankSum=1.345;SB=-3.446e+03 GT:AD:DP:GQ:PL 1/1:1,330:331:99:7378,816,0 chrV 359032 . A G 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.0687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.699;QD=22.45;ReadPosRankSum=1.699;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4669,543,0 chrV 359108 . T A 5165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=3.508;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.982;QD=22.36;ReadPosRankSum=1.612;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5165,567,0 chrV 359214 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4250,462,0 chrV 359292 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.8732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3954,450,0 chrV 360015 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.31;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3792,432,0 chrV 360247 . A G 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.247;QD=21.85;ReadPosRankSum=1.697;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2218,252,0 chrV 360318 . C A 1706 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.39;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1739,195,0 chrV 360556 . A G 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=118;Dels=0.00;FS=10.863;HaplotypeScore=10.0660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.853;QD=22.42;ReadPosRankSum=2.277;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:2,112:118:99:2678,306,0 chrV 360895 . G C 2624 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2657,306,0 chrV 361243 . T C 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.586;QD=22.57;ReadPosRankSum=1.649;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3791,444,0 chrV 361905 . G T 5606.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.55;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5606,618,0 chrV 361960 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=180;Dels=0.00;FS=3.012;HaplotypeScore=9.8110;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.542;QD=22.80;ReadPosRankSum=2.408;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4104,462,0 chrV 362194 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=21.17;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2849,312,0 chrV 362205 . A G 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=125;Dels=0.00;FS=8.118;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.400;QD=20.75;ReadPosRankSum=3.303;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:4,121:125:99:2627,306,0 chrV 362296 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=157;Dels=0.00;FS=7.835;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=1.714;QD=20.59;ReadPosRankSum=2.418;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3268,369,0 chrV 362305 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=20.82;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3072,336,0 chrV 362343 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=16.13;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2388,261,0 chrV 362344 . A T 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=142;Dels=0.00;FS=6.090;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=0;MQRankSum=-2.029;QD=15.87;ReadPosRankSum=2.837;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:2286,258,0 chrV 362389 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;QD=14.65;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:2788,321,0 chrV 362397 . G T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=16.09;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3299,369,0 chrV 362438 . T A 5063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;MQRankSum=-1.598;QD=20.92;ReadPosRankSum=2.419;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5063,552,0 chrV 362609 . C T 6185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.003;DP=270;Dels=0.01;FS=0.000;HaplotypeScore=23.6841;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;MQRankSum=1.289;QD=22.91;ReadPosRankSum=-0.690;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,265:267:99:6185,705,0 chrV 362681 . T G 2967 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=19.27;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3000,348,0 chrV 362682 . G C 3069 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.8110;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=19.42;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3102,357,0 chrV 362788 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=18.38;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3250,369,0 chrV 362832 . C T 2080 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=15.41;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2113,234,0 chrV 362834 . A T 1913 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=133;Dels=0.00;FS=7.101;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;MQRankSum=-1.766;QD=14.38;ReadPosRankSum=2.394;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:1946,225,0 chrV 362837 . G A 2001 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;MQRankSum=1.299;QD=14.71;ReadPosRankSum=-0.458;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2034,228,0 chrV 362845 . C A 1712 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=13.27;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1745,198,0 chrV 362962 . T C 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=3.722;HaplotypeScore=6.6060;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;MQRankSum=-1.657;QD=16.68;ReadPosRankSum=1.508;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2368,267,0 chrV 363002 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.21;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2857,312,0 chrV 363023 . T C 3096 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=22.27;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3129,351,0 chrV 363243 . T C 3536.01 filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=6;QD=22.96;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3536,405,0 chrV 363833 . T C 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.406;QD=22.06;ReadPosRankSum=2.401;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2239,264,0 chrV 363993 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.65;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3068,339,0 chrV 364059 . T A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.95;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3260,357,0 chrV 364082 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.68;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3454,393,0 chrV 364150 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3124,342,0 chrV 364196 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.37;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3272,363,0 chrV 364465 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.08;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2564,282,0 chrV 364493 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=16.12;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2370,261,0 chrV 365839 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.506;DP=213;Dels=0.00;FS=11.049;HaplotypeScore=13.9469;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.643;QD=21.00;ReadPosRankSum=3.771;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:5,208:213:99:4473,519,0 chrV 366037 . T C 5705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=251;Dels=0.00;FS=3.028;HaplotypeScore=13.8986;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.732;QD=22.73;ReadPosRankSum=1.677;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5705,645,0 chrV 366285 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.58;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4103,447,0 chrV 366457 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.18;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2299,264,0 chrV 366524 . A T 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.818;QD=20.69;ReadPosRankSum=1.656;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1916,210,0 chrV 366566 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=6.9113;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.32;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1568,171,0 chrV 367182 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=193;Dels=0.00;FS=2.714;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.177;QD=21.71;ReadPosRankSum=2.424;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4190,480,0 chrV 367509 . G T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.4143;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.52;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3740,414,0 chrV 367672 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4354,495,0 chrV 367745 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.77;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4049,468,0 chrV 367786 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.99;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4343,480,0 chrV 368184 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.14;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3035,339,0 chrV 368706 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.315;QD=21.72;ReadPosRankSum=1.649;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,165:171:99:3714,417,0 chrV 368771 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3354,378,0 chrV 368857 . T G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=130;Dels=0.00;FS=3.044;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.148;QD=20.40;ReadPosRankSum=1.705;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2685,312,0 chrV 369120 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.7853;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.87;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3073,336,0 chrV 369437 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.4266;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.11;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2503,285,0 chrV 369472 . T G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=2.800;HaplotypeScore=8.8884;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.469;QD=21.87;ReadPosRankSum=2.397;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3073,351,0 chrV 369590 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.12;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3329,369,0 chrV 370163 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.58;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3662,408,0 chrV 370253 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=22.38;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3559,402,0 chrV 370268 . A T 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-1.055;QD=20.99;ReadPosRankSum=1.672;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3653,414,0 chrV 370286 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=179;Dels=0.00;FS=2.568;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=1.074;QD=19.54;ReadPosRankSum=2.903;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:3,173:179:99:3498,399,0 chrV 370316 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.58;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3485,393,0 chrV 370346 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.67;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3363,375,0 chrV 370367 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=7.3215;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=21.05;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3431,378,0 chrV 370417 . T C 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5839;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=-1.732;QD=16.86;ReadPosRankSum=1.693;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3017,351,0 chrV 370435 . T G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=2.863;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=-1.242;QD=17.83;ReadPosRankSum=2.407;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3171,366,0 chrV 370455 . A G 2605 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=16.38;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2638,303,0 chrV 370463 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=15.70;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2530,285,0 chrV 370471 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=16.59;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2455,270,0 chrV 370573 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=22.30;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3702,408,0 chrV 370590 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=-1.482;QD=20.73;ReadPosRankSum=1.711;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3442,399,0 chrV 370598 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=159;Dels=0.00;FS=2.580;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-1.249;QD=19.62;ReadPosRankSum=2.803;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3153,357,0 chrV 370611 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=1.594;QD=19.47;ReadPosRankSum=1.709;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:2993,342,0 chrV 370718 . C T 2987 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=19.78;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3020,348,0 chrV 370724 . T C 2718 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=19.01;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2751,332,0 chrV 370727 . C T 3014 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=20.23;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3047,345,0 chrV 370746 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=20.56;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3220,360,0 chrV 370850 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=18.08;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2636,300,0 chrV 370865 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=15.24;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2289,267,0 chrV 370893 . A T 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.935;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;MQRankSum=-1.613;QD=13.15;ReadPosRankSum=1.685;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:1953,225,0 chrV 370904 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;QD=10.97;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:1701,204,0 chrV 370913 . T C 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=152;Dels=0.00;FS=2.978;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;MQRankSum=-2.304;QD=10.68;ReadPosRankSum=2.353;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:1656,198,0 chrV 370940 . T C 2120 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5034;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=14.83;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2153,258,0 chrV 371070 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=23.07;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3691,414,0 chrV 371210 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.41;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2774,306,0 chrV 371216 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.54;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2600,285,0 chrV 371288 . A G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.395;QD=20.00;ReadPosRankSum=1.701;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2293,264,0 chrV 371302 . T C 2579 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.49;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2612,297,0 chrV 371398 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.98;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2623,285,0 chrV 371820 . G A 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=3.446;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;MQRankSum=-1.511;QD=18.73;ReadPosRankSum=-0.496;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:2992,330,0 chrV 371829 . T A 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;MQRankSum=0.656;QD=17.22;ReadPosRankSum=1.689;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2806,309,0 chrV 371849 . C T 2076 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;QD=14.62;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2109,231,0 chrV 371856 . T G 1819 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=13.09;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1852,213,0 chrV 371859 . C T 1819 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=12.81;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1852,204,0 chrV 371986 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=6.569;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.499;QD=17.81;ReadPosRankSum=1.673;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2152,243,0 chrV 372248 . T A 1367 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.17;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1400,153,0 chrV 372263 . A G 1215 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=58.0520;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.92;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1248,147,0 chrV 372402 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.37;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2605,294,0 chrV 372487 . T C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=124;Dels=0.00;FS=2.960;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.905;QD=22.67;ReadPosRankSum=2.348;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:2,119:124:99:2844,327,0 chrV 372822 . A T 2130 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.30;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2163,243,0 chrV 372836 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.89;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2185,240,0 chrV 373154 . A C 1625 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.26;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1658,183,0 chrV 373232 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.07;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1192,138,0 chrV 373400 . T A 607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=-1.599;QD=16.86;ReadPosRankSum=2.239;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:2,33:35:69:640,69,0 chrV 373403 . C T 620 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=16.32;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:653,72,0 chrV 373416 . G C 1287 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.87;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1320,153,0 chrV 373736 . A G 5561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=23.1610;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.169;QD=19.04;ReadPosRankSum=1.696;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:1,289:292:99:5561,630,0 chrV 373862 . C T 4661.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.30;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4661,531,0 chrV 374069 . G T 4874.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.78;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4874,543,0 chrV 374386 . C T 4905.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.3995;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.61;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4905,564,0 chrV 374513 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=197;Dels=0.00;FS=9.409;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.335;QD=20.43;ReadPosRankSum=2.323;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,192:197:99:4024,474,0 chrV 374552 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.11;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3998,444,0 chrV 374657 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.82;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3620,396,0 chrV 374678 . A T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.97;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3521,387,0 chrV 374891 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6544;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.32;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2216,240,0 chrV 374915 . T G 2091 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.70;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2124,246,0 chrV 374973 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=17.83;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1210,135,0 chrV 375017 . C A 1364 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.65;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1397,153,0 chrV 375120 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.61;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1299,141,0 chrV 375133 . G C 1151 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.93;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1184,132,0 chrV 375429 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.71;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3841,414,0 chrV 375464 . T C 4493.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.60;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4493,525,0 chrV 375548 . A G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.052;DP=122;Dels=0.00;FS=5.283;HaplotypeScore=11.7952;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.805;QD=20.51;ReadPosRankSum=3.356;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:4,117:122:99:2535,288,0 chrV 375604 . T C 2391 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.97;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2424,282,0 chrV 375629 . A G 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.013;QD=20.57;ReadPosRankSum=1.707;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2851,321,0 chrV 375681 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.05;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2566,282,0 chrV 375684 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=134;Dels=0.00;FS=2.667;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-0.028;QD=17.51;ReadPosRankSum=2.413;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2379,276,0 chrV 375717 . T C 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.8519;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.100;QD=19.21;ReadPosRankSum=1.675;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,120:126:99:2454,282,0 chrV 375788 . C A 2521 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.51;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2554,279,0 chrV 375805 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.202;QD=18.87;ReadPosRankSum=1.703;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2297,261,0 chrV 375822 . C G 2008 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.61;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2041,240,0 chrV 375890 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=5.2857;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.59;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2264,249,0 chrV 375893 . T C 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.110;DP=116;Dels=0.00;FS=2.984;HaplotypeScore=1.9733;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=1.856;QD=18.64;ReadPosRankSum=2.216;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2195,252,0 chrV 375938 . T C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=134;Dels=0.00;FS=3.044;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.028;QD=19.34;ReadPosRankSum=2.412;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2624,306,0 chrV 376001 . G T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.66;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3603,417,0 chrV 376050 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.53;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3717,426,0 chrV 376137 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.73;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4723,531,0 chrV 376204 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.26;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3243,372,0 chrV 376275 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.84;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3974,438,0 chrV 376307 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=5.344;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.039;QD=20.84;ReadPosRankSum=1.674;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3731,435,0 chrV 376468 . A C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.000;QD=20.59;ReadPosRankSum=1.704;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2565,294,0 chrV 376801 . T C 2709 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.33;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2742,318,0 chrV 376886 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.88;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4092,468,0 chrV 377067 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.12;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3274,378,0 chrV 377102 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=185;Dels=0.00;FS=3.015;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.327;QD=22.19;ReadPosRankSum=2.423;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4106,471,0 chrV 377190 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.7837;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.443;QD=21.20;ReadPosRankSum=1.674;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3859,450,0 chrV 377281 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.9682;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.09;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3901,432,0 chrV 377999 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=189;Dels=0.00;FS=5.252;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.152;QD=19.92;ReadPosRankSum=3.386;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:3764,420,0 chrV 378036 . A C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.20;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3695,429,0 chrV 378046 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.7398;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.67;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4014,450,0 chrV 378140 . A T 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.313;QD=23.72;ReadPosRankSum=1.684;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3416,369,0 chrV 378167 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=3.036;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=1.124;QD=22.72;ReadPosRankSum=2.417;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3453,405,0 chrV 378269 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.69;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3648,402,0 chrV 378362 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.17;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3869,435,0 chrV 378394 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.161;DP=162;Dels=0.00;FS=3.037;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.721;QD=19.44;ReadPosRankSum=1.517;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3182,336,0 chrV 378395 . A C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.893;QD=19.25;ReadPosRankSum=1.711;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3151,360,0 chrV 378586 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.80;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3066,342,0 chrV 379043 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.346;QD=23.95;ReadPosRankSum=1.714;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4574,525,0 chrV 379332 . C A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.34;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4960,552,0 chrV 379893 . G A 5125.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.8547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.30;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5125,558,0 chrV 379941 . C A 5004.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.6561;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.54;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5004,549,0 chrV 379980 . G A 5730.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=10.1799;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.21;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5730,639,0 chrV 380064 . C T 4602.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.4390;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.01;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4602,510,0 chrV 380502 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.58;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4227,465,0 chrV 381359 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=160;Dels=0.00;FS=4.325;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.033;QD=22.16;ReadPosRankSum=1.710;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3546,405,0 chrV 381575 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3654;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.62;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3590,411,0 chrV 381719 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.164;QD=22.85;ReadPosRankSum=1.685;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3382,387,0 chrV 381852 . T G 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.008;QD=23.25;ReadPosRankSum=2.387;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3651,414,0 chrV 382325 . G A 271 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=8.74;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:36:304,36,0 chrV 382369 . C T 773 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.85;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:806,93,0 chrV 382470 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.95;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:977,111,0 chrV 382516 . T C 407 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=53.5515;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=12.33;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:1,30:33:51:440,51,0 chrV 382621 . C A 422.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;DP=69;Dels=0.00;FS=5.899;HaplotypeScore=4.6227;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-1.799;QD=6.12;ReadPosRankSum=-2.112;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:37,32:69:99:452,0,693 chrV 382763 . A T 1969 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.0495;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.63;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2002,222,0 chrV 383393 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3164,348,0 chrV 383480 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.30;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3332,363,0 chrV 383543 . T G 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=112;Dels=0.00;FS=7.231;HaplotypeScore=12.0109;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.219;QD=18.63;ReadPosRankSum=2.406;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2120,249,0 chrV 383774 . T C 2539 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.81;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2572,297,0 chrV 383903 . G A 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=3.659;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.429;QD=20.34;ReadPosRankSum=-1.707;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2820,299,0 chrV 383986 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.607;QD=21.78;ReadPosRankSum=1.643;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2581,297,0 chrV 384035 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.215;DP=104;Dels=0.00;FS=8.505;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.164;QD=20.92;ReadPosRankSum=3.370;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:4,98:104:99:2209,255,0 chrV 384158 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2020,225,0 chrV 384413 . T A 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.159;QD=23.51;ReadPosRankSum=1.680;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3160,348,0 chrV 384497 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.01;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3158,360,0 chrV 384861 . G A 3064 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6379;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.13;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3097,348,0 chrV 385085 . T C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=3.599;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-1.195;QD=21.46;ReadPosRankSum=1.683;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1578,180,0 chrV 385325 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.16;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2889,318,0 chrV 385333 . A T 2870 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.79;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2903,318,0 chrV 385358 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=168;Dels=0.00;FS=3.021;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.212;QD=19.79;ReadPosRankSum=2.406;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3325,390,0 chrV 385956 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.67;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3166,351,0 chrV 386134 . T A 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=3.660;HaplotypeScore=10.5907;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.203;QD=16.15;ReadPosRankSum=1.636;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1196,138,0 chrV 386230 . A G 2539 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.08;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2572,294,0 chrV 386408 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.6805;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.69;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1957,219,0 chrV 386462 . A G 1754 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=17.03;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1787,210,0 chrV 386495 . A T 1583 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;QD=17.02;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1616,183,0 chrV 386503 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=16.52;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1668,183,0 chrV 386508 . C T 1572 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=15.56;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1605,177,0 chrV 386529 . C A 1975 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.32;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2008,222,0 chrV 386623 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.34;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2613,282,0 chrV 386647 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.02;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1905,216,0 chrV 386670 . A G 1540 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=18.55;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1573,180,0 chrV 386692 . C T 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9951;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=0.796;QD=17.78;ReadPosRankSum=1.451;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1349,156,0 chrV 386749 . A G 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.456;QD=18.99;ReadPosRankSum=1.671;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2198,236,0 chrV 386824 . A G 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;DP=104;Dels=0.00;FS=2.599;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.272;QD=18.67;ReadPosRankSum=2.933;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1975,228,0 chrV 386884 . A T 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=6.299;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.493;QD=24.25;ReadPosRankSum=1.708;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3516,390,0 chrV 386965 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.80;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3769,426,0 chrV 387052 . T G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.68;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3357,375,0 chrV 387086 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.16;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4397,474,0 chrV 387130 . C A 4505.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.10;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4505,510,0 chrV 387188 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3556,408,0 chrV 387695 . T A 1957 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1990,219,0 chrV 387886 . T C 1005 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1038,120,0 chrV 388012 . T C 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.385;QD=23.33;ReadPosRankSum=2.328;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1923,222,0 chrV 388541 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.25;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3995,444,0 chrV 388556 . C G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.55;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,191:196:99:3831,441,0 chrV 388609 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=187;Dels=0.00;FS=10.831;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.898;QD=19.84;ReadPosRankSum=2.963;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:3710,438,0 chrV 388646 . A T 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=226;Dels=0.00;FS=4.733;HaplotypeScore=20.5264;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.031;QD=23.42;ReadPosRankSum=1.625;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5294,597,0 chrV 388982 . G A 4219.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.97;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4219,459,0 chrV 389531 . A G 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=3.640;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.524;QD=20.54;ReadPosRankSum=1.684;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4417,504,0 chrV 389540 . A G 4018.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=19.41;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4018,459,0 chrV 389561 . G C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=17.94;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3336,384,0 chrV 389576 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=15.69;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:2858,333,0 chrV 389822 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.14;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,182:187:99:4141,468,0 chrV 389989 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.45;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4131,456,0 chrV 390061 . G T 2609 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.92;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2642,288,0 chrV 390093 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.61;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2882,315,0 chrV 390133 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.646;QD=21.25;ReadPosRankSum=1.675;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2604,297,0 chrV 390242 . A C 1153 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.21;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1186,135,0 chrV 390437 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.66;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1537,171,0 chrV 390667 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.328;QD=22.84;ReadPosRankSum=2.382;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3334,381,0 chrV 390851 . C A 6022.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=23.80;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:6022,657,0 chrV 391199 . A G 6007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=266;Dels=0.00;FS=3.144;HaplotypeScore=15.8544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.118;QD=22.58;ReadPosRankSum=1.719;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:1,263:266:99:6007,690,0 chrV 391292 . C T 5632.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.59;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5632,621,0 chrV 391523 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=18.3831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4351,492,0 chrV 391589 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.28;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3130,342,0 chrV 391709 . A G 3941.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.63;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3941,450,0 chrV 391914 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=162;Dels=0.00;FS=6.490;HaplotypeScore=11.8106;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.387;QD=19.79;ReadPosRankSum=2.419;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3239,372,0 chrV 392090 . A G 3215 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.85;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3248,366,0 chrV 392199 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.10;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3735,414,0 chrV 392252 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=175;Dels=0.00;FS=3.893;HaplotypeScore=11.0065;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.657;QD=20.87;ReadPosRankSum=1.672;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3653,395,0 chrV 392281 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.0356;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.61;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3549,387,0 chrV 392305 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.70;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3118,357,0 chrV 392531 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.49;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2828,309,0 chrV 392813 . T C 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=78;Dels=0.00;FS=2.963;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.205;QD=23.21;ReadPosRankSum=2.387;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1843,210,0 chrV 393265 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.87;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3034,345,0 chrV 393689 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.53;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2640,300,0 chrV 393855 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=112;Dels=0.00;FS=6.379;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.285;QD=23.97;ReadPosRankSum=2.318;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2718,306,0 chrV 393902 . A G 1692 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.86;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1725,195,0 chrV 393964 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3162;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.89;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1624,192,0 chrV 394021 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.86;MQ0=0;QD=22.43;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2411,264,0 chrV 394357 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.43;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3514,414,0 chrV 394655 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.57;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3347,381,0 chrV 394827 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.785;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.528;QD=24.18;ReadPosRankSum=1.709;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3699,423,0 chrV 394875 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=4.332;HaplotypeScore=7.4863;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.044;QD=23.48;ReadPosRankSum=1.708;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3311,375,0 chrV 394983 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.09;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2266,255,0 chrV 395011 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.89;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2460,273,0 chrV 395075 . A G 2059 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.40;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2092,240,0 chrV 395227 . C G 1511 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=15.58;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1544,177,0 chrV 395254 . A T 1985 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.46;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2018,225,0 chrV 395447 . C T 5474.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.5316;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.33;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5474,594,0 chrV 395734 . C T 6736.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=12.6845;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.87;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:6736,747,0 chrV 395859 . T A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.43;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4585,510,0 chrV 395956 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.66;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3747,423,0 chrV 396002 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.77;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3212,366,0 chrV 396138 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.59;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2729,294,0 chrV 396145 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.42;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2612,285,0 chrV 396195 . G T 2239 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.97;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2272,249,0 chrV 396210 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.3770;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.42;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2340,264,0 chrV 396320 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.08;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2756,306,0 chrV 396364 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7398;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.38;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2768,303,0 chrV 396428 . A T 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=104;Dels=0.00;FS=12.656;HaplotypeScore=8.6312;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.855;QD=21.16;ReadPosRankSum=2.894;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2234,249,0 chrV 396464 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.54;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2552,285,0 chrV 396494 . G C 2317 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.17;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2350,270,0 chrV 397051 . C A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.54;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3288,360,0 chrV 397105 . T G 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.774;HaplotypeScore=7.4996;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.726;QD=23.07;ReadPosRankSum=1.665;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3622,426,0 chrV 397401 . A G 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.647;HaplotypeScore=10.1835;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.338;QD=22.61;ReadPosRankSum=1.653;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3979,456,0 chrV 397753 . T G 1826 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.41;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1859,213,0 chrV 397892 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3081,339,0 chrV 398005 . T C 5589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.6578;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.238;QD=23.48;ReadPosRankSum=2.429;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:5589,645,0 chrV 398138 . T C 5811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=261;Dels=0.00;FS=7.140;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.240;QD=22.26;ReadPosRankSum=2.384;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:5811,657,0 chrV 398201 . C T 5633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=22.2525;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.093;QD=19.90;ReadPosRankSum=-1.422;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:1,278:283:99:5633,627,0 chrV 398340 . A T 6010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=250;Dels=0.00;FS=10.644;HaplotypeScore=18.9592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.113;QD=24.04;ReadPosRankSum=2.956;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:3,247:250:99:6010,651,0 chrV 398663 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=169;Dels=0.00;FS=7.972;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=2.317;QD=21.37;ReadPosRankSum=2.361;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3611,417,0 chrV 398920 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2958,321,0 chrV 398975 . T G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=136;Dels=0.00;FS=6.519;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.137;QD=21.52;ReadPosRankSum=2.395;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2960,339,0 chrV 399151 . A T 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.835;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.273;QD=23.27;ReadPosRankSum=1.654;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3128,354,0 chrV 400005 . A G 7527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.434;DP=318;Dels=0.00;FS=6.117;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.120;QD=23.67;ReadPosRankSum=2.395;SB=-3.959e+03 GT:AD:DP:GQ:PL 1/1:2,315:318:99:7527,849,0 chrV 400033 . C T 7485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.118;DP=339;Dels=0.00;FS=3.872;HaplotypeScore=12.0577;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.669;QD=22.08;ReadPosRankSum=1.620;SB=-3.533e+03 GT:AD:DP:GQ:PL 1/1:1,338:339:99:7485,814,0 chrV 400481 . T C 5584.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=24.7682;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.64;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,252:258:99:5584,633,0 chrV 400856 . C T 4830.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=22.6964;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.00;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4830,525,0 chrV 400890 . G A 5516.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=18.9522;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.63;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5516,615,0 chrV 401320 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.91;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4272,474,0 chrV 401545 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.9978;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.26;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4280,489,0 chrV 401662 . C T 2920 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.64;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2953,327,0 chrV 402039 . T A 561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.619;QD=20.04;ReadPosRankSum=1.609;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:69:594,69,0 chrV 402074 . G T 1166 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1199,132,0 chrV 402168 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.31;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2659,297,0 chrV 402191 . A G 2579 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.86;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2612,303,0 chrV 402321 . T C 4490.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4490,513,0 chrV 402491 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=178;Dels=0.00;FS=11.363;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.181;QD=22.57;ReadPosRankSum=2.961;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4017,471,0 chrV 402722 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.6793;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.70;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2413,270,0 chrV 402763 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.99;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2048,231,0 chrV 402995 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.48;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1343,153,0 chrV 403012 . C A 1528 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.22;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1561,180,0 chrV 403054 . A G 2416 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.5514;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.64;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2449,291,0 chrV 403078 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.10;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3271,354,0 chrV 403557 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.79;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3661,426,0 chrV 403765 . G T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.3123;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.77;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3448,390,0 chrV 403778 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=156;Dels=0.00;FS=8.893;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.181;QD=18.80;ReadPosRankSum=2.402;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:2966,333,0 chrV 403825 . A G 2723 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8075;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.18;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2756,318,0 chrV 404065 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=8.8096;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.35;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2873,321,0 chrV 404317 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=3.873;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.259;QD=21.91;ReadPosRankSum=1.689;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3528,399,0 chrV 404530 . A T 1643 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=14.80;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1676,192,0 chrV 404541 . G A 1861 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=15.25;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:1894,216,0 chrV 404924 . T G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3471,399,0 chrV 405076 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.1093;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.86;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3183,354,0 chrV 405961 . G A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.92;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4687,519,0 chrV 405965 . C T 4793.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.57;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4793,522,0 chrV 406354 . C T 2392 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.4191;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.62;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2425,270,0 chrV 406631 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1796,204,0 chrV 406750 . C T 1083 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.47;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1116,126,0 chrV 406753 . G A 1113 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.24;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1146,126,0 chrV 406754 . G A 1093 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.87;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1126,123,0 chrV 406874 . A G 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=6.598;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.607;QD=21.75;ReadPosRankSum=2.360;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1229,141,0 chrV 406935 . G T 1094 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.33;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1127,123,0 chrV 407018 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=23.93;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1708,189,0 chrV 407153 . T A 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2575;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.866;QD=22.46;ReadPosRankSum=2.320;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1740,195,0 chrV 407199 . T C 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=104;Dels=0.00;FS=2.436;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.674;QD=18.71;ReadPosRankSum=3.098;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:4,99:104:99:1979,228,0 chrV 407205 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.850;DP=110;Dels=0.00;FS=4.714;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.467;QD=18.22;ReadPosRankSum=4.074;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:6,104:110:99:2037,216,0 chrV 407293 . T A 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.639;QD=23.13;ReadPosRankSum=1.662;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3447,393,0 chrV 407419 . T C 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=191;Dels=0.00;FS=5.664;HaplotypeScore=13.7126;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.342;QD=22.84;ReadPosRankSum=2.963;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4363,501,0 chrV 407587 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.7444;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.62;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3767,423,0 chrV 407588 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=192;Dels=0.00;FS=5.597;HaplotypeScore=7.7444;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.471;QD=18.76;ReadPosRankSum=2.911;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3601,417,0 chrV 407924 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.59;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4269,474,0 chrV 407957 . G T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3861,426,0 chrV 408252 . A T 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.967;QD=23.20;ReadPosRankSum=1.692;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3991,456,0 chrV 408293 . T A 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=148;Dels=0.00;FS=8.490;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.121;QD=21.14;ReadPosRankSum=2.367;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3161,354,0 chrV 408422 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=135;Dels=0.00;FS=3.757;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.638;QD=21.69;ReadPosRankSum=1.680;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2961,345,0 chrV 408467 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.96;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2765,309,0 chrV 408982 . T C 2562 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.67;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2595,294,0 chrV 409103 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.23;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3145,357,0 chrV 409168 . T G 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=2.745;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=1.237;QD=21.58;ReadPosRankSum=2.417;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3280,369,0 chrV 409183 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.39;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3220,357,0 chrV 409209 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.21;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3004,345,0 chrV 409394 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=162;Dels=0.00;FS=2.540;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.285;QD=21.19;ReadPosRankSum=2.880;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:3,156:162:99:3433,390,0 chrV 409516 . G A 2400 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=17.02;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2433,267,0 chrV 409528 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=5.085;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=-1.437;QD=14.82;ReadPosRankSum=1.678;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:1960,225,0 chrV 409544 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=15.28;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1913,210,0 chrV 409892 . G C 3204 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3237,372,0 chrV 410293 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.87;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3270,351,0 chrV 410380 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=163;Dels=0.00;FS=12.727;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.056;QD=19.07;ReadPosRankSum=2.908;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3142,363,0 chrV 410473 . G A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4308,492,0 chrV 410947 . G A 6725.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=15.2842;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.34;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6725,744,0 chrV 412273 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.80;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3579,399,0 chrV 412852 . G A 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.675;QD=20.72;ReadPosRankSum=1.270;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1276,138,0 chrV 412892 . A G 1244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.162;QD=19.44;ReadPosRankSum=1.678;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1277,147,0 chrV 412969 . T G 363 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.15;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:45:396,45,0 chrV 413111 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.02;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1282,147,0 chrV 413129 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=25.02;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1209,132,0 chrV 413160 . G A 712 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.25;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:745,81,0 chrV 413233 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.70;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1682,186,0 chrV 413281 . T A 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=104;Dels=0.00;FS=7.139;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.793;QD=21.86;ReadPosRankSum=2.402;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2306,258,0 chrV 414051 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.351;QD=21.27;ReadPosRankSum=1.690;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3509,411,0 chrV 414096 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3427,378,0 chrV 414190 . T A 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.140;QD=22.33;ReadPosRankSum=1.622;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3528,387,0 chrV 414642 . T C 3735.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.20;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3735,429,0 chrV 414720 . C T 4599.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.2780;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.59;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4599,519,0 chrV 414734 . A G 4831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=222;Dels=0.00;FS=4.523;HaplotypeScore=6.1802;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.933;QD=21.76;ReadPosRankSum=1.716;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4831,540,0 chrV 414780 . T C 4630.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.58;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4630,528,0 chrV 415070 . G A 6062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=14.8156;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.577;QD=24.06;ReadPosRankSum=-0.811;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:6062,669,0 chrV 415310 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4566,539,0 chrV 415396 . A C 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.064;DP=134;Dels=0.00;FS=2.592;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.358;QD=20.88;ReadPosRankSum=1.918;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2831,314,0 chrV 415411 . C A 2557 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.85;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2590,288,0 chrV 415657 . G T 1560 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.37;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1593,177,0 chrV 415894 . A C 2684 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.18;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2717,312,0 chrV 416792 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3344,369,0 chrV 417137 . C G 1836 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1869,213,0 chrV 417320 . A G 2686 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4133;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.02;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2719,321,0 chrV 417388 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.10;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2574,285,0 chrV 417511 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.59;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3998,435,0 chrV 417748 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.53;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2904,318,0 chrV 417790 . A G 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=22.11;ReadPosRankSum=1.696;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2178,249,0 chrV 418504 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.39;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1950,222,0 chrV 418513 . A T 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.018;QD=21.09;ReadPosRankSum=1.661;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2079,228,0 chrV 418792 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.78;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2926,318,0 chrV 418874 . G A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3819,423,0 chrV 419038 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.54;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3813,441,0 chrV 419228 . G C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.83;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3798,435,0 chrV 419275 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.80;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3968,465,0 chrV 419536 . T G 2583 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.89;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2616,300,0 chrV 419568 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.69;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2052,228,0 chrV 419631 . T G 1539 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=14.12;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1572,177,0 chrV 419815 . A T 2482 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.40;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2515,279,0 chrV 419827 . T A 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.341;QD=19.78;ReadPosRankSum=1.704;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2486,276,0 chrV 420040 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.639;QD=21.41;ReadPosRankSum=1.709;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,148:153:99:3276,375,0 chrV 420266 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.39;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3976,453,0 chrV 420279 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.92;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3566,411,0 chrV 420292 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.39;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3311,381,0 chrV 420376 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.3339;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.468;QD=21.61;ReadPosRankSum=1.666;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4538,531,0 chrV 420432 . A G 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=221;Dels=0.00;FS=5.770;HaplotypeScore=18.3700;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.912;QD=20.42;ReadPosRankSum=2.857;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:3,216:221:99:4513,516,0 chrV 420478 . C A 5200.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=23.53;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5200,579,0 chrV 420508 . T A 5448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=0.961;QD=24.76;ReadPosRankSum=1.685;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5448,600,0 chrV 420596 . C A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.7394;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=23.58;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4480,495,0 chrV 420619 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.26;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3963,459,0 chrV 421040 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.44;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1533,171,0 chrV 421052 . A G 1253 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.88;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1286,153,0 chrV 421193 . A G 3160 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.4859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3193,383,0 chrV 421719 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.44;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2479,270,0 chrV 421961 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.50;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2980,342,0 chrV 422000 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.55;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3534,387,0 chrV 422021 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.39;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3853,438,0 chrV 422226 . A C 4778.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.22;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4778,537,0 chrV 422255 . T A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.0141;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.27;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4520,510,0 chrV 422613 . G C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.3813;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.68;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3560,411,0 chrV 422789 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.05;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3704,414,0 chrV 423037 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=20.07;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2160,240,0 chrV 423069 . T A 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.719;QD=20.18;ReadPosRankSum=1.601;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2172,246,0 chrV 423233 . G C 2349 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.79;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2382,276,0 chrV 423827 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.602;QD=22.73;ReadPosRankSum=1.707;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3170,375,0 chrV 424029 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=2.953;HaplotypeScore=6.5363;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.501;QD=21.80;ReadPosRankSum=2.415;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3107,354,0 chrV 424927 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1899,222,0 chrV 425334 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.4653;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.91;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3702,417,0 chrV 425833 . G C 1978 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2011,234,0 chrV 426277 . T A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.07;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3922,432,0 chrV 426333 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.4931;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.156;QD=22.30;ReadPosRankSum=1.670;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3746,432,0 chrV 429823 . A T 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=138;Dels=0.00;FS=3.765;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.251;QD=22.10;ReadPosRankSum=1.682;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3083,348,0 chrV 429972 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3302,363,0 chrV 430033 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.43;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3138,357,0 chrV 430305 . C T 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=4.925;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.286;QD=23.43;ReadPosRankSum=1.341;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2728,306,0 chrV 430576 . T C 852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=86;Dels=0.00;FS=3.064;HaplotypeScore=17.4840;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.157;QD=9.91;ReadPosRankSum=-0.376;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:4,80:86:99:885,105,0 chrV 430620 . T G 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.011;DP=73;Dels=0.00;FS=3.004;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.118;QD=14.99;ReadPosRankSum=2.247;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1127,132,0 chrV 430899 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2254,252,0 chrV 431114 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2542,276,0 chrV 431224 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3410,381,0 chrV 431387 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8211;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.546;QD=22.27;ReadPosRankSum=0.080;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2928,339,0 chrV 431926 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-0.154;QD=20.92;ReadPosRankSum=1.694;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3786,429,0 chrV 431930 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=22.04;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3813,426,0 chrV 432416 . A T 2927 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.8515;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.52;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2960,336,0 chrV 432695 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3316,357,0 chrV 433106 . A C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.217;QD=18.64;ReadPosRankSum=1.685;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1431,171,0 chrV 433179 . T A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DP=23;Dels=0.00;FS=20.656;HaplotypeScore=5.3299;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=-0.245;QD=0.90;ReadPosRankSum=-1.015;SB=-6.226e+01 GT:AD:DP:GQ:PL 1/1:6,17:23:6:52,6,0 chrV 433316 . C G 1041 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.63;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1074,129,0 chrV 433628 . A G 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.126;QD=21.53;ReadPosRankSum=1.708;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3112,357,0 chrV 433760 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.709;QD=24.26;ReadPosRankSum=1.709;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3687,414,0 chrV 433844 . T C 2714 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.00;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2747,327,0 chrV 434403 . A T 931 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=23.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:964,105,0 chrV 434405 . A G 960 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=22.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:43:99:993,114,0 chrV 434454 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=23.00;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1413,162,0 chrV 434528 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=26.12;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1339,141,0 chrV 434623 . T C 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.379;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=0;MQRankSum=1.025;QD=20.88;ReadPosRankSum=-1.591;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1056,105,0 chrV 434631 . T A 1067 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=1;QD=23.20;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1100,123,0 chrV 434924 . T C 14.23 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.25;MQ0=4;MQRankSum=0.736;QD=2.03;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:5,2:7:16:44,0,16 chrV 434928 . A G 12.32 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.25;MQ0=4;MQRankSum=0.736;QD=1.76;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:5,2:7:16:42,0,16 chrV 434949 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=2;MQRankSum=0.736;QD=4.76;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,2:5:6:55,6,0 chrV 434977 . C A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=2.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:7:6:50,6,0 chrV 434981 . T A 104.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;MQRankSum=1.107;QD=9.48;ReadPosRankSum=1.423;SB=-2.876e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:15:137,15,0 chrV 435085 . T A 1227 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=21.16;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1260,147,0 chrV 435172 . T A 182.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.58;SB=-4.094e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:215,24,0 chrV 435173 . T C 180.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.48;SB=-4.094e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:213,24,0 chrV 435174 . A T 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.75;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:123,15,0 chrV 435180 . T A 142.20 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.45;MQ0=0;MQRankSum=-1.734;QD=7.11;ReadPosRankSum=1.561;SB=-4.201e+00 GT:AD:DP:GQ:PL 0/1:1,19:20:2:171,0,2 chrV 435181 . G A 160.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.45;MQ0=0;MQRankSum=-1.734;QD=8.04;ReadPosRankSum=1.561;SB=-4.773e+00 GT:AD:DP:GQ:PL 0/1:1,19:20:0:189,0,0 chrV 435182 . C T 157.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;MQRankSum=-1.734;QD=7.86;ReadPosRankSum=1.561;SB=-4.134e+00 GT:AD:DP:GQ:PL 1/1:1,19:20:1:186,1,0 chrV 435190 . C G 175.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.933;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=23.8135;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;MQRankSum=-1.733;QD=6.73;ReadPosRankSum=0.667;SB=-3.022e+00 GT:AD:DP:GQ:PL 1/1:1,25:26:3:205,3,0 chrV 435204 . G A 254.05 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=0;MQRankSum=-1.085;QD=6.87;ReadPosRankSum=0.807;SB=-3.038e+00 GT:AD:DP:GQ:PL 0/1:3,34:37:17:284,0,17 chrV 435237 . A T 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=1;MQRankSum=1.357;QD=4.42;ReadPosRankSum=-1.900;SB=-6.451e-03 GT:AD:DP:GQ:PL 0/1:8,42:50:99:251,0,111 chrV 435243 . G T 190.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=1;MQRankSum=1.300;QD=4.13;ReadPosRankSum=-2.615;SB=-6.476e-03 GT:AD:DP:GQ:PL 0/1:8,38:46:99:220,0,104 chrV 435251 . G T 202.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=1;MQRankSum=1.249;QD=4.70;ReadPosRankSum=-4.084;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:8,35:43:99:232,0,108 chrV 435255 . G T 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.800;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=1;MQRankSum=1.189;QD=3.65;ReadPosRankSum=-4.044;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:8,32:40:99:176,0,112 chrV 435256 . C T 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=1;MQRankSum=1.189;QD=3.43;ReadPosRankSum=-3.971;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,32:40:99:167,0,118 chrV 435265 . A C 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.264;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=1;MQRankSum=1.210;QD=2.00;ReadPosRankSum=-2.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,25:35:99:100,0,133 chrV 435270 . G A 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=1;MQRankSum=1.205;QD=2.34;ReadPosRankSum=-3.662;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:8,24:32:98:105,0,98 chrV 435276 . T C 98.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=1;QD=14.04;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:131,15,0 chrV 435373 . T A 94.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=18.85;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:127,15,0 chrV 435529 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=16.16;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1035,120,0 chrV 435566 . C T 611 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;QD=10.53;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:72:644,72,0 chrV 435584 . T C 923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;MQRankSum=-1.413;QD=12.14;ReadPosRankSum=1.322;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:956,111,0 chrV 435591 . C T 975 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;QD=13.54;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1008,111,0 chrV 435597 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=12.18;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:922,102,0 chrV 435665 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=21.96;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2514,276,0 chrV 435844 . A C 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;MQRankSum=1.039;QD=23.28;ReadPosRankSum=1.683;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1686,192,0 chrV 435863 . A T 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;MQRankSum=1.267;QD=24.36;ReadPosRankSum=1.681;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1665,186,0 chrV 435886 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=21.59;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1307,147,0 chrV 435899 . C G 960 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=20.43;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:993,114,0 chrV 435916 . T C 1062 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=21.67;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1095,123,0 chrV 436038 . C G 18.08 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=2;QD=1.81;SB=15.75 GT:AD:DP:GQ:PL 1/1:2,3:10:6:49,6,0 chrV 436043 . T A 16.17 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=23.56;MQ0=3;MQRankSum=-1.589;QD=1.47;ReadPosRankSum=1.589;SB=-6.072e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:16:46,0,16 chrV 436304 . T C 593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.055;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=-1.857;QD=11.86;ReadPosRankSum=2.352;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:75:626,75,0 chrV 436514 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.99;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2140,240,0 chrV 436536 . T G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.643;QD=20.06;ReadPosRankSum=1.311;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2841,324,0 chrV 436674 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.99;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3068,345,0 chrV 436763 . G C 3453.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.57;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3453,402,0 chrV 437266 . T C 1946 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1979,225,0 chrV 437318 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2106,228,0 chrV 437416 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.55;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3698,408,0 chrV 437636 . G T 4955.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.32;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4955,561,0 chrV 437783 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.01;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3676,426,0 chrV 437863 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.9861;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.44;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3455,372,0 chrV 437901 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.53;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3256,360,0 chrV 438038 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.418;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.719;QD=23.95;ReadPosRankSum=1.705;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3146,354,0 chrV 438230 . T A 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=169;Dels=0.00;FS=9.165;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=2.208;QD=23.03;ReadPosRankSum=3.335;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3892,447,0 chrV 438396 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.2575;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=22.43;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3196,348,0 chrV 438514 . G C 373 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=12.03;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:48:406,48,0 chrV 438684 . C A 1520 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=20.82;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1553,171,0 chrV 438685 . T A 1528 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=21.83;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1561,171,0 chrV 438836 . A C 2782 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.24;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2815,327,0 chrV 438849 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-1.505;QD=19.60;ReadPosRankSum=2.361;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2758,312,0 chrV 438865 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.51;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2589,297,0 chrV 438887 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=16.41;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2052,237,0 chrV 438905 . A G 1456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=112;Dels=0.00;FS=3.050;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=-1.452;QD=13.00;ReadPosRankSum=2.405;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:1489,171,0 chrV 438946 . G C 1358 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=12.57;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1391,159,0 chrV 439039 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.49;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3665,399,0 chrV 439206 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.002;QD=21.70;ReadPosRankSum=1.638;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3245,375,0 chrV 439255 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.811;QD=21.86;ReadPosRankSum=1.712;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3782,444,0 chrV 439285 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.65;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3941,441,0 chrV 439545 . A T 4804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=212;Dels=0.00;FS=4.455;HaplotypeScore=13.8436;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.471;QD=22.66;ReadPosRankSum=1.716;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4804,528,0 chrV 439909 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=156;Dels=0.00;FS=7.322;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.230;QD=20.55;ReadPosRankSum=2.402;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3239,369,0 chrV 440398 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.6463;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.10;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3756,420,0 chrV 440923 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=134;Dels=0.00;FS=2.981;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.009;QD=21.98;ReadPosRankSum=2.376;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2978,345,0 chrV 441237 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.25;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2503,288,0 chrV 441329 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2132,234,0 chrV 441415 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.08;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2964,330,0 chrV 441532 . G T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.6705;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.91;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3966,438,0 chrV 441591 . T G 3805.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.34;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3805,432,0 chrV 441625 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.02;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3384,378,0 chrV 441679 . T C 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=8.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.236;QD=20.15;ReadPosRankSum=2.373;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3257,375,0 chrV 441763 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.1148;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.30;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3940,444,0 chrV 441820 . T C 2899 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.72;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2932,336,0 chrV 441832 . C A 2413 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=18.01;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2446,276,0 chrV 441843 . A G 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=128;Dels=0.00;FS=5.987;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.167;QD=16.09;ReadPosRankSum=2.945;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2093,246,0 chrV 441870 . T A 2656 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=18.84;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2689,294,0 chrV 441963 . T C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=123;Dels=0.00;FS=8.243;HaplotypeScore=13.9321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=1;MQRankSum=-0.007;QD=21.58;ReadPosRankSum=3.264;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:4,115:123:99:2687,303,0 chrV 442012 . T C 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=1;MQRankSum=0.445;QD=22.68;ReadPosRankSum=1.685;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3379,396,0 chrV 442069 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=147;Dels=0.00;FS=9.766;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.980;QD=21.96;ReadPosRankSum=2.939;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3261,366,0 chrV 442111 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.17;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3392,378,0 chrV 442510 . A G 4446.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.76;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4446,516,0 chrV 442511 . A T 4853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=241;Dels=0.00;FS=3.328;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.689;QD=20.14;ReadPosRankSum=1.631;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:4853,531,0 chrV 442559 . T G 4486.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.39;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4486,510,0 chrV 442603 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.9295;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.74;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3671,414,0 chrV 442670 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.32;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3825,429,0 chrV 442840 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=92.1636;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.83;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2095,234,0 chrV 442869 . A G 1768 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.43;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1801,207,0 chrV 442900 . A G 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=91;Dels=0.00;FS=3.054;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=0.014;QD=17.22;ReadPosRankSum=2.369;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1600,183,0 chrV 442961 . A G 885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=69;Dels=0.00;FS=2.811;HaplotypeScore=6.6261;MLEAC=2;MLEAF=1.00;MQ=33.73;MQ0=0;MQRankSum=-1.162;QD=12.83;ReadPosRankSum=1.735;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:918,108,0 chrV 442968 . T C 937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7609;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;MQRankSum=0.148;QD=13.39;ReadPosRankSum=1.386;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:970,111,0 chrV 443018 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=15.07;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1284,147,0 chrV 443031 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=15.81;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1472,165,0 chrV 443049 . A C 1541 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=17.51;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1574,180,0 chrV 443133 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=25.76;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2326,261,0 chrV 443176 . A T 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=4.771;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;MQRankSum=-1.582;QD=23.09;ReadPosRankSum=1.682;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1626,177,0 chrV 443177 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=21.68;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1529,177,0 chrV 443290 . T G 2058 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=22.87;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2091,243,0 chrV 443311 . A G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;MQRankSum=-1.215;QD=21.43;ReadPosRankSum=1.681;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1469,171,0 chrV 443323 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=21.90;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1391,159,0 chrV 443413 . A G 418.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.748;DP=181;Dels=0.00;FS=233.415;HaplotypeScore=8.4795;MLEAC=1;MLEAF=0.500;MQ=16.59;MQ0=55;MQRankSum=6.753;QD=2.31;ReadPosRankSum=6.267;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:89,50:181:7:448,0,7 chrV 443414 . A T 411.07 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.489;DP=180;Dels=0.00;FS=336.895;HaplotypeScore=7.6908;MLEAC=1;MLEAF=0.500;MQ=16.50;MQ0=55;MQRankSum=8.691;QD=2.28;ReadPosRankSum=7.567;SB=-3.085e+00 GT:AD:DP:GQ:PL 0/1:130,50:180:15:441,0,15 chrV 443416 . T G 408.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.675;DP=243;Dels=0.00;FS=343.415;HaplotypeScore=7.6908;MLEAC=1;MLEAF=0.500;MQ=14.23;MQ0=115;MQRankSum=8.789;QD=1.68;ReadPosRankSum=6.581;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:193,50:243:7:438,0,7 chrV 449685 . T C 442 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=6.80;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:54:475,54,0 chrV 449759 . A T 833 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=17.00;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:866,96,0 chrV 449760 . T C 794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.069;QD=15.88;ReadPosRankSum=1.594;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:96:827,96,0 chrV 449908 . A G 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=1.054;QD=17.32;ReadPosRankSum=1.696;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,96:100:99:1765,210,0 chrV 450248 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.34;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2956,327,0 chrV 450260 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6734;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.07;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2943,327,0 chrV 450386 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.03;FS=0.000;HaplotypeScore=31.3322;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.74;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2557,291,0 chrV 451138 . A G 2115 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.3756;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.74;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2148,243,0 chrV 451358 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.42;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2791,321,0 chrV 451413 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2810,309,0 chrV 451710 . T C 5643.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.41;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5643,648,0 chrV 452483 . A C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=148;Dels=0.00;FS=3.448;HaplotypeScore=13.0872;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.566;QD=21.09;ReadPosRankSum=1.637;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3155,366,0 chrV 452590 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.96;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2907,339,0 chrV 452629 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.39;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2765,303,0 chrV 452746 . G A 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.705;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.346;QD=23.94;ReadPosRankSum=0.437;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2810,324,0 chrV 452827 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.475;QD=21.95;ReadPosRankSum=1.620;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2755,315,0 chrV 452954 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3434,393,0 chrV 453437 . G C 2293 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2326,267,0 chrV 454403 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4254,498,0 chrV 454697 . A C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=18.3884;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.436;QD=21.13;ReadPosRankSum=1.639;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4014,453,0 chrV 454979 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.463;QD=19.86;ReadPosRankSum=2.397;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1880,213,0 chrV 455182 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1392,159,0 chrV 455275 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.57;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1545,171,0 chrV 455575 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.0860;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.45;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3892,447,0 chrV 455676 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=155;Dels=0.00;FS=2.723;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.620;QD=23.14;ReadPosRankSum=2.306;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3586,411,0 chrV 455960 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.25;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2200,249,0 chrV 456048 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.92;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2577,282,0 chrV 456087 . A G 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.096;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.9730;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.409;QD=18.75;ReadPosRankSum=2.018;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2208,252,0 chrV 456116 . A T 2261 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.8576;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.74;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2294,255,0 chrV 456140 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4149;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.60;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2365,264,0 chrV 456259 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.60;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3125,333,0 chrV 456278 . C A 2693 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4010;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.72;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2726,297,0 chrV 456429 . G T 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7386;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.685;QD=22.14;ReadPosRankSum=0.562;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3321,369,0 chrV 456505 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.59;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2565,282,0 chrV 456519 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.65;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2800,315,0 chrV 456801 . A T 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.088;QD=20.26;ReadPosRankSum=1.705;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2646,300,0 chrV 456960 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4209;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.32;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3778,426,0 chrV 457376 . C G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.9007;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.83;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:3930,441,0 chrV 457524 . T A 4733.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.78;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4733,516,0 chrV 457596 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=204;Dels=0.00;FS=3.781;HaplotypeScore=8.9144;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.101;QD=22.07;ReadPosRankSum=1.664;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4503,513,0 chrV 457651 . C A 4498.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.72;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4498,498,0 chrV 458086 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.02;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3361,369,0 chrV 458181 . C G 4853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.3488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.297;QD=23.11;ReadPosRankSum=0.946;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:4853,558,0 chrV 458352 . A G 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.297;QD=21.03;ReadPosRankSum=1.666;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4417,519,0 chrV 458604 . A T 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.116;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.021;QD=21.28;ReadPosRankSum=1.669;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3532,384,0 chrV 458610 . A G 3187 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=20.69;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3220,369,0 chrV 458619 . G A 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.184;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.970;QD=21.24;ReadPosRankSum=1.118;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3028,303,0 chrV 458640 . T C 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=3.388;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.192;QD=19.47;ReadPosRankSum=1.708;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2837,327,0 chrV 458865 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.3706;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.206;QD=24.43;ReadPosRankSum=0.330;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4105,450,0 chrV 458964 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.55;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3535,399,0 chrV 459039 . C A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.55;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4240,471,0 chrV 459185 . A G 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=147;Dels=0.00;FS=2.894;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.878;QD=20.67;ReadPosRankSum=2.399;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3072,348,0 chrV 459244 . G C 2959 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.9011;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.41;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:2992,345,0 chrV 459496 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.59;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3860,420,0 chrV 459532 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=2.813;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.112;QD=23.14;ReadPosRankSum=2.381;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3332,381,0 chrV 459578 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=129;Dels=0.00;FS=8.577;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.297;QD=23.30;ReadPosRankSum=2.392;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:3039,348,0 chrV 459617 . T A 2800 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.93;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2833,309,0 chrV 459697 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.50;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3737,411,0 chrV 459715 . G T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.45;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3615,402,0 chrV 459740 . C T 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.183;QD=20.39;ReadPosRankSum=-1.565;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2989,339,0 chrV 459829 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6488;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.18;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2316,258,0 chrV 459831 . A G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=122;Dels=0.00;FS=6.128;HaplotypeScore=6.4481;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-1.815;QD=17.15;ReadPosRankSum=2.841;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:3,117:122:99:2125,243,0 chrV 460003 . C G 2592 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.92;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2625,309,0 chrV 460008 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8035;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=18.37;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2715,315,0 chrV 460131 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=198;Dels=0.00;FS=8.781;HaplotypeScore=17.0859;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=2.337;QD=20.13;ReadPosRankSum=2.375;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:3986,465,0 chrV 460182 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.181;QD=19.16;ReadPosRankSum=1.693;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3372,384,0 chrV 460225 . A G 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=152;Dels=0.00;FS=2.566;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.020;QD=20.37;ReadPosRankSum=2.927;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3130,360,0 chrV 460411 . G A 1575 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=61.11;MQ0=0;QD=23.16;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1608,177,0 chrV 461582 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.72;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3833,444,0 chrV 461594 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.277;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.152;QD=19.85;ReadPosRankSum=1.695;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3673,417,0 chrV 462226 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9033;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.13;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2903,330,0 chrV 462614 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=9.732;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.711;QD=23.58;ReadPosRankSum=2.415;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3325,381,0 chrV 462662 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3477,393,0 chrV 462734 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.59;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3137,345,0 chrV 463004 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.20;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2450,279,0 chrV 463157 . G A 5036.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.42;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5036,567,0 chrV 463255 . C G 4145.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=25.9579;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.28;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,208:215:99:4145,497,0 chrV 463589 . C T 5173.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.39;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5173,576,0 chrV 463625 . C T 4973.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.34;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4973,537,0 chrV 464078 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.48;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3417,372,0 chrV 464103 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.7789;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.34;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3977,441,0 chrV 464192 . A G 4908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=221;Dels=0.00;FS=2.974;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.461;QD=22.21;ReadPosRankSum=2.405;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:4908,555,0 chrV 464291 . T C 4828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.491;QD=22.46;ReadPosRankSum=1.700;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4828,552,0 chrV 464494 . G A 5866.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.4328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5866,645,0 chrV 464736 . C T 4277.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.51;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4277,465,0 chrV 464854 . T C 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=5.229;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-0.115;QD=20.02;ReadPosRankSum=1.674;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2435,276,0 chrV 464956 . T C 1844 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.82;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1877,216,0 chrV 464985 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.43;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1340,147,0 chrV 465018 . G A 986 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=6.8084;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=12.48;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1019,111,0 chrV 465206 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.27;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1533,168,0 chrV 465425 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.67;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2980,324,0 chrV 465644 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.9919;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.395;QD=23.24;ReadPosRankSum=1.651;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3997,459,0 chrV 465932 . A G 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.069;QD=20.05;ReadPosRankSum=1.697;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2038,231,0 chrV 465974 . C T 2061 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.65;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2094,225,0 chrV 466823 . G C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.84;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3342,393,0 chrV 466898 . G T 3103 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.85;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3136,351,0 chrV 467203 . G C 3674.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.74;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3674,420,0 chrV 467312 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.0306;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.04;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4452,510,0 chrV 467489 . C T 5172.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.09;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5172,579,0 chrV 467553 . T C 5267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=245;Dels=0.00;FS=3.022;HaplotypeScore=21.6840;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=2.268;QD=21.50;ReadPosRankSum=2.419;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:2,241:245:99:5267,603,0 chrV 467618 . C T 5604.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.06;SB=-3.209e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5604,609,0 chrV 467945 . C G 2408 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.09;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2441,279,0 chrV 467963 . A G 2034 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.41;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2067,240,0 chrV 468178 . A G 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.059;QD=20.74;ReadPosRankSum=1.684;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1547,177,0 chrV 468194 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.42;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1544,177,0 chrV 468234 . G C 1521 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.33;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1554,183,0 chrV 468269 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.17;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1868,204,0 chrV 468281 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=17.58;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1897,210,0 chrV 468382 . G T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.08;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4358,486,0 chrV 468715 . G A 5441.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=24.0053;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.69;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5441,594,0 chrV 468771 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.83;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3820,417,0 chrV 468838 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.514;QD=21.03;ReadPosRankSum=1.708;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3083,351,0 chrV 468941 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;DP=152;Dels=0.00;FS=10.877;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=-0.128;QD=20.56;ReadPosRankSum=4.064;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:6,146:152:99:3158,363,0 chrV 469002 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.2357;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=19.75;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2778,321,0 chrV 469007 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2684;MLEAC=2;MLEAF=1.00;MQ=37.31;MQ0=0;QD=20.86;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2849,321,0 chrV 469111 . A C 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;MQRankSum=-1.471;QD=21.13;ReadPosRankSum=1.667;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1153,129,0 chrV 469112 . T C 1110 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=21.76;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1143,126,0 chrV 469145 . T C 1366 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=0;QD=16.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1399,165,0 chrV 469150 . T G 1469 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=16.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1502,171,0 chrV 469180 . C G 1603 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=16.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1636,189,0 chrV 469187 . G A 1613 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=237.7610;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=17.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1646,183,0 chrV 469292 . G A 731 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=19.76;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:764,84,0 chrV 469297 . A T 856 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=21.95;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:889,96,0 chrV 469325 . G A 647 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=17.97;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:680,78,0 chrV 469408 . C T 342 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=11.03;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:45:375,45,0 chrV 469412 . C T 402 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=0;QD=11.82;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:54:435,54,0 chrV 469422 . T C 470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;MQRankSum=-1.559;QD=11.46;ReadPosRankSum=1.299;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:60:503,60,0 chrV 469424 . T C 436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;MQRankSum=-1.249;QD=10.14;ReadPosRankSum=1.249;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:57:469,57,0 chrV 469975 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.0014;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.90;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2729,297,0 chrV 470253 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.77;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3697,405,0 chrV 470259 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.70;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3605,399,0 chrV 470392 . C T 2118 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.79;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2151,237,0 chrV 470483 . T C 2488 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.85;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2521,291,0 chrV 470583 . T C 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.9412;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.628;QD=22.38;ReadPosRankSum=1.640;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2562,294,0 chrV 471239 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0219;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.59;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2796,309,0 chrV 471353 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8668;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.95;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3688,417,0 chrV 471407 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.1904;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.94;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3532,393,0 chrV 471655 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.86;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3388,366,0 chrV 471690 . T C 3697.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.54;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3697,417,0 chrV 471723 . T C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=175;Dels=0.00;FS=3.680;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-1.415;QD=22.44;ReadPosRankSum=1.692;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3927,450,0 chrV 471759 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0802;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.45;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3558,396,0 chrV 471782 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=20.76;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3633,396,0 chrV 471798 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=17.39;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3094,354,0 chrV 471807 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.29;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3015,342,0 chrV 471885 . A T 5424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=226;Dels=0.00;FS=4.968;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.196;QD=24.00;ReadPosRankSum=1.686;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5424,597,0 chrV 472051 . C T 5998.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.98;SB=-3.362e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:5998,657,0 chrV 472137 . G A 5670.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.0035;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.77;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,270:273:99:5670,642,0 chrV 472195 . T G 6001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.053;DP=294;Dels=0.00;FS=3.207;HaplotypeScore=21.3720;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.011;QD=20.41;ReadPosRankSum=-1.661;SB=-3.484e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6001,678,0 chrV 472245 . A G 4810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=247;Dels=0.00;FS=2.872;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.800;QD=19.47;ReadPosRankSum=2.410;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:4810,558,0 chrV 472448 . A G 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=136;Dels=0.00;FS=2.586;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=-1.052;QD=16.96;ReadPosRankSum=2.948;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2340,267,0 chrV 472453 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=18.44;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2356,255,0 chrV 472464 . G T 2277 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=17.12;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2310,264,0 chrV 472482 . T C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=5.101;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=0.127;QD=16.89;ReadPosRankSum=1.704;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2110,249,0 chrV 472500 . A G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=0.361;QD=18.32;ReadPosRankSum=1.707;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2580,291,0 chrV 472577 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.34;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3478,387,0 chrV 472664 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.43;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3866,420,0 chrV 472738 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.55;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3267,372,0 chrV 472753 . A T 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=3.890;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.892;QD=19.72;ReadPosRankSum=1.609;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3333,369,0 chrV 472756 . A G 3166 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.30;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3199,363,0 chrV 472959 . C T 4620.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.21;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4620,513,0 chrV 473209 . C T 6660.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=24.1514;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.27;SB=-3.510e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:6660,738,0 chrV 473281 . T C 6086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=22.8094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.916;QD=20.49;ReadPosRankSum=1.674;SB=-3.187e+03 GT:AD:DP:GQ:PL 1/1:1,296:297:99:6086,705,0 chrV 473821 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.62;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4237,471,0 chrV 473890 . G C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4322;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.742;QD=14.97;ReadPosRankSum=1.386;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:1,209:213:99:3222,378,0 chrV 473893 . C G 3150 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=14.86;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:3183,363,0 chrV 473950 . C T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.05;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4432,498,0 chrV 474020 . A G 5267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=260;Dels=0.00;FS=4.013;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.317;QD=20.26;ReadPosRankSum=1.705;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:1,256:260:99:5267,612,0 chrV 474031 . C T 5673.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=16.9085;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.33;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:5673,636,0 chrV 474077 . T C 6046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.718;DP=312;Dels=0.00;FS=4.806;HaplotypeScore=28.8276;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.063;QD=19.38;ReadPosRankSum=3.778;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:5,306:312:99:6046,705,0 chrV 474191 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=277;Dels=0.00;FS=9.076;HaplotypeScore=16.4205;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.754;QD=16.44;ReadPosRankSum=3.417;SB=-3.225e+03 GT:AD:DP:GQ:PL 1/1:4,272:277:99:4555,525,0 chrV 474245 . A G 6522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=328;Dels=0.00;FS=5.764;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-0.520;QD=19.88;ReadPosRankSum=2.924;SB=-3.395e+03 GT:AD:DP:GQ:PL 1/1:3,325:328:99:6522,759,0 chrV 474267 . A G 6839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=4.9808;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.371;QD=19.21;ReadPosRankSum=1.722;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:1,354:356:99:6839,789,0 chrV 474268 . T C 7103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=360;Dels=0.00;FS=8.285;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-1.421;QD=19.73;ReadPosRankSum=2.381;SB=-3.567e+03 GT:AD:DP:GQ:PL 1/1:2,358:360:99:7103,798,0 chrV 474470 . A G 6950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=319;Dels=0.00;FS=6.608;HaplotypeScore=18.9509;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.535;QD=21.79;ReadPosRankSum=2.426;SB=-3.583e+03 GT:AD:DP:GQ:PL 1/1:2,313:319:99:6950,780,0 chrV 474506 . C T 6310.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=25.2984;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.76;SB=-3.246e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6310,693,0 chrV 474569 . G A 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=261;Dels=0.00;FS=3.775;HaplotypeScore=19.9150;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.426;QD=19.40;ReadPosRankSum=0.813;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:1,259:261:99:5064,543,0 chrV 474623 . A G 6842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=331;Dels=0.00;FS=9.434;HaplotypeScore=21.4389;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.418;QD=20.67;ReadPosRankSum=2.967;SB=-3.913e+03 GT:AD:DP:GQ:PL 1/1:3,326:331:99:6842,783,0 chrV 474722 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.685;DP=227;Dels=0.00;FS=2.565;HaplotypeScore=19.7162;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.311;QD=16.47;ReadPosRankSum=2.871;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:3738,441,0 chrV 474860 . G A 6036.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=20.2321;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.26;SB=-3.628e+03 GT:AD:DP:GQ:PL 1/1:0,296:298:99:6036,663,0 chrV 475014 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.9643;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.65;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4009,456,0 chrV 475088 . A C 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;DP=271;Dels=0.00;FS=1.974;HaplotypeScore=11.0909;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=0.794;QD=17.44;ReadPosRankSum=3.223;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:4,267:271:99:4726,552,0 chrV 475104 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=17.20;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:4249,474,0 chrV 475107 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=17.14;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4165,462,0 chrV 475151 . G C 2938 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=13.67;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:2971,345,0 chrV 475154 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=14.08;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3003,336,0 chrV 475295 . C G 5162.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=16.2424;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.40;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,247:253:99:5162,600,0 chrV 475308 . T C 4786.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.5694;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=20.63;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4786,552,0 chrV 475496 . T C 5529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=259;Dels=0.00;FS=3.573;HaplotypeScore=18.6915;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.700;QD=21.35;ReadPosRankSum=1.705;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:1,254:259:99:5529,639,0 chrV 475529 . G A 5777.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=31.7857;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.64;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:0,259:267:99:5777,642,0 chrV 475583 . A G 6256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=280;Dels=0.00;FS=3.491;HaplotypeScore=17.5159;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.494;QD=22.34;ReadPosRankSum=1.720;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:1,276:280:99:6256,717,0 chrV 475649 . C T 4559.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.50;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4559,504,0 chrV 475676 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=197;Dels=0.00;FS=5.716;HaplotypeScore=6.6591;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.745;QD=19.55;ReadPosRankSum=2.912;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:3,190:197:99:3852,435,0 chrV 475694 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.6330;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-1.569;QD=18.79;ReadPosRankSum=1.696;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3588,417,0 chrV 475964 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=165;Dels=0.00;FS=3.091;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.924;QD=21.01;ReadPosRankSum=1.690;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3467,396,0 chrV 476027 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=10.120;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.646;QD=18.71;ReadPosRankSum=2.355;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2951,339,0 chrV 476048 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.192;QD=18.54;ReadPosRankSum=2.357;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2999,348,0 chrV 476183 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.343;QD=20.49;ReadPosRankSum=1.693;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1898,219,0 chrV 476227 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.89;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1600,180,0 chrV 476295 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.18;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1702,195,0 chrV 476296 . A T 1703 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.35;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1736,195,0 chrV 476465 . T C 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.771;QD=21.46;ReadPosRankSum=1.703;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2587,297,0 chrV 476681 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=179;Dels=0.00;FS=5.549;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-0.176;QD=22.02;ReadPosRankSum=2.960;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3942,450,0 chrV 476809 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.42;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3096,339,0 chrV 476888 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=18.65;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3223,366,0 chrV 476891 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=4.624;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-1.593;QD=18.98;ReadPosRankSum=1.692;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3303,372,0 chrV 476912 . C A 2974 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.49;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3007,339,0 chrV 477110 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=25.19;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3207,345,0 chrV 477476 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.4319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3057,345,0 chrV 477953 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.82;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3400,375,0 chrV 477976 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.55;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3579,405,0 chrV 478420 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.326;QD=22.80;ReadPosRankSum=1.701;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2564,291,0 chrV 478595 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=6.407;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.533;QD=22.66;ReadPosRankSum=2.402;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2390,273,0 chrV 478658 . A G 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.502;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.516;QD=22.83;ReadPosRankSum=1.670;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2613,300,0 chrV 478997 . T G 2057 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2090,240,0 chrV 479237 . T C 2501 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2534,291,0 chrV 479528 . A G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.679;QD=21.66;ReadPosRankSum=1.649;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2740,315,0 chrV 479546 . A G 2837 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.17;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2870,324,0 chrV 479721 . A G 2570 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.60;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2603,306,0 chrV 479743 . G A 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.276;QD=22.14;ReadPosRankSum=1.124;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2557,266,0 chrV 480036 . A G 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=4.688;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.084;QD=22.60;ReadPosRankSum=1.665;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2361,279,0 chrV 480101 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.39;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2386,261,0 chrV 480122 . C T 2494 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.18;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2527,276,0 chrV 480265 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.94;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3153,363,0 chrV 480335 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.24;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2520,288,0 chrV 480365 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=3.036;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.032;QD=22.45;ReadPosRankSum=2.387;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2682,306,0 chrV 480402 . T C 2957 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2990,342,0 chrV 480485 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.58;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3537,405,0 chrV 480557 . C G 2483 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.97;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2516,291,0 chrV 481923 . G A 5129.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.54;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5129,567,0 chrV 482316 . G A 6896.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.72;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:6896,753,0 chrV 483903 . T C 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=194;Dels=0.00;FS=6.712;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.782;QD=21.41;ReadPosRankSum=2.411;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:2,188:194:99:4153,477,0 chrV 485006 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3734,441,0 chrV 485380 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.0882;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.62;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2878,315,0 chrV 486292 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2892,318,0 chrV 486330 . A T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.8518;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.86;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3436,375,0 chrV 486470 . A G 2695 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2728,315,0 chrV 486812 . A G 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.346;QD=21.76;ReadPosRankSum=1.623;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2100,237,0 chrV 486863 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.93;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2708,306,0 chrV 486920 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2712,297,0 chrV 486986 . T A 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=129;Dels=0.00;FS=5.442;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.646;QD=22.68;ReadPosRankSum=2.662;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2959,339,0 chrV 487184 . A G 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.259;QD=21.46;ReadPosRankSum=2.411;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2759,318,0 chrV 487234 . T C 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=3.638;HaplotypeScore=9.5875;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.966;QD=22.12;ReadPosRankSum=1.599;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2334,273,0 chrV 487436 . T G 1125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=72;Dels=0.00;FS=8.301;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;MQRankSum=-2.279;QD=15.62;ReadPosRankSum=2.381;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1158,135,0 chrV 487444 . C T 1179 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=16.15;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1212,138,0 chrV 487469 . A T 31.12 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;DP=92;Dels=0.00;FS=6.331;HaplotypeScore=151.1966;MLEAC=1;MLEAF=0.500;MQ=40.11;MQ0=0;MQRankSum=-1.856;QD=0.34;ReadPosRankSum=-2.916;SB=-1.411e+01 GT:AD:DP:GQ:PL 0/1:85,7:92:13:61,0,13 chrV 487480 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=75.0637;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=14.29;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1505,171,0 chrV 487511 . A G 2843 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.1748;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=18.46;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2876,327,0 chrV 487689 . A C 2201 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=22.23;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2234,249,0 chrV 487792 . G C 2006 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0261;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=20.06;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,96:100:99:2039,234,0 chrV 488195 . G C 377 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=0;QD=4.33;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:48:410,48,0 chrV 488211 . T G 706 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=7.43;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:84:739,84,0 chrV 488214 . A G 688 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;QD=7.32;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:84:721,84,0 chrV 488315 . A G 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=110;Dels=0.00;FS=5.894;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;MQRankSum=0.287;QD=21.06;ReadPosRankSum=2.936;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:3,106:110:99:2350,270,0 chrV 488358 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=4.247;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=1;MQRankSum=-0.607;QD=22.14;ReadPosRankSum=1.703;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2646,306,0 chrV 488467 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.46;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2436,276,0 chrV 488899 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=24.31;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1905,210,0 chrV 489026 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.50;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3443,393,0 chrV 489879 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.60;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3639,405,0 chrV 489888 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.03;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3657,402,0 chrV 489897 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.767;DP=162;Dels=0.00;FS=12.255;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.813;QD=19.81;ReadPosRankSum=3.796;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:5,157:162:99:3243,363,0 chrV 490102 . G A 5343.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.3736;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.81;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5343,621,0 chrV 490291 . G A 5600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=351;Dels=0.00;FS=3.266;HaplotypeScore=4.7845;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=1.554;QD=15.95;ReadPosRankSum=1.207;SB=-4.378e+03 GT:AD:DP:GQ:PL 1/1:2,349:351:99:5600,624,0 chrV 490294 . A G 5691.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=364;Dels=0.00;FS=3.220;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=1.243;QD=15.63;ReadPosRankSum=1.722;SB=-4.454e+03 GT:AD:DP:GQ:PL 1/1:1,360:364:99:5691,645,0 chrV 490306 . A G 5953.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=364;Dels=0.00;FS=3.207;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=1.206;QD=16.35;ReadPosRankSum=1.722;SB=-4.485e+03 GT:AD:DP:GQ:PL 1/1:1,361:364:99:5953,672,0 chrV 490456 . A G 6788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=321;Dels=0.00;FS=5.890;HaplotypeScore=21.1533;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-0.972;QD=21.15;ReadPosRankSum=2.903;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:3,318:321:99:6788,791,0 chrV 490516 . A C 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=13.4803;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=1.432;QD=19.35;ReadPosRankSum=1.707;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:1,276:278:99:5380,635,0 chrV 490524 . T C 5441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=275;Dels=0.00;FS=4.233;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=-0.704;QD=19.79;ReadPosRankSum=1.719;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,272:275:99:5441,635,0 chrV 490694 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.67;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3286,375,0 chrV 490700 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=2.575;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.165;QD=20.50;ReadPosRankSum=2.324;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3231,369,0 chrV 490942 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.94;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2809,303,0 chrV 490952 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.14;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2570,282,0 chrV 491135 . G A 4401.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.53;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4401,501,0 chrV 491222 . G A 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.748;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.705;QD=22.78;ReadPosRankSum=-0.812;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2971,336,0 chrV 491262 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=90.0406;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.63;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1849,216,0 chrV 491327 . A G 2969 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6697;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.79;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3002,348,0 chrV 491424 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.97;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2150,234,0 chrV 491522 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.44;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2635,297,0 chrV 491556 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.11;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2531,285,0 chrV 491806 . T C 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.105;QD=20.40;ReadPosRankSum=1.702;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2379,282,0 chrV 491960 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=15.50;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1614,186,0 chrV 492163 . A G 965 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.8776;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.21;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:998,114,0 chrV 492293 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=21.94;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1788,213,0 chrV 492329 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=21.48;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1386,156,0 chrV 498432 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=5.75;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:78,9,0 chrV 498796 . A G 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=0.758;QD=19.70;ReadPosRankSum=1.696;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1924,222,0 chrV 498817 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=16.59;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1974,222,0 chrV 498820 . T C 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=123;Dels=0.00;FS=2.963;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.450;QD=16.37;ReadPosRankSum=2.410;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2046,237,0 chrV 498872 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.0680;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.56;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2994,330,0 chrV 498913 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=8.3907;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.46;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2243,261,0 chrV 498959 . T C 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=85;Dels=0.00;FS=3.384;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.080;QD=15.96;ReadPosRankSum=1.691;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1390,159,0 chrV 499058 . A C 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=141;Dels=0.00;FS=5.610;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=2.389;QD=22.67;ReadPosRankSum=2.950;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3229,372,0 chrV 499353 . T G 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.051;DP=225;Dels=0.00;FS=10.570;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.235;QD=22.28;ReadPosRankSum=4.102;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:6,219:225:99:5014,570,0 chrV 499401 . A T 6319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=278;Dels=0.00;FS=4.528;HaplotypeScore=17.2234;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.445;QD=22.73;ReadPosRankSum=1.682;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:1,277:278:99:6319,693,0 chrV 499569 . T C 5270.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=8.7549;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.67;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5270,594,0 chrV 499617 . A G 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=250;Dels=0.00;FS=2.524;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.273;QD=17.91;ReadPosRankSum=2.964;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:3,247:250:99:4478,519,0 chrV 499623 . T C 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=256;Dels=0.00;FS=5.449;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.961;QD=17.13;ReadPosRankSum=1.719;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:4386,495,0 chrV 499635 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=259;Dels=0.00;FS=2.488;HaplotypeScore=5.5911;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.360;QD=15.70;ReadPosRankSum=2.911;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:3,256:259:99:4066,474,0 chrV 499817 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.762;QD=22.55;ReadPosRankSum=1.709;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3383,384,0 chrV 499876 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.515;QD=21.71;ReadPosRankSum=1.709;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3246,372,0 chrV 499930 . T A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.33;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3618,408,0 chrV 500567 . G T 1561 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1594,180,0 chrV 500606 . T A 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.451;DP=123;Dels=0.00;FS=2.539;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.025;QD=21.63;ReadPosRankSum=2.894;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2694,306,0 chrV 501719 . A T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.5707;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.91;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4272,486,0 chrV 502169 . T G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=17.4752;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.51;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3377,384,0 chrV 502228 . C A 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=8.9866;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.381;QD=23.03;ReadPosRankSum=0.577;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3685,405,0 chrV 502377 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=6.053;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.786;QD=22.80;ReadPosRankSum=2.323;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3156,363,0 chrV 502533 . T C 3098 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=17.9550;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.52;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3131,363,0 chrV 502911 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=3.736;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.400;QD=21.92;ReadPosRankSum=1.710;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3419,405,0 chrV 502995 . T A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=142.3319;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.89;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3617,399,0 chrV 503028 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.67;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3555,417,0 chrV 503228 . C T 5170.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.2092;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.18;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5170,573,0 chrV 503767 . T C 3076 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.2933;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.51;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3109,363,0 chrV 504064 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.25;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3929,444,0 chrV 504324 . T C 2813 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.75;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2846,336,0 chrV 504333 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.68;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2906,321,0 chrV 504481 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.43;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4373,474,0 chrV 505113 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.09;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3579,402,0 chrV 505198 . G A 2446 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.67;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2479,270,0 chrV 505207 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.72;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2596,297,0 chrV 505386 . C A 4562.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.93;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4562,495,0 chrV 505472 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.34;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3184,354,0 chrV 505580 . T C 4650.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4650,551,0 chrV 505622 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.40;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3346,393,0 chrV 506069 . C T 6860.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=21.9516;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.41;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6860,759,0 chrV 506534 . A G 3881.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.93;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3881,447,0 chrV 506573 . T C 4340.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.4351;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4340,504,0 chrV 506669 . A G 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.212;QD=21.21;ReadPosRankSum=1.707;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3066,348,0 chrV 506678 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.07;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3067,351,0 chrV 507153 . C A 3204 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.10;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3237,360,0 chrV 508179 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-0.754;QD=19.56;ReadPosRankSum=1.690;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3221,369,0 chrV 508181 . A C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.086;QD=18.64;ReadPosRankSum=1.711;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3053,360,0 chrV 508274 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=144;Dels=0.00;FS=11.101;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.881;QD=20.97;ReadPosRankSum=2.909;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3052,354,0 chrV 508409 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.29;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2908,327,0 chrV 508586 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2891,321,0 chrV 508632 . C G 2423 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2456,279,0 chrV 508859 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.34;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2602,300,0 chrV 508911 . A G 3093 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.26;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3126,360,0 chrV 509075 . T C 2641 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.16;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2674,303,0 chrV 509188 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2736,297,0 chrV 509437 . C A 4771.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4771,546,0 chrV 509583 . A G 4867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.8949;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.286;QD=22.33;ReadPosRankSum=1.700;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4867,561,0 chrV 509654 . G A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=19.4271;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.82;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4015,447,0 chrV 509797 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1771;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.03;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3158,363,0 chrV 509843 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=147;Dels=0.00;FS=2.791;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.704;QD=19.08;ReadPosRankSum=2.382;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:2838,327,0 chrV 509869 . A C 2838 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.57;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2871,327,0 chrV 509902 . G T 2741 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.01;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2774,306,0 chrV 509938 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.49;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2606,300,0 chrV 509962 . A G 2235 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.61;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2268,261,0 chrV 510112 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.95;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2052,231,0 chrV 510191 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.11;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1188,132,0 chrV 510678 . T C 4969.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.0129;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.59;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4969,561,0 chrV 511287 . G A 5322.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5322,585,0 chrV 511356 . C T 4648.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.71;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4648,501,0 chrV 511431 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=175;Dels=0.00;FS=3.324;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.128;QD=21.61;ReadPosRankSum=1.712;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:3782,444,0 chrV 511509 . T C 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=225;Dels=0.00;FS=3.019;HaplotypeScore=9.7519;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.657;QD=22.84;ReadPosRankSum=2.417;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:5138,594,0 chrV 511641 . T A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.4628;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.55;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3943,438,0 chrV 511800 . T C 4458.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.7199;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.08;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4458,519,0 chrV 511824 . C T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.15;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4356,486,0 chrV 512058 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.55;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2705,291,0 chrV 512295 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1725,195,0 chrV 512380 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.80;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2439,267,0 chrV 512467 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2605,291,0 chrV 512578 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.53;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2386,264,0 chrV 512664 . C G 2384 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2417,282,0 chrV 512863 . T C 4818.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.39;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4818,564,0 chrV 513154 . G A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3821,432,0 chrV 513424 . A T 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=134;Dels=0.00;FS=4.369;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.629;QD=21.43;ReadPosRankSum=1.680;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2905,327,0 chrV 513544 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2796,312,0 chrV 513778 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.63;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3394,384,0 chrV 513941 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.8314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3445,381,0 chrV 514150 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.82;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4045,450,0 chrV 514288 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3355,384,0 chrV 514323 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3294,357,0 chrV 514855 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=169;Dels=0.00;FS=3.029;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.342;QD=21.51;ReadPosRankSum=2.391;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3635,408,0 chrV 514940 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=3.651;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.192;QD=22.34;ReadPosRankSum=1.687;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3418,390,0 chrV 515086 . T G 2663 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.57;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2696,309,0 chrV 515252 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.18;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2792,309,0 chrV 515431 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=173;Dels=0.00;FS=2.583;HaplotypeScore=18.1643;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.561;QD=22.09;ReadPosRankSum=2.350;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3821,444,0 chrV 515785 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9857;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.225;QD=22.58;ReadPosRankSum=1.653;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2991,345,0 chrV 515827 . A G 3045 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.72;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3078,345,0 chrV 516553 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.51;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3759,414,0 chrV 516748 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.40;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3574,405,0 chrV 516826 . T A 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=176;Dels=0.00;FS=6.988;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.361;QD=22.27;ReadPosRankSum=2.408;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3920,432,0 chrV 516916 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=8.9446;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.21;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3997,459,0 chrV 516974 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4124,450,0 chrV 517321 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.07;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3151,345,0 chrV 517327 . C G 2742 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.17;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2775,315,0 chrV 517529 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.834;QD=16.80;ReadPosRankSum=2.370;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1595,186,0 chrV 517549 . T C 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.054;QD=18.74;ReadPosRankSum=1.694;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1776,204,0 chrV 517944 . T C 2563 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2596,300,0 chrV 518464 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.68;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3992,435,0 chrV 519506 . G T 3175 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.01;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3208,354,0 chrV 519704 . C A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.78;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4282,468,0 chrV 520849 . A T 213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.042;QD=14.20;ReadPosRankSum=1.504;SB=-8.002e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:27:246,27,0 chrV 520883 . G A 129.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.91;SB=-2.888e+01 GT:AD:DP:GQ:PL 1/1:0,9:10:18:162,18,0 chrV 520915 . A T 404 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.20;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:437,48,0 chrV 520994 . C A 2043 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.85;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2076,243,0 chrV 521007 . T A 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.657;QD=22.14;ReadPosRankSum=2.930;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2247,243,0 chrV 521844 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.40;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2408,270,0 chrV 521857 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.149;QD=21.04;ReadPosRankSum=1.700;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2284,258,0 chrV 521881 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.91;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2479,279,0 chrV 522010 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3459,384,0 chrV 522421 . A G 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=204;Dels=0.00;FS=8.385;HaplotypeScore=13.6711;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.306;QD=22.91;ReadPosRankSum=2.305;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4674,537,0 chrV 522685 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.8715;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.66;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3336,378,0 chrV 522739 . A C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=9.2632;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.35;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3509,414,0 chrV 522899 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.4779;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.39;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1755,210,0 chrV 522900 . C A 1796 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.6893;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.52;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:3,92:97:99:1829,219,0 chrV 523260 . C A 2993 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.38;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3026,336,0 chrV 523683 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2870,324,0 chrV 524394 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.03;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3329,360,0 chrV 524497 . G C 3161 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.39;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3194,372,0 chrV 524520 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9765;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=17.89;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2698,312,0 chrV 525075 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.80;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3762,432,0 chrV 525798 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.09;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2190,249,0 chrV 525834 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2724,306,0 chrV 526150 . C A 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=5.103;HaplotypeScore=16.8174;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.509;QD=24.05;ReadPosRankSum=-0.170;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4954,555,0 chrV 526303 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.17;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4564,519,0 chrV 526682 . G C 2326 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=19.7497;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.49;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2359,273,0 chrV 526712 . A T 2086 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.96;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2119,234,0 chrV 527126 . C G 1386 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.00;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1419,171,0 chrV 527192 . T C 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.457;QD=22.04;ReadPosRankSum=1.704;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2788,321,0 chrV 527321 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.51;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3095,354,0 chrV 527435 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3207,360,0 chrV 527477 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.2335;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2665,291,0 chrV 527534 . A G 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.155;QD=23.34;ReadPosRankSum=1.700;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2554,297,0 chrV 528932 . C T 3203 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.38;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3236,363,0 chrV 529325 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2491,276,0 chrV 529403 . T C 2628 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.19;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2661,306,0 chrV 529484 . G T 1394 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.63;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1427,156,0 chrV 529707 . T G 2681 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.72;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2714,318,0 chrV 530156 . G T 3068 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.45;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3101,351,0 chrV 530258 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.04;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3799,411,0 chrV 530348 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.74;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3548,402,0 chrV 530520 . A G 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=3.158;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-1.578;QD=22.39;ReadPosRankSum=1.713;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4053,474,0 chrV 530754 . G A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.68;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3742,411,0 chrV 530762 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=23.22;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3668,402,0 chrV 531187 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.06;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3595,411,0 chrV 532728 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.83;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3449,399,0 chrV 532763 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.20;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3001,330,0 chrV 532782 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.71;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2899,330,0 chrV 533061 . C A 2959 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.92;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2992,330,0 chrV 533214 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.77;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3962,450,0 chrV 533244 . C A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.5141;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.26;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3809,423,0 chrV 534911 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2620,282,0 chrV 535145 . A T 2096 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2129,243,0 chrV 535342 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.29;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2752,315,0 chrV 535431 . T A 3179 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.20;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3212,354,0 chrV 535583 . A G 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4843;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.546;QD=21.03;ReadPosRankSum=1.139;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3125,360,0 chrV 536075 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=21.55;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3340,369,0 chrV 536455 . T A 4870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=3.990;HaplotypeScore=12.9319;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.500;QD=23.41;ReadPosRankSum=1.649;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4870,543,0 chrV 536698 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.38;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2907,327,0 chrV 536714 . T C 2970 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.92;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3003,342,0 chrV 536997 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.51;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2781,318,0 chrV 537238 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.38;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3316,372,0 chrV 537307 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3038,345,0 chrV 537418 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=187;Dels=0.00;FS=6.082;HaplotypeScore=11.2825;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.210;QD=22.87;ReadPosRankSum=2.909;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4276,489,0 chrV 537745 . A G 2456 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.36;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2489,285,0 chrV 537801 . A C 1957 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.5234;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.51;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1990,228,0 chrV 537913 . G C 3352.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.12;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3352,387,0 chrV 537978 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2676;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.33;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2913,321,0 chrV 538311 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=17.92;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1090,120,0 chrV 538329 . A T 828 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.00;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:861,99,0 chrV 538371 . A T 73.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.25;SB=-2.855e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:106,12,0 chrV 538430 . A G 757 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:90:790,90,0 chrV 538629 . G T 3041 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3074,351,0 chrV 538770 . A T 3193 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3226,351,0 chrV 538885 . G C 3640.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.8315;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.16;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3640,408,0 chrV 539082 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2505,291,0 chrV 539198 . G A 2346 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.23;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2379,261,0 chrV 539229 . C G 2474 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8518;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.89;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2507,288,0 chrV 539346 . A T 2769 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.50;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2802,315,0 chrV 540205 . T C 2701 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.96;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2734,312,0 chrV 540256 . T C 2818 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.42;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2851,324,0 chrV 540509 . A G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=114;Dels=0.00;FS=7.863;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.316;QD=22.10;ReadPosRankSum=2.406;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2552,291,0 chrV 540528 . G T 2612 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.14;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2645,300,0 chrV 540683 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2749,315,0 chrV 540722 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.55;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2576,294,0 chrV 540880 . T C 2292 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.63;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2325,267,0 chrV 541003 . C G 2317 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.07;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2350,267,0 chrV 541065 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.21;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2108,237,0 chrV 541074 . C G 1967 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=18.56;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2000,228,0 chrV 541175 . A T 2365 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.90;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2398,261,0 chrV 541518 . T C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.3257;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.068;QD=15.38;ReadPosRankSum=1.218;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:4,112:116:99:1817,219,0 chrV 541873 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3999,435,0 chrV 541980 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3185,354,0 chrV 542582 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0666;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.551;QD=21.74;ReadPosRankSum=1.687;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3326,387,0 chrV 542681 . C T 2669 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=19.77;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2702,291,0 chrV 542706 . G C 2418 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=16.56;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2451,282,0 chrV 542715 . C G 2131 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=14.30;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2164,249,0 chrV 542721 . T A 2012 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=14.37;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2045,228,0 chrV 542730 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=12.69;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1886,213,0 chrV 542808 . T A 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.061;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=6.1053;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.465;QD=22.24;ReadPosRankSum=2.256;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3146,357,0 chrV 542893 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.5629;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=0.227;QD=22.55;ReadPosRankSum=1.704;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2784,318,0 chrV 542939 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=21.47;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2802,312,0 chrV 542994 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.75;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3063,351,0 chrV 543054 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.468;QD=22.45;ReadPosRankSum=1.706;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2974,339,0 chrV 543081 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.32;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2294,261,0 chrV 543103 . T C 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=3.046;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.859;QD=18.93;ReadPosRankSum=1.648;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2362,264,0 chrV 543192 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2558,291,0 chrV 543765 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2932,321,0 chrV 544042 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.0845;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.67;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2568,294,0 chrV 544296 . A G 5040.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.77;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5040,573,0 chrV 544392 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=151;Dels=0.00;FS=5.851;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.439;QD=22.32;ReadPosRankSum=2.953;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,146:151:99:3370,393,0 chrV 544734 . G C 2997 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.81;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,139:144:99:3030,351,0 chrV 545025 . G T 2909 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.63;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2942,324,0 chrV 545109 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.196;HaplotypeScore=5.0810;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.093;QD=21.96;ReadPosRankSum=1.711;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3667,429,0 chrV 545269 . T C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.905;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.927;QD=17.51;ReadPosRankSum=1.417;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1766,204,0 chrV 545863 . T C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=146;Dels=0.00;FS=12.871;HaplotypeScore=10.1205;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.676;QD=18.75;ReadPosRankSum=2.897;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:2770,327,0 chrV 546069 . A C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.815;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.320;QD=22.45;ReadPosRankSum=1.679;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2951,336,0 chrV 546108 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.7046;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.54;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2806,312,0 chrV 546141 . T A 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.102;QD=20.08;ReadPosRankSum=1.706;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2683,303,0 chrV 546421 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=14.44;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1520,183,0 chrV 546436 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=11.83;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:991,111,0 chrV 546474 . G A 389 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=14.41;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:48:422,48,0 chrV 546545 . T C 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.470;QD=22.76;ReadPosRankSum=2.387;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1808,210,0 chrV 546617 . A G 2548 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.81;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2581,297,0 chrV 546721 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.826;QD=21.90;ReadPosRankSum=1.679;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2880,333,0 chrV 546766 . T G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0806;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.308;QD=22.92;ReadPosRankSum=1.694;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4148,474,0 chrV 547419 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.72;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3182,348,0 chrV 547434 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.35;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2694,297,0 chrV 548061 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.32;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3482,402,0 chrV 548258 . A T 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=96;Dels=0.00;FS=8.844;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.500;QD=23.99;ReadPosRankSum=2.398;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2336,261,0 chrV 548298 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=7.230;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.927;QD=20.71;ReadPosRankSum=2.394;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1876,213,0 chrV 548318 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=19.81;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1677,186,0 chrV 548325 . A G 1530 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.43;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1563,177,0 chrV 548345 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.25;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1657,192,0 chrV 548447 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.5039;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.08;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2639,303,0 chrV 548562 . A T 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=86;Dels=0.00;FS=2.976;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.676;QD=19.65;ReadPosRankSum=2.364;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1723,195,0 chrV 549247 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.44;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3586,408,0 chrV 549289 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9121;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.57;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4030,459,0 chrV 549412 . G A 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.208;QD=19.67;ReadPosRankSum=0.312;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2000,222,0 chrV 549585 . C A 915 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.06;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:948,105,0 chrV 549608 . T C 727 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.77;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:760,90,0 chrV 549874 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.22;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2123,231,0 chrV 549916 . C G 2672 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.55;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2705,312,0 chrV 549929 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.46;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2995,330,0 chrV 550011 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.82;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3034,333,0 chrV 550177 . G T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.05;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3307,378,0 chrV 550210 . A G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.418;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.163;QD=19.95;ReadPosRankSum=1.655;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2726,321,0 chrV 550284 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.16;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2170,246,0 chrV 550341 . T C 2560 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1966;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.65;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2593,291,0 chrV 550381 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.155;QD=23.09;ReadPosRankSum=1.703;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2804,315,0 chrV 550408 . A C 2620 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.48;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2653,303,0 chrV 550834 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2139,231,0 chrV 551094 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=15.25;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1604,180,0 chrV 551130 . T A 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=153;Dels=0.00;FS=4.213;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.328;QD=18.17;ReadPosRankSum=1.709;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2813,306,0 chrV 551262 . C G 3011 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.06;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3044,357,0 chrV 551268 . A G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.01;FS=10.509;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-2.157;QD=20.68;ReadPosRankSum=2.415;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3031,348,0 chrV 551385 . T G 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=186;Dels=0.00;FS=2.993;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.010;QD=23.32;ReadPosRankSum=2.423;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4338,489,0 chrV 551411 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.75;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3741,441,0 chrV 551635 . T A 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=3.010;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.234;QD=21.51;ReadPosRankSum=2.415;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3088,351,0 chrV 551661 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.810;QD=20.41;ReadPosRankSum=1.710;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3217,375,0 chrV 551830 . C T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.97;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3630,408,0 chrV 551994 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2493,285,0 chrV 552089 . C A 2700 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.43;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2733,312,0 chrV 552107 . T C 2941 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.86;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2974,345,0 chrV 552602 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3721,423,0 chrV 552684 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.486;QD=21.43;ReadPosRankSum=1.713;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:3964,450,0 chrV 552710 . C T 4260.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.19;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4260,471,0 chrV 552902 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.10;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3756,429,0 chrV 553016 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5427;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.73;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3501,384,0 chrV 553226 . T C 1929 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.92;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1962,225,0 chrV 553261 . T C 1358 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=20.58;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1391,156,0 chrV 553262 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.78;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1384,156,0 chrV 553559 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.14;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3276,381,0 chrV 553766 . T A 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=173;Dels=0.00;FS=2.818;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.683;QD=23.53;ReadPosRankSum=2.350;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4070,450,0 chrV 553849 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3801,420,0 chrV 554060 . G T 1855 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.57;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1888,213,0 chrV 554157 . C T 1459 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=21.46;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1492,165,0 chrV 554160 . G A 1367 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=20.40;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1400,165,0 chrV 554162 . A G 1339 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=19.99;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1372,162,0 chrV 554188 . C G 790 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=16.46;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:823,96,0 chrV 554200 . C T 676 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=15.72;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:78:709,78,0 chrV 554330 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=19.69;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2868,312,0 chrV 554338 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=19.10;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2726,297,0 chrV 554406 . T G 728 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;MQRankSum=-1.399;QD=6.93;ReadPosRankSum=1.699;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:87:761,87,0 chrV 554409 . G A 686 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=6.53;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:81:719,81,0 chrV 554414 . C T 657 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=6.70;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:75:690,75,0 chrV 554416 . A G 609 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=6.21;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:75:642,75,0 chrV 554422 . C A 701 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=5.75;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:78:734,78,0 chrV 554437 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=8.33;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1291,141,0 chrV 554490 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.35;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2987,330,0 chrV 554720 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.13;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3202,351,0 chrV 554819 . A T 1729 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.58;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1762,195,0 chrV 554822 . A G 1702 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.242;QD=19.79;ReadPosRankSum=1.692;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1735,198,0 chrV 554823 . T C 1723 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=5.245;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.179;QD=19.80;ReadPosRankSum=1.692;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1756,198,0 chrV 554883 . T C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=5.324;HaplotypeScore=8.7731;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-1.732;QD=19.05;ReadPosRankSum=1.619;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1805,204,0 chrV 554931 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=19.56;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1637,189,0 chrV 554949 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=19.80;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1538,171,0 chrV 554955 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.27;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1495,168,0 chrV 554982 . A T 1216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.126;QD=17.62;ReadPosRankSum=1.632;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1249,138,0 chrV 555023 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.03;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1495,165,0 chrV 555065 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.35;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2271,258,0 chrV 555089 . A T 2767 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.20;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2800,309,0 chrV 555106 . T C 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.3172;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.106;QD=20.38;ReadPosRankSum=1.709;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3049,345,0 chrV 555164 . A G 2071 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.66;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2104,249,0 chrV 555177 . T A 1981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=101;Dels=0.00;FS=2.655;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=1.012;QD=19.61;ReadPosRankSum=2.328;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2014,231,0 chrV 555234 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.38;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2470,270,0 chrV 555415 . A T 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=1.093;QD=17.62;ReadPosRankSum=1.626;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1178,129,0 chrV 555444 . T C 1416 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.13;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1449,165,0 chrV 555453 . C A 1579 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.74;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1612,180,0 chrV 555718 . A G 2786 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.41;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2819,321,0 chrV 555951 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.16;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3746,417,0 chrV 555959 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.09;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3712,411,0 chrV 556060 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4166,453,0 chrV 556109 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.77;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3232,378,0 chrV 556342 . C G 2400 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2433,282,0 chrV 556597 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=148;Dels=0.00;FS=2.612;HaplotypeScore=9.9675;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.945;QD=20.44;ReadPosRankSum=2.383;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3058,348,0 chrV 556791 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.5800;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.64;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3679,414,0 chrV 557037 . T C 2291 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.25;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2324,261,0 chrV 557044 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.94;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2293,249,0 chrV 557076 . T C 2786 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.7635;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.64;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2819,327,0 chrV 557148 . A G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=3.032;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.254;QD=21.49;ReadPosRankSum=2.409;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2633,303,0 chrV 557207 . T C 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=98;Dels=0.00;FS=9.442;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.557;QD=20.49;ReadPosRankSum=2.908;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2041,237,0 chrV 557265 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1092;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.27;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2662,291,0 chrV 557316 . A C 2572 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.61;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2605,294,0 chrV 557355 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=123;Dels=0.00;FS=7.035;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.450;QD=21.05;ReadPosRankSum=2.410;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2622,303,0 chrV 557406 . G C 2772 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.5544;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.83;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2805,321,0 chrV 557520 . T G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=156;Dels=0.00;FS=2.585;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.825;QD=22.31;ReadPosRankSum=2.838;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3480,390,0 chrV 557574 . G C 2917 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.45;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2950,342,0 chrV 557616 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.35;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3085,351,0 chrV 557842 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.84;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3230,369,0 chrV 557877 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=151;Dels=0.00;FS=3.038;HaplotypeScore=9.6320;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.554;QD=23.66;ReadPosRankSum=2.352;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3573,402,0 chrV 558441 . T A 2897 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.18;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2930,321,0 chrV 559099 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.3703;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.31;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3574,414,0 chrV 559174 . G A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.5182;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.53;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4607,516,0 chrV 559384 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.27;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3452,381,0 chrV 559558 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.84;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3495,396,0 chrV 559656 . A C 2715 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.72;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2748,318,0 chrV 559696 . T C 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=124;Dels=0.00;FS=7.697;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.010;QD=18.87;ReadPosRankSum=2.410;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2373,273,0 chrV 559831 . T C 2487 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=20.06;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2520,294,0 chrV 559837 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=19.94;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2505,276,0 chrV 559859 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.404;QD=19.29;ReadPosRankSum=1.680;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2599,294,0 chrV 559862 . T C 2505 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=18.56;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2538,288,0 chrV 560011 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.97;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2370,267,0 chrV 560026 . T C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.809;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.152;QD=18.50;ReadPosRankSum=1.704;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2383,267,0 chrV 560290 . A C 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.512;QD=19.25;ReadPosRankSum=1.650;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2459,285,0 chrV 560376 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.540;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.681;QD=22.35;ReadPosRankSum=1.704;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2782,315,0 chrV 560686 . A G 2823 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.02;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2856,327,0 chrV 560689 . A G 2647 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.61;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2680,315,0 chrV 560715 . A G 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.075;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.815;QD=19.93;ReadPosRankSum=1.681;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2763,315,0 chrV 560810 . A C 2977 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.42;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3010,351,0 chrV 560826 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.79;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2882,315,0 chrV 560836 . C T 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3673;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.852;QD=22.46;ReadPosRankSum=1.590;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2773,300,0 chrV 560913 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=126;Dels=0.00;FS=16.026;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=1.371;QD=21.63;ReadPosRankSum=3.388;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2758,315,0 chrV 560938 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=22.96;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2742,306,0 chrV 561056 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=1.241;QD=21.15;ReadPosRankSum=1.674;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2613,300,0 chrV 561062 . C T 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=0.160;QD=21.12;ReadPosRankSum=-0.771;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2546,279,0 chrV 561069 . G C 2443 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=20.19;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2476,279,0 chrV 561108 . T C 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=1.524;QD=18.58;ReadPosRankSum=1.628;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1891,219,0 chrV 561180 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=20.13;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2247,246,0 chrV 561186 . A G 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=2.804;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=-2.276;QD=18.41;ReadPosRankSum=2.363;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2113,249,0 chrV 561205 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=17.77;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2130,234,0 chrV 561211 . G A 1980 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.02;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=17.37;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2013,228,0 chrV 561348 . T A 2236 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=20.33;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2269,249,0 chrV 561353 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=19.26;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2132,243,0 chrV 561364 . T A 1969 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=19.12;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2002,228,0 chrV 561430 . A T 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-0.764;QD=18.26;ReadPosRankSum=1.681;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1275,141,0 chrV 561442 . T C 1254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=4.393;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=0.525;QD=18.72;ReadPosRankSum=1.680;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1287,147,0 chrV 561458 . A C 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=0.427;QD=19.62;ReadPosRankSum=1.682;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1387,159,0 chrV 561468 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=17.92;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1413,162,0 chrV 561532 . T G 1853 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1020;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=21.80;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1886,216,0 chrV 561569 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=19.77;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1773,195,0 chrV 561702 . T A 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=1.358;QD=24.07;ReadPosRankSum=1.685;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1814,198,0 chrV 561720 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=24.95;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1904,210,0 chrV 561724 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=24.00;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1881,207,0 chrV 561734 . C A 1666 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=20.82;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1699,195,0 chrV 561786 . T C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=-0.419;QD=16.46;ReadPosRankSum=1.696;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1597,186,0 chrV 561802 . C A 1621 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=16.54;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1654,180,0 chrV 561809 . T C 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=0.516;QD=15.53;ReadPosRankSum=1.695;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1493,174,0 chrV 561821 . G C 1561 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=17.94;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1594,177,0 chrV 561858 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=18.54;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1776,201,0 chrV 561947 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.84;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2679,291,0 chrV 562065 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.2597;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.17;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2782,309,0 chrV 562113 . C G 3083 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.69;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3116,366,0 chrV 562116 . T A 3139 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.35;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3172,348,0 chrV 562183 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=135;Dels=0.00;FS=2.937;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.792;QD=22.01;ReadPosRankSum=2.395;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3004,342,0 chrV 562315 . T C 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=155;Dels=0.00;FS=3.558;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.527;QD=19.94;ReadPosRankSum=1.709;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,151:155:99:3123,366,0 chrV 562513 . G T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.92;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3804,417,0 chrV 562559 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=163.0071;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.41;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3163,351,0 chrV 562916 . G C 2159 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2192,246,0 chrV 563000 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.18;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1725,189,0 chrV 563066 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.32;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1689,192,0 chrV 563139 . G T 2101 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=23.87;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2134,234,0 chrV 563249 . T G 1821 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=22.21;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1854,216,0 chrV 563275 . A C 1669 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=20.60;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1702,198,0 chrV 563320 . A G 1289 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=15.53;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1322,153,0 chrV 563324 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=15.36;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1308,144,0 chrV 563344 . G A 1126 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=15.42;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1159,123,0 chrV 563348 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=14.83;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1071,120,0 chrV 563414 . C T 897 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=63.7895;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=16.92;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:930,102,0 chrV 563479 . A T 1112 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=17.11;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1145,132,0 chrV 563507 . C T 995 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=19.51;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1028,114,0 chrV 563513 . A G 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;MQRankSum=-1.444;QD=18.15;ReadPosRankSum=1.660;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:904,105,0 chrV 563608 . G A 1033 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=18.45;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1066,123,0 chrV 563620 . T A 998 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=18.83;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1031,114,0 chrV 563642 . T C 1027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;MQRankSum=-0.137;QD=16.05;ReadPosRankSum=2.372;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1060,126,0 chrV 563661 . T A 1240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;MQRankSum=-0.075;QD=17.97;ReadPosRankSum=1.632;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1273,141,0 chrV 563755 . T C 1199 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.04;FS=0.000;HaplotypeScore=9.8644;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=15.78;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1232,141,0 chrV 563807 . A G 2373 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=23.73;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2406,273,0 chrV 563837 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=96.4557;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=20.01;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2274,258,0 chrV 563899 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.02;FS=0.000;HaplotypeScore=19.5811;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=18.64;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2046,234,0 chrV 563908 . T C 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;MQRankSum=-1.119;QD=17.30;ReadPosRankSum=1.701;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1988,234,0 chrV 563929 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.796;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=0.676;QD=18.76;ReadPosRankSum=2.383;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2115,249,0 chrV 563956 . T C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-1.541;QD=19.46;ReadPosRankSum=1.705;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2504,291,0 chrV 564065 . A G 2819 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=7.020;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=-0.706;QD=21.04;ReadPosRankSum=2.303;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2852,327,0 chrV 564072 . A G 2432 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;MQRankSum=-0.127;QD=19.77;ReadPosRankSum=1.450;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2465,282,0 chrV 564074 . T A 2573 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;MQRankSum=0.625;QD=20.75;ReadPosRankSum=2.291;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2606,285,0 chrV 564197 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.2006;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.29;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3162,363,0 chrV 564252 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=20.46;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2304,261,0 chrV 564265 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=18.44;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1748,204,0 chrV 564272 . A G 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;MQRankSum=-1.575;QD=17.62;ReadPosRankSum=1.693;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1584,189,0 chrV 564276 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;QD=18.33;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1518,177,0 chrV 564304 . C A 1126 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=16.56;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1159,132,0 chrV 564311 . A G 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;MQRankSum=-1.462;QD=15.03;ReadPosRankSum=1.678;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:995,117,0 chrV 564316 . C T 1047 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=17.16;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1080,120,0 chrV 564365 . G T 1552 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=18.70;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1585,186,0 chrV 564381 . A G 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;MQRankSum=-1.312;QD=17.44;ReadPosRankSum=2.387;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1393,165,0 chrV 564395 . T G 1380 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=20.00;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1413,168,0 chrV 564397 . C T 1376 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=19.66;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1409,165,0 chrV 564453 . G A 399 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=13.76;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:54:432,54,0 chrV 564478 . G A 239 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;QD=10.39;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:272,33,0 chrV 564489 . T C 239 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=10.86;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:272,33,0 chrV 564502 . T A 168.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=9.34;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:201,24,0 chrV 564507 . T A 214 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=10.70;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:247,30,0 chrV 564576 . A T 64.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;MQRankSum=-1.666;QD=7.17;ReadPosRankSum=1.666;SB=-2.839e+01 GT:AD:DP:GQ:PL 1/1:2,7:9:12:97,12,0 chrV 564577 . G A 66.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=9.50;SB=-2.639e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:99,12,0 chrV 564635 . T C 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=9.93;SB=-5.226e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:102,12,0 chrV 564639 . C T 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=10.07;SB=-5.426e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:103,12,0 chrV 564641 . C T 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=10.36;SB=-5.526e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:105,12,0 chrV 564664 . A G 187.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=15.58;SB=-7.099e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:220,27,0 chrV 564705 . T C 246 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=22.36;SB=-7.498e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:33:279,33,0 chrV 564749 . A C 281 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=21.62;SB=-1.319e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:36:314,36,0 chrV 564791 . A G 213 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.75;SB=-5.100e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:246,30,0 chrV 564841 . G A 207.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=12.94;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:240,27,0 chrV 564850 . T A 196.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=14.00;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:229,24,0 chrV 564865 . A G 175.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=13.46;SB=-2.804e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:24:208,24,0 chrV 564880 . A G 141.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=10.85;SB=-4.607e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:174,21,0 chrV 564904 . A G 221 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=12.28;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,17:18:30:254,30,0 chrV 564935 . A C 351 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=14.04;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:45:384,45,0 chrV 564938 . T C 359 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=14.36;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:45:392,45,0 chrV 564968 . T C 329 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=11.34;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:362,42,0 chrV 564974 . T A 353 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=12.61;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:386,45,0 chrV 565007 . C T 344 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=11.86;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:377,42,0 chrV 565161 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.3339;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.32;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2785,324,0 chrV 565382 . A C 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.646;DP=95;Dels=0.03;FS=7.162;HaplotypeScore=46.4429;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-2.684;QD=19.83;ReadPosRankSum=4.646;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:8,83:92:99:1917,219,0 chrV 565423 . A T 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.376;QD=20.50;ReadPosRankSum=1.579;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1427,159,0 chrV 565448 . A G 1324 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.37;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1357,159,0 chrV 565488 . T C 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.742;QD=18.46;ReadPosRankSum=1.687;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1473,174,0 chrV 565737 . A C 1421 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;QD=15.79;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1454,165,0 chrV 565742 . G A 1257 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=13.66;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1290,147,0 chrV 565749 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=12.68;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1187,138,0 chrV 565763 . G A 1026 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=12.07;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1059,123,0 chrV 565765 . G A 983 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=11.70;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1016,120,0 chrV 565769 . A G 1076 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=11.70;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1109,132,0 chrV 565791 . A G 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;MQRankSum=-0.173;QD=13.59;ReadPosRankSum=1.646;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1134,132,0 chrV 565800 . A G 1396 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=15.86;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1429,165,0 chrV 565834 . T G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=125;Dels=0.00;FS=7.838;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;MQRankSum=0.817;QD=18.99;ReadPosRankSum=2.410;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2407,285,0 chrV 565880 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=22.38;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3334,386,0 chrV 565897 . A G 2607 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;QD=20.05;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2640,326,0 chrV 565903 . A G 2699 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=19.28;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2732,335,0 chrV 565938 . T G 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;MQRankSum=-1.155;QD=16.08;ReadPosRankSum=1.708;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2364,299,0 chrV 565942 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=15.38;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2279,272,0 chrV 565962 . T C 2311 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=14.35;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2344,284,0 chrV 566004 . A G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=156;Dels=0.00;FS=12.126;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;MQRankSum=0.417;QD=8.92;ReadPosRankSum=2.418;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:2,154:156:99:1424,174,0 chrV 566008 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=8.77;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1349,165,0 chrV 566018 . A G 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=5.643;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=0;MQRankSum=1.659;QD=11.11;ReadPosRankSum=1.708;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:1622,192,0 chrV 566041 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=12.63;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:1788,210,0 chrV 566055 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=0;QD=13.82;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2050,251,0 chrV 566067 . A G 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=0;MQRankSum=1.431;QD=13.19;ReadPosRankSum=1.707;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1853,227,0 chrV 566085 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=7.874;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=0;MQRankSum=1.278;QD=14.09;ReadPosRankSum=2.411;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:1836,227,0 chrV 566086 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=0;QD=13.90;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:1868,227,0 chrV 566108 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=0;MQRankSum=-0.577;QD=17.27;ReadPosRankSum=1.667;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2779,350,0 chrV 566136 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=190;Dels=0.00;FS=6.613;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=0;MQRankSum=-1.157;QD=17.65;ReadPosRankSum=2.411;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3354,413,0 chrV 566139 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=199;Dels=0.00;FS=9.707;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;MQRankSum=-0.611;QD=17.15;ReadPosRankSum=2.894;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:3412,416,0 chrV 566161 . A C 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=234;Dels=0.00;FS=6.229;HaplotypeScore=9.4565;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;MQRankSum=0.005;QD=19.99;ReadPosRankSum=2.407;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:4678,545,0 chrV 566265 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=18.72;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2822,318,0 chrV 566278 . A G 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=4.032;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;MQRankSum=0.670;QD=17.24;ReadPosRankSum=1.704;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2171,255,0 chrV 566301 . G T 1747 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=11.27;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:1780,210,0 chrV 566307 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=11.04;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1789,210,0 chrV 566328 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=9.53;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:1739,215,0 chrV 566353 . A G 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=204;Dels=0.00;FS=6.040;HaplotypeScore=1.9733;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;MQRankSum=0.778;QD=10.77;ReadPosRankSum=2.966;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:2230,267,0 chrV 566354 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=11.44;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:2332,267,0 chrV 566370 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=12.66;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:2781,315,0 chrV 566388 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=14.52;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3054,351,0 chrV 566434 . A G 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=166;Dels=0.00;FS=5.387;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.764;QD=18.14;ReadPosRankSum=2.921;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3044,345,0 chrV 566456 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.53;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3897,426,0 chrV 566643 . A G 3126 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=22.17;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3159,354,0 chrV 566726 . T C 1162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.363;DP=280;Dels=0.00;FS=73.234;HaplotypeScore=23.9506;MLEAC=1;MLEAF=0.500;MQ=42.35;MQ0=0;MQRankSum=-11.613;QD=4.15;ReadPosRankSum=-4.605;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:187,90:280:99:1192,0,3467 chrV 566768 . T C 1011.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.895;DP=250;Dels=0.00;FS=0.504;HaplotypeScore=112.5252;MLEAC=1;MLEAF=0.500;MQ=38.51;MQ0=2;MQRankSum=-6.867;QD=4.04;ReadPosRankSum=4.054;SB=-4.870e+02 GT:AD:DP:GQ:PL 0/1:172,77:250:99:1041,0,3310 chrV 566784 . T G 1097.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;DP=244;Dels=0.00;FS=0.513;HaplotypeScore=59.6939;MLEAC=1;MLEAF=0.500;MQ=37.81;MQ0=2;MQRankSum=-6.472;QD=4.50;ReadPosRankSum=2.741;SB=-5.260e+02 GT:AD:DP:GQ:PL 0/1:165,76:244:99:1127,0,2994 chrV 566795 . T G 1298.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.555;DP=225;Dels=0.00;FS=28.188;HaplotypeScore=7.0869;MLEAC=1;MLEAF=0.500;MQ=37.85;MQ0=2;MQRankSum=-9.557;QD=5.77;ReadPosRankSum=-1.486;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/1:130,94:225:99:1328,0,2455 chrV 566813 . G A 215.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.105;DP=147;Dels=0.00;FS=0.779;HaplotypeScore=22.3297;MLEAC=1;MLEAF=0.500;MQ=39.43;MQ0=2;MQRankSum=-5.737;QD=1.46;ReadPosRankSum=-2.950;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:110,30:147:99:245,0,1993 chrV 566832 . T A 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.369;DP=95;Dels=0.00;FS=33.869;HaplotypeScore=13.6956;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=0;MQRankSum=-3.460;QD=0.80;ReadPosRankSum=1.554;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,13:95:99:106,0,1436 chrV 566839 . G T 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.113;DP=87;Dels=0.00;FS=35.147;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=42.33;MQ0=0;MQRankSum=-3.744;QD=0.91;ReadPosRankSum=-0.101;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,13:87:99:109,0,1317 chrV 566849 . T C 1183.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;DP=76;Dels=0.00;FS=42.743;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=40.89;MQ0=0;MQRankSum=3.711;QD=15.57;ReadPosRankSum=2.244;SB=-2.750e+02 GT:AD:DP:GQ:PL 0/1:12,64:76:99:1213,0,106 chrV 566871 . G A 909.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.891;DP=58;Dels=0.00;FS=13.300;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=2;MQRankSum=2.500;QD=15.67;ReadPosRankSum=3.103;SB=-1.681e+02 GT:AD:DP:GQ:PL 1/1:7,51:58:18:942,18,0 chrV 566930 . T A 990.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.693;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=27.4684;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=2;MQRankSum=-6.111;QD=7.23;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,74:137:99:1020,0,724 chrV 566931 . T C 625.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.406;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=31.3819;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=2;MQRankSum=8.964;QD=4.34;ReadPosRankSum=-0.797;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,63:144:99:655,0,1100 chrV 566939 . C T 633.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.264;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=38.2355;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=2;MQRankSum=8.628;QD=4.11;ReadPosRankSum=-4.114;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,63:154:99:663,0,1282 chrV 566940 . C A 385.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.455;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=38.2355;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=2;MQRankSum=-1.721;QD=2.50;ReadPosRankSum=3.645;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,39:154:99:415,0,1485 chrV 566942 . C G 579.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=65.3872;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=2;MQRankSum=8.520;QD=3.76;ReadPosRankSum=-6.912;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,63:154:99:609,0,1268 chrV 566952 . T A 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=2;MQRankSum=-2.748;QD=1.97;ReadPosRankSum=5.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,18:58:99:144,0,610 chrV 569477 . G A 223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=11.4335;MLEAC=1;MLEAF=0.500;MQ=29.87;MQ0=0;MQRankSum=0.634;QD=5.58;ReadPosRankSum=0.727;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:22,15:40:99:253,0,272 chrV 569487 . C G 459.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=18.0538;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=0.364;QD=6.85;ReadPosRankSum=0.172;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:31,32:67:99:489,0,394 chrV 569498 . T C 711.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.007;DP=87;Dels=0.00;FS=2.495;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=0;MQRankSum=-0.030;QD=8.17;ReadPosRankSum=0.619;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:48,39:87:99:741,0,657 chrV 569526 . G A 1690.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;DP=153;Dels=0.00;FS=12.097;HaplotypeScore=12.6149;MLEAC=1;MLEAF=0.500;MQ=30.46;MQ0=0;MQRankSum=-0.248;QD=11.05;ReadPosRankSum=-2.912;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:61,92:153:99:1720,0,950 chrV 569604 . G A 1480 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.178;DP=85;Dels=0.00;FS=12.817;HaplotypeScore=8.2058;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=9;MQRankSum=1.671;QD=17.41;ReadPosRankSum=1.833;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1513,161,0 chrV 569619 . C T 566 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=19.2333;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=11;MQRankSum=1.080;QD=11.32;ReadPosRankSum=-1.397;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:3,47:50:69:599,69,0 chrV 569627 . G A 219.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;DP=44;Dels=0.00;FS=20.645;HaplotypeScore=21.9809;MLEAC=1;MLEAF=0.500;MQ=17.98;MQ0=12;MQRankSum=-0.778;QD=4.98;ReadPosRankSum=-1.090;SB=-8.400e+01 GT:AD:DP:GQ:PL 0/1:9,35:44:32:249,0,32 chrV 569657 . A G 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;DP=51;Dels=0.00;FS=4.428;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.28;MQ0=5;MQRankSum=0.551;QD=5.16;ReadPosRankSum=0.934;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:22,29:51:99:293,0,119 chrV 569670 . T C 884 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.318;DP=71;Dels=0.00;FS=3.676;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=5;MQRankSum=1.328;QD=12.45;ReadPosRankSum=-0.842;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:89:917,89,0 chrV 569700 . G A 2313 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.525;DP=118;Dels=0.00;FS=35.038;HaplotypeScore=4.1978;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=2;MQRankSum=1.565;QD=19.60;ReadPosRankSum=1.403;SB=-1.001e+01 GT:AD:DP:GQ:PL 1/1:8,110:118:99:2346,221,0 chrV 569706 . A T 2265 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=1;MQRankSum=-0.116;QD=19.19;ReadPosRankSum=2.408;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2298,264,0 chrV 569707 . T A 2330 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=1;QD=19.75;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2363,261,0 chrV 569712 . G T 2405 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.8135;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=17.95;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2438,285,0 chrV 569725 . T A 2771 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.445;DP=156;Dels=0.00;FS=39.943;HaplotypeScore=6.7528;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=14;MQRankSum=0.549;QD=17.76;ReadPosRankSum=1.665;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,147:156:99:2804,312,0 chrV 569767 . G A 461.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.422;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=39;MQRankSum=0.505;QD=3.14;ReadPosRankSum=-0.821;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,48:147:99:491,0,891 chrV 569772 . C T 849.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.522;DP=139;Dels=0.00;FS=9.113;HaplotypeScore=1.8055;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=40;MQRankSum=0.582;QD=6.11;ReadPosRankSum=1.321;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,77:139:99:879,0,420 chrV 569806 . G T 308.19 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.398;DP=97;Dels=0.00;FS=8.239;HaplotypeScore=20.7456;MLEAC=1;MLEAF=0.500;MQ=15.70;MQ0=49;MQRankSum=1.723;QD=3.18;ReadPosRankSum=0.511;SB=20.80 GT:AD:DP:GQ:PL 1/1:17,65:97:39:340,39,0 chrV 569838 . A G 207 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=62;Dels=0.00;FS=16.038;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.90;MQ0=13;MQRankSum=2.891;QD=3.34;ReadPosRankSum=3.264;SB=-9.302e+01 GT:AD:DP:GQ:PL 1/1:4,58:62:30:240,30,0 chrV 569859 . G T 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=23.4055;MLEAC=1;MLEAF=0.500;MQ=20.98;MQ0=15;MQRankSum=0.598;QD=0.96;ReadPosRankSum=2.216;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:69,13:82:99:109,0,164 chrV 569864 . A G 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;DP=88;Dels=0.00;FS=6.841;HaplotypeScore=26.5760;MLEAC=1;MLEAF=0.500;MQ=21.03;MQ0=15;MQRankSum=2.436;QD=0.31;ReadPosRankSum=3.236;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:80,8:88:57:57,0,233 chrV 569889 . T A 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.708;DP=100;Dels=0.00;FS=3.040;HaplotypeScore=50.9774;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=6;MQRankSum=2.891;QD=0.61;ReadPosRankSum=3.797;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,46:100:91:91,0,183 chrV 569890 . T A 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;DP=100;Dels=0.00;FS=9.014;HaplotypeScore=48.0275;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=6;MQRankSum=2.856;QD=0.52;ReadPosRankSum=3.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,46:100:82:82,0,312 chrV 569918 . G A 339 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.530;DP=104;Dels=0.00;FS=15.272;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=3;MQRankSum=1.050;QD=3.26;ReadPosRankSum=1.370;SB=-1.200e-02 GT:AD:DP:GQ:PL 1/1:3,101:104:32:372,32,0 chrV 569974 . C T 250 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8180;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=0;MQRankSum=-0.999;QD=2.40;ReadPosRankSum=0.966;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:1,103:104:36:283,36,0 chrV 569975 . C G 224.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8180;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=0;MQRankSum=-1.631;QD=2.16;ReadPosRankSum=0.959;SB=-1.765e-01 GT:AD:DP:GQ:PL 1/1:1,102:104:17:257,17,0 chrV 569977 . T C 223.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.497;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8376;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=0;MQRankSum=-0.992;QD=2.15;ReadPosRankSum=0.824;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,102:104:9:256,9,0 chrV 570023 . G A 84.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.709;DP=49;Dels=0.00;FS=5.036;HaplotypeScore=17.2207;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=0;MQRankSum=0.472;QD=1.72;ReadPosRankSum=1.437;SB=-6.426e+01 GT:AD:DP:GQ:PL 1/1:27,22:49:15:117,15,0 chrV 570041 . C T 51.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;DP=82;Dels=0.05;FS=10.085;HaplotypeScore=81.3639;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=3;MQRankSum=0.327;QD=0.62;ReadPosRankSum=-0.845;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:35,40:78:81:81,0,472 chrV 570042 . G A 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;DP=86;Dels=0.05;FS=31.496;HaplotypeScore=83.7299;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=4;MQRankSum=1.185;QD=0.65;ReadPosRankSum=-1.871;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,32:82:86:86,0,473 chrV 570048 . A G 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;DP=116;Dels=0.00;FS=2.053;HaplotypeScore=79.8613;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=6;MQRankSum=-3.253;QD=1.03;ReadPosRankSum=3.840;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:95,20:116:99:150,0,1136 chrV 570069 . A G 176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;DP=177;Dels=0.00;FS=10.861;HaplotypeScore=19.9294;MLEAC=1;MLEAF=0.500;MQ=25.03;MQ0=7;MQRankSum=-1.421;QD=0.99;ReadPosRankSum=3.973;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:137,37:177:99:206,0,2318 chrV 570100 . A G 3647.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.353;DP=264;Dels=0.00;FS=4.038;HaplotypeScore=53.9483;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=8;MQRankSum=2.038;QD=13.81;ReadPosRankSum=4.466;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:43,219:264:5:3647,5,0 chrV 570125 . G A 1394.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.380;DP=328;Dels=0.01;FS=297.349;HaplotypeScore=93.2378;MLEAC=1;MLEAF=0.500;MQ=21.87;MQ0=19;MQRankSum=-2.851;QD=4.25;ReadPosRankSum=-1.340;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:175,147:325:99:1424,0,2450 chrV 570134 . T C 1684.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;DP=339;Dels=0.00;FS=208.650;HaplotypeScore=105.2228;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=26;MQRankSum=-5.059;QD=4.97;ReadPosRankSum=5.066;SB=-2.620e+02 GT:AD:DP:GQ:PL 0/1:134,204:338:99:1714,0,1798 chrV 570146 . T C 985.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.181;DP=304;Dels=0.00;FS=356.083;HaplotypeScore=49.2606;MLEAC=1;MLEAF=0.500;MQ=19.92;MQ0=28;MQRankSum=-1.317;QD=3.24;ReadPosRankSum=-6.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,126:304:99:1015,0,1879 chrV 570147 . G A 3723.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=297;Dels=0.00;FS=2.991;HaplotypeScore=44.7480;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=28;MQRankSum=0.521;QD=12.54;ReadPosRankSum=0.171;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:3,291:297:99:3723,484,0 chrV 570152 . A G 691.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.356;DP=290;Dels=0.03;FS=196.259;HaplotypeScore=29.3150;MLEAC=1;MLEAF=0.500;MQ=19.29;MQ0=31;MQRankSum=1.845;QD=2.38;ReadPosRankSum=-8.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:223,59:282:99:721,0,2015 chrV 570209 . G T 1004 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=89.9370;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=51;QD=6.92;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,137:143:99:1037,129,0 chrV 570226 . G C 281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.404;DP=112;Dels=0.00;FS=29.912;HaplotypeScore=23.1345;MLEAC=1;MLEAF=0.500;MQ=17.22;MQ0=52;MQRankSum=-0.150;QD=2.51;ReadPosRankSum=-3.898;SB=-7.188e+01 GT:AD:DP:GQ:PL 0/1:67,45:112:99:311,0,267 chrV 570235 . G A 313 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.846;DP=89;Dels=0.00;FS=4.030;HaplotypeScore=21.2209;MLEAC=2;MLEAF=1.00;MQ=16.24;MQ0=45;MQRankSum=0.685;QD=3.52;ReadPosRankSum=1.652;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:7,82:89:36:346,36,0 chrV 570240 . T C 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;DP=98;Dels=0.00;FS=6.032;HaplotypeScore=28.5074;MLEAC=1;MLEAF=0.500;MQ=17.26;MQ0=43;MQRankSum=-0.884;QD=0.14;ReadPosRankSum=-0.744;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:77,21:98:44:44,0,410 chrV 570246 . T G 342.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;DP=104;Dels=0.00;FS=59.507;HaplotypeScore=11.1866;MLEAC=1;MLEAF=0.500;MQ=17.38;MQ0=43;MQRankSum=4.680;QD=3.29;ReadPosRankSum=-1.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,23:104:99:372,0,152 chrV 570247 . G A 357.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.502;DP=104;Dels=0.00;FS=59.507;HaplotypeScore=11.1866;MLEAC=1;MLEAF=0.500;MQ=17.38;MQ0=43;MQRankSum=4.353;QD=3.43;ReadPosRankSum=-1.585;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,23:104:99:387,0,157 chrV 570253 . G C 484.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.296;DP=178;Dels=0.00;FS=135.426;HaplotypeScore=4.1307;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=43;MQRankSum=5.872;QD=2.72;ReadPosRankSum=3.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,42:178:99:514,0,138 chrV 570270 . A G 1122 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.837;DP=238;Dels=0.00;FS=0.939;HaplotypeScore=14.1531;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=40;MQRankSum=1.217;QD=4.71;ReadPosRankSum=0.145;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:57,180:237:43:1155,43,0 chrV 570271 . C G 1353 filter AC=2;AF=1.00;AN=2;DP=238;Dels=0.03;FS=0.000;HaplotypeScore=14.4069;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=40;QD=5.68;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,230:232:99:1386,171,0 chrV 570295 . T G 1134 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.824;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=52.1008;MLEAC=2;MLEAF=1.00;MQ=19.97;MQ0=7;MQRankSum=0.059;QD=4.28;ReadPosRankSum=0.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,110:264:94:1167,94,0 chrV 570296 . G A 1274 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.116;DP=266;Dels=0.00;FS=29.694;HaplotypeScore=57.7803;MLEAC=2;MLEAF=1.00;MQ=19.90;MQ0=7;MQRankSum=-2.383;QD=4.79;ReadPosRankSum=2.279;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:11,254:265:87:1307,87,0 chrV 570299 . G A 1061.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;DP=272;Dels=0.00;FS=277.716;HaplotypeScore=233.3020;MLEAC=1;MLEAF=0.500;MQ=19.91;MQ0=7;MQRankSum=8.428;QD=3.90;ReadPosRankSum=-0.932;SB=-1.197e-02 GT:AD:DP:GQ:PL 0/1:159,113:272:26:1091,0,26 chrV 570310 . G C 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310;DP=241;Dels=0.00;FS=276.005;HaplotypeScore=62.9969;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=2;MQRankSum=10.676;QD=5.13;ReadPosRankSum=-12.748;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:85,156:241:99:1270,158,0 chrV 570466 . T C 971 filter AC=2;AF=1.00;AN=2;DP=473;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=8.48;MQ0=261;QD=2.05;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,472:473:99:1004,129,0 chrV 571587 . C G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.58;MQ0=77;QD=0.24;SB=-2.476e+01 GT:AD:DP:GQ:PL 1/1:0,82:87:6:52,6,0 chrVI 950 . C A 436 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=17.6690;MLEAC=2;MLEAF=1.00;MQ=14.56;MQ0=17;MQRankSum=-1.400;QD=4.84;ReadPosRankSum=0.736;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:63:469,63,0 chrVI 954 . C T 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;DP=96;Dels=0.00;FS=34.455;HaplotypeScore=10.4540;MLEAC=1;MLEAF=0.500;MQ=14.46;MQ0=21;MQRankSum=4.026;QD=0.58;ReadPosRankSum=1.743;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,23:96:86:86,0,228 chrVI 969 . A G 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;DP=114;Dels=0.00;FS=44.070;HaplotypeScore=9.7907;MLEAC=1;MLEAF=0.500;MQ=15.37;MQ0=29;MQRankSum=1.882;QD=2.30;ReadPosRankSum=-1.492;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:54,59:113:54:292,0,54 chrVI 986 . C A 368 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.327;DP=154;Dels=0.00;FS=74.677;HaplotypeScore=10.2399;MLEAC=2;MLEAF=1.00;MQ=13.60;MQ0=60;MQRankSum=5.059;QD=2.39;ReadPosRankSum=-4.398;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:59,90:154:54:401,54,0 chrVI 1013 . A G 270 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.187;DP=243;Dels=0.00;FS=34.003;HaplotypeScore=5.3343;MLEAC=2;MLEAF=1.00;MQ=10.91;MQ0=139;MQRankSum=2.487;QD=1.11;ReadPosRankSum=-0.829;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:88,153:243:39:303,39,0 chrVI 1026 . C T 121.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.218;DP=304;Dels=0.00;FS=25.556;HaplotypeScore=21.0535;MLEAC=2;MLEAF=1.00;MQ=9.30;MQ0=205;MQRankSum=3.350;QD=0.40;ReadPosRankSum=3.228;SB=-1.421e+02 GT:AD:DP:GQ:PL 1/1:79,222:304:18:154,18,0 chrVI 1062 . C T 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.474;DP=634;Dels=0.00;FS=8.249;HaplotypeScore=88.6102;MLEAC=1;MLEAF=0.500;MQ=11.81;MQ0=396;MQRankSum=-2.078;QD=0.27;ReadPosRankSum=2.807;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:491,142:634:99:201,0,728 chrVI 1140 . G C 5531.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.863;DP=438;Dels=0.00;FS=38.819;HaplotypeScore=13.4747;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=105;MQRankSum=-1.972;QD=12.63;ReadPosRankSum=0.144;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:39,398:438:99:5531,665,0 chrVI 1142 . C G 5497.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=415;Dels=0.00;FS=38.819;HaplotypeScore=17.4188;MLEAC=2;MLEAF=1.00;MQ=18.95;MQ0=82;MQRankSum=-1.952;QD=13.25;ReadPosRankSum=-0.682;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:32,382:415:99:5497,665,0 chrVI 1152 . C G 3316.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.249;DP=236;Dels=0.00;FS=109.447;HaplotypeScore=9.3098;MLEAC=2;MLEAF=1.00;MQ=19.97;MQ0=9;MQRankSum=-0.430;QD=14.05;ReadPosRankSum=-3.291;SB=-4.007e+00 GT:AD:DP:GQ:PL 1/1:17,219:236:99:3316,383,0 chrVI 1154 . G C 2377 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.392;DP=172;Dels=0.00;FS=81.767;HaplotypeScore=7.3630;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=7;MQRankSum=-0.877;QD=13.82;ReadPosRankSum=-3.988;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,157:172:99:2410,272,0 chrVI 1160 . G A 748 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.379;DP=66;Dels=0.00;FS=59.707;HaplotypeScore=6.5743;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=7;MQRankSum=-0.551;QD=11.33;ReadPosRankSum=-4.278;SB=-4.007e+00 GT:AD:DP:GQ:PL 1/1:14,52:66:80:781,80,0 chrVI 1323 . C T 1282 filter AC=2;AF=1.00;AN=2;DP=652;Dels=0.00;FS=0.000;HaplotypeScore=2.5326;MLEAC=2;MLEAF=1.00;MQ=10.21;MQ0=428;QD=1.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,650:652:99:1315,165,0 chrVI 1351 . A T 2181 filter AC=2;AF=1.00;AN=2;DP=786;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=11.49;MQ0=494;QD=2.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,786:786:99:2214,258,0 chrVI 1394 . T A 686 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.68;MQ0=111;QD=2.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,253:253:84:719,84,0 chrVI 4071 . G C 878.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.917;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=697.3198;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=18;MQRankSum=-0.072;QD=2.55;ReadPosRankSum=-14.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,210:344:99:908,0,161 chrVI 4114 . G A 1202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.574;DP=505;Dels=0.00;FS=9.116;HaplotypeScore=192.2516;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=22;MQRankSum=-1.327;QD=2.38;ReadPosRankSum=4.454;SB=-5.980e+02 GT:AD:DP:GQ:PL 0/1:296,208:505:99:1232,0,1440 chrVI 4257 . C T 14464.01 filter AC=2;AF=1.00;AN=2;DP=766;DS;Dels=0.00;FS=0.000;HaplotypeScore=46.5245;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=18;QD=18.88;SB=-6.703e+03 GT:AD:DP:GQ:PL 1/1:0,758:766:99:14464,1737,0 chrVI 4328 . G A 755 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.258;DP=128;Dels=0.00;FS=4.498;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.30;MQ0=24;MQRankSum=-0.275;QD=5.90;ReadPosRankSum=2.854;SB=-6.886e-03 GT:AD:DP:GQ:PL 1/1:18,110:128:43:788,43,0 chrVI 4382 . G A 5120.01 filter AC=2;AF=1.00;AN=2;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.74;MQ0=1;QD=12.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,399:399:99:5120,605,0 chrVI 4429 . A C 7106.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.874;DP=623;Dels=0.00;FS=0.000;HaplotypeScore=512.5473;MLEAC=2;MLEAF=1.00;MQ=23.53;MQ0=8;MQRankSum=-5.279;QD=11.41;ReadPosRankSum=0.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:30,593:623:99:7106,454,0 chrVI 4436 . C T 8078.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=611;Dels=0.00;FS=0.000;HaplotypeScore=525.5596;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=11;MQRankSum=0.722;QD=13.22;ReadPosRankSum=1.726;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,606:611:99:8078,941,0 chrVI 4482 . C A 4143.01 filter AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=2.6594;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=55;QD=11.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,358:358:99:4143,483,0 chrVI 4505 . T A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.685;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=26.5045;MLEAC=1;MLEAF=0.500;MQ=22.98;MQ0=55;MQRankSum=2.919;QD=0.18;ReadPosRankSum=-1.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,14:197:65:65,0,1170 chrVI 4507 . G A 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.222;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=29.6592;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=55;MQRankSum=1.471;QD=0.31;ReadPosRankSum=-2.532;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,14:176:84:84,0,1039 chrVI 4548 . G T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=13.04;MQ0=23;QD=0.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:33:6:46,6,0 chrVI 4669 . C A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=2;QD=3.21;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:87,12,0 chrVI 4670 . A G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=2;QD=3.21;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:87,12,0 chrVI 4679 . T G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=2;QD=3.21;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:87,12,0 chrVI 4947 . A C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=6.1369;MLEAC=2;MLEAF=1.00;MQ=19.19;MQ0=2;QD=0.71;SB=-2.774e+01 GT:AD:DP:GQ:PL 1/1:0,20:25:6:49,6,0 chrVI 4976 . T C 689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=59;Dels=0.00;FS=2.499;HaplotypeScore=7.5403;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=3;MQRankSum=2.466;QD=11.68;ReadPosRankSum=3.293;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:4,55:59:87:722,87,0 chrVI 5016 . G A 365.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;DP=55;Dels=0.00;FS=29.963;HaplotypeScore=2.7789;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=6;MQRankSum=0.884;QD=6.64;ReadPosRankSum=3.277;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,34:55:99:395,0,117 chrVI 5017 . T A 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;DP=55;Dels=0.00;FS=30.530;HaplotypeScore=3.7523;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=6;MQRankSum=-0.620;QD=1.73;ReadPosRankSum=-3.140;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:37,18:55:99:125,0,443 chrVI 5027 . T C 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.632;DP=51;Dels=0.00;FS=4.867;HaplotypeScore=2.7355;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=5;MQRankSum=-1.172;QD=0.86;ReadPosRankSum=-1.921;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:34,16:51:74:74,0,453 chrVI 5028 . G A 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.499;DP=50;Dels=0.00;FS=4.867;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=4;MQRankSum=-0.726;QD=0.92;ReadPosRankSum=-1.875;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:34,16:50:76:76,0,410 chrVI 5045 . T A 362 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=3;QD=12.93;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:45:395,45,0 chrVI 5077 . C T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=1.53;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:48,6,0 chrVI 5081 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=1.44;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:47,6,0 chrVI 5087 . A G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=1.27;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:45,6,0 chrVI 5089 . A G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=1.27;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:45,6,0 chrVI 5098 . G A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=1.30;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:44,6,0 chrVI 5237 . C T 191.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.447;DP=51;Dels=0.00;FS=13.339;HaplotypeScore=21.2997;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=0;MQRankSum=1.351;QD=3.75;ReadPosRankSum=-0.378;SB=-1.542e+01 GT:AD:DP:GQ:PL 0/1:13,38:51:7:221,0,7 chrVI 5243 . G C 254 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=78.1658;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=0;QD=4.54;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,53:56:36:287,36,0 chrVI 5257 . C T 79.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.403;DP=55;Dels=0.00;FS=11.723;HaplotypeScore=23.0730;MLEAC=1;MLEAF=0.500;MQ=22.54;MQ0=0;MQRankSum=-0.149;QD=1.44;ReadPosRankSum=-1.059;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:20,35:55:99:109,0,258 chrVI 5266 . T C 229.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;DP=53;Dels=0.00;FS=8.599;HaplotypeScore=13.4332;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=0;MQRankSum=1.646;QD=4.32;ReadPosRankSum=4.028;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:32,21:53:38:259,0,38 chrVI 5311 . G C 235 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.13;MQ0=0;QD=13.06;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:36:268,36,0 chrVI 5318 . T G 140.03 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=9.34;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:173,24,0 chrVI 5324 . T G 140.03 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.67;MQ0=0;QD=11.67;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,11:12:24:173,24,0 chrVI 5434 . T C 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;DP=53;Dels=0.00;FS=12.108;HaplotypeScore=8.5759;MLEAC=1;MLEAF=0.500;MQ=13.05;MQ0=20;MQRankSum=1.657;QD=0.91;ReadPosRankSum=0.257;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:47,6:53:78:78,0,86 chrVI 5448 . C T 306 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.77;MQ0=19;QD=4.57;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:45:339,45,0 chrVI 5455 . T A 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.303;DP=73;Dels=0.00;FS=27.526;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=13.94;MQ0=19;MQRankSum=1.717;QD=0.79;ReadPosRankSum=1.911;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:65,8:73:88:88,0,135 chrVI 5458 . A C 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.472;DP=71;Dels=0.00;FS=28.840;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=13.71;MQ0=18;MQRankSum=1.503;QD=0.77;ReadPosRankSum=2.373;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,8:71:85:85,0,160 chrVI 5459 . A G 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;DP=71;Dels=0.00;FS=28.840;HaplotypeScore=23.8330;MLEAC=1;MLEAF=0.500;MQ=13.71;MQ0=18;MQRankSum=-1.801;QD=1.75;ReadPosRankSum=-2.497;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:8,63:71:85:154,0,85 chrVI 5494 . T A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;DP=69;Dels=0.00;FS=47.121;HaplotypeScore=4.8852;MLEAC=1;MLEAF=0.500;MQ=13.52;MQ0=19;MQRankSum=2.828;QD=0.54;ReadPosRankSum=-1.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,9:69:67:67,0,156 chrVI 5504 . T A 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;DP=62;Dels=0.00;FS=22.784;HaplotypeScore=38.3203;MLEAC=1;MLEAF=0.500;MQ=13.28;MQ0=18;MQRankSum=2.307;QD=0.29;ReadPosRankSum=2.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,4:62:48:48,0,156 chrVI 5506 . C T 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=61;Dels=0.00;FS=23.967;HaplotypeScore=38.4616;MLEAC=1;MLEAF=0.500;MQ=13.39;MQ0=17;MQRankSum=2.739;QD=0.30;ReadPosRankSum=1.986;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,4:61:48:48,0,158 chrVI 5509 . C T 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;DP=57;Dels=0.00;FS=21.946;HaplotypeScore=12.4326;MLEAC=1;MLEAF=0.500;MQ=13.71;MQ0=15;MQRankSum=2.035;QD=0.42;ReadPosRankSum=1.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,4:57:54:54,0,120 chrVI 5510 . A G 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;DP=56;Dels=0.00;FS=21.946;HaplotypeScore=12.4326;MLEAC=1;MLEAF=0.500;MQ=13.83;MQ0=14;MQRankSum=1.650;QD=0.43;ReadPosRankSum=1.907;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,4:56:54:54,0,120 chrVI 5512 . T G 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;DP=50;Dels=0.00;FS=24.976;HaplotypeScore=12.4326;MLEAC=1;MLEAF=0.500;MQ=14.40;MQ0=11;MQRankSum=1.541;QD=0.60;ReadPosRankSum=1.736;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:44,4:50:60:60,0,83 chrVI 5515 . T G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DP=48;Dels=0.00;FS=24.976;HaplotypeScore=8.2863;MLEAC=1;MLEAF=0.500;MQ=14.28;MQ0=11;MQRankSum=1.785;QD=0.69;ReadPosRankSum=1.736;SB=-6.503e-03 GT:AD:DP:GQ:PL 0/1:43,4:48:63:63,0,66 chrVI 5517 . C T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DP=43;Dels=0.00;FS=27.107;HaplotypeScore=8.7470;MLEAC=1;MLEAF=0.500;MQ=14.68;MQ0=9;MQRankSum=2.023;QD=0.77;ReadPosRankSum=1.453;SB=-6.493e-03 GT:AD:DP:GQ:PL 0/1:37,4:43:63:63,0,65 chrVI 5605 . C A 54.51 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.95;MQ0=5;QD=3.41;SB=-2.239e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:12:87,12,0 chrVI 5625 . T C 208.17 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.142;DP=57;Dels=0.00;FS=12.324;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.44;MQ0=20;MQRankSum=-2.031;QD=3.65;ReadPosRankSum=-1.530;SB=-1.302e+02 GT:AD:DP:GQ:PL 1/1:14,43:57:17:241,17,0 chrVI 5643 . A G 254.04 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.887;DP=77;Dels=0.00;FS=8.808;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.83;MQ0=20;MQRankSum=-1.583;QD=3.30;ReadPosRankSum=1.019;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:12,65:77:23:287,23,0 chrVI 5664 . T G 252 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=75;Dels=0.00;FS=4.771;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=12.70;MQ0=20;MQRankSum=-1.412;QD=3.36;ReadPosRankSum=1.668;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:11,63:75:39:285,39,0 chrVI 5667 . T C 274 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.64;MQ0=20;QD=3.70;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:10,64:74:42:307,42,0 chrVI 5764 . C T 80.26 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.68;MQ0=14;QD=2.87;SB=-8.676e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:15:113,15,0 chrVI 5783 . A C 221.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.961;DP=42;Dels=0.00;FS=8.060;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=15.63;MQ0=17;MQRankSum=2.185;QD=5.26;ReadPosRankSum=-0.728;SB=-5.372e+01 GT:AD:DP:GQ:PL 1/1:16,26:42:1:250,1,0 chrVI 5791 . C T 220.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.068;DP=42;Dels=0.00;FS=8.060;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=15.63;MQ0=17;MQRankSum=2.418;QD=5.24;ReadPosRankSum=0.320;SB=-5.387e+01 GT:AD:DP:GQ:PL 1/1:16,26:42:1:249,1,0 chrVI 5804 . A G 211.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;DP=43;Dels=0.00;FS=13.359;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=15.20;MQ0=17;MQRankSum=1.502;QD=4.91;ReadPosRankSum=2.293;SB=-4.942e+01 GT:AD:DP:GQ:PL 0/1:18,25:43:17:241,0,17 chrVI 5825 . G C 176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=48;Dels=0.00;FS=11.357;HaplotypeScore=6.9194;MLEAC=1;MLEAF=0.500;MQ=14.54;MQ0=17;MQRankSum=1.661;QD=3.67;ReadPosRankSum=0.781;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/1:22,26:48:99:206,0,101 chrVI 5849 . A T 281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.31;MQ0=3;MQRankSum=-0.449;QD=9.37;ReadPosRankSum=1.605;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:42:314,42,0 chrVI 5862 . G T 119.06 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.93;MQ0=0;QD=5.95;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:21:152,21,0 chrVI 5864 . C A 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.81;MQ0=0;QD=4.18;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:108,15,0 chrVI 5865 . T A 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.81;MQ0=0;QD=4.18;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:108,15,0 chrVI 5877 . C T 54.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.78;MQ0=0;QD=3.41;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:87,12,0 chrVI 5879 . T C 54.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.78;MQ0=0;QD=3.41;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:87,12,0 chrVI 5905 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.200;DP=16;Dels=0.00;FS=30.584;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.00;MQ=17.49;MQ0=0;MQRankSum=0.488;QD=0.99;ReadPosRankSum=3.200;SB=-2.276e+01 GT:AD:DP:GQ:PL 1/1:6,10:16:6:47,6,0 chrVI 5953 . G C 107.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;DP=37;Dels=0.00;FS=22.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.11;MQ0=15;MQRankSum=1.336;QD=2.89;ReadPosRankSum=-2.538;SB=4.348e-03 GT:AD:DP:GQ:PL 0/1:28,9:37:60:137,0,60 chrVI 5955 . A T 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072;DP=37;Dels=0.00;FS=22.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.11;MQ0=15;MQRankSum=1.870;QD=2.65;ReadPosRankSum=-2.538;SB=-1.069e-03 GT:AD:DP:GQ:PL 0/1:28,9:37:63:128,0,63 chrVI 5961 . C T 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=38;Dels=0.00;FS=25.660;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.11;MQ0=15;MQRankSum=1.954;QD=2.84;ReadPosRankSum=-2.078;SB=3.407e-04 GT:AD:DP:GQ:PL 0/1:28,10:38:62:138,0,62 chrVI 5982 . T C 215 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.69;MQ0=15;QD=5.51;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:30:248,30,0 chrVI 6017 . A G 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;DP=25;Dels=0.00;FS=5.935;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=19.76;MQ0=4;MQRankSum=0.187;QD=2.24;ReadPosRankSum=1.529;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,7:25:86:86,0,91 chrVI 6018 . T C 228 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=20.60;MQ0=2;QD=9.91;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:33:261,33,0 chrVI 6027 . T C 105.13 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=22.47;MQ0=1;QD=5.84;SB=-4.311e+01 GT:AD:DP:GQ:PL 1/1:0,13:18:18:138,18,0 chrVI 6033 . T A 80.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.24;MQ0=0;QD=6.69;SB=-4.320e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:113,15,0 chrVI 6130 . A G 131.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.333;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=134.9716;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=0;MQRankSum=-0.336;QD=0.81;ReadPosRankSum=0.203;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:7,154:161:21:164,21,0 chrVI 6140 . C T 155.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.547;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=0;MQRankSum=0.044;QD=0.99;ReadPosRankSum=-1.282;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:8,148:156:24:188,24,0 chrVI 6149 . G C 200 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=22.95;MQ0=0;QD=1.37;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,138:146:30:233,30,0 chrVI 6155 . T C 199 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.479;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=0;MQRankSum=0.258;QD=1.37;ReadPosRankSum=-1.586;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:9,136:145:30:232,30,0 chrVI 6159 . C A 199 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=0;MQRankSum=0.524;QD=1.78;ReadPosRankSum=-0.631;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:9,103:112:30:232,30,0 chrVI 6160 . T G 199 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=40.9634;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=0;QD=1.78;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,112:112:30:232,30,0 chrVI 6170 . C T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;DP=130;Dels=0.00;FS=13.353;HaplotypeScore=19.5280;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=0;MQRankSum=1.160;QD=0.13;ReadPosRankSum=-1.455;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:48,82:130:47:47,0,130 chrVI 6179 . A T 233 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=35.1210;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;MQRankSum=1.186;QD=2.26;ReadPosRankSum=0.329;SB=-2.184e+01 GT:AD:DP:GQ:PL 1/1:10,93:103:33:266,33,0 chrVI 6181 . T C 229 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.157;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=0;MQRankSum=1.100;QD=2.27;ReadPosRankSum=-0.610;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:8,93:101:33:262,33,0 chrVI 6182 . A G 217 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.975;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=0;MQRankSum=0.836;QD=2.15;ReadPosRankSum=-0.622;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:8,93:101:33:250,33,0 chrVI 6192 . T C 223 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.898;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;MQRankSum=1.528;QD=2.40;ReadPosRankSum=0.774;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:8,85:93:33:256,33,0 chrVI 6197 . G A 227 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.505;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=0;MQRankSum=0.320;QD=2.61;ReadPosRankSum=0.164;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:7,80:87:33:260,33,0 chrVI 6201 . A G 103.13 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=0;QD=1.59;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:18:136,18,0 chrVI 6203 . C G 103.13 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=0;QD=1.59;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:18:136,18,0 chrVI 6204 . T C 109.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=0;MQRankSum=1.207;QD=1.65;ReadPosRankSum=1.680;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:18:142,18,0 chrVI 6206 . A G 102.13 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=0;QD=1.55;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:18:135,18,0 chrVI 6217 . C A 63.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.982;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=0;MQRankSum=-1.020;QD=1.20;ReadPosRankSum=0.404;SB=-2.251e+01 GT:AD:DP:GQ:PL 1/1:3,50:53:12:96,12,0 chrVI 6242 . G A 50.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=79;Dels=0.00;FS=3.239;HaplotypeScore=2.9615;MLEAC=2;MLEAF=1.00;MQ=19.65;MQ0=1;MQRankSum=-1.066;QD=0.65;ReadPosRankSum=-1.022;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:9:83,9,0 chrVI 6248 . T C 120.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=10.272;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=19.30;MQ0=1;MQRankSum=-1.588;QD=1.18;ReadPosRankSum=2.327;SB=-1.591e+02 GT:AD:DP:GQ:PL 1/1:2,99:102:18:153,18,0 chrVI 6260 . G T 373.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.953;DP=140;Dels=0.00;FS=25.719;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=20.05;MQ0=1;MQRankSum=-0.504;QD=2.66;ReadPosRankSum=-0.893;SB=-2.490e+02 GT:AD:DP:GQ:PL 0/1:31,109:140:76:403,0,76 chrVI 6351 . A G 3129 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=213;Dels=0.00;FS=5.332;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=8;MQRankSum=-2.211;QD=14.69;ReadPosRankSum=2.946;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:3162,389,0 chrVI 6354 . C A,G 2594.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.02;MQ0=7;QD=13.04;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/2:0,52,147:199:99:2654,1843,1723,811,0,551 chrVI 6355 . T C 534.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.808;DP=197;Dels=0.00;FS=9.209;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=8;MQRankSum=0.347;QD=2.71;ReadPosRankSum=2.265;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:147,50:197:99:564,0,1645 chrVI 6391 . A G 279.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DP=163;Dels=0.00;FS=26.320;HaplotypeScore=80.0020;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=10;MQRankSum=-0.500;QD=1.71;ReadPosRankSum=-0.500;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,33:163:99:309,0,527 chrVI 6417 . T C 364 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=78;Dels=0.00;FS=3.882;HaplotypeScore=6.0282;MLEAC=2;MLEAF=1.00;MQ=16.53;MQ0=10;MQRankSum=-0.630;QD=4.67;ReadPosRankSum=1.680;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:1,75:78:48:397,48,0 chrVI 6473 . T C 267.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.288;DP=44;Dels=0.00;FS=11.139;HaplotypeScore=8.3606;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=3;MQRankSum=0.133;QD=6.07;ReadPosRankSum=1.644;SB=-1.627e+01 GT:AD:DP:GQ:PL 1/1:1,41:44:15:300,15,0 chrVI 6485 . C T 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.747;DP=62;Dels=0.00;FS=2.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.91;MQ0=1;MQRankSum=1.599;QD=0.87;ReadPosRankSum=-1.287;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,16:62:84:84,0,356 chrVI 6491 . T C 624 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=0;QD=9.31;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:78:657,78,0 chrVI 6499 . T C 697 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.16;MQ0=0;QD=8.40;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:87:730,87,0 chrVI 6509 . T C 636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.414;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.42;MQ0=0;MQRankSum=0.299;QD=7.31;ReadPosRankSum=-0.219;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,86:87:56:669,56,0 chrVI 6516 . C G 597 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=0;QD=7.46;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:75:630,75,0 chrVI 6522 . A C 542 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=0;QD=6.69;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:72:575,72,0 chrVI 6526 . G A 481 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=6.97;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:60:514,60,0 chrVI 6528 . A G 478 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;MQRankSum=0.515;QD=6.93;ReadPosRankSum=2.898;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:3,66:69:60:511,60,0 chrVI 6529 . G A 483 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=7.32;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:60:516,60,0 chrVI 6530 . C A 500 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=7.58;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:60:533,60,0 chrVI 6533 . T G 478 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=0;QD=6.83;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:60:511,60,0 chrVI 6548 . T C 174.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.403;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=1;MQRankSum=0.872;QD=2.32;ReadPosRankSum=-2.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,50:75:99:204,0,141 chrVI 6554 . T G 165.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.8947;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=1;MQRankSum=0.006;QD=2.29;ReadPosRankSum=-2.119;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,48:72:99:195,0,129 chrVI 6556 . A C 175.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.8947;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=1;MQRankSum=1.009;QD=2.40;ReadPosRankSum=-1.451;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,48:73:99:205,0,125 chrVI 6560 . G C 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.513;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=1;MLEAF=0.500;MQ=23.00;MQ0=1;MQRankSum=-0.508;QD=1.32;ReadPosRankSum=1.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,25:73:99:126,0,174 chrVI 6563 . C T 384 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=1;QD=5.26;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:48:417,48,0 chrVI 6569 . G C 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.507;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=21.82;MQ0=1;MQRankSum=0.185;QD=0.88;ReadPosRankSum=-0.295;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,24:66:88:88,0,114 chrVI 6570 . T C 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=1;MQRankSum=0.308;QD=0.97;ReadPosRankSum=-0.602;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,24:65:93:93,0,101 chrVI 6634 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.500;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.44;MQ0=0;MQRankSum=1.439;QD=0.66;ReadPosRankSum=0.092;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:16,8:24:6:47,6,0 chrVI 6641 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.75;MQ0=0;QD=0.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:6:47,6,0 chrVI 6647 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.83;MQ0=0;QD=0.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:6:49,6,0 chrVI 6650 . T G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.119;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.14;MQ0=0;MQRankSum=2.045;QD=0.75;ReadPosRankSum=-0.501;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:12,8:20:6:46,6,0 chrVI 6653 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.53;MQ0=0;MQRankSum=2.060;QD=0.93;ReadPosRankSum=0.553;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:11,6:17:6:47,6,0 chrVI 6657 . C A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.05;MQ0=0;MQRankSum=1.743;QD=1.20;ReadPosRankSum=0.065;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:8,6:14:6:48,6,0 chrVI 6860 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.18;MQ0=6;QD=4.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:9:80,9,0 chrVI 7032 . T A 43.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.15;MQ0=10;QD=2.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:9:76,9,0 chrVI 7048 . G A 13.25 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.59;MQ0=7;MQRankSum=0.736;QD=1.02;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:1,12:13:18:43,0,18 chrVI 7089 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.07;MQ0=1;QD=5.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:9:75,9,0 chrVI 7091 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.07;MQ0=1;QD=5.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:8:9:79,9,0 chrVI 7094 . A G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=1;MQRankSum=0.731;QD=7.00;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,4:6:9:74,9,0 chrVI 7096 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=10.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:74,9,0 chrVI 7097 . T A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=11.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:80,9,0 chrVI 7101 . C T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.86;MQ0=0;QD=8.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:81,9,0 chrVI 7382 . G A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=102;Dels=0.00;FS=7.671;HaplotypeScore=9.0986;MLEAC=1;MLEAF=0.500;MQ=15.31;MQ0=52;MQRankSum=1.537;QD=0.16;ReadPosRankSum=-1.985;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:76,26:102:46:46,0,456 chrVI 7397 . G T 537.72 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;DP=99;Dels=0.00;FS=27.730;HaplotypeScore=11.4142;MLEAC=1;MLEAF=0.500;MQ=19.02;MQ0=46;MQRankSum=2.927;QD=5.43;ReadPosRankSum=1.854;SB=-7.127e+01 GT:AD:DP:GQ:PL 0/1:30,42:99:8:567,0,8 chrVI 7418 . C T 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.565;DP=92;Dels=0.00;FS=1.185;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=27;MQRankSum=-2.249;QD=1.04;ReadPosRankSum=2.119;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:67,24:92:99:126,0,784 chrVI 7619 . A T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.679;DP=147;Dels=0.00;FS=19.091;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=19.77;MQ0=22;MQRankSum=-7.437;QD=0.12;ReadPosRankSum=-1.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,62:147:48:48,0,816 chrVI 7622 . C T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DP=144;Dels=0.00;FS=19.091;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=19.97;MQ0=19;MQRankSum=-7.648;QD=0.14;ReadPosRankSum=-0.877;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,62:144:50:50,0,819 chrVI 7643 . G C 913 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=8;QD=7.61;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:946,117,0 chrVI 7656 . C T 708.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.455;DP=134;Dels=0.00;FS=33.355;HaplotypeScore=3.5199;MLEAC=1;MLEAF=0.500;MQ=20.85;MQ0=15;MQRankSum=7.633;QD=5.28;ReadPosRankSum=-2.140;SB=-4.186e+02 GT:AD:DP:GQ:PL 0/1:64,69:134:64:738,0,64 chrVI 7682 . G A 526.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DP=96;Dels=0.00;FS=67.547;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=14;MQRankSum=5.634;QD=5.48;ReadPosRankSum=0.469;SB=-3.960e+02 GT:AD:DP:GQ:PL 0/1:47,49:96:48:556,0,48 chrVI 7701 . T C 335 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.68;MQ0=12;QD=7.79;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:45:368,45,0 chrVI 7730 . T C 224.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;DP=41;Dels=0.00;FS=15.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=19.24;MQ0=18;MQRankSum=0.867;QD=5.47;ReadPosRankSum=1.506;SB=-3.429e+00 GT:AD:DP:GQ:PL 0/1:19,22:41:7:254,0,7 chrVI 7740 . C T 119.46 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DP=40;Dels=0.00;FS=8.073;HaplotypeScore=5.2150;MLEAC=1;MLEAF=0.500;MQ=19.51;MQ0=16;MQRankSum=0.857;QD=2.99;ReadPosRankSum=2.227;SB=-4.435e+00 GT:AD:DP:GQ:PL 0/1:18,20:40:1:148,0,1 chrVI 7745 . A T 70.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;DP=34;Dels=0.00;FS=6.662;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.18;MQ0=16;MQRankSum=-1.540;QD=2.07;ReadPosRankSum=2.606;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:3,31:34:12:103,12,0 chrVI 7746 . G A 74.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.02;MQ0=17;QD=2.33;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:16,15:32:12:107,12,0 chrVI 7752 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.32;MQ0=21;QD=1.26;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:9:80,9,0 chrVI 7767 . T C 596.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;DP=72;Dels=0.00;FS=10.344;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.73;MQ0=19;MQRankSum=1.978;QD=8.28;ReadPosRankSum=0.154;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:27,45:72:65:626,0,65 chrVI 7783 . G A 1190.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.198;DP=128;Dels=0.00;FS=28.315;HaplotypeScore=80.2989;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=19;MQRankSum=3.592;QD=9.30;ReadPosRankSum=1.645;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:46,82:128:99:1220,0,305 chrVI 7787 . T C 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.941;DP=135;Dels=0.00;FS=19.090;HaplotypeScore=22.2652;MLEAC=1;MLEAF=0.500;MQ=21.98;MQ0=20;MQRankSum=0.403;QD=0.97;ReadPosRankSum=-3.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,19:135:99:161,0,1449 chrVI 7792 . T G 1311.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.583;DP=139;Dels=0.00;FS=37.173;HaplotypeScore=21.4331;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=24;MQRankSum=3.682;QD=9.43;ReadPosRankSum=1.741;SB=-2.190e+02 GT:AD:DP:GQ:PL 0/1:49,90:139:99:1341,0,288 chrVI 7856 . G C 560.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.619;DP=140;Dels=0.01;FS=9.070;HaplotypeScore=40.4919;MLEAC=1;MLEAF=0.500;MQ=18.21;MQ0=36;MQRankSum=-3.332;QD=4.00;ReadPosRankSum=4.576;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:76,62:138:99:590,0,576 chrVI 7861 . C T 462.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;DP=133;Dels=0.01;FS=12.163;HaplotypeScore=24.9792;MLEAC=1;MLEAF=0.500;MQ=17.10;MQ0=39;MQRankSum=2.532;QD=3.47;ReadPosRankSum=-3.639;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:65,66:132:99:492,0,496 chrVI 7916 . T A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=51;Dels=0.00;FS=4.771;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=7.17;MQ0=45;MQRankSum=0.736;QD=0.37;ReadPosRankSum=-0.736;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:12,39:51:6:50,6,0 chrVI 7938 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.89;MQ0=51;QD=0.36;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:38,25:63:6:54,6,0 chrVI 8038 . C T 93.26 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=8.92;MQ0=36;QD=1.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:48:15:126,15,0 chrVI 8098 . A G 66.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.74;MQ0=35;MQRankSum=0.742;QD=1.58;ReadPosRankSum=0.742;SB=-7.355e+01 GT:AD:DP:GQ:PL 1/1:8,34:42:12:99,12,0 chrVI 8154 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.41;MQ0=15;QD=0.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:6:49,6,0 chrVI 8193 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=6;QD=1.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:9:80,9,0 chrVI 8262 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.27;MQ0=16;QD=0.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:6:45,6,0 chrVI 8323 . C T 247 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=20.27;MQ0=4;QD=5.04;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:33:280,33,0 chrVI 8342 . G A 461.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.410;DP=134;Dels=0.00;FS=25.026;HaplotypeScore=23.0844;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=4;MQRankSum=0.538;QD=3.44;ReadPosRankSum=-3.330;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:67,64:134:99:491,0,511 chrVI 8551 . C A 626.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.995;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.99;MQ0=26;MQRankSum=-1.669;QD=4.35;ReadPosRankSum=3.177;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,102:144:99:656,0,169 chrVI 8569 . A C 1231 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5698;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=23;QD=7.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:1264,153,0 chrVI 8577 . A G 177.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1907;MLEAC=1;MLEAF=0.500;MQ=21.42;MQ0=19;MQRankSum=0.357;QD=1.10;ReadPosRankSum=1.475;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,45:161:99:207,0,769 chrVI 8578 . T C 1164 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=158;Dels=0.00;FS=16.690;HaplotypeScore=42.0382;MLEAC=2;MLEAF=1.00;MQ=21.72;MQ0=18;MQRankSum=-1.608;QD=7.37;ReadPosRankSum=1.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:1197,147,0 chrVI 8588 . A G 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;DP=155;Dels=0.00;FS=2.388;HaplotypeScore=41.6306;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=17;MQRankSum=-2.766;QD=0.66;ReadPosRankSum=-0.974;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,42:155:99:133,0,885 chrVI 8595 . C T 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;DP=147;Dels=0.00;FS=5.170;HaplotypeScore=39.7150;MLEAC=1;MLEAF=0.500;MQ=22.13;MQ0=17;MQRankSum=-0.784;QD=0.78;ReadPosRankSum=2.765;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,45:147:99:145,0,782 chrVI 8661 . A G 188.01 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=15.8154;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=9;QD=8.95;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:27:221,27,0 chrVI 8668 . A C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.479;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=15.8154;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=8;MQRankSum=-2.589;QD=0.60;ReadPosRankSum=-2.219;SB=1.24 GT:AD:DP:GQ:PL 1/1:17,3:20:6:43,6,0 chrVI 8753 . T C 1596 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9081;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=4;MQRankSum=1.367;QD=8.82;ReadPosRankSum=2.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:1629,186,0 chrVI 8754 . C T 1551 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9081;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=4;MQRankSum=0.937;QD=8.57;ReadPosRankSum=2.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:1584,186,0 chrVI 8759 . T G 1530 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.7223;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=4;MQRankSum=1.626;QD=7.65;ReadPosRankSum=1.714;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,199:200:99:1563,189,0 chrVI 8776 . T C 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=2;MQRankSum=0.686;QD=7.28;ReadPosRankSum=1.716;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,213:214:99:1590,189,0 chrVI 8786 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=24.99;MQ0=1;QD=7.84;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,214:214:99:1711,192,0 chrVI 8787 . T C 1599 filter AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=5;QD=7.30;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:4,215:219:99:1632,195,0 chrVI 8801 . A G 1546 filter AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.5239;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=8;QD=7.50;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,206:206:99:1579,192,0 chrVI 8849 . G C 44.97 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.29;MQ0=8;QD=1.02;SB=-9.172e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:9:77,9,0 chrVI 8864 . A G 90.26 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.80;MQ0=10;QD=2.74;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:15:123,15,0 chrVI 8893 . A G 347 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=13;QD=8.67;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:45:380,45,0 chrVI 8925 . C T 552.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.096;DP=192;Dels=0.00;FS=0.616;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=31.17;MQ0=14;MQRankSum=0.817;QD=2.88;ReadPosRankSum=1.497;SB=-3.520e+02 GT:AD:DP:GQ:PL 0/1:138,54:192:99:582,0,2140 chrVI 8965 . A G 3400.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.264;DP=390;Dels=0.00;FS=8.322;HaplotypeScore=8.8446;MLEAC=1;MLEAF=0.500;MQ=30.60;MQ0=7;MQRankSum=2.098;QD=8.72;ReadPosRankSum=-0.773;SB=-1.810e+03 GT:AD:DP:GQ:PL 0/1:170,218:390:99:3400,0,2181 chrVI 8990 . G T 797.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.842;DP=411;Dels=0.00;FS=0.449;HaplotypeScore=13.9353;MLEAC=1;MLEAF=0.500;MQ=29.93;MQ0=5;MQRankSum=1.951;QD=1.94;ReadPosRankSum=-1.377;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:325,85:411:99:827,0,4757 chrVI 9079 . G T 371 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=9;QD=14.84;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,24:25:45:404,45,0 chrVI 9106 . T G 1164 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=59;Dels=0.00;FS=17.243;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=6;MQRankSum=1.667;QD=19.73;ReadPosRankSum=1.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1197,141,0 chrVI 9110 . T C 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=10;MQRankSum=-0.551;QD=1.50;ReadPosRankSum=0.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,15:74:99:141,0,942 chrVI 9162 . C T 1877.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.652;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=1;MLEAF=0.500;MQ=26.63;MQ0=38;MQRankSum=-0.777;QD=9.88;ReadPosRankSum=0.881;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:59,130:190:99:1907,0,641 chrVI 9225 . T C 1126 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=28;QD=12.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1159,147,0 chrVI 9286 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.10;MQ0=14;QD=1.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:6:50,6,0 chrVI 9557 . G C 80.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.04;MQ0=81;MQRankSum=0.736;QD=0.93;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,64:87:5:110,0,5 chrVI 10007 . A G 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=2.99;MQ0=291;MQRankSum=0.358;QD=0.10;ReadPosRankSum=0.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,167:296:39:60,0,39 chrVI 10409 . T C 430 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=11.25;MQ0=129;MQRankSum=1.167;QD=1.95;ReadPosRankSum=1.694;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:2,216:221:54:463,54,0 chrVI 10415 . A G 508 filter AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=11.68;MQ0=121;QD=2.32;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,219:219:66:541,66,0 chrVI 10577 . G T 761 filter AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.11;MQ0=152;QD=3.66;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,207:208:93:794,93,0 chrVI 10580 . A G 1066 filter AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.18;MQ0=149;QD=4.87;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:2,217:219:99:1099,132,0 chrVI 10824 . T C 618 filter AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.53;MQ0=144;QD=2.96;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,208:209:81:651,81,0 chrVI 10847 . C T 555 filter AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=10.11;MQ0=152;QD=2.61;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,213:213:72:588,72,0 chrVI 10940 . T C 149.06 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.01;MQ0=89;QD=1.54;SB=-2.494e+01 GT:AD:DP:GQ:PL 1/1:0,96:97:21:182,21,0 chrVI 10948 . A G 117.13 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.09;MQ0=80;QD=1.35;SB=-2.488e+01 GT:AD:DP:GQ:PL 1/1:11,76:87:18:150,18,0 chrVI 11006 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=1;MQRankSum=0.736;QD=2.83;ReadPosRankSum=0.736;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:6:51,6,0 chrVI 11023 . G A 39.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=1;QD=2.10;SB=-5.095e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:72,9,0 chrVI 11034 . A G 136.06 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=1;QD=3.40;SB=-7.407e+01 GT:AD:DP:GQ:PL 1/1:0,39:40:21:169,21,0 chrVI 11064 . A G 367 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=56.5913;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=2;QD=4.22;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:48:400,48,0 chrVI 11107 . C T 586 filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=18.84;MQ0=34;QD=3.53;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,166:166:72:619,72,0 chrVI 11110 . C T 650 filter AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=18.86;MQ0=34;QD=3.85;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:78:683,78,0 chrVI 11258 . C T 66.51 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=4;QD=0.65;SB=-5.285e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:12:99,12,0 chrVI 11277 . T C 2359 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=4.873;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=4;MQRankSum=-0.121;QD=13.40;ReadPosRankSum=1.692;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:2392,282,0 chrVI 11305 . G T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=5.6104;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=3;QD=14.31;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:3964,476,0 chrVI 11356 . G A 3357.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=12.3932;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=61;MQRankSum=-1.076;QD=13.27;ReadPosRankSum=1.586;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,248:253:99:3357,384,0 chrVI 11404 . A G 2103 filter AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=22.7049;MLEAC=2;MLEAF=1.00;MQ=19.13;MQ0=127;QD=7.82;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,265:269:99:2136,258,0 chrVI 11476 . T C 1814.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.881;DP=409;Dels=0.00;FS=31.827;HaplotypeScore=22.5168;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=59;MQRankSum=-0.632;QD=4.44;ReadPosRankSum=-0.064;SB=-6.090e+02 GT:AD:DP:GQ:PL 0/1:199,210:409:99:1844,0,1541 chrVI 11547 . G A 2029 filter AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=14.56;MQ0=195;QD=5.65;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,357:359:99:2062,240,0 chrVI 11581 . T C 1645 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.119;DP=376;Dels=0.00;FS=38.524;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=15.07;MQ0=256;MQRankSum=0.794;QD=4.37;ReadPosRankSum=4.308;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:8,367:376:99:1678,198,0 chrVI 11587 . G T 275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=26.9999;MLEAC=1;MLEAF=0.500;MQ=18.11;MQ0=236;MQRankSum=1.973;QD=0.69;ReadPosRankSum=-1.620;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:328,72:401:99:305,0,1744 chrVI 11611 . C T 4442.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.327;DP=499;Dels=0.00;FS=1.591;HaplotypeScore=13.4510;MLEAC=1;MLEAF=0.500;MQ=20.84;MQ0=190;MQRankSum=-0.697;QD=8.90;ReadPosRankSum=0.974;SB=-2.389e+03 GT:AD:DP:GQ:PL 0/1:106,393:499:99:4442,0,987 chrVI 11614 . C T 1068.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.902;DP=521;Dels=0.00;FS=0.946;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=184;MQRankSum=0.026;QD=2.05;ReadPosRankSum=-1.363;SB=-5.170e+02 GT:AD:DP:GQ:PL 0/1:408,113:521:99:1098,0,4506 chrVI 11650 . C T 14032.01 filter AC=2;AF=1.00;AN=2;DP=687;Dels=0.00;FS=0.000;HaplotypeScore=30.6500;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=74;QD=20.43;SB=-7.485e+03 GT:AD:DP:GQ:PL 1/1:0,685:687:99:14032,1599,0 chrVI 11695 . T C 1843.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.533;DP=656;Dels=0.00;FS=4.239;HaplotypeScore=19.8039;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=132;MQRankSum=0.247;QD=2.81;ReadPosRankSum=-1.598;SB=-9.180e+02 GT:AD:DP:GQ:PL 0/1:470,185:656:99:1873,0,7550 chrVI 11815 . C T 598.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.371;DP=487;Dels=0.00;FS=53.404;HaplotypeScore=3.3576;MLEAC=1;MLEAF=0.500;MQ=14.56;MQ0=218;MQRankSum=-2.738;QD=1.23;ReadPosRankSum=0.139;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:333,152:487:99:628,0,1738 chrVI 11833 . C T 743.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.454;DP=510;Dels=0.00;FS=65.554;HaplotypeScore=9.8138;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=157;MQRankSum=-3.324;QD=1.46;ReadPosRankSum=-1.053;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:339,170:510:99:773,0,2266 chrVI 11885 . T C 821.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.963;DP=495;Dels=0.00;FS=15.995;HaplotypeScore=38.8643;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=94;MQRankSum=-2.495;QD=1.66;ReadPosRankSum=-0.273;SB=-3.320e+02 GT:AD:DP:GQ:PL 0/1:331,157:495:99:851,0,3143 chrVI 11896 . A C 2896.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.542;DP=487;Dels=0.00;FS=5.529;HaplotypeScore=50.0252;MLEAC=1;MLEAF=0.500;MQ=21.79;MQ0=112;MQRankSum=0.669;QD=5.95;ReadPosRankSum=0.260;SB=-1.053e+03 GT:AD:DP:GQ:PL 0/1:146,337:487:99:2926,0,972 chrVI 12001 . A T 812.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.397;DP=477;Dels=0.00;FS=102.971;HaplotypeScore=13.4472;MLEAC=1;MLEAF=0.500;MQ=19.22;MQ0=191;MQRankSum=-1.104;QD=1.70;ReadPosRankSum=4.196;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:302,174:477:99:842,0,2783 chrVI 12085 . A G 202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.633;DP=275;Dels=0.00;FS=42.291;HaplotypeScore=14.4089;MLEAC=1;MLEAF=0.500;MQ=23.34;MQ0=100;MQRankSum=5.579;QD=0.73;ReadPosRankSum=-2.636;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,65:275:99:232,0,1887 chrVI 12112 . C T 1776 filter AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=21.47;MQ0=181;QD=6.34;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,276:280:99:1809,210,0 chrVI 12139 . C T 5422.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=428;Dels=0.00;FS=5.932;HaplotypeScore=16.9108;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=137;MQRankSum=-0.311;QD=12.67;ReadPosRankSum=0.239;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:2,426:428:99:5422,609,0 chrVI 12193 . T C 469.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.706;DP=477;Dels=0.00;FS=35.110;HaplotypeScore=10.5997;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=61;MQRankSum=-7.293;QD=0.98;ReadPosRankSum=-0.679;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:356,117:477:99:499,0,5585 chrVI 12230 . G A 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.609;DP=355;Dels=0.00;FS=80.699;HaplotypeScore=32.2800;MLEAC=1;MLEAF=0.500;MQ=31.99;MQ0=36;MQRankSum=-6.485;QD=0.27;ReadPosRankSum=-0.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:271,83:355:99:126,0,4022 chrVI 12259 . G A 917.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;DP=217;Dels=0.00;FS=7.023;HaplotypeScore=78.0351;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=61;MQRankSum=-0.382;QD=4.23;ReadPosRankSum=-3.197;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,119:217:99:947,0,915 chrVI 12345 . A G 287.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=19.59;MQ0=102;MQRankSum=0.687;QD=1.58;ReadPosRankSum=1.460;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:123,58:182:99:317,0,555 chrVI 12416 . T A 6941.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=327;Dels=0.00;FS=12.117;HaplotypeScore=12.3775;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=5;MQRankSum=2.159;QD=21.23;ReadPosRankSum=3.791;SB=-3.712e+03 GT:AD:DP:GQ:PL 1/1:5,322:327:99:6941,812,0 chrVI 12433 . A G 1120.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;DP=326;Dels=0.00;FS=0.941;HaplotypeScore=10.1662;MLEAC=1;MLEAF=0.500;MQ=36.73;MQ0=0;MQRankSum=-4.496;QD=3.44;ReadPosRankSum=1.972;SB=-6.100e+02 GT:AD:DP:GQ:PL 0/1:235,91:326:99:1150,0,4240 chrVI 12436 . G A 1140.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.802;DP=315;Dels=0.00;FS=3.478;HaplotypeScore=13.9404;MLEAC=1;MLEAF=0.500;MQ=36.62;MQ0=0;MQRankSum=-4.654;QD=3.62;ReadPosRankSum=2.285;SB=-6.510e+02 GT:AD:DP:GQ:PL 0/1:228,87:315:99:1170,0,4263 chrVI 12507 . T C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;DP=77;Dels=0.00;FS=6.709;HaplotypeScore=9.8651;MLEAC=1;MLEAF=0.500;MQ=22.88;MQ0=42;MQRankSum=-0.609;QD=0.21;ReadPosRankSum=-0.609;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:67,8:77:46:46,0,481 chrVI 12555 . T G 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.906;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.35;MQ0=43;MQRankSum=-3.501;QD=1.25;ReadPosRankSum=-4.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,29:95:99:149,0,482 chrVI 12560 . T G 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.748;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=43;MQRankSum=-3.843;QD=2.22;ReadPosRankSum=-4.947;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,39:106:99:265,0,508 chrVI 12566 . G A 313.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.243;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.57;MQ0=43;MQRankSum=-4.441;QD=2.70;ReadPosRankSum=-4.798;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,47:116:99:343,0,519 chrVI 12570 . G A 325.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.88;MQ0=43;MQRankSum=-4.160;QD=2.73;ReadPosRankSum=-3.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,48:119:99:355,0,564 chrVI 12572 . C T 295.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=41;MQRankSum=-5.146;QD=2.48;ReadPosRankSum=-3.012;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,47:119:99:325,0,554 chrVI 12573 . G A 318.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=40;MQRankSum=-4.544;QD=2.69;ReadPosRankSum=-2.941;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,47:118:99:348,0,578 chrVI 12584 . G A 764.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.81;MQ0=37;MQRankSum=3.272;QD=4.96;ReadPosRankSum=2.169;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,77:154:99:794,0,445 chrVI 12588 . G A 495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.360;DP=161;Dels=0.00;FS=2.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.70;MQ0=38;MQRankSum=-3.608;QD=3.07;ReadPosRankSum=-1.533;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:78,81:161:99:525,0,774 chrVI 12622 . A G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=52.5674;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=33;MQRankSum=-1.465;QD=0.10;ReadPosRankSum=3.451;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:157,47:204:50:50,0,2049 chrVI 12624 . A G 566.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.358;DP=201;Dels=0.00;FS=2.006;HaplotypeScore=51.7829;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=32;MQRankSum=-3.875;QD=2.82;ReadPosRankSum=2.384;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:107,94:201:99:596,0,1421 chrVI 12634 . T G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.757;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=49.2733;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=33;MQRankSum=-1.170;QD=0.14;ReadPosRankSum=-3.285;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:148,47:195:58:58,0,1834 chrVI 12648 . C A 222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.079;DP=162;Dels=0.00;FS=5.422;HaplotypeScore=36.6368;MLEAC=1;MLEAF=0.500;MQ=25.53;MQ0=34;MQRankSum=-2.927;QD=1.37;ReadPosRankSum=0.974;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:128,34:162:99:252,0,1247 chrVI 12660 . G C 882.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.481;DP=138;Dels=0.00;FS=4.922;HaplotypeScore=6.8978;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=35;MQRankSum=1.105;QD=6.39;ReadPosRankSum=4.474;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,92:138:99:912,0,340 chrVI 12663 . T C 215.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;DP=113;Dels=0.00;FS=6.309;HaplotypeScore=3.5584;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=34;MQRankSum=-2.366;QD=1.90;ReadPosRankSum=-1.228;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:88,25:113:99:245,0,958 chrVI 12665 . C T 204.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.537;DP=114;Dels=0.00;FS=6.427;HaplotypeScore=3.5584;MLEAC=1;MLEAF=0.500;MQ=23.93;MQ0=35;MQRankSum=-0.423;QD=1.79;ReadPosRankSum=-1.468;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:88,24:114:99:234,0,933 chrVI 12667 . G A 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.880;DP=113;Dels=0.00;FS=6.114;HaplotypeScore=3.7591;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=36;MQRankSum=-1.953;QD=2.12;ReadPosRankSum=-1.572;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:88,25:113:99:269,0,924 chrVI 12668 . T C 832.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.394;DP=110;Dels=0.00;FS=5.813;HaplotypeScore=3.7591;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=36;MQRankSum=1.360;QD=7.56;ReadPosRankSum=2.011;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,85:110:99:862,0,279 chrVI 12671 . C G 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.869;DP=110;Dels=0.00;FS=5.813;HaplotypeScore=4.7485;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=36;MQRankSum=0.320;QD=1.85;ReadPosRankSum=-1.920;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:85,25:110:99:233,0,780 chrVI 12677 . A G 1199 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.5562;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=36;MQRankSum=-0.866;QD=12.36;ReadPosRankSum=1.675;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1232,141,0 chrVI 12679 . C T 748.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.196;DP=96;Dels=0.00;FS=6.323;HaplotypeScore=2.7675;MLEAC=1;MLEAF=0.500;MQ=22.34;MQ0=36;MQRankSum=2.876;QD=7.79;ReadPosRankSum=2.066;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,77:96:99:778,0,113 chrVI 12795 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.65;MQ0=35;QD=0.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:6:52,6,0 chrVI 13252 . T C 740 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.652;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=13.41;MQ0=120;MQRankSum=-0.974;QD=3.23;ReadPosRankSum=4.949;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,218:228:93:773,93,0 chrVI 13276 . A G 1089.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.590;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=21.3998;MLEAC=1;MLEAF=0.500;MQ=13.83;MQ0=183;MQRankSum=3.845;QD=2.79;ReadPosRankSum=1.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,225:391:99:1119,0,172 chrVI 13342 . C T 1107 filter AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.41;MQ0=187;QD=3.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,335:335:99:1140,138,0 chrVI 13396 . C T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.82;MQ0=105;QD=0.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,111:112:6:47,6,0 chrVI 13426 . C T 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;DP=309;Dels=0.00;FS=2.976;HaplotypeScore=13.4510;MLEAC=1;MLEAF=0.500;MQ=8.93;MQ0=243;MQRankSum=0.525;QD=0.61;ReadPosRankSum=-2.043;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:147,162:309:99:218,0,212 chrVI 13483 . G A 1674.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;DP=703;Dels=0.00;FS=11.778;HaplotypeScore=65.6081;MLEAC=1;MLEAF=0.500;MQ=22.96;MQ0=197;MQRankSum=-0.488;QD=2.38;ReadPosRankSum=-1.063;SB=-5.570e+02 GT:AD:DP:GQ:PL 0/1:505,197:703:99:1704,0,5459 chrVI 13528 . C T 3805.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.276;DP=551;Dels=0.00;FS=15.293;HaplotypeScore=38.8862;MLEAC=1;MLEAF=0.500;MQ=23.91;MQ0=124;MQRankSum=1.647;QD=6.91;ReadPosRankSum=-0.602;SB=-1.954e+03 GT:AD:DP:GQ:PL 0/1:243,306:551:99:3805,0,2221 chrVI 13669 . T C 3495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.776;DP=647;Dels=0.00;FS=7.111;HaplotypeScore=26.9843;MLEAC=1;MLEAF=0.500;MQ=22.09;MQ0=181;MQRankSum=2.027;QD=5.40;ReadPosRankSum=0.965;SB=-1.654e+03 GT:AD:DP:GQ:PL 0/1:348,298:647:99:3495,0,3526 chrVI 13997 . G T 1791 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=14;QD=16.43;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:1824,210,0 chrVI 14141 . A G 1608 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=97;Dels=0.00;FS=4.179;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=8;MQRankSum=-0.603;QD=16.58;ReadPosRankSum=1.693;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1641,201,0 chrVI 14248 . A G 673 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=5;MQRankSum=0.274;QD=15.65;ReadPosRankSum=1.641;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:1,42:43:87:706,87,0 chrVI 14343 . G A 1201 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=11;QD=17.16;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1234,135,0 chrVI 14388 . T C 887 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.405;DP=66;Dels=0.00;FS=48.339;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=8;MQRankSum=3.290;QD=13.44;ReadPosRankSum=2.771;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:5,58:66:99:920,111,0 chrVI 14512 . A G 850 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=13;QD=9.14;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,90:93:99:883,105,0 chrVI 14527 . C T 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=146;Dels=0.00;FS=8.040;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=16;MQRankSum=2.173;QD=0.22;ReadPosRankSum=0.017;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,49:146:62:62,0,805 chrVI 14566 . T C 1026.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.740;DP=200;Dels=0.00;FS=1.404;HaplotypeScore=9.9409;MLEAC=1;MLEAF=0.500;MQ=33.47;MQ0=11;MQRankSum=-4.147;QD=5.13;ReadPosRankSum=1.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,99:200:99:1056,0,847 chrVI 14605 . A G 897.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.950;DP=159;Dels=0.00;FS=1.418;HaplotypeScore=18.8160;MLEAC=1;MLEAF=0.500;MQ=37.19;MQ0=17;MQRankSum=5.138;QD=5.64;ReadPosRankSum=3.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,76:159:99:927,0,852 chrVI 14608 . A G 353.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DP=150;Dels=0.00;FS=9.817;HaplotypeScore=19.8076;MLEAC=1;MLEAF=0.500;MQ=38.05;MQ0=16;MQRankSum=-2.988;QD=2.35;ReadPosRankSum=-3.972;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,44:150:99:383,0,1351 chrVI 14635 . A G 1500 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=92;Dels=0.00;FS=10.792;HaplotypeScore=9.9772;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=8;MQRankSum=1.279;QD=16.30;ReadPosRankSum=1.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1533,192,0 chrVI 14640 . C T 131.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;DP=81;Dels=0.00;FS=2.286;HaplotypeScore=5.8393;MLEAC=1;MLEAF=0.500;MQ=34.18;MQ0=10;MQRankSum=-0.426;QD=1.62;ReadPosRankSum=2.320;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,22:81:99:161,0,975 chrVI 14701 . C T 512.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.204;DP=163;Dels=0.00;FS=24.760;HaplotypeScore=13.1915;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=27;MQRankSum=0.878;QD=3.14;ReadPosRankSum=-1.036;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:90,72:163:99:542,0,582 chrVI 14779 . T C 2967.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.555;DP=383;Dels=0.00;FS=5.840;HaplotypeScore=37.4792;MLEAC=1;MLEAF=0.500;MQ=41.14;MQ0=2;MQRankSum=3.345;QD=7.75;ReadPosRankSum=0.826;SB=-1.659e+03 GT:AD:DP:GQ:PL 0/1:189,192:383:99:2997,0,2631 chrVI 14820 . T C 408.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.952;DP=249;Dels=0.00;FS=30.058;HaplotypeScore=46.9453;MLEAC=1;MLEAF=0.500;MQ=45.80;MQ0=1;MQRankSum=-1.938;QD=1.64;ReadPosRankSum=-1.456;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:184,62:249:99:438,0,3240 chrVI 14830 . G A 4093.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=24.9083;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=2;QD=19.77;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4093,468,0 chrVI 14836 . A C 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.525;DP=203;Dels=0.00;FS=78.827;HaplotypeScore=17.9612;MLEAC=1;MLEAF=0.500;MQ=45.42;MQ0=2;MQRankSum=-1.191;QD=0.62;ReadPosRankSum=-2.298;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,37:203:99:156,0,2655 chrVI 14846 . T G 111.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600;DP=180;Dels=0.00;FS=0.722;HaplotypeScore=13.3580;MLEAC=1;MLEAF=0.500;MQ=43.03;MQ0=3;MQRankSum=-3.064;QD=0.62;ReadPosRankSum=-2.476;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:141,38:180:99:141,0,2073 chrVI 14848 . A G 1886.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.3379;MLEAC=1;MLEAF=0.500;MQ=42.60;MQ0=3;MQRankSum=3.313;QD=10.84;ReadPosRankSum=3.147;SB=-8.310e+02 GT:AD:DP:GQ:PL 0/1:37,137:174:99:1916,0,115 chrVI 14899 . C T 406.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;DP=151;Dels=0.00;FS=136.015;HaplotypeScore=6.1724;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=8;MQRankSum=-0.286;QD=2.69;ReadPosRankSum=1.649;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:31,119:151:99:436,0,226 chrVI 14901 . A G 342.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900;DP=151;Dels=0.00;FS=158.780;HaplotypeScore=6.2504;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=8;MQRankSum=-0.342;QD=2.26;ReadPosRankSum=2.328;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:36,115:151:99:372,0,380 chrVI 14908 . G C,T 738.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.710;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=103.3319;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.59;MQ0=8;MQRankSum=-0.570;QD=4.45;ReadPosRankSum=-0.373;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/2:1,40,125:166:99:798,335,269,463,0,415 chrVI 14911 . C T 979 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=105.4536;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=8;QD=5.73;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:1012,117,0 chrVI 14925 . T A 830.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.789;DP=238;Dels=0.00;FS=208.173;HaplotypeScore=9.5696;MLEAC=1;MLEAF=0.500;MQ=37.07;MQ0=7;MQRankSum=0.866;QD=3.49;ReadPosRankSum=-0.418;SB=-7.780e+02 GT:AD:DP:GQ:PL 0/1:76,162:238:99:860,0,524 chrVI 14931 . G A 519.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.768;DP=246;Dels=0.00;FS=223.851;HaplotypeScore=11.1469;MLEAC=1;MLEAF=0.500;MQ=38.09;MQ0=7;MQRankSum=-0.905;QD=2.11;ReadPosRankSum=1.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,78:246:99:549,0,1112 chrVI 14934 . T C 487.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;DP=256;Dels=0.00;FS=233.916;HaplotypeScore=8.9298;MLEAC=1;MLEAF=0.500;MQ=37.94;MQ0=7;MQRankSum=-1.744;QD=1.90;ReadPosRankSum=2.222;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:176,80:256:99:517,0,1247 chrVI 14946 . A G 696.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;DP=295;Dels=0.00;FS=98.450;HaplotypeScore=17.4379;MLEAC=1;MLEAF=0.500;MQ=37.86;MQ0=3;MQRankSum=-1.414;QD=2.36;ReadPosRankSum=0.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,104:295:99:726,0,1914 chrVI 14958 . A T 2350.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.098;DP=337;Dels=0.00;FS=68.203;HaplotypeScore=14.6757;MLEAC=1;MLEAF=0.500;MQ=38.36;MQ0=1;MQRankSum=2.564;QD=6.97;ReadPosRankSum=2.315;SB=-1.459e+03 GT:AD:DP:GQ:PL 0/1:143,194:337:99:2380,0,1105 chrVI 14991 . T A 839.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.595;DP=343;Dels=0.00;FS=15.961;HaplotypeScore=6.6318;MLEAC=1;MLEAF=0.500;MQ=44.03;MQ0=4;MQRankSum=-6.709;QD=2.45;ReadPosRankSum=3.718;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:206,137:343:99:869,0,3404 chrVI 15012 . C T 3378.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.546;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=1;MLEAF=0.500;MQ=45.15;MQ0=4;MQRankSum=6.405;QD=11.45;ReadPosRankSum=-3.189;SB=-1.761e+03 GT:AD:DP:GQ:PL 0/1:102,186:295:99:3378,0,576 chrVI 15030 . C T 500.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.646;DP=243;Dels=0.00;FS=7.648;HaplotypeScore=15.0284;MLEAC=1;MLEAF=0.500;MQ=43.35;MQ0=4;MQRankSum=-5.735;QD=2.06;ReadPosRankSum=-4.089;SB=-2.200e+02 GT:AD:DP:GQ:PL 0/1:159,84:243:99:530,0,2653 chrVI 15279 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.13;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2509,300,0 chrVI 15306 . A G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=0.278;QD=16.85;ReadPosRankSum=1.701;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1920,225,0 chrVI 15309 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=17.83;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1905,216,0 chrVI 15338 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=15.02;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1745,201,0 chrVI 15354 . A G 1661 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=14.83;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1694,201,0 chrVI 15403 . T G 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.424;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.024;QD=19.50;ReadPosRankSum=1.653;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2627,315,0 chrVI 15641 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.36;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3443,387,0 chrVI 15708 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.15;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3278,398,0 chrVI 15765 . T C 2861 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2894,345,0 chrVI 15971 . A T 2607 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.90;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2640,306,0 chrVI 16093 . A G 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.339;QD=19.38;ReadPosRankSum=1.661;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1913,228,0 chrVI 16109 . T C 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=5.077;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-1.598;QD=18.96;ReadPosRankSum=1.698;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1986,234,0 chrVI 16152 . C G 1902 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.61;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1935,231,0 chrVI 16167 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.23;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1825,207,0 chrVI 16170 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.16;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1813,213,0 chrVI 16378 . T A 2216 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.61;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2249,261,0 chrVI 16458 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=105;Dels=0.00;FS=5.699;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.200;QD=20.45;ReadPosRankSum=1.699;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2180,264,0 chrVI 16482 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.55;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2273,267,0 chrVI 16490 . G C 1977 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.4135;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=18.83;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2010,237,0 chrVI 16563 . A G 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.981;QD=16.35;ReadPosRankSum=1.690;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1390,165,0 chrVI 16654 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=8.8608;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.87;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1424,162,0 chrVI 16725 . A G 1234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=71;Dels=0.03;FS=4.075;HaplotypeScore=61.6187;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.577;QD=17.38;ReadPosRankSum=1.682;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1267,153,0 chrVI 16806 . A T 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=5.185;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.137;QD=20.53;ReadPosRankSum=1.697;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2065,240,0 chrVI 16824 . A C 1988 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.68;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2021,246,0 chrVI 16880 . T G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=100;Dels=0.00;FS=2.765;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.234;QD=16.32;ReadPosRankSum=2.401;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1665,201,0 chrVI 16896 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.8519;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.76;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2128,243,0 chrVI 17029 . A C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=3.670;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.577;QD=21.74;ReadPosRankSum=1.710;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3413,399,0 chrVI 17210 . A C 3499.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.5653;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.83;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3499,419,0 chrVI 17252 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.40;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4189,480,0 chrVI 17394 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.0904;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.47;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3460,399,0 chrVI 17399 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=3.336;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.856;QD=18.34;ReadPosRankSum=1.669;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3095,377,0 chrVI 17582 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.66;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3430,390,0 chrVI 17595 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.6746;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=16.03;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2069,243,0 chrVI 17653 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=0.517;QD=19.77;ReadPosRankSum=1.611;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2287,270,0 chrVI 17723 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.22;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2722,315,0 chrVI 17765 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=134;Dels=0.00;FS=2.964;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.266;QD=21.67;ReadPosRankSum=2.413;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2937,353,0 chrVI 17807 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.83;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2936,336,0 chrVI 17963 . C T 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.947;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.262;QD=20.70;ReadPosRankSum=0.785;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3560,402,0 chrVI 17987 . C T 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.102;QD=20.39;ReadPosRankSum=1.170;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3194,372,0 chrVI 18011 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5499;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=17.58;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:2864,336,0 chrVI 18105 . A T 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.070;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.376;QD=21.18;ReadPosRankSum=1.708;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3125,354,0 chrVI 18128 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5363;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.767;QD=18.26;ReadPosRankSum=1.683;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2608,312,0 chrVI 18205 . C T 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.8617;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.198;QD=18.80;ReadPosRankSum=0.113;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3097,366,0 chrVI 18283 . T A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.4430;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.73;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3569,417,0 chrVI 18339 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=16.55;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2317,276,0 chrVI 18345 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.89;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2466,288,0 chrVI 18537 . C A 2571 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.93;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2604,297,0 chrVI 18546 . A G 2456 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.61;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2489,302,0 chrVI 18731 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.77;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2004,234,0 chrVI 18742 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.69;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2108,240,0 chrVI 18810 . G C 2126 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.64;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2159,258,0 chrVI 18856 . A G 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.700;QD=17.90;ReadPosRankSum=1.699;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1913,225,0 chrVI 18862 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.01;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1877,213,0 chrVI 18920 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=17.12;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1694,192,0 chrVI 19068 . A G 2251 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=22.07;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2284,273,0 chrVI 19095 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.85;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2044,240,0 chrVI 19172 . G A 1053 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=13.16;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1086,126,0 chrVI 19177 . T C 1056 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=12.57;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1089,132,0 chrVI 19182 . G C 1074 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=12.79;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1107,129,0 chrVI 19183 . C T 1123 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=13.37;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1156,132,0 chrVI 19196 . C A 1257 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=14.28;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1290,147,0 chrVI 19216 . A G 1431 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=15.73;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1464,174,0 chrVI 19286 . T A 1942 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.58;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1975,225,0 chrVI 19314 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.99;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1838,213,0 chrVI 19362 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=21.19;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2025,228,0 chrVI 19414 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=20.60;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1619,195,0 chrVI 19472 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.58;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1738,210,0 chrVI 19593 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.13;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1697,201,0 chrVI 19604 . A T 1707 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.85;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1740,207,0 chrVI 19674 . A G 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.895;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.456;QD=19.55;ReadPosRankSum=1.687;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1519,183,0 chrVI 19711 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=23.56;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2106,243,0 chrVI 19790 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.24;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2008,231,0 chrVI 19886 . G C 1752 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=17.01;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1785,219,0 chrVI 19923 . T C 1635 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.5521;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=16.35;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1668,198,0 chrVI 19927 . C T 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.5809;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;MQRankSum=-1.351;QD=15.92;ReadPosRankSum=-0.346;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1641,189,0 chrVI 19935 . T A 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=96;Dels=0.00;FS=3.039;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;MQRankSum=-1.142;QD=13.62;ReadPosRankSum=2.373;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1341,159,0 chrVI 19942 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=12.31;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1153,141,0 chrVI 20003 . A G 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.594;QD=19.38;ReadPosRankSum=1.697;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1971,231,0 chrVI 20049 . A G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.647;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.577;QD=21.46;ReadPosRankSum=1.706;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2909,350,0 chrVI 20089 . G T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=22.83;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3311,393,0 chrVI 20103 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=22.02;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3204,380,0 chrVI 20162 . T C 2602 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=22.43;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2635,315,0 chrVI 20188 . A G 2840 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=22.72;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2873,347,0 chrVI 20296 . C A 1972 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=20.98;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2005,237,0 chrVI 20599 . A G 148.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=13.46;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:181,21,0 chrVI 20605 . T C 237 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=13.17;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:270,33,0 chrVI 20719 . C G 552 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;QD=10.04;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:69:585,69,0 chrVI 20729 . T G 365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;MQRankSum=0.766;QD=8.30;ReadPosRankSum=1.652;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,42:44:48:398,48,0 chrVI 20741 . A G 186.01 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=25.5922;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;QD=5.31;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:27:219,27,0 chrVI 20745 . G A 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;MQRankSum=-1.128;QD=1.21;ReadPosRankSum=-2.954;SB=2.03 GT:AD:DP:GQ:PL 1/1:30,8:38:9:78,9,0 chrVI 20752 . A C 65.51 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=2.05;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:98,12,0 chrVI 20756 . A T 98.26 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=3.07;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:15:131,15,0 chrVI 20768 . C T 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=3.21;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:103,12,0 chrVI 20769 . G C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=2.09;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:78,9,0 chrVI 20770 . G A 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=3.39;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:107,12,0 chrVI 20773 . G C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=3.02;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:99,12,0 chrVI 20774 . T C 68.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;MQRankSum=-2.350;QD=2.85;ReadPosRankSum=2.246;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,22:24:12:101,12,0 chrVI 20814 . A T 570 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=11.40;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:69:603,69,0 chrVI 20817 . T C 599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;MQRankSum=-0.738;QD=11.52;ReadPosRankSum=2.308;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:75:632,75,0 chrVI 20921 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.400;QD=20.60;ReadPosRankSum=1.666;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2217,261,0 chrVI 20946 . A G 1577 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=17.52;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1610,198,0 chrVI 20997 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.36;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1447,171,0 chrVI 21024 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.51;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1886,225,0 chrVI 21060 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.70;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3118,366,0 chrVI 21089 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=166;Dels=0.00;FS=6.077;HaplotypeScore=7.6356;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.104;QD=19.93;ReadPosRankSum=2.945;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3309,384,0 chrVI 21228 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=9.3144;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.34;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2914,333,0 chrVI 21267 . A G 3142 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.67;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3175,375,0 chrVI 21408 . G A 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=116;Dels=0.00;FS=3.364;HaplotypeScore=4.6529;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.648;QD=18.25;ReadPosRankSum=1.190;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2150,252,0 chrVI 21411 . C G 2214 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=3.8642;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.77;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2247,264,0 chrVI 21638 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.65;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2934,339,0 chrVI 21795 . C G 3355.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.74;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3355,404,0 chrVI 21813 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.80;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3241,375,0 chrVI 21999 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.9657;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.94;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3550,414,0 chrVI 22014 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.02;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3543,405,0 chrVI 22204 . C G 2936 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=17.69;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:2969,362,0 chrVI 22409 . G T 2594 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=17.07;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2627,312,0 chrVI 22425 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=172;Dels=0.00;FS=9.076;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.538;QD=17.86;ReadPosRankSum=3.367;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:4,167:172:99:3105,374,0 chrVI 22527 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6431;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.70;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3028,351,0 chrVI 22718 . G T 2829 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.78;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2862,333,0 chrVI 22833 . T G 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=143;Dels=0.00;FS=4.771;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.708;QD=19.87;ReadPosRankSum=1.683;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2875,342,0 chrVI 23017 . T C 2093 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2126,260,0 chrVI 23140 . C G 1510 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.87;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1543,186,0 chrVI 23336 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.8148;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.274;QD=19.10;ReadPosRankSum=1.687;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1504,180,0 chrVI 23620 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.07;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3796,441,0 chrVI 23872 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=146;Dels=0.00;FS=4.371;HaplotypeScore=15.4540;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.684;QD=21.60;ReadPosRankSum=1.684;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3186,386,0 chrVI 24134 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3937,462,0 chrVI 24214 . G T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.34;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4847,555,0 chrVI 24251 . T G 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=216;Dels=0.00;FS=6.123;HaplotypeScore=13.9885;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.786;QD=22.00;ReadPosRankSum=2.346;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:4751,558,0 chrVI 24494 . G T 3479.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.71;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3479,396,0 chrVI 24505 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.01;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3134,366,0 chrVI 24574 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.43;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3142,369,0 chrVI 24900 . A T 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.376;QD=22.35;ReadPosRankSum=1.713;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4134,471,0 chrVI 25192 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=17.84;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2102,237,0 chrVI 25195 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=17.88;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2071,234,0 chrVI 25215 . T G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=6.767;HaplotypeScore=92.7848;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=-0.273;QD=16.18;ReadPosRankSum=1.702;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1877,219,0 chrVI 25276 . C A 1242 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.11;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1275,144,0 chrVI 25366 . T C 1233 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=11.2654;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.90;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1266,156,0 chrVI 25514 . T C 1557 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.22;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1590,189,0 chrVI 25547 . T G 1567 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.18;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1600,186,0 chrVI 25711 . T C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=0.433;QD=20.80;ReadPosRankSum=1.624;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1385,165,0 chrVI 25713 . G T 1359 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=20.91;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1392,162,0 chrVI 25722 . G A 1299 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=20.95;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1332,153,0 chrVI 25771 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.69;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1523,174,0 chrVI 25858 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=20.99;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1502,171,0 chrVI 25873 . C T 1184 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=17.41;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1217,144,0 chrVI 25880 . T C 1239 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=17.96;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1272,150,0 chrVI 25898 . A G 874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=4.578;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;MQRankSum=-0.682;QD=13.24;ReadPosRankSum=1.680;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:907,108,0 chrVI 25946 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=10.63;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:894,102,0 chrVI 25963 . A G 1024 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=11.77;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1057,126,0 chrVI 25965 . T A 1004 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=11.28;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1037,120,0 chrVI 25966 . A T 916 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=10.29;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:949,111,0 chrVI 26058 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=21.16;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2742,321,0 chrVI 26127 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=22.45;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2929,345,0 chrVI 26156 . G T 2352 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=82.7640;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=21.00;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2385,282,0 chrVI 26216 . T C 2002 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=18.20;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2035,246,0 chrVI 26236 . T C 1907 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.70;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1940,231,0 chrVI 26264 . G C 2147 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=17.60;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2180,269,0 chrVI 26277 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=18.99;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2426,282,0 chrVI 26326 . G A 2108 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=19.34;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2141,249,0 chrVI 26328 . C T 1961 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=18.33;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1994,243,0 chrVI 26331 . G A 1994 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=18.46;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2027,240,0 chrVI 26443 . C G 2686 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=21.49;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2719,321,0 chrVI 26453 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=19.97;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2509,297,0 chrVI 26487 . T C 1599 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=17.19;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1632,200,0 chrVI 26489 . G T 1561 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=17.34;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1594,192,0 chrVI 26534 . A G 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;MQRankSum=-0.642;QD=16.15;ReadPosRankSum=1.668;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:905,117,0 chrVI 26540 . G C 698 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=16.23;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:93:731,93,0 chrVI 26606 . T C 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=2.98;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:46,6,0 chrVI 26608 . T A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=5.42;ReadPosRankSum=0.742;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:9:70,9,0 chrVI 26612 . A T 198.01 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=3.54;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:27:231,27,0 chrVI 26636 . A G 741 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=8.62;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:93:774,93,0 chrVI 26713 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.40;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1910,222,0 chrVI 26765 . A G 974 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=13.16;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1007,126,0 chrVI 26767 . G C 961 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=13.16;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:994,123,0 chrVI 26773 . G A 704 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;QD=8.28;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:90:737,90,0 chrVI 26781 . A G 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=5.828;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;MQRankSum=1.220;QD=11.25;ReadPosRankSum=1.653;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1023,126,0 chrVI 26786 . A G 1052 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=11.56;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1085,135,0 chrVI 26793 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=11.26;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1114,138,0 chrVI 26870 . A T 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=110;Dels=0.00;FS=11.242;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;MQRankSum=0.734;QD=21.14;ReadPosRankSum=2.936;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2358,270,0 chrVI 26889 . A G 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=4.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=1.312;QD=20.74;ReadPosRankSum=1.697;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2086,243,0 chrVI 27063 . G T 3202 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.9063;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.79;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3235,384,0 chrVI 27102 . G C 2665 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=17.77;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2698,326,0 chrVI 27110 . T C 2623 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=16.50;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2656,318,0 chrVI 27130 . A G 2427 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=14.98;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2460,300,0 chrVI 27212 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.061;DP=165;Dels=0.00;FS=18.634;HaplotypeScore=12.4321;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=0.170;QD=19.54;ReadPosRankSum=4.148;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:6,159:165:99:3257,392,0 chrVI 27436 . T A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.67;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3835,441,0 chrVI 27484 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.67;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3900,450,0 chrVI 27506 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.115;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.0783;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.573;QD=21.86;ReadPosRankSum=0.737;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3804,422,0 chrVI 27592 . A G 2914 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.96;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2947,345,0 chrVI 27594 . C A 3020 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.97;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3053,348,0 chrVI 27630 . C G 2553 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=17.98;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2586,317,0 chrVI 27638 . G T 2711 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.3017;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.95;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2744,315,0 chrVI 27761 . A G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.910;QD=20.07;ReadPosRankSum=1.682;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2843,336,0 chrVI 27763 . T C 2809 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.36;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2842,347,0 chrVI 27810 . C T 2257 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.29;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2290,258,0 chrVI 28033 . T G 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=106;Dels=0.00;FS=2.831;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.058;QD=19.16;ReadPosRankSum=2.403;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2064,252,0 chrVI 28062 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.73;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2500,297,0 chrVI 28170 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.89;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3032,345,0 chrVI 28318 . A G 2931 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.71;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2964,348,0 chrVI 28390 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.21;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3236,381,0 chrVI 28549 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.85;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3359,384,0 chrVI 28601 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.48;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3329,387,0 chrVI 28638 . A G 3167 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.30;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3200,372,0 chrVI 28662 . T A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.7419;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.04;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3346,390,0 chrVI 28792 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.72;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3074,351,0 chrVI 28916 . T C 2860 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.72;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2893,342,0 chrVI 29012 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.04;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2378,270,0 chrVI 29134 . A T 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=148;Dels=0.00;FS=2.699;HaplotypeScore=10.5693;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.058;QD=21.74;ReadPosRankSum=2.284;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3250,375,0 chrVI 29242 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2744,327,0 chrVI 29346 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1035;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=20.99;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2426,288,0 chrVI 29526 . A G 2812 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.50;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2845,336,0 chrVI 29691 . G T 2572 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.60;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2605,300,0 chrVI 29714 . T C 2699 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.94;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2732,318,0 chrVI 29751 . T A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.37;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3252,369,0 chrVI 29945 . A G 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=81;Dels=0.00;FS=3.063;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-1.649;QD=20.75;ReadPosRankSum=2.327;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1714,204,0 chrVI 29957 . T G 1541 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=21.70;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1574,189,0 chrVI 29993 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=21.21;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1242,147,0 chrVI 30041 . A G 1114 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=21.42;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1147,138,0 chrVI 30044 . C T 1114 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=21.02;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1147,132,0 chrVI 30064 . G T 1478 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=22.39;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1511,165,0 chrVI 30085 . T C 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.769;DP=70;Dels=0.00;FS=21.111;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;MQRankSum=-3.349;QD=16.84;ReadPosRankSum=1.655;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:4,64:70:99:1212,109,0 chrVI 30249 . A T 2499 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=19.99;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2532,291,0 chrVI 30263 . A T 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=3.903;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=-0.025;QD=20.43;ReadPosRankSum=1.707;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2914,336,0 chrVI 30312 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=18.01;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2140,261,0 chrVI 30348 . T C 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.068;DP=139;Dels=0.00;FS=9.188;HaplotypeScore=7.3344;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.208;QD=20.12;ReadPosRankSum=3.383;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:2830,339,0 chrVI 30393 . G T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.48;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3415,393,0 chrVI 30403 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.535;QD=19.76;ReadPosRankSum=1.711;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3234,392,0 chrVI 30510 . G C 2271 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.42;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2304,273,0 chrVI 30544 . A T 2473 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.32;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2506,300,0 chrVI 30616 . T C 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=10.190;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.824;QD=20.65;ReadPosRankSum=2.362;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2367,282,0 chrVI 30827 . C G 1510 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.61;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1543,186,0 chrVI 30834 . T A 1378 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.90;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1411,168,0 chrVI 30954 . T A 2299 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=7.0642;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.35;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2332,267,0 chrVI 30986 . C T 1228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=84;Dels=0.00;FS=3.413;HaplotypeScore=5.7659;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.987;QD=14.62;ReadPosRankSum=0.329;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1261,144,0 chrVI 31117 . T A 1733 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.44;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1766,207,0 chrVI 31135 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.20;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1912,213,0 chrVI 31343 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.51;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1489,180,0 chrVI 31360 . G T 1216 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.71;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1249,147,0 chrVI 31763 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.04;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3294,375,0 chrVI 31880 . C A 2645 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.2408;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.66;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2678,306,0 chrVI 31946 . A C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.468;QD=20.46;ReadPosRankSum=1.706;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2754,330,0 chrVI 32009 . T C 1768 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.7084;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=17.50;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1801,222,0 chrVI 32017 . A T 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.603;QD=17.11;ReadPosRankSum=2.376;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1744,198,0 chrVI 32162 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.52;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2099,240,0 chrVI 32207 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3282;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.84;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2226,255,0 chrVI 32241 . T G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=101;Dels=0.00;FS=5.268;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.531;QD=21.07;ReadPosRankSum=3.248;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:4,97:101:99:2161,258,0 chrVI 32259 . T G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.411;QD=19.96;ReadPosRankSum=1.700;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2189,258,0 chrVI 32447 . G T 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.0036;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.506;QD=22.01;ReadPosRankSum=0.961;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2652,312,0 chrVI 32485 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.4015;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=20.67;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2183,255,0 chrVI 32539 . T C 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.309;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.253;QD=20.62;ReadPosRankSum=1.693;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1868,219,0 chrVI 32582 . A G 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.848;QD=18.62;ReadPosRankSum=1.695;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1783,210,0 chrVI 32620 . G T 2032 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=22.09;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2065,237,0 chrVI 32663 . G C 1677 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=20.70;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1710,204,0 chrVI 32698 . G A 1043 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=20.45;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1076,129,0 chrVI 32699 . C G 1011 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=20.22;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1044,126,0 chrVI 32712 . C T 1062 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=21.67;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1095,126,0 chrVI 32722 . G A 865 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=19.66;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:898,105,0 chrVI 32776 . T C 947 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=15.52;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:980,117,0 chrVI 32779 . T G 958 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;QD=16.52;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:991,117,0 chrVI 32781 . G C 979 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=16.32;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1012,120,0 chrVI 32800 . C T 1002 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=14.96;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1035,120,0 chrVI 32808 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=14.58;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1185,144,0 chrVI 32868 . C G 929 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;QD=11.76;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:962,117,0 chrVI 32882 . C G 1021 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=13.09;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1054,129,0 chrVI 32886 . C A 1037 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=13.64;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1070,126,0 chrVI 32901 . C T 765 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=11.42;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:96:798,96,0 chrVI 32918 . G A 789 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=11.43;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:822,99,0 chrVI 32931 . T G 571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;MQRankSum=-1.604;QD=10.57;ReadPosRankSum=1.540;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:75:604,75,0 chrVI 32955 . A C 571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;MQRankSum=1.622;QD=9.06;ReadPosRankSum=1.677;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:75:604,75,0 chrVI 32964 . C T 880 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=56.0575;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=13.33;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:913,108,0 chrVI 33008 . A T 1579 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=18.80;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1612,189,0 chrVI 33158 . T A 1870 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=21.25;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1903,222,0 chrVI 33177 . C A 1467 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=18.11;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1500,177,0 chrVI 33187 . A C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=78;Dels=0.00;FS=6.175;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=1.356;QD=17.28;ReadPosRankSum=2.909;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:3,74:78:99:1381,168,0 chrVI 33222 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=18.15;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1485,174,0 chrVI 33267 . T A 1688 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.4313;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.64;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1721,195,0 chrVI 33328 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=17.90;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1626,192,0 chrVI 33340 . T C 1488 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=16.53;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1521,183,0 chrVI 33496 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.38;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2025,231,0 chrVI 33689 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3502,399,0 chrVI 33797 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=2.828;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.583;QD=20.79;ReadPosRankSum=2.344;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2943,348,0 chrVI 33886 . A C 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=206;Dels=0.00;FS=7.345;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.550;QD=19.52;ReadPosRankSum=2.425;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,200:206:99:4021,494,0 chrVI 34169 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.209;QD=21.24;ReadPosRankSum=1.714;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4120,494,0 chrVI 34608 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2070,237,0 chrVI 34667 . T A 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.847;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.161;QD=19.73;ReadPosRankSum=1.625;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1947,234,0 chrVI 34741 . T G 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.091;DP=104;Dels=0.00;FS=2.960;HaplotypeScore=6.9782;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=2.020;QD=18.83;ReadPosRankSum=0.323;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:1991,243,0 chrVI 34967 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.6546;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.608;QD=21.58;ReadPosRankSum=1.711;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3625,429,0 chrVI 35248 . G C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.12;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3747,438,0 chrVI 35261 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=17.91;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3492,422,0 chrVI 35514 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2156;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.189;QD=20.46;ReadPosRankSum=1.664;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3164,372,0 chrVI 35652 . A C 2698 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.74;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2731,330,0 chrVI 35657 . G T 2732 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.97;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2765,318,0 chrVI 35661 . C T 2693 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.83;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2726,315,0 chrVI 35729 . C T 2135 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=17.36;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2168,246,0 chrVI 35789 . A G 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.131;QD=16.91;ReadPosRankSum=1.706;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2282,278,0 chrVI 35905 . A C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.696;QD=18.65;ReadPosRankSum=1.696;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1861,225,0 chrVI 35915 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=17.19;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1752,204,0 chrVI 35940 . A T 2118 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.61;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2151,249,0 chrVI 35993 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.94;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2232,255,0 chrVI 36224 . A T 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=149;Dels=0.00;FS=10.468;HaplotypeScore=14.3150;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.223;QD=22.45;ReadPosRankSum=2.417;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3345,390,0 chrVI 36288 . T C 3194 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.88;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3227,375,0 chrVI 36301 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.91;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3040,351,0 chrVI 36304 . A T 2904 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.23;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2937,342,0 chrVI 36358 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=16.68;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2301,273,0 chrVI 36423 . T G 3326.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.2793;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.05;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3326,401,0 chrVI 36521 . T A 2400 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.35;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2433,285,0 chrVI 36593 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.46;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1731,204,0 chrVI 36602 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=2.6837;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.875;QD=19.74;ReadPosRankSum=1.695;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1869,219,0 chrVI 36660 . T C 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=8.2135;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.054;QD=17.22;ReadPosRankSum=1.694;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1617,195,0 chrVI 36739 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=86;Dels=0.00;FS=3.062;HaplotypeScore=9.8815;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-2.044;QD=22.24;ReadPosRankSum=2.392;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1946,231,0 chrVI 36806 . C G 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1542;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.639;QD=15.62;ReadPosRankSum=1.685;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1189,144,0 chrVI 36807 . T C 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1542;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.187;QD=15.59;ReadPosRankSum=1.685;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1187,144,0 chrVI 36925 . G T 2290 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.1137;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.81;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2323,276,0 chrVI 36983 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1904;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.97;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2814,321,0 chrVI 37078 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.23;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2745,327,0 chrVI 37375 . C A 2851 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=14.3266;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.27;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2884,330,0 chrVI 37482 . T C 2348 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=18.34;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2381,279,0 chrVI 37497 . A G 2395 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=18.42;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2428,288,0 chrVI 37504 . T C 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;MQRankSum=-0.063;QD=16.93;ReadPosRankSum=1.707;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2352,279,0 chrVI 37537 . A G 1867 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=14.04;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1900,222,0 chrVI 37545 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=13.24;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:1900,216,0 chrVI 37552 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=12.57;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1856,222,0 chrVI 38086 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=7.4091;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.04;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2858,339,0 chrVI 38102 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.39;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3049,357,0 chrVI 38296 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.73;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3056,342,0 chrVI 38359 . T C 2445 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.21;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2478,294,0 chrVI 38588 . G T 1611 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.14;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1644,189,0 chrVI 38596 . A G 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.304;QD=17.45;ReadPosRankSum=2.386;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1377,165,0 chrVI 38610 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=16.29;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1222,147,0 chrVI 38681 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=6.284;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.284;QD=21.01;ReadPosRankSum=1.691;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1840,222,0 chrVI 38909 . A G 2164 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.85;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2197,264,0 chrVI 38918 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.98;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1931,228,0 chrVI 38974 . C A 1608 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.87;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1641,192,0 chrVI 39275 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.16;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1853,225,0 chrVI 39419 . G T 2026 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.33;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2059,240,0 chrVI 39488 . G A 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.635;QD=22.17;ReadPosRankSum=0.837;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2693,312,0 chrVI 39674 . C G 2900 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.73;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2933,351,0 chrVI 39690 . T G 2721 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.77;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2754,338,0 chrVI 40189 . A G 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.693;QD=20.24;ReadPosRankSum=1.683;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2867,330,0 chrVI 40205 . C G 2720 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.09;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2753,330,0 chrVI 40232 . A C 2139 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.27;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2172,252,0 chrVI 40564 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3231,372,0 chrVI 40603 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=155;Dels=0.00;FS=6.453;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.024;QD=20.18;ReadPosRankSum=2.418;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3161,372,0 chrVI 40771 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2499,285,0 chrVI 40841 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.62;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2022,237,0 chrVI 41032 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.21;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2298,264,0 chrVI 41152 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.26;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2505,291,0 chrVI 41461 . A C 2560 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2593,309,0 chrVI 41688 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2666,309,0 chrVI 41722 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2114,246,0 chrVI 41791 . A G 1702 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.79;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1735,204,0 chrVI 42233 . A G 2625 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.52;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2658,312,0 chrVI 42308 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2232,255,0 chrVI 42346 . A G 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.615;QD=20.61;ReadPosRankSum=1.658;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1950,237,0 chrVI 42633 . G A 771 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=7.1461;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.29;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:93:804,93,0 chrVI 42668 . A C 801 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.65;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:834,99,0 chrVI 42690 . T C 929 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=18.96;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:962,114,0 chrVI 42696 . G T 977 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.94;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1010,114,0 chrVI 42701 . C A 877 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.90;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:910,105,0 chrVI 42743 . A G 1157 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.61;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1190,141,0 chrVI 42943 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.26;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2237,258,0 chrVI 43072 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=123;Dels=0.00;FS=3.716;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.068;QD=21.94;ReadPosRankSum=1.703;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2732,321,0 chrVI 43123 . T C 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.0571;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.621;QD=20.45;ReadPosRankSum=1.621;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2610,312,0 chrVI 43673 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.97;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2284,261,0 chrVI 43907 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.69;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2847,339,0 chrVI 43988 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3549,405,0 chrVI 44192 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=140;Dels=0.00;FS=7.052;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.027;QD=21.11;ReadPosRankSum=2.361;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2989,354,0 chrVI 44668 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.6065;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=22.38;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3962,459,0 chrVI 44748 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.54;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4005,476,0 chrVI 44763 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.643;DP=201;Dels=0.00;FS=2.157;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.503;QD=17.25;ReadPosRankSum=1.075;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:3467,384,0 chrVI 44772 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.683;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=-0.132;QD=17.47;ReadPosRankSum=1.385;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3425,370,0 chrVI 44835 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.4693;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=15.03;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:3250,398,0 chrVI 44841 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=16.88;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3460,402,0 chrVI 44874 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.01;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=16.01;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3395,390,0 chrVI 44876 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.296;QD=15.30;ReadPosRankSum=2.817;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:3289,387,0 chrVI 45006 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.12;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3908,456,0 chrVI 45082 . T C 5061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=236;Dels=0.00;FS=2.866;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=1.077;QD=21.44;ReadPosRankSum=2.429;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5061,605,0 chrVI 45201 . A G 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.198;QD=20.85;ReadPosRankSum=1.686;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4753,558,0 chrVI 45217 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.47;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4422,522,0 chrVI 45521 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3764,435,0 chrVI 45740 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.17;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3726,441,0 chrVI 45870 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.97;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3514,405,0 chrVI 45896 . C A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.2335;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=18.51;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3253,372,0 chrVI 45926 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=14.09;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2456,282,0 chrVI 45929 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=179;Dels=0.00;FS=6.084;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-1.770;QD=13.23;ReadPosRankSum=2.927;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:2402,282,0 chrVI 45941 . T C 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=185;Dels=0.00;FS=5.924;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=-0.658;QD=13.26;ReadPosRankSum=2.962;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:2487,294,0 chrVI 46161 . A G 5819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.820;QD=21.79;ReadPosRankSum=1.706;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:1,265:267:99:5819,678,0 chrVI 46185 . T C 5348.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.88;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5348,656,0 chrVI 46302 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.74;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4327,492,0 chrVI 46380 . A G 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.330;QD=20.36;ReadPosRankSum=1.687;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3209,386,0 chrVI 46518 . G C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3562,420,0 chrVI 46635 . G A 4284.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.53;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4284,492,0 chrVI 46652 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.31;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3899,450,0 chrVI 46741 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.03;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3680,420,0 chrVI 46872 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.28;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3767,432,0 chrVI 46998 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.7069;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.40;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3424,410,0 chrVI 47804 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=187;Dels=0.00;FS=9.111;HaplotypeScore=11.9791;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.807;QD=19.90;ReadPosRankSum=3.384;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:4,181:187:99:3722,449,0 chrVI 48166 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.62;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3870,438,0 chrVI 48240 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.9316;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=21.21;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3711,423,0 chrVI 48263 . C T 4155.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=21.09;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4155,471,0 chrVI 48454 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;QD=17.75;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3532,414,0 chrVI 48462 . C G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=16.64;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3344,401,0 chrVI 48470 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=3.451;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;MQRankSum=1.222;QD=14.48;ReadPosRankSum=1.714;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:2886,356,0 chrVI 48473 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=14.41;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:2916,339,0 chrVI 48487 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=4.142;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;MQRankSum=-1.537;QD=14.24;ReadPosRankSum=1.702;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:3289,390,0 chrVI 48503 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=15.12;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:3629,434,0 chrVI 48510 . C A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=16.16;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:3846,441,0 chrVI 48613 . A G 3161 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=168;Dels=0.00;FS=2.570;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=-1.533;QD=18.82;ReadPosRankSum=2.958;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3194,386,0 chrVI 48620 . A T 2993 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=18.14;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3026,354,0 chrVI 48621 . A G 2836 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=165;Dels=0.00;FS=2.570;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;MQRankSum=-1.811;QD=17.19;ReadPosRankSum=2.933;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:2869,350,0 chrVI 48653 . G T 3030 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=18.82;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3063,363,0 chrVI 48712 . T C 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.8836;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=-0.038;QD=20.40;ReadPosRankSum=1.707;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2868,342,0 chrVI 49201 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2542,306,0 chrVI 49258 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.54;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2949,348,0 chrVI 49483 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3862,435,0 chrVI 49819 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=128;Dels=0.00;FS=4.078;HaplotypeScore=5.2427;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.047;QD=20.35;ReadPosRankSum=2.238;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2638,309,0 chrVI 49820 . C T 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=6.549;HaplotypeScore=5.2427;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.621;QD=20.49;ReadPosRankSum=1.415;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2717,315,0 chrVI 50137 . G A 5518.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.99;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5518,630,0 chrVI 50410 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=154;Dels=0.00;FS=3.155;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.962;QD=20.60;ReadPosRankSum=1.642;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3206,372,0 chrVI 50488 . G T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0976;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.96;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3668,443,0 chrVI 50647 . A G 2942 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.29;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2975,354,0 chrVI 50680 . A G 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.155;QD=19.55;ReadPosRankSum=1.710;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3103,372,0 chrVI 50685 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=173;Dels=0.00;FS=7.428;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-2.148;QD=17.72;ReadPosRankSum=2.306;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:3098,363,0 chrVI 50740 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=20.48;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3870,453,0 chrVI 50825 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.51;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2689,306,0 chrVI 50932 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.73;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3442,387,0 chrVI 51009 . T A 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.187;DP=117;Dels=0.00;FS=2.167;HaplotypeScore=3.4009;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.247;QD=16.60;ReadPosRankSum=3.093;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:5,112:117:99:1975,228,0 chrVI 51012 . A G 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=110;Dels=0.00;FS=2.153;HaplotypeScore=7.2116;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.228;QD=17.15;ReadPosRankSum=3.597;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:5,103:110:99:1919,225,0 chrVI 51067 . A G 1857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=4.089;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.178;QD=18.57;ReadPosRankSum=1.663;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1890,231,0 chrVI 51128 . A G 1790 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.31;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1823,222,0 chrVI 51193 . G T 1486 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.08;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1519,177,0 chrVI 51257 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.16;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2271,264,0 chrVI 51333 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.22;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2655,318,0 chrVI 51370 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.45;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2542,303,0 chrVI 51603 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.51;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2945,351,0 chrVI 51748 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2002;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3322,378,0 chrVI 52024 . A T 4162.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.8218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.45;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4162,489,0 chrVI 52738 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2482,294,0 chrVI 52838 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.87;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1034,120,0 chrVI 53077 . T A 247 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.269e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:33:280,33,0 chrVI 53142 . C T 353 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.06;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:45:386,45,0 chrVI 53398 . A G 3170 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3203,395,0 chrVI 54858 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.96;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1636,192,0 chrVI 55021 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.80;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1406,162,0 chrVI 55242 . C T 1707 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.08;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1740,204,0 chrVI 55480 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.8296;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=22.19;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4704,560,0 chrVI 55864 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.752;DP=228;Dels=0.00;FS=11.930;HaplotypeScore=15.3171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.443;QD=18.21;ReadPosRankSum=5.063;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:9,218:228:99:4153,500,0 chrVI 56533 . C G 4390.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.84;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4390,524,0 chrVI 56854 . G A 4658.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.2303;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.56;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:4658,549,0 chrVI 57870 . A G 141.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.747;QD=17.63;ReadPosRankSum=0.747;SB=-7.456e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:21:174,21,0 chrVI 58110 . C T 1038 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=21.18;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1071,123,0 chrVI 58170 . T C 880 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=14.92;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:913,108,0 chrVI 58173 . C T 863 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=14.63;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:896,105,0 chrVI 58189 . T C 741 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=13.47;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:774,93,0 chrVI 58190 . T A 771 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=14.02;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:804,93,0 chrVI 58238 . C T 537 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=7.90;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:66:570,66,0 chrVI 58258 . T C 783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;MQRankSum=-1.433;QD=9.67;ReadPosRankSum=1.647;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:96:816,96,0 chrVI 58264 . A G 774 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=9.33;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:807,99,0 chrVI 58277 . A G 954 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=10.26;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:987,117,0 chrVI 58295 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=12.21;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1352,156,0 chrVI 58625 . T C 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.130;QD=20.82;ReadPosRankSum=1.694;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1948,225,0 chrVI 58653 . T C 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=93;Dels=0.00;FS=3.016;HaplotypeScore=6.3803;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.663;QD=18.46;ReadPosRankSum=2.396;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,89:93:99:1750,210,0 chrVI 58715 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=132;Dels=0.00;FS=4.907;HaplotypeScore=12.1251;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.666;QD=19.43;ReadPosRankSum=1.705;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2598,317,0 chrVI 58749 . T C 3105 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.71;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3138,377,0 chrVI 58952 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=180;Dels=0.00;FS=3.011;HaplotypeScore=19.3343;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.007;QD=18.34;ReadPosRankSum=2.422;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:3302,404,0 chrVI 58994 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.315;QD=20.22;ReadPosRankSum=1.714;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:3902,473,0 chrVI 59129 . T C 2919 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.80;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2952,348,0 chrVI 59306 . A C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.414;QD=20.37;ReadPosRankSum=2.169;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2885,345,0 chrVI 59811 . C A 1489 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.40;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1522,177,0 chrVI 61005 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.61;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2486,294,0 chrVI 61106 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.25;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3170,354,0 chrVI 61214 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=3.581;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.546;QD=21.15;ReadPosRankSum=1.679;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2782,327,0 chrVI 61277 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.095;QD=19.99;ReadPosRankSum=1.685;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2971,348,0 chrVI 61488 . A G 4787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=211;Dels=0.00;FS=10.612;HaplotypeScore=15.2229;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.929;QD=22.69;ReadPosRankSum=2.900;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:4787,555,0 chrVI 61610 . C T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.11;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4182,471,0 chrVI 61904 . T C 3186 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=17.2375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3219,389,0 chrVI 62459 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3185,363,0 chrVI 63014 . C T 1039 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1072,126,0 chrVI 63394 . C G 3605.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.1246;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.81;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3605,443,0 chrVI 64252 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1682,209,0 chrVI 64937 . G A 1707 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.61;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1740,198,0 chrVI 65029 . T A 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=62;Dels=0.00;FS=10.150;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.984;QD=21.94;ReadPosRankSum=2.788;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:3,59:62:99:1393,162,0 chrVI 65065 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.10;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1721,207,0 chrVI 65094 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2082;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.65;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2090,237,0 chrVI 65160 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.40;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2089,240,0 chrVI 65183 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.54;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2354,270,0 chrVI 65298 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=120;Dels=0.00;FS=2.581;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.009;QD=22.10;ReadPosRankSum=2.942;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2685,321,0 chrVI 65326 . T G 2679 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.93;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2712,327,0 chrVI 65504 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.55;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3177,377,0 chrVI 65534 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.190;QD=20.72;ReadPosRankSum=1.055;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,178:183:99:3791,461,0 chrVI 65802 . T G 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=130;Dels=0.00;FS=3.736;HaplotypeScore=15.9844;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.426;QD=18.44;ReadPosRankSum=1.705;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2430,288,0 chrVI 65956 . A G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.559;QD=19.86;ReadPosRankSum=1.703;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2456,291,0 chrVI 66118 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=4.041;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.707;QD=21.08;ReadPosRankSum=1.708;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3026,357,0 chrVI 66151 . A G 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=143;Dels=0.00;FS=7.760;HaplotypeScore=13.7067;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.473;QD=20.61;ReadPosRankSum=2.397;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2980,354,0 chrVI 66190 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.046;DP=168;Dels=0.01;FS=10.181;HaplotypeScore=18.8741;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.245;QD=22.97;ReadPosRankSum=4.123;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:6,161:167:99:3859,456,0 chrVI 66355 . C G 3624.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.83;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3624,443,0 chrVI 66664 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.43;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2709,312,0 chrVI 66666 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.80;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2646,300,0 chrVI 66759 . A G 2497 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8158;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.36;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2530,297,0 chrVI 66782 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.89;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2853,318,0 chrVI 67330 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.5847;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.84;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,178:183:99:3631,429,0 chrVI 67471 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.79;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2839,321,0 chrVI 67487 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.85;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2559,294,0 chrVI 67732 . C A 2382 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.53;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2415,279,0 chrVI 67810 . A G 2658 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.29;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2691,324,0 chrVI 68194 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.302;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9369;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.054;QD=22.84;ReadPosRankSum=-1.065;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3678,426,0 chrVI 68215 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=183;Dels=0.00;FS=14.031;HaplotypeScore=9.0540;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.192;QD=20.81;ReadPosRankSum=2.698;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:3808,450,0 chrVI 68320 . A C 2671 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=10.1864;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=16.91;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2704,321,0 chrVI 68323 . A G 2610 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=164;Dels=0.00;FS=9.172;HaplotypeScore=9.3108;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.027;QD=15.91;ReadPosRankSum=3.096;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:4,155:164:99:2643,318,0 chrVI 68326 . A G 2595 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=163;Dels=0.00;FS=9.442;HaplotypeScore=9.8276;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=1.180;QD=15.92;ReadPosRankSum=2.895;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:2628,312,0 chrVI 68375 . A G 3134 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8924;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=17.61;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3167,372,0 chrVI 68496 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.3371;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.77;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3392,387,0 chrVI 68557 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.76;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3036,348,0 chrVI 68659 . A G 1456 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=0.138;QD=17.98;ReadPosRankSum=2.913;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1489,174,0 chrVI 68665 . A G 1483 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=17.87;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1516,177,0 chrVI 68669 . G A 1499 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.72;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1532,174,0 chrVI 68671 . T G 1450 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=7.404;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=0.202;QD=18.83;ReadPosRankSum=1.687;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1483,177,0 chrVI 68758 . T C 878 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.68;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,45:47:99:911,108,0 chrVI 68816 . A G 296 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=15.58;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:329,39,0 chrVI 68825 . A G 297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.520;QD=14.85;ReadPosRankSum=1.561;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,19:20:39:330,39,0 chrVI 68888 . A G 229 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.08;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:262,30,0 chrVI 68994 . A G 191.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.10;SB=-2.499e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:224,27,0 chrVI 69022 . G A 293 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.53;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:326,39,0 chrVI 69092 . A T 587 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=10.87;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:72:620,72,0 chrVI 69107 . A G 1128 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=15.24;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1161,141,0 chrVI 69214 . T G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.190;QD=23.08;ReadPosRankSum=1.690;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1949,231,0 chrVI 69262 . C T 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DP=88;Dels=0.00;FS=4.821;HaplotypeScore=4.9154;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=1.457;QD=22.05;ReadPosRankSum=1.417;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1973,225,0 chrVI 69412 . A G 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.707;QD=21.86;ReadPosRankSum=1.681;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3006,360,0 chrVI 69547 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.98;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2500,305,0 chrVI 69559 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.84;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2464,288,0 chrVI 69817 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.8862;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.855;QD=18.95;ReadPosRankSum=1.710;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2951,354,0 chrVI 70289 . T C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=3.762;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.599;QD=20.92;ReadPosRankSum=1.700;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2313,279,0 chrVI 70372 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.25;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2902,333,0 chrVI 70402 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.561;QD=19.27;ReadPosRankSum=1.708;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2788,333,0 chrVI 70612 . T A 2330 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.38;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2363,282,0 chrVI 70639 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.91;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2224,258,0 chrVI 70747 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.66;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2373,285,0 chrVI 70774 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4525;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.71;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2435,288,0 chrVI 70827 . G A 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.8565;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.853;QD=17.68;ReadPosRankSum=2.320;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,112:117:99:2101,243,0 chrVI 70828 . A G 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=118;Dels=0.01;FS=6.366;HaplotypeScore=6.6452;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.477;QD=17.21;ReadPosRankSum=2.259;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2064,243,0 chrVI 71045 . G C 2601 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.23;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2634,317,0 chrVI 71140 . A C 2374 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.64;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2407,288,0 chrVI 71375 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.2515;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.64;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3808,432,0 chrVI 71470 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.40;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4059,468,0 chrVI 71473 . T C 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=4.124;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.705;QD=18.00;ReadPosRankSum=1.715;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3582,443,0 chrVI 71500 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.5790;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.55;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3691,423,0 chrVI 71596 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.1606;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.27;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4381,527,0 chrVI 71733 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.18;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3881,444,0 chrVI 72161 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.67;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4104,471,0 chrVI 72397 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0143;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.36;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3737,443,0 chrVI 72412 . T A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.6072;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.03;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3785,441,0 chrVI 72490 . A G 4184.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.82;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4184,512,0 chrVI 72553 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.6236;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.27;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4424,507,0 chrVI 72559 . C A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.35;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4063,471,0 chrVI 73471 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.82;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2999,348,0 chrVI 73840 . G A 6530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=26.3532;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.498;QD=21.06;ReadPosRankSum=-0.702;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,305:310:99:6530,759,0 chrVI 73933 . G A 5937.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=11.2340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.21;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:5937,722,0 chrVI 74035 . G A 7984.01 filter AC=2;AF=1.00;AN=2;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=22.1354;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.74;SB=-4.143e+03 GT:AD:DP:GQ:PL 1/1:0,384:385:99:7984,930,0 chrVI 74065 . G A 7568.01 filter AC=2;AF=1.00;AN=2;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=15.9616;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.36;SB=-3.788e+03 GT:AD:DP:GQ:PL 1/1:0,389:391:99:7568,896,0 chrVI 74173 . C T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.83;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:4520,525,0 chrVI 74254 . C T 4743.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=17.76;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:4743,557,0 chrVI 74647 . A C 760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=12.175;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;MQRankSum=-0.893;QD=23.03;ReadPosRankSum=1.628;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:93:793,93,0 chrVI 74753 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=23.05;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1946,225,0 chrVI 74850 . A T 841 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=14.50;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:874,105,0 chrVI 74858 . A G 832 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;MQRankSum=-1.615;QD=14.10;ReadPosRankSum=1.674;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:865,105,0 chrVI 74862 . A G 834 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=15.16;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:867,102,0 chrVI 74863 . A G 785 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=13.31;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:96:818,96,0 chrVI 74871 . T A 992 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=6.021;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=-0.770;QD=13.78;ReadPosRankSum=1.540;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1025,120,0 chrVI 74902 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=16.14;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1292,153,0 chrVI 74906 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=16.60;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1311,147,0 chrVI 75052 . G A 1149 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=13.36;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1182,135,0 chrVI 75054 . A G 1099 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=6.403;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;MQRankSum=0.563;QD=13.24;ReadPosRankSum=1.690;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1132,135,0 chrVI 75055 . A T 1138 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=13.71;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1171,135,0 chrVI 75101 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=9.79;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1179,144,0 chrVI 75368 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.61;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:3722,429,0 chrVI 75376 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=17.67;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3375,399,0 chrVI 75434 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=17.44;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3575,408,0 chrVI 75453 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-0.617;QD=17.08;ReadPosRankSum=-1.394;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:3519,408,0 chrVI 75475 . T C 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.701;QD=17.88;ReadPosRankSum=1.700;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:3845,456,0 chrVI 76126 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.76;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1851,228,0 chrVI 76268 . G T 1928 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.73;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1961,228,0 chrVI 76608 . C A 2073 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.37;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2106,255,0 chrVI 76747 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=157;Dels=0.00;FS=3.017;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.775;QD=20.59;ReadPosRankSum=2.418;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3268,387,0 chrVI 76851 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.96;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3007,351,0 chrVI 76860 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.99;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3151,360,0 chrVI 76911 . C A 2624 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=15.44;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:2657,303,0 chrVI 76914 . T C 2418 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=14.31;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2451,288,0 chrVI 76956 . G A 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=170;Dels=0.00;FS=3.248;HaplotypeScore=7.1625;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.035;QD=16.49;ReadPosRankSum=1.261;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:2836,327,0 chrVI 76992 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.225;DP=175;Dels=0.00;FS=2.050;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.674;QD=16.42;ReadPosRankSum=1.033;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:4,171:175:99:2907,315,0 chrVI 77007 . T G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.527;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-0.266;QD=16.85;ReadPosRankSum=-0.408;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:3150,342,0 chrVI 77013 . T C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.9235;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.518;QD=16.18;ReadPosRankSum=-0.363;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:3172,344,0 chrVI 77181 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.2445;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.788;QD=22.08;ReadPosRankSum=0.163;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:2,202:208:99:4593,493,0 chrVI 77256 . G A 4864.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=18.8047;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.91;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4864,570,0 chrVI 77340 . G A 5286.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.3062;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.23;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5286,606,0 chrVI 77619 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.0719;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.309;QD=20.78;ReadPosRankSum=1.692;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3595,426,0 chrVI 77922 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.66;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1918,231,0 chrVI 77976 . G A 896 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=19.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:929,105,0 chrVI 77994 . C G 535 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=17.83;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:30:69:568,69,0 chrVI 77996 . C T 521 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=17.37;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:66:554,66,0 chrVI 78036 . T C 451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.091;QD=16.70;ReadPosRankSum=1.605;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:57:484,57,0 chrVI 78069 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.00;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,86:90:99:1833,219,0 chrVI 78202 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.94;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3749,470,0 chrVI 78568 . A G 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.759;QD=20.63;ReadPosRankSum=1.666;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4332,521,0 chrVI 78667 . T G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=3.944;HaplotypeScore=8.1762;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.177;QD=19.43;ReadPosRankSum=1.675;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3536,422,0 chrVI 78750 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.98;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3671,426,0 chrVI 78805 . G T 2944 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.33;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2977,348,0 chrVI 78930 . A G 3644.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.22;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3644,426,0 chrVI 79038 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.86;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2613,306,0 chrVI 79337 . T C 2132 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.92;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2165,264,0 chrVI 79343 . G C 2333 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.61;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2366,282,0 chrVI 79488 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.43;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2444,291,0 chrVI 79623 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.73;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2468,297,0 chrVI 79758 . T C 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=146;Dels=0.00;FS=5.440;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.607;QD=21.12;ReadPosRankSum=2.938;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3116,366,0 chrVI 79809 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=167;Dels=0.00;FS=8.511;HaplotypeScore=11.5204;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.228;QD=21.06;ReadPosRankSum=2.420;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3517,422,0 chrVI 79911 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9358;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.04;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3791,438,0 chrVI 80049 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.42;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3878,447,0 chrVI 80232 . T C 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=5.441;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.928;QD=19.73;ReadPosRankSum=1.701;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2282,270,0 chrVI 80257 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3890;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.07;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2181,255,0 chrVI 81527 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=17.78;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2096,240,0 chrVI 81532 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=120;Dels=0.00;FS=6.434;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.279;QD=17.10;ReadPosRankSum=2.367;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2085,249,0 chrVI 81686 . T C 2695 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.64;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2728,318,0 chrVI 81803 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.99;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4002,456,0 chrVI 81877 . A G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.962;QD=19.90;ReadPosRankSum=1.681;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2740,327,0 chrVI 81880 . C G 2353 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.10;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2386,291,0 chrVI 81945 . T C 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=162;Dels=0.00;FS=6.324;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.908;QD=19.50;ReadPosRankSum=2.419;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3192,372,0 chrVI 81965 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=195;Dels=0.00;FS=3.016;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.665;QD=20.15;ReadPosRankSum=2.348;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3930,462,0 chrVI 82058 . C T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.1808;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.32;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3779,447,0 chrVI 82187 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.1168;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.02;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4602,545,0 chrVI 82265 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3626,440,0 chrVI 82465 . A G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=131;Dels=0.00;FS=5.989;HaplotypeScore=11.6634;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.117;QD=22.17;ReadPosRankSum=2.946;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:3,126:131:99:2937,348,0 chrVI 82648 . C A 2939 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.77;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2972,345,0 chrVI 82675 . T A 2407 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.73;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2440,282,0 chrVI 82679 . T A 2416 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.47;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2449,279,0 chrVI 83125 . T C 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=214;Dels=0.00;FS=3.026;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.135;QD=19.57;ReadPosRankSum=2.426;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:4188,506,0 chrVI 83149 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=3.220;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.354;QD=19.47;ReadPosRankSum=1.696;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3739,452,0 chrVI 83524 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.90;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3992,479,0 chrVI 83611 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=222;Dels=0.00;FS=2.553;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.045;QD=20.07;ReadPosRankSum=2.968;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:4455,539,0 chrVI 83639 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.879;QD=21.87;ReadPosRankSum=2.375;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4352,513,0 chrVI 83680 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.61;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2876,330,0 chrVI 83687 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.16;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2755,312,0 chrVI 83720 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.50;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2061,237,0 chrVI 83900 . T C 1811 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=21.82;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1844,222,0 chrVI 83951 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.22;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1688,192,0 chrVI 84036 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=18.80;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1537,174,0 chrVI 84063 . A T 1372 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=15.77;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1405,162,0 chrVI 84086 . C T 1316 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=14.15;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1349,159,0 chrVI 84102 . C G 1022 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;QD=12.31;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1055,126,0 chrVI 84119 . T G 843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=57.9399;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;MQRankSum=-1.545;QD=11.39;ReadPosRankSum=1.685;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:876,105,0 chrVI 84132 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=10.65;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:906,102,0 chrVI 84187 . G A 2164 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.3968;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.18;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2197,255,0 chrVI 84235 . A G 2912 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.11;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2945,345,0 chrVI 84295 . A T 2354 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=23.31;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2387,273,0 chrVI 84436 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.69;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2743,309,0 chrVI 84451 . A G 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=6.849;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.707;QD=19.39;ReadPosRankSum=2.365;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2302,273,0 chrVI 84474 . A G 2216 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.15;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2249,261,0 chrVI 84512 . T C 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.228;QD=17.81;ReadPosRankSum=1.698;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1885,222,0 chrVI 85328 . C G 2363 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2396,290,0 chrVI 85636 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.30;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3768,432,0 chrVI 85688 . G C 3574.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.06;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3574,420,0 chrVI 85922 . A T 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.778;QD=20.01;ReadPosRankSum=1.657;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2794,324,0 chrVI 85941 . C T 2561 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.83;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2594,306,0 chrVI 86452 . G A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.65;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3746,426,0 chrVI 86478 . G C 3314.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.11;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3314,387,0 chrVI 86574 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.2311;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.47;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3275,390,0 chrVI 86721 . G T 4025.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.13;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4025,462,0 chrVI 87400 . C T 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.163;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.583;QD=22.19;ReadPosRankSum=1.583;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2607,303,0 chrVI 87404 . T C 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=1.463;QD=21.77;ReadPosRankSum=1.254;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2558,306,0 chrVI 87438 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.495;QD=19.46;ReadPosRankSum=1.622;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2485,297,0 chrVI 87512 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.346;QD=21.47;ReadPosRankSum=1.663;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2180,255,0 chrVI 87634 . G A 746 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=14.63;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:779,90,0 chrVI 87647 . T C 568 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.21;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:601,75,0 chrVI 87650 . T C 543 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=12.63;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:72:576,72,0 chrVI 87662 . G A 375 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=0;QD=9.62;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:48:408,48,0 chrVI 87666 . T A 382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;MQRankSum=-1.733;QD=10.61;ReadPosRankSum=1.636;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:48:415,48,0 chrVI 87680 . C A 419 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=11.64;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:452,54,0 chrVI 87949 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.35;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2510,294,0 chrVI 87991 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;DP=212;Dels=0.00;FS=7.480;HaplotypeScore=26.7489;MLEAC=1;MLEAF=0.500;MQ=44.20;MQ0=0;MQRankSum=2.727;QD=0.10;ReadPosRankSum=-3.364;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:199,11:212:52:52,0,594 chrVI 88000 . C T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.536;DP=214;Dels=0.00;FS=2.595;HaplotypeScore=30.7385;MLEAC=1;MLEAF=0.500;MQ=43.65;MQ0=0;MQRankSum=3.870;QD=0.08;ReadPosRankSum=-7.274;SB=-4.140e+02 GT:AD:DP:GQ:PL 0/1:128,86:214:47:47,0,844 chrVI 88329 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.30;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3322,393,0 chrVI 88777 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3017,348,0 chrVI 89605 . T A 1800 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1833,210,0 chrVI 89727 . A G 1975 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.24;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2008,237,0 chrVI 89832 . A G 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=105;Dels=0.00;FS=3.181;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.733;QD=20.02;ReadPosRankSum=1.699;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2135,249,0 chrVI 89980 . C A 2065 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.77;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2098,255,0 chrVI 90217 . A G 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=4.361;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.303;QD=21.37;ReadPosRankSum=1.715;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,202:207:99:4423,542,0 chrVI 90244 . T C 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=231;Dels=0.00;FS=2.930;HaplotypeScore=5.8425;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.260;QD=20.40;ReadPosRankSum=2.365;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4713,563,0 chrVI 90659 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.8735;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.59;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3269,387,0 chrVI 90767 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.38;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2128,243,0 chrVI 90772 . T G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.247;QD=17.52;ReadPosRankSum=1.701;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2013,243,0 chrVI 90851 . C A 2757 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.60;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2790,324,0 chrVI 90883 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2646,312,0 chrVI 91021 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.87;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2548,303,0 chrVI 91098 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.13;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2600,303,0 chrVI 91421 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.42;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3032,348,0 chrVI 92092 . G T 2820 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.20;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2853,330,0 chrVI 92105 . A G 2402 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.02;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2435,285,0 chrVI 92119 . A G 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.644;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.626;QD=15.88;ReadPosRankSum=2.418;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:1875,207,0 chrVI 92224 . A C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=127;Dels=0.00;FS=2.595;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.859;QD=20.97;ReadPosRankSum=2.410;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2696,321,0 chrVI 92432 . G A 526.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.907;DP=98;Dels=0.00;FS=10.010;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=35.62;MQ0=0;MQRankSum=-0.213;QD=5.37;ReadPosRankSum=0.061;SB=-3.860e+02 GT:AD:DP:GQ:PL 0/1:40,58:98:99:556,0,332 chrVI 92439 . A G 110.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;DP=111;Dels=0.00;FS=12.182;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=37.39;MQ0=0;MQRankSum=-1.442;QD=0.99;ReadPosRankSum=-3.023;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:78,33:111:99:140,0,765 chrVI 92469 . A G 2002 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=13.90;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2035,246,0 chrVI 92487 . C A 2330 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=0;QD=14.21;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2363,279,0 chrVI 92502 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=14.79;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2326,273,0 chrVI 92503 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=14.68;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2308,276,0 chrVI 92534 . A G 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=123;Dels=0.00;FS=6.022;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;MQRankSum=-2.402;QD=13.93;ReadPosRankSum=2.943;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:1746,210,0 chrVI 92570 . A G 993 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=15.52;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1026,123,0 chrVI 92573 . A G 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;MQRankSum=0.293;QD=14.32;ReadPosRankSum=1.679;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:964,120,0 chrVI 92605 . T C 1282 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=16.44;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1315,162,0 chrVI 92623 . T G 1279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;MQRankSum=1.244;QD=15.99;ReadPosRankSum=1.643;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1312,159,0 chrVI 92735 . T A 324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.010;DP=91;Dels=0.00;FS=8.377;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=1.189;QD=3.56;ReadPosRankSum=-6.512;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:60,26:91:45:357,45,0 chrVI 92770 . G A 1195 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=14.40;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1228,147,0 chrVI 92776 . C T 1163 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=14.54;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1196,141,0 chrVI 92875 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.42;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2867,330,0 chrVI 92995 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.36;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2781,333,0 chrVI 93041 . C T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.8224;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.39;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3914,453,0 chrVI 93077 . A C 3954.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.0053;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.38;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3954,473,0 chrVI 93192 . G A 4811.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=23.82;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4811,549,0 chrVI 93235 . A G 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-1.254;QD=17.48;ReadPosRankSum=1.712;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3074,369,0 chrVI 93244 . C G 2850 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=16.57;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2883,350,0 chrVI 93250 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=16.78;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3070,357,0 chrVI 93271 . C A 2731 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=15.43;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2764,321,0 chrVI 93381 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=5.735;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.168;QD=19.09;ReadPosRankSum=1.715;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:3951,479,0 chrVI 93404 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=166;Dels=0.00;FS=2.585;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.389;QD=17.57;ReadPosRankSum=2.945;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:3,160:166:99:2950,342,0 chrVI 93664 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=6.737;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.338;QD=22.35;ReadPosRankSum=2.406;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3821,447,0 chrVI 93934 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.97;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3614,414,0 chrVI 94545 . C T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7299;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.83;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4520,525,0 chrVI 94981 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=15.43;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1252,150,0 chrVI 95054 . T A 548 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=12.74;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:581,66,0 chrVI 95140 . A C 870 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.71;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:903,105,0 chrVI 95232 . A G 948 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.55;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:981,117,0 chrVI 95308 . C A 1192 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.06;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1225,141,0 chrVI 95321 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.48;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1377,159,0 chrVI 95326 . C A 1369 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.25;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1402,162,0 chrVI 95387 . G C 1456 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.13;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,80:85:99:1489,174,0 chrVI 95585 . T A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9402;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.98;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4110,491,0 chrVI 95627 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=200;Dels=0.00;FS=5.828;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-0.949;QD=16.04;ReadPosRankSum=1.715;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:3241,389,0 chrVI 95632 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.38;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3598,411,0 chrVI 95849 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0889;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.42;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3315,393,0 chrVI 96304 . G T 801 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=10.68;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:834,99,0 chrVI 96305 . A C 688 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=9.05;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:90:721,90,0 chrVI 96317 . C A 875 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=10.29;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:908,105,0 chrVI 96318 . C A 846 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=9.84;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:879,102,0 chrVI 96502 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.27;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1328,162,0 chrVI 96612 . G A 574 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=13.35;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:69:607,69,0 chrVI 96667 . C T 942 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=9.92;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:975,111,0 chrVI 96693 . A G 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.774;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;MQRankSum=2.799;QD=0.51;ReadPosRankSum=-3.250;SB=-3.397e+01 GT:AD:DP:GQ:PL 1/1:82,4:86:9:76,9,0 chrVI 96694 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.941;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;MQRankSum=2.560;QD=0.23;ReadPosRankSum=-2.798;SB=-3.476e+01 GT:AD:DP:GQ:PL 1/1:82,3:85:6:51,6,0 chrVI 96695 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.186;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=1.658;QD=0.19;ReadPosRankSum=-2.362;SB=-3.476e+01 GT:AD:DP:GQ:PL 1/1:82,2:84:6:47,6,0 chrVI 96802 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.61;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1829,213,0 chrVI 96814 . G A 1917 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4409;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=15.71;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1950,237,0 chrVI 96853 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=183;Dels=0.00;FS=2.600;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=-1.966;QD=18.75;ReadPosRankSum=2.356;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3432,413,0 chrVI 96991 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.30;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3553,414,0 chrVI 97235 . T C 4626.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=21.5028;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.20;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4626,557,0 chrVI 97308 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.37;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3282,381,0 chrVI 97363 . C T 3144 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=17.27;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3177,360,0 chrVI 97366 . C T 2870 SnpCluster AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=15.68;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,181:183:99:2903,348,0 chrVI 97372 . T C 3018 SnpCluster AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.49;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3051,377,0 chrVI 97636 . A G 635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.955;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.7728;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.450;QD=12.21;ReadPosRankSum=1.520;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:1,48:52:81:668,81,0 chrVI 97737 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=23.77;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1768,207,0 chrVI 97814 . T G 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-0.324;QD=17.66;ReadPosRankSum=2.372;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1711,213,0 chrVI 97819 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.57;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1816,222,0 chrVI 97944 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=16.85;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2442,285,0 chrVI 97954 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.13;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2329,264,0 chrVI 97961 . A T 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=4.039;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-1.284;QD=16.17;ReadPosRankSum=1.709;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2410,279,0 chrVI 97979 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=15.50;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2265,261,0 chrVI 98011 . C A 2335 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=17.30;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2368,273,0 chrVI 98071 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.65;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3356,393,0 chrVI 98152 . A T 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9577;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-1.336;QD=22.06;ReadPosRankSum=1.692;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3860,441,0 chrVI 98186 . A G 2890 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=19.53;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2923,350,0 chrVI 98330 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0873;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.64;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3350,381,0 chrVI 98368 . A G 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=0.390;QD=17.98;ReadPosRankSum=1.701;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2047,243,0 chrVI 98380 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=19.18;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2009,231,0 chrVI 98408 . A G 1714 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=16.80;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1747,207,0 chrVI 98423 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.715;QD=17.32;ReadPosRankSum=1.669;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1921,228,0 chrVI 98578 . A T 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.762;QD=21.54;ReadPosRankSum=1.697;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2187,252,0 chrVI 98593 . G T 2037 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5317;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.44;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2070,240,0 chrVI 98654 . C G 1802 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.59;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1835,222,0 chrVI 98757 . G C 1801 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=60.8278;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.16;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1834,222,0 chrVI 99131 . T C 347 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=13.88;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,24:25:48:380,48,0 chrVI 99605 . T C 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=129;Dels=0.00;FS=4.351;HaplotypeScore=18.0225;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.947;QD=19.06;ReadPosRankSum=1.678;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2492,291,0 chrVI 99734 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.1203;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.90;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3302,393,0 chrVI 99792 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.17;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4522,522,0 chrVI 99800 . C G 4232.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.85;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4232,498,0 chrVI 99817 . G A 4107.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.06;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4107,468,0 chrVI 99895 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.1182;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.68;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3837,444,0 chrVI 100276 . G T 2674 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.26;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2707,318,0 chrVI 100356 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=137;Dels=0.00;FS=6.925;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;MQRankSum=-1.552;QD=14.74;ReadPosRankSum=2.396;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2052,243,0 chrVI 100368 . G C 1499 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.4067;MLEAC=2;MLEAF=1.00;MQ=37.38;MQ0=0;QD=12.09;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:1532,189,0 chrVI 100382 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=94.7178;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=12.39;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1421,162,0 chrVI 100428 . T C 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;MQRankSum=-0.885;QD=10.94;ReadPosRankSum=1.548;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1061,129,0 chrVI 100437 . A C 1042 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=11.58;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1075,132,0 chrVI 100449 . C T 1255 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=13.49;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1288,153,0 chrVI 100526 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.01;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2828,336,0 chrVI 100659 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=21.45;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1878,219,0 chrVI 100696 . A T 1902 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=21.86;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1935,225,0 chrVI 100766 . A G 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.866;QD=20.75;ReadPosRankSum=1.670;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1195,144,0 chrVI 100827 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=20.79;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1696,201,0 chrVI 100865 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=16.26;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1952,231,0 chrVI 100869 . A G 1947 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=16.22;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1980,234,0 chrVI 100886 . A C 1574 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=13.45;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1607,192,0 chrVI 100887 . G C 1546 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=13.33;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1579,186,0 chrVI 100899 . T G 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=-1.703;QD=11.38;ReadPosRankSum=1.703;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1399,168,0 chrVI 100905 . A G 1275 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=10.37;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1308,156,0 chrVI 100932 . G A 1343 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=11.19;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1376,165,0 chrVI 100946 . A C 1024 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=9.23;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1057,129,0 chrVI 100956 . G T 1222 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=10.53;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1255,144,0 chrVI 100987 . A G 2094 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=16.23;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2127,255,0 chrVI 101006 . C G 2401 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.79;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2434,299,0 chrVI 101047 . G T 3189 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.06;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3222,375,0 chrVI 101203 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=19.48;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2371,276,0 chrVI 101214 . A G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=1.045;QD=19.18;ReadPosRankSum=1.653;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2545,303,0 chrVI 101264 . A T 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=1.283;QD=16.61;ReadPosRankSum=1.707;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2342,270,0 chrVI 101279 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.09;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2330,273,0 chrVI 101512 . C T 1183 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.72;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1216,141,0 chrVI 101826 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3026,351,0 chrVI 101859 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4670;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.84;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3981,450,0 chrVI 101913 . A G 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=169;Dels=0.00;FS=9.187;HaplotypeScore=11.2830;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.577;QD=18.32;ReadPosRankSum=2.887;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3129,380,0 chrVI 102071 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.75;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4393,504,0 chrVI 102489 . T G 4208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=3.620;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.753;QD=21.47;ReadPosRankSum=1.696;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,190:196:99:4208,500,0 chrVI 102880 . A T 5178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=248;Dels=0.00;FS=3.610;HaplotypeScore=11.4536;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.592;QD=20.88;ReadPosRankSum=1.718;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5178,606,0 chrVI 102918 . A G 5296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=251;Dels=0.00;FS=4.104;HaplotypeScore=20.2587;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.582;QD=21.10;ReadPosRankSum=1.690;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,246:250:99:5296,632,0 chrVI 103002 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4484;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3904,462,0 chrVI 103249 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.98;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1103,135,0 chrVI 103374 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=11.50;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1378,171,0 chrVI 103388 . T A 938 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=8.61;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:971,114,0 chrVI 103389 . T G 854 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;MQRankSum=-2.195;QD=7.83;ReadPosRankSum=2.862;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:887,105,0 chrVI 103397 . T C 714 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=7.07;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:93:747,93,0 chrVI 103398 . A G 694 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=6.87;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:90:727,90,0 chrVI 103476 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.48;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3563,405,0 chrVI 103509 . C T 4583.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.55;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4583,534,0 chrVI 103545 . A G 3690.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=206;Dels=0.00;FS=2.990;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;MQRankSum=-1.055;QD=17.91;ReadPosRankSum=2.390;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:3690,449,0 chrVI 103548 . G A 3779.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=18.90;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3779,435,0 chrVI 103553 . G A 3673.01 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3823;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=18.84;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3673,429,0 chrVI 103865 . A C 1154 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=14.42;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1187,147,0 chrVI 104114 . C G 2200 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2233,273,0 chrVI 105370 . A G 6409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.200;DP=320;Dels=0.00;FS=14.665;HaplotypeScore=30.1872;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.035;QD=20.03;ReadPosRankSum=3.434;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:4,315:320:99:6409,787,0 chrVI 105427 . A G 6320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=335;Dels=0.00;FS=2.862;HaplotypeScore=21.1586;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.670;QD=18.87;ReadPosRankSum=2.362;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:2,333:335:99:6320,764,0 chrVI 105934 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.540;QD=19.48;ReadPosRankSum=1.647;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3228,386,0 chrVI 105961 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0405;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.05;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2948,351,0 chrVI 106096 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.36;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3087,354,0 chrVI 106194 . A G 2762 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.77;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2795,327,0 chrVI 106222 . T C 2075 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.1002;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.86;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2108,249,0 chrVI 106492 . T C 2034 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.02;FS=0.000;HaplotypeScore=7.9996;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.16;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2067,249,0 chrVI 106494 . C G 1923 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4223;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.81;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1956,237,0 chrVI 106532 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.177;HaplotypeScore=10.8868;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.247;QD=17.57;ReadPosRankSum=1.706;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2388,282,0 chrVI 106692 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6605;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.698;QD=19.24;ReadPosRankSum=1.704;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2419,299,0 chrVI 106813 . A G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.232;QD=19.55;ReadPosRankSum=1.678;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2535,311,0 chrVI 106837 . C T 3081 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.4970;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.50;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3114,354,0 chrVI 106918 . A C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.865;DP=136;Dels=0.00;FS=6.940;HaplotypeScore=15.3641;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.974;QD=19.88;ReadPosRankSum=2.377;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2737,321,0 chrVI 106954 . A G 2308 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.61;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2341,279,0 chrVI 106991 . A C 2304 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.39;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2337,284,0 chrVI 107042 . G T 2547 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.71;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2580,297,0 chrVI 107101 . T A 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=118;Dels=0.00;FS=4.808;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.585;QD=20.48;ReadPosRankSum=1.703;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2450,282,0 chrVI 107432 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.02;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3457,419,0 chrVI 107821 . G A 347 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.285;DP=78;Dels=0.00;FS=5.249;HaplotypeScore=66.5020;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-0.036;QD=4.45;ReadPosRankSum=-7.136;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:32,46:78:45:380,45,0 chrVI 107825 . G A 113.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DP=75;Dels=0.00;FS=5.189;HaplotypeScore=64.1360;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=0;MQRankSum=1.122;QD=1.51;ReadPosRankSum=-4.711;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:61,14:75:84:143,0,84 chrVI 107827 . G A 64.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;DP=76;Dels=0.00;FS=4.944;HaplotypeScore=64.1360;MLEAC=1;MLEAF=0.500;MQ=35.22;MQ0=0;MQRankSum=-0.945;QD=0.84;ReadPosRankSum=4.924;SB=-3.180e+02 GT:AD:DP:GQ:PL 0/1:14,62:76:94:94,0,136 chrVI 107829 . G A 66.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;DP=75;Dels=0.00;FS=5.467;HaplotypeScore=64.1360;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=0;MQRankSum=-0.556;QD=0.88;ReadPosRankSum=-4.487;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:63,12:75:96:96,0,119 chrVI 107833 . G A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DP=75;Dels=0.00;FS=3.598;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=35.81;MQ0=0;MQRankSum=-1.158;QD=0.15;ReadPosRankSum=-4.416;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,9:75:41:41,0,189 chrVI 107844 . G A 340 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=4.66;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:42:373,42,0 chrVI 107906 . G A 1399 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.57;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1432,168,0 chrVI 108002 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.50;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3250,389,0 chrVI 108071 . A G 2750 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.37;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2783,338,0 chrVI 108113 . A G 2543 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4195;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.27;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2576,303,0 chrVI 108272 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.5512;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.43;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,179:184:99:3392,410,0 chrVI 108416 . C T 4576.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.90;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4576,528,0 chrVI 108452 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=233;Dels=0.00;FS=3.724;HaplotypeScore=7.4680;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.817;QD=17.45;ReadPosRankSum=1.702;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:1,230:233:99:4066,500,0 chrVI 108471 . C A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=18.91;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4783,537,0 chrVI 108617 . C T 4607.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.33;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4607,516,0 chrVI 108665 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.3063;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.700;QD=20.01;ReadPosRankSum=1.716;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4363,513,0 chrVI 108710 . C T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.97;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4214,500,0 chrVI 108794 . T C 3133 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.70;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3166,383,0 chrVI 108834 . G C 2362 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.2289;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.05;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2395,282,0 chrVI 108920 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3615,408,0 chrVI 109247 . T C 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.880;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.284;QD=22.26;ReadPosRankSum=2.395;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3016,365,0 chrVI 109334 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.05;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2900,336,0 chrVI 109402 . A C 3086 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.41;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3119,372,0 chrVI 109415 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.49;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3504,405,0 chrVI 110137 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=13.39;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1399,168,0 chrVI 110157 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=14.46;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1421,168,0 chrVI 110229 . T C 1660 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.86;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1693,201,0 chrVI 110330 . G T 1569 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=16.69;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1602,186,0 chrVI 110435 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.22;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1914,219,0 chrVI 110527 . C G 2411 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.32;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2444,285,0 chrVI 110578 . G T 2900 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.01;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2933,342,0 chrVI 110685 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.92;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3756,429,0 chrVI 110715 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.8573;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.26;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3384,387,0 chrVI 110820 . T A 3557.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.6026;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-1.060;QD=19.33;ReadPosRankSum=2.874;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3557,411,0 chrVI 110821 . C T 3608.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.6026;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=1.167;QD=19.40;ReadPosRankSum=0.207;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3608,414,0 chrVI 110822 . C T 3592.01 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.52;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3592,420,0 chrVI 110943 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.06;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2729,309,0 chrVI 110959 . A T 2728 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.48;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2761,315,0 chrVI 111186 . G A 428 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.46;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:461,54,0 chrVI 111190 . A G 443 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=16.41;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:57:476,57,0 chrVI 111466 . A T 829 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;QD=15.94;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:862,102,0 chrVI 111480 . T C 691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.554;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.7724;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=0.511;QD=14.10;ReadPosRankSum=0.383;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:3,45:49:87:724,87,0 chrVI 111544 . A T 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=6.842;HaplotypeScore=4.1213;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-1.573;QD=21.37;ReadPosRankSum=1.692;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1892,219,0 chrVI 111629 . A G 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=109;Dels=0.00;FS=11.533;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.034;QD=19.97;ReadPosRankSum=2.381;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2210,261,0 chrVI 111667 . C G 1838 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5472;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=16.41;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:1871,225,0 chrVI 111668 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.9699;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=17.94;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2006,231,0 chrVI 111687 . A G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=5.093;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;MQRankSum=-0.137;QD=16.88;ReadPosRankSum=1.677;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2160,255,0 chrVI 111699 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=15.75;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2002,240,0 chrVI 111758 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=18.07;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2237,252,0 chrVI 111847 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.79;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3214,369,0 chrVI 111948 . T C 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;MQRankSum=-0.247;QD=19.39;ReadPosRankSum=1.701;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2224,258,0 chrVI 111956 . A G 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.998;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=1.145;QD=17.33;ReadPosRankSum=1.644;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2095,255,0 chrVI 111983 . C G 2363 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.50;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2396,288,0 chrVI 112069 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.97;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2406,264,0 chrVI 112154 . T C 1336 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=19.09;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1369,162,0 chrVI 112159 . A T 1475 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=19.41;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1508,171,0 chrVI 112349 . T C 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.238;QD=17.65;ReadPosRankSum=2.238;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1463,158,0 chrVI 112383 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.08;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2121,246,0 chrVI 112418 . T C 1383 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.07;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1416,171,0 chrVI 112425 . A G 1169 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=14.99;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1202,147,0 chrVI 112435 . A G 1052 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=13.84;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1085,129,0 chrVI 112767 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3656,423,0 chrVI 112984 . T C 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.674;QD=18.18;ReadPosRankSum=1.674;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2269,264,0 chrVI 113044 . G T 2161 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.98;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2194,249,0 chrVI 113076 . C A 2422 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.85;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2455,282,0 chrVI 113124 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.22;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2700,321,0 chrVI 113247 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=2.962;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.363;QD=20.75;ReadPosRankSum=2.412;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2772,333,0 chrVI 113355 . T A 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.4576;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=1.364;QD=21.61;ReadPosRankSum=1.677;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4084,474,0 chrVI 113356 . G A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.4576;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=22.04;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4144,471,0 chrVI 113586 . C A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.2554;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=18.26;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3246,387,0 chrVI 113592 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=178;Dels=0.00;FS=3.541;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=-0.956;QD=16.67;ReadPosRankSum=1.712;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,173:178:99:3000,362,0 chrVI 113619 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.33;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3336,396,0 chrVI 113688 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.36;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3624,431,0 chrVI 113778 . T C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=3.823;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.690;QD=19.70;ReadPosRankSum=1.676;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2456,302,0 chrVI 113799 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.62;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3017,342,0 chrVI 113910 . A G 2163 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.21;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2196,255,0 chrVI 114171 . A T 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=97;Dels=0.01;FS=15.464;HaplotypeScore=12.7607;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;MQRankSum=-2.253;QD=11.79;ReadPosRankSum=2.927;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1177,138,0 chrVI 114192 . T C 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;MQRankSum=-0.269;QD=10.20;ReadPosRankSum=2.347;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1012,120,0 chrVI 114202 . T C 915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=67.4217;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;MQRankSum=-1.625;QD=9.43;ReadPosRankSum=1.696;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:948,114,0 chrVI 114248 . T C 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;MQRankSum=0.601;QD=11.04;ReadPosRankSum=1.661;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1115,135,0 chrVI 114251 . T C 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;MQRankSum=-1.840;QD=11.57;ReadPosRankSum=2.279;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1202,144,0 chrVI 114263 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=13.05;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1442,162,0 chrVI 114275 . C G 1598 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=12.99;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1631,192,0 chrVI 114340 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=1.693;QD=18.71;ReadPosRankSum=1.713;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3387,383,0 chrVI 114352 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=19.65;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3537,414,0 chrVI 114379 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=184;Dels=0.00;FS=5.471;HaplotypeScore=19.8907;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;MQRankSum=-2.390;QD=18.53;ReadPosRankSum=2.918;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3409,407,0 chrVI 114429 . A G 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=181;Dels=0.00;FS=7.136;HaplotypeScore=13.6311;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=0.844;QD=21.82;ReadPosRankSum=2.422;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3949,465,0 chrVI 114541 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.56;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4205,512,0 chrVI 114707 . C T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.13;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4183,497,0 chrVI 114918 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.37;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2559,303,0 chrVI 115088 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6481;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.074;QD=20.80;ReadPosRankSum=2.893;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:3,175:180:99:3744,444,0 chrVI 115119 . T C 2930 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=18.31;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2963,356,0 chrVI 115181 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.04;FS=0.000;HaplotypeScore=101.0303;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=9.10;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,192:196:99:1890,222,0 chrVI 115291 . C T 8960.01 filter AC=2;AF=1.00;AN=2;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=19.6256;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.46;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,399:399:99:8960,1043,0 chrVI 115411 . A C 7465.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.054;DP=409;Dels=0.00;FS=7.336;HaplotypeScore=27.0595;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=1.920;QD=18.25;ReadPosRankSum=4.187;SB=-3.413e+03 GT:AD:DP:GQ:PL 1/1:6,402:409:99:7465,904,0 chrVI 115494 . C G 7189.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=13.7903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,361:363:99:7189,872,0 chrVI 115717 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.098;QD=19.75;ReadPosRankSum=1.708;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2838,333,0 chrVI 115810 . G T 2981 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.92;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3014,348,0 chrVI 116037 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.815;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.986;QD=19.71;ReadPosRankSum=1.075;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3863,456,0 chrVI 116045 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=208;Dels=0.00;FS=5.324;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.647;QD=18.71;ReadPosRankSum=2.937;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:3891,464,0 chrVI 116186 . C T 4892.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.14;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4892,567,0 chrVI 116269 . A G 4889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.4571;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.253;QD=19.32;ReadPosRankSum=1.664;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:4889,602,0 chrVI 116448 . G A 6022.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=10.0968;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.82;SB=-3.288e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6022,722,0 chrVI 116660 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=211;Dels=0.00;FS=5.663;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.435;QD=18.93;ReadPosRankSum=1.650;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:3995,479,0 chrVI 116839 . G C 1914 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.95;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1947,231,0 chrVI 117415 . G A 149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;DP=182;Dels=0.00;FS=8.521;HaplotypeScore=16.5945;MLEAC=1;MLEAF=0.500;MQ=46.34;MQ0=6;MQRankSum=-7.948;QD=0.82;ReadPosRankSum=-3.199;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,31:182:99:179,0,2770 chrVI 117460 . G T 603.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.978;DP=233;Dels=0.00;FS=33.179;HaplotypeScore=11.4741;MLEAC=1;MLEAF=0.500;MQ=47.91;MQ0=9;MQRankSum=-8.602;QD=2.59;ReadPosRankSum=3.637;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:169,61:233:99:633,0,3293 chrVI 117833 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=21.41;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3265,381,0 chrVI 118034 . T A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.77;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3415,390,0 chrVI 118229 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.45;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2507,291,0 chrVI 118346 . A G 1616 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.79;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1649,192,0 chrVI 118499 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.97;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1850,225,0 chrVI 118563 . C A 1666 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.64;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1699,192,0 chrVI 118597 . C G 1694 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.29;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1727,207,0 chrVI 118682 . T C 1480 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.85;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1513,183,0 chrVI 118701 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.06;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1423,171,0 chrVI 118737 . C T 1077 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.89;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1110,129,0 chrVI 118792 . C A 1662 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.87;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1695,195,0 chrVI 118824 . A G 1759 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.94;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1792,213,0 chrVI 119224 . G C 2651 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.24;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2684,312,0 chrVI 119229 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.84;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2652,300,0 chrVI 119266 . C A 1917 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=13.60;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1950,234,0 chrVI 119276 . A G 1690 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=69.3379;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=12.61;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1723,213,0 chrVI 119328 . T C 2507 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=15.97;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2540,306,0 chrVI 119414 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.1462;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.52;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4076,465,0 chrVI 119659 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.53;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3315,381,0 chrVI 119818 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.08;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2064,237,0 chrVI 119911 . T C 2546 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.70;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2579,300,0 chrVI 120163 . A G 2488 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.47;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2521,297,0 chrVI 120204 . T C 2234 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2267,273,0 chrVI 120376 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2740,318,0 chrVI 120550 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2647,300,0 chrVI 121195 . A G 4826.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.5325;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.34;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:4826,581,0 chrVI 121229 . G A 4778.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.59;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4778,569,0 chrVI 121761 . T A 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.709;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.635;QD=20.86;ReadPosRankSum=1.698;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2140,246,0 chrVI 122971 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=121;Dels=0.00;FS=2.969;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.384;QD=19.57;ReadPosRankSum=2.368;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2401,291,0 chrVI 123435 . C G 4386.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.3778;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.29;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4386,530,0 chrVI 123676 . G A 5516.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=17.4408;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.89;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5516,636,0 chrVI 124136 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.8429;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3270,375,0 chrVI 124251 . C G 3753.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.61;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3753,444,0 chrVI 124945 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3925,450,0 chrVI 125753 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2353,267,0 chrVI 125849 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.75;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1610,186,0 chrVI 125959 . T C 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=2.976;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.788;QD=23.21;ReadPosRankSum=2.364;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2029,237,0 chrVI 126183 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9164;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.63;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3252,398,0 chrVI 126853 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.3875;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.90;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3230,372,0 chrVI 126898 . G T 3051 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.79;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3084,363,0 chrVI 127162 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9826;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.11;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3009,354,0 chrVI 127459 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.398;QD=18.31;ReadPosRankSum=1.704;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2303,270,0 chrVI 127462 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.65;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2470,282,0 chrVI 127630 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.16;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3544,414,0 chrVI 127700 . T C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.705;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.100;QD=21.57;ReadPosRankSum=1.672;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2535,300,0 chrVI 128175 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=175;Dels=0.00;FS=3.035;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.080;QD=22.18;ReadPosRankSum=2.421;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3881,461,0 chrVI 128234 . G C 4005.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.65;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4005,474,0 chrVI 129074 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2697,309,0 chrVI 129176 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.96;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3909,444,0 chrVI 129391 . C G 4738.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.8056;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.46;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4738,563,0 chrVI 130480 . T C 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=205;Dels=0.00;FS=5.171;HaplotypeScore=16.8455;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.643;QD=21.90;ReadPosRankSum=3.366;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:4,201:205:99:4490,530,0 chrVI 131200 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1175,135,0 chrVI 131237 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=5.6016;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.61;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1249,147,0 chrVI 131317 . T A 1543 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.85;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1576,189,0 chrVI 131345 . A G 1558 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.77;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1591,186,0 chrVI 131646 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.93;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2903,345,0 chrVI 132667 . G A 2428 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.2825;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.42;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2461,285,0 chrVI 133039 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.56;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2625,303,0 chrVI 133166 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.57;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3204,392,0 chrVI 133255 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=147;Dels=0.00;FS=3.680;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.284;QD=20.82;ReadPosRankSum=1.709;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3094,369,0 chrVI 133441 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=3.274;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.141;QD=23.60;ReadPosRankSum=1.691;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4060,485,0 chrVI 134123 . T G 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=3.645;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.346;QD=19.95;ReadPosRankSum=1.704;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2547,303,0 chrVI 134370 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2383,276,0 chrVI 135481 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1597,183,0 chrVI 135529 . T C 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=61;Dels=0.00;FS=5.404;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.497;QD=20.03;ReadPosRankSum=1.674;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,58:61:99:1255,153,0 chrVI 135874 . G A 2455 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2488,285,0 chrVI 135985 . A G 2543 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7825;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.02;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2576,314,0 chrVI 136273 . G T 2543 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2576,306,0 chrVI 136531 . A T 2618 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.11;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2651,306,0 chrVI 136978 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3340,404,0 chrVI 137241 . C G 2304 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2337,279,0 chrVI 137600 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.82;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1727,210,0 chrVI 137634 . C A 1260 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=18.00;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1293,150,0 chrVI 137636 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=17.04;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1192,147,0 chrVI 137699 . T C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.437;DP=100;Dels=0.00;FS=67.001;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;MQRankSum=2.556;QD=17.72;ReadPosRankSum=3.193;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:6,92:100:99:1805,210,0 chrVI 137770 . A G 221 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;QD=20.09;SB=-7.695e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:30:254,30,0 chrVI 137780 . A G 294 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;QD=17.29;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,16:17:39:327,39,0 chrVI 137836 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.09;MQ0=0;QD=24.46;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1476,171,0 chrVI 137870 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=24.04;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1235,144,0 chrVI 137878 . A T 989 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=21.98;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1022,120,0 chrVI 137956 . G A 16.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;DP=23;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.22;MQ0=17;MQRankSum=1.537;QD=0.71;ReadPosRankSum=-1.537;SB=-1.357e+00 GT:AD:DP:GQ:PL 0/1:20,3:23:13:46,0,13 chrVI 143943 . G C 1484 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=20.33;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1517,186,0 chrVI 144020 . T C 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.745;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;MQRankSum=0.693;QD=21.34;ReadPosRankSum=1.694;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1954,234,0 chrVI 144049 . A G 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;MQRankSum=-0.748;QD=21.47;ReadPosRankSum=1.689;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1772,210,0 chrVI 144149 . T A 1672 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=17.06;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1705,195,0 chrVI 144157 . G T 1629 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=15.51;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1662,195,0 chrVI 144183 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=16.88;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1907,216,0 chrVI 144223 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=13.58;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1500,177,0 chrVI 144261 . A G 1214 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;QD=13.34;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1247,153,0 chrVI 144266 . T G 1005 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;QD=11.55;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1038,123,0 chrVI 144274 . T C 1089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=3.056;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;MQRankSum=-2.138;QD=12.52;ReadPosRankSum=2.393;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1122,135,0 chrVI 144287 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;QD=13.54;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1252,144,0 chrVI 144297 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=14.47;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1335,153,0 chrVI 144324 . G C 1296 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=14.40;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1329,165,0 chrVI 144328 . T A 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.802;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.902;QD=15.33;ReadPosRankSum=1.696;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1505,180,0 chrVI 144372 . A T 2234 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=20.13;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2267,270,0 chrVI 144430 . C A 2048 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=20.90;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2081,237,0 chrVI 144496 . C T 1183 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=17.92;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1216,147,0 chrVI 144525 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=21.75;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1360,156,0 chrVI 144604 . T C 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.774;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.894;QD=21.75;ReadPosRankSum=1.676;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1403,168,0 chrVI 144655 . T C 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.386;QD=22.57;ReadPosRankSum=1.694;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2064,240,0 chrVI 144681 . T A 2603 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.63;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2636,306,0 chrVI 144737 . A G 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=7.309;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.322;QD=21.42;ReadPosRankSum=1.701;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2454,299,0 chrVI 144787 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.45;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1985,240,0 chrVI 144851 . T G 2626 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.04;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2659,312,0 chrVI 144890 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.24;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2867,336,0 chrVI 144966 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2551,300,0 chrVI 145050 . C A 2530 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2563,294,0 chrVI 145086 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2140,255,0 chrVI 145543 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.30;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2408,282,0 chrVI 145567 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.18;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2273,264,0 chrVI 145894 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.75;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3981,462,0 chrVI 146049 . T C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=160;Dels=0.00;FS=9.710;HaplotypeScore=11.7677;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.703;QD=19.89;ReadPosRankSum=2.418;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3216,381,0 chrVI 146074 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.75;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2976,339,0 chrVI 146334 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=17.52;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1960,234,0 chrVI 146341 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.61;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1900,219,0 chrVI 146545 . A G 2517 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.97;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2550,309,0 chrVI 146869 . G C 2731 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.0309;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.08;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2764,333,0 chrVI 146887 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.19;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2623,303,0 chrVI 146926 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.81;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2956,339,0 chrVI 147067 . A T 1721 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=18.12;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1754,207,0 chrVI 147109 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=12.57;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1303,153,0 chrVI 147121 . C T 1206 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=10.96;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1239,141,0 chrVI 147143 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=0.055;QD=12.87;ReadPosRankSum=1.237;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1654,185,0 chrVI 147173 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8880;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.33;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2471,291,0 chrVI 147361 . G T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.35;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3310,395,0 chrVI 147382 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.173;QD=18.91;ReadPosRankSum=1.689;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3077,374,0 chrVI 147466 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.87;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3924,453,0 chrVI 147471 . A T 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=3.405;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.264;QD=21.10;ReadPosRankSum=1.563;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3882,447,0 chrVI 147481 . G A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.12;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3722,443,0 chrVI 147986 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.4812;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.07;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2330,267,0 chrVI 148191 . C G 3818.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3818,455,0 chrVI 148368 . C G 1716 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1749,204,0 chrVI 148492 . A G 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.762;QD=5.00;ReadPosRankSum=1.666;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:2,7:9:9:77,9,0 chrVI 148496 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:80,9,0 chrVI 148509 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=5.62;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:48,6,0 chrVI 148623 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.00;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:77,9,0 chrVI 148636 . A T 44.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.00;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:77,9,0 chrVI 148661 . G A 98.26 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=5.78;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:131,15,0 chrVI 148676 . A G 124.13 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=4.60;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:18:157,18,0 chrVI 148693 . T C 171.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;MQRankSum=-1.494;QD=5.90;ReadPosRankSum=1.614;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:1,28:29:24:204,24,0 chrVI 148699 . T C 146.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-2.023;QD=5.04;ReadPosRankSum=2.281;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:2,27:29:21:179,21,0 chrVI 148700 . C T 148.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=5.11;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:181,21,0 chrVI 148751 . G A 284 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=10.14;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:36:317,36,0 chrVI 148756 . T C 215 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=7.96;SB=-5.002e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:30:248,30,0 chrVI 148828 . C T 954 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=22.71;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:987,111,0 chrVI 148875 . T C 923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.108;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=-0.192;QD=20.51;ReadPosRankSum=1.655;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:956,114,0 chrVI 148876 . T A 924 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=20.53;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:957,114,0 chrVI 149493 . A G 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.881;QD=20.82;ReadPosRankSum=1.712;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3561,414,0 chrVI 149514 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.60;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3435,390,0 chrVI 149610 . T G 2659 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.49;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2692,324,0 chrVI 149613 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.49;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2714,324,0 chrVI 149844 . T A 2330 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.80;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2363,276,0 chrVI 149865 . T A 2111 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.10;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2144,249,0 chrVI 150340 . T C 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=90;Dels=0.00;FS=9.351;HaplotypeScore=4.1843;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.233;QD=21.20;ReadPosRankSum=2.395;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1941,231,0 chrVI 150453 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.33;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2266,273,0 chrVI 150548 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.94;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1937,231,0 chrVI 151218 . A T 2888 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.39;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2921,327,0 chrVI 152137 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.4106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3001,345,0 chrVI 153281 . A T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6622;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.27;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3333,387,0 chrVI 153318 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=15.31;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2345,276,0 chrVI 153323 . T A 2285 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=14.46;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2318,261,0 chrVI 153342 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=4.242;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;MQRankSum=-0.663;QD=12.11;ReadPosRankSum=1.647;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:1995,240,0 chrVI 153344 . A T 1819 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=11.37;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:1852,219,0 chrVI 153974 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.38;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2344,267,0 chrVI 153977 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.127;QD=16.67;ReadPosRankSum=1.704;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2133,255,0 chrVI 154025 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.92;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2663,303,0 chrVI 154357 . C A 470 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.21;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:57:503,57,0 chrVI 154385 . C T 233 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=14.56;SB=-8.100e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:30:266,30,0 chrVI 154409 . A G 680 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.94;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:84:713,84,0 chrVI 154568 . A G 1556 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1589,189,0 chrVI 154644 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.29;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2944,339,0 chrVI 154803 . T C 2532 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.78;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2565,300,0 chrVI 154989 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.31;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3087,345,0 chrVI 155037 . T G 2665 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.49;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2698,318,0 chrVI 155068 . T C 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=3.254;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.575;QD=19.36;ReadPosRankSum=1.701;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2163,258,0 chrVI 155127 . G T 2498 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.48;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2531,285,0 chrVI 155178 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.74;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3216,372,0 chrVI 155241 . T G 3007 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.03;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3040,371,0 chrVI 155336 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.07;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3125,351,0 chrVI 155718 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.66;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2870,330,0 chrVI 156102 . A T 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.826;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.265;QD=21.70;ReadPosRankSum=1.638;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2442,288,0 chrVI 156218 . A G 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=167;Dels=0.00;FS=2.582;HaplotypeScore=6.4053;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.898;QD=19.78;ReadPosRankSum=2.934;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3304,393,0 chrVI 156651 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.13;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3202,369,0 chrVI 156680 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.26;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3279,375,0 chrVI 156780 . A G 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-0.649;QD=19.60;ReadPosRankSum=1.716;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4156,494,0 chrVI 156790 . C G 4233.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.24;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,215:220:99:4233,506,0 chrVI 156928 . C T 4785.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.23;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4785,540,0 chrVI 157188 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.66;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4350,507,0 chrVI 157212 . A G 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.305;QD=21.02;ReadPosRankSum=2.400;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4140,491,0 chrVI 157416 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.623;QD=22.67;ReadPosRankSum=1.705;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2912,348,0 chrVI 157884 . T A 1751 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=17.00;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1784,201,0 chrVI 157913 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=13.35;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1461,177,0 chrVI 158015 . T C 1092 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=61.2455;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=14.96;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1125,135,0 chrVI 158037 . G A 1082 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=114.0480;MLEAC=2;MLEAF=1.00;MQ=36.08;MQ0=0;QD=14.43;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1115,129,0 chrVI 158074 . T C 1342 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=15.98;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1375,168,0 chrVI 158080 . T C 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=7.684;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;MQRankSum=-0.905;QD=16.16;ReadPosRankSum=1.693;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1455,183,0 chrVI 158086 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=17.26;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1638,198,0 chrVI 158256 . A T 664 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=19.53;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:697,81,0 chrVI 158271 . G A 658 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=16.87;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:691,78,0 chrVI 158337 . A G 1307 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=17.43;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1340,159,0 chrVI 158348 . T G 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-1.325;QD=16.96;ReadPosRankSum=1.691;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1475,177,0 chrVI 158505 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=4.461;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=0.321;QD=20.92;ReadPosRankSum=1.668;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3389,407,0 chrVI 158514 . T A 3164 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=20.41;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3197,369,0 chrVI 158535 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=20.51;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3253,372,0 chrVI 158715 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=3.917;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-1.632;QD=19.78;ReadPosRankSum=1.699;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4094,483,0 chrVI 158716 . A G 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=206;Dels=0.00;FS=11.875;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-0.436;QD=20.11;ReadPosRankSum=2.907;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:3,202:206:99:4142,486,0 chrVI 158753 . G T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=14.76;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:4311,492,0 chrVI 158772 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=330;Dels=0.00;FS=2.683;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;MQRankSum=1.491;QD=12.96;ReadPosRankSum=2.420;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:2,328:330:99:4276,509,0 chrVI 158790 . A G 4479.01 SnpCluster AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=12.91;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,347:347:99:4479,548,0 chrVI 158792 . C T 4762.01 SnpCluster AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=13.61;SB=-3.497e+03 GT:AD:DP:GQ:PL 1/1:0,350:350:99:4762,549,0 chrVI 158793 . C T 1813.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.282;DP=358;Dels=0.00;FS=1.292;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=40.98;MQ0=0;MQRankSum=-4.952;QD=5.06;ReadPosRankSum=2.169;SB=-1.359e+03 GT:AD:DP:GQ:PL 0/1:169,189:358:99:1843,0,1676 chrVI 158840 . G T 5866.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=16.34;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,358:359:99:5866,686,0 chrVI 158854 . A G 1928.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.975;DP=334;Dels=0.00;FS=5.071;HaplotypeScore=5.5988;MLEAC=1;MLEAF=0.500;MQ=51.72;MQ0=0;MQRankSum=0.392;QD=5.77;ReadPosRankSum=0.208;SB=-1.207e+03 GT:AD:DP:GQ:PL 0/1:179,155:334:99:1958,0,2543 chrVI 158873 . T C 2416.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.214;DP=294;Dels=0.00;FS=9.033;HaplotypeScore=12.6189;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=0.744;QD=8.22;ReadPosRankSum=1.535;SB=-1.118e+03 GT:AD:DP:GQ:PL 0/1:139,154:294:99:2446,0,2081 chrVI 159144 . A C 1649.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.514;DP=202;Dels=0.00;FS=3.231;HaplotypeScore=15.7736;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=0.297;QD=8.16;ReadPosRankSum=1.789;SB=-6.750e+02 GT:AD:DP:GQ:PL 0/1:100,99:202:99:1679,0,1589 chrVI 159264 . A T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.95;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4105,480,0 chrVI 159554 . A G 5404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=289;Dels=0.00;FS=9.216;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.700;QD=18.70;ReadPosRankSum=2.381;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:2,286:289:99:5404,644,0 chrVI 159556 . A G 5434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=284;Dels=0.00;FS=9.450;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.432;QD=19.13;ReadPosRankSum=2.362;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,279:284:99:5434,644,0 chrVI 159616 . T C 5655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=287;Dels=0.00;FS=2.636;HaplotypeScore=13.0549;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.168;QD=19.70;ReadPosRankSum=2.372;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:2,283:287:99:5655,662,0 chrVI 159744 . C T 7456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=320;Dels=0.00;FS=3.584;HaplotypeScore=14.4089;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.390;QD=23.30;ReadPosRankSum=1.688;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:1,314:320:99:7456,852,0 chrVI 159955 . T G 5240.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=18.3410;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.39;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:5240,641,0 chrVI 160108 . A G 7762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=340;Dels=0.00;FS=10.810;HaplotypeScore=18.2266;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.893;QD=22.83;ReadPosRankSum=2.914;SB=-3.636e+03 GT:AD:DP:GQ:PL 1/1:3,335:340:99:7762,929,0 chrVI 160603 . A C 5527.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.39;SB=-3.192e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:5527,662,0 chrVI 160696 . G A 6928.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=14.2975;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.38;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:6928,809,0 chrVI 161071 . C T 6441.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.76;SB=-3.238e+03 GT:AD:DP:GQ:PL 1/1:0,280:283:99:6441,738,0 chrVI 161110 . G A 4951.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.43;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4951,564,0 chrVI 161167 . T C 5228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=255;Dels=0.00;FS=3.008;HaplotypeScore=16.6950;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.188;QD=20.50;ReadPosRankSum=2.421;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5228,632,0 chrVI 161250 . T A 5260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=256;Dels=0.00;FS=3.079;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.624;QD=20.55;ReadPosRankSum=1.691;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:5260,606,0 chrVI 161261 . G T 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=231;Dels=0.00;FS=3.048;HaplotypeScore=5.0564;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.265;QD=19.50;ReadPosRankSum=1.491;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:4505,536,0 chrVI 161436 . T C 2955 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.24;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2988,351,0 chrVI 161501 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.380;DP=103;Dels=0.00;FS=2.222;HaplotypeScore=13.1001;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=1.238;QD=17.61;ReadPosRankSum=4.639;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:8,95:103:99:1847,216,0 chrVI 161565 . A G 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.826;QD=19.57;ReadPosRankSum=1.679;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1305,156,0 chrVI 161720 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.45;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2525,291,0 chrVI 161754 . G A 908.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;DP=101;Dels=0.00;FS=7.376;HaplotypeScore=6.5040;MLEAC=1;MLEAF=0.500;MQ=53.71;MQ0=0;MQRankSum=-0.896;QD=8.99;ReadPosRankSum=1.587;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:46,54:101:99:938,0,662 chrVI 161767 . A G 2454 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=22.11;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2487,294,0 chrVI 161967 . G C 1148.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.259;DP=126;Dels=0.00;FS=18.786;HaplotypeScore=5.9062;MLEAC=1;MLEAF=0.500;MQ=45.52;MQ0=1;MQRankSum=6.563;QD=9.11;ReadPosRankSum=0.276;SB=-6.450e+02 GT:AD:DP:GQ:PL 0/1:56,70:126:99:1178,0,752 chrVI 161992 . G A 919.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.463;DP=141;Dels=0.00;FS=75.646;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=41.03;MQ0=1;MQRankSum=-8.291;QD=6.52;ReadPosRankSum=-2.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,69:141:99:949,0,1019 chrVI 162010 . C T 1222.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.976;DP=153;Dels=0.00;FS=84.589;HaplotypeScore=10.4810;MLEAC=1;MLEAF=0.500;MQ=40.00;MQ0=1;MQRankSum=8.044;QD=7.99;ReadPosRankSum=-1.513;SB=-6.270e+02 GT:AD:DP:GQ:PL 0/1:65,88:153:99:1252,0,843 chrVI 162052 . T A 1237.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DP=157;Dels=0.00;FS=86.814;HaplotypeScore=11.8737;MLEAC=1;MLEAF=0.500;MQ=39.35;MQ0=0;MQRankSum=7.521;QD=7.88;ReadPosRankSum=1.169;SB=-6.540e+02 GT:AD:DP:GQ:PL 0/1:71,86:157:99:1267,0,986 chrVI 162064 . T A 778.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=140;Dels=0.00;FS=79.916;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=39.80;MQ0=0;MQRankSum=-8.577;QD=5.56;ReadPosRankSum=-1.013;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,61:140:99:808,0,1159 chrVI 162066 . C T 1064.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;DP=137;Dels=0.00;FS=82.421;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=39.24;MQ0=0;MQRankSum=7.871;QD=7.77;ReadPosRankSum=1.789;SB=-7.140e+02 GT:AD:DP:GQ:PL 0/1:62,74:137:99:1094,0,661 chrVI 162175 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=70;Dels=0.00;FS=6.603;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-1.287;QD=20.37;ReadPosRankSum=2.380;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1459,171,0 chrVI 162613 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.5218;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.356;QD=20.90;ReadPosRankSum=-0.723;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3657,423,0 chrVI 162769 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1585;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.91;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3988,456,0 chrVI 162872 . A G 3114 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.04;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3147,372,0 chrVI 163447 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=3.733;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.138;QD=21.48;ReadPosRankSum=1.690;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3544,414,0 chrVI 163655 . T C 4667.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.8349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4667,546,0 chrVI 163957 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3732,443,0 chrVI 164083 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4946;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.02;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3347,381,0 chrVI 164557 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=154;Dels=0.00;FS=6.071;HaplotypeScore=9.7387;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.307;QD=20.24;ReadPosRankSum=2.941;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3150,383,0 chrVI 164883 . G T 2662 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.47;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2695,309,0 chrVI 165037 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3230;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.122;QD=20.90;ReadPosRankSum=1.649;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2687,321,0 chrVI 165879 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=5.2149;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.43;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2566,303,0 chrVI 166317 . T C 2723 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.9269;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.02;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2756,327,0 chrVI 167037 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DP=166;Dels=0.00;FS=8.051;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.022;QD=20.61;ReadPosRankSum=2.331;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3422,384,0 chrVI 167318 . T C 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=117;Dels=0.00;FS=5.798;HaplotypeScore=9.0101;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.152;QD=17.43;ReadPosRankSum=1.702;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,113:117:99:2072,252,0 chrVI 167402 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.56;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1555,174,0 chrVI 167410 . A G 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=2.598;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.427;QD=18.72;ReadPosRankSum=2.260;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1493,180,0 chrVI 167593 . A G 584 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:72:617,72,0 chrVI 167776 . T C 334 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:42:367,42,0 chrVI 168102 . T A 1925 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=22.65;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1958,231,0 chrVI 168104 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=21.94;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1986,242,0 chrVI 168117 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=20.24;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1875,222,0 chrVI 168122 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=18.52;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1904,231,0 chrVI 168217 . A C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=5.091;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.486;QD=21.93;ReadPosRankSum=1.687;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3443,402,0 chrVI 168241 . T C 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.203;DP=199;Dels=0.01;FS=2.391;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.271;QD=20.80;ReadPosRankSum=3.362;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:4,193:198:99:4140,483,0 chrVI 168408 . G C 2977 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=20.0810;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=15.75;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3010,365,0 chrVI 168725 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.67;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2171,249,0 chrVI 168728 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=17.18;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2163,252,0 chrVI 168886 . A T 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.247;QD=18.01;ReadPosRankSum=0.937;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1384,143,0 chrVI 168910 . G A 1317 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.29;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1350,153,0 chrVI 168941 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.27;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1613,183,0 chrVI 169022 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=6.478;HaplotypeScore=10.5961;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.029;QD=16.82;ReadPosRankSum=1.674;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2052,257,0 chrVI 169147 . G C 2409 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.8931;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.59;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2442,288,0 chrVI 169269 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.96;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2933,345,0 chrVI 169332 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.37;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2280,261,0 chrVI 169392 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.8933;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=20.14;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2289,273,0 chrVI 169586 . T C 2285 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=17.05;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2318,279,0 chrVI 169591 . T C 2076 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=16.09;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2109,249,0 chrVI 169592 . T C 1948 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=15.22;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1981,234,0 chrVI 169609 . C T 1478 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=12.21;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1511,168,0 chrVI 169614 . A G 1279 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=113;Dels=0.00;FS=9.998;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.080;QD=11.32;ReadPosRankSum=2.938;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:1312,156,0 chrVI 169617 . T C 1078 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.23;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1111,135,0 chrVI 169618 . G A 1142 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.90;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1175,135,0 chrVI 169635 . A G 951 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.250;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.391;QD=10.23;ReadPosRankSum=1.695;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:984,114,0 chrVI 169641 . G A 1016 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.69;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1049,117,0 chrVI 169642 . C T 957 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.07;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:990,114,0 chrVI 169649 . T G 895 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=9.23;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:928,111,0 chrVI 169653 . G A 910 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=133.3781;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=9.48;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:943,108,0 chrVI 169872 . A G 5110.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=23.23;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5110,600,0 chrVI 169900 . A C 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=216;Dels=0.00;FS=11.941;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=1.461;QD=19.37;ReadPosRankSum=2.404;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4183,506,0 chrVI 169902 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=217;Dels=0.00;FS=2.419;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.181;QD=19.92;ReadPosRankSum=2.940;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:4322,495,0 chrVI 170025 . T C 4987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.601;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.007;QD=20.95;ReadPosRankSum=-1.177;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:4987,588,0 chrVI 170209 . G A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.30;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4730,546,0 chrVI 170473 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.0234;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.37;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3398,393,0 chrVI 170899 . C G 2742 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.9419;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.31;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:2775,338,0 chrVI 171023 . A G 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=3.165;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.351;QD=20.50;ReadPosRankSum=1.708;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2965,348,0 chrVI 171103 . G T 2518 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2551,291,0 chrVI 171241 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2293,273,0 chrVI 171355 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.79;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2494,282,0 chrVI 171434 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2805,318,0 chrVI 171501 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.84;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2771,321,0 chrVI 172334 . G C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.42;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3834,453,0 chrVI 172581 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.62;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2801,321,0 chrVI 172598 . A T 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=133;Dels=0.00;FS=3.040;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.699;QD=18.93;ReadPosRankSum=2.412;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2551,291,0 chrVI 172612 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.038;QD=19.15;ReadPosRankSum=1.656;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2656,306,0 chrVI 172677 . T G 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=123;Dels=0.00;FS=2.753;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.958;QD=20.24;ReadPosRankSum=2.409;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2523,297,0 chrVI 173376 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8665;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.86;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3049,342,0 chrVI 173398 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.81;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2863,330,0 chrVI 173500 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.13;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2999,342,0 chrVI 173599 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2691;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.51;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3548,417,0 chrVI 173765 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=31.5913;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.633;QD=19.08;ReadPosRankSum=0.995;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3377,399,0 chrVI 174034 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=17.5683;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=15.24;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,113:121:99:1877,222,0 chrVI 174110 . C G 1923 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=218.4308;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=15.63;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1956,234,0 chrVI 174484 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.45;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3476,425,0 chrVI 174519 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.1497;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.68;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3816,432,0 chrVI 174556 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.37;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3830,455,0 chrVI 174682 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.47;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3972,447,0 chrVI 174712 . G A 4141.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.03;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4141,471,0 chrVI 174951 . A G 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=225;Dels=0.00;FS=2.936;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=2.209;QD=20.23;ReadPosRankSum=2.362;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4551,537,0 chrVI 175060 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=186;Dels=0.00;FS=6.289;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.323;QD=18.51;ReadPosRankSum=2.355;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,179:186:99:3443,410,0 chrVI 175077 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.20;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3380,402,0 chrVI 175153 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.8790;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.960;QD=20.09;ReadPosRankSum=1.676;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3696,441,0 chrVI 175342 . C A 2959 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.34;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2992,351,0 chrVI 175522 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2436;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.29;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3490,405,0 chrVI 175594 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=17.83;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3189,378,0 chrVI 175597 . G A 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.557;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.294;QD=16.83;ReadPosRankSum=0.719;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:2944,335,0 chrVI 175923 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.7235;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5171,588,0 chrVI 176167 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.1983;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.23;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4331,507,0 chrVI 176296 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.556;QD=20.71;ReadPosRankSum=1.688;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3272,384,0 chrVI 176340 . T C 2264 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=18.7890;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.02;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2297,270,0 chrVI 176410 . G T 2090 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.6935;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=10.25;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:2123,240,0 chrVI 176446 . G C 2874 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=15.21;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:2907,353,0 chrVI 176518 . T C 2422 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.64;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2455,294,0 chrVI 176767 . T G 2961 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.43;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2994,357,0 chrVI 177023 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3089,357,0 chrVI 177366 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.8747;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.16;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3276,398,0 chrVI 177453 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;DP=149;Dels=0.00;FS=3.027;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.822;QD=20.47;ReadPosRankSum=2.317;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3083,371,0 chrVI 177516 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.86;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3071,351,0 chrVI 177638 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.21;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2761,309,0 chrVI 177672 . C T 2200 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=16.79;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2233,258,0 chrVI 177674 . C G 1976 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=15.20;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2009,243,0 chrVI 177675 . C T 2216 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=16.79;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2249,264,0 chrVI 177693 . T C 2475 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=16.18;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2508,303,0 chrVI 177753 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.56;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3290,387,0 chrVI 177798 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.35;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3352,393,0 chrVI 177858 . A G 3040 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.6632;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=19.36;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3073,377,0 chrVI 177999 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.30;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2611,309,0 chrVI 178083 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.498;DP=142;Dels=0.00;FS=5.136;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;MQRankSum=1.742;QD=19.01;ReadPosRankSum=-2.150;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:9,132:142:99:2732,301,0 chrVI 178096 . C T 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=132;Dels=0.00;FS=5.627;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;MQRankSum=2.360;QD=18.96;ReadPosRankSum=-2.017;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:8,124:132:99:2536,271,0 chrVI 178237 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.520;DP=134;Dels=0.00;FS=13.852;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;MQRankSum=-2.470;QD=17.28;ReadPosRankSum=-0.860;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:7,127:134:99:2349,131,0 chrVI 178261 . A C 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.162;DP=141;Dels=0.00;FS=18.167;HaplotypeScore=5.0958;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;MQRankSum=-1.875;QD=18.10;ReadPosRankSum=-3.545;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:7,134:141:99:2585,226,0 chrVI 178297 . T C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=139;Dels=0.00;FS=28.568;HaplotypeScore=9.8616;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=-1.261;QD=16.85;ReadPosRankSum=4.340;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:10,128:139:99:2375,221,0 chrVI 178425 . G C 2227 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=18.71;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2260,264,0 chrVI 178440 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=20.73;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2417,282,0 chrVI 178655 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.05;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2601,297,0 chrVI 178674 . G T 2568 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.75;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2601,306,0 chrVI 178766 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.4732;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.65;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3254,387,0 chrVI 178857 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.08;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3289,390,0 chrVI 178875 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.09;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3183,375,0 chrVI 179064 . T C 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=4.698;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.910;QD=20.01;ReadPosRankSum=1.703;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2394,285,0 chrVI 179094 . A G 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1600;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.576;QD=20.68;ReadPosRankSum=1.701;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2349,279,0 chrVI 179134 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.27;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2174,249,0 chrVI 179207 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.07;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2140,249,0 chrVI 179522 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.68;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2158,252,0 chrVI 179537 . T C 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=135;Dels=0.00;FS=9.109;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.443;QD=17.86;ReadPosRankSum=3.195;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:4,130:135:99:2444,294,0 chrVI 179606 . G C 3863.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.7801;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.12;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:3863,458,0 chrVI 179949 . G T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.64;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4459,530,0 chrVI 179957 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=201;Dels=0.00;FS=6.355;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.907;QD=19.91;ReadPosRankSum=2.116;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4001,488,0 chrVI 179981 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.07;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3280,398,0 chrVI 180152 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.73;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3205,372,0 chrVI 180295 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.570;QD=19.95;ReadPosRankSum=1.662;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3025,354,0 chrVI 180324 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.65;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2381,282,0 chrVI 180546 . T C 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.151;DP=150;Dels=0.00;FS=5.249;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.177;QD=20.46;ReadPosRankSum=3.364;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:4,145:150:99:3102,372,0 chrVI 180611 . G T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.13;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3585,425,0 chrVI 180656 . C G 2568 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.75;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2601,306,0 chrVI 180672 . A G 2333 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.29;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2366,282,0 chrVI 180725 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.68;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2349,276,0 chrVI 180970 . G T 40.97 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=0.54;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:9:73,9,0 chrVI 180971 . G A 43.97 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=0.59;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:9:76,9,0 chrVI 181066 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=16.60;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1593,189,0 chrVI 181094 . A C 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;MQRankSum=-1.121;QD=15.45;ReadPosRankSum=1.691;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1346,159,0 chrVI 181101 . A C 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=65.7226;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;MQRankSum=-1.504;QD=13.32;ReadPosRankSum=1.641;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1045,129,0 chrVI 181123 . G A 940 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.24;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:973,111,0 chrVI 181125 . C T 843 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.77;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:876,105,0 chrVI 181131 . G A 918 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=14.57;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:951,111,0 chrVI 181152 . T C 799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=54;Dels=0.00;FS=18.334;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;MQRankSum=-2.221;QD=14.80;ReadPosRankSum=2.267;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:832,99,0 chrVI 181154 . A C 818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;MQRankSum=0.157;QD=14.61;ReadPosRankSum=2.360;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:2,53:56:99:851,102,0 chrVI 181178 . G T 973 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=15.95;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1006,114,0 chrVI 181357 . G A 178.03 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:24:211,24,0 chrVI 181370 . A G 184.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.668;QD=14.23;ReadPosRankSum=1.470;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,12:13:9:217,9,0 chrVI 181376 . G A 267 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.07;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:300,33,0 chrVI 181389 . A G 218.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DP=100;Dels=0.00;FS=166.453;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.16;MQ0=0;MQRankSum=-0.859;QD=2.18;ReadPosRankSum=5.975;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:86,14:100:63:248,0,63 chrVI 181392 . T C 184.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DP=105;Dels=0.00;FS=169.626;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=34.00;MQ0=0;MQRankSum=0.589;QD=1.75;ReadPosRankSum=5.868;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:91,14:105:79:214,0,79 chrVI 181398 . G T 184.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DP=111;Dels=0.00;FS=173.227;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=35.89;MQ0=0;MQRankSum=-1.852;QD=1.66;ReadPosRankSum=-3.637;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:97,14:111:99:214,0,237 chrVI 181400 . T A 191.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DP=113;Dels=0.00;FS=174.381;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=36.46;MQ0=0;MQRankSum=-2.166;QD=1.69;ReadPosRankSum=-3.769;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:99,14:113:99:221,0,272 chrVI 181404 . G A 169.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.367;DP=108;Dels=0.00;FS=171.453;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=37.46;MQ0=0;MQRankSum=-2.456;QD=1.56;ReadPosRankSum=-5.639;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:94,14:108:99:199,0,392 chrVI 181417 . T A 724 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3089;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;MQRankSum=-1.417;QD=7.78;ReadPosRankSum=2.397;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,91:93:90:757,90,0 chrVI 181645 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=0.749;QD=20.01;ReadPosRankSum=1.708;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2895,339,0 chrVI 181817 . A G 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=72;Dels=0.00;FS=6.727;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=-0.886;QD=16.53;ReadPosRankSum=2.346;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1223,147,0 chrVI 181832 . A G 1171 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=16.26;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1204,144,0 chrVI 181852 . A G 1107 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=15.16;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1140,135,0 chrVI 181854 . G A 1140 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=15.83;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1173,135,0 chrVI 181855 . T C 1121 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.582;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-1.210;QD=15.36;ReadPosRankSum=1.685;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1154,135,0 chrVI 181971 . G C 2048 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=14.7896;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.12;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2081,249,0 chrVI 182036 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.05;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2304,273,0 chrVI 182063 . T A 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.598;QD=21.57;ReadPosRankSum=1.701;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2406,291,0 chrVI 182307 . G A 4855.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.58;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4855,552,0 chrVI 182354 . T C 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.2828;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.017;QD=22.35;ReadPosRankSum=1.648;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4605,548,0 chrVI 182440 . C T 4808.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=10.5361;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.56;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:4808,569,0 chrVI 182459 . A G 5563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=282;Dels=0.00;FS=2.991;HaplotypeScore=11.8968;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.786;QD=19.73;ReadPosRankSum=2.432;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:2,279:282:99:5563,668,0 chrVI 182500 . G A 5443.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=18.2700;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.70;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5443,627,0 chrVI 182752 . C A 5374.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=28.2432;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.93;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5374,618,0 chrVI 182910 . A G 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=1.138;QD=8.29;ReadPosRankSum=2.426;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:2,204:207:99:1750,204,0 chrVI 183010 . A G 602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.797;DP=175;Dels=0.00;FS=34.890;HaplotypeScore=17.5412;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.473;QD=3.44;ReadPosRankSum=5.038;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:10,163:175:78:635,78,0 chrVI 183106 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.128;QD=21.81;ReadPosRankSum=2.356;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4013,474,0 chrVI 183406 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.59;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3625,426,0 chrVI 183476 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=216;Dels=0.00;FS=8.057;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.477;QD=17.00;ReadPosRankSum=3.362;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:4,210:216:99:3672,438,0 chrVI 183482 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.21;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3751,435,0 chrVI 183726 . T G 5462.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=19.5792;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.85;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,259:262:99:5462,662,0 chrVI 183881 . T C 5987.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=16.7112;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.72;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:5987,702,0 chrVI 184083 . G A 4888.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.98;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4888,573,0 chrVI 184158 . T C 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=267;Dels=0.00;FS=7.614;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.844;QD=20.50;ReadPosRankSum=2.422;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:5474,662,0 chrVI 184225 . T C 3533.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=17.84;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3533,431,0 chrVI 184226 . T G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=3.169;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=-0.702;QD=17.59;ReadPosRankSum=1.714;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:3465,422,0 chrVI 184237 . C G 2772 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=14.59;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:2805,338,0 chrVI 184277 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=13.84;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:2662,309,0 chrVI 184289 . C G 2367 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=12.52;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:2400,291,0 chrVI 184291 . T C 2442 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.006;DP=193;Dels=0.00;FS=9.801;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-1.340;QD=12.65;ReadPosRankSum=3.850;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:6,187:193:99:2475,270,0 chrVI 184295 . C T 2560 SnpCluster AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=12.43;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:2593,297,0 chrVI 184476 . C T 3905.01 SnpCluster AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=18.42;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3905,450,0 chrVI 184479 . T C 3749.01 SnpCluster AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=17.85;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3749,455,0 chrVI 184483 . T C 3542.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;MQRankSum=-1.532;QD=17.03;ReadPosRankSum=1.715;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:3542,434,0 chrVI 184798 . C T 5362.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=19.9887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.47;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5362,621,0 chrVI 184858 . T A 4959.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.00;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:4959,576,0 chrVI 184878 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.6528;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.97;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,260:266:99:5045,582,0 chrVI 185422 . A G 5897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=274;Dels=0.00;FS=3.514;HaplotypeScore=13.5966;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.139;QD=21.52;ReadPosRankSum=1.681;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:5897,695,0 chrVI 185498 . T G 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=277;Dels=0.00;FS=3.308;HaplotypeScore=20.6639;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.446;QD=19.83;ReadPosRankSum=1.719;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:1,271:277:99:5492,653,0 chrVI 186097 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.30;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3995,459,0 chrVI 186145 . T A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.83;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3334,384,0 chrVI 186322 . C G 1830 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.87;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1863,216,0 chrVI 186433 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.71;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1373,159,0 chrVI 186478 . C T 1548 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.92;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1581,186,0 chrVI 186589 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.4378;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.453;QD=22.87;ReadPosRankSum=1.709;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3407,407,0 chrVI 186739 . A G 2091 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=17.28;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2124,249,0 chrVI 186748 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8942;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.74;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2001,237,0 chrVI 186936 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.35;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3520,420,0 chrVI 187015 . A C 2672 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.08;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2705,318,0 chrVI 187183 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.2701;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.44;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3538,408,0 chrVI 187189 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.0189;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.15;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3385,387,0 chrVI 187771 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.19;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2186,249,0 chrVI 187948 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6768;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2798,315,0 chrVI 188203 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.70;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2848,327,0 chrVI 188342 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.36;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2470,282,0 chrVI 188423 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.57;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2501,297,0 chrVI 188428 . T G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=117;Dels=0.00;FS=2.943;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.414;QD=18.64;ReadPosRankSum=2.407;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2214,267,0 chrVI 188704 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.99;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2930,333,0 chrVI 189064 . G A 5060.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.8924;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.39;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5060,582,0 chrVI 189156 . G T 4884.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.1433;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.96;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4884,573,0 chrVI 189336 . T G 3924.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.3149;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.25;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:3924,462,0 chrVI 189828 . A C 2031 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.52;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2064,246,0 chrVI 189847 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.78;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2130,246,0 chrVI 190129 . A G 2733 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=18.22;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2766,330,0 chrVI 190159 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=12.56;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1892,222,0 chrVI 190169 . G T 1577 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=10.58;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:1610,189,0 chrVI 190170 . T C 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=2.909;HaplotypeScore=104.3563;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;MQRankSum=-1.680;QD=11.20;ReadPosRankSum=2.400;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:1713,201,0 chrVI 190258 . T C 1773 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5850;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=14.41;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1806,213,0 chrVI 190264 . T C 1732 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=17.8838;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=14.08;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1765,213,0 chrVI 190849 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.96;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2273,261,0 chrVI 191180 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.39;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3190,360,0 chrVI 191409 . A T 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=158;Dels=0.00;FS=3.353;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-1.162;QD=22.21;ReadPosRankSum=1.688;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3509,393,0 chrVI 191439 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0687;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.09;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3238,384,0 chrVI 191505 . A G 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=121;Dels=0.00;FS=10.645;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=1;MQRankSum=-1.095;QD=18.36;ReadPosRankSum=2.408;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:3,116:121:99:2254,267,0 chrVI 191633 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.585;QD=17.91;ReadPosRankSum=1.586;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2576,311,0 chrVI 191634 . A T 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.097;QD=19.06;ReadPosRankSum=2.361;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2683,300,0 chrVI 191655 . T C 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=125;Dels=0.00;FS=13.695;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=0.488;QD=17.09;ReadPosRankSum=2.943;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2169,258,0 chrVI 191847 . G T 2488 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.26;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2521,288,0 chrVI 191860 . T C 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=-0.765;QD=15.34;ReadPosRankSum=2.422;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,173:175:99:2718,321,0 chrVI 191885 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.4396;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=17.11;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3953,450,0 chrVI 191906 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-1.634;QD=14.47;ReadPosRankSum=1.704;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:3588,428,0 chrVI 191914 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-2.442;QD=13.61;ReadPosRankSum=2.971;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:3307,390,0 chrVI 191945 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.4725;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.523;QD=15.58;ReadPosRankSum=2.424;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3072,374,0 chrVI 192279 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.8882;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.72;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4023,471,0 chrVI 192288 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.7496;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.951;QD=18.51;ReadPosRankSum=1.716;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:3961,462,0 chrVI 192323 . C A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.80;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4535,510,0 chrVI 192445 . T C 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=3.137;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.600;QD=20.33;ReadPosRankSum=1.699;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,207:212:99:4311,524,0 chrVI 192534 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.612;QD=19.80;ReadPosRankSum=1.691;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3307,396,0 chrVI 192551 . T A 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=4.826;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.656;QD=18.69;ReadPosRankSum=1.689;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3042,354,0 chrVI 192564 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.855;QD=18.41;ReadPosRankSum=2.417;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,149:154:99:2868,339,0 chrVI 192646 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2455,288,0 chrVI 192732 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=135;Dels=0.00;FS=5.681;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.679;QD=22.68;ReadPosRankSum=2.918;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3095,366,0 chrVI 192850 . A C 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=116;Dels=0.00;FS=11.286;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.198;QD=19.91;ReadPosRankSum=2.386;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2342,279,0 chrVI 192937 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.97;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3273,395,0 chrVI 193023 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.62;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3211,372,0 chrVI 193039 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.78;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2838,336,0 chrVI 193175 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=18.2906;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.15;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:2774,335,0 chrVI 193272 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.10;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3604,405,0 chrVI 193274 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.65;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3334,404,0 chrVI 193303 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=17.64;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2132,255,0 chrVI 193313 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=15.75;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1624,195,0 chrVI 193344 . A G 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-1.695;QD=15.39;ReadPosRankSum=1.695;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1480,177,0 chrVI 193604 . T C 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.818;QD=21.98;ReadPosRankSum=1.694;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2033,240,0 chrVI 193734 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.468;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.693;QD=21.96;ReadPosRankSum=1.710;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3535,423,0 chrVI 193872 . T A 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.024;QD=20.82;ReadPosRankSum=1.683;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2989,351,0 chrVI 193973 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.24;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4227,492,0 chrVI 194109 . A G 6522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=305;Dels=0.00;FS=18.632;HaplotypeScore=20.7359;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.879;QD=21.38;ReadPosRankSum=3.353;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:4,300:305:99:6522,773,0 chrVI 194162 . A G 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=3.222;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.387;QD=19.76;ReadPosRankSum=1.702;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4585,554,0 chrVI 194182 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.03;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4625,560,0 chrVI 194304 . T C 5141.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=12.8976;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.85;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,284:288:99:5141,635,0 chrVI 194319 . C T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.03;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,233:238:99:4528,516,0 chrVI 194320 . G C 4286.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.24;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4286,512,0 chrVI 194350 . A C 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.436;QD=18.82;ReadPosRankSum=1.716;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4178,497,0 chrVI 194520 . C T 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=5.330;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.657;QD=19.86;ReadPosRankSum=-0.776;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2357,279,0 chrVI 194593 . G T 1482 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=18.07;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1515,174,0 chrVI 195150 . T A 4567.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.06;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4567,534,0 chrVI 195375 . T C 5725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=296;Dels=0.00;FS=2.998;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.214;QD=19.34;ReadPosRankSum=2.416;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:2,291:296:99:5725,704,0 chrVI 195395 . G A 5977.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.66;SB=-3.746e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:5977,687,0 chrVI 195471 . T C 5330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=248;Dels=0.00;FS=7.219;HaplotypeScore=24.5816;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.205;QD=21.49;ReadPosRankSum=2.409;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:2,243:248:99:5330,638,0 chrVI 195636 . T A 5137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=238;Dels=0.00;FS=3.197;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.514;QD=21.58;ReadPosRankSum=1.703;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5137,605,0 chrVI 195711 . A G 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=253;Dels=0.00;FS=6.354;HaplotypeScore=11.2249;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.859;QD=22.00;ReadPosRankSum=2.430;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:5567,654,0 chrVI 196194 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=167;Dels=0.00;FS=6.642;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.155;QD=18.03;ReadPosRankSum=2.405;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3044,365,0 chrVI 196491 . A T 2356 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=21.42;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2389,270,0 chrVI 196563 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.96;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3087,354,0 chrVI 196793 . G C 2975 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=20.10;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3008,365,0 chrVI 196797 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=21.47;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3082,354,0 chrVI 196820 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=15.91;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1847,213,0 chrVI 196830 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=11.97;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1422,165,0 chrVI 196844 . T C 1756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1342;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;MQRankSum=-0.782;QD=14.16;ReadPosRankSum=1.704;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1789,213,0 chrVI 197027 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.14;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3896,447,0 chrVI 197428 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.980;QD=21.14;ReadPosRankSum=1.678;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2760,333,0 chrVI 197486 . A T 2565 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2598,300,0 chrVI 197726 . A T 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.294;QD=22.03;ReadPosRankSum=1.710;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3502,414,0 chrVI 198468 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.6217;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.08;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4578,528,0 chrVI 199207 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.24;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2539,294,0 chrVI 199246 . T C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=105;Dels=0.00;FS=4.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.757;QD=19.62;ReadPosRankSum=1.698;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2093,246,0 chrVI 199247 . G C 1844 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=17.90;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1877,225,0 chrVI 199316 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=16.50;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1650,186,0 chrVI 199339 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=60.3044;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=13.42;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1066,126,0 chrVI 199470 . C A 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=99;Dels=0.01;FS=1.335;HaplotypeScore=8.6784;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.006;QD=13.45;ReadPosRankSum=-0.942;SB=-7.429e+02 GT:AD:DP:GQ:PL 1/1:10,86:98:99:1365,162,0 chrVI 200419 . T C 2212 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2245,264,0 chrVI 200563 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2431,282,0 chrVI 200767 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.45;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1414,159,0 chrVI 200839 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.27;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1748,201,0 chrVI 201607 . A C 952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.525;QD=19.04;ReadPosRankSum=1.663;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:985,117,0 chrVI 201948 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.25;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2179,249,0 chrVI 201955 . A C 1860 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=17.38;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1893,231,0 chrVI 201959 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.56;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1912,222,0 chrVI 202421 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.46;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3913,470,0 chrVI 202437 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.9228;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.56;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,208:213:99:3741,441,0 chrVI 202500 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=265;Dels=0.00;FS=3.011;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.102;QD=16.90;ReadPosRankSum=2.422;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:4479,551,0 chrVI 202731 . T A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.18;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3472,405,0 chrVI 202970 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.244;QD=21.19;ReadPosRankSum=1.709;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3190,375,0 chrVI 203115 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2944,333,0 chrVI 203172 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.31;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1937,228,0 chrVI 203253 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.36;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2789,312,0 chrVI 203623 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.96;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2788,315,0 chrVI 203665 . A G 2404 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2437,291,0 chrVI 203799 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.45;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3743,432,0 chrVI 203808 . G C 3701.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.68;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:3701,443,0 chrVI 203845 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=160;Dels=0.00;FS=9.819;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.822;QD=20.86;ReadPosRankSum=2.388;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3338,407,0 chrVI 204006 . G C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.3790;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.34;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3848,461,0 chrVI 204061 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=183;Dels=0.00;FS=6.092;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.134;QD=19.09;ReadPosRankSum=2.396;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3493,414,0 chrVI 204282 . G C 4200.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.6751;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.11;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4200,495,0 chrVI 204454 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.28;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3894,447,0 chrVI 204676 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=199;Dels=0.00;FS=6.046;HaplotypeScore=9.5857;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=1.258;QD=20.98;ReadPosRankSum=2.904;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4175,494,0 chrVI 204767 . A G 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;MQRankSum=-1.131;QD=19.30;ReadPosRankSum=2.417;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:2,149:152:99:2967,345,0 chrVI 204770 . G C 2730 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=17.39;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2763,332,0 chrVI 204826 . A G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.6510;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=-1.185;QD=15.12;ReadPosRankSum=2.917;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:3,155:158:99:2422,279,0 chrVI 204894 . G T 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=109;Dels=0.00;FS=8.016;HaplotypeScore=10.6316;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;MQRankSum=-3.086;QD=15.02;ReadPosRankSum=3.376;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:4,105:109:99:1670,198,0 chrVI 204909 . A T 294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.079;DP=105;Dels=0.00;FS=1.851;HaplotypeScore=62.4981;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;MQRankSum=-0.759;QD=2.80;ReadPosRankSum=7.306;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:27,78:105:42:327,42,0 chrVI 204998 . A C 2906 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=22.35;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2939,348,0 chrVI 205046 . A G 1923 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=20.68;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1956,240,0 chrVI 205058 . G C 2148 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=20.65;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2181,261,0 chrVI 205105 . G C 2192 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=19.40;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2225,264,0 chrVI 205164 . T C 2413 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=15.98;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2446,291,0 chrVI 205276 . G A 224 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=2.31;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:30:257,30,0 chrVI 205293 . C T 806 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=7.33;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:96:839,96,0 chrVI 205395 . C A 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.561;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.9770;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.159;QD=21.10;ReadPosRankSum=0.650;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3355,362,0 chrVI 205431 . G A 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.238;DP=153;Dels=0.00;FS=4.523;HaplotypeScore=13.6539;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-1.189;QD=20.10;ReadPosRankSum=-0.192;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3108,354,0 chrVI 205576 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.15;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3519,399,0 chrVI 205702 . T A 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.156;DP=109;Dels=0.00;FS=9.229;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.011;QD=19.13;ReadPosRankSum=2.224;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2118,246,0 chrVI 205793 . A C 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.092;DP=120;Dels=0.00;FS=12.869;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.060;QD=21.04;ReadPosRankSum=3.384;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2558,303,0 chrVI 205932 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.27;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3058,371,0 chrVI 205970 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.644;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.561;QD=21.27;ReadPosRankSum=1.711;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3445,413,0 chrVI 206097 . G A 4106.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.9205;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.39;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4106,471,0 chrVI 206474 . A G 4462.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.5122;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.36;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4462,530,0 chrVI 206548 . C T 5066.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.82;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5066,585,0 chrVI 206614 . C T 4845.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.44;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4845,558,0 chrVI 206706 . C T 5019.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.9182;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.73;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5019,599,0 chrVI 206775 . C G 4056.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.4002;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.91;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4056,482,0 chrVI 206888 . A T 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.967;QD=20.67;ReadPosRankSum=1.690;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3369,390,0 chrVI 206905 . T G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.655;QD=19.00;ReadPosRankSum=1.605;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3149,375,0 chrVI 206918 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.680;QD=19.78;ReadPosRankSum=2.417;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3020,360,0 chrVI 207041 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.95;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2714,318,0 chrVI 207059 . T C 2511 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.09;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2544,303,0 chrVI 207080 . T C 2490 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.18;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2523,300,0 chrVI 207279 . G A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.16;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4084,477,0 chrVI 207354 . T C 4633.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.16;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4633,551,0 chrVI 207374 . G C 4318.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.7054;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.37;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4318,524,0 chrVI 207456 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=156;Dels=0.00;FS=6.049;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.953;QD=19.42;ReadPosRankSum=2.355;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3063,363,0 chrVI 207472 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.5089;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.69;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3183,363,0 chrVI 207745 . C G 3863.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=17.5073;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.32;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,194:200:99:3863,473,0 chrVI 207760 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.31;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3514,414,0 chrVI 207790 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.56;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3359,390,0 chrVI 207823 . T C 2243 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0895;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=14.02;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2276,284,0 chrVI 207856 . A G 1994 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-1.039;QD=12.31;ReadPosRankSum=2.328;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:2027,243,0 chrVI 207862 . G A 1849 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.2572;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=11.48;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:1882,225,0 chrVI 207865 . T C 1689 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=5.661;HaplotypeScore=7.6733;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-0.834;QD=10.43;ReadPosRankSum=1.711;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:1722,210,0 chrVI 207985 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.40;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2644,300,0 chrVI 208075 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=20.6928;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.140;QD=21.29;ReadPosRankSum=2.424;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4151,491,0 chrVI 208153 . A T 2701 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.94;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2734,318,0 chrVI 208165 . T C 2048 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.12;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2081,255,0 chrVI 208303 . T A 2433 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2466,285,0 chrVI 208338 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.92;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1467,171,0 chrVI 208668 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.92;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3933,476,0 chrVI 209238 . A C 2816 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.5376;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.56;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2849,339,0 chrVI 209430 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3593,428,0 chrVI 210003 . T C 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.225;QD=21.29;ReadPosRankSum=1.668;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2332,284,0 chrVI 210544 . T C 2170 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=16.82;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2203,267,0 chrVI 210590 . T C 1654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.908;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-0.818;QD=18.18;ReadPosRankSum=1.313;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1687,207,0 chrVI 210664 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=23.37;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1856,207,0 chrVI 210721 . T C 1574 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=19.92;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1607,195,0 chrVI 210741 . T A 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=-0.162;QD=20.84;ReadPosRankSum=1.640;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1596,189,0 chrVI 210742 . C G 1592 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=20.95;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1625,192,0 chrVI 210967 . C G 4516.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.2613;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.72;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4516,554,0 chrVI 211149 . G A 6586.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6586,753,0 chrVI 211344 . A G 5837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=294;Dels=0.00;FS=3.130;HaplotypeScore=15.9402;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.094;QD=19.85;ReadPosRankSum=1.697;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:5837,713,0 chrVI 211545 . G A 5425.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=17.8123;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.47;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5425,624,0 chrVI 211652 . T C 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=257;Dels=0.00;FS=4.703;HaplotypeScore=18.0069;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.518;QD=18.21;ReadPosRankSum=1.705;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,253:257:99:4681,549,0 chrVI 211974 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.11;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4230,477,0 chrVI 212097 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.26;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3848,447,0 chrVI 212115 . A T 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=181;Dels=0.00;FS=3.386;HaplotypeScore=4.3394;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.062;QD=20.57;ReadPosRankSum=1.694;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3723,432,0 chrVI 212520 . A G 6070.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=26.3151;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.99;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6070,716,0 chrVI 212940 . A G 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.397;QD=20.89;ReadPosRankSum=1.715;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4324,509,0 chrVI 213216 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.98;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4177,489,0 chrVI 213250 . G C 4179.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.5083;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.21;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4179,503,0 chrVI 213465 . C T 4415.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.7849;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.97;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4415,501,0 chrVI 213539 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.8471;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.39;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3365,399,0 chrVI 213776 . T C 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=223;Dels=0.00;FS=8.975;HaplotypeScore=13.3737;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.488;QD=21.17;ReadPosRankSum=3.373;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:4,216:222:99:4721,563,0 chrVI 214043 . T C 2862 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=17.14;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2895,350,0 chrVI 214046 . T C 2918 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=3.233;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=-0.541;QD=17.90;ReadPosRankSum=1.667;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:2951,359,0 chrVI 214052 . G A 2883 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=16.86;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2916,336,0 chrVI 214157 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.31;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3380,410,0 chrVI 214378 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.5895;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.46;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3822,444,0 chrVI 214382 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.059;QD=17.44;ReadPosRankSum=1.698;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:3610,440,0 chrVI 214532 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.71;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3800,441,0 chrVI 214589 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=196;Dels=0.00;FS=2.996;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.959;QD=20.36;ReadPosRankSum=2.399;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3990,468,0 chrVI 214808 . A G 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.9562;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.006;QD=20.56;ReadPosRankSum=1.336;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:3,192:198:99:4070,480,0 chrVI 214843 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.66;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3704,420,0 chrVI 215586 . T A 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.01;FS=3.381;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.882;QD=19.80;ReadPosRankSum=1.689;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3220,366,0 chrVI 215587 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.80;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3221,363,0 chrVI 215801 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=199;Dels=0.00;FS=8.318;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.338;QD=20.14;ReadPosRankSum=3.399;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:4008,491,0 chrVI 215867 . A G 4650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=4.467;HaplotypeScore=11.8167;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.042;QD=22.36;ReadPosRankSum=1.715;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4650,546,0 chrVI 216508 . C T 562 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=19.38;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:595,69,0 chrVI 216513 . G A 570 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=19.00;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:603,69,0 chrVI 216519 . C A 495 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=16.50;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:528,63,0 chrVI 216522 . T C 417 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=14.38;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:450,54,0 chrVI 216530 . C A 330 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=12.22;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:42:363,42,0 chrVI 216563 . C T 633 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=16.23;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:75:666,75,0 chrVI 216585 . A T 1421 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.01;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1454,165,0 chrVI 216669 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.3039;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.41;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1972,234,0 chrVI 216972 . T A 2819 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.68;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2852,333,0 chrVI 217173 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.25;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2584,309,0 chrVI 217258 . C A 2319 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.09;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2352,273,0 chrVI 217312 . A C 2360 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.45;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2393,279,0 chrVI 217387 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2435,279,0 chrVI 217578 . A T 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=4.737;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.430;QD=22.77;ReadPosRankSum=1.704;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2879,333,0 chrVI 217722 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.8164;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.93;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3329,398,0 chrVI 217787 . C G 3662.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2830;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.69;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3662,443,0 chrVI 218127 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2569,288,0 chrVI 218244 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.98;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2890,336,0 chrVI 218261 . C G 2794 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.14;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:2827,339,0 chrVI 218594 . T C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.368;HaplotypeScore=15.2746;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.383;QD=20.68;ReadPosRankSum=1.682;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2908,339,0 chrVI 218679 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=170;Dels=0.00;FS=15.714;HaplotypeScore=10.0141;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.395;QD=19.68;ReadPosRankSum=2.910;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3346,404,0 chrVI 218724 . T G 2968 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3741;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=17.67;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3001,354,0 chrVI 218730 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.46;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3115,357,0 chrVI 218751 . A G 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=158;Dels=0.00;FS=7.917;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.386;QD=15.72;ReadPosRankSum=2.355;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:2516,305,0 chrVI 219393 . T A 2849 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2882,327,0 chrVI 219747 . A G 3162 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3195,386,0 chrVI 219786 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.5822;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:4012,468,0 chrVI 220148 . C T 4244.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.22;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4244,483,0 chrVI 220253 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.86;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1803,210,0 chrVI 220309 . G A 758 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=53.8226;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=9.02;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:93:791,93,0 chrVI 221044 . A G 4804.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.44;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4804,575,0 chrVI 221384 . A T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.9038;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.70;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3451,396,0 chrVI 221478 . T A 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=1.653;QD=19.11;ReadPosRankSum=1.706;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2555,297,0 chrVI 221528 . C G 2853 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=16.21;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:2886,339,0 chrVI 221542 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=16.06;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3404,402,0 chrVI 221657 . T A 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.2933;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;MQRankSum=0.025;QD=23.54;ReadPosRankSum=1.699;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4873,558,0 chrVI 221706 . G T 3041 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=19.62;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3074,357,0 chrVI 221739 . A T 2827 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=15.71;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2860,341,0 chrVI 221751 . A G 2595 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;MQRankSum=1.237;QD=14.83;ReadPosRankSum=1.712;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:2628,317,0 chrVI 221754 . A G 2620 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=14.80;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2653,323,0 chrVI 221758 . G T 2884 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=16.29;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2917,336,0 chrVI 221849 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=17.77;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2699,315,0 chrVI 221860 . T G 2240 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=16.72;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2273,270,0 chrVI 221864 . C A 2155 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;QD=16.97;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2188,246,0 chrVI 221877 . A G 145.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.801;DP=115;Dels=0.00;FS=4.527;HaplotypeScore=84.6739;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=-1.091;QD=1.26;ReadPosRankSum=-4.511;SB=2.97 GT:AD:DP:GQ:PL 1/1:98,17:115:24:178,24,0 chrVI 221898 . C T 910 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.96;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:943,114,0 chrVI 221904 . G A 908 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=63.0672;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.94;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:941,111,0 chrVI 222095 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.866;QD=19.77;ReadPosRankSum=2.394;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2662,315,0 chrVI 222102 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.22;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2513,297,0 chrVI 222167 . G T 2196 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=17.02;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2229,258,0 chrVI 222477 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=153;Dels=0.00;FS=2.991;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.461;QD=19.33;ReadPosRankSum=2.288;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:2990,354,0 chrVI 222612 . T A 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=169;Dels=0.00;FS=9.075;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.487;QD=20.54;ReadPosRankSum=3.366;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3471,414,0 chrVI 222725 . T C 5418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=247;Dels=0.00;FS=2.574;HaplotypeScore=24.5524;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.931;QD=21.94;ReadPosRankSum=2.963;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:3,243:247:99:5418,644,0 chrVI 222940 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6409;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.380;QD=18.66;ReadPosRankSum=-0.891;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3322,393,0 chrVI 223291 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4322;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.46;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2115,258,0 chrVI 223531 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.37;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3789,450,0 chrVI 223558 . T G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.54;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3673,443,0 chrVI 223659 . C T 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.117;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.469;QD=19.75;ReadPosRankSum=1.214;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2166,231,0 chrVI 224053 . A G 598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.454;QD=14.59;ReadPosRankSum=1.967;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:2,39:41:75:631,75,0 chrVI 224085 . T C 623 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=15.57;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:81:656,81,0 chrVI 224275 . T C 1226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.604;QD=22.70;ReadPosRankSum=1.604;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1259,147,0 chrVI 224581 . A G 4594.01 SnpCluster AC=2;AF=1.00;AN=2;DP=313;Dels=0.02;FS=0.000;HaplotypeScore=34.5046;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=14.68;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:4594,572,0 chrVI 224584 . A G 4531.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;DP=315;Dels=0.02;FS=1.634;HaplotypeScore=30.7504;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-2.831;QD=14.38;ReadPosRankSum=2.808;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:6,304:310:99:4531,563,0 chrVI 224587 . A G 4408.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.171;DP=316;Dels=0.00;FS=1.920;HaplotypeScore=35.6040;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=-1.021;QD=13.95;ReadPosRankSum=2.034;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:4,307:316:99:4408,545,0 chrVI 224599 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.513;DP=317;Dels=0.00;FS=5.823;HaplotypeScore=8.9661;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;MQRankSum=-0.787;QD=13.87;ReadPosRankSum=2.723;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:3,312:317:99:4398,515,0 chrVI 225030 . A C 6244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.622;DP=317;Dels=0.00;FS=22.977;HaplotypeScore=36.0907;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.707;QD=19.70;ReadPosRankSum=3.809;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:5,311:317:99:6244,740,0 chrVI 225130 . T C 7755.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.644;DP=389;Dels=0.00;FS=7.867;HaplotypeScore=23.6492;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=0.219;QD=19.94;ReadPosRankSum=3.785;SB=-3.455e+03 GT:AD:DP:GQ:PL 1/1:5,383:389:99:7755,940,0 chrVI 225313 . C T 5649.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=24.8273;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.91;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,334:334:99:5649,657,0 chrVI 225428 . A G 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=256;Dels=0.00;FS=2.607;HaplotypeScore=18.1766;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.236;QD=17.86;ReadPosRankSum=2.373;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:4572,560,0 chrVI 225457 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=214;Dels=0.00;FS=13.291;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.120;QD=17.98;ReadPosRankSum=2.957;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:3,206:213:99:3847,467,0 chrVI 226036 . G C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.0641;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.07;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:4210,512,0 chrVI 226142 . A T 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.105;DP=191;Dels=0.00;FS=10.512;HaplotypeScore=642.2040;MLEAC=1;MLEAF=0.500;MQ=56.27;MQ0=0;MQRankSum=1.397;QD=0.31;ReadPosRankSum=-6.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,25:191:89:89,0,402 chrVI 226370 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=223;Dels=0.00;FS=3.293;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.092;QD=20.26;ReadPosRankSum=1.654;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:4518,534,0 chrVI 226615 . A C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.203;QD=19.89;ReadPosRankSum=1.701;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,110:114:99:2301,276,0 chrVI 226776 . T A 1098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;MQRankSum=-0.308;QD=13.07;ReadPosRankSum=2.333;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1131,132,0 chrVI 226791 . G A 819 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=9.87;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:852,99,0 chrVI 226795 . C T 762 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=10.30;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:93:795,93,0 chrVI 226796 . A G 734 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=9.92;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:93:767,93,0 chrVI 226797 . C T 785 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=10.61;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:93:818,93,0 chrVI 226804 . C A 837 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.73;MQ0=0;QD=8.54;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:870,102,0 chrVI 226919 . G A 4945.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.38;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4945,576,0 chrVI 227043 . A G 4575.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.7398;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.80;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4575,542,0 chrVI 227223 . G T 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.084;QD=19.51;ReadPosRankSum=0.824;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4019,452,0 chrVI 227543 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2465,285,0 chrVI 227587 . C G 3084 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.35;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3117,380,0 chrVI 228092 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=208;Dels=0.01;FS=11.850;HaplotypeScore=8.6923;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-1.611;QD=14.68;ReadPosRankSum=2.243;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,200:205:99:3086,366,0 chrVI 228093 . C T 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=205;Dels=0.00;FS=2.417;HaplotypeScore=6.7794;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-1.741;QD=14.89;ReadPosRankSum=2.786;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:3,199:204:99:3086,360,0 chrVI 228299 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.854;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.020;QD=21.94;ReadPosRankSum=1.712;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3730,441,0 chrVI 228349 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.83;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3859,464,0 chrVI 228509 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.85;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3767,458,0 chrVI 228515 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=215;Dels=0.00;FS=7.049;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.262;QD=17.60;ReadPosRankSum=2.426;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,209:215:99:3783,447,0 chrVI 228554 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.3173;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.11;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3956,465,0 chrVI 228605 . C T 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.9811;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.818;QD=19.13;ReadPosRankSum=0.266;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3190,369,0 chrVI 228617 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.324;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.947;QD=18.45;ReadPosRankSum=1.591;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3224,384,0 chrVI 229028 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.56;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3947,476,0 chrVI 229247 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3557,408,0 chrVI 229320 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3624,414,0 chrVI 229559 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.28;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3874,473,0 chrVI 229616 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.8989;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.17;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4827,555,0 chrVI 229665 . C G 4531.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.69;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4531,536,0 chrVI 229709 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.26;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3907,447,0 chrVI 229802 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.78;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3148,360,0 chrVI 229838 . T A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.33;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3706,420,0 chrVI 229991 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2684,318,0 chrVI 230223 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.57;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2899,333,0 chrVI 230273 . T C 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=4.089;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.035;QD=21.67;ReadPosRankSum=1.697;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2200,258,0 chrVI 230462 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.74;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1794,204,0 chrVI 230627 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.73;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2169,252,0 chrVI 230867 . A G 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=0.151;QD=20.05;ReadPosRankSum=1.698;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2098,249,0 chrVI 230870 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.09;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2037,240,0 chrVI 230891 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=17.64;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1568,180,0 chrVI 230918 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=14.04;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1198,144,0 chrVI 230939 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=16.07;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1351,153,0 chrVI 231098 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.72;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2140,252,0 chrVI 231278 . T C 2659 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.16;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2692,324,0 chrVI 231344 . T C 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.148;QD=20.43;ReadPosRankSum=1.658;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2893,356,0 chrVI 231638 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3235,372,0 chrVI 231775 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.5676;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.933;QD=21.44;ReadPosRankSum=1.703;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2541,303,0 chrVI 232381 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2693,312,0 chrVI 232615 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.999;QD=22.98;ReadPosRankSum=2.408;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,115:120:99:2791,324,0 chrVI 232697 . T C 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.732;QD=19.13;ReadPosRankSum=1.678;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2482,297,0 chrVI 233456 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.54;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2661,306,0 chrVI 233643 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.54;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2251,261,0 chrVI 233711 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1847,222,0 chrVI 233768 . T G 1815 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1848,219,0 chrVI 233830 . T C 2283 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.60;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2316,273,0 chrVI 233977 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1767,210,0 chrVI 234009 . A C 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=3.782;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.121;QD=21.39;ReadPosRankSum=1.652;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1894,211,0 chrVI 234085 . G C 1246 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.9000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.47;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1279,153,0 chrVI 234160 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2061,237,0 chrVI 234589 . T A 3014 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.32;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3047,351,0 chrVI 234593 . T C 2938 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.20;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:2971,345,0 chrVI 234694 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.28;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2730,327,0 chrVI 234904 . A G 4137.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.89;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4137,506,0 chrVI 234914 . G A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.9036;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.20;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4367,498,0 chrVI 235114 . A G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.083;DP=159;Dels=0.00;FS=2.380;HaplotypeScore=10.6321;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.094;QD=17.67;ReadPosRankSum=2.773;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:4,154:159:99:2843,323,0 chrVI 235342 . A G 1783 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.03;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1816,219,0 chrVI 235390 . A G 2379 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.43;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2412,293,0 chrVI 235446 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.79;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3041,345,0 chrVI 235489 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.65;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3046,354,0 chrVI 235720 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.69;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2220,264,0 chrVI 235771 . C G 2025 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.75;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2058,243,0 chrVI 235813 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.76;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1862,213,0 chrVI 235957 . A G 2907 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.86;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2940,351,0 chrVI 236173 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.08;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2885,327,0 chrVI 236191 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.4668;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.75;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2857,327,0 chrVI 236255 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.70;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2315,267,0 chrVI 236256 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.49;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2252,267,0 chrVI 236557 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.41;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1981,225,0 chrVI 236578 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=16.92;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1776,204,0 chrVI 236905 . A T 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.364;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.618;QD=23.25;ReadPosRankSum=1.672;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2707,315,0 chrVI 237141 . G A 969 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=37.3968;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1002,114,0 chrVI 237432 . G A 1615 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1648,186,0 chrVI 237452 . C G 1202 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=13.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1235,150,0 chrVI 237463 . T A 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.014;QD=16.38;ReadPosRankSum=2.369;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1524,158,0 chrVI 237488 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=16.24;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1754,213,0 chrVI 237962 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2520,288,0 chrVI 238279 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.50;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1624,192,0 chrVI 238329 . C A 1996 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2029,240,0 chrVI 238462 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2192,255,0 chrVI 238621 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.208;QD=20.71;ReadPosRankSum=1.687;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3181,386,0 chrVI 238707 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=146;Dels=0.00;FS=3.101;HaplotypeScore=11.2985;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.517;QD=20.17;ReadPosRankSum=1.660;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2978,351,0 chrVI 238877 . A C 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.129;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.819;QD=20.60;ReadPosRankSum=1.685;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3102,366,0 chrVI 238901 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=129;Dels=0.00;FS=3.031;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.982;QD=18.90;ReadPosRankSum=2.392;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2471,302,0 chrVI 239066 . C T 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=109;Dels=0.00;FS=5.149;HaplotypeScore=14.3407;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.700;QD=20.27;ReadPosRankSum=1.476;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2242,236,0 chrVI 239639 . C G 2655 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.31;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2688,326,0 chrVI 239696 . A G 2425 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.25;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2458,288,0 chrVI 239766 . A G 1887 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.8046;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.20;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1920,228,0 chrVI 239828 . G T 1416 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.23;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1449,168,0 chrVI 239854 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.28;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1208,150,0 chrVI 239986 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.24;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2101,240,0 chrVI 240289 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=18.3244;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.00;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4327,510,0 chrVI 240352 . G C 3961.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.51;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3961,479,0 chrVI 240364 . C A 3183 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=16.32;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3216,386,0 chrVI 240385 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.4477;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.09;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3401,396,0 chrVI 240682 . G T 5524.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=16.0770;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.31;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:0,268:272:99:5524,650,0 chrVI 240940 . A G 4532.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.5520;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.11;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4532,534,0 chrVI 240973 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.63;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4262,495,0 chrVI 241102 . A G 4757.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.0791;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.86;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4757,587,0 chrVI 241183 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.3566;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.92;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3578,420,0 chrVI 241206 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.1548;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.32;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3475,402,0 chrVI 241521 . T C 283.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.799;DP=108;Dels=0.00;FS=1.881;HaplotypeScore=18.7497;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-2.426;QD=2.62;ReadPosRankSum=0.136;SB=-1.391e+02 GT:AD:DP:GQ:PL 1/1:82,25:108:1:312,1,0 chrVI 241690 . G C 2458 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.56;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2491,297,0 chrVI 241793 . A G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.264;QD=20.51;ReadPosRankSum=1.694;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1920,234,0 chrVI 241821 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.50;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1905,219,0 chrVI 241822 . T C 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=3.231;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-0.840;QD=18.19;ReadPosRankSum=1.664;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1870,222,0 chrVI 241949 . T C 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.7431;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.780;QD=21.38;ReadPosRankSum=1.694;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1979,234,0 chrVI 241984 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.72;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2205,252,0 chrVI 242028 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=100.3638;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.26;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2241,258,0 chrVI 242330 . C A 2353 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0172;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.77;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2386,273,0 chrVI 242358 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.08;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2778,315,0 chrVI 242547 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.57;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3341,384,0 chrVI 242591 . G T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=20.7396;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.42;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3770,438,0 chrVI 242843 . C G 3782.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3782,461,0 chrVI 242888 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.3624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3355,407,0 chrVI 243009 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=20.15;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2149,258,0 chrVI 243383 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=12.206;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.250;QD=20.30;ReadPosRankSum=2.926;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3058,360,0 chrVI 243400 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.67;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3133,360,0 chrVI 243551 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.8745;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.69;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4424,510,0 chrVI 243659 . T A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.9845;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.04;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3927,456,0 chrVI 243667 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.66;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3863,444,0 chrVI 243783 . C T 5626.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.96;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5626,645,0 chrVI 243805 . T G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=208;Dels=0.00;FS=2.721;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.155;QD=20.36;ReadPosRankSum=2.353;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,201:208:99:4234,509,0 chrVI 244123 . T C 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.150;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.247;QD=20.07;ReadPosRankSum=1.656;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1859,222,0 chrVI 244210 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.333;QD=17.70;ReadPosRankSum=1.666;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1874,222,0 chrVI 244268 . C A 2522 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.67;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2555,294,0 chrVI 244360 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=19.66;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1960,228,0 chrVI 244369 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=16.09;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1513,177,0 chrVI 244374 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=15.15;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1563,183,0 chrVI 244420 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=16.14;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2406,279,0 chrVI 244444 . A T 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=167;Dels=0.00;FS=6.985;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.655;QD=17.14;ReadPosRankSum=2.347;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:2895,342,0 chrVI 245103 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8918;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=20.06;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2480,285,0 chrVI 245159 . A G 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=196.2650;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.088;QD=16.04;ReadPosRankSum=2.453;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2247,267,0 chrVI 245286 . G C 2687 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.02;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2720,327,0 chrVI 245484 . T G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=126;Dels=0.00;FS=4.379;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.438;QD=19.10;ReadPosRankSum=3.093;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:4,121:126:99:2439,267,0 chrVI 245505 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.08;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2815,327,0 chrVI 245636 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.3281;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.16;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2297,267,0 chrVI 245661 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.17;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2583,294,0 chrVI 245901 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.13;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1334,159,0 chrVI 245922 . A C 862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.495;QD=15.39;ReadPosRankSum=1.670;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:895,108,0 chrVI 245962 . T A 818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.559;DP=62;Dels=0.00;FS=4.109;HaplotypeScore=9.9252;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.836;QD=13.19;ReadPosRankSum=1.887;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:5,57:62:81:851,81,0 chrVI 246034 . A T 2507 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2540,291,0 chrVI 246259 . A C 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=2.839;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.236;QD=21.42;ReadPosRankSum=2.378;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3010,351,0 chrVI 246293 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3272,381,0 chrVI 246533 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.06;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2989,345,0 chrVI 246625 . G A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4849;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.34;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3819,444,0 chrVI 246893 . A G 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=98;Dels=0.00;FS=3.018;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.206;QD=21.02;ReadPosRankSum=2.399;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,95:98:99:2093,249,0 chrVI 247017 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.69;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2159,246,0 chrVI 247084 . T C 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.0320;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.147;QD=20.07;ReadPosRankSum=1.098;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1458,149,0 chrVI 247271 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.13;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1318,150,0 chrVI 247274 . A G 1247 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=16.41;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1280,153,0 chrVI 247300 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=16.92;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1268,150,0 chrVI 247354 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.92;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1082,123,0 chrVI 247915 . A G 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=131;Dels=0.00;FS=6.468;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=2.185;QD=19.64;ReadPosRankSum=2.298;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2606,312,0 chrVI 248146 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.32;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2016,228,0 chrVI 248195 . G T 1716 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.19;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1749,201,0 chrVI 248365 . A G 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=84;Dels=0.00;FS=3.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.015;QD=21.40;ReadPosRankSum=2.391;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1831,216,0 chrVI 248816 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.59;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2678,309,0 chrVI 249014 . A G 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=87;Dels=0.00;FS=3.002;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-2.421;QD=20.94;ReadPosRankSum=2.393;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1855,219,0 chrVI 249053 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=18.96;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1095,126,0 chrVI 249059 . A T 821 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=13.46;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:854,99,0 chrVI 249213 . A G 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=5.082;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.090;QD=22.72;ReadPosRankSum=1.702;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2668,318,0 chrVI 249459 . T C 3160 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.04;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3193,375,0 chrVI 249566 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=185;Dels=0.00;FS=3.154;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.226;QD=20.28;ReadPosRankSum=1.676;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3752,441,0 chrVI 249801 . T C 3159 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.47;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3192,378,0 chrVI 249889 . T G 2011 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.97;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2044,246,0 chrVI 249944 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.7153;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.98;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2111,240,0 chrVI 250075 . T G 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.701;DP=93;Dels=0.00;FS=6.127;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.500;QD=20.75;ReadPosRankSum=2.856;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:3,88:93:99:1963,228,0 chrVI 251006 . C G 3871.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.6749;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.12;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3871,456,0 chrVI 251165 . A G 4239.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.09;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4239,509,0 chrVI 251360 . A T 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.404;HaplotypeScore=11.1896;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.432;QD=19.50;ReadPosRankSum=1.712;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3393,402,0 chrVI 251438 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.82;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3862,438,0 chrVI 251816 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=165;Dels=0.00;FS=6.880;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.765;QD=19.55;ReadPosRankSum=2.301;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3258,381,0 chrVI 252169 . G C 1679 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.48;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1712,201,0 chrVI 252203 . A G 1959 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.84;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1992,237,0 chrVI 252269 . T A 1786 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=18.22;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1819,210,0 chrVI 252281 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=18.51;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1773,210,0 chrVI 252308 . C T 56.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;DP=88;Dels=0.00;FS=2.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.72;MQ0=0;MQRankSum=-1.999;QD=0.64;ReadPosRankSum=-5.198;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:75,13:88:10:86,0,10 chrVI 252316 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;QD=0.26;SB=-7.258e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:6:53,6,0 chrVI 252323 . C T 1476 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=16.04;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1509,174,0 chrVI 252493 . G T 2192 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.92;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2225,255,0 chrVI 252586 . C G 3072 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.63;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3105,366,0 chrVI 252729 . T C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=145;Dels=0.00;FS=3.027;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.084;QD=20.28;ReadPosRankSum=2.381;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2974,356,0 chrVI 253044 . C A 2748 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.21;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2781,327,0 chrVI 253284 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.93;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1377,162,0 chrVI 253399 . G A 442 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:475,54,0 chrVI 253673 . T G 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.631;QD=20.55;ReadPosRankSum=1.698;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2150,266,0 chrVI 253709 . T G 2501 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.33;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2534,314,0 chrVI 253927 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.2313;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.92;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4363,495,0 chrVI 254049 . C G 4506.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.0715;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.96;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4506,525,0 chrVI 254069 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.15;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4071,471,0 chrVI 254081 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.66;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4109,471,0 chrVI 254393 . T G 3864.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=193;Dels=0.00;FS=3.220;HaplotypeScore=5.9160;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=1.007;QD=20.02;ReadPosRankSum=1.714;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:3864,456,0 chrVI 254401 . T C 3692.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.234;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.300;QD=20.63;ReadPosRankSum=1.635;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3692,438,0 chrVI 254402 . T C 3594.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=3.338;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.687;QD=19.97;ReadPosRankSum=1.674;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3594,429,0 chrVI 254411 . A G 3345.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6947;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=1.554;QD=18.90;ReadPosRankSum=1.712;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3345,398,0 chrVI 254477 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.29;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3957,468,0 chrVI 254504 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=216;Dels=0.00;FS=7.496;HaplotypeScore=10.6454;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.022;QD=19.17;ReadPosRankSum=2.415;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4141,512,0 chrVI 254774 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=213;Dels=0.00;FS=3.827;HaplotypeScore=13.5487;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.650;QD=20.07;ReadPosRankSum=1.716;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:4274,515,0 chrVI 254882 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.31;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3635,432,0 chrVI 254963 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.61;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3422,387,0 chrVI 255149 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=19.22;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2378,270,0 chrVI 255164 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=17.08;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2065,243,0 chrVI 255180 . A C 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=-0.329;QD=17.14;ReadPosRankSum=1.702;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2021,240,0 chrVI 255193 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=14.60;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1478,174,0 chrVI 255214 . C T 984 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=12.95;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1017,120,0 chrVI 255242 . C T 857 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=15.04;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:890,102,0 chrVI 255300 . T A 1712 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.38;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1745,207,0 chrVI 255371 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=5.9322;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=16.20;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1232,144,0 chrVI 255417 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.01;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1953,231,0 chrVI 255483 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.23;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3295,378,0 chrVI 255612 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.76;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2383,270,0 chrVI 255641 . G A 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.521;QD=20.99;ReadPosRankSum=1.366;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2615,303,0 chrVI 255645 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.73;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2707,306,0 chrVI 255905 . A T 1115 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=15.07;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1148,129,0 chrVI 255999 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8596;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.69;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2454,297,0 chrVI 256052 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.04;FS=0.000;HaplotypeScore=20.3315;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=16.81;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2555,294,0 chrVI 256178 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.94;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2925,348,0 chrVI 256185 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.39;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2845,327,0 chrVI 256222 . A G 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.793;QD=18.78;ReadPosRankSum=1.667;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2042,240,0 chrVI 256299 . C G 2114 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=17.62;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2147,261,0 chrVI 256338 . A T 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.822;QD=16.33;ReadPosRankSum=1.703;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1960,225,0 chrVI 256447 . T A 377 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=22.18;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:48:410,48,0 chrVI 256449 . A G 350 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.87;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:45:383,45,0 chrVI 256744 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=4.236;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=1.108;QD=19.75;ReadPosRankSum=1.619;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1238,150,0 chrVI 256760 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.24;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1171,138,0 chrVI 256896 . C T 791 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=19.29;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:824,99,0 chrVI 256901 . T C 710 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=1.155;QD=16.90;ReadPosRankSum=1.485;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:90:743,90,0 chrVI 256903 . A T 824 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=18.73;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:857,99,0 chrVI 257019 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.51;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2757,318,0 chrVI 257077 . C A 1883 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=19.61;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1916,228,0 chrVI 257096 . T C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=-0.636;QD=15.99;ReadPosRankSum=1.697;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1616,195,0 chrVI 257112 . A T 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=6.059;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;MQRankSum=-1.518;QD=12.73;ReadPosRankSum=1.579;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1471,174,0 chrVI 257115 . G C 1371 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=12.46;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1404,174,0 chrVI 257160 . G C 2335 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=15.57;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2368,285,0 chrVI 257240 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=171;Dels=0.00;FS=3.029;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=-0.424;QD=19.73;ReadPosRankSum=2.406;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3373,410,0 chrVI 257253 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=18.78;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3305,384,0 chrVI 257275 . C G 2973 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.61;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3006,365,0 chrVI 257303 . A T 2905 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.4090;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=17.71;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2938,342,0 chrVI 257331 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.54;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3697,423,0 chrVI 257425 . C A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.95;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3917,453,0 chrVI 257512 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.64;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3419,405,0 chrVI 257645 . G T 3479.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.11;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3479,414,0 chrVI 257686 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.68;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3838,435,0 chrVI 257804 . A T 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-0.953;QD=20.08;ReadPosRankSum=2.136;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2081,252,0 chrVI 257833 . A G 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;MQRankSum=-1.211;QD=20.83;ReadPosRankSum=1.658;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1970,237,0 chrVI 257839 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=20.56;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1966,234,0 chrVI 257852 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=20.73;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1982,234,0 chrVI 257882 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.17;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2362,279,0 chrVI 257913 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9429;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.59;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2902,333,0 chrVI 257955 . C A 2890 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.31;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2923,333,0 chrVI 258075 . C T 719 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;QD=9.99;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:90:752,90,0 chrVI 258087 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=11.01;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:947,108,0 chrVI 258094 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;QD=10.94;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:963,120,0 chrVI 258116 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=14.37;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1642,198,0 chrVI 258145 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.76;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2306,281,0 chrVI 258210 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=22.76;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2832,324,0 chrVI 258414 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=3.680;HaplotypeScore=10.6438;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.137;QD=21.80;ReadPosRankSum=1.622;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2780,324,0 chrVI 258502 . G C 2847 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=19.37;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2880,336,0 chrVI 258520 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.78;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3087,360,0 chrVI 258551 . C A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=23.16;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3520,408,0 chrVI 258613 . A C 3409.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.43;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3409,402,0 chrVI 258651 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.31;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3503,422,0 chrVI 258878 . G A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.61;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3595,417,0 chrVI 258958 . C T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=21.96;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4590,528,0 chrVI 258983 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=21.38;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4340,498,0 chrVI 259027 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.57;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3333,381,0 chrVI 259181 . A C 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=218;Dels=0.00;FS=5.649;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.288;QD=19.83;ReadPosRankSum=2.949;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:3,213:218:99:4324,533,0 chrVI 259296 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.79;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3683,429,0 chrVI 259406 . C A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.63;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3280,375,0 chrVI 259494 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9687;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.62;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4330,489,0 chrVI 259711 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.58;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3583,420,0 chrVI 259817 . A G 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=3.253;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.631;QD=19.67;ReadPosRankSum=1.705;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2571,308,0 chrVI 259916 . T G 2036 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=18.18;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2069,252,0 chrVI 259919 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=18.64;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2046,243,0 chrVI 259953 . T A 1963 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=71.6012;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.85;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1996,234,0 chrVI 260044 . T G 2278 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=20.16;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2311,279,0 chrVI 260065 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.09;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2364,270,0 chrVI 260073 . G T 2137 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.79;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2170,252,0 chrVI 260286 . C A 2974 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.40;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3007,357,0 chrVI 260365 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=3.015;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.026;QD=21.73;ReadPosRankSum=2.346;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3140,377,0 chrVI 260396 . T C 2941 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.42;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2974,348,0 chrVI 260412 . A G 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.139;QD=21.03;ReadPosRankSum=1.707;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2914,345,0 chrVI 260723 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.87;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1752,198,0 chrVI 260779 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.94;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1436,171,0 chrVI 260788 . G C 1389 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.84;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1422,171,0 chrVI 260870 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.61;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1354,162,0 chrVI 260883 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.11;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1642,186,0 chrVI 261001 . A G 1823 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.20;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1856,219,0 chrVI 261111 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.933;QD=22.82;ReadPosRankSum=1.703;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2703,318,0 chrVI 261140 . A T 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.538;QD=23.22;ReadPosRankSum=1.704;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2936,336,0 chrVI 261434 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.2433;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.17;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2764,324,0 chrVI 261447 . A G 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.357;QD=21.50;ReadPosRankSum=2.359;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2935,348,0 chrVI 261491 . A G 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-1.761;QD=20.55;ReadPosRankSum=2.397;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1944,228,0 chrVI 261496 . A G 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=0.450;QD=21.82;ReadPosRankSum=2.877;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1997,234,0 chrVI 261556 . A T 1477 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.72;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1510,171,0 chrVI 261559 . T C 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=72;Dels=0.00;FS=13.421;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.043;QD=18.21;ReadPosRankSum=2.787;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:4,68:72:99:1344,162,0 chrVI 261703 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.11;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1426,162,0 chrVI 261710 . A T 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=72;Dels=0.00;FS=5.149;HaplotypeScore=3.5365;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.540;QD=19.21;ReadPosRankSum=1.588;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1416,159,0 chrVI 261777 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.70;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1641,192,0 chrVI 261991 . C T 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.117;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=1.023;QD=19.23;ReadPosRankSum=1.211;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:2,129:134:99:2610,268,0 chrVI 261997 . T C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.712;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=1.097;QD=18.05;ReadPosRankSum=0.830;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2199,223,0 chrVI 262058 . A T 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.052;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.491;QD=19.14;ReadPosRankSum=0.323;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2291,226,0 chrVI 262113 . C A 2101 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=17.81;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2134,243,0 chrVI 262163 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=15.63;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1893,219,0 chrVI 262281 . G A 1046 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=12.76;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1079,126,0 chrVI 262295 . T A 966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.648;QD=11.78;ReadPosRankSum=1.521;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:999,120,0 chrVI 262470 . T G 2797 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.38;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2830,333,0 chrVI 262541 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.67;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2417,279,0 chrVI 262662 . G T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.2332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3549,420,0 chrVI 262727 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.2706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.489;QD=21.75;ReadPosRankSum=1.676;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4002,474,0 chrVI 262806 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.18;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3050,348,0 chrVI 262930 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.5296;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4000,462,0 chrVI 263216 . C T 2258 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.36;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2291,267,0 chrVI 263436 . A G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=4.620;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.690;QD=20.87;ReadPosRankSum=1.701;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2391,288,0 chrVI 263468 . A C 2714 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.04;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2747,330,0 chrVI 263545 . T C 1979 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.03;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2012,240,0 chrVI 263566 . C G 1815 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.33;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1848,222,0 chrVI 263716 . T A 1719 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.71;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1752,204,0 chrVI 263789 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.97;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1471,168,0 chrVI 263791 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=19.00;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1420,171,0 chrVI 263801 . G C 1342 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.89;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1375,165,0 chrVI 263881 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.28;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1927,222,0 chrVI 263936 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.42;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1912,228,0 chrVI 263960 . A G 1903 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.68;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1936,228,0 chrVI 264022 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.59;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1894,228,0 chrVI 264138 . A G 3069 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.08;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3102,363,0 chrVI 264197 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.61;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2308,273,0 chrVI 264282 . A T 3157 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.9140;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.77;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3190,363,0 chrVI 264395 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=2.887;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.721;QD=20.33;ReadPosRankSum=2.418;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3205,383,0 chrVI 264419 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.50;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3030,348,0 chrVI 264434 . T C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=2.824;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.234;QD=16.16;ReadPosRankSum=2.385;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2490,297,0 chrVI 264629 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.866;QD=21.37;ReadPosRankSum=1.711;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,163:168:99:3590,423,0 chrVI 264656 . T A 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=3.095;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.687;QD=21.23;ReadPosRankSum=1.687;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3290,381,0 chrVI 264812 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.291;HaplotypeScore=9.4177;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.537;QD=19.79;ReadPosRankSum=1.689;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3200,386,0 chrVI 264845 . A T 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=3.214;HaplotypeScore=11.4168;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.053;QD=21.04;ReadPosRankSum=1.687;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3252,378,0 chrVI 265286 . A G 778 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=10.10;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:96:811,96,0 chrVI 265430 . T C 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=15.5250;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-1.395;QD=17.73;ReadPosRankSum=1.395;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1363,162,0 chrVI 265634 . T C 2310 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.62;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2343,276,0 chrVI 265792 . T A 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=2.837;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.163;QD=20.93;ReadPosRankSum=2.400;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2084,234,0 chrVI 265986 . T C 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=134;Dels=0.00;FS=2.995;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.211;QD=22.23;ReadPosRankSum=2.413;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3012,360,0 chrVI 266145 . T C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=3.600;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.100;QD=20.06;ReadPosRankSum=1.705;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2561,311,0 chrVI 266266 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2993;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.57;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1720,207,0 chrVI 266282 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.89;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1464,177,0 chrVI 266285 . C G 1510 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.61;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1543,186,0 chrVI 266324 . T G 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=3.510;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.226;QD=19.02;ReadPosRankSum=1.657;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1783,210,0 chrVI 266412 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2399,270,0 chrVI 266583 . T C 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.247;QD=20.44;ReadPosRankSum=1.650;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2609,309,0 chrVI 266706 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.17;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2937,333,0 chrVI 266754 . C T 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.150;HaplotypeScore=7.5843;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.357;QD=21.61;ReadPosRankSum=1.567;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2778,321,0 chrVI 266850 . C A 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.841;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.115;QD=20.83;ReadPosRankSum=1.072;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2241,236,0 chrVI 266896 . G T 1779 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.96;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1812,207,0 chrVI 266918 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.84;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2108,243,0 chrVI 266983 . T C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.693;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.409;QD=20.88;ReadPosRankSum=1.701;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2351,279,0 chrVI 267016 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.05;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2118,252,0 chrVI 267324 . C T 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.086;DP=118;Dels=0.00;FS=4.384;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.057;QD=20.74;ReadPosRankSum=-1.204;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2480,263,0 chrVI 267531 . A T 2887 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=11.4658;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=22.21;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2920,336,0 chrVI 267597 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=134;Dels=0.00;FS=10.372;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=1.263;QD=19.56;ReadPosRankSum=2.888;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2654,323,0 chrVI 267633 . G T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.57;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3263,375,0 chrVI 267673 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5351;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.75;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3567,408,0 chrVI 267742 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=18.64;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2754,315,0 chrVI 267778 . G C 2225 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=13.24;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2258,270,0 chrVI 267785 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=12.99;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2151,246,0 chrVI 267793 . C T 1662 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=11.38;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1695,198,0 chrVI 267797 . A G 1469 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=7.651;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;MQRankSum=1.518;QD=11.13;ReadPosRankSum=2.412;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:1502,177,0 chrVI 267799 . G A 1495 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=11.33;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1528,177,0 chrVI 267802 . A G 1570 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=11.29;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1603,189,0 chrVI 267905 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.760;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.374;QD=19.95;ReadPosRankSum=1.708;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2945,353,0 chrVI 267925 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.158;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.635;QD=20.62;ReadPosRankSum=1.646;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2508,291,0 chrVI 267994 . C A 2115 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=18.72;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2148,246,0 chrVI 268167 . C G 713 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.81;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:87:746,87,0 chrVI 268473 . A G 2389 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.33;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2422,285,0 chrVI 268487 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.63;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2467,279,0 chrVI 268516 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.65;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1995,237,0 chrVI 268673 . G A 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DP=88;Dels=0.00;FS=3.763;HaplotypeScore=59.0234;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.433;QD=14.76;ReadPosRankSum=1.535;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1332,162,0 chrVI 268829 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=107;Dels=0.00;FS=9.285;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.491;QD=21.80;ReadPosRankSum=2.933;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:3,102:107:99:2366,285,0 chrVI 268956 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=22.08;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3212,375,0 chrVI 268977 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=20.57;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2933,336,0 chrVI 268997 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=19.49;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2255,267,0 chrVI 269020 . T G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.416;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=0.062;QD=18.65;ReadPosRankSum=1.670;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2122,258,0 chrVI 269041 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.52;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1774,210,0 chrVI 269092 . A T 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.607;QD=21.03;ReadPosRankSum=1.673;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2494,285,0 chrVI 269180 . T C 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=98;Dels=0.00;FS=9.454;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;MQRankSum=-0.876;QD=15.79;ReadPosRankSum=2.399;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1580,197,0 chrVI 269183 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=15.95;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1596,195,0 chrVI 269219 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=16.66;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1549,180,0 chrVI 269220 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=16.83;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1548,180,0 chrVI 269250 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=17.07;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1672,192,0 chrVI 269298 . C G 1769 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=18.43;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1802,213,0 chrVI 269434 . A G 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.491;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-1.303;QD=19.84;ReadPosRankSum=1.699;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2136,255,0 chrVI 269436 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=18.91;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2056,254,0 chrVI 269514 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.57;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1586,192,0 chrVI 269612 . A T 1159 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.11;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1192,144,0 chrVI 269633 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=19.89;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1445,168,0 chrVI 269681 . A G 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=0.834;QD=17.04;ReadPosRankSum=1.668;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:953,117,0 chrVI 269692 . G A 852 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=19.36;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:885,105,0 chrVI 269707 . T C 627 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=17.42;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:78:660,78,0 chrVI 269754 . T A 631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=-0.173;QD=17.53;ReadPosRankSum=2.314;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:2,34:36:75:664,75,0 chrVI 269781 . G T 1319 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.27;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1352,153,0 chrVI 269822 . C G 1374 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=59.9235;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.08;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1407,174,0 chrVI 269825 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=59.9235;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.06;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1486,168,0 chrVI 269876 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=19.82;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1341,162,0 chrVI 269880 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;QD=18.65;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1301,153,0 chrVI 269945 . G C 2125 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.58;MQ0=0;QD=23.61;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2158,255,0 chrVI 269990 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=22.33;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1886,213,0 chrVI 270034 . C A 1655 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=22.36;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1688,189,0 chrVI 270091 . C T 1849 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=23.41;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1882,219,0 chrVI 270107 . T A 1590 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=24.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1623,186,0 chrVII 277 . T C 208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203;DP=16;Dels=0.00;FS=8.129;HaplotypeScore=2.8051;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=3;MQRankSum=1.470;QD=13.00;ReadPosRankSum=1.470;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,15:16:30:241,30,0 chrVII 278 . G A 185.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.099;DP=17;Dels=0.00;FS=5.304;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=4;MQRankSum=1.875;QD=10.88;ReadPosRankSum=0.691;SB=-2.383e+01 GT:AD:DP:GQ:PL 1/1:3,14:17:27:218,27,0 chrVII 295 . T A 131.06 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=18.73;MQ0=4;QD=5.96;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:21:164,21,0 chrVII 309 . T C 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.763;DP=24;Dels=0.00;FS=18.512;HaplotypeScore=7.9426;MLEAC=1;MLEAF=0.500;MQ=18.31;MQ0=4;MQRankSum=0.454;QD=2.00;ReadPosRankSum=3.258;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,10:24:78:78,0,107 chrVII 318 . A G 126.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;DP=24;Dels=0.00;FS=3.222;HaplotypeScore=9.9293;MLEAC=1;MLEAF=0.500;MQ=18.56;MQ0=3;MQRankSum=-1.617;QD=5.25;ReadPosRankSum=1.617;SB=-2.500e+01 GT:AD:DP:GQ:PL 0/1:2,22:24:25:156,0,25 chrVII 455 . C T 240.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.711;DP=76;Dels=0.00;FS=6.198;HaplotypeScore=1.9628;MLEAC=1;MLEAF=0.500;MQ=19.32;MQ0=1;MQRankSum=-0.167;QD=3.16;ReadPosRankSum=-0.403;SB=-2.818e-02 GT:AD:DP:GQ:PL 0/1:19,57:76:20:270,0,20 chrVII 459 . C T 369 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=1;QD=4.29;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,85:86:51:402,51,0 chrVII 461 . C T 436 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=77.7444;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=1;QD=5.07;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:60:469,60,0 chrVII 466 . A C 437 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=206.0086;MLEAC=2;MLEAF=1.00;MQ=19.40;MQ0=1;QD=4.60;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:60:470,60,0 chrVII 487 . C T 288.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.592;DP=116;Dels=0.00;FS=10.980;HaplotypeScore=32.0414;MLEAC=1;MLEAF=0.500;MQ=19.46;MQ0=4;MQRankSum=1.665;QD=2.48;ReadPosRankSum=0.879;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,80:116:88:318,0,88 chrVII 489 . A T 329.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.562;DP=117;Dels=0.01;FS=4.283;HaplotypeScore=39.8285;MLEAC=1;MLEAF=0.500;MQ=19.38;MQ0=5;MQRankSum=0.251;QD=2.81;ReadPosRankSum=2.092;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:26,90:116:61:359,0,61 chrVII 490 . A C 296.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.937;DP=117;Dels=0.01;FS=6.511;HaplotypeScore=40.8019;MLEAC=1;MLEAF=0.500;MQ=19.38;MQ0=5;MQRankSum=0.653;QD=2.53;ReadPosRankSum=1.936;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:26,80:116:64:326,0,64 chrVII 508 . C T 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.278;DP=132;Dels=0.00;FS=57.832;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=18.66;MQ0=10;MQRankSum=-3.280;QD=0.45;ReadPosRankSum=-1.093;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:83,49:132:89:89,0,313 chrVII 517 . T C 287.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.957;DP=128;Dels=0.00;FS=59.005;HaplotypeScore=16.1098;MLEAC=1;MLEAF=0.500;MQ=18.83;MQ0=10;MQRankSum=2.439;QD=2.24;ReadPosRankSum=0.539;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,80:128:88:317,0,88 chrVII 520 . T G 314.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;DP=123;Dels=0.00;FS=57.087;HaplotypeScore=16.8753;MLEAC=1;MLEAF=0.500;MQ=18.78;MQ0=10;MQRankSum=2.870;QD=2.55;ReadPosRankSum=0.462;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:38,85:123:83:344,0,83 chrVII 521 . C A 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;DP=123;Dels=0.00;FS=57.087;HaplotypeScore=16.8753;MLEAC=1;MLEAF=0.500;MQ=18.78;MQ0=10;MQRankSum=-2.145;QD=0.44;ReadPosRankSum=0.010;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:85,38:123:84:84,0,346 chrVII 529 . T C 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.2281;MLEAC=1;MLEAF=0.500;MQ=18.70;MQ0=11;MQRankSum=-0.416;QD=0.22;ReadPosRankSum=1.340;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:91,17:108:54:54,0,284 chrVII 641 . G A 973 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=6;QD=15.69;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1006,137,0 chrVII 665 . C T 1922 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.801;DP=139;Dels=0.00;FS=11.920;HaplotypeScore=9.6715;MLEAC=2;MLEAF=1.00;MQ=18.96;MQ0=14;MQRankSum=0.651;QD=13.83;ReadPosRankSum=0.893;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:20,119:139:99:1955,222,0 chrVII 673 . T A 1870 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.816;DP=137;Dels=0.00;FS=24.732;HaplotypeScore=7.1883;MLEAC=2;MLEAF=1.00;MQ=19.08;MQ0=14;MQRankSum=0.076;QD=13.65;ReadPosRankSum=3.059;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:9,128:137:99:1903,170,0 chrVII 678 . C T 1845 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.229;DP=138;Dels=0.00;FS=16.466;HaplotypeScore=2.8627;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=13;MQRankSum=0.161;QD=13.37;ReadPosRankSum=2.436;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:23,115:138:99:1878,136,0 chrVII 680 . T C 1849 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.301;DP=138;Dels=0.00;FS=16.466;HaplotypeScore=2.8627;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=13;MQRankSum=0.501;QD=13.40;ReadPosRankSum=2.601;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:23,115:138:99:1882,148,0 chrVII 723 . T C 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.807;DP=105;Dels=0.00;FS=4.329;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=20.07;MQ0=10;MQRankSum=-0.489;QD=1.86;ReadPosRankSum=1.565;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:80,24:105:99:225,0,797 chrVII 749 . T C 98.13 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=3;QD=9.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,8:10:18:131,18,0 chrVII 752 . C T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.73;MQ0=2;MQRankSum=1.537;QD=4.63;ReadPosRankSum=-1.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:3,5:8:47:67,0,47 chrVII 763 . T C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.61;MQ0=1;MQRankSum=-1.231;QD=3.34;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:3,3:6:36:50,0,36 chrVII 805 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=1;QD=4.16;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:52,6,0 chrVII 837 . T A 207 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.411;DP=29;Dels=0.00;FS=29.607;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.16;MQ0=0;MQRankSum=1.297;QD=7.14;ReadPosRankSum=3.131;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:4,25:29:30:240,30,0 chrVII 842 . T G 249 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.971;DP=31;Dels=0.00;FS=36.527;HaplotypeScore=18.2685;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=0;MQRankSum=0.434;QD=8.03;ReadPosRankSum=2.372;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:3,28:31:36:282,36,0 chrVII 923 . G A 152.06 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=2.62;SB=-1.021e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:21:185,21,0 chrVII 930 . A C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;DP=49;Dels=0.00;FS=41.500;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.58;MQ0=0;MQRankSum=1.388;QD=0.39;ReadPosRankSum=0.503;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:6,43:49:49:49,0,125 chrVII 932 . G C 255 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=4.90;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:36:288,36,0 chrVII 934 . T C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;DP=54;Dels=0.00;FS=67.997;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.09;MQ0=0;MQRankSum=1.546;QD=0.21;ReadPosRankSum=2.040;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:11,43:54:41:41,0,206 chrVII 942 . G A 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.299;DP=59;Dels=0.00;FS=98.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.10;MQ0=0;MQRankSum=3.180;QD=0.56;ReadPosRankSum=1.714;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,43:59:63:63,0,222 chrVII 971 . T C 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;DP=82;Dels=0.00;FS=172.237;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=3;MQRankSum=4.012;QD=0.41;ReadPosRankSum=-2.749;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:38,44:82:64:64,0,496 chrVII 978 . A G 703 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=3;QD=9.13;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:93:736,93,0 chrVII 984 . C A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;DP=75;Dels=0.00;FS=165.706;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=3;MQRankSum=2.284;QD=0.64;ReadPosRankSum=-3.705;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:37,38:75:78:78,0,490 chrVII 988 . G T 656 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=3;QD=8.86;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:87:689,87,0 chrVII 1005 . C T 317.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.906;DP=88;Dels=0.00;FS=130.354;HaplotypeScore=4.9328;MLEAC=1;MLEAF=0.500;MQ=30.04;MQ0=3;MQRankSum=-3.950;QD=3.60;ReadPosRankSum=2.819;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,33:88:99:347,0,414 chrVII 1019 . A T 230.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.753;DP=101;Dels=0.00;FS=83.514;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=31.25;MQ0=3;MQRankSum=-3.598;QD=2.28;ReadPosRankSum=-0.381;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,31:101:99:260,0,850 chrVII 1025 . A G 783.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;DP=103;Dels=0.00;FS=79.538;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.54;MQ0=3;MQRankSum=3.321;QD=7.60;ReadPosRankSum=3.780;SB=-4.550e+02 GT:AD:DP:GQ:PL 0/1:31,71:103:99:813,0,172 chrVII 1046 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.76;MQ0=3;QD=14.26;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1402,168,0 chrVII 1070 . A T 1750 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=15.62;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1783,210,0 chrVII 1080 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=17.53;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2014,225,0 chrVII 1136 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=9.7649;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=18.41;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1782,198,0 chrVII 1195 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=0.25;SB=-8.638e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:6:50,6,0 chrVII 1354 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=6.606;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.478;QD=23.29;ReadPosRankSum=2.334;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2013,231,0 chrVII 1411 . A T 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=85;Dels=0.00;FS=13.419;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.798;QD=17.47;ReadPosRankSum=2.775;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1518,174,0 chrVII 1422 . G C 1621 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=16.71;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1654,189,0 chrVII 1535 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=23.15;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2232,258,0 chrVII 1562 . G C 2228 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=22.73;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2261,258,0 chrVII 1761 . G T 1771 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=22.42;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1804,198,0 chrVII 1769 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=21.12;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1638,183,0 chrVII 1782 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=22.71;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1509,168,0 chrVII 1787 . A G 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=0.255;QD=19.46;ReadPosRankSum=1.681;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1356,156,0 chrVII 1808 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.12;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1554,180,0 chrVII 1884 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.55;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2671,291,0 chrVII 1959 . C T 1259 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=10.0434;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.98;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1292,147,0 chrVII 2026 . A G 150.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=61;Dels=0.00;FS=2.776;HaplotypeScore=48.2219;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-2.244;QD=2.46;ReadPosRankSum=2.368;SB=-5.801e+02 GT:AD:DP:GQ:PL 1/1:2,58:61:21:183,21,0 chrVII 2086 . G A 987 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.32;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1020,111,0 chrVII 2098 . A G 824 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=14.21;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:99:857,99,0 chrVII 2184 . C G 475 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=16.38;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,26:29:57:508,57,0 chrVII 2188 . G A 457 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.28;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:54:490,54,0 chrVII 2283 . C A 44.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=8.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:77,9,0 chrVII 2300 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrVII 2534 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrVII 2572 . A T 178.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.72;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:211,24,0 chrVII 2892 . A G 2899 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.13;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2932,336,0 chrVII 3115 . C A 2856 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.60;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2889,315,0 chrVII 3292 . C G 2050 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2083,237,0 chrVII 3598 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2793;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.736;QD=21.54;ReadPosRankSum=1.664;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3295,387,0 chrVII 3780 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.32;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2734,312,0 chrVII 3891 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4488;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.47;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2530,276,0 chrVII 3927 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=22.29;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2752,309,0 chrVII 4017 . T C 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.133;QD=23.81;ReadPosRankSum=1.688;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1938,219,0 chrVII 4099 . A C 1386 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;QD=23.10;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1419,156,0 chrVII 4118 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=19.57;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1168,132,0 chrVII 4121 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=21.57;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1198,129,0 chrVII 4130 . T C 890 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=18.16;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:923,105,0 chrVII 4133 . C T 843 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=17.20;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:93:876,93,0 chrVII 4142 . T A 719 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:84:752,84,0 chrVII 4349 . T A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.21;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:48,6,0 chrVII 4352 . T G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=-0.731;QD=2.98;ReadPosRankSum=0.731;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,4:5:6:46,6,0 chrVII 4356 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.18;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:47,6,0 chrVII 4360 . C T 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.14;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:75,9,0 chrVII 4363 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=0.747;QD=5.37;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:9:75,9,0 chrVII 4365 . C T 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=5.37;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:75,9,0 chrVII 4396 . A T 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=5.22;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:132,15,0 chrVII 4397 . T C 95.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;MQRankSum=-0.173;QD=4.76;ReadPosRankSum=1.561;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:1,19:20:15:128,15,0 chrVII 4399 . G A 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=4.66;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:126,15,0 chrVII 4416 . C T 150.06 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=5.56;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:21:183,21,0 chrVII 4442 . G T 351 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=35.7608;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=8.36;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:42:384,42,0 chrVII 4458 . A G 443 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=81.1867;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=9.04;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:54:476,54,0 chrVII 4504 . T C 575 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.21;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:69:608,69,0 chrVII 4516 . C T 540 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=56.0575;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.83;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:63:573,63,0 chrVII 4535 . C T 354 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=47.3589;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.00;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:42:387,42,0 chrVII 4578 . T C 568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;MQRankSum=1.501;QD=12.62;ReadPosRankSum=1.655;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:69:601,69,0 chrVII 4590 . A G 796 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=17.30;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:829,96,0 chrVII 4591 . G A 835 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=17.77;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:868,96,0 chrVII 4682 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=0;MQRankSum=0.792;QD=23.19;ReadPosRankSum=1.625;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3024,342,0 chrVII 4809 . G C 1522 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=23.78;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1555,186,0 chrVII 4815 . T G 1680 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=22.70;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1713,201,0 chrVII 4834 . A G 1686 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=22.48;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1719,195,0 chrVII 4844 . T G 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=49.1631;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=0.974;QD=19.81;ReadPosRankSum=-0.325;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1301,153,0 chrVII 4851 . C T 1011 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=18.72;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1044,120,0 chrVII 4859 . C T 1007 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=17.98;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1040,114,0 chrVII 4894 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=17.46;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1273,147,0 chrVII 4901 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;QD=17.66;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1216,138,0 chrVII 4911 . C A 1071 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=17.85;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1104,123,0 chrVII 4919 . T C 973 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=16.22;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1006,120,0 chrVII 4951 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=45.5486;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=18.56;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1128,135,0 chrVII 4970 . A G 846 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=18.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:879,102,0 chrVII 4971 . C T 871 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=18.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:904,99,0 chrVII 4980 . T C 715 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=15.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:90:748,90,0 chrVII 4981 . A G 736 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=16.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:90:769,90,0 chrVII 4985 . A G 725 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=15.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:90:758,90,0 chrVII 4993 . A G 682 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;MQRankSum=-1.733;QD=15.86;ReadPosRankSum=1.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,42:43:84:715,84,0 chrVII 4998 . A G 627 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;MQRankSum=-0.634;QD=15.29;ReadPosRankSum=1.648;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,40:41:78:660,78,0 chrVII 5007 . A G 475 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=0;MQRankSum=-0.040;QD=15.32;ReadPosRankSum=2.292;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:2,29:31:60:508,60,0 chrVII 5008 . T A 477 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=16.45;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:60:510,60,0 chrVII 5028 . A C 247 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=13.00;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:280,33,0 chrVII 5030 . A T 260 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;MQRankSum=1.187;QD=13.68;ReadPosRankSum=1.552;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:33:293,33,0 chrVII 5032 . G A 252 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=14.00;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:285,33,0 chrVII 5092 . C A 165.03 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=5.89;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:198,24,0 chrVII 5108 . A G 269 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=8.15;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:36:302,36,0 chrVII 5128 . C T 455 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=11.67;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:57:488,57,0 chrVII 5130 . C A 458 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=11.74;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:57:491,57,0 chrVII 5138 . C A 436 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=9.91;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:54:469,54,0 chrVII 5150 . C T 394 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=8.57;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:48:427,48,0 chrVII 5165 . A G 368 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=7.51;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:48:401,48,0 chrVII 5182 . C T 402 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=7.88;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:51:435,51,0 chrVII 5189 . A C 356 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=7.27;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:45:389,45,0 chrVII 5204 . C T 366 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=6.54;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:399,45,0 chrVII 5209 . A C 345 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=0;QD=6.39;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:45:378,45,0 chrVII 5213 . G T 224 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=5.21;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:257,30,0 chrVII 5214 . G A 215 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=5.00;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:248,30,0 chrVII 5215 . C T 225 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=5.23;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:258,30,0 chrVII 5217 . A G 192.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;MQRankSum=1.088;QD=4.47;ReadPosRankSum=0.685;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,42:43:27:225,27,0 chrVII 5223 . T C 213 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=0;QD=4.53;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,47:47:30:246,30,0 chrVII 5272 . G T 477 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.45;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:510,60,0 chrVII 5280 . A G 510 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.45;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:543,63,0 chrVII 5291 . G T 650 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.97;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:683,75,0 chrVII 5304 . C T 737 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=23.77;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:770,84,0 chrVII 5357 . C G 1523 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=19.78;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1556,186,0 chrVII 5372 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=20.91;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2124,243,0 chrVII 5414 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1223;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=0.711;QD=18.82;ReadPosRankSum=1.659;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1821,222,0 chrVII 5418 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=19.55;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1753,201,0 chrVII 5475 . A C 144.06 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=10.29;SB=-9.394e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:21:177,21,0 chrVII 5476 . T C 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=8.86;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,11:13:18:148,18,0 chrVII 5480 . G A 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=13.16;SB=-4.314e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:138,15,0 chrVII 5482 . G A 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=15.04;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:138,15,0 chrVII 5484 . T C 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=14.32;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:133,15,0 chrVII 5486 . A G 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=14.18;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:132,15,0 chrVII 5490 . A C 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=11.38;SB=-2.213e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:158,18,0 chrVII 5508 . G A 279 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=14.68;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:312,36,0 chrVII 5515 . G A 248 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=13.05;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:281,33,0 chrVII 5516 . G T 229 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=12.05;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:262,33,0 chrVII 5522 . C G 243 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=9.35;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:33:276,33,0 chrVII 5525 . T G 277 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=0;QD=10.26;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:36:310,36,0 chrVII 5528 . A C 298 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=10.64;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:39:331,39,0 chrVII 5533 . C T 302 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=11.19;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:335,39,0 chrVII 5535 . G A 298 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=11.04;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:331,39,0 chrVII 5568 . A G 501 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=0;QD=13.54;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:66:534,66,0 chrVII 5575 . G A 662 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=15.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:84:695,84,0 chrVII 5598 . G A 622 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=15.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:78:655,78,0 chrVII 5599 . A G 608 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=15.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:78:641,78,0 chrVII 5604 . A T 616 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=15.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:78:649,78,0 chrVII 5629 . T G 488 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=16.83;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:521,63,0 chrVII 6281 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=1;QD=2.82;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:1,16:17:9:80,9,0 chrVII 6287 . T A 130.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=2;MQRankSum=-0.630;QD=5.42;ReadPosRankSum=1.576;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:3,21:24:18:163,18,0 chrVII 6329 . A G 1103 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=3;QD=18.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,58:61:99:1136,135,0 chrVII 6389 . C G 2163 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=17;QD=16.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,122:134:99:2196,252,0 chrVII 6461 . A G 489 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=22;QD=4.70;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,104:104:63:522,63,0 chrVII 6476 . C A 608 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=105;Dels=0.00;FS=7.238;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=15;MQRankSum=1.578;QD=5.79;ReadPosRankSum=-0.693;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:15,90:105:72:641,72,0 chrVII 6485 . G A 368.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.775;DP=111;Dels=0.00;FS=202.386;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=11;MQRankSum=3.130;QD=3.32;ReadPosRankSum=-5.804;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:79,32:111:99:398,0,336 chrVII 6509 . A G 347.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DP=117;Dels=0.00;FS=324.923;HaplotypeScore=5.3071;MLEAC=1;MLEAF=0.500;MQ=29.57;MQ0=1;MQRankSum=-4.878;QD=2.97;ReadPosRankSum=-0.420;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:47,70:117:99:377,0,751 chrVII 6542 . A G 123.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.902;DP=147;Dels=0.00;FS=421.767;HaplotypeScore=2.5528;MLEAC=1;MLEAF=0.500;MQ=31.43;MQ0=1;MQRankSum=-8.187;QD=0.84;ReadPosRankSum=-0.723;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:84,63:147:99:153,0,1554 chrVII 6545 . T C 94.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;DP=148;Dels=0.00;FS=398.776;HaplotypeScore=2.5450;MLEAC=1;MLEAF=0.500;MQ=31.70;MQ0=1;MQRankSum=-8.329;QD=0.64;ReadPosRankSum=0.747;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:90,58:148:99:124,0,1556 chrVII 6547 . A G 85.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.791;DP=155;Dels=0.00;FS=413.515;HaplotypeScore=3.5366;MLEAC=1;MLEAF=0.500;MQ=31.96;MQ0=1;MQRankSum=-8.716;QD=0.55;ReadPosRankSum=1.273;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:97,58:155:99:115,0,1782 chrVII 6557 . A G 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.013;DP=171;Dels=0.00;FS=471.874;HaplotypeScore=9.0552;MLEAC=1;MLEAF=0.500;MQ=32.60;MQ0=0;MQRankSum=-9.337;QD=0.42;ReadPosRankSum=1.017;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:110,61:171:99:101,0,2093 chrVII 6575 . C T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=196;Dels=0.00;FS=528.987;HaplotypeScore=8.0928;MLEAC=1;MLEAF=0.500;MQ=30.33;MQ0=2;MQRankSum=-6.839;QD=0.08;ReadPosRankSum=-1.160;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:126,69:196:45:45,0,2070 chrVII 6629 . G A 1059.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.932;DP=239;Dels=0.00;FS=257.076;HaplotypeScore=72.4676;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=29;MQRankSum=-3.492;QD=4.43;ReadPosRankSum=1.325;SB=-6.590e+02 GT:AD:DP:GQ:PL 0/1:78,161:239:99:1089,0,780 chrVII 6697 . A G 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-6.538;DP=220;Dels=0.00;FS=102.189;HaplotypeScore=31.6598;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=2;MQRankSum=8.460;QD=16.05;ReadPosRankSum=2.481;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:48,169:220:99:3532,405,0 chrVII 6712 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=205;Dels=0.00;FS=5.081;HaplotypeScore=19.0748;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=2;MQRankSum=1.569;QD=18.17;ReadPosRankSum=3.400;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:4,201:205:99:3724,426,0 chrVII 6763 . T C 2487 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4960;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=19;MQRankSum=1.515;QD=13.59;ReadPosRankSum=2.389;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:2520,288,0 chrVII 6799 . T C 623.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.260;DP=254;Dels=0.00;FS=69.325;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=64;MQRankSum=0.613;QD=2.45;ReadPosRankSum=-2.634;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,116:254:99:653,0,1366 chrVII 6829 . A G 343.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;DP=331;Dels=0.00;FS=7.203;HaplotypeScore=20.0046;MLEAC=1;MLEAF=0.500;MQ=19.39;MQ0=64;MQRankSum=0.543;QD=1.04;ReadPosRankSum=2.398;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:252,77:331:99:373,0,1548 chrVII 6868 . G T 385.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.139;DP=261;Dels=0.00;FS=0.574;HaplotypeScore=125.6478;MLEAC=1;MLEAF=0.500;MQ=21.34;MQ0=33;MQRankSum=-3.047;QD=1.48;ReadPosRankSum=-1.623;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:167,94:261:99:415,0,1534 chrVII 6869 . C A 935.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.853;DP=260;Dels=0.00;FS=121.637;HaplotypeScore=107.0466;MLEAC=1;MLEAF=0.500;MQ=21.38;MQ0=32;MQRankSum=7.823;QD=3.60;ReadPosRankSum=0.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,78:260:99:965,0,1023 chrVII 6870 . T C 985.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;DP=258;Dels=0.00;FS=57.856;HaplotypeScore=109.3579;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=31;MQRankSum=4.285;QD=3.82;ReadPosRankSum=2.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,100:257:99:1015,0,899 chrVII 6921 . T C 1479 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.823;DP=105;Dels=0.00;FS=33.544;HaplotypeScore=13.4498;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=2;MQRankSum=3.274;QD=14.09;ReadPosRankSum=3.781;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:6,99:105:99:1512,171,0 chrVII 6925 . A T 1489 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.5606;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=2;MQRankSum=-1.205;QD=15.84;ReadPosRankSum=1.694;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1522,162,0 chrVII 6928 . A C 1419 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=2;MQRankSum=1.365;QD=15.26;ReadPosRankSum=3.359;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:5,88:93:99:1452,159,0 chrVII 6932 . C G 963 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.662;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=2;MQRankSum=1.681;QD=13.76;ReadPosRankSum=1.681;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:2,67:70:99:996,117,0 chrVII 6933 . A G 952 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.764;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=2;MQRankSum=1.681;QD=13.41;ReadPosRankSum=1.681;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:3,67:71:99:985,117,0 chrVII 6935 . T C 886 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.770;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=5;MQRankSum=2.379;QD=11.97;ReadPosRankSum=2.379;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:7,67:74:99:919,114,0 chrVII 6936 . C T 886 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=6;MQRankSum=2.379;QD=11.81;ReadPosRankSum=2.379;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:6,68:74:99:919,114,0 chrVII 6937 . A T 982 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.949;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=8;MQRankSum=2.379;QD=12.75;ReadPosRankSum=2.379;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:9,67:76:99:1015,117,0 chrVII 6941 . G C 1173 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.514;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=8;MQRankSum=2.401;QD=10.86;ReadPosRankSum=0.702;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:9,98:107:99:1206,135,0 chrVII 6963 . G A 907 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.868;DP=142;Dels=0.00;FS=9.622;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=32;MQRankSum=4.080;QD=6.39;ReadPosRankSum=2.881;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:44,98:142:86:940,86,0 chrVII 6964 . G C 900 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;DP=143;Dels=0.00;FS=9.314;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=32;MQRankSum=4.315;QD=6.29;ReadPosRankSum=3.022;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:45,98:143:86:933,86,0 chrVII 6966 . A G 866 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.008;DP=148;Dels=0.00;FS=8.302;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.48;MQ0=33;MQRankSum=5.102;QD=5.85;ReadPosRankSum=3.826;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:50,98:148:86:899,86,0 chrVII 6974 . T A 803 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.111;DP=167;Dels=0.00;FS=14.759;HaplotypeScore=99.1309;MLEAC=2;MLEAF=1.00;MQ=19.99;MQ0=38;MQRankSum=4.996;QD=4.81;ReadPosRankSum=3.090;SB=-6.541e-03 GT:AD:DP:GQ:PL 1/1:62,105:167:56:836,56,0 chrVII 6985 . G A 426.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.266;DP=169;Dels=0.00;FS=16.011;HaplotypeScore=5.6735;MLEAC=1;MLEAF=0.500;MQ=18.28;MQ0=45;MQRankSum=4.456;QD=2.52;ReadPosRankSum=3.828;SB=-4.733e-01 GT:AD:DP:GQ:PL 0/1:81,88:169:50:456,0,50 chrVII 6986 . A G 403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.660;DP=171;Dels=0.00;FS=15.517;HaplotypeScore=5.6735;MLEAC=1;MLEAF=0.500;MQ=18.34;MQ0=45;MQRankSum=4.797;QD=2.36;ReadPosRankSum=3.652;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:83,88:171:79:433,0,79 chrVII 7017 . T C 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=84.1434;MLEAC=1;MLEAF=0.500;MQ=15.82;MQ0=50;MQRankSum=0.390;QD=0.81;ReadPosRankSum=-1.457;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:135,33:168:99:166,0,132 chrVII 7020 . C A 198.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.086;DP=163;Dels=0.00;FS=27.882;HaplotypeScore=96.2945;MLEAC=1;MLEAF=0.500;MQ=15.48;MQ0=50;MQRankSum=-0.183;QD=1.21;ReadPosRankSum=0.283;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:108,55:163:83:228,0,83 chrVII 7021 . A G 264.79 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;DP=162;Dels=0.00;FS=7.039;HaplotypeScore=96.2945;MLEAC=1;MLEAF=0.500;MQ=15.48;MQ0=50;MQRankSum=3.311;QD=1.63;ReadPosRankSum=-1.616;SB=-1.163e+02 GT:AD:DP:GQ:PL 0/1:67,95:162:4:294,0,4 chrVII 7027 . T G 288.46 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.219;DP=156;Dels=0.00;FS=6.843;HaplotypeScore=83.1530;MLEAC=1;MLEAF=0.500;MQ=15.27;MQ0=48;MQRankSum=2.906;QD=1.85;ReadPosRankSum=-3.583;SB=-1.439e+02 GT:AD:DP:GQ:PL 0/1:59,96:156:1:317,0,1 chrVII 7028 . T C 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=81.5322;MLEAC=1;MLEAF=0.500;MQ=15.30;MQ0=48;MQRankSum=0.528;QD=1.05;ReadPosRankSum=0.113;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:116,39:155:99:193,0,134 chrVII 7036 . C T 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DP=143;Dels=0.00;FS=12.176;HaplotypeScore=40.2008;MLEAC=1;MLEAF=0.500;MQ=15.27;MQ0=42;MQRankSum=1.490;QD=0.89;ReadPosRankSum=3.794;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:113,29:143:99:157,0,171 chrVII 7081 . T C 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;DP=50;Dels=0.00;FS=67.876;HaplotypeScore=8.4141;MLEAC=1;MLEAF=0.500;MQ=18.14;MQ0=3;MQRankSum=0.117;QD=1.30;ReadPosRankSum=-1.969;SB=0.528 GT:AD:DP:GQ:PL 0/1:27,23:50:89:95,0,89 chrVII 7088 . T C 189.01 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.6631;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=1;QD=4.85;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:27:222,27,0 chrVII 7089 . A T 188.01 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.6631;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=1;QD=4.82;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:27:221,27,0 chrVII 7099 . C T 88.26 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.23;MQ0=0;QD=2.94;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:15:121,15,0 chrVII 7108 . T C 121.13 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=0;QD=4.18;SB=-4.314e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:18:154,18,0 chrVII 7132 . A G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;DP=33;Dels=0.00;FS=14.600;HaplotypeScore=10.2912;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=1;MQRankSum=-2.023;QD=0.43;ReadPosRankSum=-2.707;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:28,5:33:44:44,0,87 chrVII 7192 . G A 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DP=25;Dels=0.00;FS=16.628;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.21;MQ0=1;MQRankSum=-0.194;QD=1.84;ReadPosRankSum=2.053;SB=-1.250e+00 GT:AD:DP:GQ:PL 0/1:20,5:25:33:76,0,33 chrVII 7208 . G A 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DP=25;Dels=0.00;FS=15.619;HaplotypeScore=7.4445;MLEAC=1;MLEAF=0.500;MQ=14.80;MQ0=3;MQRankSum=-0.231;QD=1.64;ReadPosRankSum=-2.934;SB=-7.837e+00 GT:AD:DP:GQ:PL 0/1:14,11:25:48:71,0,48 chrVII 7210 . A C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=7.4445;MLEAC=1;MLEAF=0.500;MQ=14.51;MQ0=4;MQRankSum=1.531;QD=0.73;ReadPosRankSum=0.957;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:23,3:26:49:49,0,68 chrVII 7211 . T C 130.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.178;DP=25;Dels=0.00;FS=23.373;HaplotypeScore=7.4484;MLEAC=2;MLEAF=1.00;MQ=13.90;MQ0=4;MQRankSum=1.954;QD=5.20;ReadPosRankSum=-1.457;SB=-2.781e+01 GT:AD:DP:GQ:PL 1/1:11,14:25:21:163,21,0 chrVII 7267 . T A 183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795;DP=37;Dels=0.00;FS=21.992;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.14;MQ0=7;MQRankSum=0.147;QD=4.95;ReadPosRankSum=-0.245;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:11,26:37:51:213,0,51 chrVII 7283 . G A 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;DP=35;Dels=0.00;FS=21.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.37;MQ0=7;MQRankSum=0.531;QD=5.34;ReadPosRankSum=2.971;SB=-1.089e+02 GT:AD:DP:GQ:PL 0/1:12,23:35:49:217,0,49 chrVII 7299 . A G 173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=16.1722;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=5;MQRankSum=0.792;QD=4.22;ReadPosRankSum=4.500;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/1:22,19:41:86:203,0,86 chrVII 7460 . C T 180.03 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=4;QD=7.50;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:24:213,24,0 chrVII 7467 . T G 129.20 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.08;MQ0=7;MQRankSum=-1.103;QD=4.46;ReadPosRankSum=-0.788;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:7,22:29:2:158,0,2 chrVII 7485 . A G 272 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.33;MQ0=6;QD=8.24;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:36:305,36,0 chrVII 7504 . G A 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;DP=68;Dels=0.00;FS=31.609;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.55;MQ0=6;MQRankSum=-3.061;QD=2.46;ReadPosRankSum=4.783;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:37,31:68:99:197,0,464 chrVII 7528 . G A 297.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DP=108;Dels=0.00;FS=32.736;HaplotypeScore=5.8764;MLEAC=1;MLEAF=0.500;MQ=36.41;MQ0=6;MQRankSum=-3.417;QD=2.75;ReadPosRankSum=-0.505;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:62,45:108:99:327,0,1033 chrVII 7535 . T C 404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.454;DP=128;Dels=0.00;FS=24.610;HaplotypeScore=67.8028;MLEAC=1;MLEAF=0.500;MQ=35.76;MQ0=6;MQRankSum=-3.947;QD=3.16;ReadPosRankSum=-2.310;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:71,57:128:99:434,0,1178 chrVII 7604 . C T 660.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.712;DP=174;Dels=0.01;FS=1.999;HaplotypeScore=11.7759;MLEAC=1;MLEAF=0.500;MQ=32.26;MQ0=4;MQRankSum=-3.036;QD=3.79;ReadPosRankSum=-0.415;SB=-3.680e+02 GT:AD:DP:GQ:PL 0/1:104,68:173:99:690,0,2002 chrVII 7636 . G T 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;DP=109;Dels=0.00;FS=4.719;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=27.98;MQ0=13;MQRankSum=-1.615;QD=2.69;ReadPosRankSum=-1.496;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:72,34:109:99:323,0,1151 chrVII 7641 . G A 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DP=94;Dels=0.00;FS=5.341;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=13;MQRankSum=-1.118;QD=2.22;ReadPosRankSum=-1.404;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,29:94:99:239,0,1065 chrVII 7668 . T C 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;DP=49;Dels=0.00;FS=8.806;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=16;MQRankSum=-3.590;QD=1.22;ReadPosRankSum=-0.589;SB=-4.800e+01 GT:AD:DP:GQ:PL 0/1:33,15:49:90:90,0,390 chrVII 7671 . A T 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DP=43;Dels=0.00;FS=14.152;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.59;MQ0=17;MQRankSum=-2.854;QD=2.58;ReadPosRankSum=1.453;SB=-3.537e+01 GT:AD:DP:GQ:PL 0/1:31,12:43:99:141,0,313 chrVII 7683 . C T 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DP=51;Dels=0.00;FS=9.401;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.31;MQ0=19;MQRankSum=-2.641;QD=2.65;ReadPosRankSum=1.802;SB=-9.598e+01 GT:AD:DP:GQ:PL 0/1:27,24:51:99:165,0,160 chrVII 7689 . G T 233 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=18.89;MQ0=19;QD=4.31;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:18,36:54:33:266,33,0 chrVII 7723 . T C 1020 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.540;DP=104;Dels=0.00;FS=8.473;HaplotypeScore=9.1721;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=12;MQRankSum=-0.950;QD=9.81;ReadPosRankSum=0.977;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:13,91:104:83:1053,83,0 chrVII 7809 . C T 575.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.933;DP=129;Dels=0.00;FS=62.751;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.71;MQ0=28;MQRankSum=2.479;QD=4.46;ReadPosRankSum=-2.261;SB=-3.380e+02 GT:AD:DP:GQ:PL 0/1:61,67:129:99:605,0,350 chrVII 7847 . C G 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.744;DP=92;Dels=0.00;FS=40.123;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=16.12;MQ0=25;MQRankSum=0.151;QD=1.64;ReadPosRankSum=0.349;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:45,45:92:99:181,0,164 chrVII 7852 . G T 134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.503;DP=78;Dels=0.00;FS=39.322;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=15.82;MQ0=22;MQRankSum=-0.981;QD=1.72;ReadPosRankSum=0.418;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:37,40:78:99:164,0,154 chrVII 7860 . T C 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;DP=74;Dels=0.00;FS=52.795;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=15.78;MQ0=17;MQRankSum=-0.413;QD=1.03;ReadPosRankSum=1.147;SB=-8.788e+01 GT:AD:DP:GQ:PL 0/1:32,39:74:99:106,0,100 chrVII 7867 . G A 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.736;DP=64;Dels=0.00;FS=38.115;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=15.85;MQ0=14;MQRankSum=-1.283;QD=0.69;ReadPosRankSum=1.215;SB=-7.095e+01 GT:AD:DP:GQ:PL 0/1:25,39:64:74:74,0,79 chrVII 7877 . G A 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;DP=58;Dels=0.00;FS=15.767;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.57;MQ0=9;MQRankSum=-1.022;QD=1.55;ReadPosRankSum=0.534;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:15,43:58:29:120,0,29 chrVII 7886 . C T 195.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;DP=62;Dels=0.00;FS=12.119;HaplotypeScore=3.5365;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=9;MQRankSum=-0.715;QD=3.15;ReadPosRankSum=1.719;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:14,48:62:10:225,0,10 chrVII 7889 . T C 285 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;DP=68;Dels=0.00;FS=4.299;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=9;MQRankSum=-0.068;QD=4.19;ReadPosRankSum=1.864;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:14,54:68:39:318,39,0 chrVII 7936 . A T 847 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=3;QD=10.59;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:880,102,0 chrVII 7941 . T C 876 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=3;QD=10.95;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:3,77:80:99:909,105,0 chrVII 7989 . A G 430 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=9;QD=8.96;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:54:463,54,0 chrVII 8004 . C T 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;DP=33;Dels=0.00;FS=29.863;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=12;MQRankSum=-1.398;QD=4.64;ReadPosRankSum=-2.404;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:14,17:33:44:183,0,44 chrVII 8012 . A T 154.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.66;MQ0=12;MQRankSum=-1.735;QD=5.50;ReadPosRankSum=1.519;SB=-8.081e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:21:187,21,0 chrVII 8051 . A G 215.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;DP=75;Dels=0.00;FS=41.750;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=23.02;MQ0=12;MQRankSum=-2.767;QD=2.87;ReadPosRankSum=-2.975;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:33,41:75:99:245,0,406 chrVII 8053 . A T 391.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DP=74;Dels=0.00;FS=50.603;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=22.99;MQ0=11;MQRankSum=3.946;QD=5.28;ReadPosRankSum=3.991;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,30:74:99:421,0,272 chrVII 8075 . C T 366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.339;DP=74;Dels=0.00;FS=54.731;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=23.12;MQ0=9;MQRankSum=4.060;QD=4.95;ReadPosRankSum=2.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,26:74:99:396,0,349 chrVII 8089 . A G 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;DP=76;Dels=0.00;FS=60.284;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=7;MQRankSum=-3.110;QD=4.01;ReadPosRankSum=2.250;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:24,52:76:99:335,0,399 chrVII 8205 . A G 520 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=24;QD=10.61;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:63:553,63,0 chrVII 8216 . T C 795 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=25;QD=12.23;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:96:828,96,0 chrVII 8262 . C T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.735;DP=103;Dels=0.00;FS=54.095;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=34;MQRankSum=-5.842;QD=0.10;ReadPosRankSum=-2.453;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,19:103:40:40,0,981 chrVII 8270 . G A 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.227;DP=97;Dels=0.00;FS=54.202;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=30;MQRankSum=-5.283;QD=0.20;ReadPosRankSum=-1.224;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,18:97:49:49,0,854 chrVII 8275 . C T 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.979;DP=93;Dels=0.00;FS=50.841;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=30;MQRankSum=-5.165;QD=0.39;ReadPosRankSum=-0.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,18:93:66:66,0,839 chrVII 8276 . C T 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.319;DP=91;Dels=0.00;FS=49.865;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=29;MQRankSum=-5.203;QD=0.43;ReadPosRankSum=-0.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,18:91:69:69,0,812 chrVII 8292 . T C 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.785;DP=83;Dels=0.00;FS=53.343;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=26;MQRankSum=-4.953;QD=0.53;ReadPosRankSum=2.961;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,18:83:74:74,0,731 chrVII 8293 . C T 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.017;DP=83;Dels=0.00;FS=53.343;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=26;MQRankSum=-4.970;QD=0.55;ReadPosRankSum=2.961;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,18:83:76:76,0,680 chrVII 8296 . C T 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.615;DP=84;Dels=0.01;FS=54.767;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=28;MQRankSum=-4.835;QD=0.57;ReadPosRankSum=2.725;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,18:83:78:78,0,648 chrVII 8297 . G A 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.441;DP=82;Dels=0.00;FS=54.767;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=28;MQRankSum=-4.817;QD=0.68;ReadPosRankSum=2.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,18:82:86:86,0,656 chrVII 8307 . G A 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;DP=68;Dels=0.00;FS=35.316;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=23.87;MQ0=28;MQRankSum=-3.776;QD=0.41;ReadPosRankSum=0.985;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,18:68:58:58,0,315 chrVII 8320 . T C 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;DP=43;Dels=0.00;FS=35.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.35;MQ0=25;MQRankSum=-0.755;QD=0.61;ReadPosRankSum=-0.044;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:33,10:43:56:56,0,64 chrVII 8333 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.741;DP=30;Dels=0.00;FS=11.181;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=12.54;MQ0=20;MQRankSum=2.383;QD=0.63;ReadPosRankSum=-0.365;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:26,4:30:6:50,6,0 chrVII 8391 . A T 163.06 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.21;MQ0=16;QD=6.52;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:196,21,0 chrVII 8460 . C A 714 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.135;DP=75;Dels=0.00;FS=11.980;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=33;MQRankSum=1.350;QD=9.52;ReadPosRankSum=1.864;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:5,70:75:34:747,34,0 chrVII 8780 . T G 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DP=23;Dels=0.00;FS=2.817;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.29;MQ0=11;MQRankSum=2.219;QD=0.96;ReadPosRankSum=-1.479;SB=-6.588e+01 GT:AD:DP:GQ:PL 0/1:14,9:23:38:52,0,38 chrVII 8794 . G A 399.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.340;DP=42;Dels=0.00;FS=6.435;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=9;MQRankSum=0.490;QD=9.51;ReadPosRankSum=-2.377;SB=-2.905e+02 GT:AD:DP:GQ:PL 1/1:11,31:42:12:432,12,0 chrVII 8825 . C T 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=1;MQRankSum=1.070;QD=17.25;ReadPosRankSum=1.223;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1223,123,0 chrVII 8831 . C T 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;MQRankSum=1.140;QD=18.30;ReadPosRankSum=1.641;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1424,168,0 chrVII 8879 . T C 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=4.098;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;MQRankSum=-1.732;QD=18.59;ReadPosRankSum=1.686;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2803,333,0 chrVII 8957 . A G 1746 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=19.40;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1779,204,0 chrVII 8975 . C T 1330 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=17.50;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1363,150,0 chrVII 8977 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=15.93;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1228,141,0 chrVII 9044 . T G 873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;MQRankSum=-1.086;QD=11.34;ReadPosRankSum=1.363;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:906,108,0 chrVII 9118 . T C 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.771;DP=137;Dels=0.00;FS=11.846;HaplotypeScore=21.0513;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.224;QD=20.26;ReadPosRankSum=3.782;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:5,132:137:99:2808,327,0 chrVII 9188 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=17.8940;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.95;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3425,384,0 chrVII 9253 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-1.077;QD=23.35;ReadPosRankSum=1.650;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3022,342,0 chrVII 9430 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.03;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2851,327,0 chrVII 9885 . T A 2399 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.85;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2432,267,0 chrVII 9989 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1995,219,0 chrVII 10029 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.23;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1901,210,0 chrVII 10077 . G C 2042 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.84;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2075,246,0 chrVII 10093 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.35;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2415,267,0 chrVII 10166 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.37;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1429,156,0 chrVII 10242 . T A 1620 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.00;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1653,183,0 chrVII 10375 . G T 1225 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.645;DP=124;Dels=0.00;FS=10.215;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=30;MQRankSum=1.918;QD=9.88;ReadPosRankSum=-1.871;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:16,105:124:99:1258,117,0 chrVII 10386 . T C 1074 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=128;Dels=0.00;FS=2.619;HaplotypeScore=4.1937;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=35;MQRankSum=-1.288;QD=8.39;ReadPosRankSum=2.763;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:3,109:128:99:1107,126,0 chrVII 10427 . C T 1185 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=32;QD=9.87;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1218,135,0 chrVII 10456 . T A 1756 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=16;MQRankSum=0.777;QD=14.76;ReadPosRankSum=2.139;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:1789,179,0 chrVII 10505 . T G 3020 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=1;QD=21.27;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3053,345,0 chrVII 10700 . G C 1310 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=17;QD=16.17;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1343,156,0 chrVII 10705 . G C 1059.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.543;DP=80;Dels=0.00;FS=28.781;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=18;MQRankSum=0.698;QD=13.24;ReadPosRankSum=-0.905;SB=-1.931e+02 GT:AD:DP:GQ:PL 1/1:18,62:80:21:1092,21,0 chrVII 10804 . A G 875 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=60;Dels=0.00;FS=5.192;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=5;MQRankSum=-1.465;QD=14.58;ReadPosRankSum=3.283;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:4,49:60:99:908,108,0 chrVII 10807 . T C 821 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.758;DP=54;Dels=0.00;FS=9.546;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.63;MQ0=4;MQRankSum=0.272;QD=15.20;ReadPosRankSum=0.866;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:6,48:54:81:854,81,0 chrVII 10812 . C T 684 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=1;QD=16.29;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:717,90,0 chrVII 10814 . T C 786 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=1;QD=19.17;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:819,96,0 chrVII 10823 . T C 547 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=1;QD=17.65;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:66:580,66,0 chrVII 10827 . G A 430 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=17.20;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:51:463,51,0 chrVII 10829 . C G 411 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=16.44;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:51:444,51,0 chrVII 10843 . T G 300 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=12.50;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:39:333,39,0 chrVII 10851 . A G 250 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=11.90;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:283,33,0 chrVII 10852 . A C 259 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=12.33;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:292,33,0 chrVII 10855 . A T 272 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=12.95;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:305,33,0 chrVII 10856 . T C 247 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=5.643;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;MQRankSum=-1.734;QD=11.23;ReadPosRankSum=1.576;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:33:280,33,0 chrVII 10867 . A C 204.01 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=8.87;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:27:237,27,0 chrVII 10875 . T C 174.03 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;QD=5.80;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:24:207,24,0 chrVII 10877 . C G 173.03 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;QD=5.77;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:24:206,24,0 chrVII 10928 . T C 127.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=76;Dels=0.00;FS=26.925;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=30.29;MQ0=0;MQRankSum=2.214;QD=1.67;ReadPosRankSum=-0.156;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:39,37:76:99:157,0,328 chrVII 10933 . A C 316.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.669;DP=80;Dels=0.00;FS=29.499;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=30.11;MQ0=0;MQRankSum=-2.714;QD=3.95;ReadPosRankSum=0.472;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/1:39,41:80:99:346,0,172 chrVII 10950 . G A 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;DP=91;Dels=0.00;FS=28.662;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=29.56;MQ0=0;MQRankSum=2.819;QD=1.06;ReadPosRankSum=-0.004;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:52,39:91:99:126,0,418 chrVII 10963 . C T 459.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.366;DP=93;Dels=0.00;FS=28.590;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=29.57;MQ0=0;MQRankSum=-2.619;QD=4.94;ReadPosRankSum=0.485;SB=-2.860e+02 GT:AD:DP:GQ:PL 0/1:40,53:93:99:489,0,158 chrVII 10969 . A G 511.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.504;DP=104;Dels=0.00;FS=24.953;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=29.51;MQ0=0;MQRankSum=-3.109;QD=4.91;ReadPosRankSum=0.674;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:44,60:104:99:541,0,182 chrVII 10975 . T A 882 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=8.09;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:915,111,0 chrVII 10982 . A T 157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.605;DP=119;Dels=0.00;FS=19.262;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=29.66;MQ0=0;MQRankSum=3.831;QD=1.32;ReadPosRankSum=-0.894;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:68,51:119:99:187,0,504 chrVII 10991 . G C 501.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;DP=118;Dels=0.00;FS=26.505;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.08;MQ0=0;MQRankSum=-2.784;QD=4.25;ReadPosRankSum=1.944;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:57,61:118:99:531,0,233 chrVII 10996 . C T 207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.093;DP=119;Dels=0.00;FS=31.883;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=4.189;QD=1.74;ReadPosRankSum=-0.934;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,57:119:99:237,0,506 chrVII 11005 . A G 214.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.657;DP=119;Dels=0.00;FS=17.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=1;MQRankSum=3.441;QD=1.80;ReadPosRankSum=-0.032;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:61,58:119:99:244,0,398 chrVII 11008 . G A 802 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=3;QD=6.97;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:96:835,96,0 chrVII 11028 . A G 358.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.064;DP=139;Dels=0.00;FS=2.361;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=4;MQRankSum=-1.289;QD=2.58;ReadPosRankSum=-0.925;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:80,59:139:99:388,0,593 chrVII 11031 . G C 384.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.486;DP=144;Dels=0.00;FS=2.273;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=4;MQRankSum=-0.295;QD=2.67;ReadPosRankSum=-1.960;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:80,64:144:99:414,0,551 chrVII 11034 . A G 561.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;DP=147;Dels=0.01;FS=2.238;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=29.04;MQ0=4;MQRankSum=0.141;QD=3.82;ReadPosRankSum=2.276;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:66,80:146:99:591,0,387 chrVII 11039 . C T 378.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.331;DP=152;Dels=0.03;FS=2.267;HaplotypeScore=66.6891;MLEAC=1;MLEAF=0.500;MQ=30.86;MQ0=4;MQRankSum=-1.750;QD=2.49;ReadPosRankSum=-1.862;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:82,66:148:99:408,0,617 chrVII 11076 . A G 1609 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=4;QD=9.81;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:1642,189,0 chrVII 11102 . A G 1901 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=1;QD=10.17;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,182:187:99:1934,219,0 chrVII 11108 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=9.57;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,205:205:99:1995,225,0 chrVII 11149 . A G 1423.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DP=278;Dels=0.00;FS=0.516;HaplotypeScore=17.7066;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=0;MQRankSum=-2.226;QD=5.12;ReadPosRankSum=-1.098;SB=-5.730e+02 GT:AD:DP:GQ:PL 0/1:154,124:278:99:1453,0,1993 chrVII 11164 . A G 5299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=294;Dels=0.00;FS=5.584;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;MQRankSum=1.602;QD=18.02;ReadPosRankSum=1.673;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,292:294:99:5299,603,0 chrVII 11167 . G A 1669.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.961;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=15.9036;MLEAC=1;MLEAF=0.500;MQ=45.35;MQ0=0;MQRankSum=-2.657;QD=5.38;ReadPosRankSum=-0.039;SB=-7.680e+02 GT:AD:DP:GQ:PL 0/1:168,141:310:99:1699,0,2351 chrVII 11241 . C T 2664.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.874;DP=347;Dels=0.00;FS=2.918;HaplotypeScore=19.0569;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=0;MQRankSum=-0.748;QD=7.68;ReadPosRankSum=-0.637;SB=-1.182e+03 GT:AD:DP:GQ:PL 0/1:183,164:347:99:2694,0,3260 chrVII 11344 . A C 3364.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.771;DP=363;Dels=0.00;FS=5.520;HaplotypeScore=32.5747;MLEAC=1;MLEAF=0.500;MQ=52.22;MQ0=1;MQRankSum=2.171;QD=9.27;ReadPosRankSum=1.593;SB=-1.282e+03 GT:AD:DP:GQ:PL 0/1:168,191:363:99:3364,0,2972 chrVII 11391 . G T 2847.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;DP=377;Dels=0.00;FS=21.122;HaplotypeScore=41.2921;MLEAC=1;MLEAF=0.500;MQ=53.18;MQ0=1;MQRankSum=-0.280;QD=7.55;ReadPosRankSum=0.699;SB=-8.310e+02 GT:AD:DP:GQ:PL 0/1:187,189:377:99:2877,0,3149 chrVII 11407 . A G 3084.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.266;DP=352;Dels=0.00;FS=15.517;HaplotypeScore=22.4526;MLEAC=1;MLEAF=0.500;MQ=53.41;MQ0=2;MQRankSum=5.567;QD=8.76;ReadPosRankSum=-1.571;SB=-1.592e+03 GT:AD:DP:GQ:PL 0/1:164,187:352:99:3114,0,2394 chrVII 11409 . C T 2315.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.396;DP=351;Dels=0.00;FS=11.036;HaplotypeScore=23.3165;MLEAC=1;MLEAF=0.500;MQ=53.61;MQ0=2;MQRankSum=-1.436;QD=6.60;ReadPosRankSum=2.174;SB=-6.080e+02 GT:AD:DP:GQ:PL 0/1:190,157:351:99:2345,0,3272 chrVII 11512 . G T 2472.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;DP=325;Dels=0.00;FS=13.535;HaplotypeScore=20.0688;MLEAC=1;MLEAF=0.500;MQ=55.13;MQ0=0;MQRankSum=-3.675;QD=7.61;ReadPosRankSum=1.950;SB=-1.215e+03 GT:AD:DP:GQ:PL 0/1:180,144:325:99:2502,0,3191 chrVII 11607 . T C 639.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.915;DP=217;Dels=0.00;FS=0.528;HaplotypeScore=16.8310;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=2;MQRankSum=-9.797;QD=2.94;ReadPosRankSum=-2.110;SB=-4.270e+02 GT:AD:DP:GQ:PL 0/1:134,83:217:99:669,0,2700 chrVII 11622 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.566;DP=192;Dels=0.00;FS=1.381;HaplotypeScore=12.1648;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=2;MQRankSum=-10.012;QD=0.11;ReadPosRankSum=-3.934;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:136,49:192:52:52,0,2679 chrVII 11635 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.42;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3553,396,0 chrVII 11688 . T C 318.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.837;DP=194;Dels=0.00;FS=55.200;HaplotypeScore=4.9223;MLEAC=1;MLEAF=0.500;MQ=51.84;MQ0=0;MQRankSum=-11.011;QD=1.64;ReadPosRankSum=0.566;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,62:194:99:348,0,2418 chrVII 11692 . C T 337.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.218;DP=201;Dels=0.00;FS=55.751;HaplotypeScore=11.2317;MLEAC=1;MLEAF=0.500;MQ=51.48;MQ0=0;MQRankSum=-11.324;QD=1.68;ReadPosRankSum=1.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,67:201:99:367,0,2305 chrVII 11694 . A G 277.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.817;DP=201;Dels=0.00;FS=55.294;HaplotypeScore=9.6978;MLEAC=1;MLEAF=0.500;MQ=51.48;MQ0=0;MQRankSum=-11.435;QD=1.38;ReadPosRankSum=2.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,67:201:99:307,0,2353 chrVII 11726 . A T 691.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.038;DP=186;Dels=0.01;FS=41.647;HaplotypeScore=91.6542;MLEAC=1;MLEAF=0.500;MQ=47.96;MQ0=0;MQRankSum=-11.572;QD=3.72;ReadPosRankSum=1.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,84:185:99:721,0,1590 chrVII 11728 . T A 681.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.912;DP=182;Dels=0.00;FS=43.435;HaplotypeScore=82.4780;MLEAC=1;MLEAF=0.500;MQ=47.66;MQ0=0;MQRankSum=-11.072;QD=3.74;ReadPosRankSum=0.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,86:182:99:711,0,1478 chrVII 11737 . C T 1267.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.083;DP=167;Dels=0.00;FS=28.358;HaplotypeScore=6.9887;MLEAC=1;MLEAF=0.500;MQ=46.99;MQ0=0;MQRankSum=10.828;QD=7.59;ReadPosRankSum=1.393;SB=-2.710e+02 GT:AD:DP:GQ:PL 0/1:82,82:167:99:1297,0,686 chrVII 11771 . T A 307.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.003;DP=122;Dels=0.00;FS=13.888;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=49.36;MQ0=0;MQRankSum=-9.124;QD=2.52;ReadPosRankSum=-8.507;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,49:122:99:337,0,1385 chrVII 12020 . A G 1654 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1687,192,0 chrVII 12178 . C T 2587 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.64;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2620,288,0 chrVII 12326 . C G 2023 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.64;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2056,231,0 chrVII 12355 . A G 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.239;QD=21.38;ReadPosRankSum=1.702;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2513,285,0 chrVII 12853 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3280,363,0 chrVII 13299 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.84;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1700,186,0 chrVII 14086 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.51;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2892,318,0 chrVII 14630 . T A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.4908;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.25;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3864,417,0 chrVII 15337 . A G 5796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=253;Dels=0.00;FS=4.014;HaplotypeScore=16.9944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.151;QD=22.91;ReadPosRankSum=1.595;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5796,660,0 chrVII 15437 . T C 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=229;Dels=0.00;FS=2.960;HaplotypeScore=13.8112;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.777;QD=22.25;ReadPosRankSum=2.385;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5095,594,0 chrVII 15518 . C T 5333.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.1916;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.42;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5333,594,0 chrVII 15848 . T C 7410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=346;Dels=0.00;FS=3.203;HaplotypeScore=15.2783;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.095;QD=21.42;ReadPosRankSum=1.682;SB=-4.051e+03 GT:AD:DP:GQ:PL 1/1:1,344:346:99:7410,858,0 chrVII 16217 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3508,390,0 chrVII 16377 . A G 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.082;QD=22.87;ReadPosRankSum=1.677;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2914,330,0 chrVII 16509 . T C 2460 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.78;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2493,288,0 chrVII 16563 . A G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=139;Dels=0.00;FS=3.482;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.306;QD=22.55;ReadPosRankSum=1.681;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3167,366,0 chrVII 16596 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.93;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3303,369,0 chrVII 16686 . T C 3061 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.84;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3094,354,0 chrVII 16932 . C T 906 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=24.0133;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.09;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:939,102,0 chrVII 17017 . C T 213.01 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=13.31;SB=-8.002e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:27:246,27,0 chrVII 17018 . C T 210.01 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.00;SB=-7.702e+01 GT:AD:DP:GQ:PL 1/1:0,13:15:27:243,27,0 chrVII 17085 . T G 980 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.33;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1013,114,0 chrVII 17097 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.79;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1135,129,0 chrVII 17234 . A G 1776 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.37;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1809,204,0 chrVII 17261 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=25.27;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2257,252,0 chrVII 17428 . T A 2905 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.84;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2938,327,0 chrVII 17479 . A C 2188 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.33;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2221,249,0 chrVII 17503 . T A 1731 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.86;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1764,192,0 chrVII 17514 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.41;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1469,168,0 chrVII 17690 . T C 1464 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.05;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1497,171,0 chrVII 17724 . C A 949 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=16.95;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:982,108,0 chrVII 17742 . C T 546 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=14.37;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:69:579,69,0 chrVII 17750 . G A 448 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=13.18;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:54:481,54,0 chrVII 17774 . A G 471 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=12.73;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:504,60,0 chrVII 17785 . G C 510 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=13.42;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:543,63,0 chrVII 17818 . T C 802 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=16.04;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:835,96,0 chrVII 17843 . A C 780 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=15.92;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:813,90,0 chrVII 17862 . T A 829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=3.188;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;MQRankSum=-0.416;QD=16.58;ReadPosRankSum=1.594;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:862,99,0 chrVII 17874 . T G 846 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=15.38;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:879,102,0 chrVII 17897 . A T 744 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=15.18;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:777,90,0 chrVII 17982 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=25.02;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1359,147,0 chrVII 18008 . C A 1131 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=22.62;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1164,129,0 chrVII 18259 . G C 2235 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.56;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2268,261,0 chrVII 18394 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.70;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2811,318,0 chrVII 18596 . A G 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.155;DP=103;Dels=0.00;FS=2.838;HaplotypeScore=5.3404;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.586;QD=21.05;ReadPosRankSum=2.402;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2201,233,0 chrVII 18688 . C G 2041 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=22.18;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2074,237,0 chrVII 18690 . A G 1940 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.424;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-1.653;QD=21.80;ReadPosRankSum=1.693;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1973,231,0 chrVII 18693 . A T 1850 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=21.51;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1883,216,0 chrVII 18901 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.37;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3075,339,0 chrVII 19165 . A T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.03;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4252,456,0 chrVII 19189 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.88;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4076,459,0 chrVII 19194 . T A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=20.06;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4053,450,0 chrVII 19265 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=16.62;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2127,243,0 chrVII 19266 . A G 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=128;Dels=0.00;FS=6.561;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.797;QD=16.09;ReadPosRankSum=2.410;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,123:128:99:2092,243,0 chrVII 19402 . A G 2859 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.82;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2892,327,0 chrVII 19710 . C A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=23.77;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3280,360,0 chrVII 19740 . T C 2455 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=21.54;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2488,285,0 chrVII 19775 . T C 1784 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=18.20;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1817,210,0 chrVII 19776 . T C 1796 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=18.52;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1829,207,0 chrVII 19796 . C A 1214 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=0;QD=16.41;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1247,135,0 chrVII 19798 . G T 1140 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=0;QD=15.41;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1173,135,0 chrVII 19801 . T A 1199 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=6.128;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;MQRankSum=-1.732;QD=14.62;ReadPosRankSum=1.690;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1232,138,0 chrVII 19808 . G A 1223 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=14.22;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1256,141,0 chrVII 19841 . A G 1474 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=15.20;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1507,174,0 chrVII 19850 . A T 1592 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=15.02;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1625,180,0 chrVII 19879 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=16.74;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1858,204,0 chrVII 19896 . A G 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5326;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=-1.264;QD=14.69;ReadPosRankSum=1.701;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1664,192,0 chrVII 19914 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=14.11;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1500,168,0 chrVII 19950 . A G 1084 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=12.32;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1117,135,0 chrVII 19961 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=10.73;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:870,105,0 chrVII 19962 . A G 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.713;DP=78;Dels=0.00;FS=20.943;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;MQRankSum=-2.672;QD=10.51;ReadPosRankSum=3.713;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:5,73:78:99:853,105,0 chrVII 19992 . T C 674 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=12.04;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:707,87,0 chrVII 20011 . T C 271 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.3504;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=5.65;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:48:36:304,36,0 chrVII 20016 . T C 306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=6.5330;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;MQRankSum=-1.444;QD=7.46;ReadPosRankSum=1.636;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,35:40:39:339,39,0 chrVII 20048 . C T 751 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7233;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=9.88;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:87:784,87,0 chrVII 20053 . T G 806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.237;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;MQRankSum=0.022;QD=10.33;ReadPosRankSum=1.687;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:839,99,0 chrVII 20130 . T G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=2.922;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=-1.491;QD=22.93;ReadPosRankSum=2.408;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2739,309,0 chrVII 20257 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7993;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=23.89;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2972,336,0 chrVII 20512 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=170;Dels=0.00;FS=2.573;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-2.142;QD=20.09;ReadPosRankSum=2.935;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3415,390,0 chrVII 20521 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.72;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3141,360,0 chrVII 20576 . T A 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.482;DP=138;Dels=0.00;FS=14.221;HaplotypeScore=6.9919;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.628;QD=14.02;ReadPosRankSum=2.716;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:1968,219,0 chrVII 20580 . T A 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.939;DP=132;Dels=0.01;FS=8.180;HaplotypeScore=10.5239;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=0.009;QD=10.89;ReadPosRankSum=2.298;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:1471,162,0 chrVII 20692 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=7.337;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=-1.604;QD=22.50;ReadPosRankSum=2.391;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2868,336,0 chrVII 20726 . T G 2458 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=23.63;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2491,288,0 chrVII 20736 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;MQRankSum=-1.160;QD=22.73;ReadPosRankSum=1.631;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2397,279,0 chrVII 20785 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=19.99;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2012,234,0 chrVII 20789 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=18.93;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1907,213,0 chrVII 20913 . C A 2170 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=101.9096;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=16.82;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2203,246,0 chrVII 20920 . A T 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=102.4109;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;MQRankSum=-1.729;QD=17.53;ReadPosRankSum=2.153;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2084,234,0 chrVII 20931 . G A 1632 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=14.07;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1665,192,0 chrVII 20940 . G A 1416 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=12.87;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1449,165,0 chrVII 20941 . A G 1328 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=12.07;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1361,162,0 chrVII 20962 . T C 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=100;Dels=0.00;FS=8.787;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;MQRankSum=-1.785;QD=10.25;ReadPosRankSum=3.368;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:4,96:100:99:1058,123,0 chrVII 20973 . G T 1140 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=11.87;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1173,138,0 chrVII 21035 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=19.30;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2098,237,0 chrVII 21041 . A G 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=0.060;QD=19.27;ReadPosRankSum=1.702;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2268,261,0 chrVII 21167 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=21.73;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2858,327,0 chrVII 21172 . C T 2755 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=20.56;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2788,318,0 chrVII 21218 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=18.08;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2745,309,0 chrVII 21225 . T C 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=146;Dels=0.00;FS=2.681;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=1.033;QD=17.06;ReadPosRankSum=2.415;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:2524,294,0 chrVII 21241 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=17.37;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2361,267,0 chrVII 21253 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=18.07;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2635,294,0 chrVII 21328 . A G 2527 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=19.00;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2560,308,0 chrVII 21337 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=16.28;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2442,288,0 chrVII 21349 . T C 1519 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.131;DP=140;Dels=0.00;FS=15.479;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;MQRankSum=-3.678;QD=10.85;ReadPosRankSum=4.049;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:6,134:140:99:1552,191,0 chrVII 21350 . C A 1508 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=0;MQRankSum=-2.145;QD=10.93;ReadPosRankSum=0.619;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:1541,186,0 chrVII 21352 . T C 1579 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;MQRankSum=-1.474;QD=11.78;ReadPosRankSum=1.680;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:1612,197,0 chrVII 21410 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.2988;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=18.46;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3785,420,0 chrVII 21472 . A C 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-0.895;QD=19.48;ReadPosRankSum=1.646;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2371,282,0 chrVII 21492 . G A 1554 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=18.07;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1587,192,0 chrVII 21493 . A T 1422 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.48;MQ0=0;MQRankSum=-1.054;QD=17.13;ReadPosRankSum=2.391;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1455,177,0 chrVII 21497 . A G 1401 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;MQRankSum=-0.177;QD=17.51;ReadPosRankSum=2.786;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1434,177,0 chrVII 21504 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.93;MQ0=0;QD=18.25;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1365,165,0 chrVII 21513 . G C 1148 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=17.39;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1181,144,0 chrVII 21523 . C G 1122 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=15.37;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1155,144,0 chrVII 21537 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=14.42;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1331,159,0 chrVII 21543 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=14.84;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1458,174,0 chrVII 21569 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=16.97;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2171,246,0 chrVII 21664 . G T 1559 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.92;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1592,183,0 chrVII 21676 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=16.78;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1258,144,0 chrVII 21694 . C T 855 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=0;QD=14.49;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:888,102,0 chrVII 21704 . G A 541 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=9.66;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:574,72,0 chrVII 21705 . T C 437 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=-0.513;QD=8.09;ReadPosRankSum=1.604;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:39:470,39,0 chrVII 21710 . G A 450 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=7.89;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:60:483,60,0 chrVII 21712 . T A 551 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;QD=9.34;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:69:584,69,0 chrVII 21719 . T G 468 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=-2.415;QD=6.59;ReadPosRankSum=2.381;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:63:501,63,0 chrVII 21722 . T A 510 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;MQRankSum=-1.777;QD=6.54;ReadPosRankSum=2.354;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:63:543,63,0 chrVII 21782 . T A 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=-1.278;QD=17.82;ReadPosRankSum=1.708;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2617,291,0 chrVII 21868 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=19.35;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3149,366,0 chrVII 21919 . G C 1875 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=12.42;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1908,216,0 chrVII 21926 . A G 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;MQRankSum=-1.163;QD=12.08;ReadPosRankSum=1.707;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:1736,198,0 chrVII 22037 . G C 2861 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.67;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2894,330,0 chrVII 22040 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.89;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2923,327,0 chrVII 22247 . T G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.660;QD=23.35;ReadPosRankSum=2.797;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2461,273,0 chrVII 22405 . T C 3022 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3055,351,0 chrVII 23215 . G T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.84;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3865,435,0 chrVII 23248 . A G 4842.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.73;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4842,552,0 chrVII 23297 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1038;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.34;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4202,477,0 chrVII 23450 . C A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=24.15;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4516,489,0 chrVII 23509 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=-0.151;QD=17.69;ReadPosRankSum=1.709;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2687,306,0 chrVII 23516 . T C 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=3.334;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=0.011;QD=16.73;ReadPosRankSum=1.664;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2609,300,0 chrVII 23602 . A G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6095;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.443;QD=18.91;ReadPosRankSum=1.707;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2624,297,0 chrVII 23854 . C G 2238 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=23.07;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2271,258,0 chrVII 24468 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.3713;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.003;QD=21.38;ReadPosRankSum=1.659;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4104,477,0 chrVII 25442 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.08;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:1912,210,0 chrVII 25736 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.07;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3018,339,0 chrVII 27002 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=3.940;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.231;QD=21.21;ReadPosRankSum=1.711;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3542,417,0 chrVII 27788 . T C 2314 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2347,273,0 chrVII 27874 . T C 2769 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.67;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2802,318,0 chrVII 28096 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=2.936;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.561;QD=22.02;ReadPosRankSum=2.367;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2675,306,0 chrVII 28114 . T C 2477 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.12;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2510,285,0 chrVII 28170 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.70;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2248,249,0 chrVII 28634 . T G 2658 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.61;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2691,306,0 chrVII 28799 . C G 2091 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2124,240,0 chrVII 29286 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.5119;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3546,393,0 chrVII 29318 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.73;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3346,366,0 chrVII 29398 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.27;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2505,276,0 chrVII 29477 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.873;DP=127;Dels=0.00;FS=3.335;HaplotypeScore=12.6708;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.818;QD=23.57;ReadPosRankSum=-0.984;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3027,339,0 chrVII 29562 . T C 2532 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.21;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2565,294,0 chrVII 29706 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.54;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3076,339,0 chrVII 29753 . T G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.499;QD=20.99;ReadPosRankSum=1.706;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2846,330,0 chrVII 29844 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=161;Dels=0.00;FS=3.536;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.184;QD=21.94;ReadPosRankSum=1.644;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3532,408,0 chrVII 30012 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.74;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3239,351,0 chrVII 30033 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.558;QD=19.93;ReadPosRankSum=1.675;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2445,276,0 chrVII 30045 . C T 2413 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.11;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2446,267,0 chrVII 30090 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.43;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1987,222,0 chrVII 30102 . G T 1898 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.17;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1931,213,0 chrVII 30120 . A T 2022 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.63;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2055,228,0 chrVII 30150 . A T 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.429;QD=19.42;ReadPosRankSum=1.564;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2033,231,0 chrVII 30324 . T C 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.461;QD=19.12;ReadPosRankSum=2.376;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1314,153,0 chrVII 30348 . C G 1495 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.17;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1528,177,0 chrVII 30426 . T C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.534;QD=22.12;ReadPosRankSum=2.395;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2024,231,0 chrVII 30624 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.07;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3707,408,0 chrVII 31305 . T G 2182 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.39;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2215,255,0 chrVII 31472 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.11;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2620,297,0 chrVII 32037 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.20;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2719,297,0 chrVII 32065 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7310;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.38;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3192,360,0 chrVII 32524 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=155;Dels=0.00;FS=5.431;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.026;QD=22.35;ReadPosRankSum=2.876;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3464,402,0 chrVII 32979 . A T 2599 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.03;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2632,294,0 chrVII 33274 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2163,240,0 chrVII 33441 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2942,318,0 chrVII 33654 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.31;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4011,438,0 chrVII 33744 . A G 2573 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.37;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2606,300,0 chrVII 33860 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.62;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2260,258,0 chrVII 33877 . T C 1861 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.59;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1894,222,0 chrVII 33937 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=88;Dels=0.00;FS=3.163;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.135;QD=20.49;ReadPosRankSum=1.692;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1836,210,0 chrVII 34019 . C T 1832 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.34;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1865,207,0 chrVII 34081 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.69;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1691,195,0 chrVII 34292 . C G 2417 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.81;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2450,285,0 chrVII 34297 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=126;Dels=0.00;FS=7.245;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.849;QD=18.34;ReadPosRankSum=2.411;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2344,267,0 chrVII 34666 . T C 2884 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.71;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2917,330,0 chrVII 34691 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.416;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.835;QD=18.73;ReadPosRankSum=1.701;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2168,246,0 chrVII 34702 . C A 1860 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=18.42;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1893,207,0 chrVII 34789 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=16.87;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2446,276,0 chrVII 34805 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.10;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2640,288,0 chrVII 34992 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.68;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2687,294,0 chrVII 35217 . A G 2145 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2178,258,0 chrVII 35451 . C G 2148 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.70;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2181,249,0 chrVII 35543 . T C 1862 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.92;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1895,213,0 chrVII 35545 . T A 1853 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.59;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1886,213,0 chrVII 35709 . A G 1987 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.07;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2020,225,0 chrVII 35718 . T C 2097 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.40;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2130,240,0 chrVII 35796 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.48;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2573,279,0 chrVII 35877 . A G 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.271;QD=19.95;ReadPosRankSum=1.709;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3006,354,0 chrVII 35919 . A T 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.9891;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.603;QD=24.06;ReadPosRankSum=1.706;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3257,357,0 chrVII 36018 . C G 3028 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3061,360,0 chrVII 36691 . T C 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.346;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.673;QD=20.79;ReadPosRankSum=1.703;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2548,291,0 chrVII 36711 . A G 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.508;QD=20.58;ReadPosRankSum=1.680;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2770,318,0 chrVII 37058 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.28;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2803,315,0 chrVII 37087 . A T 2695 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.26;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2728,306,0 chrVII 37094 . T C 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.231;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.388;QD=18.94;ReadPosRankSum=1.683;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2723,309,0 chrVII 37198 . A C 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.709;HaplotypeScore=7.0311;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.398;QD=24.56;ReadPosRankSum=1.709;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3660,414,0 chrVII 37283 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=128;Dels=0.00;FS=6.104;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.262;QD=23.59;ReadPosRankSum=2.881;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:3053,342,0 chrVII 37436 . A C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.286;QD=20.21;ReadPosRankSum=1.706;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2721,312,0 chrVII 37569 . T A 2179 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6424;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.36;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2212,240,0 chrVII 37581 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.127;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.414;QD=17.52;ReadPosRankSum=1.701;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2013,237,0 chrVII 37655 . A T 3113 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.56;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3146,342,0 chrVII 38036 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.4659;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.77;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3446,384,0 chrVII 38079 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.59;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2797,321,0 chrVII 38202 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3864,441,0 chrVII 38265 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.46;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3355,387,0 chrVII 38407 . T A 2948 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2981,324,0 chrVII 38736 . T C 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=116;Dels=0.00;FS=3.046;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.760;QD=20.31;ReadPosRankSum=2.364;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2389,276,0 chrVII 38820 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.34;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2740,309,0 chrVII 38848 . T A 2503 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.75;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2536,288,0 chrVII 39412 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.51;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3007,339,0 chrVII 39454 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.09;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3335,387,0 chrVII 39493 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.5480;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.87;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4436,507,0 chrVII 39526 . A G 4835.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.4583;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.70;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4835,552,0 chrVII 39549 . G A 4728.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.88;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4728,513,0 chrVII 39607 . A T 2902 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.4747;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.82;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2935,324,0 chrVII 39784 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.76;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3374,375,0 chrVII 39847 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.81;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2907,321,0 chrVII 39953 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.15;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3078,354,0 chrVII 39973 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.077;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=0.446;QD=19.43;ReadPosRankSum=1.680;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2617,294,0 chrVII 39988 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=16.85;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2257,246,0 chrVII 39991 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.98;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2275,249,0 chrVII 40138 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.8697;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.15;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3367,375,0 chrVII 40405 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=2.965;HaplotypeScore=9.4850;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.520;QD=21.58;ReadPosRankSum=2.208;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3518,408,0 chrVII 40507 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6997;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.53;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3529,387,0 chrVII 40619 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.3933;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.55;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3114,354,0 chrVII 40984 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.700;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.223;QD=20.37;ReadPosRankSum=1.708;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2967,345,0 chrVII 41032 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.96;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2632,285,0 chrVII 41041 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.33;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2565,294,0 chrVII 41301 . G T 1803 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.54;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1836,204,0 chrVII 41439 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.5092;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.76;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3397,381,0 chrVII 41497 . A T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.4170;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.61;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3244,369,0 chrVII 41833 . A G 4251.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4251,486,0 chrVII 42433 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.25;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2413,267,0 chrVII 42510 . A T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.15;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3454,378,0 chrVII 42565 . T C 2792 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.70;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2825,324,0 chrVII 42721 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5370;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.67;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3184,360,0 chrVII 43192 . G T 487 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=6.5557;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=12.82;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:57:520,57,0 chrVII 43204 . A T 260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.019;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-2.019;QD=11.30;ReadPosRankSum=2.237;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,21:23:33:293,33,0 chrVII 43308 . T G 1478 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8933;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.312;QD=22.39;ReadPosRankSum=1.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1511,174,0 chrVII 43400 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.25;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2046,237,0 chrVII 43798 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2709,297,0 chrVII 44099 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.3725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2581,288,0 chrVII 44898 . C T 4163.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.14;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4163,453,0 chrVII 45371 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=12.00;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1173,138,0 chrVII 45398 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=11.19;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1454,165,0 chrVII 45399 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=11.48;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1525,174,0 chrVII 45537 . C A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.04;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3431,375,0 chrVII 45669 . A T 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.417;QD=22.54;ReadPosRankSum=1.712;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3967,438,0 chrVII 45723 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.76;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3503,396,0 chrVII 45804 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.81;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3524,390,0 chrVII 46050 . A G 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=105;Dels=0.00;FS=2.585;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.164;QD=21.99;ReadPosRankSum=2.876;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2342,270,0 chrVII 46197 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.65;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1787,201,0 chrVII 46424 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.47;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2631,291,0 chrVII 46524 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.97;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2362,273,0 chrVII 46545 . A G 2029 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.29;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2062,243,0 chrVII 46634 . A G 2257 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2290,264,0 chrVII 46860 . T C 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.482;QD=21.85;ReadPosRankSum=1.607;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2502,291,0 chrVII 46914 . T C 2531 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.22;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2564,294,0 chrVII 47185 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.46;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2079,234,0 chrVII 47187 . G T 2129 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=21.08;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2162,237,0 chrVII 47196 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.04;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2117,228,0 chrVII 47512 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4044,462,0 chrVII 47568 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.55;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3239,354,0 chrVII 47688 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.112;QD=22.17;ReadPosRankSum=1.680;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4479,510,0 chrVII 47898 . A G 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5564;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.326;QD=23.06;ReadPosRankSum=1.671;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3921,444,0 chrVII 47968 . A G 5007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=218;Dels=0.00;FS=7.730;HaplotypeScore=12.3057;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.028;QD=22.97;ReadPosRankSum=2.427;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:5007,590,0 chrVII 47998 . A G 6006.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=9.0062;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.10;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6006,696,0 chrVII 48191 . A G 5404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.9514;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.631;QD=22.15;ReadPosRankSum=1.703;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,241:244:99:5404,615,0 chrVII 48262 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=162;Dels=0.00;FS=5.475;HaplotypeScore=17.5716;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=2.252;QD=19.67;ReadPosRankSum=2.918;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3219,372,0 chrVII 48448 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.05;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2727,300,0 chrVII 48835 . A T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.5096;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.45;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4221,468,0 chrVII 49026 . A T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.7564;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.55;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4375,477,0 chrVII 49323 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2379;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.99;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2650,288,0 chrVII 49965 . G T 3036 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3069,351,0 chrVII 50143 . T A 2125 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2158,237,0 chrVII 50656 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2614,288,0 chrVII 50865 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2101,243,0 chrVII 51330 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=115;Dels=0.00;FS=2.915;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.291;QD=20.79;ReadPosRankSum=2.407;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2424,276,0 chrVII 51531 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.356;QD=22.25;ReadPosRankSum=1.712;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3938,456,0 chrVII 51819 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.8901;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.130;QD=20.90;ReadPosRankSum=1.707;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2938,339,0 chrVII 52326 . A G 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=127;Dels=0.00;FS=2.699;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.517;QD=19.81;ReadPosRankSum=2.372;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2549,297,0 chrVII 53079 . A T 5657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=242;Dels=0.00;FS=11.076;HaplotypeScore=20.2621;MLEAC=2;MLEAF=1.00;MQ=60.56;MQ0=0;MQRankSum=0.091;QD=23.38;ReadPosRankSum=2.938;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:5657,627,0 chrVII 53331 . C G 4402.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=19.6169;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.27;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:4402,504,0 chrVII 53419 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.7878;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.45;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3743,438,0 chrVII 53732 . T C 4750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=210;Dels=0.00;FS=2.758;HaplotypeScore=10.9174;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.239;QD=22.62;ReadPosRankSum=2.414;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4750,558,0 chrVII 53982 . C T 6508.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.21;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6508,717,0 chrVII 54056 . C T 5353.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.6798;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.76;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5353,606,0 chrVII 54122 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=9.1521;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.62;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3393,375,0 chrVII 54197 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.01;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3613,408,0 chrVII 54240 . C G 3013 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.99;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3046,351,0 chrVII 54246 . T G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=8.172;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.666;QD=20.12;ReadPosRankSum=2.286;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2769,318,0 chrVII 54306 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.48;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2695,294,0 chrVII 54483 . T G 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5106;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.889;QD=23.95;ReadPosRankSum=1.685;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3545,399,0 chrVII 54512 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.577;QD=22.83;ReadPosRankSum=1.710;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3562,411,0 chrVII 54723 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.21;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2857,312,0 chrVII 54738 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.93;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2664,297,0 chrVII 54816 . A G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=152;Dels=0.00;FS=6.344;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-0.773;QD=19.72;ReadPosRankSum=2.417;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3031,345,0 chrVII 54821 . T G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.533;QD=18.29;ReadPosRankSum=1.710;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2887,336,0 chrVII 54876 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=15.62;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2486,273,0 chrVII 54879 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=154;Dels=0.00;FS=10.759;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-0.327;QD=15.88;ReadPosRankSum=2.928;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:2478,282,0 chrVII 54933 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.6851;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.98;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,184:189:99:3398,393,0 chrVII 55015 . G T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.20;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4362,477,0 chrVII 55107 . G A 4710.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.1559;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.43;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4710,525,0 chrVII 55494 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.1541;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5369,612,0 chrVII 55761 . A C 5548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.518;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=12.8547;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.847;QD=20.10;ReadPosRankSum=-1.644;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,273:276:99:5548,634,0 chrVII 55935 . C G 3523.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.3107;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.16;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3523,402,0 chrVII 56100 . G T 2134 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.23;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2167,243,0 chrVII 56133 . A T 2345 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.39;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2378,258,0 chrVII 56168 . A T 1991 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.14;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2024,222,0 chrVII 56199 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.44;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1603,177,0 chrVII 56405 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.39;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3951,438,0 chrVII 56473 . C T 6168.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=10.6048;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.81;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6168,678,0 chrVII 56682 . A T 7799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=354;Dels=0.00;FS=2.777;HaplotypeScore=13.8129;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.608;QD=22.03;ReadPosRankSum=2.387;SB=-3.516e+03 GT:AD:DP:GQ:PL 1/1:2,351:354:99:7799,844,0 chrVII 57351 . T C 6331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.430;DP=278;Dels=0.00;FS=14.448;HaplotypeScore=24.7950;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.574;QD=22.77;ReadPosRankSum=3.316;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:4,272:278:99:6331,717,0 chrVII 57522 . T C 5504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=254;Dels=0.00;FS=6.246;HaplotypeScore=8.6866;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-2.005;QD=21.67;ReadPosRankSum=2.314;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:5504,636,0 chrVII 57579 . T C 4648.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.8077;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.72;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4648,546,0 chrVII 57786 . C T 4579.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.5061;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.34;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4579,504,0 chrVII 57855 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=3.747;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.767;QD=20.70;ReadPosRankSum=1.703;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4905,564,0 chrVII 58068 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=180;Dels=0.00;FS=3.035;HaplotypeScore=12.4224;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.132;QD=20.53;ReadPosRankSum=2.381;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3695,435,0 chrVII 58485 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.2338;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.74;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3684,423,0 chrVII 58966 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1794,195,0 chrVII 59068 . A T 2616 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2649,297,0 chrVII 59333 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2698,294,0 chrVII 59379 . T C 2286 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2319,264,0 chrVII 59721 . T C 1241 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.98;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1274,144,0 chrVII 59754 . T C 1067 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.92;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1100,126,0 chrVII 60011 . T C 1819 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=22.46;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1852,210,0 chrVII 60093 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.24;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2427,267,0 chrVII 60240 . C A 1473 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=18.65;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1506,165,0 chrVII 60243 . G T 1480 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=18.73;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1513,162,0 chrVII 60250 . G T 1525 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=18.60;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1558,168,0 chrVII 60270 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=16.73;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1422,165,0 chrVII 60280 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=18.75;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1477,162,0 chrVII 60312 . G A 1343 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.04;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1376,153,0 chrVII 60417 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.67;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1595,180,0 chrVII 60719 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.70;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2702,294,0 chrVII 60729 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.396;QD=18.99;ReadPosRankSum=1.705;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2445,285,0 chrVII 60731 . C A 2384 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.92;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2417,279,0 chrVII 61065 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.26;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2964,321,0 chrVII 61140 . A G 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=133;Dels=0.00;FS=8.313;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.891;QD=22.47;ReadPosRankSum=2.412;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3021,345,0 chrVII 61349 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.0990;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.73;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3887,429,0 chrVII 61434 . T A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3755,426,0 chrVII 61566 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.40;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2632,300,0 chrVII 61573 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.60;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2855,315,0 chrVII 61936 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1782;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.67;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1744,192,0 chrVII 61937 . A G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.040;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.559;QD=19.42;ReadPosRankSum=2.221;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1703,195,0 chrVII 62065 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.683;QD=23.30;ReadPosRankSum=2.366;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2759,318,0 chrVII 62160 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.88;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2481,285,0 chrVII 62447 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.91;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3388,369,0 chrVII 62492 . T C 2798 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.12;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2831,321,0 chrVII 62547 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2980,324,0 chrVII 62921 . A G 2319 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.42;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2352,267,0 chrVII 62979 . G A 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=5.288;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.884;QD=23.47;ReadPosRankSum=0.601;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2333,261,0 chrVII 63054 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=16.1756;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.44;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2027,228,0 chrVII 63099 . G T 2572 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.6761;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.98;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2605,294,0 chrVII 63892 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2123,237,0 chrVII 64092 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.43;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2254,249,0 chrVII 64303 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.24;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1968,216,0 chrVII 64305 . A G 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-1.490;QD=20.83;ReadPosRankSum=1.692;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1845,210,0 chrVII 64358 . A T 1453 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.39;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1486,162,0 chrVII 64365 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.13;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1556,177,0 chrVII 64392 . A G 1757 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1104;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.89;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1790,204,0 chrVII 65062 . A C 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=85;Dels=0.00;FS=2.881;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.490;QD=23.01;ReadPosRankSum=2.391;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:2,81:85:99:1989,225,0 chrVII 65202 . A C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.381;QD=22.94;ReadPosRankSum=1.682;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1616,186,0 chrVII 65241 . T C 1138 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.31;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1171,132,0 chrVII 65331 . G T 1259 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.64;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1292,141,0 chrVII 65356 . T A 989 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.66;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1022,114,0 chrVII 65487 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.50;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1188,135,0 chrVII 65498 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=16.51;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1156,135,0 chrVII 65619 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.73;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2442,273,0 chrVII 65688 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.7591;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.443;QD=23.55;ReadPosRankSum=0.844;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3697,408,0 chrVII 65766 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=125;Dels=0.00;FS=3.495;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.803;QD=21.58;ReadPosRankSum=1.619;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2730,318,0 chrVII 65798 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.70;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3120,354,0 chrVII 65823 . T C 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.981;DP=143;Dels=0.00;FS=3.700;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.521;QD=21.44;ReadPosRankSum=1.635;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3099,346,0 chrVII 66126 . T G 2599 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.84;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2632,303,0 chrVII 66158 . C A 2866 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4214;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.22;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2899,324,0 chrVII 66310 . C G 2827 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.17;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2860,327,0 chrVII 66369 . A G 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=3.549;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.577;QD=21.53;ReadPosRankSum=1.674;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2638,297,0 chrVII 66390 . T C 2735 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.20;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2768,315,0 chrVII 66501 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.53;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2865,321,0 chrVII 66504 . C A 2771 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.11;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2804,306,0 chrVII 66605 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.10;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3425,378,0 chrVII 66659 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.99;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3269,363,0 chrVII 66680 . A T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.1168;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.66;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3430,375,0 chrVII 66712 . G C 3164 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.08;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3197,363,0 chrVII 67009 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.93;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3192,348,0 chrVII 67253 . T C 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.500;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.115;QD=18.53;ReadPosRankSum=1.709;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2812,324,0 chrVII 67355 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.91;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3390,378,0 chrVII 67752 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.65;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3974,435,0 chrVII 68009 . T A 2895 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.10;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2928,324,0 chrVII 68126 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.73;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3559,399,0 chrVII 68176 . T C 4694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=200;Dels=0.00;FS=2.341;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.022;QD=23.47;ReadPosRankSum=3.364;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:4,196:200:99:4694,534,0 chrVII 68203 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.466;QD=17.47;ReadPosRankSum=1.715;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3651,426,0 chrVII 68211 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.61;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4033,447,0 chrVII 68379 . T C 4831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=4.915;HaplotypeScore=7.6123;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.672;QD=19.56;ReadPosRankSum=1.718;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:4831,546,0 chrVII 68385 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=5.5089;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.70;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4806,525,0 chrVII 68542 . T C 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.8102;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.559;QD=21.16;ReadPosRankSum=1.697;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4254,489,0 chrVII 68683 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.117;QD=22.62;ReadPosRankSum=1.592;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3371,384,0 chrVII 68806 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=169;Dels=0.00;FS=4.260;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.371;QD=20.60;ReadPosRankSum=1.691;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3482,408,0 chrVII 69172 . T C 3102 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.16;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3135,360,0 chrVII 69214 . A T 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.896;QD=22.74;ReadPosRankSum=1.692;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2011,222,0 chrVII 69315 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=13.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1052,123,0 chrVII 69424 . T C 414 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=10.89;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:51:447,51,0 chrVII 69455 . G T 507 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=14.08;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:60:540,60,0 chrVII 70277 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.390;QD=20.31;ReadPosRankSum=2.325;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:4793,552,0 chrVII 70804 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.33;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2824,312,0 chrVII 70828 . A G 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.128;QD=21.35;ReadPosRankSum=1.653;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2851,333,0 chrVII 70995 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=24.67;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3429,384,0 chrVII 71083 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.653;QD=22.40;ReadPosRankSum=1.682;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3146,360,0 chrVII 71095 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=21.91;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2925,333,0 chrVII 71125 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=18.05;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2470,285,0 chrVII 71236 . T C 2962 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=16.46;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2995,345,0 chrVII 71410 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.6982;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.05;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3469,378,0 chrVII 71455 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=168;Dels=0.00;FS=6.421;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.390;QD=20.40;ReadPosRankSum=2.347;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3427,399,0 chrVII 71649 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.22;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3533,387,0 chrVII 71650 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.23;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3418,384,0 chrVII 71798 . T G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=187;Dels=0.00;FS=3.028;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.584;QD=23.04;ReadPosRankSum=2.410;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4308,495,0 chrVII 72738 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=5.765;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.052;QD=24.53;ReadPosRankSum=1.706;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3287,378,0 chrVII 72788 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3183,372,0 chrVII 72874 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5637;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.42;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3217,354,0 chrVII 73077 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.02;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4252,480,0 chrVII 73493 . C G 3522.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.2046;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.84;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3522,399,0 chrVII 73615 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.4337;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.816;QD=18.46;ReadPosRankSum=3.347;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:4,122:127:99:2377,273,0 chrVII 73684 . A G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.533;QD=21.43;ReadPosRankSum=1.692;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1897,219,0 chrVII 74148 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=22.58;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2720,294,0 chrVII 74303 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.60;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2344,264,0 chrVII 74322 . A G 2348 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.15;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2381,270,0 chrVII 74365 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.25;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1835,207,0 chrVII 74414 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.67;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1803,207,0 chrVII 74423 . G T 1841 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.46;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1874,213,0 chrVII 74453 . T G 2677 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.08;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2710,306,0 chrVII 74566 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5107;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.36;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3528,387,0 chrVII 74612 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=152;Dels=0.00;FS=4.408;HaplotypeScore=11.6645;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.732;QD=22.45;ReadPosRankSum=1.709;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3413,393,0 chrVII 74686 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4612;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.66;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4449,486,0 chrVII 74769 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0480;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.03;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4016,444,0 chrVII 74831 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.675;DP=204;Dels=0.00;FS=6.013;HaplotypeScore=16.2884;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.285;QD=20.79;ReadPosRankSum=2.665;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:3,198:204:99:4241,467,0 chrVII 74983 . A G 6292.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=26.0040;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.55;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,290:292:99:6292,752,0 chrVII 75154 . A G 7590.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=361;Dels=0.00;FS=5.386;HaplotypeScore=20.3274;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.291;QD=21.02;ReadPosRankSum=2.924;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:3,355:361:99:7590,887,0 chrVII 75209 . T C 6865.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=18.7290;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.00;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,306:312:99:6865,783,0 chrVII 75494 . G T 1055 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=3.85;SB=-3.165e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:1088,126,0 chrVII 75619 . G A 5424.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.3676;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.52;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5424,588,0 chrVII 75625 . A G 5118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=255;Dels=0.00;FS=2.566;HaplotypeScore=5.8169;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-0.390;QD=20.07;ReadPosRankSum=2.430;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5118,588,0 chrVII 75663 . T C 4644.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.0517;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.43;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:4644,525,0 chrVII 75728 . G T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.41;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3238,360,0 chrVII 75778 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.330;QD=23.70;ReadPosRankSum=1.509;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3674,417,0 chrVII 76149 . G A 6083.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=14.3966;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=21.42;SB=-3.620e+03 GT:AD:DP:GQ:PL 1/1:1,280:284:99:6083,666,0 chrVII 76198 . C T 5915.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=19.5437;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.61;SB=-3.478e+03 GT:AD:DP:GQ:PL 1/1:0,282:287:99:5915,657,0 chrVII 76247 . A G 5072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=256;Dels=0.01;FS=5.406;HaplotypeScore=17.8071;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.433;QD=19.81;ReadPosRankSum=2.917;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:3,250:253:99:5072,576,0 chrVII 76466 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.87;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3773,417,0 chrVII 76488 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=157;Dels=0.00;FS=10.735;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.052;QD=19.18;ReadPosRankSum=2.916;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3044,348,0 chrVII 76490 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.29;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3023,345,0 chrVII 76512 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.35;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2862,312,0 chrVII 76563 . T A 2611 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.94;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2644,294,0 chrVII 76663 . G C 2019 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.23;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2052,240,0 chrVII 76882 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.77;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2885,333,0 chrVII 76989 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.323;QD=22.37;ReadPosRankSum=1.686;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3355,384,0 chrVII 77025 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=3.332;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.969;QD=22.02;ReadPosRankSum=1.670;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3721,423,0 chrVII 77052 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.5476;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.53;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3767,426,0 chrVII 77983 . T C 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=0.592;QD=19.09;ReadPosRankSum=2.354;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1522,174,0 chrVII 78029 . A G 2516 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7532;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.19;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2549,288,0 chrVII 78273 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.16;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3922,429,0 chrVII 78291 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.023;QD=20.89;ReadPosRankSum=1.711;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3489,405,0 chrVII 78645 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3734;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.91;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4141,459,0 chrVII 78859 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=17.66;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1393,159,0 chrVII 78970 . T C 790 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.17;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:93:823,93,0 chrVII 78986 . A C 306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.788;QD=13.91;ReadPosRankSum=1.576;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:42:339,42,0 chrVII 79038 . G A 136.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=8.00;SB=-1.229e+02 GT:AD:DP:GQ:PL 1/1:0,14:17:21:169,21,0 chrVII 79107 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.40;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1780,204,0 chrVII 79268 . A G 2466 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.82;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2499,291,0 chrVII 79504 . T G 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=221;Dels=0.00;FS=2.682;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.163;QD=23.01;ReadPosRankSum=2.371;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:2,217:221:99:5086,585,0 chrVII 79586 . C A 4690.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.1222;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4690,528,0 chrVII 79718 . G A 4698.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.2106;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.37;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4698,519,0 chrVII 80122 . T C 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=2.926;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.482;QD=23.61;ReadPosRankSum=2.347;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2866,327,0 chrVII 80305 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.162;QD=22.27;ReadPosRankSum=1.705;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2884,327,0 chrVII 80339 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.03;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2346,261,0 chrVII 80345 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.55;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2265,252,0 chrVII 80603 . A G 86.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.508;DP=26;Dels=0.00;FS=3.925;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=1;MQRankSum=1.771;QD=3.32;ReadPosRankSum=3.307;SB=-1.212e+02 GT:AD:DP:GQ:PL 1/1:8,16:26:15:119,15,0 chrVII 80643 . T C 149.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;MQRankSum=-1.122;QD=4.97;ReadPosRankSum=2.286;SB=-1.541e+02 GT:AD:DP:GQ:PL 1/1:2,28:30:21:182,21,0 chrVII 80653 . G A 442 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=10.28;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:54:475,54,0 chrVII 80875 . C A 2920 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=24.13;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2953,321,0 chrVII 81094 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.133;DP=187;Dels=0.00;FS=8.032;HaplotypeScore=16.0021;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.135;QD=20.94;ReadPosRankSum=3.413;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:3915,450,0 chrVII 81196 . T C 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=217;Dels=0.00;FS=5.864;HaplotypeScore=15.8803;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.577;QD=20.40;ReadPosRankSum=2.875;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:4426,504,0 chrVII 81306 . T A 5344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=253;Dels=0.00;FS=3.012;HaplotypeScore=23.6515;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.209;QD=21.12;ReadPosRankSum=2.420;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:5344,603,0 chrVII 82376 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.56;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2068,234,0 chrVII 82621 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.29;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3500,378,0 chrVII 82634 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5468;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.23;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3802,417,0 chrVII 82858 . A G 3009 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.62;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3042,351,0 chrVII 83118 . T G 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=200;Dels=0.00;FS=2.832;HaplotypeScore=12.6363;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.142;QD=22.19;ReadPosRankSum=2.351;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4437,516,0 chrVII 83355 . T C 4639.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.9875;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.74;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4639,528,0 chrVII 83730 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4097,468,0 chrVII 83793 . A G 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=154;Dels=0.00;FS=2.586;HaplotypeScore=12.5851;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.333;QD=20.62;ReadPosRankSum=2.915;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3208,366,0 chrVII 83832 . C A 3050 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.59;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3083,342,0 chrVII 84066 . C G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.39;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3813,429,0 chrVII 84460 . A T 2748 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.52;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2781,309,0 chrVII 84785 . A G 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=59;Dels=0.00;FS=9.100;HaplotypeScore=7.5407;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.404;QD=19.92;ReadPosRankSum=2.809;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:3,55:59:99:1208,141,0 chrVII 84838 . T G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.469;QD=21.10;ReadPosRankSum=1.696;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2080,249,0 chrVII 84923 . A T 2779 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2812,315,0 chrVII 85190 . A C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.072;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.415;QD=20.08;ReadPosRankSum=1.683;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2884,336,0 chrVII 85364 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=160;Dels=0.00;FS=2.952;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.252;QD=20.64;ReadPosRankSum=2.418;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,154:160:99:3302,384,0 chrVII 85539 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.49;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3711,405,0 chrVII 85628 . C T 5178.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.5830;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.08;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5178,570,0 chrVII 85718 . C T 5660.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5660,612,0 chrVII 85757 . G A 5210.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.1259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5210,570,0 chrVII 85871 . G A 5929.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=10.7989;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.63;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5929,663,0 chrVII 86297 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.17;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3753,420,0 chrVII 86321 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.96;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3333,378,0 chrVII 86411 . A C 4096.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.51;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4096,474,0 chrVII 86585 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.06;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2962,327,0 chrVII 86645 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.67;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3016,333,0 chrVII 86720 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.99;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3497,393,0 chrVII 86732 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.29;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3220,354,0 chrVII 87051 . C A 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.9604;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.722;QD=20.19;ReadPosRankSum=1.155;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2456,257,0 chrVII 87392 . A T 1564 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.84;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1597,174,0 chrVII 87712 . A G 1723 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1756,204,0 chrVII 87769 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.55;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1492,171,0 chrVII 88301 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.5497;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.10;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3460,393,0 chrVII 88664 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.55;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2499,282,0 chrVII 88681 . A G 2611 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.0860;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.72;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2644,303,0 chrVII 89597 . T C 197.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.91;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:27:230,27,0 chrVII 89786 . C A 121.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=12.11;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:10:18:154,18,0 chrVII 89900 . T C 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=1.299;QD=1.52;ReadPosRankSum=0.493;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:17,4:21:33:62,0,33 chrVII 90087 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.70;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1834,210,0 chrVII 90290 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.40;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3884,438,0 chrVII 90417 . T C 3143 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.28;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3176,380,0 chrVII 90592 . G T 3049 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.94;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3082,345,0 chrVII 90761 . T C 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.204;QD=21.46;ReadPosRankSum=1.698;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2222,255,0 chrVII 90968 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3453,378,0 chrVII 91031 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.16;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3798,417,0 chrVII 91429 . T C 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.600;QD=24.06;ReadPosRankSum=1.666;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2559,291,0 chrVII 91467 . G A 2141 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2174,237,0 chrVII 91652 . G T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.6506;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.59;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3264,366,0 chrVII 91912 . C T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.10;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4450,492,0 chrVII 91913 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.93;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4449,486,0 chrVII 92390 . A T 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.769;QD=20.78;ReadPosRankSum=2.418;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3254,366,0 chrVII 92868 . G A 5801.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=12.9406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5801,651,0 chrVII 93270 . C T 5756.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5756,627,0 chrVII 93397 . G A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.86;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4080,462,0 chrVII 93435 . C T 4394.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.01;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4394,483,0 chrVII 93541 . G T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.74;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3466,375,0 chrVII 93622 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.59;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2653,291,0 chrVII 93809 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.96;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2573,285,0 chrVII 94001 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=194;Dels=0.00;FS=4.305;HaplotypeScore=13.9318;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.321;QD=19.71;ReadPosRankSum=1.661;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3824,447,0 chrVII 94124 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.78;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4256,477,0 chrVII 94415 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.55;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1823,204,0 chrVII 94586 . T C 1441 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.17;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1474,168,0 chrVII 94635 . A G 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.054;QD=18.92;ReadPosRankSum=1.678;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1244,141,0 chrVII 94647 . A G 1178 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6934;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.00;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1211,138,0 chrVII 94727 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.28;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2408,273,0 chrVII 94874 . G T 2199 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.77;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2232,246,0 chrVII 95005 . T A 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4728;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.236;QD=21.50;ReadPosRankSum=1.677;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2720,306,0 chrVII 95293 . A G 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-1.697;QD=19.74;ReadPosRankSum=1.628;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2007,225,0 chrVII 95294 . A G 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=97;Dels=0.00;FS=2.599;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.552;QD=19.71;ReadPosRankSum=2.824;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1945,219,0 chrVII 95342 . T C 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=102;Dels=0.00;FS=9.807;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.353;QD=19.29;ReadPosRankSum=2.377;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2001,228,0 chrVII 95514 . G C 1576 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.74;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1609,183,0 chrVII 95542 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.62;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1559,180,0 chrVII 95547 . C A 1520 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.27;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1553,171,0 chrVII 95609 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.56;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2060,228,0 chrVII 95670 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.99;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2216,246,0 chrVII 95714 . A G 2325 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.79;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2358,270,0 chrVII 95789 . C A 2532 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=116.9319;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.18;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2565,294,0 chrVII 95935 . C T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=24.53;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3826,417,0 chrVII 96070 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=1.043;QD=22.30;ReadPosRankSum=-0.316;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4103,429,0 chrVII 96091 . G A 3942.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6771;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.75;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3942,432,0 chrVII 96189 . C A 5220.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.20;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5220,576,0 chrVII 96214 . G A 4826.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.76;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4826,534,0 chrVII 96337 . T C 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=257;Dels=0.00;FS=3.183;HaplotypeScore=19.2915;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.974;QD=19.72;ReadPosRankSum=1.691;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:5069,579,0 chrVII 96562 . C T 4657.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.7712;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.66;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4657,528,0 chrVII 96699 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.8129;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.79;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4206,465,0 chrVII 96729 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.7538;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.82;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4234,459,0 chrVII 96767 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.62;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3981,444,0 chrVII 96869 . G A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.75;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4596,525,0 chrVII 96993 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.67;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3287,354,0 chrVII 97008 . C G 3433.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.73;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3433,396,0 chrVII 97164 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=18.71;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2428,264,0 chrVII 97169 . G C 2311 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=16.75;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2344,270,0 chrVII 97270 . T A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.5872;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.96;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4109,462,0 chrVII 97411 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.39;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2810,318,0 chrVII 97412 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=5.9302;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.54;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2870,321,0 chrVII 97485 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.77;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3538,402,0 chrVII 97642 . C T 4596.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.9040;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.10;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4596,504,0 chrVII 98010 . G A 4945.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.0077;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.79;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4945,543,0 chrVII 98090 . C A 4657.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.7426;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.36;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4657,501,0 chrVII 98117 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.45;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4275,468,0 chrVII 98124 . G T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=15.35;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:3777,429,0 chrVII 98148 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=8.2695;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=14.94;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:3899,435,0 chrVII 98387 . T G 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=240;Dels=0.00;FS=4.303;HaplotypeScore=20.4832;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-0.373;QD=18.63;ReadPosRankSum=1.703;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:4471,513,0 chrVII 98492 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.14;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4185,474,0 chrVII 98589 . G T 2390 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0601;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;MQRankSum=-1.283;QD=18.11;ReadPosRankSum=1.415;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2423,267,0 chrVII 98592 . A C 2231 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=127;Dels=0.00;FS=2.594;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;MQRankSum=-2.405;QD=17.57;ReadPosRankSum=2.945;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2264,252,0 chrVII 98593 . T C 2267 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.604;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;MQRankSum=-1.023;QD=17.85;ReadPosRankSum=1.623;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2300,258,0 chrVII 99020 . T C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.751;QD=23.86;ReadPosRankSum=1.703;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2896,330,0 chrVII 99303 . T A 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=134;Dels=0.00;FS=3.023;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.803;QD=21.60;ReadPosRankSum=2.413;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2928,321,0 chrVII 99326 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.40;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3073,342,0 chrVII 99361 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.10;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3292,378,0 chrVII 99508 . A G 2534 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.12;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2567,288,0 chrVII 99976 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.378;QD=23.80;ReadPosRankSum=1.693;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2127,243,0 chrVII 100110 . T C 1936 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1969,225,0 chrVII 100175 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.40;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1980,219,0 chrVII 100351 . T A 1914 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.51;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1947,219,0 chrVII 100717 . A G 2911 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.09;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2944,339,0 chrVII 100756 . T C 2938 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.50;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2971,339,0 chrVII 100825 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3008,342,0 chrVII 100858 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.46;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3414,384,0 chrVII 100904 . T C 2882 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.44;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2915,336,0 chrVII 100984 . T C 2798 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7405;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.36;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2831,324,0 chrVII 101050 . A G 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.661;DP=105;Dels=0.00;FS=2.603;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.311;QD=20.80;ReadPosRankSum=2.835;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:3,101:105:99:2217,255,0 chrVII 101815 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.500;QD=23.81;ReadPosRankSum=2.368;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4310,495,0 chrVII 101923 . T C 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=202;Dels=0.00;FS=3.398;HaplotypeScore=13.0065;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.426;QD=22.18;ReadPosRankSum=1.715;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,198:202:99:4480,510,0 chrVII 102109 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3037,345,0 chrVII 102338 . A G 1082 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.42;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1115,132,0 chrVII 102510 . G A 1040 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=17.93;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1073,129,0 chrVII 102955 . C G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3375,384,0 chrVII 103047 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.9446;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.46;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3378,375,0 chrVII 103541 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=155;Dels=0.00;FS=11.855;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.396;QD=21.57;ReadPosRankSum=2.864;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3343,393,0 chrVII 103942 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=160;Dels=0.00;FS=2.970;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-2.204;QD=21.83;ReadPosRankSum=2.327;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3493,396,0 chrVII 104051 . G T 487.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.356;DP=130;Dels=0.00;FS=216.727;HaplotypeScore=12.0632;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=0;MQRankSum=-1.048;QD=3.75;ReadPosRankSum=-6.717;SB=0.011 GT:AD:DP:GQ:PL 0/1:78,52:130:99:517,0,1088 chrVII 104148 . C A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.67;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3252,363,0 chrVII 104760 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.05;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2679,294,0 chrVII 106248 . T G 2939 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5738;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.55;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:2972,339,0 chrVII 106419 . G C 2742 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.64;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2775,312,0 chrVII 106438 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.95;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2994,342,0 chrVII 106704 . T C 2686 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.04;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2719,315,0 chrVII 106716 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.16;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2826,312,0 chrVII 106751 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8507;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.08;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2824,306,0 chrVII 106941 . T G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.619;QD=23.10;ReadPosRankSum=1.690;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3811,435,0 chrVII 107169 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.63;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4023,444,0 chrVII 107461 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.059;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.903;QD=19.59;ReadPosRankSum=4.115;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:6,173:180:99:3527,405,0 chrVII 107657 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.66;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1376,156,0 chrVII 107757 . T G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.448;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.451;QD=21.12;ReadPosRankSum=0.451;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1575,183,0 chrVII 107775 . T C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=80;Dels=0.00;FS=5.980;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.785;QD=20.05;ReadPosRankSum=2.836;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1637,192,0 chrVII 107814 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.83;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2129,240,0 chrVII 108124 . A G 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=83;Dels=0.00;FS=2.775;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.198;QD=19.76;ReadPosRankSum=2.389;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:3,79:83:99:1673,189,0 chrVII 108238 . G C 2232 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6791;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.01;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2265,258,0 chrVII 108343 . A G 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.753;QD=24.05;ReadPosRankSum=1.582;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2246,255,0 chrVII 108369 . A C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.433;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.518;QD=18.26;ReadPosRankSum=1.696;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1822,210,0 chrVII 108374 . A C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=97;Dels=0.00;FS=3.649;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.602;QD=18.27;ReadPosRankSum=1.659;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1805,204,0 chrVII 108556 . G A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.65;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3973,450,0 chrVII 108797 . G A 4902.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.49;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4902,555,0 chrVII 109424 . T G 5645.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.95;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5645,639,0 chrVII 109504 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=149;Dels=0.00;FS=8.183;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.569;QD=20.40;ReadPosRankSum=2.367;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3072,351,0 chrVII 109776 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=128;Dels=0.00;FS=5.866;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.661;QD=21.76;ReadPosRankSum=2.898;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2818,324,0 chrVII 109784 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.98;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2571,303,0 chrVII 109841 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.97;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2472,270,0 chrVII 109880 . A T 2286 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.36;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2319,258,0 chrVII 110083 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2771,309,0 chrVII 110293 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3747,405,0 chrVII 110415 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.20;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2719,297,0 chrVII 110628 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=22.96;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3247,366,0 chrVII 110730 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-6.737;DP=166;Dels=0.00;FS=111.196;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;MQRankSum=8.366;QD=16.22;ReadPosRankSum=9.489;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:44,122:166:99:2725,312,0 chrVII 110740 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=157;Dels=0.00;FS=2.535;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;MQRankSum=-2.147;QD=16.61;ReadPosRankSum=2.854;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:3,114:157:99:2640,303,0 chrVII 110769 . A G 2279 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=21.10;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2312,267,0 chrVII 110976 . T C 1024.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.982;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=18.96;MQ0=2;MQRankSum=-1.913;QD=10.04;ReadPosRankSum=-0.029;SB=-1.594e+01 GT:AD:DP:GQ:PL 1/1:10,92:102:26:1057,26,0 chrVII 110996 . C A 640.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7870;MLEAC=1;MLEAF=0.500;MQ=20.04;MQ0=2;MQRankSum=-2.252;QD=10.16;ReadPosRankSum=-1.414;SB=-1.848e+01 GT:AD:DP:GQ:PL 0/1:7,56:63:24:670,0,24 chrVII 111027 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=2;QD=2.53;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:9:6:54,6,0 chrVII 111113 . T C 637 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.01;MQ0=14;QD=7.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,71:81:81:670,81,0 chrVII 111227 . A T 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=14.2824;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=1;MQRankSum=1.684;QD=4.00;ReadPosRankSum=-0.241;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:10,8:18:55:102,0,55 chrVII 111230 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=15;Dels=0.00;FS=21.553;HaplotypeScore=16.2550;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;MQRankSum=-0.637;QD=1.59;ReadPosRankSum=-0.289;SB=1.24 GT:AD:DP:GQ:PL 1/1:8,7:15:6:55,6,0 chrVII 111455 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=23;Dels=0.00;FS=24.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=0;MQRankSum=0.600;QD=1.03;ReadPosRankSum=-0.055;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:21,2:23:6:55,6,0 chrVII 111458 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=23;Dels=0.00;FS=24.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=0;MQRankSum=1.473;QD=0.99;ReadPosRankSum=-0.055;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:21,2:23:6:54,6,0 chrVII 111462 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=23;Dels=0.00;FS=24.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=0;MQRankSum=0.818;QD=0.95;ReadPosRankSum=2.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:21,2:23:6:53,6,0 chrVII 111467 . A C 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.960;DP=24;Dels=0.00;FS=33.062;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;MQRankSum=0.087;QD=1.12;ReadPosRankSum=2.706;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:21,3:24:6:58,6,0 chrVII 111470 . C T 29.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;QD=1.19;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:25:6:61,6,0 chrVII 111476 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.21;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:48,6,0 chrVII 111477 . G A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrVII 111482 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.57;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:49,6,0 chrVII 111489 . T G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.96;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:51,6,0 chrVII 111564 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;QD=17.97;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1650,189,0 chrVII 111579 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=20.36;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2130,240,0 chrVII 111592 . G T 2506 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=20.37;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2539,282,0 chrVII 111632 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=21.78;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3126,351,0 chrVII 111678 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=23.86;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3507,393,0 chrVII 111703 . A T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=24.21;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3776,426,0 chrVII 111770 . G C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=24.11;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3375,381,0 chrVII 111789 . T C 2847 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=21.25;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2880,330,0 chrVII 111809 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.41;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2983,345,0 chrVII 111921 . G C 3115 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=22.09;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3148,366,0 chrVII 111953 . T C 2365 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=22.31;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2398,276,0 chrVII 111969 . A G 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3787;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=-1.149;QD=17.61;ReadPosRankSum=2.357;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1900,219,0 chrVII 111972 . A G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=-1.010;QD=17.65;ReadPosRankSum=3.178;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:4,103:107:99:1922,225,0 chrVII 111999 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=20.74;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1879,219,0 chrVII 112033 . G T 2077 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.64;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2110,228,0 chrVII 112117 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.77;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:947,108,0 chrVII 112158 . C T 960 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.41;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:993,111,0 chrVII 112207 . A G 1089 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.75;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1122,126,0 chrVII 112383 . G A 1002 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1035,114,0 chrVII 112793 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.58;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3883,432,0 chrVII 112862 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.81;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4122,474,0 chrVII 112994 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=11.96;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:3191,354,0 chrVII 113210 . A G 5353.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.5967;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.12;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5353,618,0 chrVII 113411 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.78;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4072,459,0 chrVII 113605 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=160;Dels=0.00;FS=2.882;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.594;QD=22.79;ReadPosRankSum=2.341;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3646,417,0 chrVII 113792 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.0099;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.19;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4059,444,0 chrVII 113828 . A C 3211.99 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.86;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3245,378,0 chrVII 114332 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.95;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3108,345,0 chrVII 114609 . A G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.7113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.271;QD=22.07;ReadPosRankSum=1.705;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2858,321,0 chrVII 114793 . C A 2286 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.17;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2319,261,0 chrVII 114840 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.2095;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.096;QD=23.86;ReadPosRankSum=1.709;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3508,399,0 chrVII 114918 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.99;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2504,276,0 chrVII 115026 . G T 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.264;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=1.428;QD=20.88;ReadPosRankSum=1.006;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3144,323,0 chrVII 115172 . C G 1237 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=18.46;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1270,147,0 chrVII 115250 . T C 234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;MQRankSum=-2.203;QD=3.34;ReadPosRankSum=2.380;SB=-5.302e+01 GT:AD:DP:GQ:PL 1/1:2,68:70:30:267,30,0 chrVII 115320 . T C 1244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.385;QD=23.04;ReadPosRankSum=1.668;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1277,147,0 chrVII 115361 . T C 1573 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=22.15;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1606,180,0 chrVII 115399 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;QD=22.55;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2220,249,0 chrVII 115438 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=21.80;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2191,249,0 chrVII 115467 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=19.82;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1896,210,0 chrVII 115476 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.07;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1839,198,0 chrVII 115528 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=1;QD=20.70;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1917,213,0 chrVII 115633 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.23;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1546,168,0 chrVII 115734 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.20;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2186,246,0 chrVII 115747 . C G 1900 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=23.46;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1933,219,0 chrVII 115815 . A C 1763 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.24;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1796,204,0 chrVII 115872 . C A 2591 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.91;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2624,297,0 chrVII 116400 . A G 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=3.280;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.503;QD=22.34;ReadPosRankSum=1.711;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3731,426,0 chrVII 116772 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=211;Dels=0.00;FS=8.981;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.696;QD=22.04;ReadPosRankSum=2.414;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4651,525,0 chrVII 116827 . A C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.081;QD=21.65;ReadPosRankSum=1.711;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3616,411,0 chrVII 117199 . A C 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.402;QD=20.63;ReadPosRankSum=1.666;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4395,501,0 chrVII 117308 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=194;Dels=0.00;FS=2.801;HaplotypeScore=15.6875;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.388;QD=20.83;ReadPosRankSum=2.424;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4041,462,0 chrVII 117486 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3042,336,0 chrVII 117630 . A G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=113;Dels=0.00;FS=6.010;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.264;QD=19.77;ReadPosRankSum=2.882;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:3,108:113:99:2267,258,0 chrVII 117810 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.0679;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.44;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2027,225,0 chrVII 117877 . A G 2661 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.14;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2694,303,0 chrVII 118011 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.81;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3399,390,0 chrVII 118832 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=168;Dels=0.00;FS=2.812;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.037;QD=22.49;ReadPosRankSum=2.331;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3779,429,0 chrVII 119075 . C T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.27;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4176,468,0 chrVII 119099 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.02;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3824,423,0 chrVII 119177 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.45;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3186,351,0 chrVII 119183 . A T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.80;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3259,354,0 chrVII 119456 . C A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.6996;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.07;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3560,396,0 chrVII 119852 . C T 4991.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.0100;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.18;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4991,549,0 chrVII 119894 . G A 5139.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.24;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:5139,570,0 chrVII 120263 . T A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.7990;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.69;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3564,390,0 chrVII 120506 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=151;Dels=0.00;FS=2.587;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.020;QD=21.97;ReadPosRankSum=2.926;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3317,387,0 chrVII 120641 . G A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.02;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3722,423,0 chrVII 121103 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=24.81;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,120:123:99:3085,339,0 chrVII 121391 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.334;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.196;QD=22.37;ReadPosRankSum=1.713;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4072,480,0 chrVII 121571 . T C 5129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=0.267;QD=22.59;ReadPosRankSum=1.656;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5129,588,0 chrVII 121627 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=4.624;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=0.538;QD=20.47;ReadPosRankSum=1.708;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3063,360,0 chrVII 121769 . G T 2563 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=21.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2596,282,0 chrVII 121902 . A G 2856 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.41;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2889,336,0 chrVII 121931 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=20.19;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2234,243,0 chrVII 121932 . T C 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=0.109;QD=19.45;ReadPosRankSum=1.670;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2192,249,0 chrVII 122130 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.4992;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.67;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4143,450,0 chrVII 122191 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.733;DP=179;Dels=0.00;FS=17.124;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.238;QD=21.33;ReadPosRankSum=3.803;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:5,173:179:99:3818,444,0 chrVII 122377 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=20.49;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2697,291,0 chrVII 122382 . T G 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=137;Dels=0.02;FS=0.000;HaplotypeScore=3.5646;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.664;QD=18.83;ReadPosRankSum=1.706;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2613,303,0 chrVII 122391 . C A 2832 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.09;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2865,321,0 chrVII 122672 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.89;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2572,294,0 chrVII 122876 . T G 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=190;Dels=0.00;FS=5.373;HaplotypeScore=18.4636;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.286;QD=21.18;ReadPosRankSum=1.810;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:4024,474,0 chrVII 123192 . A G 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=211;Dels=0.00;FS=2.904;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.608;QD=21.49;ReadPosRankSum=2.391;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4534,516,0 chrVII 123330 . G C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.23;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3979,465,0 chrVII 123812 . C T 5725.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=17.7697;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.60;SB=-3.331e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5725,627,0 chrVII 124046 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.7314;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.28;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:4643,507,0 chrVII 124322 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=61.51;MQ0=0;QD=22.10;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3293,363,0 chrVII 124460 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=22.61;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1842,207,0 chrVII 124535 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.39;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2343,267,0 chrVII 124850 . T C 3705.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.54;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3705,426,0 chrVII 124916 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.065;DP=187;Dels=0.00;FS=5.185;HaplotypeScore=18.2282;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.268;QD=19.44;ReadPosRankSum=3.403;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:4,182:187:99:3635,417,0 chrVII 124970 . T C 3057 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.15;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3090,354,0 chrVII 125066 . A G 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=6.667;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.416;QD=22.66;ReadPosRankSum=2.413;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3070,354,0 chrVII 125090 . T C 3148 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.56;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3181,363,0 chrVII 125177 . G A 4333.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.68;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4333,465,0 chrVII 125195 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.04;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3901,441,0 chrVII 125277 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.465;QD=20.87;ReadPosRankSum=1.653;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3694,423,0 chrVII 125279 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.58;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3798,423,0 chrVII 125897 . A C 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.962;QD=21.58;ReadPosRankSum=2.231;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2731,290,0 chrVII 125951 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4716;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.27;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2688,294,0 chrVII 125966 . A G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=3.036;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.454;QD=18.38;ReadPosRankSum=2.349;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2275,261,0 chrVII 126466 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=169;Dels=0.00;FS=6.973;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.025;QD=23.01;ReadPosRankSum=2.377;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3889,444,0 chrVII 126683 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=170;Dels=0.00;FS=2.822;HaplotypeScore=11.3877;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.817;QD=19.95;ReadPosRankSum=2.406;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3392,390,0 chrVII 126761 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3558,396,0 chrVII 126836 . A T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.8036;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.89;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3632,405,0 chrVII 126869 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.5343;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.35;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4017,450,0 chrVII 127083 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.04;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3659,399,0 chrVII 127409 . C T 6535.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=23.8855;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.68;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:6535,714,0 chrVII 127838 . C T 2512 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.66;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2545,291,0 chrVII 127892 . G T 2353 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.30;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2386,273,0 chrVII 127940 . A G 2550 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.73;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2583,297,0 chrVII 127948 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.12;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2931,321,0 chrVII 127981 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.69;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3070,336,0 chrVII 128179 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.15;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3028,327,0 chrVII 128483 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.98;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4068,465,0 chrVII 128648 . T A 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.349;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.152;QD=21.70;ReadPosRankSum=1.710;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3472,378,0 chrVII 128670 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.6601;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.062;QD=20.74;ReadPosRankSum=0.573;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3692,370,0 chrVII 129077 . A G 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.8658;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.296;QD=20.59;ReadPosRankSum=1.701;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2318,261,0 chrVII 129080 . A G 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.02;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.511;QD=20.62;ReadPosRankSum=1.699;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2260,258,0 chrVII 129417 . G C 4357.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.7247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4357,495,0 chrVII 130374 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2597,279,0 chrVII 130478 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.04;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2130,240,0 chrVII 131269 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.22;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2966,336,0 chrVII 131292 . G T 2746 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.29;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2779,306,0 chrVII 131485 . A G 2979 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.99;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3012,339,0 chrVII 131489 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.3080;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.31;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2988,342,0 chrVII 131684 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.865;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.949;QD=23.19;ReadPosRankSum=1.711;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3942,447,0 chrVII 132247 . C T 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.259;DP=130;Dels=0.00;FS=2.594;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.028;QD=20.56;ReadPosRankSum=0.663;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2706,262,0 chrVII 132379 . A T 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=3.121;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.499;QD=21.29;ReadPosRankSum=1.703;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2567,288,0 chrVII 132609 . G A 2892 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2925,321,0 chrVII 132676 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2836,321,0 chrVII 132947 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2168,240,0 chrVII 133004 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2489,276,0 chrVII 133213 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.79;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3623,411,0 chrVII 133278 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=6.095;HaplotypeScore=15.1800;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.812;QD=22.73;ReadPosRankSum=2.339;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4023,456,0 chrVII 133650 . A C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.33;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3605,411,0 chrVII 133939 . A G 2355 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2388,279,0 chrVII 134263 . T C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.585;QD=22.25;ReadPosRankSum=1.659;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3237,372,0 chrVII 134584 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.329;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.710;QD=21.44;ReadPosRankSum=1.513;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3388,360,0 chrVII 135167 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3026,345,0 chrVII 135494 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.140;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.7430;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.162;QD=22.13;ReadPosRankSum=0.044;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3496,396,0 chrVII 135724 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2291,258,0 chrVII 136069 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.35;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3620,402,0 chrVII 136222 . T C 6583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;DP=300;Dels=0.00;FS=7.508;HaplotypeScore=11.2074;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.329;QD=21.94;ReadPosRankSum=3.737;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:5,293:300:99:6583,756,0 chrVII 136414 . T A 7324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=328;Dels=0.00;FS=4.155;HaplotypeScore=21.4481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.264;QD=22.33;ReadPosRankSum=1.658;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:1,327:328:99:7324,819,0 chrVII 136555 . G A 5430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.251;DP=252;Dels=0.00;FS=3.369;HaplotypeScore=19.1321;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.705;QD=21.55;ReadPosRankSum=1.718;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5430,584,0 chrVII 136591 . T C 5167.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5167,588,0 chrVII 136861 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.5808;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.023;QD=22.47;ReadPosRankSum=1.692;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3887,441,0 chrVII 137017 . A G 6187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=16.0490;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.810;QD=22.83;ReadPosRankSum=2.412;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:2,264:271:99:6187,708,0 chrVII 137363 . C A 4947.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.8436;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.38;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4947,546,0 chrVII 137665 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.91;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3035,336,0 chrVII 137677 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.24;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3070,333,0 chrVII 137888 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.631;QD=22.49;ReadPosRankSum=1.709;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3418,390,0 chrVII 138568 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.5374;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=11.77;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:2717,312,0 chrVII 138845 . G A 3146 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3179,348,0 chrVII 139341 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.128;QD=22.48;ReadPosRankSum=1.698;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4564,519,0 chrVII 140188 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.54;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1347,147,0 chrVII 140207 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.54;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1450,162,0 chrVII 140286 . A T 636 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=24.8214;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.14;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:669,78,0 chrVII 140536 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.41;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2140,246,0 chrVII 140686 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.8368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3044,327,0 chrVII 141046 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=133;Dels=0.00;FS=6.888;HaplotypeScore=9.7137;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.779;QD=20.86;ReadPosRankSum=2.301;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2807,327,0 chrVII 141082 . A C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=144;Dels=0.00;FS=10.273;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.713;QD=22.08;ReadPosRankSum=2.951;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3212,372,0 chrVII 141144 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.851;QD=21.69;ReadPosRankSum=1.609;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3665,417,0 chrVII 141286 . C G 3014 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.53;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3047,354,0 chrVII 141481 . T A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4028,438,0 chrVII 141776 . T C 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.399;DP=230;Dels=0.00;FS=9.139;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.134;QD=22.98;ReadPosRankSum=3.376;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:4,224:230:99:5285,597,0 chrVII 141849 . G T 4745.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.87;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4745,519,0 chrVII 142031 . A T 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=169;Dels=0.00;FS=2.574;HaplotypeScore=12.8289;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.768;QD=21.47;ReadPosRankSum=2.406;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3629,402,0 chrVII 142176 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.4359;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.06;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3345,366,0 chrVII 142243 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.6384;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.09;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3267,354,0 chrVII 142677 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.91;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2830,312,0 chrVII 142867 . T G 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=165;Dels=0.00;FS=3.024;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.349;QD=22.29;ReadPosRankSum=2.404;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3678,429,0 chrVII 142926 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.887;QD=21.35;ReadPosRankSum=1.704;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2680,300,0 chrVII 142953 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.42;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2890,315,0 chrVII 143054 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.70;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3933,438,0 chrVII 143073 . C T 3876.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.30;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3876,426,0 chrVII 143126 . G T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.43;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3858,426,0 chrVII 143451 . C T 4262.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4262,477,0 chrVII 144114 . C T 1588 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=20.62;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1621,189,0 chrVII 144117 . C A 1536 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=21.33;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1569,180,0 chrVII 144119 . G A 1401 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=18.93;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1434,165,0 chrVII 144124 . T G 1383 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=19.21;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1416,165,0 chrVII 144235 . T C 1372 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.79;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1405,159,0 chrVII 144248 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=19.57;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1501,171,0 chrVII 144298 . T C 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=0.054;QD=19.73;ReadPosRankSum=1.678;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1296,153,0 chrVII 144318 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=20.03;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1355,156,0 chrVII 144323 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=17.24;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1326,156,0 chrVII 144347 . C T 1811 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.12;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1844,213,0 chrVII 144382 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.79;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1912,216,0 chrVII 144440 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.84;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1977,216,0 chrVII 144459 . A G 1860 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2667;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.58;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1893,219,0 chrVII 144469 . A C 1933 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9629;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.95;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1966,222,0 chrVII 144716 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.163;QD=19.42;ReadPosRankSum=1.584;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2324,267,0 chrVII 144719 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.09;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2500,276,0 chrVII 144924 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.35;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3115,351,0 chrVII 144948 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=4.065;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.370;QD=21.71;ReadPosRankSum=1.709;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3344,393,0 chrVII 145035 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.4470;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.02;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2807,306,0 chrVII 145053 . A G 2335 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.48;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2368,273,0 chrVII 145098 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.28;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2097,234,0 chrVII 145491 . G A 296 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.14;SB=-8.000e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:36:329,36,0 chrVII 145492 . T A 296 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.14;SB=-8.100e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:36:329,36,0 chrVII 145758 . G C 1163 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.73;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1196,138,0 chrVII 145800 . T C 1202 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1235,138,0 chrVII 146946 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.61;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2630,294,0 chrVII 147421 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.09;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3325,366,0 chrVII 147477 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=130;Dels=0.00;FS=6.059;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.289;QD=20.85;ReadPosRankSum=2.852;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2744,312,0 chrVII 147510 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.09;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3196,360,0 chrVII 147531 . T G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.753;QD=22.13;ReadPosRankSum=1.657;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3087,351,0 chrVII 147539 . C T 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=1.193;QD=22.90;ReadPosRankSum=-0.757;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3124,333,0 chrVII 148067 . A G 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.476;DP=83;Dels=0.00;FS=2.609;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.818;QD=19.42;ReadPosRankSum=2.916;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1645,189,0 chrVII 148118 . T C 2177 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.77;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2210,261,0 chrVII 148152 . A G 2306 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.61;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2339,267,0 chrVII 148376 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=2.799;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.366;QD=23.59;ReadPosRankSum=2.417;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3585,405,0 chrVII 148595 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=5.441;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.237;QD=18.07;ReadPosRankSum=1.707;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2581,306,0 chrVII 148710 . A G 2857 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.7213;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.32;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2890,333,0 chrVII 148767 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.05;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2727,303,0 chrVII 148771 . G T 2509 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.74;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2542,282,0 chrVII 148812 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.03;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2472,276,0 chrVII 148854 . C G 2263 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.97;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2296,261,0 chrVII 148891 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=19.74;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2283,255,0 chrVII 148894 . T C 2121 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=18.13;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2154,252,0 chrVII 148906 . A C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=125;Dels=0.00;FS=3.265;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.239;QD=16.92;ReadPosRankSum=1.704;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2148,249,0 chrVII 148957 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.14;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3255,363,0 chrVII 148993 . G C 3866.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.09;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3866,441,0 chrVII 149107 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.373;QD=20.95;ReadPosRankSum=1.705;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2778,312,0 chrVII 149109 . C G 2673 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.88;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2706,309,0 chrVII 149252 . G C 2426 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.81;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2459,279,0 chrVII 149346 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=22.60;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1276,141,0 chrVII 149387 . A G 1149 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=21.28;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1182,138,0 chrVII 149393 . G A 1079 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.75;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1112,123,0 chrVII 149421 . G A 720 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.82;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:84:753,84,0 chrVII 149605 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.86;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:892,99,0 chrVII 149673 . G A 1873 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1906,210,0 chrVII 150130 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.55;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3415,387,0 chrVII 150234 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=15.64;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1753,192,0 chrVII 150271 . A G 2252 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=20.66;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2285,264,0 chrVII 150302 . T A 3029 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.89;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3062,345,0 chrVII 150329 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=139;Dels=0.00;FS=10.012;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-1.123;QD=21.50;ReadPosRankSum=2.950;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3022,345,0 chrVII 150335 . A C 2907 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.05;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2940,339,0 chrVII 150399 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=108;Dels=0.00;FS=3.027;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.499;QD=20.96;ReadPosRankSum=2.403;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,104:108:99:2297,264,0 chrVII 150444 . G T 2027 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=21.34;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2060,231,0 chrVII 150466 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=20.41;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1992,228,0 chrVII 150477 . T C 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=108;Dels=0.00;FS=6.103;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-2.038;QD=18.44;ReadPosRankSum=2.916;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2025,231,0 chrVII 150487 . A G 1912 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.54;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1945,228,0 chrVII 150517 . A G 2167 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=18.21;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2200,252,0 chrVII 150806 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6263;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.61;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3268,372,0 chrVII 150923 . A G 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=153;Dels=0.00;FS=5.267;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.509;QD=19.48;ReadPosRankSum=3.333;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3014,348,0 chrVII 150933 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.98;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2747,306,0 chrVII 150956 . C A 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.235;QD=17.04;ReadPosRankSum=-1.176;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:2828,309,0 chrVII 150964 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=15.05;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2592,294,0 chrVII 151322 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=19.8479;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.220;QD=21.33;ReadPosRankSum=1.694;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3882,444,0 chrVII 151493 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.247;QD=22.65;ReadPosRankSum=1.640;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3397,396,0 chrVII 151562 . A G 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=3.434;HaplotypeScore=9.2576;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.183;QD=23.40;ReadPosRankSum=1.713;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4306,492,0 chrVII 151622 . G A 4394.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4090;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.28;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4394,474,0 chrVII 151697 . C T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3587,393,0 chrVII 151778 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5728;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.65;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3594,396,0 chrVII 152150 . T C 5046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=222;Dels=0.00;FS=3.007;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.073;QD=22.73;ReadPosRankSum=2.405;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:5046,585,0 chrVII 152342 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.41;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4449,489,0 chrVII 152354 . C T 4502.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.92;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4502,504,0 chrVII 152410 . C A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.83;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4354,480,0 chrVII 152609 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.34;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4482,492,0 chrVII 152750 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=143;Dels=0.00;FS=10.110;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.315;QD=19.80;ReadPosRankSum=2.415;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2865,336,0 chrVII 152788 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.25;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3192,351,0 chrVII 152800 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.69;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3219,354,0 chrVII 152914 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1859;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.98;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3132,342,0 chrVII 152918 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.6086;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.40;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3145,342,0 chrVII 152948 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.43;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2540,276,0 chrVII 153123 . G C 3209 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=20.1415;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.83;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3242,372,0 chrVII 153164 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.66;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2409,267,0 chrVII 153186 . T C 2220 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.82;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2253,264,0 chrVII 153220 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=18.36;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2659,297,0 chrVII 153377 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.07;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3442,390,0 chrVII 153480 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.42;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2647,294,0 chrVII 153481 . T C 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=130;Dels=0.00;FS=5.646;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.508;QD=19.39;ReadPosRankSum=2.946;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2554,297,0 chrVII 153503 . T A 2990 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.48;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3023,330,0 chrVII 153551 . T G 3271.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.24;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3271,375,0 chrVII 153574 . A T 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.522;QD=22.23;ReadPosRankSum=1.713;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4046,459,0 chrVII 153827 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=188;Dels=0.00;FS=7.313;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.520;QD=22.39;ReadPosRankSum=2.317;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,183:188:99:4209,477,0 chrVII 153833 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.95;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4338,471,0 chrVII 153884 . T A 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=191;Dels=0.00;FS=3.516;HaplotypeScore=9.1879;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.170;QD=19.17;ReadPosRankSum=1.714;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3661,408,0 chrVII 153920 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.5282;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.18;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3632,399,0 chrVII 154100 . T C 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.768;QD=23.10;ReadPosRankSum=1.696;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4528,516,0 chrVII 154159 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=3.128;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.454;QD=22.94;ReadPosRankSum=1.714;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4290,492,0 chrVII 154193 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.22;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4318,483,0 chrVII 154299 . T C 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=200;Dels=0.00;FS=17.085;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.278;QD=21.32;ReadPosRankSum=3.213;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:4,195:200:99:4263,477,0 chrVII 154324 . C G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.19;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3715,429,0 chrVII 154339 . G T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.30;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3411,375,0 chrVII 154381 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.73;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2835,312,0 chrVII 154496 . A G 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=110;Dels=0.00;FS=2.576;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.312;QD=18.31;ReadPosRankSum=2.863;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2047,237,0 chrVII 154885 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4706;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.64;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4255,471,0 chrVII 155278 . T A 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.039;QD=24.72;ReadPosRankSum=1.693;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4400,486,0 chrVII 155634 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.5390;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.25;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4390,483,0 chrVII 155674 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.66;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3492,375,0 chrVII 155677 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=19.62;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3355,390,0 chrVII 155883 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=4.943;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.163;QD=20.53;ReadPosRankSum=1.656;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3757,426,0 chrVII 155922 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.82;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2403,267,0 chrVII 156057 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.66;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1645,186,0 chrVII 156097 . C T 806 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=11.8233;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.19;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:96:839,96,0 chrVII 156212 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0045;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.39;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2902,318,0 chrVII 156252 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.1980;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.07;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3389,366,0 chrVII 156654 . A G 2063 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2096,240,0 chrVII 156857 . C G 3097 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3130,360,0 chrVII 156996 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.506;QD=22.76;ReadPosRankSum=1.679;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3037,345,0 chrVII 157262 . T C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=150;Dels=0.00;FS=7.037;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.057;QD=19.79;ReadPosRankSum=2.417;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3002,351,0 chrVII 157340 . A G 4842.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.11;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4842,570,0 chrVII 157782 . T C 2453 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2486,294,0 chrVII 157854 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.52;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3091,336,0 chrVII 157899 . G T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0657;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.85;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3266,366,0 chrVII 157962 . G C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=18.2541;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.31;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,164:170:99:3792,432,0 chrVII 158256 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.0686;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.84;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4324,489,0 chrVII 158428 . G T 3167 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.63;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3200,351,0 chrVII 158457 . C G 3158 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.6574;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.63;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3191,369,0 chrVII 158916 . A T 4171.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;DP=509;Dels=0.00;FS=189.264;HaplotypeScore=314.2076;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;MQRankSum=-4.344;QD=8.19;ReadPosRankSum=6.154;SB=-3.775e+03 GT:AD:DP:GQ:PL 1/1:66,358:509:99:4171,438,0 chrVII 158922 . A T 4053.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.586;DP=523;Dels=0.00;FS=25.895;HaplotypeScore=598.3113;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;MQRankSum=1.437;QD=7.75;ReadPosRankSum=-3.051;SB=-5.056e+03 GT:AD:DP:GQ:PL 1/1:18,501:523:99:4053,390,0 chrVII 158925 . G A 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.561;DP=532;Dels=0.00;FS=86.193;HaplotypeScore=903.0827;MLEAC=1;MLEAF=0.500;MQ=35.10;MQ0=0;MQRankSum=-9.793;QD=0.03;ReadPosRankSum=4.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:428,102:532:45:45,0,2944 chrVII 158928 . A T 1971.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DP=519;Dels=0.00;FS=28.155;HaplotypeScore=1319.8419;MLEAC=1;MLEAF=0.500;MQ=34.73;MQ0=0;MQRankSum=10.814;QD=3.80;ReadPosRankSum=-3.454;SB=-2.545e+03 GT:AD:DP:GQ:PL 0/1:222,294:519:99:2001,0,807 chrVII 158931 . G A 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.641;DP=505;Dels=0.00;FS=53.831;HaplotypeScore=1610.7677;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=0;MQRankSum=-8.881;QD=0.05;ReadPosRankSum=4.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:420,85:505:53:53,0,2455 chrVII 158940 . T A 1058.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;DP=448;Dels=0.00;FS=168.484;HaplotypeScore=1542.2504;MLEAC=1;MLEAF=0.500;MQ=33.90;MQ0=0;MQRankSum=-1.826;QD=2.36;ReadPosRankSum=6.968;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:235,210:448:99:1088,0,575 chrVII 158943 . G A 150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.830;DP=484;Dels=0.00;FS=27.828;HaplotypeScore=1552.7698;MLEAC=1;MLEAF=0.500;MQ=33.63;MQ0=0;MQRankSum=-8.535;QD=0.31;ReadPosRankSum=4.613;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:392,92:484:99:180,0,1527 chrVII 158946 . T C 581.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.373;DP=481;Dels=0.00;FS=104.923;HaplotypeScore=1225.8413;MLEAC=1;MLEAF=0.500;MQ=33.15;MQ0=0;MQRankSum=8.739;QD=1.21;ReadPosRankSum=-1.342;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:239,148:481:99:611,0,1186 chrVII 158952 . T C 767.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.034;DP=498;Dels=0.00;FS=172.892;HaplotypeScore=682.8166;MLEAC=1;MLEAF=0.500;MQ=33.76;MQ0=0;MQRankSum=4.911;QD=1.54;ReadPosRankSum=4.653;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:329,168:498:99:797,0,1114 chrVII 158958 . T C 476.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.773;DP=488;Dels=0.00;FS=20.823;HaplotypeScore=723.1893;MLEAC=1;MLEAF=0.500;MQ=34.14;MQ0=0;MQRankSum=-12.024;QD=0.98;ReadPosRankSum=2.457;SB=-7.850e+02 GT:AD:DP:GQ:PL 0/1:271,127:488:99:506,0,1314 chrVII 158961 . G A 1978.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.516;DP=492;Dels=0.00;FS=35.918;HaplotypeScore=814.2699;MLEAC=1;MLEAF=0.500;MQ=34.56;MQ0=0;MQRankSum=-0.213;QD=4.02;ReadPosRankSum=9.206;SB=-1.056e+03 GT:AD:DP:GQ:PL 0/1:165,326:492:99:2008,0,237 chrVII 158964 . C G,T 1849.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.506;DP=490;Dels=0.00;FS=47.885;HaplotypeScore=290.1707;MLEAC=1,1;MLEAF=0.500,0.500;MQ=34.65;MQ0=0;MQRankSum=3.000;QD=3.77;ReadPosRankSum=4.241;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/2:90,208,192:490:99:1909,525,691,1077,0,1321 chrVII 158967 . G A 2146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.811;DP=490;Dels=0.00;FS=29.257;HaplotypeScore=679.7172;MLEAC=1;MLEAF=0.500;MQ=35.18;MQ0=0;MQRankSum=2.127;QD=4.38;ReadPosRankSum=10.672;SB=-1.172e+03 GT:AD:DP:GQ:PL 0/1:142,346:490:99:2176,0,196 chrVII 158970 . T A 463.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.383;DP=483;Dels=0.00;FS=29.429;HaplotypeScore=497.9763;MLEAC=1;MLEAF=0.500;MQ=35.71;MQ0=0;MQRankSum=-11.039;QD=0.96;ReadPosRankSum=-6.051;SB=-7.760e+02 GT:AD:DP:GQ:PL 0/1:264,123:483:99:493,0,1571 chrVII 158973 . G A 526.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.639;DP=490;Dels=0.00;FS=55.689;HaplotypeScore=420.6085;MLEAC=1;MLEAF=0.500;MQ=36.13;MQ0=0;MQRankSum=-9.938;QD=1.07;ReadPosRankSum=-5.521;SB=-9.940e+02 GT:AD:DP:GQ:PL 0/1:349,141:490:99:556,0,2103 chrVII 159045 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.0258;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=15.10;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:3941,441,0 chrVII 159246 . G C 4143.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.76;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4143,471,0 chrVII 159586 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.77;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2036,222,0 chrVII 159617 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.51;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2187,240,0 chrVII 159705 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.61;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2778,306,0 chrVII 159732 . T A 1550 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.13;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1583,171,0 chrVII 160076 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.02;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1234,141,0 chrVII 160577 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=139;Dels=0.00;FS=5.256;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.123;QD=22.23;ReadPosRankSum=2.935;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3123,348,0 chrVII 160667 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.77;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3168,348,0 chrVII 160700 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2997,336,0 chrVII 160781 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.09;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2247,255,0 chrVII 160952 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.668;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.516;QD=23.15;ReadPosRankSum=1.678;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2996,351,0 chrVII 160998 . C A 3160 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3193,354,0 chrVII 161445 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=128;Dels=0.00;FS=2.877;HaplotypeScore=12.1027;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.133;QD=22.58;ReadPosRankSum=2.411;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2923,333,0 chrVII 161819 . G T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3707,414,0 chrVII 162012 . G A 4696.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.48;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4696,534,0 chrVII 162080 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.59;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4428,486,0 chrVII 162140 . G A 5106.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.53;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5106,573,0 chrVII 162554 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.31;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2911,333,0 chrVII 162614 . A C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=137;Dels=0.00;FS=3.036;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.834;QD=23.04;ReadPosRankSum=2.378;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3189,357,0 chrVII 162781 . T A 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.491;HaplotypeScore=5.0426;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.643;QD=22.00;ReadPosRankSum=1.633;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2343,264,0 chrVII 162848 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.54;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1943,216,0 chrVII 162943 . C T 1503 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.43;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1536,168,0 chrVII 163115 . T C 781 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=18.16;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:814,96,0 chrVII 163245 . A T 947 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=42.4991;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.59;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:980,108,0 chrVII 163256 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.04;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:989,114,0 chrVII 163323 . G A 977 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=13.76;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1010,111,0 chrVII 163324 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=13.50;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1005,111,0 chrVII 163360 . A C 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=6.504;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=-0.957;QD=15.19;ReadPosRankSum=1.687;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1203,141,0 chrVII 163491 . C T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.74;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4329,474,0 chrVII 163558 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=25.18;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4810,528,0 chrVII 163646 . C T 6113.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.88;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6113,672,0 chrVII 163894 . G A 4961.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.9904;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.66;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4961,558,0 chrVII 164066 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.14;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4177,459,0 chrVII 164106 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.41;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4392,480,0 chrVII 164428 . G T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=19.73;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3275,369,0 chrVII 164429 . T A 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=167;Dels=0.00;FS=4.284;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-1.620;QD=19.86;ReadPosRankSum=3.564;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:5,162:167:99:3316,375,0 chrVII 164774 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.74;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2833,321,0 chrVII 164885 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=109;Dels=0.00;FS=7.580;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.208;QD=22.48;ReadPosRankSum=2.404;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,105:109:99:2483,276,0 chrVII 164966 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.48;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2589,297,0 chrVII 164981 . T A 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.081;QD=17.38;ReadPosRankSum=1.597;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2275,255,0 chrVII 164982 . A G 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=127;Dels=0.00;FS=3.795;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.286;QD=17.43;ReadPosRankSum=1.705;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2247,258,0 chrVII 165111 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3587,408,0 chrVII 165175 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.6382;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.92;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3306,393,0 chrVII 165212 . A C 3784.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.66;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3784,435,0 chrVII 165317 . A T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.92;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3690,420,0 chrVII 165523 . C A 2822 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.76;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2855,315,0 chrVII 166555 . G T 2343 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.73;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2376,270,0 chrVII 166575 . A G 2786 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.11;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2819,321,0 chrVII 166667 . C G 2659 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.34;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2692,309,0 chrVII 167076 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=5.555;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-0.467;QD=22.41;ReadPosRankSum=1.702;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2633,303,0 chrVII 167078 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=23.73;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2714,300,0 chrVII 167443 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=23.17;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1678,189,0 chrVII 167578 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=17.73;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1682,189,0 chrVII 167583 . G C 1550 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.03;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1583,183,0 chrVII 167889 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.19;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3966,438,0 chrVII 168178 . G T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.22;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3840,417,0 chrVII 169593 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.55;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3469,390,0 chrVII 169612 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.36;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3645,414,0 chrVII 169843 . C T 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=122;Dels=0.00;FS=4.331;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.136;QD=20.11;ReadPosRankSum=0.341;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2486,257,0 chrVII 170211 . T C 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=223;Dels=0.00;FS=2.987;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.664;QD=21.01;ReadPosRankSum=2.372;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4686,531,0 chrVII 170641 . G A 381 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=10.30;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:45:414,45,0 chrVII 170880 . A C 1443 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1476,168,0 chrVII 171282 . T C 710 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:743,84,0 chrVII 171571 . A T 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.487;QD=24.48;ReadPosRankSum=-1.191;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3167,345,0 chrVII 171909 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.1489;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.85;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3890,435,0 chrVII 171921 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=171;Dels=0.00;FS=6.203;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.036;QD=20.42;ReadPosRankSum=2.421;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:3492,399,0 chrVII 172032 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.04;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3847,432,0 chrVII 172111 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.21;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2943,330,0 chrVII 172132 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.41;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2789,315,0 chrVII 172231 . A T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1136;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.77;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3871,429,0 chrVII 172255 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=3.549;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.691;QD=21.05;ReadPosRankSum=1.711;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3452,387,0 chrVII 172407 . A T 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.602;QD=23.86;ReadPosRankSum=1.707;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3293,372,0 chrVII 172662 . G C 2993 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.02;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3026,345,0 chrVII 172682 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=4.661;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.074;QD=23.30;ReadPosRankSum=1.703;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2782,321,0 chrVII 172762 . T C 2417 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2450,288,0 chrVII 172879 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.69;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2874,324,0 chrVII 172986 . T C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.316;QD=23.02;ReadPosRankSum=1.677;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2911,330,0 chrVII 173065 . T A 2306 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.83;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2339,252,0 chrVII 173089 . G C 2140 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=20.58;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2173,246,0 chrVII 173120 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=17.31;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2006,219,0 chrVII 173129 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=13.99;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1684,192,0 chrVII 173276 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.01;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2886,321,0 chrVII 173486 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=7.216;HaplotypeScore=5.7196;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-2.204;QD=20.98;ReadPosRankSum=2.404;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3378,381,0 chrVII 173498 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.30;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3429,390,0 chrVII 173856 . T A 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.128;QD=22.23;ReadPosRankSum=1.686;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3312,378,0 chrVII 174016 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.0682;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3673,402,0 chrVII 174098 . C G 4559.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.38;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4559,516,0 chrVII 174175 . C T 5715.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=19.6856;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.42;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5715,642,0 chrVII 174324 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.85;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4895,552,0 chrVII 174386 . A G 5089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.631;QD=21.56;ReadPosRankSum=1.703;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5089,579,0 chrVII 174410 . G T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.06;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4368,480,0 chrVII 174507 . A G 4433.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.3293;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.50;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4433,504,0 chrVII 174710 . G A 5284.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.7447;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.48;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5284,582,0 chrVII 175704 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.58;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3185,360,0 chrVII 175741 . C T 4666.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.93;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4666,513,0 chrVII 175787 . A T 4901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=211;Dels=0.00;FS=3.949;HaplotypeScore=18.4303;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.287;QD=23.23;ReadPosRankSum=1.699;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4901,561,0 chrVII 175866 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=21.17;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3018,333,0 chrVII 175871 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.739;QD=20.46;ReadPosRankSum=1.708;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2959,336,0 chrVII 175893 . C G 2591 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.51;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2624,294,0 chrVII 175905 . T C 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.708;HaplotypeScore=5.4725;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-1.352;QD=17.50;ReadPosRankSum=1.665;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2746,321,0 chrVII 176415 . A G 3885.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.26;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3885,447,0 chrVII 176760 . T C 3810.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.90;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3810,441,0 chrVII 176805 . C G 3064 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.15;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3097,354,0 chrVII 176822 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.88;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3165,351,0 chrVII 176963 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.01;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2938,318,0 chrVII 177012 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.15;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2907,324,0 chrVII 177085 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.81;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3044,330,0 chrVII 177135 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.04;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2659,303,0 chrVII 177165 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.15;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2689,294,0 chrVII 177479 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.50;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3093,345,0 chrVII 177524 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=162;Dels=0.00;FS=3.435;HaplotypeScore=15.4383;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.011;QD=21.39;ReadPosRankSum=1.668;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3465,396,0 chrVII 177613 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=22.40;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2945,327,0 chrVII 177619 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.21;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2645,297,0 chrVII 177632 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.16;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2428,267,0 chrVII 177936 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=136;Dels=0.00;FS=6.115;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.756;QD=18.44;ReadPosRankSum=2.904;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2541,291,0 chrVII 178052 . G T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.39;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3462,384,0 chrVII 178133 . G A 4697.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.12;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4697,516,0 chrVII 178179 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.24;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3742,417,0 chrVII 178362 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=4.387;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.406;QD=21.88;ReadPosRankSum=1.711;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3567,405,0 chrVII 178402 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.34;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3671,399,0 chrVII 178406 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.730;QD=22.24;ReadPosRankSum=1.710;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3536,399,0 chrVII 178509 . T C 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.555;QD=20.57;ReadPosRankSum=1.697;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2069,237,0 chrVII 178593 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.04;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2959,318,0 chrVII 178856 . A G 2661 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.55;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2694,306,0 chrVII 178893 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.99;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2816,309,0 chrVII 179733 . T A 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.853;QD=23.13;ReadPosRankSum=1.705;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3040,336,0 chrVII 179772 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.70;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2931,321,0 chrVII 179784 . T C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.101;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.968;QD=19.68;ReadPosRankSum=1.660;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2906,336,0 chrVII 180027 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=169;Dels=0.00;FS=3.890;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.933;QD=20.16;ReadPosRankSum=1.712;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3407,399,0 chrVII 180039 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.39;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3379,369,0 chrVII 180195 . A C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.563;QD=21.55;ReadPosRankSum=1.708;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3136,351,0 chrVII 180276 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0057;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.71;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2807,315,0 chrVII 180506 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.74;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3894,429,0 chrVII 180580 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.76;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4120,474,0 chrVII 180628 . A G 5628.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=7.3394;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.16;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5628,636,0 chrVII 180656 . G A 6267.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=13.8959;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.96;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6267,699,0 chrVII 180864 . C T 5561.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.47;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5561,618,0 chrVII 180873 . A G 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=256;Dels=0.00;FS=8.432;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.261;QD=20.07;ReadPosRankSum=3.427;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:4,251:256:99:5138,597,0 chrVII 181036 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.322;QD=21.41;ReadPosRankSum=1.711;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3576,417,0 chrVII 181069 . C G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.7073;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=18.94;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:3410,402,0 chrVII 181138 . G A 4743.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.3035;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.83;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4743,534,0 chrVII 181732 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3120,342,0 chrVII 181935 . T A 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.166;QD=22.57;ReadPosRankSum=2.307;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3499,390,0 chrVII 182122 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=184;Dels=0.00;FS=2.563;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-2.324;QD=22.54;ReadPosRankSum=2.962;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:4148,471,0 chrVII 182242 . T G 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.00;FS=6.286;HaplotypeScore=8.1725;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.942;QD=23.70;ReadPosRankSum=2.417;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3579,402,0 chrVII 182324 . A T 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=3.733;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.011;QD=20.90;ReadPosRankSum=1.711;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3407,390,0 chrVII 182365 . G T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.70;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3829,426,0 chrVII 182388 . C A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.5048;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.26;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3745,402,0 chrVII 182454 . A C 3520.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.11;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3520,408,0 chrVII 182485 . T G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=3.297;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.142;QD=23.69;ReadPosRankSum=1.708;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3387,390,0 chrVII 182551 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.8392;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.31;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4196,474,0 chrVII 182657 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.58;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3263,360,0 chrVII 182781 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=143;Dels=0.00;FS=3.005;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.435;QD=21.29;ReadPosRankSum=2.415;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3077,348,0 chrVII 182995 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2458,270,0 chrVII 183038 . T C 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=4.040;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.700;QD=22.80;ReadPosRankSum=1.700;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2518,291,0 chrVII 183128 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.48;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2663,303,0 chrVII 183218 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3465,399,0 chrVII 183325 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.18;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3338,387,0 chrVII 183337 . A T 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=2.892;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.157;QD=23.12;ReadPosRankSum=2.390;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3791,405,0 chrVII 183346 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.199;QD=20.38;ReadPosRankSum=1.692;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3566,411,0 chrVII 183481 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.60;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3517,399,0 chrVII 183709 . T C 5320.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5320,606,0 chrVII 183823 . A G 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.647;QD=22.68;ReadPosRankSum=1.697;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4513,516,0 chrVII 183996 . A G 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.026;QD=21.43;ReadPosRankSum=1.700;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2347,264,0 chrVII 184018 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.02;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2475,282,0 chrVII 184067 . A G 2449 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.0201;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=1.155;QD=19.44;ReadPosRankSum=-0.027;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2482,282,0 chrVII 184072 . T C 2408 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=19.58;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2441,279,0 chrVII 184074 . T C 2450 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=5.654;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=1.649;QD=19.60;ReadPosRankSum=1.704;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2483,279,0 chrVII 184213 . G T 1793 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.60;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1826,204,0 chrVII 184357 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.51;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2292,255,0 chrVII 184367 . A T 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=111;Dels=0.00;FS=3.293;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.514;QD=21.94;ReadPosRankSum=1.701;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2468,273,0 chrVII 184422 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.65;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2592,282,0 chrVII 184438 . T C 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.385;QD=21.43;ReadPosRankSum=1.700;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2369,270,0 chrVII 184447 . A G 2226 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.40;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2259,258,0 chrVII 184464 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.41;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2341,252,0 chrVII 184536 . T A 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.078;QD=21.30;ReadPosRankSum=1.699;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2291,261,0 chrVII 184572 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.24;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2624,291,0 chrVII 184717 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.80;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1744,195,0 chrVII 184718 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=18.71;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1773,195,0 chrVII 184747 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=18.54;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2536,288,0 chrVII 184967 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.71;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2622,291,0 chrVII 185240 . T G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.0887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.136;QD=19.93;ReadPosRankSum=1.710;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3182,363,0 chrVII 185280 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=179;Dels=0.00;FS=2.919;HaplotypeScore=12.6042;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=2.269;QD=21.46;ReadPosRankSum=2.422;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3842,441,0 chrVII 185342 . T C 3204 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=22.56;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3237,366,0 chrVII 185383 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=22.86;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3337,387,0 chrVII 185521 . C A 2159 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=20.76;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2192,240,0 chrVII 185620 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=17.17;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1424,162,0 chrVII 185649 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=19.19;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1242,138,0 chrVII 185705 . A T 1313 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=21.88;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1346,153,0 chrVII 185791 . T G 384 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=23.9849;MLEAC=2;MLEAF=1.00;MQ=34.41;MQ0=0;QD=11.29;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:45:417,45,0 chrVII 185805 . A G 125.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=6.628;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;MQRankSum=-1.583;QD=5.44;ReadPosRankSum=1.583;SB=-1.071e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:18:158,18,0 chrVII 185806 . G A 128.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=5.82;SB=-1.111e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:18:161,18,0 chrVII 185807 . G A 130.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=5.92;SB=-1.091e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:18:163,18,0 chrVII 185831 . A C 327 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=8.61;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:42:360,42,0 chrVII 185843 . T C 423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=-1.379;QD=8.63;ReadPosRankSum=1.662;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:54:456,54,0 chrVII 185846 . G A 503 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=9.86;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:60:536,60,0 chrVII 185982 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=20.21;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1791,198,0 chrVII 186151 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.00;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3542,387,0 chrVII 186237 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.04;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3617,399,0 chrVII 186330 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.98;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3998,438,0 chrVII 186349 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.062;DP=187;Dels=0.00;FS=14.650;HaplotypeScore=8.9981;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.303;QD=20.99;ReadPosRankSum=4.157;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:6,176:187:99:3926,450,0 chrVII 186701 . C T 5397.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.4205;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.42;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,246:252:99:5397,594,0 chrVII 186792 . C T 6001.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.3984;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.91;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6001,666,0 chrVII 187003 . T C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.96;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3712,417,0 chrVII 187006 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.58;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3726,405,0 chrVII 187054 . T G 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=116;Dels=0.00;FS=3.590;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.392;QD=19.41;ReadPosRankSum=1.701;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,111:116:99:2285,264,0 chrVII 187174 . A G 2727 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=23.51;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2760,315,0 chrVII 187222 . G C 1982 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.4535;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.43;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,98:102:99:2015,240,0 chrVII 187246 . A G 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.885;QD=19.82;ReadPosRankSum=1.694;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1817,210,0 chrVII 187348 . G T 1815 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=18.91;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1848,201,0 chrVII 187353 . T C 1543 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=16.07;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1576,186,0 chrVII 187354 . A G 1546 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;MQRankSum=-1.295;QD=16.27;ReadPosRankSum=1.696;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1579,186,0 chrVII 187373 . C G 1489 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=15.19;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1522,174,0 chrVII 187382 . C A 1531 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=15.01;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1564,174,0 chrVII 187519 . T A 2634 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.90;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2667,303,0 chrVII 187556 . C G 2623 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.21;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2656,297,0 chrVII 187629 . A T 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=3.712;HaplotypeScore=11.6269;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.267;QD=21.39;ReadPosRankSum=1.629;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2899,324,0 chrVII 187678 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.75;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3618,411,0 chrVII 187718 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.85;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3771,420,0 chrVII 187952 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=163;Dels=0.00;FS=3.027;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.387;QD=22.39;ReadPosRankSum=2.389;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3650,414,0 chrVII 188069 . T C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.222;HaplotypeScore=8.9978;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.292;QD=22.35;ReadPosRankSum=1.705;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2871,330,0 chrVII 188201 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3648,420,0 chrVII 188242 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=141;Dels=0.00;FS=5.259;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.031;QD=21.32;ReadPosRankSum=3.297;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:3039,351,0 chrVII 188297 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.5727;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.91;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3712,420,0 chrVII 188654 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=186;Dels=0.00;FS=3.028;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.082;QD=21.08;ReadPosRankSum=2.370;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3920,459,0 chrVII 188780 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.66;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3205,354,0 chrVII 188827 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=156;Dels=0.00;FS=6.162;HaplotypeScore=11.1132;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.772;QD=22.40;ReadPosRankSum=2.387;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3495,399,0 chrVII 188873 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.92;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3828,426,0 chrVII 188953 . T G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.166;QD=21.88;ReadPosRankSum=1.689;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3544,417,0 chrVII 189380 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9152;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.66;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4519,495,0 chrVII 189602 . G A 4646.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.21;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4646,510,0 chrVII 189613 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=207;Dels=0.00;FS=3.074;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.262;QD=19.99;ReadPosRankSum=1.698;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4138,468,0 chrVII 189647 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=6.257;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.645;QD=18.35;ReadPosRankSum=2.406;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3134,360,0 chrVII 189910 . T G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.77;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3353,384,0 chrVII 190037 . C G 3323.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.08;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3323,378,0 chrVII 190333 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.25;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3758,411,0 chrVII 190505 . C T 5175.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.80;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5175,573,0 chrVII 190561 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=209;Dels=0.00;FS=7.154;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.194;QD=21.32;ReadPosRankSum=2.367;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4455,510,0 chrVII 190568 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.126;QD=21.97;ReadPosRankSum=1.642;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4219,483,0 chrVII 190661 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.46;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3583,387,0 chrVII 190664 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.14;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3388,381,0 chrVII 191102 . A G 7517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=323;Dels=0.00;FS=3.730;HaplotypeScore=22.8605;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.139;QD=23.27;ReadPosRankSum=1.710;SB=-3.352e+03 GT:AD:DP:GQ:PL 1/1:1,320:323:99:7517,846,0 chrVII 191348 . A G 9590.01 filter AC=2;AF=1.00;AN=2;DP=454;Dels=0.00;FS=0.000;HaplotypeScore=18.0143;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.12;SB=-4.664e+03 GT:AD:DP:GQ:PL 1/1:0,451:454:99:9590,1112,0 chrVII 191489 . A G 7123.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=12.5188;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.01;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,339:339:99:7123,830,0 chrVII 191625 . C T 5064.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.1134;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.61;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5064,549,0 chrVII 191653 . T C 4319.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.17;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4319,492,0 chrVII 191779 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0411;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.78;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2888,336,0 chrVII 191788 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=6.760;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.860;QD=18.92;ReadPosRankSum=1.685;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2833,321,0 chrVII 191826 . A T 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.479;DP=100;Dels=0.00;FS=2.317;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.822;QD=17.15;ReadPosRankSum=3.638;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:5,95:100:99:1748,198,0 chrVII 191886 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.29;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1587,177,0 chrVII 192146 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.61;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3771,429,0 chrVII 192234 . C T 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.038;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=3.073;QD=10.43;ReadPosRankSum=7.151;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:21,191:212:99:2244,228,0 chrVII 192254 . T C 2770 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=13.38;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:2803,327,0 chrVII 192314 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=15.72;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:3648,414,0 chrVII 192323 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=225;Dels=0.00;FS=10.143;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-1.632;QD=15.37;ReadPosRankSum=2.968;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:3,218:225:99:3459,393,0 chrVII 192332 . G C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=15.31;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:3445,396,0 chrVII 192480 . T G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=186;Dels=0.00;FS=10.387;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.848;QD=21.19;ReadPosRankSum=2.396;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:3942,456,0 chrVII 192572 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.174;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.449;QD=22.21;ReadPosRankSum=1.668;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3598,417,0 chrVII 192641 . A G 3181 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.05;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3214,375,0 chrVII 192701 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.82;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2869,327,0 chrVII 192719 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=18.15;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2393,261,0 chrVII 192722 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.89;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2323,255,0 chrVII 192839 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.40;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3757,417,0 chrVII 193017 . C G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.07;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3357,393,0 chrVII 193025 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.15;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3136,345,0 chrVII 193366 . A G 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.390;QD=17.71;ReadPosRankSum=2.390;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2211,258,0 chrVII 193367 . G T 2366 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.08;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2399,270,0 chrVII 193460 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.80;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1875,210,0 chrVII 193477 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.26;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1766,192,0 chrVII 193504 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.84;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1656,180,0 chrVII 193537 . T A 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=0.318;QD=19.09;ReadPosRankSum=1.697;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1904,219,0 chrVII 193564 . A C 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.279;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.242;QD=20.68;ReadPosRankSum=1.697;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2101,240,0 chrVII 193573 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.94;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2227,243,0 chrVII 193598 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.03;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1968,219,0 chrVII 193852 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=142;Dels=0.00;FS=2.823;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.528;QD=22.30;ReadPosRankSum=2.415;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3199,360,0 chrVII 194502 . T A 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.931;QD=22.43;ReadPosRankSum=1.706;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3038,327,0 chrVII 194682 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.6271;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.42;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3981,435,0 chrVII 195096 . T G 2625 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.69;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2658,303,0 chrVII 195692 . G A 4876.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.89;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4876,528,0 chrVII 195843 . A G 5602.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.06;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5602,645,0 chrVII 195912 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.54;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3837,438,0 chrVII 195921 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=191;Dels=0.00;FS=15.311;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.105;QD=19.12;ReadPosRankSum=3.268;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:3651,414,0 chrVII 196141 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.2134;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.87;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3152,360,0 chrVII 196451 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.18;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2917,327,0 chrVII 196474 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=3.257;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.887;QD=22.20;ReadPosRankSum=1.705;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2852,327,0 chrVII 196547 . A G 2952 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2985,339,0 chrVII 196614 . T C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=135;Dels=0.00;FS=5.932;HaplotypeScore=27.1813;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.857;QD=18.30;ReadPosRankSum=2.948;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:2504,294,0 chrVII 196688 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=23.76;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3421,375,0 chrVII 196715 . T C 3186 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=22.76;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3219,369,0 chrVII 196822 . T C 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=177;Dels=0.00;FS=2.974;HaplotypeScore=10.4810;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-1.089;QD=23.24;ReadPosRankSum=2.422;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4114,474,0 chrVII 196876 . T C 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=194;Dels=0.00;FS=3.003;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=1.759;QD=18.81;ReadPosRankSum=2.398;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:3649,417,0 chrVII 196911 . A C 2241 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=125.1177;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=14.09;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2274,267,0 chrVII 196928 . G C 1898 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=140.6969;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=11.94;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1931,222,0 chrVII 196930 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=138.7102;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=12.33;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1969,219,0 chrVII 196947 . C T 2242 SnpCluster AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=0;QD=11.68;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2275,249,0 chrVII 196954 . T A 2275 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=192;Dels=0.00;FS=2.809;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;MQRankSum=-2.334;QD=11.85;ReadPosRankSum=2.411;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:2308,255,0 chrVII 196956 . T G 2190 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;QD=11.29;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:2223,261,0 chrVII 196981 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=11.03;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:2514,282,0 chrVII 196994 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.4290;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=12.55;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:2832,318,0 chrVII 197175 . T C 6139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=274;Dels=0.00;FS=3.590;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-0.866;QD=22.41;ReadPosRankSum=1.681;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:1,271:274:99:6139,716,0 chrVII 197229 . C G 5019.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.1715;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.91;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,235:240:99:5019,585,0 chrVII 197247 . G A 4768.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.38;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4768,519,0 chrVII 197388 . C G 4030.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.3788;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.10;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4030,453,0 chrVII 197802 . G C 2933 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.02;FS=0.000;HaplotypeScore=12.3065;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.82;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2966,342,0 chrVII 197942 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.78;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3172,351,0 chrVII 197989 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.06;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3031,330,0 chrVII 198003 . T A 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.01;FS=4.082;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.217;QD=18.05;ReadPosRankSum=1.651;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2361,258,0 chrVII 198298 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.0863;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.056;QD=21.68;ReadPosRankSum=-1.507;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3685,420,0 chrVII 198476 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=213;Dels=0.00;FS=9.146;HaplotypeScore=18.5814;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=2.201;QD=19.27;ReadPosRankSum=3.320;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:4,208:213:99:4105,465,0 chrVII 198520 . A C 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.01;FS=3.416;HaplotypeScore=7.6918;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.356;QD=19.06;ReadPosRankSum=1.624;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4307,492,0 chrVII 198548 . C T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.47;SB=-3.178e+03 GT:AD:DP:GQ:PL 1/1:0,253:259:99:5043,570,0 chrVII 198759 . T C 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=219;Dels=0.00;FS=9.973;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.484;QD=21.44;ReadPosRankSum=2.958;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:3,213:219:99:4696,531,0 chrVII 198896 . T G 5493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=248;Dels=0.00;FS=13.596;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.964;QD=22.15;ReadPosRankSum=2.956;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:3,245:248:99:5493,627,0 chrVII 199131 . C A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.5499;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.35;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3800,438,0 chrVII 199690 . A G 4281.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.19;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4281,492,0 chrVII 199894 . A G 5625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=265;Dels=0.00;FS=4.657;HaplotypeScore=9.3699;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.139;QD=21.23;ReadPosRankSum=1.706;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,262:265:99:5625,630,0 chrVII 199899 . C T 5376.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=7.5895;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.68;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5376,597,0 chrVII 200351 . C T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.7473;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.82;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4336,474,0 chrVII 200448 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3952,429,0 chrVII 200728 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1535;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=19.56;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3182,360,0 chrVII 200782 . T C 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=177;Dels=0.00;FS=5.515;HaplotypeScore=18.6948;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.126;QD=20.97;ReadPosRankSum=2.937;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:3712,420,0 chrVII 200845 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.9962;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.19;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3988,450,0 chrVII 200875 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.71;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3414,390,0 chrVII 201093 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.27;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3786,417,0 chrVII 201352 . A G 3198 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3231,378,0 chrVII 202082 . A T 4550.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.14;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4550,498,0 chrVII 202475 . A G 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=3.867;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.905;QD=23.69;ReadPosRankSum=1.706;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3208,363,0 chrVII 203987 . A T 673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=3.757;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.091;QD=17.71;ReadPosRankSum=1.550;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:81:706,81,0 chrVII 204226 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.75;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2508,276,0 chrVII 204265 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.48;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2348,258,0 chrVII 204321 . A G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.358;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.390;QD=24.24;ReadPosRankSum=1.694;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2239,252,0 chrVII 204569 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=104;Dels=0.00;FS=6.596;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.784;QD=21.80;ReadPosRankSum=2.401;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:2,100:104:99:2300,264,0 chrVII 205830 . T G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.339;QD=22.41;ReadPosRankSum=1.696;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2207,255,0 chrVII 206526 . T C 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=83;Dels=0.00;FS=2.381;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.373;QD=18.58;ReadPosRankSum=3.723;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:5,78:83:99:1575,180,0 chrVII 206716 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=146;Dels=0.00;FS=2.923;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.153;QD=22.60;ReadPosRankSum=2.365;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3299,384,0 chrVII 207422 . G C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.848;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.7289;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.708;QD=22.27;ReadPosRankSum=-0.921;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3173,349,0 chrVII 207551 . T C 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=210;Dels=0.00;FS=3.021;HaplotypeScore=14.3974;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.263;QD=23.11;ReadPosRankSum=2.403;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4854,549,0 chrVII 207883 . A T 5691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=3.699;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.538;QD=24.53;ReadPosRankSum=1.657;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5691,627,0 chrVII 208005 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.80;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4264,480,0 chrVII 208034 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.87;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4461,501,0 chrVII 208622 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.32;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2216,255,0 chrVII 208835 . G T 1542 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.56;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1575,180,0 chrVII 208927 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=19.58;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2148,249,0 chrVII 208928 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=20.41;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2196,246,0 chrVII 208955 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=18.27;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2024,228,0 chrVII 208986 . G A 1707 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=8.9406;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=17.78;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1740,195,0 chrVII 209066 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0675;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.70;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2734,315,0 chrVII 209599 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.19;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3021,345,0 chrVII 209671 . G T 3076 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.84;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3109,345,0 chrVII 209977 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.53;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1398,150,0 chrVII 210093 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.65;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1251,141,0 chrVII 210122 . A T 916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=58;Dels=0.00;FS=4.847;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.239;QD=15.79;ReadPosRankSum=1.673;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:949,105,0 chrVII 210523 . A G 2637 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2670,306,0 chrVII 210785 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=175;Dels=0.00;FS=6.023;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.603;QD=20.67;ReadPosRankSum=2.822;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3617,411,0 chrVII 210946 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.681;DP=179;Dels=0.00;FS=15.676;HaplotypeScore=15.6043;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=2.359;QD=23.27;ReadPosRankSum=3.777;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:5,174:179:99:4165,477,0 chrVII 211015 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3859,441,0 chrVII 211576 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.13;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2439,264,0 chrVII 212532 . A C 5469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.8069;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.537;QD=21.79;ReadPosRankSum=1.718;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,248:251:99:5469,621,0 chrVII 212679 . A T 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=156;Dels=0.00;FS=2.785;HaplotypeScore=10.7350;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.276;QD=21.89;ReadPosRankSum=2.355;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3415,375,0 chrVII 213175 . G A 5038.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.19;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5038,540,0 chrVII 213411 . C A 5104.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.30;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5104,561,0 chrVII 213927 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=23.06;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1601,183,0 chrVII 213964 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.20;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1387,150,0 chrVII 214440 . G A 4488.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.38;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4488,492,0 chrVII 214568 . A C 4446.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.34;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4446,513,0 chrVII 214758 . C G 5554.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.20;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,259:262:99:5554,651,0 chrVII 214822 . C T 6365.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.1289;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.02;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6365,699,0 chrVII 214914 . G A 5266.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.51;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5266,576,0 chrVII 214926 . C T 5250.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.15;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5250,591,0 chrVII 215210 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.18;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2884,324,0 chrVII 215394 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.17;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2828,318,0 chrVII 215404 . A G 2624 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.88;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2657,306,0 chrVII 215575 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.584;QD=20.79;ReadPosRankSum=1.711;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3389,393,0 chrVII 215826 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.90;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3370,384,0 chrVII 215900 . T C 3199 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.843;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=0.060;QD=18.60;ReadPosRankSum=1.672;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3232,363,0 chrVII 215902 . T C 3077 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=3.882;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.098;QD=17.38;ReadPosRankSum=1.634;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3110,366,0 chrVII 215909 . C T 3294.01 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.93;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3294,363,0 chrVII 215950 . C A 2747 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.31;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2780,306,0 chrVII 216044 . C G 2236 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.61;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2269,267,0 chrVII 216083 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.60;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2906,318,0 chrVII 216207 . A G 2462 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.98;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2495,285,0 chrVII 216267 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=120;Dels=0.00;FS=10.057;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.630;QD=21.90;ReadPosRankSum=2.942;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2661,306,0 chrVII 216479 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.102;QD=22.95;ReadPosRankSum=1.665;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3535,402,0 chrVII 216869 . A G 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.389;QD=22.43;ReadPosRankSum=1.696;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4306,486,0 chrVII 217019 . A G 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=193;Dels=0.00;FS=4.154;HaplotypeScore=19.7170;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.565;QD=22.80;ReadPosRankSum=1.714;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:4400,498,0 chrVII 217374 . T C 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=207;Dels=0.00;FS=2.962;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.734;QD=23.03;ReadPosRankSum=2.426;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4768,543,0 chrVII 217399 . T A 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=202;Dels=0.00;FS=2.960;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-1.210;QD=21.13;ReadPosRankSum=2.377;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4268,480,0 chrVII 217417 . G C 3740.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.2879;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.79;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3740,420,0 chrVII 217456 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=166;Dels=0.00;FS=2.864;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.618;QD=15.93;ReadPosRankSum=2.390;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:2677,306,0 chrVII 217461 . A G 2648 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4036;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=15.86;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2681,306,0 chrVII 217505 . T C 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=159;Dels=0.00;FS=6.028;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.153;QD=18.84;ReadPosRankSum=2.816;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3029,351,0 chrVII 217800 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.06;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2923,333,0 chrVII 217847 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=4.078;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.466;QD=22.53;ReadPosRankSum=1.710;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3560,417,0 chrVII 218097 . A T 2880 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2913,318,0 chrVII 218139 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3168,351,0 chrVII 218628 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=119;Dels=0.00;FS=2.922;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.969;QD=22.19;ReadPosRankSum=2.408;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2674,306,0 chrVII 218669 . A G 3075 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.28;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3108,363,0 chrVII 218745 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0310;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.92;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3278,366,0 chrVII 218778 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.2259;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.44;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3344,369,0 chrVII 218858 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.47;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3416,387,0 chrVII 218900 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.3840;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.03;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3708,411,0 chrVII 218949 . C A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.94;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3378,375,0 chrVII 218961 . T G 2937 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.98;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2970,336,0 chrVII 219068 . A C 2970 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.37;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3003,336,0 chrVII 219119 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7687;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.165;QD=23.04;ReadPosRankSum=1.691;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3870,441,0 chrVII 219263 . A G 3199 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3232,384,0 chrVII 219322 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.990;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.543;QD=22.20;ReadPosRankSum=2.228;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2497,285,0 chrVII 219563 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=141;Dels=0.00;FS=2.760;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.571;QD=22.36;ReadPosRankSum=2.415;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3186,372,0 chrVII 219626 . T C 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.754;QD=21.86;ReadPosRankSum=1.693;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3870,441,0 chrVII 219641 . A G 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=188;Dels=0.00;FS=6.620;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.404;QD=20.06;ReadPosRankSum=2.410;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3772,441,0 chrVII 219733 . T C 2863 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=22.37;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2896,327,0 chrVII 219776 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=20.61;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3166,345,0 chrVII 219779 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-0.044;QD=19.90;ReadPosRankSum=1.688;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3158,360,0 chrVII 219792 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=166;Dels=0.00;FS=12.138;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=0.376;QD=20.12;ReadPosRankSum=2.921;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3340,378,0 chrVII 219956 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=5.504;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.757;QD=22.35;ReadPosRankSum=1.692;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3889,447,0 chrVII 219971 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.73;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3637,417,0 chrVII 220121 . C T 4559.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.91;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4559,507,0 chrVII 220229 . A G 2940 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.7949;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.94;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2973,339,0 chrVII 220380 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2746,312,0 chrVII 220412 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2870,333,0 chrVII 220475 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=2.745;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.129;QD=23.31;ReadPosRankSum=2.400;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4662,522,0 chrVII 220519 . G A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9654;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.27;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4514,495,0 chrVII 220602 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.19;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3418,375,0 chrVII 220673 . A G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.532;QD=22.12;ReadPosRankSum=1.677;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4225,483,0 chrVII 220697 . C A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.30;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3898,423,0 chrVII 220747 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.42;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2817,309,0 chrVII 220760 . G C 2850 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.65;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2883,333,0 chrVII 220877 . T A 2347 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.41;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2380,258,0 chrVII 220928 . C A 2109 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.71;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2142,243,0 chrVII 221031 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.76;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3778,432,0 chrVII 221066 . C A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.53;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3729,411,0 chrVII 221356 . A G 4857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.170;QD=20.67;ReadPosRankSum=1.658;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:4857,558,0 chrVII 221407 . A G 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.3586;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.180;QD=20.86;ReadPosRankSum=2.408;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:2,236:239:99:4985,567,0 chrVII 221473 . G T 4711.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=23.6604;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.81;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4711,534,0 chrVII 221698 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.388;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.168;QD=22.96;ReadPosRankSum=1.708;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3329,381,0 chrVII 221962 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.54;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3719,411,0 chrVII 221994 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.0092;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.54;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3708,423,0 chrVII 222043 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-0.531;QD=17.22;ReadPosRankSum=2.425;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:2,199:201:99:3462,402,0 chrVII 222046 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=17.86;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3554,390,0 chrVII 222059 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=16.60;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3270,390,0 chrVII 222140 . G T 2549 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.72;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2582,282,0 chrVII 222171 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.4292;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.18;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2606,291,0 chrVII 222215 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.81;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2605,288,0 chrVII 222244 . G A 2220 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.42;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2253,249,0 chrVII 222265 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.3275;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.21;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2276,261,0 chrVII 222418 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.03;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3460,390,0 chrVII 222592 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=163;Dels=0.00;FS=3.680;HaplotypeScore=16.6801;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.603;QD=22.12;ReadPosRankSum=1.689;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3606,417,0 chrVII 222658 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.314;QD=22.43;ReadPosRankSum=1.686;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3365,387,0 chrVII 222691 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=6.638;HaplotypeScore=9.0813;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.954;QD=22.04;ReadPosRankSum=2.414;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3140,357,0 chrVII 223151 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.529;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.388;QD=23.18;ReadPosRankSum=1.709;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3524,399,0 chrVII 223237 . A G 2713 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=9.1613;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.24;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2746,312,0 chrVII 223273 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.92;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2949,333,0 chrVII 223507 . G A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.03;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4230,462,0 chrVII 223550 . T C 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.4847;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.730;QD=21.80;ReadPosRankSum=1.688;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5123,582,0 chrVII 223702 . A T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.2548;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=23.59;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4482,501,0 chrVII 223742 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.2659;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=21.03;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:4333,477,0 chrVII 223756 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.8104;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=19.58;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4034,444,0 chrVII 223768 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.9519;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.74;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4087,462,0 chrVII 223861 . C T 4011.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=10.4560;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.19;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4011,441,0 chrVII 223942 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=18.78;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2963,327,0 chrVII 223948 . A G 2954 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.43;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2987,342,0 chrVII 223963 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.72;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3606,396,0 chrVII 224372 . G A 5954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=269;Dels=0.00;FS=6.746;HaplotypeScore=17.8423;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.889;QD=22.13;ReadPosRankSum=1.565;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:2,267:269:99:5954,651,0 chrVII 224467 . G C 4522.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.74;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4522,525,0 chrVII 224828 . C T 4429.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.640;DP=466;Dels=0.00;FS=67.946;HaplotypeScore=100.3129;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;MQRankSum=-5.274;QD=9.50;ReadPosRankSum=-6.602;SB=-3.829e+03 GT:AD:DP:GQ:PL 1/1:41,424:466:99:4429,483,0 chrVII 224839 . A G 232.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.665;DP=498;Dels=0.00;FS=7.694;HaplotypeScore=276.3455;MLEAC=1;MLEAF=0.500;MQ=33.02;MQ0=0;MQRankSum=-4.432;QD=0.47;ReadPosRankSum=-9.931;SB=-8.870e+02 GT:AD:DP:GQ:PL 0/1:351,147:498:99:262,0,2631 chrVII 224842 . T G 2984 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-13.038;DP=506;Dels=0.00;FS=4.438;HaplotypeScore=387.9684;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;MQRankSum=-0.424;QD=5.90;ReadPosRankSum=-0.370;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:114,392:506:94:3017,94,0 chrVII 224845 . A G 707.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.600;DP=519;Dels=0.00;FS=3.045;HaplotypeScore=489.6303;MLEAC=1;MLEAF=0.500;MQ=32.38;MQ0=0;MQRankSum=-2.829;QD=1.36;ReadPosRankSum=-8.129;SB=-1.237e+03 GT:AD:DP:GQ:PL 0/1:325,194:519:99:737,0,2087 chrVII 224848 . T G 3056.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.798;DP=540;Dels=0.00;FS=12.058;HaplotypeScore=603.8249;MLEAC=1;MLEAF=0.500;MQ=33.34;MQ0=0;MQRankSum=-1.968;QD=5.66;ReadPosRankSum=-1.513;SB=-3.026e+03 GT:AD:DP:GQ:PL 0/1:145,395:540:99:3086,0,448 chrVII 224851 . G A 3822.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.353;DP=529;Dels=0.00;FS=0.847;HaplotypeScore=509.0901;MLEAC=2;MLEAF=1.00;MQ=33.43;MQ0=0;MQRankSum=1.018;QD=7.22;ReadPosRankSum=-6.564;SB=-3.187e+03 GT:AD:DP:GQ:PL 1/1:111,414:529:99:3822,224,0 chrVII 224854 . G T 1708.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.656;DP=528;Dels=0.00;FS=9.152;HaplotypeScore=395.6642;MLEAC=1;MLEAF=0.500;MQ=33.75;MQ0=0;MQRankSum=-2.148;QD=3.23;ReadPosRankSum=0.820;SB=-8.560e+02 GT:AD:DP:GQ:PL 0/1:350,177:528:99:1738,0,1635 chrVII 224857 . G A 945.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.312;DP=539;Dels=0.00;FS=0.367;HaplotypeScore=276.3100;MLEAC=1;MLEAF=0.500;MQ=34.79;MQ0=0;MQRankSum=-5.272;QD=1.75;ReadPosRankSum=1.110;SB=-7.230e+02 GT:AD:DP:GQ:PL 0/1:395,143:539:99:975,0,2468 chrVII 224860 . G T 829.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.394;DP=537;Dels=0.00;FS=2.727;HaplotypeScore=242.7662;MLEAC=1;MLEAF=0.500;MQ=35.47;MQ0=0;MQRankSum=-3.734;QD=1.54;ReadPosRankSum=-3.302;SB=-5.230e+02 GT:AD:DP:GQ:PL 0/1:403,134:537:99:859,0,2645 chrVII 224874 . T C 582.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.730;DP=602;Dels=0.00;FS=8.873;HaplotypeScore=190.1038;MLEAC=1;MLEAF=0.500;MQ=41.17;MQ0=0;MQRankSum=-9.203;QD=0.97;ReadPosRankSum=-2.677;SB=-9.340e+02 GT:AD:DP:GQ:PL 0/1:406,195:601:99:612,0,4108 chrVII 224878 . T G 562.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.253;DP=614;Dels=0.00;FS=10.566;HaplotypeScore=178.1683;MLEAC=1;MLEAF=0.500;MQ=42.11;MQ0=0;MQRankSum=-9.600;QD=0.92;ReadPosRankSum=-5.330;SB=-9.030e+02 GT:AD:DP:GQ:PL 0/1:428,185:613:99:592,0,4465 chrVII 224909 . C T 1462 filter AC=2;AF=1.00;AN=2;DP=477;Dels=0.00;FS=0.000;HaplotypeScore=367.7196;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=3.06;SB=-5.976e+03 GT:AD:DP:GQ:PL 1/1:0,476:476:99:1495,162,0 chrVII 224983 . G A 6430.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=16.9998;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=16.53;SB=-3.609e+03 GT:AD:DP:GQ:PL 1/1:0,389:389:99:6430,717,0 chrVII 224994 . T C 6424.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=378;Dels=0.00;FS=4.373;HaplotypeScore=274.6750;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=-0.439;QD=16.99;ReadPosRankSum=1.704;SB=-3.549e+03 GT:AD:DP:GQ:PL 1/1:1,374:378:99:6424,735,0 chrVII 225389 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.00;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3588,393,0 chrVII 225502 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3519,387,0 chrVII 225550 . A G 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.071;QD=22.44;ReadPosRankSum=1.671;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3838,441,0 chrVII 225598 . C G 4297.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.81;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4297,498,0 chrVII 225759 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.5995;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.23;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3653,432,0 chrVII 225917 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.93;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5045,561,0 chrVII 226057 . A G 5255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=267;Dels=0.00;FS=6.901;HaplotypeScore=3.9553;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.005;QD=19.68;ReadPosRankSum=2.366;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:5255,597,0 chrVII 226061 . G T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=7.7181;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.97;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5199,582,0 chrVII 226152 . C T 6388.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=19.7708;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.98;SB=-3.728e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6388,696,0 chrVII 226182 . T C 5539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.000;QD=20.75;ReadPosRankSum=1.706;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:1,264:267:99:5539,645,0 chrVII 226396 . G A 7071.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=25.1537;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.26;SB=-3.485e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:7071,774,0 chrVII 226695 . C T 6145.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=18.2121;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.18;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6145,669,0 chrVII 226740 . T C 5831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=275;Dels=0.00;FS=6.976;HaplotypeScore=16.1368;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.210;QD=21.20;ReadPosRankSum=2.414;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:2,272:275:99:5831,660,0 chrVII 226803 . A T 4845.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.8077;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.02;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4845,540,0 chrVII 226920 . T C 6343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=15.2195;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.633;QD=21.57;ReadPosRankSum=1.708;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:1,292:294:99:6343,717,0 chrVII 226965 . T C 5523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.387;DP=260;Dels=0.00;FS=8.870;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.773;QD=21.24;ReadPosRankSum=3.319;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:4,254:260:99:5523,630,0 chrVII 226986 . C G 5018.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.68;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5018,585,0 chrVII 227025 . A G 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=3.451;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.927;QD=20.54;ReadPosRankSum=1.686;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4682,528,0 chrVII 227280 . A G 5495.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.28;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5495,642,0 chrVII 227427 . T C 3364.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5358;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.99;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3364,381,0 chrVII 227523 . T C 2474 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.79;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2507,285,0 chrVII 227799 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.55;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2562,288,0 chrVII 228148 . C T 6248.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=2;QD=22.80;SB=-3.171e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6248,681,0 chrVII 228350 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.57;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3579,393,0 chrVII 228402 . T C 1617 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.02;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1650,186,0 chrVII 228403 . T A 1695 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.71;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1728,189,0 chrVII 228738 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=17.69;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1554,174,0 chrVII 228739 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=17.89;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1589,174,0 chrVII 228776 . G C 1846 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.25;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1879,216,0 chrVII 228955 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.85;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3268,351,0 chrVII 228966 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.40;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3304,366,0 chrVII 229050 . T C 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=4.044;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.435;QD=19.94;ReadPosRankSum=1.664;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4107,462,0 chrVII 229060 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.89;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:4117,450,0 chrVII 229174 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.0092;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.29;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4725,525,0 chrVII 229302 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=3.406;HaplotypeScore=7.4460;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.417;QD=22.07;ReadPosRankSum=1.661;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4326,486,0 chrVII 229638 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.39;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3819,429,0 chrVII 229770 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.662;QD=22.88;ReadPosRankSum=1.662;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3409,390,0 chrVII 229801 . A G 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=3.188;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.624;QD=21.43;ReadPosRankSum=1.704;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2733,315,0 chrVII 229957 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.86;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2241,252,0 chrVII 230072 . A G 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.577;QD=21.56;ReadPosRankSum=1.695;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2038,234,0 chrVII 230075 . A C 1923 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.37;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1956,222,0 chrVII 230207 . A G 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=5.954;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.799;QD=22.88;ReadPosRankSum=1.705;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3008,348,0 chrVII 230742 . A G 3796.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3796,435,0 chrVII 231071 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2854;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.59;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3229,351,0 chrVII 231415 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.27;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2169,237,0 chrVII 231712 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3550,417,0 chrVII 231876 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.6657;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.30;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3669,405,0 chrVII 231992 . T A 2999 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.26;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3032,342,0 chrVII 232069 . T C 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=138;Dels=0.00;FS=7.360;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.063;QD=20.28;ReadPosRankSum=2.396;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2831,324,0 chrVII 232073 . C G 2796 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.97;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2829,324,0 chrVII 232198 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.00;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1903,210,0 chrVII 232205 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.15;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1982,216,0 chrVII 232303 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.24;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2218,243,0 chrVII 232321 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.99;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2240,255,0 chrVII 232352 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9329;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.22;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1677,186,0 chrVII 232362 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=6.7527;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.40;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1450,159,0 chrVII 232501 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.76;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3421,378,0 chrVII 232606 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.757;QD=22.43;ReadPosRankSum=1.493;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3925,432,0 chrVII 232615 . T A 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.610;QD=20.76;ReadPosRankSum=1.674;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3736,420,0 chrVII 232712 . T G 6459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.983;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.461;QD=21.97;ReadPosRankSum=2.519;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:3,291:294:99:6459,755,0 chrVII 232734 . T C 5913.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=3.3464;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.75;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:5913,669,0 chrVII 232997 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DP=147;Dels=0.00;FS=3.353;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.469;QD=22.68;ReadPosRankSum=0.179;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3334,360,0 chrVII 233364 . G A 4244.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.84;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4244,465,0 chrVII 233683 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2795,309,0 chrVII 233752 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2344,255,0 chrVII 234279 . G C 3573.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3573,417,0 chrVII 235227 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=16.6093;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.06;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4255,483,0 chrVII 235392 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.14;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4827,534,0 chrVII 235464 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.99;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3498,399,0 chrVII 235472 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4615;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.92;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3273,378,0 chrVII 235629 . T A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.88;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3404,384,0 chrVII 236277 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1538,168,0 chrVII 236356 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2328,255,0 chrVII 236710 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.58;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3432,387,0 chrVII 236748 . A C 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.737;QD=23.50;ReadPosRankSum=1.712;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4089,465,0 chrVII 236862 . A C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.010;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.706;QD=21.02;ReadPosRankSum=1.706;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2871,330,0 chrVII 237052 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=129;Dels=0.00;FS=2.882;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.458;QD=21.92;ReadPosRankSum=2.354;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2861,324,0 chrVII 237114 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.506;QD=20.98;ReadPosRankSum=1.705;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2761,315,0 chrVII 237207 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2772;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=17.57;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2018,228,0 chrVII 237218 . A G 1886 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.99;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:1919,222,0 chrVII 237523 . A G 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=100;Dels=0.00;FS=10.466;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.031;QD=21.35;ReadPosRankSum=2.886;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:3,94:100:99:2168,249,0 chrVII 237601 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.3524;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.60;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2880,318,0 chrVII 237668 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=4.367;HaplotypeScore=6.6227;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.366;QD=21.91;ReadPosRankSum=1.676;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2728,315,0 chrVII 237739 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3049,348,0 chrVII 238364 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.46;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3589,408,0 chrVII 238828 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.856;QD=20.41;ReadPosRankSum=1.690;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3409,384,0 chrVII 238829 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.835;QD=20.00;ReadPosRankSum=1.610;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3420,387,0 chrVII 238995 . C A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.5118;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.24;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4205,465,0 chrVII 239009 . A C 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.2999;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=1.197;QD=19.45;ReadPosRankSum=2.158;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:3948,434,0 chrVII 239153 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.71;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3725,420,0 chrVII 239207 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=18.6841;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.57;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4643,519,0 chrVII 239625 . A T 2842 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.08;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2875,312,0 chrVII 239681 . A G 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.010;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.913;QD=20.59;ReadPosRankSum=1.701;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2318,261,0 chrVII 239696 . A G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.491;QD=20.03;ReadPosRankSum=1.702;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2336,270,0 chrVII 239787 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2773,300,0 chrVII 240383 . G A 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.295;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=16.1071;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.665;QD=20.63;ReadPosRankSum=1.362;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2179,243,0 chrVII 240884 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2125,240,0 chrVII 240980 . T C 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=85;Dels=0.00;FS=9.970;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.689;QD=21.16;ReadPosRankSum=2.362;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1832,216,0 chrVII 241218 . A C 1733 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.11;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1766,201,0 chrVII 241255 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.73;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1863,201,0 chrVII 241508 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=131;Dels=0.00;FS=11.991;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.336;QD=20.56;ReadPosRankSum=2.914;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:3,126:131:99:2726,309,0 chrVII 242280 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.92;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2444,264,0 chrVII 242295 . T A 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.472;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.143;QD=23.18;ReadPosRankSum=1.700;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2560,276,0 chrVII 242796 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.2216;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.28;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3196,378,0 chrVII 243089 . G A 5319.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.8352;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.13;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5319,585,0 chrVII 243186 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=187;Dels=0.00;FS=10.781;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.033;QD=22.73;ReadPosRankSum=2.896;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:3,181:187:99:4250,480,0 chrVII 243903 . T C 4993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.3169;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.530;QD=22.39;ReadPosRankSum=1.670;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4993,573,0 chrVII 244125 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=195;Dels=0.00;FS=3.171;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.242;QD=23.57;ReadPosRankSum=1.714;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4597,525,0 chrVII 245148 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.83;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3670,414,0 chrVII 245422 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.54;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3743,414,0 chrVII 245694 . G T 2107 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.46;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2140,243,0 chrVII 245764 . A G 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=5.593;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.418;QD=20.00;ReadPosRankSum=1.613;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2353,273,0 chrVII 245770 . T C 2278 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.34;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2311,261,0 chrVII 246459 . A C 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.661;DP=116;Dels=0.00;FS=5.993;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.731;QD=20.09;ReadPosRankSum=2.905;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2364,267,0 chrVII 247485 . A T 4900.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.6225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4900,555,0 chrVII 247824 . C T 5744.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.6202;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.13;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5744,636,0 chrVII 248013 . C G 3494.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.3568;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.97;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3494,402,0 chrVII 248225 . G C 707 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.20;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:84:740,84,0 chrVII 248647 . C G 1807 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.77;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1840,210,0 chrVII 248886 . A T 2948 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2981,333,0 chrVII 249040 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.65;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3485,384,0 chrVII 249058 . A G 3142 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.6869;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.95;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3175,366,0 chrVII 249450 . A G 1958 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1991,225,0 chrVII 249639 . A G 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=84;Dels=0.00;FS=3.680;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.650;QD=18.07;ReadPosRankSum=1.691;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1551,183,0 chrVII 250183 . C A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.46;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3693,402,0 chrVII 250431 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.29;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4396,495,0 chrVII 250680 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.10;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4114,459,0 chrVII 252024 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.69;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3065,333,0 chrVII 252169 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.72;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3096,351,0 chrVII 252272 . G C 2340 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.89;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2373,276,0 chrVII 252274 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.16;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2604,279,0 chrVII 252343 . T C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-1.210;QD=20.47;ReadPosRankSum=1.705;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2612,300,0 chrVII 252406 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.0473;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.85;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3209,363,0 chrVII 252410 . C A 3147 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.84;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3180,345,0 chrVII 252804 . A T 1776 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=61.7452;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.93;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1809,210,0 chrVII 253122 . T G 2876 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5656;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.99;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2909,339,0 chrVII 253383 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.43;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3106,339,0 chrVII 253849 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=8.599;HaplotypeScore=10.9889;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.303;QD=22.71;ReadPosRankSum=2.376;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3816,447,0 chrVII 253915 . A T 2836 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.16;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2869,312,0 chrVII 253916 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=4.111;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.241;QD=20.25;ReadPosRankSum=1.680;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2767,315,0 chrVII 254177 . A G 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.176;QD=18.75;ReadPosRankSum=1.682;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1327,150,0 chrVII 254183 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=21.48;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1365,147,0 chrVII 254193 . T A 967 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=16.67;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1000,111,0 chrVII 254273 . C A 1167 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=15.16;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1200,132,0 chrVII 254291 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;QD=13.35;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1301,147,0 chrVII 254298 . T C 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=2.889;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;MQRankSum=-1.434;QD=11.66;ReadPosRankSum=2.348;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1164,129,0 chrVII 254363 . C T 1065 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=14.59;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1098,123,0 chrVII 254373 . T C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.635;QD=12.58;ReadPosRankSum=2.906;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:989,114,0 chrVII 254414 . A G 1522 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=14.92;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1555,177,0 chrVII 254422 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=15.78;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1785,198,0 chrVII 254489 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=19.24;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2630,297,0 chrVII 254507 . A G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=3.878;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=1.596;QD=21.28;ReadPosRankSum=1.678;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2735,309,0 chrVII 254552 . C A 3209 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=23.25;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3242,360,0 chrVII 254790 . T C 1538.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100;DP=305;Dels=0.00;FS=158.637;HaplotypeScore=24.4885;MLEAC=1;MLEAF=0.500;MQ=44.46;MQ0=3;MQRankSum=-3.872;QD=5.04;ReadPosRankSum=0.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:197,107:305:99:1568,0,3484 chrVII 254952 . T C 2757.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.409;DP=358;Dels=0.00;FS=2.449;HaplotypeScore=13.5508;MLEAC=1;MLEAF=0.500;MQ=29.19;MQ0=51;MQRankSum=1.503;QD=7.70;ReadPosRankSum=0.438;SB=-1.329e+03 GT:AD:DP:GQ:PL 0/1:178,180:358:99:2787,0,2437 chrVII 255210 . T C 1648.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.841;DP=200;Dels=0.00;FS=86.288;HaplotypeScore=22.1236;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=22;MQRankSum=4.816;QD=8.24;ReadPosRankSum=-0.410;SB=-7.740e+02 GT:AD:DP:GQ:PL 0/1:69,126:200:99:1678,0,237 chrVII 255756 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3585,393,0 chrVII 256325 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.4166;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.54;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3765,429,0 chrVII 256385 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3295,363,0 chrVII 256478 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.42;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3342,375,0 chrVII 256538 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.26;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3030,351,0 chrVII 256952 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.90;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2666,294,0 chrVII 257045 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2735,303,0 chrVII 257078 . A T 2124 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.24;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2157,240,0 chrVII 257195 . A G 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.299;QD=21.57;ReadPosRankSum=1.689;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1780,201,0 chrVII 257287 . T G 1611 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.37;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1644,189,0 chrVII 257566 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.91;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1567,180,0 chrVII 257715 . A G 2162 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2195,249,0 chrVII 258772 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9357;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.07;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2986,324,0 chrVII 258818 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.02;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2459,273,0 chrVII 259222 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.38;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2706,297,0 chrVII 259380 . T C 2663 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2696,315,0 chrVII 259491 . G T 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=154;Dels=0.00;FS=4.337;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.390;QD=22.01;ReadPosRankSum=1.687;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3390,384,0 chrVII 259594 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.84;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3047,336,0 chrVII 260137 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.34;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2231,246,0 chrVII 260198 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2362,267,0 chrVII 260886 . G A 5133.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.54;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5133,564,0 chrVII 261126 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=16.4958;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.81;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2634,300,0 chrVII 261737 . G T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.19;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3618,393,0 chrVII 261775 . A G 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.975;QD=22.82;ReadPosRankSum=1.682;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:4792,534,0 chrVII 261844 . A T 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.622;DP=210;Dels=0.00;FS=6.079;HaplotypeScore=29.1995;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.603;QD=22.32;ReadPosRankSum=2.919;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4688,513,0 chrVII 261966 . T C 5268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=223;Dels=0.00;FS=5.692;HaplotypeScore=11.5575;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.005;QD=23.62;ReadPosRankSum=2.915;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:5268,597,0 chrVII 262041 . T C 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=214;Dels=0.00;FS=5.641;HaplotypeScore=21.8095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.972;QD=22.33;ReadPosRankSum=2.855;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4778,549,0 chrVII 262200 . A T 5433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=242;Dels=0.00;FS=2.873;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.892;QD=22.45;ReadPosRankSum=2.419;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5433,612,0 chrVII 262283 . T C 5361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=248;Dels=0.00;FS=3.774;HaplotypeScore=12.2434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.048;QD=21.62;ReadPosRankSum=1.718;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5361,621,0 chrVII 262340 . G T 5673.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=16.8405;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.57;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5673,633,0 chrVII 262482 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=206;Dels=0.00;FS=6.434;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.348;QD=22.18;ReadPosRankSum=2.414;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4570,519,0 chrVII 262632 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=3.195;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.559;QD=21.41;ReadPosRankSum=1.696;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4132,471,0 chrVII 262671 . A C 4422.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.00;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4422,513,0 chrVII 262798 . G C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.0954;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.20;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3708,414,0 chrVII 262950 . T A 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.465;HaplotypeScore=6.4245;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.447;QD=23.34;ReadPosRankSum=1.686;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3524,396,0 chrVII 262977 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.9059;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.51;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3001,333,0 chrVII 263121 . A C 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.537;QD=21.22;ReadPosRankSum=1.708;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3068,351,0 chrVII 263157 . G T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.86;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3366,381,0 chrVII 263233 . G T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.58;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3838,423,0 chrVII 263382 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.01;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4326,477,0 chrVII 263421 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.33;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4074,462,0 chrVII 263571 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.35;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3715,420,0 chrVII 263598 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.65;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3511,387,0 chrVII 263642 . A T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.0461;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.66;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3535,396,0 chrVII 263678 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.01;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4034,438,0 chrVII 263801 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.77;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3279,357,0 chrVII 263851 . C T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.5154;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.45;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3729,408,0 chrVII 263909 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2913,321,0 chrVII 263981 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.31;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2633,291,0 chrVII 264036 . A T 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.371;QD=22.88;ReadPosRankSum=1.702;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2664,306,0 chrVII 264114 . C A 1689 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1722,189,0 chrVII 264177 . G T 1956 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1989,219,0 chrVII 264360 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.48;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3310,372,0 chrVII 264482 . G T 2815 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2848,324,0 chrVII 264652 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8087;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.17;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3916,429,0 chrVII 264928 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.01;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3653,405,0 chrVII 265218 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.47;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2415,273,0 chrVII 265436 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.60;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3296,372,0 chrVII 265590 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.32;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3925,438,0 chrVII 265689 . C G 2920 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2953,339,0 chrVII 265936 . T C 2237 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.72;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2270,258,0 chrVII 266074 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.85;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2546,282,0 chrVII 266080 . T A 2387 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.89;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2420,264,0 chrVII 266087 . T C 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=114;Dels=0.00;FS=5.879;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.106;QD=18.23;ReadPosRankSum=2.939;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2111,243,0 chrVII 266369 . G C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.54;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3562,417,0 chrVII 266948 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.21;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3259,360,0 chrVII 267395 . T G 452.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.548;DP=127;Dels=0.00;FS=198.944;HaplotypeScore=12.0555;MLEAC=1;MLEAF=0.500;MQ=58.35;MQ0=0;MQRankSum=0.875;QD=3.56;ReadPosRankSum=-7.456;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,50:127:99:482,0,1417 chrVII 267458 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.86;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2641,288,0 chrVII 267480 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.03;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2837,321,0 chrVII 267726 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.4634;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.94;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2534,279,0 chrVII 268323 . C G 3148 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.71;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3181,363,0 chrVII 269104 . T A 1881 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=11.3820;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.39;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1914,216,0 chrVII 269232 . A G 2085 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.72;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2118,240,0 chrVII 269505 . T C 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=211;Dels=0.00;FS=12.512;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.062;QD=20.74;ReadPosRankSum=2.890;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4377,495,0 chrVII 269551 . A G 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.179;QD=21.15;ReadPosRankSum=1.670;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4738,543,0 chrVII 269881 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.64;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4294,507,0 chrVII 269908 . C G 4370.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.71;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,206:211:99:4370,504,0 chrVII 270046 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=3.031;HaplotypeScore=5.8797;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.281;QD=22.62;ReadPosRankSum=2.420;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3709,426,0 chrVII 270325 . A G 207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.903;QD=2.88;ReadPosRankSum=0.561;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:30:240,30,0 chrVII 270374 . A C 1530 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.59;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1563,180,0 chrVII 270491 . A G 2274 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.08;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2307,267,0 chrVII 270608 . G A 4627.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.6990;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.57;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4627,516,0 chrVII 270688 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2649;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.047;QD=21.98;ReadPosRankSum=1.713;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4023,459,0 chrVII 270975 . T C 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.666;DP=212;Dels=0.00;FS=4.859;HaplotypeScore=25.9718;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.819;QD=22.68;ReadPosRankSum=3.792;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:5,206:211:99:4808,543,0 chrVII 271422 . T C 7512.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.841;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=31.5693;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.150;QD=20.41;ReadPosRankSum=1.434;SB=-4.086e+03 GT:AD:DP:GQ:PL 1/1:2,365:368:99:7512,838,0 chrVII 271683 . A G 11004.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.784;DP=517;Dels=0.00;FS=21.156;HaplotypeScore=42.7062;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.721;QD=21.28;ReadPosRankSum=3.769;SB=-4.719e+03 GT:AD:DP:GQ:PL 1/1:5,503:517:99:11004,1239,0 chrVII 271853 . G A 13559.01 filter AC=2;AF=1.00;AN=2;DP=651;Dels=0.00;FS=0.000;HaplotypeScore=62.8558;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.83;SB=-7.430e+03 GT:AD:DP:GQ:PL 1/1:0,645:651:99:13559,1542,0 chrVII 272144 . G A 4080.01 filter AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.6066;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4080,456,0 chrVII 272568 . C G 5871.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.3926;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.93;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,252:256:99:5871,660,0 chrVII 273422 . T A 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.030;QD=22.67;ReadPosRankSum=1.668;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4941,552,0 chrVII 273707 . C T 6711.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=24.3291;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.30;SB=-3.630e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6711,744,0 chrVII 274428 . T A 1314 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=13.69;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1347,150,0 chrVII 274448 . A C 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=6.163;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.887;QD=14.61;ReadPosRankSum=2.397;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1392,159,0 chrVII 275758 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.027;QD=21.93;ReadPosRankSum=1.705;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2884,330,0 chrVII 276180 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3438,378,0 chrVII 276379 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.36;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2860,327,0 chrVII 276429 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=164;Dels=0.00;FS=6.544;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.229;QD=22.10;ReadPosRankSum=2.419;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3625,408,0 chrVII 276488 . G T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.54;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3403,381,0 chrVII 276637 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1489;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.17;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4213,465,0 chrVII 276866 . T G 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=210;Dels=0.00;FS=10.211;HaplotypeScore=8.4928;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.870;QD=22.11;ReadPosRankSum=2.899;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4643,525,0 chrVII 277086 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.30;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3568,390,0 chrVII 277223 . A G 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.381;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.577;QD=19.77;ReadPosRankSum=1.710;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3176,363,0 chrVII 277224 . G C 3186 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.79;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3219,369,0 chrVII 277283 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=147;Dels=0.00;FS=3.041;HaplotypeScore=4.2277;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.572;QD=17.30;ReadPosRankSum=2.347;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,142:147:99:2576,288,0 chrVII 277287 . T C 2340 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.4938;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=16.71;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2373,279,0 chrVII 277346 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.31;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3325,360,0 chrVII 277395 . A T 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=157;Dels=0.01;FS=2.936;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.181;QD=20.54;ReadPosRankSum=2.355;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3258,357,0 chrVII 277418 . T A 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.419;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.732;QD=20.55;ReadPosRankSum=1.665;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3239,354,0 chrVII 277478 . C A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.01;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3487,393,0 chrVII 278171 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.7254;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.342;QD=20.34;ReadPosRankSum=1.657;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:4698,534,0 chrVII 278753 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1447,159,0 chrVII 278975 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.08;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2156,249,0 chrVII 279315 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.31;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4149,483,0 chrVII 279348 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.43;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4071,456,0 chrVII 279396 . T C 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=216;Dels=0.00;FS=4.348;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.153;QD=18.27;ReadPosRankSum=1.684;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:3946,462,0 chrVII 279411 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.5562;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.475;QD=18.33;ReadPosRankSum=1.700;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:3978,465,0 chrVII 279435 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.00;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4081,453,0 chrVII 279857 . C T 6039.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=22.28;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6039,669,0 chrVII 279936 . C T 6704.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=6.1078;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=20.95;SB=-3.418e+03 GT:AD:DP:GQ:PL 1/1:0,320:320:99:6704,738,0 chrVII 279942 . G A 6057.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=19.73;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:6057,660,0 chrVII 279983 . G A 6304.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=18.9826;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.15;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:6304,699,0 chrVII 280092 . A C 66.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=59;Dels=0.00;FS=9.110;HaplotypeScore=50.4527;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;MQRankSum=-1.915;QD=1.13;ReadPosRankSum=3.302;SB=-6.155e+02 GT:AD:DP:GQ:PL 1/1:4,55:59:12:99,12,0 chrVII 280122 . C A 105.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.518;DP=75;Dels=0.00;FS=13.331;HaplotypeScore=58.2949;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-0.314;QD=1.40;ReadPosRankSum=3.645;SB=-1.523e+02 GT:AD:DP:GQ:PL 1/1:34,41:75:15:138,15,0 chrVII 280123 . T A 104.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.223;DP=78;Dels=0.00;FS=15.403;HaplotypeScore=60.8388;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=-0.490;QD=1.34;ReadPosRankSum=3.612;SB=-1.493e+02 GT:AD:DP:GQ:PL 1/1:37,41:78:15:137,15,0 chrVII 280161 . T C 301.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.227;DP=269;Dels=0.00;FS=10.000;HaplotypeScore=7.1395;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=0;MQRankSum=-0.538;QD=1.12;ReadPosRankSum=-6.603;SB=-1.021e+03 GT:AD:DP:GQ:PL 0/1:147,122:269:99:331,0,922 chrVII 280173 . T C 985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-7.638;DP=284;Dels=0.00;FS=5.796;HaplotypeScore=254.4415;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;MQRankSum=-0.908;QD=3.47;ReadPosRankSum=5.587;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:135,148:283:53:1018,53,0 chrVII 280179 . C T 826.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.906;DP=348;Dels=0.00;FS=15.870;HaplotypeScore=251.7715;MLEAC=1;MLEAF=0.500;MQ=32.65;MQ0=0;MQRankSum=1.897;QD=2.37;ReadPosRankSum=-1.107;SB=-1.800e+03 GT:AD:DP:GQ:PL 0/1:149,198:348:99:856,0,882 chrVII 280188 . T C 772.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.169;DP=376;Dels=0.00;FS=10.926;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=34.69;MQ0=0;MQRankSum=-1.910;QD=2.05;ReadPosRankSum=-1.193;SB=-8.530e+02 GT:AD:DP:GQ:PL 0/1:228,148:376:99:802,0,1517 chrVII 280191 . T C 757.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.292;DP=376;Dels=0.00;FS=11.939;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=34.90;MQ0=0;MQRankSum=-4.043;QD=2.01;ReadPosRankSum=-3.181;SB=-8.260e+02 GT:AD:DP:GQ:PL 0/1:230,146:376:99:787,0,1664 chrVII 280203 . C T 708.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.390;DP=388;Dels=0.00;FS=3.026;HaplotypeScore=10.8125;MLEAC=1;MLEAF=0.500;MQ=38.54;MQ0=0;MQRankSum=-4.839;QD=1.82;ReadPosRankSum=-12.111;SB=-6.640e+02 GT:AD:DP:GQ:PL 0/1:270,118:388:99:738,0,2087 chrVII 280404 . A C 3886.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=18.59;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3886,447,0 chrVII 280485 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.5580;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.70;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3995,447,0 chrVII 280546 . T G 4084.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.5702;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.73;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4084,468,0 chrVII 280575 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=2.830;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.487;QD=21.02;ReadPosRankSum=2.360;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3489,405,0 chrVII 280634 . A T 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=146;Dels=0.00;FS=6.544;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.109;QD=21.45;ReadPosRankSum=2.416;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3164,348,0 chrVII 280942 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.01;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3929,441,0 chrVII 281267 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.04;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3258,372,0 chrVII 281465 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.36;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1592,180,0 chrVII 281475 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.13;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1582,183,0 chrVII 281515 . G T 1304 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1337,156,0 chrVII 281553 . T C 1148 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1181,135,0 chrVII 281690 . A G 2448 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2481,282,0 chrVII 281691 . T C 2094 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.244;QD=17.60;ReadPosRankSum=2.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,114:119:99:2127,252,0 chrVII 281913 . A G 4443.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.10;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4443,510,0 chrVII 282056 . T C 5063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.9899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.577;QD=22.40;ReadPosRankSum=1.530;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,222:226:99:5063,585,0 chrVII 282117 . A G 5365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=230;Dels=0.00;FS=4.123;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.136;QD=23.33;ReadPosRankSum=1.687;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5365,600,0 chrVII 282168 . T C 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=240;Dels=0.00;FS=2.902;HaplotypeScore=15.2062;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.437;QD=22.81;ReadPosRankSum=2.398;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5474,624,0 chrVII 282222 . A G 5681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.285;DP=262;Dels=0.00;FS=3.061;HaplotypeScore=13.7415;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.732;QD=21.68;ReadPosRankSum=1.347;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:5681,637,0 chrVII 282423 . G A 4008.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.09;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4008,450,0 chrVII 282456 . G C 3784.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.5579;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.50;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3784,441,0 chrVII 282627 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.59;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3325,378,0 chrVII 282702 . A T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.3251;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.94;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3796,426,0 chrVII 282960 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=189;Dels=0.00;FS=7.741;HaplotypeScore=11.4292;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.742;QD=21.17;ReadPosRankSum=2.358;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4002,456,0 chrVII 283008 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.21;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4008,465,0 chrVII 283065 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.162;QD=20.74;ReadPosRankSum=1.712;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3546,399,0 chrVII 283107 . G A 4146.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.5989;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.17;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4146,459,0 chrVII 283173 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.62;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4393,469,0 chrVII 283179 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.30;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3902,429,0 chrVII 283231 . T G 3573.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.79;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3573,423,0 chrVII 283332 . T C 4643.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.9082;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.30;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4643,531,0 chrVII 283431 . G A 5092.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.24;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5092,570,0 chrVII 283608 . C T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3961,435,0 chrVII 283968 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.64;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3357,369,0 chrVII 284038 . A G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.859;QD=21.13;ReadPosRankSum=1.679;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2843,327,0 chrVII 284118 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.88;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2058,234,0 chrVII 284134 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.34;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2060,228,0 chrVII 284172 . G A 2399 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.61;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2432,267,0 chrVII 284212 . C G 2848 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.54;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2881,327,0 chrVII 284273 . A G 2653 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.40;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2686,318,0 chrVII 284354 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.02;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3611,414,0 chrVII 284525 . A G 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.357;QD=22.09;ReadPosRankSum=1.677;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4175,471,0 chrVII 284582 . A C 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.8946;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.302;QD=22.22;ReadPosRankSum=1.715;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4466,522,0 chrVII 284606 . G T 4266.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.55;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4266,483,0 chrVII 284675 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.73;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3536,402,0 chrVII 284855 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=3.122;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.987;QD=23.79;ReadPosRankSum=1.710;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3807,435,0 chrVII 284996 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3464,375,0 chrVII 285065 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.8701;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.83;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3584,405,0 chrVII 285407 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.7299;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.35;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2851,324,0 chrVII 286047 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.02;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1552,174,0 chrVII 286154 . G C 1523 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.07;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1556,174,0 chrVII 286164 . C G 1620 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.25;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1653,192,0 chrVII 286558 . A T 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=120;Dels=0.00;FS=6.747;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.217;QD=21.37;ReadPosRankSum=2.367;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2597,288,0 chrVII 286590 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.229;QD=21.90;ReadPosRankSum=1.681;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3011,345,0 chrVII 286632 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.61;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3754,423,0 chrVII 286716 . T C 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=153;Dels=0.00;FS=5.048;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.252;QD=20.61;ReadPosRankSum=3.345;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3187,363,0 chrVII 286731 . T C 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.742;QD=20.36;ReadPosRankSum=1.710;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3169,363,0 chrVII 286789 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.81;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3308,372,0 chrVII 286802 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.94;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3497,393,0 chrVII 286921 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.15;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4167,456,0 chrVII 287143 . T C 2951 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.70;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2984,333,0 chrVII 287189 . G T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.63;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3356,366,0 chrVII 287258 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9218;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=19.07;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2474,273,0 chrVII 287266 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.59;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2462,273,0 chrVII 287340 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.49;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2547,279,0 chrVII 287343 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.37;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2403,276,0 chrVII 287487 . T C 2082 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.79;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2115,243,0 chrVII 287492 . T C 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=-1.675;QD=17.12;ReadPosRankSum=1.704;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2156,246,0 chrVII 287520 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.781;DP=135;Dels=0.00;FS=12.311;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.194;QD=18.10;ReadPosRankSum=3.711;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:5,130:135:99:2477,285,0 chrVII 287552 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=18.45;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2469,273,0 chrVII 287597 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.30;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2829,315,0 chrVII 287623 . T C 2756 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.87;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2789,324,0 chrVII 287685 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.94;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3400,375,0 chrVII 287729 . C A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=24.13;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4198,462,0 chrVII 287832 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.12;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3224,351,0 chrVII 287932 . G A 2878 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.32;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2911,330,0 chrVII 287934 . A C 2877 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.376;QD=19.57;ReadPosRankSum=1.613;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2910,330,0 chrVII 287936 . G T 3005 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.87;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3038,333,0 chrVII 288017 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.130;QD=22.15;ReadPosRankSum=1.672;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2580,297,0 chrVII 288130 . C A 2964 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.91;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2997,324,0 chrVII 288473 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.76;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3665,396,0 chrVII 288616 . C T 4070.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.3398;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.12;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4070,459,0 chrVII 288796 . C T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.48;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4082,450,0 chrVII 288805 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.44;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4010,438,0 chrVII 289212 . T C 4690.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.33;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4690,546,0 chrVII 289440 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.47;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3460,390,0 chrVII 289648 . A T 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.247;QD=22.90;ReadPosRankSum=1.686;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3435,381,0 chrVII 289886 . A C 2588 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.38;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2621,297,0 chrVII 289892 . A G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.259;QD=19.30;ReadPosRankSum=1.678;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2484,285,0 chrVII 290162 . G C 5009.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.43;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5009,567,0 chrVII 290465 . C T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.16;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3721,408,0 chrVII 290846 . T C 6297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=298;Dels=0.00;FS=10.677;HaplotypeScore=11.3170;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.085;QD=21.13;ReadPosRankSum=2.854;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:3,293:298:99:6297,723,0 chrVII 290867 . A G 6432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=315;Dels=0.00;FS=5.936;HaplotypeScore=9.0041;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.080;QD=20.42;ReadPosRankSum=2.971;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:3,312:315:99:6432,741,0 chrVII 291088 . C G 5183.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=7.2814;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.34;SB=-3.294e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:5183,588,0 chrVII 291095 . T C 5079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=272;Dels=0.00;FS=6.065;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.574;QD=18.67;ReadPosRankSum=2.930;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:3,268:272:99:5079,591,0 chrVII 291530 . A G 3035 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.35;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3068,342,0 chrVII 291643 . A G 2151 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=90.4961;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.87;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2184,252,0 chrVII 291925 . T C 3529.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.5621;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.68;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3529,411,0 chrVII 291992 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4210,474,0 chrVII 292374 . T G 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.280;QD=23.07;ReadPosRankSum=1.713;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4291,486,0 chrVII 292839 . G A 4451.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1244;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.71;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4451,498,0 chrVII 293092 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.98;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4124,471,0 chrVII 293122 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.19;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4217,489,0 chrVII 293254 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=167;Dels=0.00;FS=7.715;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.787;QD=21.29;ReadPosRankSum=2.405;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3556,408,0 chrVII 293255 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.17;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3702,408,0 chrVII 293303 . G C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.29;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3652,420,0 chrVII 294083 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.68;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2425,279,0 chrVII 294404 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.655;QD=23.67;ReadPosRankSum=1.706;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3205,366,0 chrVII 294462 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=22.92;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4515,513,0 chrVII 294491 . C T 4367.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=21.41;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4367,480,0 chrVII 294501 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=18.90;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3912,432,0 chrVII 294509 . G T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=19.51;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3843,420,0 chrVII 295268 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.19;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3339,384,0 chrVII 295562 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8776;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.49;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1537,171,0 chrVII 295605 . C G 1050 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.81;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1083,126,0 chrVII 295612 . T C 922 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.21;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:48:99:955,108,0 chrVII 295907 . G C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.94;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3472,402,0 chrVII 296177 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.28;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3545,384,0 chrVII 296299 . C G 2367 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.94;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2400,279,0 chrVII 296304 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.93;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2628,288,0 chrVII 296376 . A G 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.025;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.025;QD=21.46;ReadPosRankSum=1.661;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3209,366,0 chrVII 296534 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2958;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=15.57;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1808,207,0 chrVII 296630 . T C 2348 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.15;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2381,270,0 chrVII 296999 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.00;FS=2.929;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.306;QD=20.60;ReadPosRankSum=2.373;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2711,309,0 chrVII 297191 . A C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=3.571;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.000;QD=21.68;ReadPosRankSum=1.627;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2895,327,0 chrVII 297242 . A T 2892 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.2901;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.25;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2925,318,0 chrVII 297260 . A G 2747 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.35;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2780,318,0 chrVII 297295 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.00;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3498,375,0 chrVII 297365 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.57;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3270,369,0 chrVII 297386 . G C 2795 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.96;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2828,315,0 chrVII 297805 . A C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=4.116;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.343;QD=23.15;ReadPosRankSum=0.311;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4144,443,0 chrVII 297948 . C T 3166 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.8069;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.94;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3199,348,0 chrVII 298071 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.632;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.068;QD=21.73;ReadPosRankSum=1.674;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2662,303,0 chrVII 298168 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.95;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2188,240,0 chrVII 298391 . A G 3160 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.94;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3193,366,0 chrVII 299192 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.707;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.535;QD=21.71;ReadPosRankSum=1.668;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3517,408,0 chrVII 299519 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.8979;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.54;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4566,507,0 chrVII 299630 . C G 5223.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.3898;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.32;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5223,591,0 chrVII 299945 . T A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.82;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3763,429,0 chrVII 301090 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.40;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3449,378,0 chrVII 301210 . T C 2792 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.94;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2825,327,0 chrVII 301231 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.58;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2676,309,0 chrVII 301260 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=17.67;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2383,261,0 chrVII 301321 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.74;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2086,234,0 chrVII 301405 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=3.044;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.544;QD=22.60;ReadPosRankSum=1.705;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2971,339,0 chrVII 302319 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=135;Dels=0.00;FS=3.023;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.302;QD=21.35;ReadPosRankSum=2.395;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2915,327,0 chrVII 302788 . G A 2641 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2674,291,0 chrVII 303175 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3571,402,0 chrVII 303643 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=20.96;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3177,357,0 chrVII 303645 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=0.849;QD=19.95;ReadPosRankSum=2.320;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3066,348,0 chrVII 303882 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.9365;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.45;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:3967,435,0 chrVII 303887 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.5705;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.93;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,215:220:99:3944,435,0 chrVII 303997 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.7071;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.370;QD=20.67;ReadPosRankSum=1.692;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,172:177:99:3658,417,0 chrVII 304140 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.011;QD=21.72;ReadPosRankSum=1.710;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3367,387,0 chrVII 304214 . T A 3175 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.01;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3208,357,0 chrVII 304247 . A G 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.933;QD=21.40;ReadPosRankSum=1.679;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2837,327,0 chrVII 304566 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.482;QD=21.88;ReadPosRankSum=1.710;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3522,402,0 chrVII 304609 . A T 2788 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.63;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2821,315,0 chrVII 304611 . T C 2689 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.94;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2722,309,0 chrVII 304734 . A G 3033 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.7535;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.36;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3066,351,0 chrVII 305050 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.25;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2992,348,0 chrVII 305075 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.53;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3142,345,0 chrVII 305095 . A G 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.430;QD=20.48;ReadPosRankSum=1.704;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2593,294,0 chrVII 305110 . T C 2146 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.16;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2179,249,0 chrVII 305233 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=3.951;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.562;QD=23.10;ReadPosRankSum=1.710;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3557,417,0 chrVII 305542 . A T 2873 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.23;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2906,324,0 chrVII 305553 . A T 3046 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.91;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3079,333,0 chrVII 305644 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.68;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3578,396,0 chrVII 305653 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.23;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3072,357,0 chrVII 305680 . T G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=163;Dels=0.00;FS=6.102;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.456;QD=19.06;ReadPosRankSum=2.956;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:3,158:163:99:3140,357,0 chrVII 305743 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.5557;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.66;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3999,435,0 chrVII 305802 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.85;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3861,420,0 chrVII 305956 . T C 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.161;DP=206;Dels=0.00;FS=3.011;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.078;QD=21.82;ReadPosRankSum=2.401;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4494,510,0 chrVII 306050 . A G 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=224;Dels=0.00;FS=7.853;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.729;QD=21.90;ReadPosRankSum=2.384;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4905,567,0 chrVII 306128 . A G 4859.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.31;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4859,552,0 chrVII 306133 . A G 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=225;Dels=0.00;FS=14.905;HaplotypeScore=6.6547;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.318;QD=20.31;ReadPosRankSum=3.327;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:4,218:224:99:4569,516,0 chrVII 306207 . T C 5799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=275;Dels=0.00;FS=9.567;HaplotypeScore=17.4281;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.813;QD=21.09;ReadPosRankSum=2.945;SB=-3.150e+03 GT:AD:DP:GQ:PL 1/1:3,271:275:99:5799,672,0 chrVII 306279 . C T 5568.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.0095;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.01;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5568,609,0 chrVII 306537 . C T 6141.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=24.0869;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.49;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6141,690,0 chrVII 306650 . C T 6408.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.82;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6408,702,0 chrVII 306793 . T C 6957.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=21.3441;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.61;SB=-3.707e+03 GT:AD:DP:GQ:PL 1/1:0,320:322:99:6957,807,0 chrVII 306889 . A G 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.689;DP=230;Dels=0.00;FS=2.450;HaplotypeScore=19.7858;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.487;QD=20.44;ReadPosRankSum=2.847;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:3,226:230:99:4701,543,0 chrVII 307064 . C G 1465 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=61.8565;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1498,171,0 chrVII 307148 . T C 417 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=12.64;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,30:33:51:450,51,0 chrVII 307221 . A T 76.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=10.93;ReadPosRankSum=-0.742;SB=2.60 GT:AD:DP:GQ:PL 1/1:1,6:7:12:109,12,0 chrVII 307499 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.639;QD=22.78;ReadPosRankSum=2.931;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3644,414,0 chrVII 307742 . T C 5660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.593;DP=258;Dels=0.00;FS=17.977;HaplotypeScore=20.2241;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.043;QD=21.94;ReadPosRankSum=3.763;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:5,251:258:99:5660,660,0 chrVII 307808 . C T 5024.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.51;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:5024,549,0 chrVII 307865 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=4.448;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.641;QD=19.70;ReadPosRankSum=1.713;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3566,414,0 chrVII 307868 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.91;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3722,411,0 chrVII 308423 . C A 3121 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3154,348,0 chrVII 308778 . T A 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.020;QD=23.03;ReadPosRankSum=1.603;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2497,279,0 chrVII 308830 . A G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.402;QD=21.71;ReadPosRankSum=1.649;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2768,315,0 chrVII 308913 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3920,426,0 chrVII 309574 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=165;Dels=0.00;FS=8.766;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=2.547;QD=21.41;ReadPosRankSum=3.406;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:4,159:165:99:3532,408,0 chrVII 309604 . C T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.05;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4057,438,0 chrVII 310446 . C G 3026 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.93;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3059,351,0 chrVII 310627 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.19;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2119,240,0 chrVII 310628 . G C 2102 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.90;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2135,243,0 chrVII 310712 . T C 1907 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.44;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1940,219,0 chrVII 310740 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8281;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.61;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1680,192,0 chrVII 310869 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.50;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2699,303,0 chrVII 310899 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.89;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2480,279,0 chrVII 310906 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.580;QD=18.75;ReadPosRankSum=2.410;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2396,276,0 chrVII 311141 . C T 4941.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.01;FS=0.000;HaplotypeScore=13.5075;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.26;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4941,555,0 chrVII 311169 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.01;FS=0.000;HaplotypeScore=11.3696;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.71;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4307,489,0 chrVII 311249 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.01;FS=0.000;HaplotypeScore=24.3218;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=21.11;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4475,507,0 chrVII 311315 . A T 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=191;Dels=0.00;FS=2.708;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.829;QD=22.61;ReadPosRankSum=2.372;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4319,480,0 chrVII 311512 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=144;Dels=0.00;FS=3.165;HaplotypeScore=20.5235;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.206;QD=21.65;ReadPosRankSum=1.708;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3150,363,0 chrVII 311657 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.36;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2761,303,0 chrVII 311673 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.73;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2769,303,0 chrVII 311699 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.65;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2941,315,0 chrVII 311762 . T C 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=4.164;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.808;QD=20.13;ReadPosRankSum=1.703;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2449,279,0 chrVII 311774 . T C 2140 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=20.00;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2173,243,0 chrVII 311795 . A T 1666 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.72;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1699,192,0 chrVII 311891 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8645;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.03;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3073,351,0 chrVII 312031 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.94;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2043,231,0 chrVII 312110 . T A 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.490;QD=23.05;ReadPosRankSum=1.657;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2154,234,0 chrVII 312427 . C T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.7364;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.81;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4357,480,0 chrVII 312735 . A G 3196 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.89;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3229,366,0 chrVII 312743 . T G 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.069;QD=20.97;ReadPosRankSum=1.585;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3011,345,0 chrVII 312897 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.9139;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.87;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2850,315,0 chrVII 312945 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.57;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2786,306,0 chrVII 312966 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.70;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2553,282,0 chrVII 313053 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2650,291,0 chrVII 313184 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.5305;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.79;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2909,321,0 chrVII 313362 . T C 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=174;Dels=0.00;FS=2.579;HaplotypeScore=14.3879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.301;QD=23.37;ReadPosRankSum=2.948;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4066,465,0 chrVII 313870 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.351;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=9.4199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.126;QD=21.69;ReadPosRankSum=-0.666;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3135,333,0 chrVII 314032 . A G 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=191;Dels=0.00;FS=10.255;HaplotypeScore=9.6260;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.431;QD=22.95;ReadPosRankSum=2.424;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4384,501,0 chrVII 314187 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8264;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.59;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3303,363,0 chrVII 314274 . C T 2764 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.11;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2797,306,0 chrVII 314328 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1915,216,0 chrVII 314428 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1516,174,0 chrVII 314482 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2231,243,0 chrVII 314617 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2608,288,0 chrVII 315146 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.72;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,148:153:99:3476,390,0 chrVII 315504 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.167;QD=21.46;ReadPosRankSum=1.706;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2930,336,0 chrVII 315509 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.43;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2832,324,0 chrVII 315557 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=18.71;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2129,240,0 chrVII 315611 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.02;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2887,330,0 chrVII 315872 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=188;Dels=0.00;FS=10.531;HaplotypeScore=11.8143;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.060;QD=21.04;ReadPosRankSum=2.940;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:3,182:188:99:3956,453,0 chrVII 316175 . G A 5051.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.6908;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.28;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5051,558,0 chrVII 316307 . G A 5064.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.35;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5064,561,0 chrVII 316332 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=3.222;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-1.237;QD=22.93;ReadPosRankSum=1.714;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4356,507,0 chrVII 316576 . C T 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=4.3533;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.100;QD=17.69;ReadPosRankSum=1.334;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1607,169,0 chrVII 316577 . A C 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.791;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=4.2986;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.244;QD=17.70;ReadPosRankSum=2.192;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1591,170,0 chrVII 316588 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.21;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1832,207,0 chrVII 316664 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.64;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1165,129,0 chrVII 316685 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.37;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1123,126,0 chrVII 316731 . A T 846 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.59;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:879,99,0 chrVII 316750 . C A 1136 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.04;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1169,132,0 chrVII 316827 . T C 2273 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.2411;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.19;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2306,267,0 chrVII 316980 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.39;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2817,306,0 chrVII 316985 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.73;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2943,315,0 chrVII 317124 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2690,300,0 chrVII 317159 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=4.409;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.226;QD=24.72;ReadPosRankSum=1.707;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3412,387,0 chrVII 317265 . A T 2212 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.23;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2245,243,0 chrVII 317269 . A T 2238 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.29;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2271,249,0 chrVII 317405 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=163;Dels=0.00;FS=2.735;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.389;QD=22.77;ReadPosRankSum=2.419;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3711,423,0 chrVII 317746 . T C 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=219;Dels=0.00;FS=3.015;HaplotypeScore=17.3719;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.465;QD=22.05;ReadPosRankSum=2.427;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4829,549,0 chrVII 318040 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.15;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2211,255,0 chrVII 318105 . T A 2254 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.87;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2287,258,0 chrVII 318111 . G A 2195 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=20.14;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2228,243,0 chrVII 318305 . T G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590;DP=86;Dels=0.00;FS=2.742;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=0.043;QD=19.69;ReadPosRankSum=1.648;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1726,160,0 chrVII 318310 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.110;DP=83;Dels=0.00;FS=6.384;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=-0.256;QD=19.64;ReadPosRankSum=2.623;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1663,156,0 chrVII 318334 . T C 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=74;Dels=0.00;FS=8.862;HaplotypeScore=60.4476;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-1.017;QD=20.12;ReadPosRankSum=2.350;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1522,174,0 chrVII 318383 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=22.81;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2200,252,0 chrVII 318421 . A G 2981 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=22.41;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3014,348,0 chrVII 318441 . G C 2903 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=21.99;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2936,342,0 chrVII 318467 . T C 2358 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=19.65;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2391,282,0 chrVII 318583 . T C 2280 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=18.54;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2313,267,0 chrVII 318584 . C T 2366 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=19.24;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2399,267,0 chrVII 318587 . T C 2353 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=18.53;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2386,270,0 chrVII 318591 . A G 2269 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=17.06;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2302,270,0 chrVII 318614 . T C 2238 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=16.10;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2271,261,0 chrVII 318654 . A C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;MQRankSum=-0.109;QD=16.99;ReadPosRankSum=1.684;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2480,285,0 chrVII 318751 . T G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=127;Dels=0.01;FS=10.005;HaplotypeScore=14.8683;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.096;QD=20.49;ReadPosRankSum=2.848;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2635,300,0 chrVII 318860 . A G 2151 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.51;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2184,249,0 chrVII 318881 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.96;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2214,243,0 chrVII 319010 . A T 1755 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1788,201,0 chrVII 319395 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=22.24;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2368,267,0 chrVII 319405 . A C 2077 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=21.64;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2110,240,0 chrVII 319872 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=151;Dels=0.00;FS=5.978;HaplotypeScore=15.5845;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.820;QD=20.89;ReadPosRankSum=2.847;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3188,363,0 chrVII 319966 . A C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=3.777;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=0.484;QD=18.99;ReadPosRankSum=1.605;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2635,300,0 chrVII 319967 . A C 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.712;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=0.750;QD=19.00;ReadPosRankSum=1.706;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2579,294,0 chrVII 320018 . C G 2357 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2127;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=18.27;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2390,276,0 chrVII 320532 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.38;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2405,273,0 chrVII 320604 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.78;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3622,420,0 chrVII 320633 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.17;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3725,420,0 chrVII 320668 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=3.006;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.107;QD=21.40;ReadPosRankSum=2.318;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3221,369,0 chrVII 320756 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=175;Dels=0.00;FS=2.973;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=2.028;QD=23.67;ReadPosRankSum=2.407;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4143,468,0 chrVII 320828 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.37;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3547,408,0 chrVII 320846 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.279;QD=20.87;ReadPosRankSum=1.708;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3038,345,0 chrVII 320980 . C A 2831 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.08;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2864,321,0 chrVII 321024 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.01;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2234,249,0 chrVII 321054 . T A 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=90;Dels=0.02;FS=6.909;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-0.770;QD=15.10;ReadPosRankSum=2.338;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1392,156,0 chrVII 321057 . T A 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=86;Dels=0.00;FS=10.153;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;MQRankSum=0.777;QD=15.40;ReadPosRankSum=2.918;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1357,153,0 chrVII 321072 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.24;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1654,189,0 chrVII 321112 . T G 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.577;QD=20.20;ReadPosRankSum=1.703;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2457,282,0 chrVII 321128 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.96;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2778,300,0 chrVII 321170 . C A 2297 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.69;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2330,261,0 chrVII 321247 . C A 2259 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=23.05;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2292,255,0 chrVII 321275 . A G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=97;Dels=0.00;FS=2.561;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.260;QD=20.69;ReadPosRankSum=2.928;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2040,237,0 chrVII 321284 . A T 1864 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=21.93;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1897,210,0 chrVII 321469 . C A 642 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=19.45;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:75:675,75,0 chrVII 321472 . C T 596 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=20.55;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:72:629,72,0 chrVII 321718 . G C 1610 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.18;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1643,189,0 chrVII 321824 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=23.75;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3216,354,0 chrVII 322208 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=179;Dels=0.00;FS=4.170;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.742;QD=21.58;ReadPosRankSum=1.692;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:3862,441,0 chrVII 322369 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=165;Dels=0.00;FS=2.554;HaplotypeScore=14.0243;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.896;QD=19.35;ReadPosRankSum=2.933;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3226,366,0 chrVII 323014 . A G 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=206;Dels=0.00;FS=6.523;HaplotypeScore=20.8890;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.078;QD=21.34;ReadPosRankSum=2.378;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4397,513,0 chrVII 323073 . T C 4180.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.09;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4180,477,0 chrVII 323128 . T C 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=189;Dels=0.00;FS=4.376;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=1.146;QD=22.59;ReadPosRankSum=1.677;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4269,486,0 chrVII 323170 . T C 4544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=5.621;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.064;QD=22.83;ReadPosRankSum=1.679;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4544,525,0 chrVII 323295 . A G 2585 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=21.02;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2618,300,0 chrVII 323372 . T G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;DP=66;Dels=0.00;FS=17.381;HaplotypeScore=79.2497;MLEAC=1;MLEAF=0.500;MQ=38.26;MQ0=1;MQRankSum=-2.231;QD=0.30;ReadPosRankSum=3.647;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:50,16:66:31:50,0,31 chrVII 323433 . A T 888 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=4.168;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=0;MQRankSum=-1.732;QD=18.89;ReadPosRankSum=1.659;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:921,119,0 chrVII 323434 . G A 875 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=19.02;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:908,116,0 chrVII 323441 . C T 960 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.00;MQ0=0;QD=19.20;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:993,125,0 chrVII 323461 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=20.66;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1128,141,0 chrVII 323465 . G T 1104 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=19.03;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1137,143,0 chrVII 323495 . C G 603 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=16.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:72:636,72,0 chrVII 323500 . C T 640 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=17.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:75:673,75,0 chrVII 323540 . T C 516 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=16.12;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:63:549,63,0 chrVII 323584 . G A 353 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=0;QD=16.81;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:386,51,0 chrVII 323594 . G A 440 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=18.33;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:60:473,60,0 chrVII 323600 . T C 463 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=0;QD=17.81;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:63:496,63,0 chrVII 323602 . A G 447 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=0;QD=17.19;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:63:480,63,0 chrVII 323607 . T G 491 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.87;MQ0=0;QD=15.84;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:69:524,69,0 chrVII 323641 . A C 454 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.47;MQ0=0;QD=14.19;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:66:487,66,0 chrVII 323875 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.30;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:51,6,0 chrVII 323879 . G T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.72;SB=-2.864e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:53,6,0 chrVII 323883 . G C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.42;SB=-2.871e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:53,6,0 chrVII 323897 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.36;SB=-2.696e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:80,9,0 chrVII 323923 . G A 121.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=14.8919;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.57;SB=-2.714e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:154,18,0 chrVII 323966 . A G 95.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-0.868;QD=5.95;ReadPosRankSum=1.519;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:1,15:16:15:128,15,0 chrVII 323971 . A T 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=7.17;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:126,15,0 chrVII 323973 . C G 92.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=7.10;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:125,15,0 chrVII 324002 . C G 44.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=5.00;SB=-2.295e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:77,9,0 chrVII 324005 . C G 41.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=4.66;SB=-2.295e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:74,9,0 chrVII 324062 . G A 177.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=13.62;SB=-9.477e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:24:210,24,0 chrVII 324082 . G A 672 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=19.20;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:78:705,78,0 chrVII 324119 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=6.7823;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=21.21;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1518,174,0 chrVII 324161 . G C 96.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=-0.838;QD=1.60;ReadPosRankSum=-5.320;SB=2.74 GT:AD:DP:GQ:PL 1/1:47,12:60:15:129,15,0 chrVII 324163 . G C 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.762;DP=57;Dels=0.00;FS=7.443;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-0.156;QD=0.82;ReadPosRankSum=-4.730;SB=2.03 GT:AD:DP:GQ:PL 1/1:47,9:57:9:79,9,0 chrVII 324248 . T C 64.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=5.86;SB=-2.651e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:97,12,0 chrVII 324278 . A G 255 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=10.63;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:33:288,33,0 chrVII 324279 . T C 250 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=10.42;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:33:283,33,0 chrVII 324280 . T C 248 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=10.33;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:33:281,33,0 chrVII 324283 . T C 255 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=9.44;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:288,33,0 chrVII 324296 . A T 521 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;QD=12.12;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:554,60,0 chrVII 324306 . A C 636 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=12.00;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:669,78,0 chrVII 324307 . G A 678 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=12.79;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:711,78,0 chrVII 324328 . C G 1269 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=16.92;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1302,150,0 chrVII 324427 . G A 1058 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=0;QD=17.34;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1091,129,0 chrVII 324430 . A G 924 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=9.700;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=0;MQRankSum=0.000;QD=16.50;ReadPosRankSum=1.670;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:99:957,120,0 chrVII 324432 . A G 845 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=10.170;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=0;MQRankSum=-1.199;QD=16.25;ReadPosRankSum=1.599;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,51:52:99:878,111,0 chrVII 324443 . T C 774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=0;MQRankSum=-1.880;QD=14.88;ReadPosRankSum=2.355;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:807,102,0 chrVII 324452 . T C 591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.594;QD=11.82;ReadPosRankSum=1.525;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:78:624,78,0 chrVII 324507 . C T 708 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;QD=17.27;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:741,84,0 chrVII 324517 . G A 696 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=18.32;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:729,84,0 chrVII 324535 . C A 929 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=20.20;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:962,108,0 chrVII 324547 . G T 324 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=7.90;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:42:357,42,0 chrVII 324572 . C A 239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=49;Dels=0.00;FS=13.791;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=0;MQRankSum=-2.835;QD=4.88;ReadPosRankSum=-4.838;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:23,26:49:33:272,33,0 chrVII 324601 . G T 1115 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;QD=13.77;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1148,138,0 chrVII 324620 . A G 1532 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=15.17;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1565,189,0 chrVII 324640 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;QD=14.34;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1496,180,0 chrVII 324648 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;QD=14.15;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1462,168,0 chrVII 324676 . C T 1209 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=12.21;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1242,141,0 chrVII 324723 . T C 536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;MQRankSum=0.202;QD=6.96;ReadPosRankSum=1.687;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:66:569,66,0 chrVII 324741 . T A 682 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;MQRankSum=0.365;QD=8.97;ReadPosRankSum=1.687;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:81:715,81,0 chrVII 324746 . C T 541 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.474;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;MQRankSum=-0.563;QD=7.21;ReadPosRankSum=2.857;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:5,70:75:66:574,66,0 chrVII 324749 . T C 533 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.715;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=-0.174;QD=7.72;ReadPosRankSum=3.692;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:5,64:69:66:566,66,0 chrVII 324750 . T A 530 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.280;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=-1.493;QD=7.68;ReadPosRankSum=3.692;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:5,64:69:66:563,66,0 chrVII 324754 . C T 548 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.632;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;MQRankSum=-1.163;QD=7.03;ReadPosRankSum=3.590;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:5,73:78:66:581,66,0 chrVII 324789 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.95;MQ0=0;QD=14.45;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1261,147,0 chrVII 324799 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=14.77;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1333,162,0 chrVII 324805 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.7981;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=17.19;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1580,180,0 chrVII 324837 . A C 2369 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=19.58;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2402,279,0 chrVII 324905 . T C 2899 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=22.65;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2932,333,0 chrVII 324920 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;QD=22.98;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2836,312,0 chrVII 324953 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=23.08;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2779,303,0 chrVII 325035 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=23.59;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2345,264,0 chrVII 325049 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=24.08;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2248,252,0 chrVII 325050 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=22.87;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2114,249,0 chrVII 325096 . T A 1552 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=17.84;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1585,180,0 chrVII 325115 . A G 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=53.2016;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;MQRankSum=-1.628;QD=14.68;ReadPosRankSum=2.384;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1134,132,0 chrVII 325136 . C T 909 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=14.66;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:942,102,0 chrVII 325152 . A G 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;MQRankSum=-0.619;QD=15.88;ReadPosRankSum=1.670;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:938,108,0 chrVII 325191 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=16.79;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1343,153,0 chrVII 325209 . A T 1387 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=16.71;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1420,159,0 chrVII 325221 . A T 1418 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;QD=15.58;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1451,165,0 chrVII 325246 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=13.17;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1179,138,0 chrVII 325250 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=13.79;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1205,138,0 chrVII 325257 . A T 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=4.367;HaplotypeScore=49.9843;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;MQRankSum=0.042;QD=12.80;ReadPosRankSum=1.690;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1083,126,0 chrVII 325283 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=9.32;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:87:788,87,0 chrVII 325306 . G A 654 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=8.61;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:78:687,78,0 chrVII 325307 . T A 629 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=8.28;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:75:662,75,0 chrVII 325313 . A G 621 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=74;Dels=0.00;FS=8.052;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=1.683;QD=8.39;ReadPosRankSum=2.383;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:75:654,75,0 chrVII 325329 . A T 730 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=9.12;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:90:763,90,0 chrVII 325341 . G A 859 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=10.11;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:892,99,0 chrVII 325354 . A G 952 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=10.58;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:985,114,0 chrVII 325363 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=12.04;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1165,129,0 chrVII 325726 . C A 2044 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.86;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2077,231,0 chrVII 325752 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.66;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2329,261,0 chrVII 325784 . A G 2453 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2267;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.79;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2486,279,0 chrVII 325875 . A G 2910 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.38;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2943,336,0 chrVII 326015 . G A 1829 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.27;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1862,204,0 chrVII 326056 . C A 1547 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.63;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1580,174,0 chrVII 326290 . C T 129.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=9.1115;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=6.46;SB=-7.907e+01 GT:AD:DP:GQ:PL 1/1:0,19:20:18:162,18,0 chrVII 326922 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0813;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=24.21;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3873,450,0 chrVII 326953 . C G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.117;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.763;QD=24.15;ReadPosRankSum=1.498;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3309,346,0 chrVII 327125 . G C 2619 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.69;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2652,303,0 chrVII 327148 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=19.91;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2561,282,0 chrVII 327158 . A G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=123;Dels=0.00;FS=10.539;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.303;QD=17.30;ReadPosRankSum=2.908;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:3,117:123:99:2161,246,0 chrVII 327277 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-1.165;QD=23.03;ReadPosRankSum=1.672;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2727,312,0 chrVII 327346 . C G 2799 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.43;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2832,327,0 chrVII 327366 . T C 2305 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.74;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2338,276,0 chrVII 327595 . T G 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.000;QD=18.72;ReadPosRankSum=1.683;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2710,309,0 chrVII 327680 . T G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.33;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3305,372,0 chrVII 327683 . G T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.11;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3317,369,0 chrVII 327726 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.50;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2678,297,0 chrVII 327741 . C A 2801 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.96;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:2834,309,0 chrVII 327931 . C A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.4409;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=22.97;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3423,384,0 chrVII 327962 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=23.50;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3361,390,0 chrVII 328052 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=22.48;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3552,411,0 chrVII 328069 . T A 2969 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=21.21;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3002,339,0 chrVII 328195 . C G 43.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=10.99;SB=-4.421e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:76,9,0 chrVII 328270 . T G 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.04;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:131,15,0 chrVII 328273 . T G 98.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=0.747;QD=12.28;ReadPosRankSum=0.747;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:15:131,15,0 chrVII 328277 . G C 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.91;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:128,15,0 chrVII 328300 . G A 155.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.51;SB=-2.906e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:188,21,0 chrVII 328371 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=1.24;SB=-4.977e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:51,6,0 chrVII 328382 . C T 51.97 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=2.36;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:84,9,0 chrVII 328430 . T A 409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;MQRankSum=-1.450;QD=8.35;ReadPosRankSum=1.662;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:51:442,51,0 chrVII 328436 . A T 551 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=9.84;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:69:584,69,0 chrVII 328514 . G A 703 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=19.00;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:736,84,0 chrVII 328520 . C T 716 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=18.84;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:749,84,0 chrVII 328535 . T G 550 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=14.10;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:72:583,72,0 chrVII 328552 . C G 649 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=13.81;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:87:682,87,0 chrVII 328565 . T A 601 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;MQRankSum=0.762;QD=12.02;ReadPosRankSum=1.525;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:75:634,75,0 chrVII 328570 . C T 604 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=9.74;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:75:637,75,0 chrVII 328574 . C T 1063 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=15.87;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1096,129,0 chrVII 328715 . A G 776 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=50.3022;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=14.37;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:93:809,93,0 chrVII 328743 . T C 923 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=57.0240;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;QD=14.42;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:956,111,0 chrVII 328810 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=8.5486;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=22.48;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1944,216,0 chrVII 328846 . T C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.136;QD=19.91;ReadPosRankSum=1.654;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1845,213,0 chrVII 328862 . G C 1554 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=18.72;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1587,183,0 chrVII 328866 . A C 1576 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=17.91;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1609,183,0 chrVII 329009 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.17;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2498,273,0 chrVII 329109 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.2894;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=1.084;QD=21.35;ReadPosRankSum=1.665;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3374,381,0 chrVII 329347 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.55;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2619,297,0 chrVII 329366 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.590;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.704;QD=20.07;ReadPosRankSum=1.678;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2622,300,0 chrVII 329570 . A G 2255 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.50;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2288,264,0 chrVII 329667 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.51;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3386,372,0 chrVII 330639 . A C 4674.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4674,537,0 chrVII 330839 . G C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3467,405,0 chrVII 331345 . G A 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.282;QD=19.65;ReadPosRankSum=2.158;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2706,303,0 chrVII 331346 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=135;Dels=0.01;FS=4.078;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.899;QD=19.18;ReadPosRankSum=1.498;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2622,303,0 chrVII 331760 . T G 5394.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5394,615,0 chrVII 332360 . G A 3926.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.88;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3926,447,0 chrVII 332424 . G C 3889.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.2348;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.48;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3889,447,0 chrVII 332532 . T C 2895 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.8499;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.10;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2928,333,0 chrVII 332537 . G A 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.5547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.049;QD=18.41;ReadPosRankSum=0.412;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2758,303,0 chrVII 332582 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.27;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3406,375,0 chrVII 332753 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.35;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3001,330,0 chrVII 333068 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=3.146;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.903;QD=22.06;ReadPosRankSum=1.690;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3618,417,0 chrVII 333182 . C A 4580.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.02;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4580,501,0 chrVII 333218 . G A 4569.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.56;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4569,492,0 chrVII 333389 . G T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.3517;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.30;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4817,534,0 chrVII 333509 . A G 5538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=231;Dels=0.00;FS=3.183;HaplotypeScore=9.1166;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.262;QD=23.97;ReadPosRankSum=1.717;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5538,630,0 chrVII 333536 . G A 4990.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.5216;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.00;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4990,555,0 chrVII 333755 . T C 3718.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.5712;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.89;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3718,438,0 chrVII 333791 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.1995;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.496;QD=22.45;ReadPosRankSum=-1.676;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4176,459,0 chrVII 334340 . G A 3076 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3109,339,0 chrVII 334584 . T C 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.7586;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-1.015;QD=21.39;ReadPosRankSum=2.287;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:2001,231,0 chrVII 334633 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=23.39;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3238,369,0 chrVII 334704 . T C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=137;Dels=0.00;FS=2.677;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=0.913;QD=20.70;ReadPosRankSum=2.341;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2869,330,0 chrVII 334767 . T A 1319 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;QD=10.72;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1352,147,0 chrVII 334768 . T G 1311 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=10.75;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1344,153,0 chrVII 334769 . T A 1357 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=11.21;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1390,150,0 chrVII 334770 . T A 1335 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;MQRankSum=-0.880;QD=10.94;ReadPosRankSum=1.704;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1368,150,0 chrVII 334808 . A G 1498 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=10.05;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1531,171,0 chrVII 334812 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=9.90;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1567,177,0 chrVII 334832 . A G 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=0.067;QD=12.71;ReadPosRankSum=1.710;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2016,228,0 chrVII 334871 . C A 2831 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7287;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.26;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2864,321,0 chrVII 334897 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.875;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.938;QD=18.90;ReadPosRankSum=1.708;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2755,321,0 chrVII 334918 . T G 2449 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=18.14;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2482,279,0 chrVII 334948 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=16.40;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2182,252,0 chrVII 335095 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.643;QD=22.40;ReadPosRankSum=1.710;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3561,411,0 chrVII 335140 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.41;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3631,414,0 chrVII 335182 . A G 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=4.386;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=1.039;QD=20.76;ReadPosRankSum=1.683;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2940,330,0 chrVII 335193 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.01;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2828,309,0 chrVII 335215 . T C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.155;QD=17.08;ReadPosRankSum=1.613;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:2561,291,0 chrVII 335555 . A G 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=214;Dels=0.00;FS=3.027;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.935;QD=22.47;ReadPosRankSum=2.415;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4809,546,0 chrVII 335583 . A G 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=204;Dels=0.00;FS=9.161;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.894;QD=22.16;ReadPosRankSum=3.392;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4520,510,0 chrVII 335771 . A G 7238.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.91;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:7238,813,0 chrVII 335798 . A G 6806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=304;Dels=0.00;FS=8.769;HaplotypeScore=3.4891;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.746;QD=22.39;ReadPosRankSum=2.401;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:2,299:304:99:6806,780,0 chrVII 335821 . C T 6137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.312;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.447;QD=21.46;ReadPosRankSum=-0.043;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:1,282:286:99:6137,672,0 chrVII 335873 . C T 6221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.012;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=17.6662;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.664;QD=22.14;ReadPosRankSum=0.093;SB=-3.281e+03 GT:AD:DP:GQ:PL 1/1:1,278:281:99:6221,664,0 chrVII 335943 . C T 8872.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=8.7987;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.16;SB=-4.630e+03 GT:AD:DP:GQ:PL 1/1:0,381:383:99:8872,981,0 chrVII 335970 . A G 7686.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.755;DP=371;Dels=0.00;FS=11.435;HaplotypeScore=9.7252;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.019;QD=20.72;ReadPosRankSum=3.675;SB=-4.211e+03 GT:AD:DP:GQ:PL 1/1:5,364:371:99:7686,870,0 chrVII 335980 . T C 7015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=355;Dels=0.00;FS=7.246;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.641;QD=19.76;ReadPosRankSum=2.422;SB=-3.961e+03 GT:AD:DP:GQ:PL 1/1:2,352:355:99:7015,821,0 chrVII 336229 . C G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.01;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3934,456,0 chrVII 336313 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2703,300,0 chrVII 336397 . C G 3704.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.86;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3704,426,0 chrVII 336889 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.13;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2531,285,0 chrVII 336959 . A C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=4.234;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.641;QD=23.64;ReadPosRankSum=1.702;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2728,315,0 chrVII 337363 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.092;QD=24.18;ReadPosRankSum=1.709;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3651,411,0 chrVII 337618 . A G 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.668;QD=20.13;ReadPosRankSum=2.417;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3033,345,0 chrVII 338511 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=3.352;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.233;QD=21.90;ReadPosRankSum=1.706;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2968,342,0 chrVII 338625 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.31;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3870,450,0 chrVII 338763 . C G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.76;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4097,465,0 chrVII 338820 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=179;Dels=0.00;FS=2.582;HaplotypeScore=12.5763;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.899;QD=21.08;ReadPosRankSum=2.395;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3773,432,0 chrVII 338951 . T A 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=159;Dels=0.00;FS=7.415;HaplotypeScore=8.6312;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.023;QD=23.53;ReadPosRankSum=2.403;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3742,411,0 chrVII 339102 . C A 2711 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.23;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2744,303,0 chrVII 339118 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.07;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2823,303,0 chrVII 339185 . A T 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.304;QD=21.07;ReadPosRankSum=1.662;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3173,348,0 chrVII 339603 . T C 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.819;QD=20.15;ReadPosRankSum=1.669;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2249,255,0 chrVII 339606 . G T 2271 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.92;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2304,261,0 chrVII 339639 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.58;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2422,264,0 chrVII 339732 . G T 2330 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.18;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2363,261,0 chrVII 339750 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.03;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1993,231,0 chrVII 339776 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.84;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2315,252,0 chrVII 339874 . A C 2724 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.0313;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.12;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2757,315,0 chrVII 340068 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.69;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3333,360,0 chrVII 340131 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.171;QD=22.61;ReadPosRankSum=1.708;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3269,375,0 chrVII 340170 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.12;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2688,300,0 chrVII 340382 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2266,246,0 chrVII 340698 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.87;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4344,489,0 chrVII 340773 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.16;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3544,393,0 chrVII 340800 . A G 3108 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.58;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3141,360,0 chrVII 340808 . G C 2881 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.29;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2914,333,0 chrVII 340809 . C T 2929 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.63;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2962,333,0 chrVII 341166 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.37;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3602,417,0 chrVII 341429 . T G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.09;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3394,384,0 chrVII 341659 . C A 2140 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.77;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2173,246,0 chrVII 341785 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1476,159,0 chrVII 341925 . G A 860 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=23.89;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:893,102,0 chrVII 342055 . A C 1799 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,73:78:99:1832,210,0 chrVII 342498 . T C 2140 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.45;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2173,252,0 chrVII 342704 . A G 2236 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2269,267,0 chrVII 342962 . A G 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.689;QD=14.65;ReadPosRankSum=2.362;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1264,141,0 chrVII 343251 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.97;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3596,393,0 chrVII 343639 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.06;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3077,342,0 chrVII 343687 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3888,423,0 chrVII 343768 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.0901;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=20.85;ReadPosRankSum=0.660;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3502,384,0 chrVII 343914 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.192;QD=22.94;ReadPosRankSum=1.705;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2924,336,0 chrVII 343955 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.88;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2851,312,0 chrVII 344198 . A G 2366 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.39;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2399,273,0 chrVII 344201 . T C 2340 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.72;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2373,267,0 chrVII 344229 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.155;QD=19.29;ReadPosRankSum=1.632;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2715,306,0 chrVII 344309 . T G 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=198;Dels=0.00;FS=5.977;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-0.605;QD=18.82;ReadPosRankSum=2.944;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:3,193:198:99:3727,423,0 chrVII 344348 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=17.04;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3306,378,0 chrVII 344382 . A G 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=163;Dels=0.00;FS=7.216;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=-1.006;QD=15.88;ReadPosRankSum=2.419;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,158:163:99:2621,309,0 chrVII 344546 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=18.80;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3097,366,0 chrVII 344550 . T C 3065 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=19.16;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3098,372,0 chrVII 344881 . A G 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.765;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.456;QD=22.88;ReadPosRankSum=1.695;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4301,489,0 chrVII 345010 . T C 3198 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3231,366,0 chrVII 345064 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.14;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2521,279,0 chrVII 345315 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=22.46;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1897,207,0 chrVII 345331 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.97;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1551,174,0 chrVII 345399 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=14.69;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1722,186,0 chrVII 345412 . A G 1499 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=12.81;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1532,180,0 chrVII 345423 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=13.27;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1652,186,0 chrVII 345433 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=12.41;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1646,183,0 chrVII 345438 . A T 1722 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=0;QD=13.15;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1755,189,0 chrVII 345471 . T C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=123;Dels=0.00;FS=3.042;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;MQRankSum=-1.825;QD=14.76;ReadPosRankSum=2.329;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:1848,213,0 chrVII 345511 . C A 1957 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=15.91;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1990,219,0 chrVII 345912 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=3.111;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.045;QD=18.32;ReadPosRankSum=1.706;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2451,279,0 chrVII 345925 . T C 2401 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.76;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2434,285,0 chrVII 345961 . T C 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=127;Dels=0.02;FS=2.883;HaplotypeScore=15.2894;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.704;QD=19.90;ReadPosRankSum=2.370;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2560,297,0 chrVII 346070 . T C 2813 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.8668;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.81;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2846,330,0 chrVII 346166 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.47;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3955,432,0 chrVII 346250 . T C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.226;QD=22.85;ReadPosRankSum=1.625;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3701,429,0 chrVII 346294 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=162;Dels=0.00;FS=6.098;HaplotypeScore=11.3883;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.869;QD=22.57;ReadPosRankSum=2.931;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3656,420,0 chrVII 346793 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2857,312,0 chrVII 346985 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.19;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3270,357,0 chrVII 347168 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.53;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4095,453,0 chrVII 347223 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.90;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3343,375,0 chrVII 347274 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.26;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3698,408,0 chrVII 347562 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.15;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2550,276,0 chrVII 347577 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=117;Dels=0.00;FS=2.956;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.230;QD=20.21;ReadPosRankSum=2.408;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2398,270,0 chrVII 347679 . A T 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=200;Dels=0.00;FS=5.759;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.020;QD=21.07;ReadPosRankSum=2.834;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4214,468,0 chrVII 347682 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.63;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3906,441,0 chrVII 348496 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.92;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3339,363,0 chrVII 348923 . T G 2191 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.59;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2224,258,0 chrVII 349044 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.98;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1901,210,0 chrVII 349092 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=17.73;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1912,216,0 chrVII 349101 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=112;Dels=0.00;FS=3.802;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.225;QD=18.22;ReadPosRankSum=1.700;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,107:112:99:2074,237,0 chrVII 349165 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=4.030;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.497;QD=19.81;ReadPosRankSum=1.705;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2589,297,0 chrVII 349285 . C T 2284 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.31;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2317,255,0 chrVII 349962 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.053;QD=23.98;ReadPosRankSum=-0.924;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3933,419,0 chrVII 350350 . A C 2093 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2126,243,0 chrVII 350521 . T A 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=80;Dels=0.00;FS=2.846;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.169;QD=21.57;ReadPosRankSum=2.388;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1759,198,0 chrVII 350649 . T C 2464 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.00;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2497,288,0 chrVII 351015 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=127;Dels=0.00;FS=4.600;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;MQRankSum=0.643;QD=23.46;ReadPosRankSum=1.676;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:3013,339,0 chrVII 351063 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.549;QD=24.17;ReadPosRankSum=1.704;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3006,342,0 chrVII 351287 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3613,417,0 chrVII 351684 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3495,381,0 chrVII 351949 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3598,399,0 chrVII 352151 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.76;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4063,444,0 chrVII 352206 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.6405;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.91;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3505,402,0 chrVII 352489 . A G 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=148;Dels=0.00;FS=3.030;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.095;QD=20.45;ReadPosRankSum=2.383;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3059,348,0 chrVII 352538 . G C 2848 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.37;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2881,327,0 chrVII 352554 . G C 2853 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.77;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2886,327,0 chrVII 352556 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.20;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2818,321,0 chrVII 352605 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.42;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2933,327,0 chrVII 352658 . T C 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=7.863;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.446;QD=22.15;ReadPosRankSum=2.384;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2558,294,0 chrVII 352838 . T C 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=110;Dels=0.00;FS=5.955;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.658;QD=18.41;ReadPosRankSum=2.862;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:3,106:110:99:2058,234,0 chrVII 352844 . G T 2295 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.62;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2328,255,0 chrVII 352964 . T C 2755 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8142;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.22;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2788,321,0 chrVII 355166 . C A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=10.6520;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.57;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3633,402,0 chrVII 355193 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.01;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3911,444,0 chrVII 355292 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.28;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2796,303,0 chrVII 356141 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.5961;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.74;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3494,393,0 chrVII 356393 . A T 2472 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.27;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2505,273,0 chrVII 356416 . C A 2376 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.0544;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.03;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2409,261,0 chrVII 356588 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.73;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3319,366,0 chrVII 356663 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.24;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3211,351,0 chrVII 356669 . C T 3177 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.80;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3210,363,0 chrVII 357041 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.02;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1460,159,0 chrVII 357061 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.39;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1468,168,0 chrVII 357149 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6848;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.57;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1888,216,0 chrVII 357269 . A G 1798 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.66;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1831,210,0 chrVII 357451 . C G 3401.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1662;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.52;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3401,378,0 chrVII 357473 . A G 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=9.301;HaplotypeScore=5.8446;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.822;QD=22.20;ReadPosRankSum=2.415;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3208,363,0 chrVII 357508 . T C 2130 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.05;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2163,255,0 chrVII 357517 . A G 2075 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=16.60;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2108,243,0 chrVII 357539 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3241;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.95;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2456,267,0 chrVII 357689 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.55;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3968,450,0 chrVII 358102 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=4.493;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.461;QD=21.09;ReadPosRankSum=1.711;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:3565,417,0 chrVII 358124 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=165;Dels=0.01;FS=2.585;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.908;QD=20.70;ReadPosRankSum=2.687;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3416,393,0 chrVII 358168 . A T 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=112;Dels=0.00;FS=4.318;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.033;QD=21.22;ReadPosRankSum=1.835;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2410,273,0 chrVII 358237 . T C 1983 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.87;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2016,228,0 chrVII 358358 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.20;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2631,291,0 chrVII 358522 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.5638;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.29;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2545,288,0 chrVII 358656 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.53;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3164,351,0 chrVII 358777 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3720,414,0 chrVII 358861 . T G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=153;Dels=0.00;FS=3.895;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.593;QD=22.97;ReadPosRankSum=1.709;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3514,402,0 chrVII 359147 . T A 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=121;Dels=0.02;FS=15.360;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.239;QD=19.87;ReadPosRankSum=2.718;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2437,276,0 chrVII 359148 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.83;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2472,279,0 chrVII 359214 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.42;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1646,186,0 chrVII 359313 . T G 1975 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.94;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2008,240,0 chrVII 359394 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.72;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3049,351,0 chrVII 360075 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1713,189,0 chrVII 360211 . T C 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.608;DP=81;Dels=0.00;FS=2.611;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.279;QD=21.85;ReadPosRankSum=2.912;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:3,77:81:99:1803,207,0 chrVII 360287 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.02;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2675,300,0 chrVII 360441 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=165;Dels=0.00;FS=2.937;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.737;QD=22.40;ReadPosRankSum=2.420;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3696,417,0 chrVII 360498 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=190;Dels=0.00;FS=2.984;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.412;QD=21.91;ReadPosRankSum=2.397;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4162,471,0 chrVII 360816 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.82;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4190,471,0 chrVII 360861 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=181;Dels=0.00;FS=9.478;HaplotypeScore=10.4639;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.646;QD=21.45;ReadPosRankSum=2.961;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:4,176:181:99:3883,456,0 chrVII 360930 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.58;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2970,336,0 chrVII 360942 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.45;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2837,321,0 chrVII 361541 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.89;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3342,366,0 chrVII 361547 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=157;Dels=0.00;FS=5.999;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.110;QD=20.53;ReadPosRankSum=2.955;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3256,372,0 chrVII 361704 . C G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.25;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,152:158:99:3358,387,0 chrVII 361880 . A G 2095 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2128,243,0 chrVII 362034 . A G 952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=45;Dels=0.00;FS=7.429;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;MQRankSum=-0.141;QD=21.16;ReadPosRankSum=2.282;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:2,42:45:99:985,114,0 chrVII 362066 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=22.09;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1292,144,0 chrVII 362105 . A T 1290 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1323,147,0 chrVII 363325 . A G 5600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=244;Dels=0.00;FS=10.038;HaplotypeScore=17.5288;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.004;QD=22.95;ReadPosRankSum=2.963;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:3,240:244:99:5600,642,0 chrVII 363542 . A G 4983.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.7800;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.35;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4983,567,0 chrVII 363731 . T C 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.620;HaplotypeScore=6.7154;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.517;QD=21.51;ReadPosRankSum=1.541;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3152,372,0 chrVII 363924 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.23;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2572,291,0 chrVII 363931 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=21.81;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2563,282,0 chrVII 363968 . A G 2160 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.39;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2193,249,0 chrVII 364007 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.20;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2031,228,0 chrVII 364128 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.00;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1383,153,0 chrVII 364144 . T A 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=62.3204;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-0.666;QD=15.73;ReadPosRankSum=1.688;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1260,144,0 chrVII 364587 . A G 3379.01 filter AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.9699;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=33;QD=14.20;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:6,232:238:99:3379,393,0 chrVII 364650 . C G 1507 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=27;QD=13.70;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1540,180,0 chrVII 364881 . A G 1071 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.95;MQ0=29;QD=11.27;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:10,85:95:99:1104,126,0 chrVII 364893 . T C 2027 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=127;Dels=0.00;FS=6.704;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=24;MQRankSum=-1.026;QD=15.96;ReadPosRankSum=1.631;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:9,118:127:99:2060,231,0 chrVII 365020 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=14.32;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1852,204,0 chrVII 365023 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=12.30;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1570,183,0 chrVII 365049 . A G 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=6.619;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;MQRankSum=-1.321;QD=12.70;ReadPosRankSum=1.664;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1316,147,0 chrVII 365054 . T C 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;MQRankSum=-0.601;QD=12.10;ReadPosRankSum=1.626;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1219,141,0 chrVII 365076 . G A 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;MQRankSum=1.374;QD=11.75;ReadPosRankSum=1.015;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1055,117,0 chrVII 365097 . C T 1190 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=13.52;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1223,138,0 chrVII 365109 . T C 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-0.221;QD=14.71;ReadPosRankSum=1.695;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1416,162,0 chrVII 365268 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=124;Dels=0.00;FS=3.039;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-0.132;QD=21.93;ReadPosRankSum=2.389;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,119:124:99:2752,312,0 chrVII 365290 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=22.84;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2979,330,0 chrVII 365699 . T C 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=0.637;QD=15.30;ReadPosRankSum=2.308;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1364,162,0 chrVII 365727 . A G 554 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=7.10;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:66:587,66,0 chrVII 365766 . C T 1707 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=15.81;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1740,186,0 chrVII 365788 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.217;QD=19.14;ReadPosRankSum=1.705;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2483,285,0 chrVII 365991 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.57;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2990,333,0 chrVII 366038 . A T 2768 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.46;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2801,321,0 chrVII 366072 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.16;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2190,246,0 chrVII 366235 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.30;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1552,171,0 chrVII 366252 . A T 1734 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.45;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1767,195,0 chrVII 366589 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.11;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2737,297,0 chrVII 366666 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.27;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1675,189,0 chrVII 366675 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.50;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1513,171,0 chrVII 366762 . A G 1460 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.72;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1493,171,0 chrVII 367032 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=220;Dels=0.00;FS=3.882;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.653;QD=21.35;ReadPosRankSum=1.685;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4698,546,0 chrVII 367179 . T G 3071 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.06;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3104,354,0 chrVII 367403 . T A 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.647;QD=22.86;ReadPosRankSum=1.694;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4161,450,0 chrVII 367737 . T C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=109;Dels=0.00;FS=9.302;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.035;QD=19.40;ReadPosRankSum=2.404;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,105:109:99:2148,243,0 chrVII 367741 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.51;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2179,243,0 chrVII 367828 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.5243;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.37;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2718,297,0 chrVII 367918 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.26;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2731,309,0 chrVII 368439 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.1778;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.52;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4735,558,0 chrVII 368488 . T C 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=210;Dels=0.00;FS=13.466;HaplotypeScore=24.4963;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;MQRankSum=0.630;QD=21.15;ReadPosRankSum=2.966;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4442,522,0 chrVII 368576 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=11.6251;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.55;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3580,402,0 chrVII 369167 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.34;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3945,432,0 chrVII 369600 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.76;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3826,432,0 chrVII 369666 . G T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.31;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3753,408,0 chrVII 369784 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.79;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3282,375,0 chrVII 369862 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=129;Dels=0.00;FS=9.445;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.242;QD=20.39;ReadPosRankSum=2.852;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2663,303,0 chrVII 369881 . C A 2634 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.41;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2667,294,0 chrVII 369971 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.15;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3453,393,0 chrVII 370030 . A G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=1.019;QD=21.12;ReadPosRankSum=1.707;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2906,333,0 chrVII 370045 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=18.02;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2610,294,0 chrVII 370051 . G T 2270 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=16.45;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2303,252,0 chrVII 370075 . T C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=0.522;QD=16.68;ReadPosRankSum=1.708;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2469,282,0 chrVII 370134 . A G 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=3.099;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.639;QD=21.10;ReadPosRankSum=1.686;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3177,360,0 chrVII 370360 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=148;Dels=0.00;FS=7.051;HaplotypeScore=16.3869;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.154;QD=22.32;ReadPosRankSum=2.367;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3303,375,0 chrVII 370393 . A C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6174;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.569;QD=22.55;ReadPosRankSum=-0.664;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3315,378,0 chrVII 370469 . G T 2994 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.19;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3027,342,0 chrVII 370489 . A C 3178 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.37;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3211,369,0 chrVII 370641 . G T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.33;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3975,438,0 chrVII 370822 . G A 5259.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.47;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5259,573,0 chrVII 370870 . T G 5288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=237;Dels=0.00;FS=5.324;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.750;QD=22.31;ReadPosRankSum=2.937;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:5288,603,0 chrVII 370897 . G T 5553.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=23.0395;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.44;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5553,615,0 chrVII 371116 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=194;Dels=0.00;FS=5.689;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.596;QD=19.55;ReadPosRankSum=1.622;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,188:194:99:3792,432,0 chrVII 371244 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.49;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2955,324,0 chrVII 371263 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=16.17;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2345,255,0 chrVII 371265 . A G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=146;Dels=0.00;FS=8.720;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-2.608;QD=15.02;ReadPosRankSum=3.349;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:4,140:146:99:2226,258,0 chrVII 371335 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.83;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3624,396,0 chrVII 371489 . T G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=170;Dels=0.00;FS=6.095;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.613;QD=24.05;ReadPosRankSum=1.149;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:4088,453,0 chrVII 371625 . G A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.0237;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.82;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4060,456,0 chrVII 372033 . G C 4783.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4783,552,0 chrVII 372139 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3903,423,0 chrVII 372223 . T G 5336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=251;Dels=0.00;FS=3.622;HaplotypeScore=12.2143;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.456;QD=21.26;ReadPosRankSum=1.663;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5336,597,0 chrVII 372417 . G A 4848.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4848,528,0 chrVII 372503 . C A 4911.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.84;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4911,537,0 chrVII 372717 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4423,486,0 chrVII 372857 . G A 4950.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.7348;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.46;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4950,561,0 chrVII 372926 . A C 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=193;Dels=0.00;FS=9.182;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.175;QD=20.96;ReadPosRankSum=2.372;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,187:193:99:4045,465,0 chrVII 373531 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.41;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3816,432,0 chrVII 373580 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=142;Dels=0.00;FS=3.040;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.497;QD=24.04;ReadPosRankSum=2.398;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3414,390,0 chrVII 373624 . C T 3986.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.17;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3986,435,0 chrVII 373646 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.63;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3980,447,0 chrVII 373713 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.85;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3409,390,0 chrVII 373766 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4089;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.82;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4198,468,0 chrVII 373940 . C G 3402.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7625;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.69;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3402,387,0 chrVII 373957 . A T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.45;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3394,369,0 chrVII 373958 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.28;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3364,366,0 chrVII 374507 . T G 4346.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1607;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.37;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4346,492,0 chrVII 374582 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.4261;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.632;QD=20.94;ReadPosRankSum=1.712;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3727,426,0 chrVII 374606 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.460;QD=21.79;ReadPosRankSum=1.622;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3464,387,0 chrVII 374962 . C G 3532.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.28;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3532,399,0 chrVII 374973 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.03;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3526,396,0 chrVII 375001 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.65;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4089,462,0 chrVII 375036 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.6295;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.80;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4579,504,0 chrVII 375227 . A T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.3223;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.75;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4005,453,0 chrVII 375494 . G T 4837.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4837,540,0 chrVII 375933 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2776,312,0 chrVII 376112 . T A 3184 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.76;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3217,345,0 chrVII 376282 . T G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=146;Dels=0.00;FS=6.294;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.254;QD=22.95;ReadPosRankSum=2.399;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3351,375,0 chrVII 376314 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=15.2392;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.55;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3450,384,0 chrVII 376364 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=3.921;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.496;QD=23.55;ReadPosRankSum=1.676;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4357,492,0 chrVII 376409 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7417;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4092,462,0 chrVII 376592 . A G 4235.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.14;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4235,501,0 chrVII 377296 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.2149;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.12;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2738,303,0 chrVII 378078 . C A 5147.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.95;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5147,567,0 chrVII 378346 . G T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.42;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3390,366,0 chrVII 378347 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=19.85;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3315,366,0 chrVII 378538 . T A 5541.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.20;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5541,612,0 chrVII 379046 . C T 6163.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=12.9842;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.70;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6163,684,0 chrVII 379420 . T C 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=180;Dels=0.00;FS=3.015;HaplotypeScore=9.8013;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.318;QD=21.22;ReadPosRankSum=2.367;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3820,432,0 chrVII 379480 . C G 3650.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.62;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3650,426,0 chrVII 379579 . T C 3089 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.16;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3122,357,0 chrVII 379601 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.36;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3151,339,0 chrVII 379657 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.82;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2729,303,0 chrVII 379677 . T C 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=117;Dels=0.00;FS=13.440;HaplotypeScore=4.1445;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.174;QD=18.38;ReadPosRankSum=2.887;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2183,252,0 chrVII 379743 . A G 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.196;QD=20.48;ReadPosRankSum=1.691;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1774,204,0 chrVII 379937 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=104;Dels=0.00;FS=3.003;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.347;QD=21.68;ReadPosRankSum=2.306;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2288,264,0 chrVII 380073 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.412;QD=24.18;ReadPosRankSum=1.691;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4062,462,0 chrVII 380141 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.85;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2967,321,0 chrVII 380177 . A T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.24;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3292,366,0 chrVII 380323 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.15;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3342,369,0 chrVII 380368 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.679;QD=21.61;ReadPosRankSum=1.706;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2885,330,0 chrVII 380449 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=1;QD=22.71;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3054,333,0 chrVII 380582 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2863,312,0 chrVII 380720 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.8594;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.12;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3484,399,0 chrVII 380930 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.254;QD=20.50;ReadPosRankSum=1.643;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2431,276,0 chrVII 381029 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.23;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3062,336,0 chrVII 381313 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3101,339,0 chrVII 381438 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.660;QD=17.07;ReadPosRankSum=1.696;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,95:99:99:1723,195,0 chrVII 381441 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=16.80;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1663,189,0 chrVII 381517 . C G 2291 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=14.3406;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.61;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2324,267,0 chrVII 381897 . G A 4323.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.2245;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.12;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4323,471,0 chrVII 382183 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.55;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4805,543,0 chrVII 382210 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.15;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4329,492,0 chrVII 382476 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.85;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3427,387,0 chrVII 382533 . T A 4220.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.0397;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.39;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4220,459,0 chrVII 382993 . G A 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.043;DP=191;Dels=0.00;FS=4.177;HaplotypeScore=12.2338;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.789;QD=22.65;ReadPosRankSum=0.735;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4326,449,0 chrVII 383186 . A G 3003 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.02;FS=0.000;HaplotypeScore=16.2528;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.98;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3036,348,0 chrVII 383189 . G T 3118 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.02;FS=0.000;HaplotypeScore=12.5313;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.45;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3151,351,0 chrVII 383348 . T C 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=3.024;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.198;QD=22.11;ReadPosRankSum=2.381;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3195,369,0 chrVII 383573 . G T 5106.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.64;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5106,564,0 chrVII 383665 . T C 6038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.836;QD=22.87;ReadPosRankSum=1.693;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:6038,690,0 chrVII 383867 . T C 4770.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.29;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4770,543,0 chrVII 383893 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.70;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4097,480,0 chrVII 383908 . G A 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.127;QD=20.23;ReadPosRankSum=-1.036;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,188:193:99:3904,444,0 chrVII 384183 . C A 5567.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.4372;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.89;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5567,618,0 chrVII 384239 . T C 6052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=277;Dels=0.00;FS=6.424;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.107;QD=21.85;ReadPosRankSum=2.432;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:2,274:277:99:6052,684,0 chrVII 384425 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=234;Dels=0.00;FS=16.201;HaplotypeScore=16.1723;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.151;QD=19.88;ReadPosRankSum=3.371;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:4651,525,0 chrVII 384641 . C A 3049 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.42;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3082,345,0 chrVII 384678 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.66;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2864,321,0 chrVII 384785 . T C 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=118;Dels=0.00;FS=3.040;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=0.284;QD=15.19;ReadPosRankSum=2.408;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:1826,219,0 chrVII 384786 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=15.89;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1908,222,0 chrVII 384832 . A G 3012 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.3909;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.14;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,160:166:99:3045,360,0 chrVII 385141 . A C 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.737;QD=22.20;ReadPosRankSum=1.714;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4351,501,0 chrVII 385194 . C T 3952.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.7431;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.48;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3952,450,0 chrVII 385519 . T C 2043 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;QD=14.19;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2076,237,0 chrVII 385522 . G T 1983 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=13.87;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2016,225,0 chrVII 385525 . A G 1805 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=13.18;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1838,210,0 chrVII 385531 . C T 1795 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=12.73;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1828,204,0 chrVII 385534 . C T 1634 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=12.19;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1667,189,0 chrVII 385540 . A G 1494 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.729;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=1.380;QD=12.66;ReadPosRankSum=0.235;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1527,174,0 chrVII 385542 . T C 1522 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.752;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;MQRankSum=-1.618;QD=12.58;ReadPosRankSum=1.703;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1555,183,0 chrVII 385555 . C A 1415 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=12.98;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1448,162,0 chrVII 385570 . T C 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=8.254;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;MQRankSum=-1.056;QD=16.00;ReadPosRankSum=2.406;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1841,210,0 chrVII 386428 . C T 5457.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=12.1963;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.00;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5457,624,0 chrVII 386494 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=19.66;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4521,495,0 chrVII 386539 . T C 3562.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=244;Dels=0.00;FS=10.458;HaplotypeScore=9.9170;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;MQRankSum=-0.307;QD=14.60;ReadPosRankSum=2.921;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:3,239:244:99:3562,402,0 chrVII 386548 . C A 3506.01 SnpCluster AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=14.86;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3506,387,0 chrVII 386549 . A C 3351.01 SnpCluster AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=14.20;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3351,384,0 chrVII 386557 . A C 3115 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=239;Dels=0.00;FS=9.119;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;MQRankSum=0.040;QD=13.03;ReadPosRankSum=3.424;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:4,235:239:99:3148,357,0 chrVII 386563 . T C 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=238;Dels=0.00;FS=6.113;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;MQRankSum=-0.944;QD=12.16;ReadPosRankSum=2.429;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:2928,348,0 chrVII 386581 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=13.54;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:3025,339,0 chrVII 386593 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=15.39;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:3416,378,0 chrVII 386596 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=14.31;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:3269,384,0 chrVII 386608 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.7553;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=15.63;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:3877,432,0 chrVII 386723 . A T 3088 filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=21.1210;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=13;QD=16.51;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3121,357,0 chrVII 386851 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.89;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4357,495,0 chrVII 386978 . C G 4401.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.093;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=5.4168;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=16;MQRankSum=-0.071;QD=16.55;ReadPosRankSum=-0.298;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:1,259:266:99:4401,488,0 chrVII 386979 . G C 4475.01 filter AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=16;QD=16.89;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,261:265:99:4475,510,0 chrVII 387199 . T C 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.699;DP=218;Dels=0.00;FS=11.407;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.181;QD=20.17;ReadPosRankSum=2.949;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:4398,510,0 chrVII 387637 . T C 7223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=354;Dels=0.00;FS=6.929;HaplotypeScore=19.0604;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.914;QD=20.40;ReadPosRankSum=2.386;SB=-3.851e+03 GT:AD:DP:GQ:PL 1/1:2,347:354:99:7223,839,0 chrVII 387977 . T C 3086 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.53;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3119,354,0 chrVII 388315 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.165;DP=203;Dels=0.00;FS=8.975;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.847;QD=21.38;ReadPosRankSum=3.373;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:4,197:203:99:4341,510,0 chrVII 388627 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8008;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.64;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2773,306,0 chrVII 388864 . T C 719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=72;Dels=0.00;FS=6.208;HaplotypeScore=11.5406;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=-1.613;QD=9.99;ReadPosRankSum=2.747;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:3,65:72:90:752,90,0 chrVII 388889 . T C 1130 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=14.12;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1163,135,0 chrVII 389082 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.93;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3193,357,0 chrVII 389105 . G A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.3224;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.01;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4006,429,0 chrVII 389508 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=150;Dels=0.00;FS=6.349;HaplotypeScore=8.1497;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.025;QD=19.83;ReadPosRankSum=2.417;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3007,351,0 chrVII 389529 . C A 3112 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.5702;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.46;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3145,345,0 chrVII 389751 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.20;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4199,483,0 chrVII 389935 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=166;Dels=0.00;FS=3.888;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.296;QD=21.66;ReadPosRankSum=1.690;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3595,414,0 chrVII 389955 . G C 3478.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.10;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3478,405,0 chrVII 390098 . A C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.796;QD=19.04;ReadPosRankSum=1.713;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3560,408,0 chrVII 390103 . A T 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.530;QD=18.95;ReadPosRankSum=1.608;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3714,420,0 chrVII 390234 . T A 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.628;QD=21.67;ReadPosRankSum=1.711;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3619,402,0 chrVII 390274 . A T 4533.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.0084;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.01;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4533,498,0 chrVII 390472 . C G 4126.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.92;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4126,471,0 chrVII 390727 . T C 2844 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.22;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2877,330,0 chrVII 390921 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.8932;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.244;QD=24.03;ReadPosRankSum=1.688;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3749,423,0 chrVII 391059 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=172;Dels=0.00;FS=6.094;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.241;QD=21.85;ReadPosRankSum=2.888;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3759,423,0 chrVII 391138 . G T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.82;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3423,381,0 chrVII 391186 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=179;Dels=0.00;FS=3.012;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.364;QD=22.79;ReadPosRankSum=2.408;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4079,474,0 chrVII 391249 . G A 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.433;QD=22.69;ReadPosRankSum=-1.083;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4379,486,0 chrVII 391279 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=201;Dels=0.00;FS=7.016;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.290;QD=21.28;ReadPosRankSum=2.388;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4277,489,0 chrVII 391475 . T A 5129.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.90;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5129,561,0 chrVII 391570 . C G 5094.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.6866;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.26;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,213:219:99:5094,582,0 chrVII 391606 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=2.971;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.770;QD=22.21;ReadPosRankSum=2.322;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4286,498,0 chrVII 391624 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=188;Dels=0.00;FS=6.037;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.054;QD=19.91;ReadPosRankSum=2.714;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:3743,435,0 chrVII 391649 . C T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.76;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3616,390,0 chrVII 391859 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.18;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3384,375,0 chrVII 391892 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.09;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3270,363,0 chrVII 392010 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2864,321,0 chrVII 392193 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.597;QD=23.49;ReadPosRankSum=1.705;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3063,348,0 chrVII 392315 . T C 4916.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.95;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4916,567,0 chrVII 392337 . G A 4795.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.73;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4795,514,0 chrVII 392382 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.69;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3289,366,0 chrVII 392993 . T C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.845;QD=22.68;ReadPosRankSum=1.704;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2891,327,0 chrVII 392994 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.61;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3008,327,0 chrVII 393263 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.7250;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.17;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3823,420,0 chrVII 393326 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.514;QD=23.41;ReadPosRankSum=1.710;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3722,426,0 chrVII 393647 . A T 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0960;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.551;QD=21.96;ReadPosRankSum=1.693;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3865,426,0 chrVII 393726 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.03;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3846,420,0 chrVII 393780 . G A 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.488;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.171;QD=20.86;ReadPosRankSum=1.586;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3016,342,0 chrVII 393782 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=143;Dels=0.00;FS=2.999;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.268;QD=20.73;ReadPosRankSum=2.346;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:2998,342,0 chrVII 393940 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=177;Dels=0.00;FS=5.927;HaplotypeScore=12.7694;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;MQRankSum=0.914;QD=22.93;ReadPosRankSum=2.903;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:4058,462,0 chrVII 394219 . T C 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=185;Dels=0.00;FS=8.899;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.156;QD=22.59;ReadPosRankSum=3.413;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:4179,474,0 chrVII 394511 . T A 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=162;Dels=0.00;FS=16.690;HaplotypeScore=23.2487;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;MQRankSum=0.038;QD=12.06;ReadPosRankSum=2.327;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:2,159:162:99:1986,219,0 chrVII 394550 . G C 1402 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=15.9214;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;QD=10.16;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,133:138:99:1435,168,0 chrVII 394643 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=100;Dels=0.00;FS=2.598;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.323;QD=21.47;ReadPosRankSum=2.889;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2180,252,0 chrVII 394661 . A G 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.207;QD=20.47;ReadPosRankSum=1.680;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1384,156,0 chrVII 395136 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=167;Dels=0.00;FS=2.779;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=2.111;QD=22.47;ReadPosRankSum=2.405;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3753,432,0 chrVII 395182 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=169;Dels=0.00;FS=7.767;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.534;QD=22.12;ReadPosRankSum=2.420;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3738,429,0 chrVII 395210 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=156;Dels=0.00;FS=9.374;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.305;QD=22.21;ReadPosRankSum=2.812;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3465,390,0 chrVII 395241 . C G 3615.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.26;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3615,408,0 chrVII 395287 . A G 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.151;QD=22.03;ReadPosRankSum=1.686;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3304,372,0 chrVII 395344 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.14;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3525,387,0 chrVII 395359 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.6200;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=20.68;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3888,429,0 chrVII 395395 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=190;Dels=0.00;FS=6.324;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=0.006;QD=18.54;ReadPosRankSum=2.424;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3522,399,0 chrVII 395404 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.42;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3426,375,0 chrVII 395416 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=18.61;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3350,369,0 chrVII 395553 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1215;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.77;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3288,360,0 chrVII 395608 . G T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=23.22;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4063,453,0 chrVII 395677 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.85;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2895,318,0 chrVII 395752 . G C 1441 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=17.36;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1474,171,0 chrVII 395803 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=17.96;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1398,159,0 chrVII 395815 . A G 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.925;QD=17.46;ReadPosRankSum=2.385;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1360,162,0 chrVII 395825 . A G 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.594;QD=19.20;ReadPosRankSum=1.633;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1377,162,0 chrVII 395869 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.76;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1418,156,0 chrVII 395882 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=18.41;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1285,141,0 chrVII 396010 . G A 1744 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.60;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1777,198,0 chrVII 396018 . T C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.651;QD=17.15;ReadPosRankSum=2.260;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1817,213,0 chrVII 396092 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.87;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2037,222,0 chrVII 396110 . A G 1842 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.42;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1875,213,0 chrVII 396199 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9772;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.21;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3342,366,0 chrVII 396235 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.16;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3696,399,0 chrVII 396269 . A G 2934 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.2226;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.52;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2967,345,0 chrVII 396397 . C G 4025.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.13;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4025,456,0 chrVII 396575 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.3811;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4338,498,0 chrVII 396686 . A T 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=3.543;HaplotypeScore=7.3939;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.117;QD=22.18;ReadPosRankSum=1.699;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4614,522,0 chrVII 396713 . C T 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.3869;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.225;QD=22.20;ReadPosRankSum=1.242;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4551,507,0 chrVII 397325 . T C 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=198;Dels=0.00;FS=5.753;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.670;QD=21.72;ReadPosRankSum=2.822;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4301,501,0 chrVII 397937 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=22.29;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1928,216,0 chrVII 397959 . C A 1169 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=16.94;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1202,135,0 chrVII 397971 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=14.37;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:996,111,0 chrVII 398049 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.35;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2625,288,0 chrVII 398606 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.3148;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3574,393,0 chrVII 398646 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=4.063;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.622;QD=23.58;ReadPosRankSum=1.710;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3773,432,0 chrVII 399032 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4508,513,0 chrVII 399494 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.778;DP=206;Dels=0.00;FS=5.647;HaplotypeScore=16.6575;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.680;QD=20.41;ReadPosRankSum=2.877;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:4205,483,0 chrVII 399537 . T C 5415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=262;Dels=0.00;FS=5.293;HaplotypeScore=22.4275;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.089;QD=20.67;ReadPosRankSum=2.942;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:3,257:261:99:5415,618,0 chrVII 399668 . C T 4903.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.91;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4903,540,0 chrVII 399782 . G A 4839.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.2441;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.72;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4839,540,0 chrVII 399836 . T C 4930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=209;Dels=0.00;FS=3.023;HaplotypeScore=8.4634;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.251;QD=23.59;ReadPosRankSum=2.403;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4930,561,0 chrVII 400162 . T C 2440 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4460;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2473,282,0 chrVII 400297 . A G 199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=4.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.791;QD=18.09;ReadPosRankSum=1.423;SB=-7.596e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:27:232,27,0 chrVII 401117 . A G 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=128;Dels=0.00;FS=2.595;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.230;QD=21.55;ReadPosRankSum=2.881;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2792,318,0 chrVII 401617 . G T 1095 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=19.55;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1128,123,0 chrVII 401621 . T G 799 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=17.37;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:96:832,96,0 chrVII 401919 . G A 900 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=23.68;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:933,105,0 chrVII 402343 . G T 155.06 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.45;MQ0=4;QD=7.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:21:188,21,0 chrVII 402421 . T A 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=0;QD=8.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrVII 402424 . C A 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=0;QD=8.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrVII 402469 . G A 432 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.34;MQ0=0;QD=17.28;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:54:465,54,0 chrVII 402481 . T C 508 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=0;QD=16.93;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:63:541,63,0 chrVII 402494 . C T 528 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=0;QD=15.53;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:63:561,63,0 chrVII 402657 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=0;QD=2.18;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:53,6,0 chrVII 402661 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=0;QD=2.38;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:55,6,0 chrVII 402678 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=0;QD=3.15;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:73,9,0 chrVII 402691 . C G 60.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=0;QD=3.78;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:93,12,0 chrVII 402692 . A G 64.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=0;QD=4.03;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:97,12,0 chrVII 402738 . G A 170.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=0;QD=8.10;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:203,24,0 chrVII 402740 . T C 166.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=0;QD=7.91;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:199,24,0 chrVII 402745 . C A 152.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=6.34;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:185,21,0 chrVII 402753 . T C 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=5.56;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:172,21,0 chrVII 402756 . A G 142.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=5.68;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:175,21,0 chrVII 402762 . T A 161.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=6.44;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:24:194,24,0 chrVII 402771 . A G 120.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=5.46;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:153,18,0 chrVII 402772 . A G 120.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=5.46;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:153,18,0 chrVII 402774 . C T 121.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=5.51;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:154,18,0 chrVII 402776 . C T 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=5.64;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:157,18,0 chrVII 402778 . A T 130.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=5.92;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:163,18,0 chrVII 402786 . T A 59.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;MQRankSum=1.331;QD=2.20;ReadPosRankSum=3.105;SB=2.66 GT:AD:DP:GQ:PL 1/1:4,23:27:12:92,12,0 chrVII 402787 . C T 59.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.945;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;MQRankSum=1.126;QD=2.20;ReadPosRankSum=3.105;SB=0.673 GT:AD:DP:GQ:PL 1/1:4,23:27:12:92,12,0 chrVII 402793 . C A 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.58;MQ0=0;QD=2.24;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:12:102,12,0 chrVII 402798 . T C 64.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.9362;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;MQRankSum=1.924;QD=1.95;ReadPosRankSum=2.301;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,31:33:12:97,12,0 chrVII 402805 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=0;QD=1.06;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:9:65,9,0 chrVII 402806 . A C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=0;QD=1.06;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:9:65,9,0 chrVII 402811 . G C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=0;QD=0.97;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:9:65,9,0 chrVII 402815 . G C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=0;QD=0.94;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:9:65,9,0 chrVII 402817 . G T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=0;QD=0.94;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:9:65,9,0 chrVII 402827 . G C 100.13 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.88;MQ0=0;QD=2.44;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:18:133,18,0 chrVII 402848 . G T 431 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=0;QD=7.98;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:54:464,54,0 chrVII 402859 . A T 771 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=0;QD=13.07;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:804,93,0 chrVII 402909 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=0;QD=21.49;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1860,230,0 chrVII 402939 . G C 1646 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=2;QD=21.38;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1679,209,0 chrVII 402945 . T G 1398 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.80;MQ0=2;QD=20.56;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1431,182,0 chrVII 402946 . A G 1350 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.68;MQ0=2;QD=20.15;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1383,176,0 chrVII 403026 . C A 1302 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=0;QD=20.03;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1335,162,0 chrVII 403029 . C T 1241 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=0;QD=18.25;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1274,153,0 chrVII 403032 . C A 1235 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=0;QD=19.60;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1268,153,0 chrVII 403068 . A G 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=0;MQRankSum=-2.211;QD=16.68;ReadPosRankSum=2.792;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:3,60:63:99:1084,137,0 chrVII 403071 . T C 929 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.66;MQ0=0;QD=17.53;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:962,117,0 chrVII 403102 . A G 850 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=0;MQRankSum=0.553;QD=18.09;ReadPosRankSum=1.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,46:47:99:883,108,0 chrVII 403104 . G T 852 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=18.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:885,108,0 chrVII 403105 . G A 874 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=19.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:907,108,0 chrVII 403107 . A G 840 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=18.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:873,108,0 chrVII 403114 . G A 809 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=0;QD=16.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:842,102,0 chrVII 403116 . C G 804 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=0;QD=16.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:837,102,0 chrVII 403125 . T G 590 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=15.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:623,78,0 chrVII 403127 . A T 588 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=15.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:621,78,0 chrVII 403128 . A G 578 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=15.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:611,78,0 chrVII 403131 . C T 590 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=15.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:623,78,0 chrVII 403133 . C G 590 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=15.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:623,78,0 chrVII 403138 . T C 565 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=15.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:598,78,0 chrVII 403139 . C G 588 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=15.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:621,78,0 chrVII 403250 . T C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=0;QD=1.05;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:9:71,9,0 chrVII 403255 . A G 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=0;QD=1.61;SB=-2.855e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:12:92,12,0 chrVII 403257 . G T 84.26 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=0;QD=2.28;SB=-3.143e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:15:117,15,0 chrVII 403275 . G A 86.26 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=1;QD=2.10;SB=-4.413e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:15:119,15,0 chrVII 403304 . C T 83.26 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=2;QD=1.98;SB=-1.693e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:15:116,15,0 chrVII 403320 . C T 59.51 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=2;QD=1.53;SB=-4.352e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:12:92,12,0 chrVII 403448 . C T 134.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=14.90;SB=-6.694e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:167,21,0 chrVII 403479 . G A 430 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=3;QD=14.83;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:57:463,57,0 chrVII 403493 . C T 592 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.35;MQ0=6;QD=15.18;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:625,78,0 chrVII 403516 . C T 1214 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=9;QD=18.12;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1247,144,0 chrVII 403550 . A G 1266 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=9;QD=18.90;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1299,162,0 chrVII 403571 . G A 1322 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=6;QD=19.73;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1355,159,0 chrVII 403603 . T A 650 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=0;QD=20.31;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:683,87,0 chrVII 403607 . A G 615 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=0;QD=21.21;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:648,84,0 chrVII 403628 . A G 285 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.76;MQ0=0;QD=19.00;SB=-6.500e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:42:318,42,0 chrVII 403638 . G A 218 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.43;MQ0=0;QD=18.17;SB=-4.299e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:251,33,0 chrVII 403664 . A G 76.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=15.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:109,12,0 chrVII 403666 . G A 76.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=15.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:109,12,0 chrVII 403685 . T C 75.51 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.37;MQ0=8;QD=5.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,12:13:12:108,12,0 chrVII 403686 . C T 69.51 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.37;MQ0=8;QD=5.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:12:102,12,0 chrVII 403700 . T C 254 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=23;Dels=0.00;FS=20.212;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=8;MQRankSum=0.425;QD=11.04;ReadPosRankSum=2.123;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:2,21:23:33:287,33,0 chrVII 403728 . A G 681 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.19;MQ0=8;QD=16.21;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:84:714,84,0 chrVII 403770 . T C 838 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=6;QD=17.46;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:871,105,0 chrVII 403789 . C T 728 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.87;MQ0=5;QD=17.33;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:93:761,93,0 chrVII 403790 . G A 729 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=5;QD=17.78;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:762,93,0 chrVII 403799 . T G 534 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=5;QD=14.05;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:567,72,0 chrVII 403856 . T C 102.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=2;QD=9.28;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,10:11:18:135,18,0 chrVII 403934 . A C 41.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;QD=5.25;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,7:8:9:74,9,0 chrVII 403950 . A T 343 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=1;QD=14.91;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:42:376,42,0 chrVII 404032 . A G 220 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.03;MQ0=11;QD=8.15;SB=-2.600e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:30:253,30,0 chrVII 404046 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=14.08;MQ0=10;QD=1.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:15:6:49,6,0 chrVII 404238 . G A 982 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=3;QD=14.44;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1015,111,0 chrVII 404239 . C A 1007 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=3;QD=14.81;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1040,114,0 chrVII 404295 . T C 1146 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=13;QD=15.08;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1179,132,0 chrVII 404296 . T C 1114 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=13;QD=14.85;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1147,129,0 chrVII 404609 . G A 244 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=2;QD=4.88;SB=-1.513e-02 GT:AD:DP:GQ:PL 1/1:0,49:50:30:277,30,0 chrVII 404661 . G A 152.06 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=0;QD=8.94;SB=-7.279e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:21:185,21,0 chrVII 405432 . C T 597 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=0;QD=6.71;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:69:630,69,0 chrVII 405433 . T A 572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;MQRankSum=-1.232;QD=6.36;ReadPosRankSum=1.694;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:1,89:90:69:605,69,0 chrVII 405571 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=24.28;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3375,375,0 chrVII 405802 . A G 5364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=231;Dels=0.00;FS=14.430;HaplotypeScore=20.0557;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.084;QD=23.22;ReadPosRankSum=2.943;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,225:231:99:5364,612,0 chrVII 406378 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3855,423,0 chrVII 406576 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.72;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2260,249,0 chrVII 407652 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=6.452;HaplotypeScore=14.4750;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.900;QD=21.63;ReadPosRankSum=2.366;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3828,432,0 chrVII 408708 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=4.6326;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.64;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3523,402,0 chrVII 408709 . A C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.265;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.4213;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.107;QD=18.53;ReadPosRankSum=2.930;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:4,184:189:99:3503,402,0 chrVII 408767 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.86;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4167,456,0 chrVII 408864 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.39;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3828,426,0 chrVII 408942 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.95;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2856,318,0 chrVII 409104 . T C 1749 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.10;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1782,204,0 chrVII 410159 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.50;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3280,366,0 chrVII 410219 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4530,507,0 chrVII 410420 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2713,297,0 chrVII 410531 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.9520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3082,351,0 chrVII 410597 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.71;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2942,321,0 chrVII 411293 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.98;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2928,333,0 chrVII 411573 . G A 2553 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.64;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2586,285,0 chrVII 411737 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.85;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4340,480,0 chrVII 411968 . T C 4804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=216;Dels=0.00;FS=2.977;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.893;QD=22.24;ReadPosRankSum=2.359;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4804,549,0 chrVII 412287 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.28;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3565,408,0 chrVII 412368 . A T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.0380;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.35;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3580,399,0 chrVII 412407 . G C 2783 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.74;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2816,324,0 chrVII 412827 . T C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=124;Dels=0.00;FS=6.156;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=-0.069;QD=19.12;ReadPosRankSum=2.271;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2404,273,0 chrVII 412828 . C T 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.01;FS=8.893;HaplotypeScore=9.3877;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=-0.028;QD=19.31;ReadPosRankSum=1.564;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2447,273,0 chrVII 412864 . T A 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=-0.120;QD=17.91;ReadPosRankSum=1.689;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2880,327,0 chrVII 412886 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=166.2394;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=15.88;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2939,327,0 chrVII 413052 . A T 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=172;Dels=0.00;FS=2.563;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-0.736;QD=20.37;ReadPosRankSum=2.378;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3504,390,0 chrVII 413054 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=19.86;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3337,375,0 chrVII 413096 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=20.08;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3675,399,0 chrVII 413263 . T A 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.789;DP=259;Dels=0.00;FS=2.317;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.298;QD=17.67;ReadPosRankSum=3.771;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:5,254:259:99:4577,495,0 chrVII 413267 . T C 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=12.0386;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-0.244;QD=15.96;ReadPosRankSum=1.707;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,276:279:99:4454,507,0 chrVII 413797 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.77;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2297,252,0 chrVII 413962 . C G 2177 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.03;FS=0.000;HaplotypeScore=117.2994;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=14.32;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,143:148:99:2210,255,0 chrVII 414004 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=21.5660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.89;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3977,447,0 chrVII 414265 . G A 7426.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=34.6317;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.43;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:7426,816,0 chrVII 414334 . T C 6104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=280;Dels=0.00;FS=3.026;HaplotypeScore=18.0668;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.682;QD=21.80;ReadPosRankSum=1.695;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:1,276:280:99:6104,705,0 chrVII 414653 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.04;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4147,459,0 chrVII 414752 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=177;Dels=0.00;FS=4.155;HaplotypeScore=11.7791;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.673;QD=21.60;ReadPosRankSum=1.713;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3823,435,0 chrVII 415307 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.64;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3035,336,0 chrVII 415568 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=3.012;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.045;QD=22.17;ReadPosRankSum=2.418;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3414,387,0 chrVII 415592 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=2.940;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.396;QD=21.21;ReadPosRankSum=2.423;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:3902,453,0 chrVII 415703 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.90;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3871,429,0 chrVII 416143 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.2172;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.51;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3444,384,0 chrVII 417265 . G T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.5071;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.97;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3951,450,0 chrVII 417295 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.28;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3520,396,0 chrVII 417363 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.49;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3914,444,0 chrVII 417671 . A G 4950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=209;Dels=0.00;FS=3.501;HaplotypeScore=16.6194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.581;QD=23.68;ReadPosRankSum=1.715;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:4950,558,0 chrVII 418238 . C T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.90;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5043,555,0 chrVII 418502 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.41;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3939,453,0 chrVII 418953 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.310;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.439;QD=22.51;ReadPosRankSum=1.709;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3399,381,0 chrVII 419249 . C G 3526.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.66;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3526,399,0 chrVII 419557 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.05;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4209,456,0 chrVII 420073 . T C 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=282;Dels=0.00;FS=4.058;HaplotypeScore=16.3891;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.175;QD=18.22;ReadPosRankSum=1.720;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:1,279:282:99:5138,579,0 chrVII 420956 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.74;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1683,189,0 chrVII 420974 . T C 2059 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.75;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2092,240,0 chrVII 421027 . C T 3081 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=19.50;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3114,342,0 chrVII 421036 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.60;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2992,327,0 chrVII 421123 . A G 2217 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.62;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2250,255,0 chrVII 421148 . C A 2493 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.68;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2526,276,0 chrVII 421235 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.530;QD=23.25;ReadPosRankSum=1.707;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3241,372,0 chrVII 421272 . A G 2593 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.61;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2626,303,0 chrVII 421291 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=18.88;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2468,273,0 chrVII 421299 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=18.75;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2377,270,0 chrVII 421385 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.2601;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.99;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3407,387,0 chrVII 421478 . T G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=3.513;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.063;QD=21.20;ReadPosRankSum=1.674;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2556,297,0 chrVII 421561 . T C 3016 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.6564;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.51;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3049,345,0 chrVII 421600 . T A 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=110;Dels=0.04;FS=6.751;HaplotypeScore=9.6390;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.219;QD=22.40;ReadPosRankSum=2.357;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2497,273,0 chrVII 421687 . A T 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=6.067;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.782;QD=18.19;ReadPosRankSum=2.347;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1779,201,0 chrVII 421694 . T G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.156;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.742;QD=19.18;ReadPosRankSum=1.694;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1778,201,0 chrVII 421776 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.69;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2778,315,0 chrVII 421836 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=132;Dels=0.00;FS=2.860;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.685;QD=22.14;ReadPosRankSum=2.393;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2956,345,0 chrVII 422027 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=114;Dels=0.00;FS=14.316;HaplotypeScore=12.8972;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.829;QD=19.10;ReadPosRankSum=2.937;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:3,109:114:99:2210,252,0 chrVII 422059 . T G 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=116;Dels=0.00;FS=7.863;HaplotypeScore=99.3884;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=1.775;QD=16.72;ReadPosRankSum=2.363;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,111:116:99:1972,225,0 chrVII 422080 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=17.47;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2182,240,0 chrVII 422200 . A C 2629 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=23.68;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2662,306,0 chrVII 422320 . T A 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=4.847;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.627;QD=21.00;ReadPosRankSum=1.672;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2469,270,0 chrVII 422330 . T A 2611 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.72;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2644,291,0 chrVII 422332 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.95;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2694,294,0 chrVII 422386 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8678;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=18.19;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2653,294,0 chrVII 422415 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.6784;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=13.64;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1833,219,0 chrVII 422434 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=13.72;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1597,189,0 chrVII 422440 . G C 1585 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=13.10;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:1618,189,0 chrVII 422454 . C G 1611 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=14.78;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1644,189,0 chrVII 422564 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=21.87;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3029,339,0 chrVII 422588 . T C 3057 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=20.52;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3090,351,0 chrVII 422613 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=17.86;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2623,291,0 chrVII 422776 . T C 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=124;Dels=0.00;FS=4.771;HaplotypeScore=6.1818;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.422;QD=21.56;ReadPosRankSum=1.704;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2707,318,0 chrVII 422836 . T A 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.260;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=0.600;QD=23.76;ReadPosRankSum=1.699;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2504,276,0 chrVII 422864 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.38;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2137,237,0 chrVII 422866 . T A 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.753;QD=22.48;ReadPosRankSum=1.657;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2101,228,0 chrVII 422918 . C G 2352 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.00;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2385,282,0 chrVII 422951 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.63;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2391,273,0 chrVII 423035 . T C 2345 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.57;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2378,273,0 chrVII 423053 . C G 2478 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.00;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2511,285,0 chrVII 423214 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=158;Dels=0.00;FS=6.503;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.065;QD=18.59;ReadPosRankSum=2.076;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2971,333,0 chrVII 423215 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.578;QD=18.51;ReadPosRankSum=1.710;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:2957,333,0 chrVII 423339 . C T 4919.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.04;FS=0.000;HaplotypeScore=11.8740;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=25.10;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4919,534,0 chrVII 423825 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-1.242;QD=23.02;ReadPosRankSum=1.671;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2680,309,0 chrVII 423906 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.71;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2530,282,0 chrVII 423934 . C A 2021 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.01;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2054,234,0 chrVII 424042 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=153;Dels=0.01;FS=7.858;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.336;QD=21.91;ReadPosRankSum=2.417;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3352,381,0 chrVII 424065 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2798;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.665;QD=22.25;ReadPosRankSum=1.531;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3449,384,0 chrVII 424176 . T C 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.0085;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.384;QD=22.97;ReadPosRankSum=1.715;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4616,531,0 chrVII 424261 . C T 4875.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=18.3878;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.26;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4875,534,0 chrVII 424512 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.339;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.686;QD=23.43;ReadPosRankSum=1.663;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3562,402,0 chrVII 424620 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.23;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3333,366,0 chrVII 424652 . A C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.5861;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.330;QD=20.70;ReadPosRankSum=1.705;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2641,300,0 chrVII 424734 . T C 2703 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.80;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2736,321,0 chrVII 424942 . A T 2042 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2075,234,0 chrVII 425181 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.21;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2745,300,0 chrVII 425227 . G C 2545 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.03;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2578,291,0 chrVII 425244 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.27;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2689,297,0 chrVII 425446 . A C 1877 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.33;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1910,219,0 chrVII 425497 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.39;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2459,285,0 chrVII 426136 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0800;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.57;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3516,390,0 chrVII 426148 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=154;Dels=0.00;FS=2.631;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.726;QD=20.84;ReadPosRankSum=2.402;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3242,372,0 chrVII 426211 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.71;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3269,390,0 chrVII 426538 . G T 2707 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.05;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2740,303,0 chrVII 426675 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.657;QD=23.08;ReadPosRankSum=1.682;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3241,369,0 chrVII 426969 . G T 2831 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.20;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2864,318,0 chrVII 427020 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.37;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1778,192,0 chrVII 427318 . G A 4357.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.48;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4357,501,0 chrVII 427600 . A G 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.260;QD=20.27;ReadPosRankSum=1.683;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:4379,498,0 chrVII 427741 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.5333;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.49;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3825,420,0 chrVII 427807 . C A 3215 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.80;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3248,360,0 chrVII 428022 . C T 827 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:860,102,0 chrVII 428152 . A G 1155 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1188,144,0 chrVII 428325 . C G 995 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1028,114,0 chrVII 428363 . G A 956 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.12;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:989,108,0 chrVII 428368 . T C 913 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.02;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:946,108,0 chrVII 428441 . T C 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.915;QD=20.26;ReadPosRankSum=2.333;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:2,40:42:99:884,105,0 chrVII 428481 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.07;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1644,189,0 chrVII 428542 . C G 1739 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.19;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1772,201,0 chrVII 428588 . C G 2013 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.68;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2046,246,0 chrVII 428698 . A T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.57;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3517,384,0 chrVII 428728 . T A 4257.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.29;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4257,468,0 chrVII 428940 . C T 4726.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.29;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4726,519,0 chrVII 429020 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.42;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3556,396,0 chrVII 429278 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.00;FS=4.150;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.525;QD=21.12;ReadPosRankSum=1.703;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2546,300,0 chrVII 429467 . A T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.54;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3256,354,0 chrVII 429706 . A C 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=137;Dels=0.00;FS=3.023;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.488;QD=21.06;ReadPosRankSum=2.357;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,132:137:99:2918,330,0 chrVII 429727 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.66;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3130,342,0 chrVII 429811 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.01;FS=7.197;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.386;QD=19.96;ReadPosRankSum=2.386;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:3893,441,0 chrVII 429941 . T C 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=163;Dels=0.00;FS=11.121;HaplotypeScore=10.2117;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.599;QD=19.65;ReadPosRankSum=2.895;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3236,363,0 chrVII 430401 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.37;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1669,183,0 chrVII 430559 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.14;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2833,339,0 chrVII 430810 . T C 6127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=275;Dels=0.01;FS=5.155;HaplotypeScore=46.8043;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;MQRankSum=-2.207;QD=22.28;ReadPosRankSum=3.370;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:4,265:272:99:6127,696,0 chrVII 430867 . G A 6706.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=225.8067;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.21;SB=-3.295e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:6706,729,0 chrVII 431116 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.58;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4553,513,0 chrVII 431168 . G C 3571.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.64;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3571,399,0 chrVII 431198 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.26;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2806,318,0 chrVII 431344 . A T 872 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:905,102,0 chrVII 431442 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=3.18;SB=-5.180e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:47,6,0 chrVII 431448 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=3.18;SB=-5.180e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:47,6,0 chrVII 431867 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=18.5914;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.23;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5047,573,0 chrVII 432076 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.226;DP=219;Dels=0.00;FS=3.492;HaplotypeScore=17.7316;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.293;QD=21.77;ReadPosRankSum=-0.546;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4767,508,0 chrVII 432412 . A G 5388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=238;Dels=0.00;FS=2.685;HaplotypeScore=12.1747;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.150;QD=22.64;ReadPosRankSum=2.398;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5388,618,0 chrVII 432654 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.1587;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.96;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3627,399,0 chrVII 432925 . A T 4824.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.03;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4824,531,0 chrVII 432934 . A G 4508.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.13;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4508,510,0 chrVII 433212 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.04;FS=0.000;HaplotypeScore=6.7906;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=15.86;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1127,126,0 chrVII 433234 . A G 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=59;Dels=0.00;FS=5.621;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.121;QD=18.17;ReadPosRankSum=2.881;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:3,56:59:99:1105,129,0 chrVII 433416 . T A 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.136;QD=23.53;ReadPosRankSum=1.620;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2221,243,0 chrVII 433556 . C T 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.685;QD=19.33;ReadPosRankSum=-1.237;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2875,321,0 chrVII 433697 . A G 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.3522;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.778;QD=19.98;ReadPosRankSum=1.697;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1991,228,0 chrVII 433865 . A T 1061 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.39;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1094,129,0 chrVII 434126 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;DP=171;Dels=0.00;FS=3.612;HaplotypeScore=11.1718;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.365;QD=22.26;ReadPosRankSum=-0.998;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3807,415,0 chrVII 434166 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.483;DP=169;Dels=0.00;FS=3.477;HaplotypeScore=19.1257;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.151;QD=21.20;ReadPosRankSum=-0.404;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3582,371,0 chrVII 434308 . A T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=22.31;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4172,465,0 chrVII 434403 . A G 5188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.297;DP=234;Dels=0.00;FS=9.136;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=-1.196;QD=22.17;ReadPosRankSum=3.364;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:5188,594,0 chrVII 434447 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=182;Dels=0.02;FS=2.582;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=-0.860;QD=20.14;ReadPosRankSum=2.961;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3665,420,0 chrVII 434505 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;DP=119;Dels=0.03;FS=2.585;HaplotypeScore=49.3271;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=-2.009;QD=15.10;ReadPosRankSum=2.939;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:1830,213,0 chrVII 434566 . A G 43.97 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=0.48;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:9:76,9,0 chrVII 434580 . G A 620 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=0;QD=4.84;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:72:653,72,0 chrVII 434601 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=7.67;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:1390,150,0 chrVII 434603 . T C 1338 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=7.39;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:1371,153,0 chrVII 434630 . A G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=201;Dels=0.00;FS=2.745;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;MQRankSum=-0.055;QD=10.82;ReadPosRankSum=2.425;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:2207,249,0 chrVII 434654 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=14.87;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2471,273,0 chrVII 434679 . C A 1769 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=14.38;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1802,198,0 chrVII 434704 . T C 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=2.794;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;MQRankSum=-0.655;QD=11.89;ReadPosRankSum=2.414;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:1662,189,0 chrVII 434720 . A C 1494 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=11.15;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,126:132:99:1527,174,0 chrVII 434752 . C G 2827 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=16.44;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2860,330,0 chrVII 434905 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=23.06;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3262,360,0 chrVII 435041 . G C 1801 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.24;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1834,207,0 chrVII 435054 . A G 1831 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.31;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1864,219,0 chrVII 435215 . A C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.873;DP=131;Dels=0.00;FS=3.905;HaplotypeScore=7.4956;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.723;QD=23.08;ReadPosRankSum=0.666;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3056,330,0 chrVII 435261 . A G 2632 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=22.12;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2665,303,0 chrVII 435280 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.128;DP=112;Dels=0.00;FS=9.271;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.902;QD=20.64;ReadPosRankSum=3.316;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:4,108:112:99:2345,264,0 chrVII 435340 . T C 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=114;Dels=0.00;FS=3.826;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.952;QD=19.54;ReadPosRankSum=1.670;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,110:114:99:2261,261,0 chrVII 435393 . T A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=136.0665;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=23.55;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3439,375,0 chrVII 435457 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=17.72;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1752,204,0 chrVII 435463 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.03;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=18.37;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1723,192,0 chrVII 435470 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=92;Dels=0.00;FS=2.581;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-1.078;QD=18.57;ReadPosRankSum=2.923;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:3,88:92:99:1741,201,0 chrVII 435490 . G C 1706 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.07;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1739,201,0 chrVII 435545 . A G 2154 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.76;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2187,249,0 chrVII 435577 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=2.934;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.657;QD=22.64;ReadPosRankSum=2.378;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2388,273,0 chrVII 435609 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.80;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2404,261,0 chrVII 435691 . T C 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.512;QD=18.72;ReadPosRankSum=1.614;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1680,192,0 chrVII 435692 . T C 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.476;QD=18.69;ReadPosRankSum=1.656;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1734,198,0 chrVII 435845 . A T 2971 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.4108;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.96;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3004,330,0 chrVII 435907 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=0.442;QD=16.41;ReadPosRankSum=2.363;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1904,216,0 chrVII 435910 . G A 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.107;QD=16.30;ReadPosRankSum=-0.414;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,112:116:99:1940,200,0 chrVII 435931 . T C 2376 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=17.86;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2409,282,0 chrVII 436038 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.54;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3366,372,0 chrVII 436065 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.22;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3191,351,0 chrVII 436337 . G A 1415 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.77;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1448,162,0 chrVII 436543 . A G 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.485;QD=24.01;ReadPosRankSum=-0.242;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2434,276,0 chrVII 436601 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.75;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2582,282,0 chrVII 436628 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2173,240,0 chrVII 436774 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.7538;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.42;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3520,399,0 chrVII 436989 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.10;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2692,303,0 chrVII 436994 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.27;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2546,288,0 chrVII 437195 . A C 2785 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.01;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2818,318,0 chrVII 437304 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.96;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1521,168,0 chrVII 437336 . T C 1650 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.30;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1683,192,0 chrVII 437349 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.36;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1665,183,0 chrVII 438009 . G T 2649 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.07;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2682,288,0 chrVII 438031 . A G 2651 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.66;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2684,300,0 chrVII 438146 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.00;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2217,240,0 chrVII 438333 . G T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0172;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.27;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3488,381,0 chrVII 438433 . G A 6560.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.16;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:6560,747,0 chrVII 438434 . G A 6923.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=4.1977;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.39;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6923,754,0 chrVII 438470 . A T 5673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.710;QD=21.74;ReadPosRankSum=-1.493;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:5673,605,0 chrVII 438674 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=18.6500;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=1.546;QD=12.47;ReadPosRankSum=0.925;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:3,172:177:99:2241,255,0 chrVII 438708 . C T 374.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.56;MQ0=0;QD=2.94;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:48:407,48,0 chrVII 438728 . A T 1194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;MQRankSum=-0.837;QD=9.87;ReadPosRankSum=1.617;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1227,141,0 chrVII 438750 . C A 1509 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=12.68;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1542,168,0 chrVII 438990 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.48;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2183,246,0 chrVII 439216 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.601;QD=22.74;ReadPosRankSum=1.680;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3057,348,0 chrVII 439277 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2774,303,0 chrVII 439789 . A G 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=90;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.578;QD=22.14;ReadPosRankSum=1.694;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2026,228,0 chrVII 439794 . G T 1945 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.10;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1978,219,0 chrVII 439864 . A T 1560 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.08;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1593,177,0 chrVII 440160 . G C 2898 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.12;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2931,330,0 chrVII 440224 . T C 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.078;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.652;QD=21.12;ReadPosRankSum=1.705;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2779,315,0 chrVII 440241 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.63;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2570,285,0 chrVII 440359 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.17;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2108,237,0 chrVII 440438 . T C 793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.6081;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;MQRankSum=1.335;QD=12.02;ReadPosRankSum=-1.108;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:96:826,96,0 chrVII 440586 . T C 858 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=18.65;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:891,105,0 chrVII 440605 . G A 777 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.58;MQ0=0;QD=19.42;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:810,90,0 chrVII 440621 . C T 724 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=35.7521;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;QD=17.24;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:84:757,84,0 chrVII 440626 . C T 672 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=35.5196;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=16.80;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:705,81,0 chrVII 440636 . A T 607 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=16.41;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:640,72,0 chrVII 440671 . A G 510 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=14.57;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:63:543,63,0 chrVII 440683 . C A 468 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=14.18;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:54:501,54,0 chrVII 440689 . A C 423 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=12.09;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:51:456,51,0 chrVII 440693 . T A 479 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=-0.644;QD=13.69;ReadPosRankSum=1.634;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:57:512,57,0 chrVII 440833 . C A 369 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=20.50;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:402,48,0 chrVII 440835 . C A 351 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=20.65;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:45:384,45,0 chrVII 440838 . A G 329 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;MQRankSum=0.102;QD=19.35;ReadPosRankSum=1.123;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:1,16:17:45:362,45,0 chrVII 440843 . C T 301 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.27;MQ0=0;QD=21.50;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:334,39,0 chrVII 440879 . G C 179.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=12.79;SB=-2.603e+01 GT:AD:DP:GQ:PL 1/1:0,12:14:24:212,24,0 chrVII 440908 . G A 391 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.55;SB=-6.640e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:48:424,48,0 chrVII 440973 . T A 471 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=6.8856;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=17.44;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:57:504,57,0 chrVII 441362 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=175;Dels=0.00;FS=2.583;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.305;QD=22.96;ReadPosRankSum=2.960;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4018,456,0 chrVII 441602 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.99;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2932,324,0 chrVII 442010 . A C 5116.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.25;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5116,597,0 chrVII 442175 . A C 389.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.073;DP=199;Dels=0.00;FS=8.093;HaplotypeScore=13.0129;MLEAC=1;MLEAF=0.500;MQ=54.17;MQ0=0;MQRankSum=-0.745;QD=1.95;ReadPosRankSum=-6.259;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:141,57:199:99:419,0,2573 chrVII 442184 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=3.014;HaplotypeScore=10.8682;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-1.692;QD=18.73;ReadPosRankSum=2.425;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:3764,429,0 chrVII 442208 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=0.343;QD=15.44;ReadPosRankSum=1.667;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:3289,378,0 chrVII 442220 . A G 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=219;Dels=0.00;FS=5.833;HaplotypeScore=19.1643;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-1.126;QD=13.81;ReadPosRankSum=2.958;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:3,213:219:99:3057,351,0 chrVII 442299 . C G 4835.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=29.3299;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.84;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:4835,552,0 chrVII 442339 . A G 5640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=251;Dels=0.00;FS=3.884;HaplotypeScore=13.7585;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.077;QD=22.47;ReadPosRankSum=1.690;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:1,246:251:99:5640,668,0 chrVII 442475 . C G 6161.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.00;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:6161,702,0 chrVII 442501 . C G 6024.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.23;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,266:271:99:6024,687,0 chrVII 442559 . G A 6151.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=9.7949;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.97;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6151,681,0 chrVII 442571 . T G 5979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=280;Dels=0.00;FS=7.349;HaplotypeScore=6.6605;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.121;QD=21.35;ReadPosRankSum=2.397;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:2,277:280:99:5979,675,0 chrVII 442784 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.92;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3327,378,0 chrVII 442874 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=5.185;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.136;QD=23.57;ReadPosRankSum=1.627;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3889,441,0 chrVII 442935 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.80;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2475,282,0 chrVII 442968 . A T 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=104;Dels=0.00;FS=3.012;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.172;QD=22.63;ReadPosRankSum=2.379;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2387,267,0 chrVII 443007 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2890,330,0 chrVII 443095 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.72;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2668,309,0 chrVII 443161 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.15;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2580,288,0 chrVII 443602 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=3.195;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.203;QD=23.10;ReadPosRankSum=1.660;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3326,378,0 chrVII 443639 . G T 2438 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=15.5154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2471,282,0 chrVII 443945 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.87;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3095,345,0 chrVII 443969 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.76;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3106,336,0 chrVII 443972 . G A 2958 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.72;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2991,330,0 chrVII 444070 . C A 4934.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.67;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4934,540,0 chrVII 444107 . C A 4955.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.5167;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.60;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4955,561,0 chrVII 444236 . C T 5545.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.85;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5545,624,0 chrVII 444248 . A G 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=250;Dels=0.00;FS=6.918;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.065;QD=18.99;ReadPosRankSum=2.292;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:2,248:250:99:4748,558,0 chrVII 444466 . T C 5512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=254;Dels=0.00;FS=3.028;HaplotypeScore=18.3330;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.141;QD=21.70;ReadPosRankSum=2.381;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:2,250:254:99:5512,633,0 chrVII 444535 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.51;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4279,468,0 chrVII 444683 . C A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.63;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4255,465,0 chrVII 444932 . A T 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=130;Dels=0.00;FS=6.401;HaplotypeScore=10.0169;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.010;QD=22.56;ReadPosRankSum=2.373;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2966,324,0 chrVII 445067 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.569;QD=23.29;ReadPosRankSum=1.707;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3284,372,0 chrVII 446059 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=3.680;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.926;QD=22.67;ReadPosRankSum=1.695;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4307,492,0 chrVII 446161 . C A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.22;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3464,384,0 chrVII 446205 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.95;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3216,357,0 chrVII 446220 . A T 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.615;QD=21.14;ReadPosRankSum=1.685;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3161,360,0 chrVII 446301 . G A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.59;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3886,426,0 chrVII 446369 . G A 3770.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.48;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3770,414,0 chrVII 446399 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.91;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3610,408,0 chrVII 446571 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.69;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3766,417,0 chrVII 446751 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=167;Dels=0.00;FS=10.448;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.461;QD=22.07;ReadPosRankSum=2.946;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3685,417,0 chrVII 446910 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.7340;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.18;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4787,531,0 chrVII 447534 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.20;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3410,381,0 chrVII 447761 . G C 4280.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.29;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4280,489,0 chrVII 447792 . G T 5561.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.33;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5561,606,0 chrVII 447888 . G C 4720.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.45;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:4720,543,0 chrVII 448106 . T C 4618.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.91;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:4618,525,0 chrVII 448116 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.48;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4480,510,0 chrVII 449525 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.79;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:3646,426,0 chrVII 449549 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.37;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3249,372,0 chrVII 449637 . C T 5346.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.14;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5346,591,0 chrVII 449763 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=179;Dels=0.00;FS=9.690;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-0.899;QD=19.39;ReadPosRankSum=2.354;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3470,411,0 chrVII 449774 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=4.038;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=1.021;QD=18.41;ReadPosRankSum=1.657;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3406,381,0 chrVII 449776 . C T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=18.63;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3409,381,0 chrVII 449791 . T C 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-0.318;QD=17.88;ReadPosRankSum=1.679;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:3523,396,0 chrVII 449829 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.54;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:3656,417,0 chrVII 449895 . G A 3068 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.82;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3101,345,0 chrVII 450034 . C A 1753 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.62;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1786,195,0 chrVII 450372 . C G 6454.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=11.6303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.89;SB=-3.724e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:6454,738,0 chrVII 450623 . C G 4828.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.5297;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.20;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4828,543,0 chrVII 451100 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.7595;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.54;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4071,462,0 chrVII 451307 . A G 4880.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.70;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4880,558,0 chrVII 451346 . C T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.66;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5121,567,0 chrVII 451921 . T C 8437.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=389;Dels=0.00;FS=5.000;HaplotypeScore=20.5350;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.071;QD=21.69;ReadPosRankSum=3.399;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:4,385:389:99:8437,954,0 chrVII 452209 . C T 6447.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=20.4876;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.35;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:0,297:302:99:6447,703,0 chrVII 452296 . A C 6220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.638;DP=275;Dels=0.00;FS=16.379;HaplotypeScore=19.1931;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.689;QD=22.62;ReadPosRankSum=3.804;SB=-3.165e+03 GT:AD:DP:GQ:PL 1/1:5,267:275:99:6220,714,0 chrVII 452589 . G T 3438.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.04;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3438,378,0 chrVII 452990 . G A 6440.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=21.3879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:6440,741,0 chrVII 453309 . G A 4382.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.0886;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.10;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4382,489,0 chrVII 453324 . C G 4058.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.51;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4058,471,0 chrVII 453639 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.9262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4189,477,0 chrVII 454212 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=158;Dels=0.00;FS=5.806;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.535;QD=22.61;ReadPosRankSum=2.917;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3573,408,0 chrVII 454910 . T C 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.0668;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.089;QD=23.85;ReadPosRankSum=1.661;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2346,270,0 chrVII 455013 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.37;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3645,411,0 chrVII 455625 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.962;DP=169;Dels=0.00;FS=19.775;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.568;QD=20.61;ReadPosRankSum=4.098;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:6,162:169:99:3483,396,0 chrVII 455653 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.9490;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.13;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3247,381,0 chrVII 455735 . A G 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=184;Dels=0.00;FS=3.010;HaplotypeScore=12.2023;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.243;QD=22.47;ReadPosRankSum=1.694;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4134,480,0 chrVII 455815 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.764;QD=21.85;ReadPosRankSum=1.713;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3911,444,0 chrVII 455891 . G A 4625.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.24;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4625,519,0 chrVII 456158 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=142;Dels=0.00;FS=9.798;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.636;QD=19.88;ReadPosRankSum=2.922;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:2856,333,0 chrVII 456180 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.521;QD=20.34;ReadPosRankSum=1.679;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2759,315,0 chrVII 456471 . T A 2398 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2431,273,0 chrVII 456545 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.53;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1971,216,0 chrVII 456662 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.239;QD=22.23;ReadPosRankSum=1.704;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2767,321,0 chrVII 456812 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.31;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3404,369,0 chrVII 457313 . G T 5095.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.8255;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.03;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5095,567,0 chrVII 457555 . A C 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.067;QD=22.62;ReadPosRankSum=1.697;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4501,504,0 chrVII 457577 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.14;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3697,411,0 chrVII 457619 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.39;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3273,363,0 chrVII 457688 . C G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.84;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3342,381,0 chrVII 457721 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6987;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.67;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3094,342,0 chrVII 457920 . T A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.32;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3824,423,0 chrVII 458281 . C T 4755.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.3811;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=21.42;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4755,522,0 chrVII 458387 . G A 5988.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.93;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:5988,687,0 chrVII 458458 . T C 6162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=14.0067;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.144;QD=22.74;ReadPosRankSum=1.694;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:6162,702,0 chrVII 458629 . T C 6427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=287;Dels=0.00;FS=6.668;HaplotypeScore=11.2557;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.734;QD=22.39;ReadPosRankSum=2.364;SB=-3.367e+03 GT:AD:DP:GQ:PL 1/1:2,284:287:99:6427,726,0 chrVII 458878 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.92;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3143,339,0 chrVII 459157 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=25.67;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3851,426,0 chrVII 459245 . G C 3499.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.57;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3499,405,0 chrVII 459317 . G C 4781.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=18.39;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:4781,549,0 chrVII 459340 . G A 4905.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=17.15;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:4905,540,0 chrVII 459352 . G A 4699.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=17.03;SB=-3.176e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:4699,510,0 chrVII 459355 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=279;Dels=0.00;FS=3.510;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=-0.389;QD=15.63;ReadPosRankSum=1.694;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:1,275:279:99:4362,492,0 chrVII 459382 . T G 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=257;Dels=0.00;FS=3.096;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=0.115;QD=15.10;ReadPosRankSum=1.719;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:3881,441,0 chrVII 459691 . G C 4360.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.3347;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.57;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:4360,498,0 chrVII 459767 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.09;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4396,507,0 chrVII 460066 . T C 5158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=242;Dels=0.00;FS=4.472;HaplotypeScore=16.2978;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-1.295;QD=21.31;ReadPosRankSum=1.688;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,238:242:99:5158,585,0 chrVII 460250 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.40;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3113,342,0 chrVII 460330 . T C 4488.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4488,525,0 chrVII 460658 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.14;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3702,411,0 chrVII 460947 . A G 4649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.290;QD=23.60;ReadPosRankSum=1.697;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4649,522,0 chrVII 461035 . G A 4580.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.91;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4580,519,0 chrVII 461071 . T C 4477.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.44;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4477,510,0 chrVII 461146 . A G 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=211;Dels=0.00;FS=3.008;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.943;QD=21.80;ReadPosRankSum=2.378;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:2,205:211:99:4600,525,0 chrVII 461588 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.06;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3464,396,0 chrVII 461612 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.43;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3319,387,0 chrVII 461767 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.73;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3939,432,0 chrVII 461875 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.10;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4387,486,0 chrVII 462190 . A G 4580.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=230;Dels=0.00;FS=3.086;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.874;QD=19.91;ReadPosRankSum=1.717;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4580,531,0 chrVII 462196 . G A 4496.01 SnpCluster AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.16;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4496,492,0 chrVII 462199 . A G 4264.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=225;Dels=0.00;FS=10.191;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.673;QD=18.95;ReadPosRankSum=2.960;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:4264,483,0 chrVII 462937 . T C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-1.532;QD=18.70;ReadPosRankSum=1.646;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2314,264,0 chrVII 462940 . T C 2303 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.19;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2336,267,0 chrVII 462984 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.40;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2664,291,0 chrVII 463064 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.55;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2619,297,0 chrVII 463069 . C G 2407 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.23;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2440,288,0 chrVII 463111 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.29;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2841,309,0 chrVII 463348 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=148;Dels=0.00;FS=6.662;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.158;QD=21.53;ReadPosRankSum=2.400;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3220,378,0 chrVII 463843 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=17.5405;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.794;QD=22.22;ReadPosRankSum=1.714;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4267,483,0 chrVII 464170 . A G 2405 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9410;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.88;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2438,279,0 chrVII 464314 . C G 2715 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.21;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2748,318,0 chrVII 464972 . T C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.962;QD=18.72;ReadPosRankSum=1.684;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1381,162,0 chrVII 465028 . A G 2628 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.46;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2661,306,0 chrVII 465777 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=21.24;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1520,168,0 chrVII 465873 . T A 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.071;QD=21.27;ReadPosRankSum=1.163;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1586,180,0 chrVII 466029 . A T 3020 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3053,339,0 chrVII 466092 . T C 4177.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4177,480,0 chrVII 466974 . C T 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=159;Dels=0.00;FS=4.205;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.965;QD=19.78;ReadPosRankSum=1.579;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3178,351,0 chrVII 467277 . A T 4275.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.1534;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.36;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4275,468,0 chrVII 467379 . G A 5363.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.22;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5363,577,0 chrVII 467387 . T C 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.048;QD=20.64;ReadPosRankSum=1.686;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:4747,549,0 chrVII 467473 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.44;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4414,504,0 chrVII 467621 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.34;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3043,327,0 chrVII 467683 . A G 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.593;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.087;QD=18.74;ReadPosRankSum=2.865;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1570,183,0 chrVII 467730 . C T 396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.252;DP=26;Dels=0.00;FS=2.840;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-1.553;QD=15.23;ReadPosRankSum=-1.152;SB=-2.335e+02 GT:AD:DP:GQ:PL 1/1:2,23:26:48:429,48,0 chrVII 467736 . T C 303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;DP=42;Dels=0.05;FS=2.444;HaplotypeScore=19.8085;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.286;QD=7.21;ReadPosRankSum=3.558;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:5,35:40:39:336,39,0 chrVII 468020 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=189;Dels=0.00;FS=3.844;HaplotypeScore=12.2330;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.146;QD=22.90;ReadPosRankSum=1.714;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4329,489,0 chrVII 468105 . A G 5086.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.55;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5086,576,0 chrVII 469230 . A G 63.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DP=192;Dels=0.02;FS=0.000;HaplotypeScore=16.3736;MLEAC=1;MLEAF=0.500;MQ=42.30;MQ0=0;MQRankSum=-8.874;QD=0.33;ReadPosRankSum=-4.537;SB=-4.610e+02 GT:AD:DP:GQ:PL 0/1:109,79:188:93:93,0,1887 chrVII 469231 . A T 90.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;DP=193;Dels=0.02;FS=0.000;HaplotypeScore=16.3736;MLEAC=1;MLEAF=0.500;MQ=42.24;MQ0=0;MQRankSum=-9.073;QD=0.47;ReadPosRankSum=-4.086;SB=-4.630e+02 GT:AD:DP:GQ:PL 0/1:110,79:189:99:120,0,1950 chrVII 469233 . A G 120.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DP=197;Dels=0.00;FS=0.597;HaplotypeScore=17.1189;MLEAC=1;MLEAF=0.500;MQ=42.68;MQ0=0;MQRankSum=-6.569;QD=0.61;ReadPosRankSum=-4.505;SB=-4.930e+02 GT:AD:DP:GQ:PL 0/1:106,89:197:99:150,0,1811 chrVII 469239 . T G 412.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.298;DP=211;Dels=0.00;FS=0.586;HaplotypeScore=19.4302;MLEAC=1;MLEAF=0.500;MQ=42.99;MQ0=0;MQRankSum=-3.985;QD=1.95;ReadPosRankSum=-3.751;SB=-5.910e+02 GT:AD:DP:GQ:PL 0/1:99,110:211:99:442,0,1658 chrVII 469242 . A G 560.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=42.49;MQ0=0;MQRankSum=-3.267;QD=2.72;ReadPosRankSum=-3.965;SB=-6.080e+02 GT:AD:DP:GQ:PL 0/1:90,116:206:99:590,0,1396 chrVII 469269 . A G 578.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;DP=245;Dels=0.00;FS=4.628;HaplotypeScore=7.7059;MLEAC=1;MLEAF=0.500;MQ=45.60;MQ0=0;MQRankSum=-2.191;QD=2.36;ReadPosRankSum=-10.717;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:180,64:245:99:608,0,1917 chrVII 469926 . A G 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.583;DP=119;Dels=0.00;FS=12.339;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.272;QD=21.99;ReadPosRankSum=3.768;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:5,114:119:99:2650,303,0 chrVII 470028 . A G 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.761;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.540;QD=24.07;ReadPosRankSum=1.677;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3066,354,0 chrVII 470370 . T C 3198 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3231,366,0 chrVII 470499 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2760,300,0 chrVII 470658 . A G 2823 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2856,339,0 chrVII 470964 . C G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.35;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3251,369,0 chrVII 471870 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.01;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4402,486,0 chrVII 472002 . T C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=3.231;HaplotypeScore=6.2524;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.700;QD=21.50;ReadPosRankSum=1.658;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3065,348,0 chrVII 472038 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.82;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3643,408,0 chrVII 472313 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.29;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:3511,381,0 chrVII 472321 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=204;Dels=0.00;FS=2.975;HaplotypeScore=8.4074;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.238;QD=17.31;ReadPosRankSum=2.401;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:2,199:204:99:3531,402,0 chrVII 472609 . A G 6025.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.01;FS=0.000;HaplotypeScore=18.6154;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=22.82;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6025,684,0 chrVII 472821 . G C 5892.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.75;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5892,672,0 chrVII 473345 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.4087;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.41;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3877,426,0 chrVII 473448 . A G 4978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=238;Dels=0.00;FS=9.425;HaplotypeScore=18.2628;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.911;QD=20.92;ReadPosRankSum=2.919;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:3,233:238:99:4978,590,0 chrVII 473748 . G A 5648.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=17.1224;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.64;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:5648,645,0 chrVII 473949 . A T 5014.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.01;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.78;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5014,555,0 chrVII 473951 . G T 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=269;Dels=0.00;FS=2.975;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-1.540;QD=18.52;ReadPosRankSum=2.321;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:2,265:269:99:4982,543,0 chrVII 474282 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=3.371;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.414;QD=21.22;ReadPosRankSum=1.711;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3501,399,0 chrVII 474708 . T C 5170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.209;DP=248;Dels=0.00;FS=18.417;HaplotypeScore=16.6423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.717;QD=20.85;ReadPosRankSum=4.462;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:7,239:248:99:5170,591,0 chrVII 474798 . C T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.65;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4621,519,0 chrVII 474810 . T A 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=3.108;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.347;QD=21.80;ReadPosRankSum=1.674;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3924,435,0 chrVII 475074 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.02;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3939,429,0 chrVII 475388 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=5.671;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=1.285;QD=20.72;ReadPosRankSum=1.665;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3245,372,0 chrVII 475390 . A T 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.02;FS=0.000;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.270;QD=21.38;ReadPosRankSum=1.687;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3356,369,0 chrVII 475467 . A G 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=152;Dels=0.00;FS=4.895;HaplotypeScore=22.3016;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.846;QD=20.38;ReadPosRankSum=3.378;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3131,354,0 chrVII 475766 . G A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.93;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3740,408,0 chrVII 476151 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=138;Dels=0.00;FS=8.199;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.205;QD=23.43;ReadPosRankSum=2.396;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3268,360,0 chrVII 476296 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.305;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.948;QD=23.23;ReadPosRankSum=1.707;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3216,357,0 chrVII 476424 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.509;QD=23.14;ReadPosRankSum=1.709;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3587,405,0 chrVII 476660 . A G 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.639;QD=22.86;ReadPosRankSum=1.714;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4274,489,0 chrVII 476814 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.25;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3813,414,0 chrVII 476844 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.06;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4036,441,0 chrVII 477015 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=18.9402;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.04;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4688,513,0 chrVII 477047 . T C 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=200;Dels=0.00;FS=5.776;HaplotypeScore=16.5744;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.843;QD=22.52;ReadPosRankSum=2.934;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:4504,513,0 chrVII 477210 . A G 4584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=214;Dels=0.00;FS=6.068;HaplotypeScore=17.2648;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.599;QD=21.42;ReadPosRankSum=2.920;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:4584,525,0 chrVII 477384 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=201;Dels=0.00;FS=7.418;HaplotypeScore=21.3669;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.870;QD=20.16;ReadPosRankSum=2.351;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4053,462,0 chrVII 478308 . A T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.22;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5311,585,0 chrVII 478509 . G A 3894.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.32;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3894,429,0 chrVII 478940 . A G 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=136;Dels=0.00;FS=2.573;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.053;QD=22.46;ReadPosRankSum=2.947;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:3,130:136:99:3088,354,0 chrVII 478970 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.34;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3547,384,0 chrVII 478995 . G C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.2079;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.03;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3680,423,0 chrVII 479144 . G C 3207 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.43;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3240,369,0 chrVII 479157 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=7.378;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.386;QD=21.58;ReadPosRankSum=2.387;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3366,384,0 chrVII 479200 . T A 3082 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.70;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3115,348,0 chrVII 479288 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.51;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2196,240,0 chrVII 479325 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.347;QD=21.54;ReadPosRankSum=1.592;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2165,249,0 chrVII 479356 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.53;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1888,210,0 chrVII 479371 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=17.32;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1367,156,0 chrVII 480192 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=21.04;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4081,459,0 chrVII 480201 . G T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.1854;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=19.89;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4077,453,0 chrVII 480296 . T A 5417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=1.292;QD=21.50;ReadPosRankSum=1.718;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5417,591,0 chrVII 480357 . A T 2825 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=3.576;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=-1.277;QD=12.78;ReadPosRankSum=1.716;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:2858,321,0 chrVII 480363 . T G 2288 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;MQRankSum=-1.503;QD=10.74;ReadPosRankSum=1.716;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:2321,267,0 chrVII 480366 . A G 2183 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=209;Dels=0.00;FS=11.507;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;MQRankSum=-2.938;QD=10.44;ReadPosRankSum=2.947;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:2216,255,0 chrVII 480369 . T C 2114 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=207;Dels=0.00;FS=5.679;HaplotypeScore=4.6148;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.092;QD=10.21;ReadPosRankSum=2.966;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:2147,246,0 chrVII 480374 . C T 1819 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=6.3951;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.70;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:1852,210,0 chrVII 480375 . T A 1852 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9724;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.287;QD=10.77;ReadPosRankSum=1.088;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:1885,210,0 chrVII 480378 . G A 1837 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=4.448;HaplotypeScore=7.9724;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.349;QD=10.15;ReadPosRankSum=-1.636;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:1870,207,0 chrVII 480381 . C T 1876 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.4419;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=9.72;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:1909,216,0 chrVII 480384 . A G 1827 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=199;Dels=0.00;FS=8.869;HaplotypeScore=5.2306;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;MQRankSum=1.043;QD=9.18;ReadPosRankSum=2.425;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:1860,213,0 chrVII 480426 . G T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=15.75;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:3386,375,0 chrVII 480444 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=17.27;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:3816,432,0 chrVII 480576 . A C 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=232;Dels=0.00;FS=3.013;HaplotypeScore=17.1385;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=1.019;QD=23.26;ReadPosRankSum=2.418;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:5397,624,0 chrVII 480612 . A G 5037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.9331;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=1.392;QD=23.54;ReadPosRankSum=1.716;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5037,573,0 chrVII 480789 . A G 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=222;Dels=0.00;FS=9.116;HaplotypeScore=18.0758;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.978;QD=20.51;ReadPosRankSum=2.510;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:4,218:222:99:4553,525,0 chrVII 481626 . G A 6717.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=17.7427;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.10;SB=-3.667e+03 GT:AD:DP:GQ:PL 1/1:0,301:304:99:6717,759,0 chrVII 481748 . A C 6068.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=5.0139;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.23;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6068,681,0 chrVII 481763 . T C 5195.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=19.31;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5195,597,0 chrVII 481770 . A C 4994.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=18.57;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:4994,573,0 chrVII 481776 . T C 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.8142;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-1.291;QD=17.18;ReadPosRankSum=1.719;SB=-3.101e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:4724,534,0 chrVII 482008 . T C 5661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=251;Dels=0.00;FS=6.730;HaplotypeScore=21.3266;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.074;QD=22.55;ReadPosRankSum=2.430;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:2,247:251:99:5661,636,0 chrVII 482042 . C T 5526.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.2047;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.10;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5526,621,0 chrVII 482318 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=18.3855;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.13;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3341,375,0 chrVII 482421 . A G 4887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=229;Dels=0.00;FS=17.499;HaplotypeScore=16.6376;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.783;QD=21.34;ReadPosRankSum=2.951;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:3,224:229:99:4887,578,0 chrVII 482739 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.26;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1877,204,0 chrVII 482835 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.00;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1689,192,0 chrVII 482911 . A T 2069 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.74;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2102,234,0 chrVII 482953 . C G 1330 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=17.73;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1363,153,0 chrVII 482968 . A C 1128 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=15.24;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1161,132,0 chrVII 482980 . T C 1078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-1.192;QD=14.00;ReadPosRankSum=1.687;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1111,126,0 chrVII 483344 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.78;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3494,381,0 chrVII 483440 . G T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.03;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3323,366,0 chrVII 483833 . G A 4408.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.09;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4408,483,0 chrVII 483913 . T A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.86;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3498,381,0 chrVII 484318 . T G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=7.4359;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.354;QD=22.09;ReadPosRankSum=2.371;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3468,402,0 chrVII 484452 . T C 2974 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.8337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3007,345,0 chrVII 484780 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.07;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1587,180,0 chrVII 484786 . T C 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.104;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.147;QD=18.00;ReadPosRankSum=1.695;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1743,198,0 chrVII 484843 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.00;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2769,309,0 chrVII 484957 . T C 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.397;QD=22.10;ReadPosRankSum=1.696;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2177,249,0 chrVII 485223 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2694,297,0 chrVII 485256 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.482;QD=22.56;ReadPosRankSum=1.654;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3034,348,0 chrVII 485387 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.07;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1883,213,0 chrVII 485728 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.67;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2140,234,0 chrVII 485779 . G C 2892 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2925,330,0 chrVII 485842 . A C 2784 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.17;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2817,324,0 chrVII 486003 . T C 2818 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.29;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2851,321,0 chrVII 487305 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.30;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3858,429,0 chrVII 487329 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.63;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3712,405,0 chrVII 487435 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.47;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2910,327,0 chrVII 487937 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6936;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2345,252,0 chrVII 488041 . G A 4953.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4953,564,0 chrVII 488836 . G T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3725,411,0 chrVII 489042 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.81;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3573,387,0 chrVII 489552 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1025,114,0 chrVII 489734 . T C 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.873;QD=22.48;ReadPosRankSum=2.932;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2348,270,0 chrVII 489944 . A G 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=208;Dels=0.00;FS=7.575;HaplotypeScore=15.1966;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.976;QD=23.35;ReadPosRankSum=2.426;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:2,203:208:99:4856,549,0 chrVII 490077 . C T 4900.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.11;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4900,552,0 chrVII 490117 . C T 4759.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.77;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4759,528,0 chrVII 490304 . T C 4990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=3.341;HaplotypeScore=22.1196;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.494;QD=22.58;ReadPosRankSum=1.700;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,217:221:99:4990,570,0 chrVII 490528 . G T 4403.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.48;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4403,486,0 chrVII 490539 . C G 4091.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.12;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4091,462,0 chrVII 490551 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.2609;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.54;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4041,447,0 chrVII 490750 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.98;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3176,348,0 chrVII 490765 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.31;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3142,354,0 chrVII 491698 . C A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3984,441,0 chrVII 491763 . C T 5423.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.43;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5423,591,0 chrVII 492175 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=12.0538;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.74;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3527,381,0 chrVII 492317 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=-1.332;QD=22.72;ReadPosRankSum=1.688;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3544,411,0 chrVII 492362 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.22;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2982,345,0 chrVII 492438 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=6.595;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.520;QD=20.48;ReadPosRankSum=2.334;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3084,354,0 chrVII 492468 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.32;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3750,405,0 chrVII 492864 . A G 7353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=313;Dels=0.00;FS=4.999;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.688;QD=23.49;ReadPosRankSum=1.699;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,312:313:99:7353,819,0 chrVII 493569 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.90;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4763,537,0 chrVII 494094 . C A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.3347;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.07;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4531,513,0 chrVII 494205 . A C 4411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.930;QD=22.74;ReadPosRankSum=1.659;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,189:194:99:4411,501,0 chrVII 494624 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.0666;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.96;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4108,474,0 chrVII 494636 . C T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.1395;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.96;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4371,474,0 chrVII 494870 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4441;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.37;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4138,471,0 chrVII 494903 . T G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.0226;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.80;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4012,459,0 chrVII 495047 . A C 3451.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3451,393,0 chrVII 495861 . A G 4714.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1998;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.72;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4714,552,0 chrVII 496380 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.12;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3152,345,0 chrVII 496647 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2375,264,0 chrVII 496909 . T C 622 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:75:655,75,0 chrVII 497041 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrVII 497422 . T A 2751 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2784,312,0 chrVII 497601 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.90;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3260,360,0 chrVII 497968 . A G 1967 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.67;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2000,228,0 chrVII 498157 . T C 1827 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1860,213,0 chrVII 498388 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.92;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3143,345,0 chrVII 498425 . T G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=3.009;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.448;QD=23.45;ReadPosRankSum=2.415;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3307,381,0 chrVII 498734 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.30;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3300,363,0 chrVII 498951 . A G 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=181;Dels=0.00;FS=6.293;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.693;QD=22.89;ReadPosRankSum=2.395;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4143,480,0 chrVII 499229 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.98;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2431,273,0 chrVII 499382 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.40;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2194,240,0 chrVII 499429 . T C 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=108;Dels=0.00;FS=5.503;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.171;QD=20.56;ReadPosRankSum=2.934;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:3,103:108:99:2253,258,0 chrVII 499647 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=172;Dels=0.00;FS=10.585;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.130;QD=22.06;ReadPosRankSum=2.900;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3794,432,0 chrVII 499727 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.60;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2970,324,0 chrVII 500228 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=128;Dels=0.00;FS=6.620;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.644;QD=21.74;ReadPosRankSum=2.411;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2816,324,0 chrVII 500302 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.550;DP=141;Dels=0.00;FS=5.878;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.250;QD=21.49;ReadPosRankSum=2.950;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3063,348,0 chrVII 500434 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=8.368;HaplotypeScore=14.0845;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.594;QD=23.18;ReadPosRankSum=2.354;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4172,483,0 chrVII 500624 . A G 4725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.354;QD=22.18;ReadPosRankSum=1.650;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4725,549,0 chrVII 501138 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.90;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4708,525,0 chrVII 501301 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.75;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4513,495,0 chrVII 501606 . T C 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=174;Dels=0.00;FS=2.623;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.693;QD=23.28;ReadPosRankSum=2.364;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4050,459,0 chrVII 502282 . G T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.24;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3568,405,0 chrVII 502442 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.52;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2667,291,0 chrVII 502491 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.74;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1630,183,0 chrVII 502616 . T A 1729 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.83;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1762,195,0 chrVII 502964 . A G 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=130;Dels=0.00;FS=7.942;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.001;QD=19.12;ReadPosRankSum=2.373;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2518,282,0 chrVII 502974 . T C 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=8.9344;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.768;QD=19.05;ReadPosRankSum=1.706;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2605,291,0 chrVII 503343 . G C 6107.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=18.0503;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.70;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:6107,699,0 chrVII 503498 . T C 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=239;Dels=0.00;FS=4.099;HaplotypeScore=5.3125;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.355;QD=20.08;ReadPosRankSum=1.718;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:4800,540,0 chrVII 503503 . T C 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=252;Dels=0.00;FS=8.398;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.350;QD=20.37;ReadPosRankSum=2.400;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:2,247:252:99:5134,585,0 chrVII 503654 . A G 4114.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=23.2325;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.77;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4114,471,0 chrVII 503707 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=189;Dels=0.00;FS=5.860;HaplotypeScore=13.3980;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.436;QD=21.55;ReadPosRankSum=2.963;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4072,471,0 chrVII 503735 . A T 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=184;Dels=0.00;FS=3.253;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.563;QD=22.72;ReadPosRankSum=1.713;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4181,474,0 chrVII 503816 . A G 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=3.945;HaplotypeScore=11.1701;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.735;QD=22.95;ReadPosRankSum=1.678;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4406,492,0 chrVII 504390 . T C 2730 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.1811;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.00;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2763,312,0 chrVII 504753 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.67;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3432,387,0 chrVII 505188 . A G 4818.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.90;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4818,561,0 chrVII 505269 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=178;Dels=0.00;FS=2.919;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.229;QD=20.66;ReadPosRankSum=2.422;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3678,423,0 chrVII 505783 . T C 4813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=210;Dels=0.00;FS=2.954;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.403;QD=22.92;ReadPosRankSum=2.403;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4813,546,0 chrVII 505922 . A T 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.732;QD=21.92;ReadPosRankSum=1.647;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4450,486,0 chrVII 506015 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.76;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3924,417,0 chrVII 506019 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=18.43;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3538,399,0 chrVII 507127 . T C 5471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.650;QD=21.45;ReadPosRankSum=1.718;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,252:255:99:5471,627,0 chrVII 507137 . A T 5308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=240;Dels=0.00;FS=4.357;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.043;QD=22.12;ReadPosRankSum=1.718;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5308,579,0 chrVII 507248 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.57;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3995,456,0 chrVII 507287 . A T 5291.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.73;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5291,582,0 chrVII 507502 . C T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.9656;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.05;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3978,441,0 chrVII 507990 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.73;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3238,357,0 chrVII 508031 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.60;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3517,387,0 chrVII 508084 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=121.2571;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=1.492;QD=18.73;ReadPosRankSum=1.519;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2486,288,0 chrVII 508161 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.52;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2942,321,0 chrVII 508201 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=184;Dels=0.00;FS=2.544;HaplotypeScore=6.3215;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.601;QD=20.27;ReadPosRankSum=2.918;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3730,423,0 chrVII 508206 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=193;Dels=0.00;FS=5.292;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.168;QD=17.95;ReadPosRankSum=1.620;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,185:193:99:3464,408,0 chrVII 508231 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.4996;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.35;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4045,468,0 chrVII 508419 . T C 4950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=239;Dels=0.00;FS=14.314;HaplotypeScore=11.8001;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.042;QD=20.71;ReadPosRankSum=2.895;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,235:239:99:4950,564,0 chrVII 508460 . G A 5081.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.71;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5081,579,0 chrVII 508546 . A C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=3.757;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.094;QD=21.11;ReadPosRankSum=1.664;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3263,375,0 chrVII 508768 . T A 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=107;Dels=0.03;FS=6.368;HaplotypeScore=44.4111;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.433;QD=18.64;ReadPosRankSum=1.699;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2027,228,0 chrVII 508848 . A G 1714 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.81;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1747,195,0 chrVII 509560 . T C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=154;Dels=0.00;FS=2.992;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.551;QD=20.16;ReadPosRankSum=2.418;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3138,360,0 chrVII 509569 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.23;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3238,357,0 chrVII 509895 . T G 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.551;HaplotypeScore=10.4840;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.327;QD=20.72;ReadPosRankSum=1.695;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:3957,462,0 chrVII 510060 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=220;Dels=0.00;FS=3.151;HaplotypeScore=18.1533;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.273;QD=20.79;ReadPosRankSum=1.669;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4574,525,0 chrVII 510416 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=193;Dels=0.00;FS=3.148;HaplotypeScore=13.7790;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.541;QD=20.12;ReadPosRankSum=1.678;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3884,450,0 chrVII 510553 . A G 6299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=286;Dels=0.00;FS=3.599;HaplotypeScore=17.9822;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.354;QD=22.02;ReadPosRankSum=1.695;SB=-3.142e+03 GT:AD:DP:GQ:PL 1/1:1,283:286:99:6299,714,0 chrVII 510615 . C T 6420.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=19.7998;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.61;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,281:284:99:6420,708,0 chrVII 510742 . C T 5572.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.29;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5572,606,0 chrVII 510755 . G A 5543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.0685;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.143;QD=21.82;ReadPosRankSum=0.418;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:5543,584,0 chrVII 512135 . T C 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.7234;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.505;QD=21.78;ReadPosRankSum=1.714;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4226,480,0 chrVII 512279 . A G 5892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=277;Dels=0.00;FS=8.976;HaplotypeScore=19.4762;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.103;QD=21.27;ReadPosRankSum=3.329;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:4,273:277:99:5892,692,0 chrVII 512459 . T C 4517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=215;Dels=0.00;FS=6.459;HaplotypeScore=7.7045;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.235;QD=21.01;ReadPosRankSum=2.415;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:4517,516,0 chrVII 512833 . A G 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=185;Dels=0.00;FS=2.551;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.473;QD=19.90;ReadPosRankSum=2.897;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:3681,429,0 chrVII 512835 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.65;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3717,420,0 chrVII 512884 . T C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=136;Dels=0.00;FS=3.043;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.638;QD=19.88;ReadPosRankSum=1.706;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:2737,315,0 chrVII 513154 . C A 4822.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=21.5704;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.41;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4822,549,0 chrVII 513683 . C T 5904.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.34;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5904,660,0 chrVII 513785 . C A 6055.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.38;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:6055,666,0 chrVII 513842 . C T 5865.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=19.3594;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.18;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5865,642,0 chrVII 514058 . T G 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=3.438;HaplotypeScore=15.2145;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.415;QD=23.17;ReadPosRankSum=1.714;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4519,522,0 chrVII 514497 . A G 2515 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.50;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2548,288,0 chrVII 514511 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.75;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2482,279,0 chrVII 514680 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.61;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3803,435,0 chrVII 514698 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1280;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.99;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3980,438,0 chrVII 514934 . T C 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=207;Dels=0.00;FS=4.162;HaplotypeScore=7.7577;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.043;QD=22.42;ReadPosRankSum=1.682;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4640,525,0 chrVII 515594 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.81;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3858,432,0 chrVII 515701 . A T 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=174;Dels=0.00;FS=9.413;HaplotypeScore=14.0411;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.191;QD=22.92;ReadPosRankSum=2.902;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3988,435,0 chrVII 516406 . T C 3935.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.08;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3935,456,0 chrVII 516816 . A T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3299,375,0 chrVII 517302 . T C 6634.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.61;SB=-3.478e+03 GT:AD:DP:GQ:PL 1/1:0,305:307:99:6634,750,0 chrVII 517365 . T A 6514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=325;Dels=0.00;FS=3.475;HaplotypeScore=15.9471;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.421;QD=20.04;ReadPosRankSum=1.657;SB=-3.685e+03 GT:AD:DP:GQ:PL 1/1:1,324:325:99:6514,738,0 chrVII 517444 . T C 5791.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.29;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5791,660,0 chrVII 517587 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=245;Dels=0.03;FS=6.885;HaplotypeScore=22.8405;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-1.728;QD=17.40;ReadPosRankSum=2.346;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:4262,489,0 chrVII 517605 . C G 4120.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=16.61;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:4120,465,0 chrVII 517615 . A G 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=-0.287;QD=16.71;ReadPosRankSum=1.688;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:1,235:238:99:3977,447,0 chrVII 517670 . T A 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=231;Dels=0.00;FS=6.071;HaplotypeScore=9.1666;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-1.317;QD=16.95;ReadPosRankSum=2.926;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:3,228:231:99:3916,429,0 chrVII 517674 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=233;Dels=0.01;FS=3.086;HaplotypeScore=6.1966;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=-0.979;QD=16.82;ReadPosRankSum=1.717;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:3919,444,0 chrVII 517686 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=19.87;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4193,465,0 chrVII 517761 . A G 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=225;Dels=0.00;FS=3.030;HaplotypeScore=20.4301;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.073;QD=21.54;ReadPosRankSum=2.417;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:4847,558,0 chrVII 517812 . C T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.96;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4088,453,0 chrVII 517815 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=189;Dels=0.00;FS=6.580;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.710;QD=19.84;ReadPosRankSum=2.410;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:2,183:189:99:3749,438,0 chrVII 517876 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-0.624;QD=20.03;ReadPosRankSum=2.395;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3606,408,0 chrVII 517909 . T C 4393.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=19.7011;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.12;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4393,501,0 chrVII 518049 . G A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.5521;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.43;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4441,483,0 chrVII 518080 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.53;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:3594,408,0 chrVII 518083 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=208;Dels=0.00;FS=9.015;HaplotypeScore=5.0953;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=2.202;QD=16.85;ReadPosRankSum=2.402;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:3505,396,0 chrVII 518259 . T C 6013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=11.8353;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.523;QD=21.79;ReadPosRankSum=1.694;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:6013,696,0 chrVII 518306 . A G 7304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=331;Dels=0.00;FS=5.991;HaplotypeScore=20.5429;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.550;QD=22.07;ReadPosRankSum=2.936;SB=-3.901e+03 GT:AD:DP:GQ:PL 1/1:3,325:331:99:7304,816,0 chrVII 518449 . A T 5748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.6727;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.377;QD=23.56;ReadPosRankSum=1.704;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5748,627,0 chrVII 518580 . T C 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=244;Dels=0.00;FS=2.952;HaplotypeScore=14.5047;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.096;QD=20.55;ReadPosRankSum=2.379;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:5014,579,0 chrVII 519183 . T C 200.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.292;DP=50;Dels=0.00;FS=136.964;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=1;MQRankSum=3.246;QD=4.00;ReadPosRankSum=-1.055;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,28:50:99:230,0,197 chrVII 519231 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=1;QD=18.25;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1657,201,0 chrVII 519356 . C G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9316;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=1;QD=20.38;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3485,393,0 chrVII 519381 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=1;QD=21.31;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3324,360,0 chrVII 520020 . A G 5247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.029;DP=255;Dels=0.00;FS=13.788;HaplotypeScore=26.4206;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.048;QD=20.58;ReadPosRankSum=4.124;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:6,247:255:99:5247,600,0 chrVII 520129 . C A 5299.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5299,579,0 chrVII 520227 . G A 4619.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.3774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.42;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4619,516,0 chrVII 521004 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.330;QD=23.06;ReadPosRankSum=1.713;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4174,489,0 chrVII 521046 . T A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.68;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3812,432,0 chrVII 521128 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.26;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3396,375,0 chrVII 521257 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.14;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3680,405,0 chrVII 521696 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.25;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2592,297,0 chrVII 522036 . A C 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.363;QD=19.88;ReadPosRankSum=1.709;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3035,345,0 chrVII 522062 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.16;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2755,306,0 chrVII 522131 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3770,408,0 chrVII 522323 . C T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.70;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4594,513,0 chrVII 522593 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3292,372,0 chrVII 522691 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.33;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1328,153,0 chrVII 522692 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.83;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1408,159,0 chrVII 522713 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.97;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1354,147,0 chrVII 522892 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.68;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1711,186,0 chrVII 522948 . T G 2386 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.39;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2419,276,0 chrVII 522987 . T G 2239 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.12;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2272,255,0 chrVII 522988 . T C 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.176;QD=20.44;ReadPosRankSum=2.843;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2261,252,0 chrVII 523005 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.85;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2038,228,0 chrVII 523077 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.37;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2255,246,0 chrVII 523089 . A T 2073 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.93;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2106,228,0 chrVII 523190 . G T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=23.04;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3664,405,0 chrVII 523348 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=23.22;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3297,369,0 chrVII 523385 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=22.53;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3650,396,0 chrVII 523412 . A G 3043 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=17.49;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3076,354,0 chrVII 523415 . G T 3044 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=18.79;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3077,339,0 chrVII 523417 . C T 2998 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=18.39;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3031,339,0 chrVII 523732 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=178;Dels=0.00;FS=7.327;HaplotypeScore=138.3566;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.040;QD=20.76;ReadPosRankSum=2.408;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3696,417,0 chrVII 524713 . T C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=129;Dels=0.00;FS=12.512;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.711;QD=19.26;ReadPosRankSum=2.914;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2517,294,0 chrVII 524803 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=16.0821;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.46;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2835,327,0 chrVII 524998 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.45;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2570,288,0 chrVII 525413 . G C 4805.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.94;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:4805,558,0 chrVII 525947 . A G 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=216;Dels=0.00;FS=2.934;HaplotypeScore=9.7836;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.534;QD=20.05;ReadPosRankSum=2.415;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:4330,501,0 chrVII 525956 . C T 4851.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.9234;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.46;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4851,525,0 chrVII 526158 . T C 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=201;Dels=0.00;FS=2.913;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.944;QD=22.41;ReadPosRankSum=2.400;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4504,519,0 chrVII 526419 . T C 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.192;DP=184;Dels=0.00;FS=8.769;HaplotypeScore=15.3380;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.596;QD=21.37;ReadPosRankSum=3.259;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:99:3932,456,0 chrVII 526684 . T C 2896 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=128.9601;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.69;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2929,330,0 chrVII 526833 . T A 1285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.927;DP=104;Dels=0.02;FS=14.013;HaplotypeScore=40.8039;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-0.741;QD=12.36;ReadPosRankSum=4.341;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:7,95:102:99:1318,153,0 chrVII 527159 . A G 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.277;QD=21.97;ReadPosRankSum=1.715;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4415,507,0 chrVII 527396 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=15.8547;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.385;QD=21.99;ReadPosRankSum=2.391;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3717,429,0 chrVII 527439 . C G 2697 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.5429;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=17.40;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2730,312,0 chrVII 528223 . G C 6954.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.65;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,304:307:99:6954,795,0 chrVII 528396 . A T 5317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=261;Dels=0.00;FS=2.506;HaplotypeScore=32.5634;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.992;QD=20.37;ReadPosRankSum=2.942;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:3,257:261:99:5317,591,0 chrVII 528447 . A C 5284.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.0292;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.05;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5284,606,0 chrVII 528489 . C T 4755.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=9.4075;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.90;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4755,537,0 chrVII 528501 . T C 4549.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.78;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4549,513,0 chrVII 528828 . C T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.4777;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.46;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4357,492,0 chrVII 528948 . T C 324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.158;DP=174;Dels=0.02;FS=8.390;HaplotypeScore=144.9547;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=-0.433;QD=1.86;ReadPosRankSum=-2.763;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,27:171:99:354,0,141 chrVII 528993 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.01;FS=0.000;HaplotypeScore=22.7908;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.78;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4095,456,0 chrVII 529075 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.103;DP=167;Dels=0.00;FS=9.143;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.696;QD=21.31;ReadPosRankSum=2.036;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3558,398,0 chrVII 529177 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.82;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3997,459,0 chrVII 529252 . A G 4658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=218;Dels=0.00;FS=4.122;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.311;QD=21.37;ReadPosRankSum=1.700;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4658,531,0 chrVII 529347 . A T 5776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=253;Dels=0.00;FS=9.929;HaplotypeScore=20.6679;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.810;QD=22.83;ReadPosRankSum=2.411;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:5776,633,0 chrVII 529383 . A G 6031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=277;Dels=0.00;FS=13.939;HaplotypeScore=19.5934;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-1.551;QD=21.77;ReadPosRankSum=2.953;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:3,272:277:99:6031,704,0 chrVII 529451 . C T 8143.01 filter AC=2;AF=1.00;AN=2;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=16.1293;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=22.19;SB=-3.782e+03 GT:AD:DP:GQ:PL 1/1:0,366:367:99:8143,892,0 chrVII 529563 . C T 9548.01 filter AC=2;AF=1.00;AN=2;DP=482;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.81;SB=-4.406e+03 GT:AD:DP:GQ:PL 1/1:0,479:482:99:9548,1053,0 chrVII 529614 . G A 9967.01 filter AC=2;AF=1.00;AN=2;DP=588;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=16.95;SB=-5.771e+03 GT:AD:DP:GQ:PL 1/1:0,588:588:99:9967,1104,0 chrVII 529617 . T C 9254.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=576;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;MQRankSum=0.833;QD=16.07;ReadPosRankSum=1.726;SB=-5.630e+03 GT:AD:DP:GQ:PL 1/1:1,573:576:99:9254,1062,0 chrVII 529630 . A G 8257.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.973;DP=555;Dels=0.00;FS=11.974;HaplotypeScore=3.7007;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;MQRankSum=-2.060;QD=14.88;ReadPosRankSum=2.966;SB=-5.582e+03 GT:AD:DP:GQ:PL 1/1:3,552:555:99:8257,951,0 chrVII 529644 . A T 8516.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=725;Dels=0.00;FS=12.941;HaplotypeScore=13.8901;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;MQRankSum=1.339;QD=11.75;ReadPosRankSum=3.415;SB=-9.208e+03 GT:AD:DP:GQ:PL 1/1:4,721:725:99:8516,936,0 chrVII 529695 . A T 1001.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.295;DP=648;Dels=0.00;FS=9.975;HaplotypeScore=22.2319;MLEAC=1;MLEAF=0.500;MQ=41.45;MQ0=0;MQRankSum=-10.086;QD=1.54;ReadPosRankSum=-14.557;SB=-1.456e+03 GT:AD:DP:GQ:PL 0/1:457,191:648:99:1031,0,5759 chrVII 529935 . G A 1324.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.577;DP=230;Dels=0.00;FS=4.709;HaplotypeScore=127.6568;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=0;MQRankSum=0.293;QD=5.76;ReadPosRankSum=12.230;SB=-7.510e+02 GT:AD:DP:GQ:PL 0/1:74,155:229:99:1354,0,277 chrVII 530004 . A C 118.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.633;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=263.0806;MLEAC=1;MLEAF=0.500;MQ=32.28;MQ0=0;MQRankSum=-5.474;QD=0.37;ReadPosRankSum=-4.807;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:283,40:323:99:148,0,1282 chrVII 530007 . A C 1213.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.404;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=381.1478;MLEAC=1;MLEAF=0.500;MQ=32.34;MQ0=0;MQRankSum=2.330;QD=3.88;ReadPosRankSum=4.546;SB=-2.887e+03 GT:AD:DP:GQ:PL 0/1:43,270:313:99:1243,0,162 chrVII 530037 . A C 163.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=484.5696;MLEAC=1;MLEAF=0.500;MQ=29.40;MQ0=0;MQRankSum=-0.413;QD=0.46;ReadPosRankSum=-3.130;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:327,28:355:63:193,0,63 chrVII 530040 . A C 76.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.312;DP=350;Dels=0.00;FS=0.762;HaplotypeScore=484.3716;MLEAC=1;MLEAF=0.500;MQ=29.27;MQ0=0;MQRankSum=-2.025;QD=0.22;ReadPosRankSum=3.865;SB=-3.090e+03 GT:AD:DP:GQ:PL 0/1:27,323:350:99:106,0,190 chrVII 530043 . A C 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=359;Dels=0.00;FS=8.268;HaplotypeScore=154.7329;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=0;MQRankSum=-0.012;QD=0.43;ReadPosRankSum=-10.648;SB=-3.120e+02 GT:AD:DP:GQ:PL 0/1:284,75:359:99:183,0,136 chrVII 530046 . A C 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.868;DP=353;Dels=0.00;FS=3.788;HaplotypeScore=92.5450;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=0;MQRankSum=0.109;QD=0.28;ReadPosRankSum=12.037;SB=-2.352e+03 GT:AD:DP:GQ:PL 0/1:71,282:353:99:130,0,169 chrVII 530049 . A C 128.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.665;DP=341;Dels=0.00;FS=1.225;HaplotypeScore=28.6715;MLEAC=1;MLEAF=0.500;MQ=29.25;MQ0=0;MQRankSum=-0.538;QD=0.38;ReadPosRankSum=-10.538;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:292,49:341:99:158,0,159 chrVII 530052 . A C 189.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=5.0889;MLEAC=1;MLEAF=0.500;MQ=29.25;MQ0=0;MQRankSum=-0.606;QD=0.55;ReadPosRankSum=10.931;SB=-2.581e+03 GT:AD:DP:GQ:PL 0/1:47,294:341:99:219,0,154 chrVII 530074 . T C 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=292;Dels=0.00;FS=3.616;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;MQRankSum=-1.685;QD=7.29;ReadPosRankSum=1.673;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:1,291:292:99:2163,249,0 chrVII 530085 . A T 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=278;Dels=0.00;FS=5.875;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;MQRankSum=-0.910;QD=7.31;ReadPosRankSum=2.765;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:3,275:278:99:2065,234,0 chrVII 530120 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=10.45;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:2311,264,0 chrVII 530123 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=11.56;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:2553,288,0 chrVII 530142 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=229;Dels=0.00;FS=6.390;HaplotypeScore=8.7307;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=-1.538;QD=14.51;ReadPosRankSum=2.353;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:3322,395,0 chrVII 530308 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=200;Dels=0.00;FS=5.585;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=1.266;QD=19.10;ReadPosRankSum=2.965;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:3819,435,0 chrVII 530472 . A T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.39;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3762,411,0 chrVII 530543 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=12.0824;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.92;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3373,369,0 chrVII 530805 . A T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.42;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4476,495,0 chrVII 531266 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=25.27;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2029,222,0 chrVII 531286 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=25.16;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1794,198,0 chrVII 531322 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=24.37;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1544,168,0 chrVII 531684 . A T 1067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-0.440;QD=18.08;ReadPosRankSum=2.367;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1100,120,0 chrVII 531741 . A C 1054 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=21.51;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1087,126,0 chrVII 531976 . T C 1864 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.21;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1897,219,0 chrVII 532147 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.500;QD=23.41;ReadPosRankSum=1.686;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3488,396,0 chrVII 532320 . T G 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=179;Dels=0.00;FS=3.034;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.446;QD=23.08;ReadPosRankSum=2.422;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4132,477,0 chrVII 533539 . A G 4681.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4681,531,0 chrVII 533747 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.93;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3256,360,0 chrVII 533847 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.13;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3317,363,0 chrVII 533952 . T C 881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=5.549;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.256;QD=14.44;ReadPosRankSum=1.675;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:914,108,0 chrVII 534011 . T C 1411 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=12.83;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1444,168,0 chrVII 534023 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=14.35;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1425,165,0 chrVII 534061 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.62;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1396,156,0 chrVII 534162 . A G 2537 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2570,294,0 chrVII 534684 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.244;QD=20.74;ReadPosRankSum=1.705;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2688,312,0 chrVII 534691 . T C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=10.283;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.750;QD=19.98;ReadPosRankSum=2.410;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2490,282,0 chrVII 534707 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.22;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2642,294,0 chrVII 534830 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.88;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2596,288,0 chrVII 534914 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=21.52;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1518,177,0 chrVII 534961 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.82;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1803,204,0 chrVII 535131 . T C 943 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=22.45;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:976,108,0 chrVII 535135 . C T 884 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=23.89;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:917,99,0 chrVII 535139 . C T 785 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=22.43;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:818,87,0 chrVII 535181 . T C 307 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.95;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:340,39,0 chrVII 535212 . G T 282 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=1;QD=15.67;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:36:315,36,0 chrVII 535639 . G A 717 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;QD=20.49;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:84:750,84,0 chrVII 535655 . C T 323 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=23.07;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:39:356,39,0 chrVII 535692 . A C 92.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;MQRankSum=0.742;QD=13.18;ReadPosRankSum=0.742;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:15:125,15,0 chrVII 541712 . A G 404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.031;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.1433;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;MQRankSum=2.265;QD=9.85;ReadPosRankSum=1.458;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:2,38:41:51:437,51,0 chrVII 541808 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=18.57;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1017,120,0 chrVII 541822 . T C 931 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=16.93;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:964,114,0 chrVII 541834 . T C 981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;MQRankSum=-1.721;QD=16.08;ReadPosRankSum=2.329;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1014,120,0 chrVII 541839 . A G 1025 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=15.77;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1058,126,0 chrVII 541951 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=15.37;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1155,129,0 chrVII 542004 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=17.37;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1822,201,0 chrVII 542038 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.50;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3041,330,0 chrVII 542099 . A C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=4.936;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.706;QD=22.54;ReadPosRankSum=1.629;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3098,360,0 chrVII 542154 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=25.52;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3751,402,0 chrVII 542283 . C T 5084.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.76;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5084,576,0 chrVII 542388 . G A 5330.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5330,594,0 chrVII 542462 . A C 6807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=297;Dels=0.00;FS=9.344;HaplotypeScore=16.5583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.908;QD=22.92;ReadPosRankSum=2.956;SB=-3.735e+03 GT:AD:DP:GQ:PL 1/1:3,293:297:99:6807,777,0 chrVII 542571 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=187;Dels=0.00;FS=3.029;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.482;QD=22.15;ReadPosRankSum=2.410;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4142,468,0 chrVII 542869 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=135;Dels=0.00;FS=6.797;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.339;QD=22.50;ReadPosRankSum=2.377;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3070,351,0 chrVII 543202 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.35;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2648,297,0 chrVII 543267 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.01;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2256,252,0 chrVII 543283 . C A 2127 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.93;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2160,243,0 chrVII 543314 . G T 1403 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0544;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.22;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1436,165,0 chrVII 543406 . C A 668 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.65;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:701,78,0 chrVII 543417 . G A 506 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.46;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:539,60,0 chrVII 543476 . A T 1669 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.19;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1702,186,0 chrVII 543552 . C G 1515 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.70;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1548,177,0 chrVII 543560 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.56;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1696,186,0 chrVII 543683 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3044,345,0 chrVII 543813 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.1071;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.21;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4358,474,0 chrVII 544219 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.68;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1572,180,0 chrVII 544222 . C T 1493 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.64;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1526,168,0 chrVII 544286 . T G 1257 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.27;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1290,147,0 chrVII 544288 . G T 1294 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.57;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1327,144,0 chrVII 544298 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.42;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1266,141,0 chrVII 544341 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.92;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1107,126,0 chrVII 544396 . A G 334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.300;QD=13.36;ReadPosRankSum=1.589;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:1,23:25:42:367,42,0 chrVII 544554 . G T 800 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=40.6092;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.60;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:833,93,0 chrVII 544651 . A C 1301 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;MQRankSum=-1.732;QD=20.65;ReadPosRankSum=1.677;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1334,153,0 chrVII 544660 . T C 1063 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;QD=20.06;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1096,126,0 chrVII 544661 . G A 1124 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;QD=21.21;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1157,129,0 chrVII 544679 . C T 805 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=16.43;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:838,99,0 chrVII 544686 . T A 688 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=15.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:81:721,81,0 chrVII 544845 . C T 558 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=16.1067;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=7.64;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:69:591,69,0 chrVII 544851 . C T 70.51 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=8.3680;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=1.44;SB=-5.352e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:12:103,12,0 chrVII 544952 . T C 1055 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;QD=23.44;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1088,123,0 chrVII 545033 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=22.37;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2360,270,0 chrVII 545097 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=17.76;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1738,198,0 chrVII 545099 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=19.34;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1774,198,0 chrVII 545143 . T A 1037 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=11.52;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1070,123,0 chrVII 545156 . A C 922 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;QD=10.72;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:955,108,0 chrVII 545167 . T C 939 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=0;QD=10.92;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:972,114,0 chrVII 545169 . T A 1010 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;MQRankSum=-1.575;QD=11.48;ReadPosRankSum=1.653;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1043,117,0 chrVII 545175 . G C 1026 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=11.15;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1059,123,0 chrVII 545191 . T C 1474 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3415;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=14.59;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1507,171,0 chrVII 545226 . G C 1876 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=17.8736;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=17.21;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1909,219,0 chrVII 545279 . A T 148.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.01;FS=3.502;HaplotypeScore=100.1209;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-0.124;QD=1.31;ReadPosRankSum=1.639;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:21:181,21,0 chrVII 545319 . T A 3178 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=21.33;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3211,357,0 chrVII 545471 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.37;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2650,291,0 chrVII 545528 . T C 3090 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.46;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3123,357,0 chrVII 545648 . G A 2048 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.09;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2081,228,0 chrVII 545844 . T C 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.018;QD=20.82;ReadPosRankSum=1.696;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2053,237,0 chrVII 545870 . T C 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.609;QD=21.42;ReadPosRankSum=1.668;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2368,270,0 chrVII 546179 . T C 154.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.386;DP=114;Dels=0.00;FS=1.119;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=52.50;MQ0=0;MQRankSum=-3.472;QD=1.35;ReadPosRankSum=-5.111;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:96,15:114:65:184,0,65 chrVII 546380 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=4.367;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;MQRankSum=-1.591;QD=14.61;ReadPosRankSum=1.704;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1830,213,0 chrVII 546385 . T C 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;MQRankSum=-1.705;QD=14.05;ReadPosRankSum=1.705;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:1831,207,0 chrVII 546392 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.7189;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=13.65;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1889,207,0 chrVII 546422 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=12.87;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2118,231,0 chrVII 546433 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.979;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;MQRankSum=-1.333;QD=11.97;ReadPosRankSum=1.690;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:2020,231,0 chrVII 546593 . C T 7137.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=14.9126;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=24.44;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:7137,792,0 chrVII 546668 . T C 4940.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.5099;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.77;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4940,561,0 chrVII 546759 . C T 5454.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.06;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5454,597,0 chrVII 546767 . C T 5649.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.32;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5649,612,0 chrVII 546929 . G A 4909.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.0808;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.31;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4909,555,0 chrVII 547656 . T C 7402.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.01;FS=0.000;HaplotypeScore=90.3776;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.39;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,337:341:99:7402,843,0 chrVII 547690 . A T 7209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.587;QD=21.71;ReadPosRankSum=2.420;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:2,330:332:99:7209,822,0 chrVII 547744 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.7154;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.278;QD=21.01;ReadPosRankSum=2.324;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4096,468,0 chrVII 547892 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.010;QD=18.64;ReadPosRankSum=2.411;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2382,273,0 chrVII 547958 . T A 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.610;QD=18.49;ReadPosRankSum=1.488;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1346,153,0 chrVII 547962 . T A 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.628;DP=71;Dels=0.00;FS=22.890;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.403;QD=17.73;ReadPosRankSum=3.835;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:6,65:71:99:1292,147,0 chrVII 548025 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.12;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1883,213,0 chrVII 548503 . T C 6309.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=21.6649;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.39;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,291:295:99:6309,720,0 chrVII 549148 . T C 3135 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.1766;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.08;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3168,372,0 chrVII 549178 . T C 3208 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.43;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3241,369,0 chrVII 549493 . T C 4321.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.27;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4321,504,0 chrVII 549556 . C A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.65;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3782,417,0 chrVII 549656 . T C 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.260;QD=22.88;ReadPosRankSum=1.696;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4462,513,0 chrVII 550438 . A C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.594;QD=20.67;ReadPosRankSum=1.707;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2865,324,0 chrVII 551439 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3906,441,0 chrVII 551635 . A G 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.876;DP=134;Dels=0.00;FS=10.873;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.125;QD=18.57;ReadPosRankSum=4.017;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:6,127:134:99:2522,288,0 chrVII 552400 . C A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.2038;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.13;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3972,450,0 chrVII 552998 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.184;QD=21.33;ReadPosRankSum=1.713;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3840,438,0 chrVII 553024 . T C 4589.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.0659;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.44;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4589,537,0 chrVII 553132 . T C 6353.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.10;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:6353,729,0 chrVII 553711 . T C 4849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=221;Dels=0.00;FS=2.558;HaplotypeScore=13.3437;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.619;QD=21.94;ReadPosRankSum=2.922;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:3,216:221:99:4849,564,0 chrVII 553821 . C A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.06;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4211,465,0 chrVII 553824 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.47;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4237,468,0 chrVII 553967 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.728;DP=130;Dels=0.00;FS=4.886;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.323;QD=19.47;ReadPosRankSum=3.776;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:5,124:130:99:2564,297,0 chrVII 553998 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.46;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2570,285,0 chrVII 554163 . A G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=102;Dels=0.00;FS=4.245;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.394;QD=22.45;ReadPosRankSum=1.664;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2323,267,0 chrVII 554830 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.63;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4118,456,0 chrVII 554853 . T C 3987.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.91;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3987,456,0 chrVII 555174 . C G 1901 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.20;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1934,222,0 chrVII 555176 . A G 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=2.845;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=1.231;QD=19.43;ReadPosRankSum=2.346;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1879,219,0 chrVII 555212 . C T 458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.041;DP=51;Dels=0.00;FS=2.548;HaplotypeScore=5.0633;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.757;QD=8.98;ReadPosRankSum=-2.002;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:3,47:51:54:491,54,0 chrVII 555457 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.79;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1628,183,0 chrVII 555471 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.17;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1642,186,0 chrVII 555500 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.24;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1399,156,0 chrVII 556054 . T C 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-0.231;QD=18.33;ReadPosRankSum=1.097;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2233,255,0 chrVII 556096 . A G 2604 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.45;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2637,300,0 chrVII 556224 . A G 3164 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=8.8774;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=22.28;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3197,366,0 chrVII 556282 . A G 269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=124;Dels=0.00;FS=3.802;HaplotypeScore=103.9480;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-1.589;QD=2.17;ReadPosRankSum=1.445;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,23:124:36:302,36,0 chrVII 556817 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1149,123,0 chrVII 556902 . C T 506 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.08;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:60:539,60,0 chrVII 557021 . A T 2232 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.25;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2265,252,0 chrVII 557181 . T A 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=141;Dels=0.00;FS=2.590;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.579;QD=21.97;ReadPosRankSum=2.907;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3131,348,0 chrVII 557243 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=194;Dels=0.00;FS=5.306;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.193;QD=22.38;ReadPosRankSum=2.943;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4341,504,0 chrVII 557367 . T C 3198 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.68;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3231,357,0 chrVII 557437 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.23;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2571,285,0 chrVII 557938 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3005,330,0 chrVII 558082 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.90;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2598,279,0 chrVII 558108 . G A 2200 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.15;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2233,246,0 chrVII 558353 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.00;FS=6.057;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.125;QD=23.67;ReadPosRankSum=2.909;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2897,333,0 chrVII 558806 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3761;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.89;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3020,342,0 chrVII 558809 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=165;Dels=0.00;FS=6.324;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.374;QD=17.88;ReadPosRankSum=2.343;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:2,159:165:99:2984,345,0 chrVII 558946 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.6323;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.58;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2878,318,0 chrVII 558969 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.80;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2792,315,0 chrVII 559210 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.38;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2405,267,0 chrVII 559269 . G C 2406 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.87;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2439,279,0 chrVII 559498 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=20.83;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2137,234,0 chrVII 559914 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2224;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.74;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3422,390,0 chrVII 560083 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4773,543,0 chrVII 560220 . G C 3005 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.90;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3038,342,0 chrVII 560364 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.4274;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.56;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3632,402,0 chrVII 560455 . T C 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=137;Dels=0.00;FS=3.034;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.678;QD=20.93;ReadPosRankSum=2.377;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2900,333,0 chrVII 560495 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.91;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2920,321,0 chrVII 560505 . T A 2912 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.41;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2945,321,0 chrVII 560511 . T G 2754 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=18.24;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2787,321,0 chrVII 560525 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=17.40;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2626,300,0 chrVII 560747 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.00;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3360,372,0 chrVII 561189 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2804,303,0 chrVII 561585 . A C 2064 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=20.64;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2097,252,0 chrVII 561629 . T G 1809 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=21.80;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1842,216,0 chrVII 561630 . C A 1877 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=22.35;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1910,219,0 chrVII 561645 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=42.5649;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=22.26;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1591,186,0 chrVII 561744 . A G 911 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=1.395;QD=22.22;ReadPosRankSum=1.648;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,40:41:99:944,111,0 chrVII 561745 . A C 944 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=-1.733;QD=23.60;ReadPosRankSum=1.646;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:99:977,111,0 chrVII 561747 . G T 982 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=25.18;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1015,111,0 chrVII 561756 . G A 1043 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=19.31;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1076,120,0 chrVII 561763 . C T 1101 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=0;QD=18.66;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1134,126,0 chrVII 561780 . A G 1243 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;QD=17.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1276,150,0 chrVII 561783 . C G 1224 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;QD=17.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1257,150,0 chrVII 567764 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=5.6883;MLEAC=1;MLEAF=0.500;MQ=31.40;MQ0=1;MQRankSum=-1.231;QD=2.05;ReadPosRankSum=0.358;SB=0.061 GT:AD:DP:GQ:PL 0/1:2,4:6:39:42,0,39 chrVII 567765 . G T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=5.6883;MLEAC=1;MLEAF=0.500;MQ=34.40;MQ0=0;MQRankSum=1.026;QD=2.64;ReadPosRankSum=1.026;SB=7.092e-03 GT:AD:DP:GQ:PL 0/1:2,2:5:43:43,0,45 chrVII 567829 . T G 246 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=20.50;SB=-1.029e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:33:279,33,0 chrVII 568012 . T G 254 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=19.54;SB=-1.589e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:33:287,33,0 chrVII 568081 . A G 972 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=12.79;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1005,114,0 chrVII 568105 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=17.70;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1520,165,0 chrVII 568130 . G C 1776 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=17.76;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1809,210,0 chrVII 568150 . A G 1840 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=16.88;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1873,213,0 chrVII 568237 . A G 3053 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=23.85;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3086,351,0 chrVII 568323 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=131;Dels=0.00;FS=2.564;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-1.362;QD=22.64;ReadPosRankSum=2.900;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2999,339,0 chrVII 568382 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=23.39;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3415,384,0 chrVII 568421 . G T 2376 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.85;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2409,270,0 chrVII 568463 . T A 1419 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=22.17;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1452,159,0 chrVII 568505 . G C 1146 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.11;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1179,135,0 chrVII 568510 . T C 1170 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=19.83;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1203,135,0 chrVII 568593 . T C 988 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=19.00;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1021,114,0 chrVII 568600 . A C 882 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.60;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:915,105,0 chrVII 568617 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=21.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1091,123,0 chrVII 568662 . G A 626 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=20.87;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:75:659,75,0 chrVII 568669 . A T 491 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;MQRankSum=-0.835;QD=18.19;ReadPosRankSum=1.605;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:1,26:27:60:524,60,0 chrVII 568674 . G C 481 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=21.86;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:60:514,60,0 chrVII 574693 . T C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=5.9319;MLEAC=1;MLEAF=0.500;MQ=26.98;MQ0=2;MQRankSum=0.212;QD=2.40;ReadPosRankSum=-0.212;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:9,6:15:66:66,0,138 chrVII 574702 . T C 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;DP=40;Dels=0.00;FS=3.603;HaplotypeScore=13.6554;MLEAC=1;MLEAF=0.500;MQ=29.24;MQ0=1;MQRankSum=-0.147;QD=0.65;ReadPosRankSum=2.584;SB=-6.509e-03 GT:AD:DP:GQ:PL 0/1:34,6:40:56:56,0,71 chrVII 574716 . C T 161.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=4.03;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:21:194,21,0 chrVII 574721 . T C 194.01 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=4.31;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:27:227,27,0 chrVII 574724 . T C 254 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=5.64;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:33:287,33,0 chrVII 574794 . G C 1014 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=16.62;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1047,120,0 chrVII 574806 . C T 1097 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.98;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1130,123,0 chrVII 574964 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=1.433;QD=22.97;ReadPosRankSum=1.702;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2720,309,0 chrVII 575002 . A C 2382 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1536;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.08;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2415,282,0 chrVII 575073 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.03;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3027,339,0 chrVII 575122 . A G 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=2.968;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.243;QD=21.15;ReadPosRankSum=2.401;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2148,246,0 chrVII 575955 . C T 5082.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.86;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5082,564,0 chrVII 576519 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=20.3903;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.66;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4735,543,0 chrVII 576556 . T C 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.140;QD=21.51;ReadPosRankSum=1.686;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4925,567,0 chrVII 576563 . G A 5032.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.7734;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.88;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5032,576,0 chrVII 576612 . C A 4928.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=25.4787;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.28;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,238:243:99:4928,546,0 chrVII 576979 . A T 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5573;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.653;QD=20.55;ReadPosRankSum=1.601;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2745,303,0 chrVII 577060 . T C 2987 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3020,342,0 chrVII 577161 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;DP=129;Dels=0.00;FS=8.174;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.597;QD=21.73;ReadPosRankSum=3.363;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2836,324,0 chrVII 577533 . A C 4914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=217;Dels=0.00;FS=4.232;HaplotypeScore=11.9462;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.454;QD=22.65;ReadPosRankSum=1.716;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,212:217:99:4914,561,0 chrVII 577564 . C T 5207.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.04;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5207,576,0 chrVII 577801 . A G 4980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=3.602;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.709;QD=22.53;ReadPosRankSum=1.701;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4980,587,0 chrVII 577881 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.0237;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.807;QD=22.34;ReadPosRankSum=1.693;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3955,444,0 chrVII 578137 . C A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.63;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3247,357,0 chrVII 578374 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.0313;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.11;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3172,351,0 chrVII 578479 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6576;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.41;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3629,414,0 chrVII 578572 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.633;QD=22.32;ReadPosRankSum=1.683;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3180,363,0 chrVII 578638 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.43;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3866,423,0 chrVII 578676 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.32;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,149:155:99:3182,348,0 chrVII 578716 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=123;Dels=0.00;FS=10.146;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.271;QD=20.14;ReadPosRankSum=2.943;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2510,285,0 chrVII 578731 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.11;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2403,273,0 chrVII 578856 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.17;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2827,312,0 chrVII 579120 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.63;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3876,444,0 chrVII 579227 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.81;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3238,354,0 chrVII 579240 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=164;Dels=0.00;FS=7.131;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.430;QD=21.90;ReadPosRankSum=2.419;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3591,411,0 chrVII 579282 . T A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.36;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4101,462,0 chrVII 579353 . T C 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=227;Dels=0.00;FS=2.519;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.879;QD=21.63;ReadPosRankSum=2.915;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:3,222:227:99:4909,564,0 chrVII 579376 . G A 4880.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.35;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4880,537,0 chrVII 579423 . C T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.47;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4629,507,0 chrVII 579473 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=193;Dels=0.00;FS=5.886;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.838;QD=19.38;ReadPosRankSum=2.848;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:3740,426,0 chrVII 579474 . G C 3723.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.91;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3723,423,0 chrVII 579508 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=197;Dels=0.00;FS=2.614;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.347;QD=20.15;ReadPosRankSum=2.387;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:3969,453,0 chrVII 579634 . A G 4602.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.56;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4602,522,0 chrVII 579733 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6282;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.129;QD=22.65;ReadPosRankSum=1.712;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3986,462,0 chrVII 579775 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.463;QD=21.17;ReadPosRankSum=1.696;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4086,468,0 chrVII 579785 . T A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.66;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4090,450,0 chrVII 579802 . G T 4025.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.83;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4025,444,0 chrVII 579827 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.212;QD=17.82;ReadPosRankSum=1.697;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:3600,408,0 chrVII 579915 . C T 5149.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.84;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5149,576,0 chrVII 580060 . G A 5014.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.90;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5014,549,0 chrVII 580178 . G T 2901 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.78;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2934,312,0 chrVII 580283 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1743,198,0 chrVII 580322 . G T 1339 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.9227;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.60;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1372,150,0 chrVII 580425 . C G 806 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:38:96:839,96,0 chrVII 581017 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=193;Dels=0.00;FS=3.032;HaplotypeScore=16.1745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.559;QD=21.74;ReadPosRankSum=2.334;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4196,477,0 chrVII 581134 . G C 3640.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.80;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3640,414,0 chrVII 581206 . A G 3202 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.89;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3235,375,0 chrVII 581386 . T G 2463 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.6111;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=18.66;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2496,282,0 chrVII 581392 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.00;FS=2.866;HaplotypeScore=6.0611;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=-1.105;QD=17.59;ReadPosRankSum=2.373;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2320,261,0 chrVII 581442 . A T 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;MQRankSum=-0.213;QD=16.00;ReadPosRankSum=1.705;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2129,231,0 chrVII 581451 . A G 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=127;Dels=0.00;FS=6.630;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=1.259;QD=14.61;ReadPosRankSum=2.157;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:1888,219,0 chrVII 581457 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=13.84;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1818,210,0 chrVII 581464 . T C 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=128;Dels=0.00;FS=9.135;HaplotypeScore=3.5015;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-1.760;QD=15.73;ReadPosRankSum=3.376;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:2046,234,0 chrVII 581660 . C T 4367.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.8800;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.23;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4367,495,0 chrVII 581705 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.70;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4057,447,0 chrVII 581718 . G A 3994.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.6589;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.69;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3994,432,0 chrVII 581814 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.63;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3548,405,0 chrVII 581949 . A G 2172 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.72;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2205,252,0 chrVII 582077 . A G 972 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=22.09;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1005,114,0 chrVII 582172 . C G 1379 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.19;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1412,162,0 chrVII 582233 . T C 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.438;QD=24.05;ReadPosRankSum=1.656;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2222,255,0 chrVII 582291 . A G 3144 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.18;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3177,360,0 chrVII 582395 . A G 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.216;QD=22.16;ReadPosRankSum=1.658;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2116,240,0 chrVII 582429 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1613;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.391;QD=22.66;ReadPosRankSum=2.379;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2390,270,0 chrVII 582548 . C A 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;DP=58;Dels=0.00;FS=25.999;HaplotypeScore=7.2961;MLEAC=1;MLEAF=0.500;MQ=51.92;MQ0=0;MQRankSum=0.808;QD=0.88;ReadPosRankSum=-4.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,13:58:81:81,0,372 chrVII 582552 . T C 518 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=11.02;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:66:551,66,0 chrVII 582594 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.94;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1157,129,0 chrVII 582721 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.22;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1542,168,0 chrVII 582730 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.09;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1319,150,0 chrVII 582790 . A T 983 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.20;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1016,117,0 chrVII 582800 . C T 1035 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.48;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1068,120,0 chrVII 582987 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.66;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2458,273,0 chrVII 583179 . A C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=158;Dels=0.00;FS=3.925;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.294;QD=22.43;ReadPosRankSum=1.688;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3544,411,0 chrVII 583236 . A G 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=4.814;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.288;QD=22.88;ReadPosRankSum=1.715;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4667,534,0 chrVII 583260 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.49;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4663,510,0 chrVII 583757 . C T 5642.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.5999;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.75;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5642,624,0 chrVII 583790 . G T 5353.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.7797;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.78;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5353,579,0 chrVII 583976 . T C 3119 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.81;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3152,372,0 chrVII 583988 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.29;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3130,339,0 chrVII 584249 . G A 2596 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=12.9698;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;QD=22.19;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2629,279,0 chrVII 584298 . T C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=6.120;HaplotypeScore=10.5767;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.673;QD=21.92;ReadPosRankSum=2.394;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2949,333,0 chrVII 584414 . A C 2855 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.84;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2888,324,0 chrVII 584527 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.13;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3156,363,0 chrVII 584635 . A T 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=149;Dels=0.01;FS=9.855;HaplotypeScore=4.7256;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.640;QD=19.57;ReadPosRankSum=2.803;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:2949,333,0 chrVII 584636 . T A 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.400;DP=149;Dels=0.00;FS=4.588;HaplotypeScore=5.4596;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-1.063;QD=19.28;ReadPosRankSum=3.189;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:2906,333,0 chrVII 584653 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=18.66;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2589,303,0 chrVII 584683 . C G 2667 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6518;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.05;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2700,309,0 chrVII 584715 . A G 2958 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.13;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2991,339,0 chrVII 584916 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.20;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3480,396,0 chrVII 585274 . T C 2596 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6874;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.57;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2629,300,0 chrVII 585476 . A G 2385 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.93;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2418,279,0 chrVII 585503 . T C 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=6.468;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.501;QD=21.00;ReadPosRankSum=2.393;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2805,324,0 chrVII 585680 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.87;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2642,300,0 chrVII 585695 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.71;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2394,261,0 chrVII 586087 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=138;Dels=0.00;FS=2.983;HaplotypeScore=7.1533;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.559;QD=21.45;ReadPosRankSum=2.111;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2993,351,0 chrVII 586267 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=20.95;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1939,213,0 chrVII 586397 . T C 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.186;QD=22.39;ReadPosRankSum=1.670;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1309,153,0 chrVII 586992 . A G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.090;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.976;QD=22.95;ReadPosRankSum=1.701;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2580,294,0 chrVII 587013 . G A 2253 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.99;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2286,249,0 chrVII 587061 . T C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.069;QD=20.04;ReadPosRankSum=1.663;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2057,234,0 chrVII 587205 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.31;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2911,312,0 chrVII 587567 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.470;QD=23.51;ReadPosRankSum=1.663;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3573,411,0 chrVII 587646 . A G 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.230;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.385;QD=21.87;ReadPosRankSum=1.711;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3565,414,0 chrVII 587709 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.14;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3379,366,0 chrVII 588024 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.33;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2920,318,0 chrVII 588195 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=167;Dels=0.00;FS=3.336;HaplotypeScore=14.5949;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.230;QD=21.71;ReadPosRankSum=1.419;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3625,414,0 chrVII 588225 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.62;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2928,321,0 chrVII 588489 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.91;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3849,435,0 chrVII 588549 . A G 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=155;Dels=0.00;FS=9.204;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.007;QD=20.33;ReadPosRankSum=2.888;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:3184,372,0 chrVII 588631 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=189;Dels=0.00;FS=3.024;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.501;QD=19.19;ReadPosRankSum=2.398;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3627,414,0 chrVII 588633 . C A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.20;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3859,435,0 chrVII 588807 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.14;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4047,441,0 chrVII 588888 . G T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.9700;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.63;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3482,387,0 chrVII 589047 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.01;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3116,342,0 chrVII 589074 . A C 3139 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.91;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3172,363,0 chrVII 589365 . T C 3058 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7406;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.12;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3091,348,0 chrVII 589377 . C T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.7051;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.17;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3658,402,0 chrVII 589637 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.837;QD=18.89;ReadPosRankSum=1.686;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2886,330,0 chrVII 589764 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=22.82;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3114,339,0 chrVII 589799 . A G 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=0.082;QD=18.91;ReadPosRankSum=1.705;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2491,285,0 chrVII 589803 . T G 2434 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=19.79;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2467,276,0 chrVII 589840 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=116;Dels=0.00;FS=2.280;HaplotypeScore=9.1396;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.461;QD=18.83;ReadPosRankSum=2.940;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2217,255,0 chrVII 590527 . C G 3314.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.01;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3314,366,0 chrVII 590641 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.71;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3338,372,0 chrVII 590923 . T G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=3.345;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.492;QD=22.28;ReadPosRankSum=1.668;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3632,423,0 chrVII 590933 . C A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.06;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3712,405,0 chrVII 591238 . T A 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=143;Dels=0.01;FS=2.896;HaplotypeScore=5.4296;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.926;QD=19.84;ReadPosRankSum=2.380;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2870,318,0 chrVII 591242 . T A 2636 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.8690;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.05;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2669,306,0 chrVII 591689 . C G 5365.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.9482;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.03;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5365,609,0 chrVII 592001 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=146;Dels=0.00;FS=6.111;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.876;QD=22.14;ReadPosRankSum=2.938;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3267,381,0 chrVII 592119 . G C 2481 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.94;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2514,291,0 chrVII 592123 . A T 2543 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.56;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2576,279,0 chrVII 592201 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=18.86;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3032,336,0 chrVII 592225 . A G 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.764;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-0.607;QD=17.63;ReadPosRankSum=1.688;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2801,318,0 chrVII 592241 . C T 68.51 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=131.3842;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=0.45;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:12:101,12,0 chrVII 592271 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=17.51;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2537,282,0 chrVII 592407 . T C 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.776;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.799;QD=22.25;ReadPosRankSum=1.711;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3738,423,0 chrVII 592476 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=155;Dels=0.00;FS=2.587;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.032;QD=23.39;ReadPosRankSum=2.903;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3626,420,0 chrVII 592532 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.43;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4421,483,0 chrVII 592637 . G T 5936.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=11.2550;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.48;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5936,663,0 chrVII 592944 . T A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=21.4916;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.75;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3974,453,0 chrVII 593080 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=166;Dels=0.00;FS=6.100;HaplotypeScore=10.0850;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.916;QD=21.87;ReadPosRankSum=2.390;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3630,411,0 chrVII 593220 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.13;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2046,225,0 chrVII 593299 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.91;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1936,216,0 chrVII 593466 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.57;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2017,222,0 chrVII 593486 . T A 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.520;QD=21.29;ReadPosRankSum=2.399;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2098,228,0 chrVII 593663 . C A 5519.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.2180;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.42;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5519,609,0 chrVII 594021 . G C 3861.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.1970;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.76;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3861,441,0 chrVII 594391 . C A 5095.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.48;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5095,564,0 chrVII 594420 . G A 4487.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.21;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4487,489,0 chrVII 594432 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.0242;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.83;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:4349,486,0 chrVII 594587 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.52;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3714,408,0 chrVII 594654 . G C 2503 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=20.19;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2536,285,0 chrVII 594770 . T A 2070 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=23.26;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2103,231,0 chrVII 594794 . T C 1692 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=20.63;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1725,201,0 chrVII 594798 . A G 1619 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=-0.271;QD=19.51;ReadPosRankSum=1.690;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1652,189,0 chrVII 594802 . T A 1542 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=19.04;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1575,174,0 chrVII 594854 . T C 1089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.960;QD=17.29;ReadPosRankSum=2.372;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1122,129,0 chrVII 594882 . T C 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.237;QD=19.03;ReadPosRankSum=1.687;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1498,171,0 chrVII 594909 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.74;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2468,273,0 chrVII 594933 . T G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.347;QD=21.21;ReadPosRankSum=1.703;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2514,285,0 chrVII 595174 . C A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.55;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3616,411,0 chrVII 595357 . T C 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=205;Dels=0.00;FS=5.731;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.828;QD=21.42;ReadPosRankSum=2.808;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4392,504,0 chrVII 595660 . C T 3991.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.55;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3991,441,0 chrVII 595667 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.52;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3874,426,0 chrVII 595834 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=183;Dels=0.00;FS=6.896;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.275;QD=23.28;ReadPosRankSum=2.423;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4260,486,0 chrVII 595888 . T C 3183 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.58;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3216,369,0 chrVII 595912 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=21.13;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2421,267,0 chrVII 595917 . G C 2167 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.06;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2200,252,0 chrVII 595991 . A G 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.7280;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.787;QD=19.99;ReadPosRankSum=1.703;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2472,288,0 chrVII 596110 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.66;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2019,231,0 chrVII 596127 . T A 1726 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.55;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1759,195,0 chrVII 596214 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.54;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2389,264,0 chrVII 596396 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=126;Dels=0.01;FS=7.125;HaplotypeScore=16.4059;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.998;QD=19.47;ReadPosRankSum=2.228;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,120:125:99:2486,291,0 chrVII 596464 . T C 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=132;Dels=0.00;FS=2.579;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.593;QD=21.33;ReadPosRankSum=2.412;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2849,327,0 chrVII 596505 . T A 2396 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.97;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2429,273,0 chrVII 596510 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.73;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2355,261,0 chrVII 596542 . A G 2074 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.19;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2107,240,0 chrVII 596544 . T C 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=117;Dels=0.00;FS=6.017;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.267;QD=18.06;ReadPosRankSum=2.940;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2146,240,0 chrVII 596681 . C A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.1026;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.59;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3817,426,0 chrVII 596824 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=6.774;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.460;QD=22.21;ReadPosRankSum=2.359;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3642,408,0 chrVII 597022 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=145;Dels=0.00;FS=8.010;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.721;QD=19.98;ReadPosRankSum=3.323;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:4,138:145:99:2930,345,0 chrVII 597103 . A G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.379;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.552;QD=23.10;ReadPosRankSum=1.706;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3152,360,0 chrVII 597126 . G C 2896 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.45;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2929,342,0 chrVII 597187 . T A 2845 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.32;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2878,312,0 chrVII 597202 . T G 2554 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=18.92;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2587,297,0 chrVII 597250 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.30;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2504,282,0 chrVII 597592 . G T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.10;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3812,411,0 chrVII 598397 . C T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.32;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3535,387,0 chrVII 598538 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.02;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2579,282,0 chrVII 598662 . T C 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=90;Dels=0.00;FS=4.179;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.292;QD=20.93;ReadPosRankSum=1.654;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1917,219,0 chrVII 598680 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.29;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1879,210,0 chrVII 598733 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.64;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2547,282,0 chrVII 598948 . C T 97.26 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5330;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=0.91;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:15:130,15,0 chrVII 599081 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.000;QD=21.51;ReadPosRankSum=1.530;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3334,378,0 chrVII 599198 . A C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4983;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=1.069;QD=19.19;ReadPosRankSum=1.642;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2240,252,0 chrVII 599515 . G A 4404.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.2332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4404,489,0 chrVII 599725 . C T 4563.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4563,504,0 chrVII 599815 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=146;Dels=0.00;FS=7.202;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.271;QD=22.51;ReadPosRankSum=2.399;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3287,369,0 chrVII 599896 . C T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3383,381,0 chrVII 600628 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=169;Dels=0.00;FS=8.321;HaplotypeScore=17.4081;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=2.050;QD=20.02;ReadPosRankSum=2.420;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3383,381,0 chrVII 600706 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5973;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.73;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3054,348,0 chrVII 601348 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.2835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2731,306,0 chrVII 601612 . T A 2069 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2102,231,0 chrVII 601696 . A G 2004 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.03;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2037,234,0 chrVII 601780 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=91;Dels=0.00;FS=2.754;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.616;QD=22.55;ReadPosRankSum=2.368;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:2085,240,0 chrVII 601994 . A C 2870 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.33;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2903,336,0 chrVII 602491 . T A 2735 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.60;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2768,306,0 chrVII 602545 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=124;Dels=0.00;FS=6.121;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.894;QD=20.82;ReadPosRankSum=2.943;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2615,300,0 chrVII 602565 . C G 2465 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.61;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2498,285,0 chrVII 603238 . A T 3192 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.13;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3225,363,0 chrVII 603286 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.33;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3647,399,0 chrVII 603502 . C A 2942 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.63;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2975,336,0 chrVII 603547 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2851,315,0 chrVII 603625 . T C 2519 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2552,291,0 chrVII 603795 . C G 2799 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2832,324,0 chrVII 604033 . A G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.713;QD=22.97;ReadPosRankSum=1.698;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2376,270,0 chrVII 604084 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.97;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2208,246,0 chrVII 604120 . C A 2354 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.85;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2387,258,0 chrVII 604147 . A T 2258 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.14;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2291,258,0 chrVII 604770 . G C 2667 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.4956;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.67;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2700,309,0 chrVII 604875 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.485;QD=21.07;ReadPosRankSum=1.701;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2393,273,0 chrVII 605025 . A G 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=117;Dels=0.00;FS=3.125;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.642;QD=20.02;ReadPosRankSum=1.612;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2375,276,0 chrVII 605491 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.59;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3409,381,0 chrVII 605496 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.69;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3247,357,0 chrVII 605648 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.884;QD=21.08;ReadPosRankSum=1.709;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3174,363,0 chrVII 605710 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5351;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.39;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3462,381,0 chrVII 605793 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.164;DP=160;Dels=0.00;FS=12.656;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.148;QD=20.07;ReadPosRankSum=3.404;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:3244,372,0 chrVII 605796 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.21;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3268,369,0 chrVII 605832 . G T 2590 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.92;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2623,285,0 chrVII 605833 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.26;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2595,291,0 chrVII 605941 . T A 3027 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.7416;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;QD=22.26;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3060,333,0 chrVII 606133 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8581;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.14;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3741,426,0 chrVII 606365 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.2486;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.62;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4433,480,0 chrVII 606541 . G T 4677.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.3630;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.86;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4677,510,0 chrVII 606561 . G A 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.924;DP=223;Dels=0.00;FS=3.355;HaplotypeScore=5.4196;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.111;QD=20.18;ReadPosRankSum=1.359;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4500,490,0 chrVII 606799 . C T 4614.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.40;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4614,507,0 chrVII 607146 . A G 2842 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.08;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2875,327,0 chrVII 607245 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=18.40;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2591,294,0 chrVII 607268 . T A 2140 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=17.83;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2173,240,0 chrVII 607269 . T A 2122 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=0;QD=18.61;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2155,240,0 chrVII 607286 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=17.22;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1841,201,0 chrVII 607298 . A G 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.064;DP=90;Dels=0.02;FS=2.337;HaplotypeScore=69.1606;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;MQRankSum=1.796;QD=12.51;ReadPosRankSum=4.064;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:6,82:88:99:1159,132,0 chrVII 607794 . G A 5227.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.63;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5227,570,0 chrVII 608045 . C A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.0801;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.01;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4512,510,0 chrVII 608090 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.754;QD=21.42;ReadPosRankSum=1.691;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3662,429,0 chrVII 608165 . T C 3076 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.97;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3109,357,0 chrVII 608216 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.796;QD=21.67;ReadPosRankSum=1.685;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3262,366,0 chrVII 608221 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.97;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3179,360,0 chrVII 608315 . A G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.454;QD=23.12;ReadPosRankSum=1.701;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2645,303,0 chrVII 608489 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.45;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3306,375,0 chrVII 608548 . A G 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=121;Dels=0.00;FS=6.131;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.155;QD=22.24;ReadPosRankSum=2.367;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2724,312,0 chrVII 608589 . A C 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=120;Dels=0.00;FS=3.039;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.168;QD=21.87;ReadPosRankSum=2.367;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2658,306,0 chrVII 608636 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2981,333,0 chrVII 609044 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=4.179;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.460;QD=22.39;ReadPosRankSum=1.654;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2048,234,0 chrVII 609307 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=68.4443;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.33;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1969,210,0 chrVII 609325 . A T 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=81.1064;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.585;QD=0.43;ReadPosRankSum=1.548;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:9:72,9,0 chrVII 609405 . T C 2076 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.97;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2109,243,0 chrVII 609644 . T C 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=6.1226;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-0.228;QD=22.85;ReadPosRankSum=2.410;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2866,333,0 chrVII 609701 . T A 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=3.609;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;MQRankSum=-0.017;QD=19.60;ReadPosRankSum=1.698;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2013,225,0 chrVII 609711 . C G 1663 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;QD=17.69;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1696,195,0 chrVII 609715 . C G 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.534;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;MQRankSum=-1.299;QD=17.59;ReadPosRankSum=-1.102;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1581,180,0 chrVII 609750 . C A 1057 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=12.58;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1090,123,0 chrVII 609760 . G A 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.017;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;MQRankSum=-1.619;QD=12.32;ReadPosRankSum=0.075;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1166,108,0 chrVII 609887 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.35;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3013,327,0 chrVII 609903 . A G 2705 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=16.01;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2738,327,0 chrVII 609928 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.2808;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=17.40;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3218,357,0 chrVII 609958 . T G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=-0.073;QD=16.53;ReadPosRankSum=1.677;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3190,372,0 chrVII 610218 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=18.3334;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.50;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2588,297,0 chrVII 610674 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.66;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3535,384,0 chrVII 611145 . A G 6721.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=19.8329;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.61;SB=-3.416e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:6721,765,0 chrVII 611214 . C T 7214.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=18.8933;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.13;SB=-4.143e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:7214,795,0 chrVII 611295 . T C 6574.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=10.5509;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.77;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,300:302:99:6574,750,0 chrVII 611358 . T C 4671.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.1668;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.58;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4671,537,0 chrVII 611513 . A G 134.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.885;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=134.2014;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.986;QD=1.40;ReadPosRankSum=-6.418;SB=2.94 GT:AD:DP:GQ:PL 1/1:72,24:96:21:167,21,0 chrVII 612267 . A C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=170;Dels=0.00;FS=2.843;HaplotypeScore=10.9811;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.210;QD=21.16;ReadPosRankSum=2.392;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3597,426,0 chrVII 612759 . C T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.10;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4132,453,0 chrVII 612980 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.52;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3811,429,0 chrVII 613028 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3761,420,0 chrVII 613734 . T G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.87;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3934,441,0 chrVII 613788 . G T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.72;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3415,381,0 chrVII 613946 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3859,426,0 chrVII 613998 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.4126;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.73;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3324,381,0 chrVII 614457 . G A 4408.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.2837;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.29;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4408,486,0 chrVII 614580 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3642,414,0 chrVII 615404 . G C 4482.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.75;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4482,507,0 chrVII 615540 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.61;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4392,483,0 chrVII 615688 . G A 3994.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.50;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3994,438,0 chrVII 615761 . C G 3456.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.33;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,157:162:99:3456,393,0 chrVII 615818 . G T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.14;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4095,465,0 chrVII 615842 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.82;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4062,474,0 chrVII 616021 . C A 2661 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.14;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2694,297,0 chrVII 616159 . A G 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=106;Dels=0.00;FS=3.543;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-1.466;QD=19.18;ReadPosRankSum=1.699;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2066,231,0 chrVII 616580 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.06;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4035,438,0 chrVII 616811 . G A 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=112;Dels=0.00;FS=3.129;HaplotypeScore=14.0912;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.638;QD=20.83;ReadPosRankSum=-1.264;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2366,246,0 chrVII 617037 . C T 4580.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.8744;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.79;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4580,510,0 chrVII 617073 . G A 4689.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.5490;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.54;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4689,513,0 chrVII 617178 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.09;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4071,444,0 chrVII 617292 . A G 2038 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.05;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2071,234,0 chrVII 617675 . T G 2688 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.76;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2721,327,0 chrVII 617861 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=-0.052;QD=20.06;ReadPosRankSum=1.680;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1357,156,0 chrVII 617867 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=19.71;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1275,141,0 chrVII 617973 . A G 995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;MQRankSum=1.866;QD=18.09;ReadPosRankSum=2.360;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1028,120,0 chrVII 618010 . A T 211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=15;Dels=0.00;FS=11.139;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.217;QD=14.07;ReadPosRankSum=2.237;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:3,12:15:27:244,27,0 chrVII 618012 . G T 236 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=13.88;SB=-1.069e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:269,30,0 chrVII 618068 . T C 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-1.127;QD=19.92;ReadPosRankSum=1.677;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1288,150,0 chrVII 618102 . T A 1826 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.01;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1859,198,0 chrVII 618124 . T C 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.316;QD=21.03;ReadPosRankSum=1.686;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1610,186,0 chrVII 618236 . C A 5034.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.1518;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.80;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5034,552,0 chrVII 618272 . C T 5983.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=21.1450;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.65;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5983,669,0 chrVII 618689 . A G 4757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.7299;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.287;QD=22.55;ReadPosRankSum=1.716;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4757,531,0 chrVII 618734 . A G 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.350;QD=22.30;ReadPosRankSum=1.680;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4415,510,0 chrVII 618860 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.87;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3270,357,0 chrVII 618889 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.56;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2875,315,0 chrVII 618946 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.5725;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.39;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2579,282,0 chrVII 618974 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.32;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2378,264,0 chrVII 619061 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.91;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3240,363,0 chrVII 619085 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.92;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3325,363,0 chrVII 619211 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.25;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3744,435,0 chrVII 619238 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.45;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3817,438,0 chrVII 619274 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=173;Dels=0.00;FS=9.898;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.561;QD=20.57;ReadPosRankSum=2.959;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3558,408,0 chrVII 619295 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=162;Dels=0.00;FS=9.361;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.844;QD=19.16;ReadPosRankSum=2.894;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3137,357,0 chrVII 619322 . G C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.06;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3430,390,0 chrVII 619338 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0489;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.65;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3438,390,0 chrVII 619415 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.539;QD=22.51;ReadPosRankSum=1.713;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4120,471,0 chrVII 619777 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.49;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4083,447,0 chrVII 619787 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.57;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4335,477,0 chrVII 620150 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.60;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3196,363,0 chrVII 620222 . T A 2943 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=22.30;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2976,321,0 chrVII 620225 . G T 2786 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;QD=19.48;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2819,303,0 chrVII 620232 . A G 2856 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=19.83;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2889,327,0 chrVII 620260 . A G 2852 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=19.27;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2885,333,0 chrVII 620261 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=19.17;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2889,336,0 chrVII 620294 . A C 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=0.013;QD=20.26;ReadPosRankSum=1.706;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2789,324,0 chrVII 620376 . A G 2409 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=19.75;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2442,279,0 chrVII 620379 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=20.56;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2583,279,0 chrVII 620578 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=132;Dels=0.00;FS=2.900;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.233;QD=21.30;ReadPosRankSum=2.412;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2845,327,0 chrVII 620815 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=6.516;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=-1.364;QD=23.74;ReadPosRankSum=2.386;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3703,423,0 chrVII 620954 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.02;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3182,360,0 chrVII 621137 . A C 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=181;Dels=0.00;FS=3.026;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.576;QD=19.44;ReadPosRankSum=2.409;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3518,399,0 chrVII 621311 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.84;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3244,363,0 chrVII 621807 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.49;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2590,288,0 chrVII 621830 . A G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=3.027;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.701;QD=19.09;ReadPosRankSum=2.411;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2476,285,0 chrVII 621836 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.12;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2461,282,0 chrVII 621861 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.01;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2295,258,0 chrVII 622133 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.7047;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.64;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3211,345,0 chrVII 622186 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2923,315,0 chrVII 622257 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=126;Dels=0.00;FS=2.497;HaplotypeScore=8.9714;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.040;QD=21.14;ReadPosRankSum=2.944;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2697,309,0 chrVII 622289 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=4.506;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.205;QD=20.01;ReadPosRankSum=1.705;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2594,294,0 chrVII 622331 . C A 2445 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.66;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2478,273,0 chrVII 622345 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.60;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2562,282,0 chrVII 622492 . G C 2807 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.20;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2840,327,0 chrVII 622738 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4114,456,0 chrVII 623199 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.11;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4645,504,0 chrVII 623479 . G T 4588.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.1742;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.24;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4588,501,0 chrVII 623527 . T C 4607.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.1944;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.53;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4607,525,0 chrVII 623695 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.161;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.197;QD=20.55;ReadPosRankSum=1.712;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3616,414,0 chrVII 623700 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.05;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3642,399,0 chrVII 624442 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4340,486,0 chrVII 624507 . T C 5933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=248;Dels=0.00;FS=2.523;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.768;QD=23.92;ReadPosRankSum=2.085;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:3,245:248:99:5933,681,0 chrVII 624546 . G A 4948.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.4453;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.34;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4948,543,0 chrVII 624636 . A G 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.431;QD=21.13;ReadPosRankSum=1.700;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4501,507,0 chrVII 625276 . G A 3233.06 SnpCluster AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=15.32;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3267,360,0 chrVII 625277 . G A 3319.01 SnpCluster AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=15.73;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3319,360,0 chrVII 625278 . G A 3304.01 SnpCluster AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=15.96;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3304,360,0 chrVII 625284 . C G 3183 SnpCluster AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.21;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:3216,366,0 chrVII 625309 . C T 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=206;Dels=0.00;FS=2.967;HaplotypeScore=7.7894;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.090;QD=13.32;ReadPosRankSum=1.455;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:2777,315,0 chrVII 625418 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=206;Dels=0.00;FS=2.962;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.030;QD=18.87;ReadPosRankSum=2.402;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:3887,447,0 chrVII 625479 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=17.87;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3573,411,0 chrVII 625898 . A G 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=195;Dels=0.00;FS=2.966;HaplotypeScore=11.2164;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.158;QD=20.53;ReadPosRankSum=2.412;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4004,462,0 chrVII 626137 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.62;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3981,444,0 chrVII 626170 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.69;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3494,387,0 chrVII 626202 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.76;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3961,456,0 chrVII 626682 . C A 2779 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.71;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2812,306,0 chrVII 626724 . C T 2558 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.46;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2591,285,0 chrVII 626794 . A T 3028 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3061,345,0 chrVII 626892 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.20;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2578,288,0 chrVII 626899 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.98;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2500,276,0 chrVII 626947 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.28;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2588,291,0 chrVII 627153 . A G 1093 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.84;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1126,132,0 chrVII 627307 . A G 880 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=14.43;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:913,102,0 chrVII 627323 . C G 584 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=10.07;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:72:617,72,0 chrVII 627328 . A G 508 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=8.016;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;MQRankSum=-1.550;QD=8.91;ReadPosRankSum=1.672;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:63:541,63,0 chrVII 627331 . T C 485 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;MQRankSum=-2.073;QD=8.22;ReadPosRankSum=2.325;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:60:518,60,0 chrVII 627350 . A C 515 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.47;MQ0=0;QD=7.92;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:63:548,63,0 chrVII 627362 . A T 531 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;QD=7.48;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:63:564,63,0 chrVII 627383 . G A 679 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=8.82;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:81:712,81,0 chrVII 627401 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=9.78;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:894,102,0 chrVII 627404 . C T 942 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=10.70;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:975,108,0 chrVII 627440 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=16.30;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1598,174,0 chrVII 627463 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.24;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1711,189,0 chrVII 627743 . A G 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.797;QD=21.48;ReadPosRankSum=1.622;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1429,162,0 chrVII 627746 . T C 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=1.422;QD=21.60;ReadPosRankSum=1.629;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1480,168,0 chrVII 627883 . A G 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=107;Dels=0.00;FS=7.466;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.523;QD=18.45;ReadPosRankSum=1.699;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2007,240,0 chrVII 627896 . T C 2288 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.90;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2321,261,0 chrVII 627924 . A C 2271 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=17.08;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2304,261,0 chrVII 627934 . A C 2075 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=15.72;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2108,240,0 chrVII 628012 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=23.19;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2677,291,0 chrVII 628050 . G T 2436 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.82;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2469,270,0 chrVII 628051 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.05;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2379,273,0 chrVII 628090 . T A 2473 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.02;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2506,282,0 chrVII 628417 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=204;Dels=0.00;FS=6.348;HaplotypeScore=20.1294;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.369;QD=20.91;ReadPosRankSum=2.413;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4266,489,0 chrVII 628498 . C T 4787.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.70;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4787,522,0 chrVII 628553 . C G 4102.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.31;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4102,468,0 chrVII 628576 . A G 3135 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.23;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3168,360,0 chrVII 628627 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=16.51;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2476,282,0 chrVII 628640 . A C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=159;Dels=0.01;FS=2.834;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-0.087;QD=14.33;ReadPosRankSum=2.387;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:2311,264,0 chrVII 628646 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-1.209;QD=16.62;ReadPosRankSum=1.667;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2675,303,0 chrVII 628754 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=151;Dels=0.00;FS=9.389;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.831;QD=22.66;ReadPosRankSum=2.912;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:3,146:151:99:3421,390,0 chrVII 628958 . T A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.57;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3589,393,0 chrVII 629110 . A T 3045 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3078,336,0 chrVII 629203 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2849,318,0 chrVII 629252 . T C 2228 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.6530;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.28;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2261,258,0 chrVII 629348 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2689,300,0 chrVII 629428 . T C 2607 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2640,306,0 chrVII 629474 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.310;QD=23.41;ReadPosRankSum=1.710;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3652,417,0 chrVII 629671 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.44;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4031,450,0 chrVII 629836 . G T 2893 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.75;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2926,324,0 chrVII 629962 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3557,387,0 chrVII 630335 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=14.42;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1547,171,0 chrVII 630340 . C G 1383 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=13.97;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1416,165,0 chrVII 630409 . T C 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=3.532;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-1.078;QD=15.76;ReadPosRankSum=1.667;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1704,195,0 chrVII 630469 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.672;QD=21.58;ReadPosRankSum=1.706;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2946,348,0 chrVII 630496 . A T 3123 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.8264;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=24.40;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3156,345,0 chrVII 630535 . T C 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.777;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=0.049;QD=21.46;ReadPosRankSum=1.633;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2286,258,0 chrVII 630604 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.73;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1715,195,0 chrVII 630680 . G A 1920 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.86;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1953,213,0 chrVII 630686 . C A 1814 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.34;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1847,201,0 chrVII 630709 . G A 1576 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.59;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1609,180,0 chrVII 630817 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1476,162,0 chrVII 630914 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.45;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1891,216,0 chrVII 631257 . A G 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.876;DP=56;Dels=0.00;FS=8.571;HaplotypeScore=4.7435;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.596;QD=19.29;ReadPosRankSum=2.362;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1113,111,0 chrVII 631282 . C T 972 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.25;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1005,111,0 chrVII 631406 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.57;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1545,177,0 chrVII 631474 . T C 1634 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.69;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1667,192,0 chrVII 631532 . A G 1354 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.91;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1387,159,0 chrVII 631547 . A T 1552 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.42;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1585,180,0 chrVII 631584 . C T 2314 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.30;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2347,258,0 chrVII 631589 . G C 2217 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.7403;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.79;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2250,255,0 chrVII 631912 . G T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3627,408,0 chrVII 632038 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=140;Dels=0.00;FS=5.632;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.137;QD=20.69;ReadPosRankSum=1.707;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2930,333,0 chrVII 632060 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.76;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2840,318,0 chrVII 632357 . C A 2884 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.83;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2917,321,0 chrVII 632457 . T C 2224 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2257,255,0 chrVII 633019 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=148;Dels=0.00;FS=10.454;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.504;QD=21.40;ReadPosRankSum=2.938;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:3200,372,0 chrVII 633090 . C A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.81;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3809,414,0 chrVII 633217 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.35;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3053,330,0 chrVII 633626 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=3.214;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.287;QD=21.75;ReadPosRankSum=1.700;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2425,279,0 chrVII 633803 . T C 2403 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.08;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2436,282,0 chrVII 633894 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=113;Dels=0.00;FS=9.267;HaplotypeScore=3.1810;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.117;QD=19.14;ReadPosRankSum=3.317;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:4,109:113:99:2196,249,0 chrVII 633895 . T G 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.197;QD=20.34;ReadPosRankSum=1.669;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2311,261,0 chrVII 633985 . A T 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.286;QD=21.10;ReadPosRankSum=1.705;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2713,303,0 chrVII 634428 . A G 3137 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.91;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3170,363,0 chrVII 634525 . G A 2423 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.52;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2456,270,0 chrVII 634549 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.30;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2509,276,0 chrVII 634798 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.00;FS=3.893;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.014;QD=21.87;ReadPosRankSum=1.704;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2811,321,0 chrVII 634898 . G T 2347 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.96;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2380,261,0 chrVII 635112 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.357;QD=23.74;ReadPosRankSum=1.677;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3048,345,0 chrVII 635145 . A C 2408 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2441,279,0 chrVII 635290 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.07;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2294,258,0 chrVII 635353 . A G 916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.673;QD=15.79;ReadPosRankSum=1.673;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:99:949,111,0 chrVII 635537 . T A 47.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.85;SB=-5.221e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:80,9,0 chrVII 635585 . T G 314 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:39:347,39,0 chrVII 635622 . A G 665 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:30:81:698,81,0 chrVII 635861 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.85;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3339,363,0 chrVII 636413 . A T 2718 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.65;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2751,306,0 chrVII 636660 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.41;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3697,432,0 chrVII 636683 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.5816;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.23;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4019,453,0 chrVII 636716 . T G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.115;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.082;QD=20.59;ReadPosRankSum=1.711;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3480,396,0 chrVII 636810 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3875,438,0 chrVII 637449 . C T 3971.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.36;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3971,444,0 chrVII 637458 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.841;QD=22.73;ReadPosRankSum=1.671;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3909,441,0 chrVII 637614 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.61;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2753,303,0 chrVII 637650 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=9.0338;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.84;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,95:100:99:1936,219,0 chrVII 637716 . A G 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=21.1664;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.223;QD=14.47;ReadPosRankSum=2.109;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1422,149,0 chrVII 637771 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.13;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2531,282,0 chrVII 637913 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.23;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2238,255,0 chrVII 637960 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.26;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2816,306,0 chrVII 638253 . T C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.802;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.179;QD=19.17;ReadPosRankSum=1.708;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2832,327,0 chrVII 638266 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=18.58;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2838,309,0 chrVII 638620 . G A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.34;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4113,459,0 chrVII 638787 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.282;QD=22.35;ReadPosRankSum=1.713;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3956,462,0 chrVII 638835 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.11;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3462,393,0 chrVII 638846 . A T 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=157;Dels=0.00;FS=6.217;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.337;QD=20.55;ReadPosRankSum=2.387;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3260,360,0 chrVII 638935 . A G 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=186;Dels=0.00;FS=2.967;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.843;QD=21.74;ReadPosRankSum=2.370;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4044,468,0 chrVII 639145 . G C 4195.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.7539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.96;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4195,480,0 chrVII 639686 . A C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.967;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=164.0227;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=1.926;QD=0.18;ReadPosRankSum=-4.879;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:101,11:113:50:50,0,223 chrVII 639690 . A C 205.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;DP=112;Dels=0.00;FS=5.553;HaplotypeScore=14.1496;MLEAC=1;MLEAF=0.500;MQ=55.17;MQ0=0;MQRankSum=0.794;QD=1.83;ReadPosRankSum=5.775;SB=-5.880e+02 GT:AD:DP:GQ:PL 0/1:16,96:112:99:235,0,99 chrVII 639946 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4416;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.62;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2973,327,0 chrVII 640411 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.25;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2732,300,0 chrVII 640432 . A G 2373 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.57;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2406,276,0 chrVII 640786 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.654;QD=22.32;ReadPosRankSum=2.349;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3839,441,0 chrVII 640849 . G A 5335.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.86;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5335,594,0 chrVII 642042 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.9761;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.24;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3581,405,0 chrVII 642144 . C A 5061.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.39;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5061,573,0 chrVII 642162 . G A 5346.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.91;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5346,591,0 chrVII 642168 . A G 4710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.969;QD=19.87;ReadPosRankSum=1.688;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4710,540,0 chrVII 642195 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.16;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4537,504,0 chrVII 642227 . A C 3870.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.6121;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.43;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3870,441,0 chrVII 642373 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=4.429;HaplotypeScore=16.0400;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.142;QD=21.93;ReadPosRankSum=1.675;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4036,456,0 chrVII 642480 . A G 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=190;Dels=0.00;FS=3.024;HaplotypeScore=10.6287;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.995;QD=21.81;ReadPosRankSum=2.398;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4143,474,0 chrVII 642569 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.146;DP=163;Dels=0.00;FS=13.103;HaplotypeScore=5.5641;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-1.333;QD=19.45;ReadPosRankSum=3.405;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:4,158:163:99:3204,366,0 chrVII 642577 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.29;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3158,345,0 chrVII 642606 . A T 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=156;Dels=0.00;FS=8.345;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.559;QD=19.83;ReadPosRankSum=2.324;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3126,345,0 chrVII 642723 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.61;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2759,324,0 chrVII 642731 . G C 3200 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.62;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3233,366,0 chrVII 643019 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.50;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2665,300,0 chrVII 643708 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=21.79;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4206,462,0 chrVII 643727 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.654;QD=18.75;ReadPosRankSum=1.635;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3356,381,0 chrVII 643743 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.3065;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.208;QD=18.08;ReadPosRankSum=1.692;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3215,372,0 chrVII 644097 . A T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4396,489,0 chrVII 644388 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3365,381,0 chrVII 644711 . G T 1481 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.10;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1514,171,0 chrVII 645493 . T G 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.229;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.369;QD=20.74;ReadPosRankSum=1.694;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3796,441,0 chrVII 645676 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.37;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3254,372,0 chrVII 645955 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.80;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4098,465,0 chrVII 645958 . G T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.14;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4101,462,0 chrVII 646006 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=18.0094;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.07;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3356,366,0 chrVII 646047 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=189;Dels=0.00;FS=5.782;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.565;QD=17.31;ReadPosRankSum=2.930;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:3271,366,0 chrVII 646051 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.40;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3428,372,0 chrVII 646177 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.222;DP=213;Dels=0.00;FS=5.234;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.526;QD=20.21;ReadPosRankSum=3.287;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:4,208:213:99:4305,498,0 chrVII 646525 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=194;Dels=0.00;FS=9.168;HaplotypeScore=17.8609;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.328;QD=20.60;ReadPosRankSum=3.415;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:3996,459,0 chrVII 646696 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=193;Dels=0.00;FS=2.816;HaplotypeScore=15.3767;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=2.115;QD=21.58;ReadPosRankSum=2.180;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4165,480,0 chrVII 646899 . A G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=153;Dels=0.00;FS=2.522;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=-0.243;QD=20.71;ReadPosRankSum=2.915;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3202,366,0 chrVII 647015 . T C 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=98;Dels=0.00;FS=5.199;HaplotypeScore=4.1569;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.144;QD=17.95;ReadPosRankSum=1.696;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1792,207,0 chrVII 647032 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=15.38;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1448,165,0 chrVII 647038 . T C 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.405;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.602;QD=17.14;ReadPosRankSum=1.694;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1610,186,0 chrVII 647261 . A G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=4.363;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.049;QD=23.51;ReadPosRankSum=1.708;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3362,375,0 chrVII 647366 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.11;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3130,354,0 chrVII 647545 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.11;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3264,366,0 chrVII 647725 . T G 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=172;Dels=0.00;FS=2.921;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.893;QD=23.55;ReadPosRankSum=2.407;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4051,456,0 chrVII 647762 . G T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4098,453,0 chrVII 647897 . T A 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=3.189;HaplotypeScore=7.4598;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=1.002;QD=19.75;ReadPosRankSum=1.701;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4424,504,0 chrVII 647900 . A G 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=222;Dels=0.00;FS=9.211;HaplotypeScore=8.0043;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.731;QD=20.11;ReadPosRankSum=2.932;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:4465,507,0 chrVII 648077 . T G 5497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.063;QD=22.08;ReadPosRankSum=1.718;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5497,627,0 chrVII 648107 . T C 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=220;Dels=0.00;FS=3.029;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.519;QD=20.45;ReadPosRankSum=2.383;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4500,531,0 chrVII 648308 . T C 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=4.949;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.570;QD=19.78;ReadPosRankSum=1.594;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3040,357,0 chrVII 648788 . T C 2701 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3025;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=8;QD=20.16;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:2734,315,0 chrVII 648839 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=148;Dels=0.00;FS=7.599;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=1.021;QD=20.33;ReadPosRankSum=2.383;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3042,360,0 chrVII 648936 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;QD=22.96;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3674,393,0 chrVII 648995 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.0702;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.912;QD=21.27;ReadPosRankSum=1.706;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2819,330,0 chrVII 649033 . A C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.923;QD=22.00;ReadPosRankSum=1.707;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3069,345,0 chrVII 649105 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=17.98;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1759,192,0 chrVII 649118 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=55.0910;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=15.25;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1207,132,0 chrVII 649151 . T G 1530 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=17.19;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1563,177,0 chrVII 649199 . T A 1921 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=82.4802;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=21.11;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1954,213,0 chrVII 649297 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=22.98;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1343,156,0 chrVII 649387 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.90;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1785,201,0 chrVII 649458 . A G 455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=51;Dels=0.00;FS=3.055;HaplotypeScore=44.0577;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=0.655;QD=8.92;ReadPosRankSum=1.092;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:57:488,57,0 chrVII 649473 . G A 387 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=7.17;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:48:420,48,0 chrVII 649865 . A G 6104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=293;Dels=0.00;FS=2.571;HaplotypeScore=29.7227;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.069;QD=20.83;ReadPosRankSum=2.949;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:3,289:293:99:6104,699,0 chrVII 649907 . G A 7197.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.88;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7197,813,0 chrVII 649985 . C T 5493.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.5972;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.24;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5493,600,0 chrVII 650120 . A G 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=232;Dels=0.00;FS=3.027;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.817;QD=20.56;ReadPosRankSum=2.375;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:2,227:232:99:4769,549,0 chrVII 650144 . G A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.83;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4068,462,0 chrVII 650278 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.901;QD=21.38;ReadPosRankSum=1.714;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4190,474,0 chrVII 650477 . A G 4563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.124;DP=202;Dels=0.00;FS=5.281;HaplotypeScore=20.0278;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.119;QD=22.59;ReadPosRankSum=2.617;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4563,513,0 chrVII 650623 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.1564;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.279;QD=21.49;ReadPosRankSum=1.620;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4019,465,0 chrVII 650709 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.476;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-1.084;QD=20.58;ReadPosRankSum=-1.529;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3520,369,0 chrVII 650723 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.143;QD=20.19;ReadPosRankSum=-0.298;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3264,342,0 chrVII 650728 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.382;QD=20.92;ReadPosRankSum=-0.067;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3254,338,0 chrVII 650898 . C T 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6354;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.866;QD=19.37;ReadPosRankSum=-0.674;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2125,213,0 chrVII 651425 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.84;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3981,462,0 chrVII 651434 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=3.483;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.804;QD=19.44;ReadPosRankSum=1.696;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:3791,435,0 chrVII 651484 . G A 4214.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.9606;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.07;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4214,459,0 chrVII 651712 . C T 4814.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=19.8533;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.82;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4814,534,0 chrVII 651752 . C A 4959.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.0661;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.96;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4959,552,0 chrVII 651809 . A G 4946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=3.299;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.032;QD=22.58;ReadPosRankSum=1.684;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4946,576,0 chrVII 651866 . G A 5600.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.3647;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.76;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5600,618,0 chrVII 652013 . A G 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-1.125;QD=20.18;ReadPosRankSum=1.716;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4400,510,0 chrVII 652017 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.5073;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.39;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4422,489,0 chrVII 652156 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.8367;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.81;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3368,372,0 chrVII 652173 . T G 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=3.529;HaplotypeScore=8.6202;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.346;QD=18.19;ReadPosRankSum=1.667;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:2980,345,0 chrVII 652243 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.7417;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.82;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3748,411,0 chrVII 652295 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.402;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5789;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.581;QD=20.34;ReadPosRankSum=1.531;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2860,330,0 chrVII 652337 . A G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=21.8319;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.361;QD=19.61;ReadPosRankSum=1.684;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2877,333,0 chrVII 652400 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.72;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3280,366,0 chrVII 652601 . T C 6190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.470;QD=22.51;ReadPosRankSum=2.405;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:2,272:275:99:6190,708,0 chrVII 652742 . G A 6239.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.94;SB=-3.290e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6239,690,0 chrVII 652970 . A T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=22.59;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3501,402,0 chrVII 653026 . T A 2201 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=20.01;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2234,261,0 chrVII 653036 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=21.28;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2182,258,0 chrVII 653044 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=21.11;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1933,219,0 chrVII 653058 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=19.78;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1734,198,0 chrVII 653088 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.59;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2030,228,0 chrVII 653157 . T G 2003 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=21.31;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2036,237,0 chrVII 653200 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=15.71;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1211,138,0 chrVII 653216 . C T 960 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=13.52;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:993,114,0 chrVII 653224 . T A 620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.381;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;MQRankSum=0.985;QD=9.25;ReadPosRankSum=1.842;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:5,62:67:53:653,53,0 chrVII 653248 . A C 486 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=8.24;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:58:60:519,60,0 chrVII 653483 . T C 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.6706;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.053;QD=22.53;ReadPosRankSum=1.664;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4641,512,0 chrVII 653526 . A G 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=205;Dels=0.00;FS=9.894;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=1.399;QD=22.15;ReadPosRankSum=2.907;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4541,522,0 chrVII 653750 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=21.66;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2740,306,0 chrVII 653764 . A T 2896 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=20.69;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2929,333,0 chrVII 653791 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=20.03;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2777,309,0 chrVII 653798 . A G 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-1.353;QD=17.32;ReadPosRankSum=1.707;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2423,276,0 chrVII 653839 . A T 2352 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.76;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2385,258,0 chrVII 653930 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.569;QD=23.43;ReadPosRankSum=1.656;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3243,375,0 chrVII 654008 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.8868;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.63;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3403,387,0 chrVII 654094 . T G 6105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=256;Dels=0.00;FS=5.229;HaplotypeScore=10.0489;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.296;QD=23.85;ReadPosRankSum=3.345;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:4,252:256:99:6105,684,0 chrVII 654308 . A T 6637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.349;QD=20.55;ReadPosRankSum=1.721;SB=-4.138e+03 GT:AD:DP:GQ:PL 1/1:1,322:323:99:6637,724,0 chrVII 654320 . T C 5816.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.01;SB=-3.751e+03 GT:AD:DP:GQ:PL 1/1:0,319:323:99:5816,666,0 chrVII 654338 . G A 5430.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=11.7290;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.04;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:0,300:301:99:5430,600,0 chrVII 654500 . T C 4703.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.60;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:4703,531,0 chrVII 654571 . C T 6032.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.18;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:6032,655,0 chrVII 654605 . C T 6376.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=6.9796;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.69;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6376,723,0 chrVII 654873 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.09;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2685,303,0 chrVII 654897 . A T 2632 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.25;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2665,294,0 chrVII 654914 . A T 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=2.974;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.059;QD=18.71;ReadPosRankSum=2.365;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2765,303,0 chrVII 654930 . T C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=6.647;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.960;QD=17.15;ReadPosRankSum=2.414;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2383,276,0 chrVII 655257 . T C 5314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=241;Dels=0.00;FS=2.904;HaplotypeScore=11.1451;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.810;QD=22.05;ReadPosRankSum=2.429;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5314,609,0 chrVII 655347 . T C 5388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=234;Dels=0.00;FS=3.717;HaplotypeScore=11.3777;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.662;QD=23.03;ReadPosRankSum=1.717;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5388,627,0 chrVII 655485 . C T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.4365;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.03;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4027,453,0 chrVII 655509 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.13;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3972,438,0 chrVII 655650 . T C 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=204;Dels=0.00;FS=2.821;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.091;QD=21.89;ReadPosRankSum=2.425;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4465,513,0 chrVII 655680 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.99;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3838,423,0 chrVII 655695 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.571;QD=20.48;ReadPosRankSum=1.676;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3788,426,0 chrVII 655734 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.9469;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.68;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3543,396,0 chrVII 655794 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.68;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4015,447,0 chrVII 655881 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.2695;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.44;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4039,453,0 chrVII 655962 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.80;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4687,522,0 chrVII 656248 . T G 2787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2820,318,0 chrVII 656510 . A T 2845 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6718;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.32;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2878,324,0 chrVII 656566 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.20;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2719,306,0 chrVII 656576 . A T 2839 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.18;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2872,315,0 chrVII 656811 . T A 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=79;Dels=0.00;FS=8.457;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.369;QD=21.56;ReadPosRankSum=3.343;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:4,75:79:99:1736,189,0 chrVII 656877 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=4.607;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.500;QD=20.66;ReadPosRankSum=1.699;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2182,246,0 chrVII 656885 . T C 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.261;QD=20.76;ReadPosRankSum=1.634;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2234,258,0 chrVII 657040 . C G 2328 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.60;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2361,276,0 chrVII 657214 . C A 1889 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.52;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1922,210,0 chrVII 657221 . G A 1999 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.04;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2032,222,0 chrVII 657373 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=116;Dels=0.00;FS=3.886;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.768;QD=21.82;ReadPosRankSum=1.702;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2564,291,0 chrVII 657389 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.92;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2663,294,0 chrVII 657546 . T C 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.436;QD=22.37;ReadPosRankSum=1.607;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3143,357,0 chrVII 657604 . G T 3177 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.19;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3210,354,0 chrVII 657754 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.39;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4030,450,0 chrVII 657835 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.323;QD=23.41;ReadPosRankSum=1.693;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4143,471,0 chrVII 657886 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.59;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4253,489,0 chrVII 657995 . T C 4815.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.89;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4815,549,0 chrVII 658022 . G A 4442.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.7454;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.36;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4442,495,0 chrVII 658639 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.34;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2624,291,0 chrVII 658876 . T A 3135 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.22;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3168,348,0 chrVII 658987 . T C 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=195;Dels=0.00;FS=6.083;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.104;QD=22.75;ReadPosRankSum=2.954;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4437,504,0 chrVII 659167 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.564;QD=22.66;ReadPosRankSum=1.712;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3920,447,0 chrVII 659189 . T A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.87;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3892,426,0 chrVII 659272 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3506,390,0 chrVII 659437 . T C 2843 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.54;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2876,330,0 chrVII 659791 . A G 1960 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.79;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1993,225,0 chrVII 659935 . T A 2424 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.26;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2457,279,0 chrVII 659973 . G T 3068 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=23.97;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3101,342,0 chrVII 660023 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.7359;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.45;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3183,348,0 chrVII 660028 . G T 3037 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.22;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3070,339,0 chrVII 660043 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.07;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2741,309,0 chrVII 660217 . A C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-1.478;QD=19.90;ReadPosRankSum=2.956;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3177,366,0 chrVII 660221 . T C 3057 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=20.25;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3090,371,0 chrVII 660351 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=17.7755;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.08;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3079,342,0 chrVII 660401 . A G 35.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=106;Dels=0.01;FS=4.943;HaplotypeScore=101.6691;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=0.017;QD=0.34;ReadPosRankSum=1.631;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:9:68,9,0 chrVII 660461 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=15.83;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1964,213,0 chrVII 660464 . G C 2000 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=16.67;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2033,237,0 chrVII 660488 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.58;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2716,294,0 chrVII 660617 . C G 2679 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.43;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2712,318,0 chrVII 660643 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.2651;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.94;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3192,342,0 chrVII 660685 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=155;Dels=0.00;FS=10.674;HaplotypeScore=10.3160;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.467;QD=19.12;ReadPosRankSum=2.954;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:2997,342,0 chrVII 660704 . C G 3003 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.50;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3036,348,0 chrVII 660771 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.17;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3916,435,0 chrVII 660786 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-2.050;QD=21.26;ReadPosRankSum=2.425;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4338,492,0 chrVII 660859 . A G 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=229;Dels=0.00;FS=5.261;HaplotypeScore=14.4679;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.670;QD=22.34;ReadPosRankSum=1.701;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,224:229:99:5116,588,0 chrVII 661080 . C T 5111.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2832;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=22.92;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5111,555,0 chrVII 661126 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=5.366;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.282;QD=19.73;ReadPosRankSum=1.715;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4065,459,0 chrVII 661173 . G A 3068 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.30;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3101,342,0 chrVII 661248 . G C 839 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=105.4150;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=7.17;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:872,116,0 chrVII 661266 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;MQRankSum=-0.508;QD=16.49;ReadPosRankSum=1.702;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1946,222,0 chrVII 661281 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=15.67;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1678,186,0 chrVII 661290 . A T 1593 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=15.47;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1626,180,0 chrVII 661343 . A G 2073 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4303;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=19.93;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2106,249,0 chrVII 661442 . C G 947 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=20.15;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:980,114,0 chrVII 661470 . A G 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.90;MQ0=0;MQRankSum=-1.348;QD=21.36;ReadPosRankSum=1.636;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:93:802,93,0 chrVII 661475 . G A 829 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=21.26;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:862,99,0 chrVII 661528 . T A 902 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=20.98;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:935,105,0 chrVII 661628 . C T 500 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=16.13;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:60:533,60,0 chrVII 661642 . G A 566 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=20.21;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,27:28:69:599,69,0 chrVII 661677 . A C 736 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=23.00;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:90:769,90,0 chrVII 661713 . C A 732 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=17.85;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:765,87,0 chrVII 661718 . T C 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=-0.577;QD=16.44;ReadPosRankSum=1.660;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:96:822,96,0 chrVII 661735 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=18.99;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1457,162,0 chrVII 661834 . C A 1477 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.69;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1510,177,0 chrVII 661870 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.30;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2107,234,0 chrVII 661871 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.55;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2108,234,0 chrVII 661892 . T A 1993 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.66;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2026,219,0 chrVII 662069 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.44;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2283,255,0 chrVII 662162 . A G 1772 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.43;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1805,207,0 chrVII 662194 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.13;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1604,177,0 chrVII 662230 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.33;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1590,174,0 chrVII 662566 . A G 2714 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.72;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2747,312,0 chrVII 662582 . C G 2909 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=18.07;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:2942,336,0 chrVII 662980 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.4155;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.20;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2089,234,0 chrVII 663196 . T C 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.930;QD=23.65;ReadPosRankSum=1.696;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2280,261,0 chrVII 663380 . A T 2497 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.50;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2530,276,0 chrVII 664040 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.63;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2447,267,0 chrVII 664043 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.41;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2503,282,0 chrVII 664147 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=12.7805;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.73;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2749,300,0 chrVII 664238 . A G 3098 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.61;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3131,360,0 chrVII 664343 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.61;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3059,348,0 chrVII 664694 . T C 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=3.042;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.479;QD=19.82;ReadPosRankSum=1.707;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2749,315,0 chrVII 664700 . C G 2640 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.47;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2673,306,0 chrVII 664982 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.151;QD=21.63;ReadPosRankSum=1.711;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3655,417,0 chrVII 664995 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.05;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3836,417,0 chrVII 665432 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.31;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4182,462,0 chrVII 665747 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.38;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3955,435,0 chrVII 665893 . A G 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.065;QD=16.13;ReadPosRankSum=2.367;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:1952,225,0 chrVII 665906 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=111;Dels=0.00;FS=2.585;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.318;QD=15.70;ReadPosRankSum=2.919;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:1776,201,0 chrVII 665921 . A G 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-1.677;QD=17.73;ReadPosRankSum=2.377;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:2,100:103:99:1859,213,0 chrVII 666214 . A C 1359 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=11.0715;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.62;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1392,162,0 chrVII 666261 . T A 1663 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.20;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1696,186,0 chrVII 666285 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.22;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1546,168,0 chrVII 666448 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.50;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2688,306,0 chrVII 666496 . A G 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=120;Dels=0.00;FS=9.114;HaplotypeScore=13.8892;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.713;QD=21.97;ReadPosRankSum=2.408;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2669,303,0 chrVII 666547 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.89;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3010,336,0 chrVII 666548 . A G 2892 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.58;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2925,336,0 chrVII 666667 . A C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8303;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.17;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3503,408,0 chrVII 666815 . T G 3109 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.89;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3142,363,0 chrVII 666829 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.24;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2964,336,0 chrVII 666884 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=152;Dels=0.00;FS=12.608;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.033;QD=20.25;ReadPosRankSum=2.820;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3111,351,0 chrVII 667659 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=21.89;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2025,228,0 chrVII 667672 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=21.28;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1927,210,0 chrVII 667708 . A C 2076 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.05;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2109,240,0 chrVII 667714 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.53;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2353,255,0 chrVII 667820 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.79;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1724,195,0 chrVII 667843 . G A 684 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=14.55;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:717,81,0 chrVII 668222 . T A 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.6928;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.661;QD=23.47;ReadPosRankSum=1.708;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3426,381,0 chrVII 668528 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.24;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3057,348,0 chrVII 668593 . C T 3986.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.87;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3986,435,0 chrVII 668797 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.67;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2959,342,0 chrVII 668812 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.02;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2681,300,0 chrVII 669742 . T C 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=195;Dels=0.00;FS=3.021;HaplotypeScore=14.3621;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.690;QD=21.88;ReadPosRankSum=1.918;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4267,501,0 chrVII 669871 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.426;QD=19.27;ReadPosRankSum=3.360;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2461,279,0 chrVII 669892 . T C 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=8.808;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.517;QD=19.89;ReadPosRankSum=1.702;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2320,264,0 chrVII 669952 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=19.43;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2345,255,0 chrVII 669971 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-1.658;QD=17.17;ReadPosRankSum=2.407;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2008,231,0 chrVII 669985 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=17.33;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2009,231,0 chrVII 670080 . G C 2053 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.84;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2086,243,0 chrVII 670151 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.10;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1650,186,0 chrVII 670175 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.65;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1460,165,0 chrVII 670263 . A G 2491 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=22.65;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2524,282,0 chrVII 670287 . A G 2553 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.39;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2586,294,0 chrVII 670291 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=23.00;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2609,288,0 chrVII 670307 . A G 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=112;Dels=0.00;FS=5.054;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-1.889;QD=20.77;ReadPosRankSum=3.269;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:4,108:112:99:2359,270,0 chrVII 670372 . T C 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=88;Dels=0.02;FS=2.828;HaplotypeScore=2.4546;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-1.160;QD=18.14;ReadPosRankSum=2.393;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1629,186,0 chrVII 670374 . C T 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=1.191;QD=17.39;ReadPosRankSum=1.957;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1598,180,0 chrVII 670598 . A G 2811 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.22;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2844,330,0 chrVII 670804 . A G 3031 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.45;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3064,348,0 chrVII 670849 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=157;Dels=0.00;FS=3.094;HaplotypeScore=8.1868;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.783;QD=19.96;ReadPosRankSum=1.710;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3166,366,0 chrVII 670868 . G T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8362;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.58;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3458,378,0 chrVII 670910 . C A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.07;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4130,462,0 chrVII 671038 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=21.35;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2745,303,0 chrVII 671039 . T G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.064;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=0.000;QD=20.08;ReadPosRankSum=1.679;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2643,303,0 chrVII 671106 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.46;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3948,447,0 chrVII 671206 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.99;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3629,417,0 chrVII 671227 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=153;Dels=0.00;FS=5.048;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.840;QD=20.70;ReadPosRankSum=3.402;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3200,363,0 chrVII 671239 . A T 3106 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.53;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3139,345,0 chrVII 671264 . A G 3080 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.01;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3113,354,0 chrVII 671341 . A G 5045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=216;Dels=0.00;FS=7.666;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.990;QD=23.36;ReadPosRankSum=2.403;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:3,210:216:99:5045,576,0 chrVII 671378 . T C 5336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.099;QD=23.30;ReadPosRankSum=1.717;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,226:229:99:5336,606,0 chrVII 671440 . T C 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=200;Dels=0.00;FS=9.363;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.151;QD=21.80;ReadPosRankSum=2.945;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4359,495,0 chrVII 671554 . G A 4953.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.92;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4953,546,0 chrVII 671575 . A G 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=220;Dels=0.00;FS=2.774;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.697;QD=21.42;ReadPosRankSum=2.427;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4713,540,0 chrVII 671602 . C T 4695.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.77;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4695,522,0 chrVII 671638 . G T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=18.22;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3699,414,0 chrVII 671701 . G A 2435 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.7467;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=0;QD=16.34;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2468,276,0 chrVII 671702 . G A 2398 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.7467;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=15.99;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2431,279,0 chrVII 671707 . A G 2107 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.7551;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=0;QD=14.43;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2140,249,0 chrVII 671710 . G A 2112 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.7551;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;QD=14.87;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2145,237,0 chrVII 671749 . T C 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=5.044;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;MQRankSum=-1.401;QD=17.02;ReadPosRankSum=1.672;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1990,222,0 chrVII 671918 . A T 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=-0.200;QD=20.91;ReadPosRankSum=2.377;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1455,159,0 chrVII 671982 . T G 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.400;QD=21.98;ReadPosRankSum=1.666;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,51:54:99:1220,138,0 chrVII 672059 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.16;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1191,129,0 chrVII 672419 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2853,315,0 chrVII 672632 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:4174,444,0 chrVII 672695 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.8528;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.19;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4814,525,0 chrVII 672758 . C T 5647.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.2537;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.86;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5647,627,0 chrVII 672921 . G A 5086.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.91;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5086,558,0 chrVII 673076 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3150,357,0 chrVII 673220 . G A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.52;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4267,468,0 chrVII 673925 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8931;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3929,432,0 chrVII 674153 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2984;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.90;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2946,324,0 chrVII 674753 . C T 4791.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=17.3770;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.81;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4791,531,0 chrVII 674837 . C T 5429.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=20.4261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5429,606,0 chrVII 674888 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.94;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4860,552,0 chrVII 675020 . T C 5564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=245;Dels=0.00;FS=9.356;HaplotypeScore=10.2205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.766;QD=22.71;ReadPosRankSum=2.963;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5564,642,0 chrVII 675230 . C T 5488.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.76;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5488,603,0 chrVII 675399 . A G 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.388;QD=13.33;ReadPosRankSum=2.405;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1513,177,0 chrVII 675404 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=14.01;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1588,180,0 chrVII 675419 . T C 1683 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=15.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1716,195,0 chrVII 675578 . T C 66.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-1.738;QD=5.54;ReadPosRankSum=1.448;SB=-2.751e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:12:99,12,0 chrVII 675599 . C T 127.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=7.95;SB=-2.714e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:160,18,0 chrVII 675606 . C T 151.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=7.95;SB=-2.307e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:21:184,21,0 chrVII 675622 . T C 248 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=10.33;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:33:281,33,0 chrVII 675623 . C G 250 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=10.00;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,24:25:33:283,33,0 chrVII 675625 . C T 261 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=10.44;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:33:294,33,0 chrVII 675850 . G A 4415.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=25.67;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4415,480,0 chrVII 676025 . C T 5441.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.48;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5441,615,0 chrVII 676218 . A T 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=187;Dels=0.00;FS=6.091;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.230;QD=22.24;ReadPosRankSum=2.410;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4158,459,0 chrVII 676517 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.91;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2084,231,0 chrVII 676840 . T G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.63;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3634,411,0 chrVII 676875 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.66;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3554,402,0 chrVII 677169 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=194;Dels=0.00;FS=12.490;HaplotypeScore=11.8421;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.746;QD=21.42;ReadPosRankSum=2.933;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4155,477,0 chrVII 677370 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.32;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3189,351,0 chrVII 677412 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.83;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3068,342,0 chrVII 678099 . C T 628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=75;Dels=0.00;FS=4.102;HaplotypeScore=69.8057;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=0.241;QD=8.37;ReadPosRankSum=1.636;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:75:661,75,0 chrVII 678405 . T A 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.120;QD=23.64;ReadPosRankSum=1.710;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3758,411,0 chrVII 678429 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.45;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3839,411,0 chrVII 678750 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=202;Dels=0.00;FS=7.652;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.979;QD=18.51;ReadPosRankSum=2.413;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:3739,423,0 chrVII 678760 . C A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.0569;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.57;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4299,465,0 chrVII 678853 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.27;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:3893,450,0 chrVII 678864 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.88;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4255,483,0 chrVII 678883 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=192;Dels=0.00;FS=2.816;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=1.267;QD=18.66;ReadPosRankSum=2.295;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3583,414,0 chrVII 679675 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.8961;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.46;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3106,348,0 chrVII 679768 . T C 2627 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2660,303,0 chrVII 679819 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3207,357,0 chrVII 680113 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.17;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2472,270,0 chrVII 680390 . A G 4485.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.88;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4485,519,0 chrVII 680773 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.592;QD=23.20;ReadPosRankSum=1.709;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3480,396,0 chrVII 681013 . G A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4300,474,0 chrVII 681179 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.17;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4234,480,0 chrVII 681411 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=6.1022;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.726;QD=19.05;ReadPosRankSum=1.709;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2910,330,0 chrVII 681415 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.84;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2802,309,0 chrVII 681502 . T C 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=3.036;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.440;QD=23.48;ReadPosRankSum=2.419;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3781,429,0 chrVII 681622 . T A 4811.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.9670;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.07;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4811,549,0 chrVII 681706 . C T 4638.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.88;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4638,516,0 chrVII 681775 . C T 5680.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=11.4157;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.43;SB=-3.633e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:5680,627,0 chrVII 682036 . T A 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.02;FS=3.780;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.436;QD=19.94;ReadPosRankSum=1.703;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2406,273,0 chrVII 682037 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.24;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2442,273,0 chrVII 682084 . T C 2189 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.71;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2222,264,0 chrVII 682208 . T C 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.536;QD=22.07;ReadPosRankSum=1.699;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2372,273,0 chrVII 682258 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.81;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2214,249,0 chrVII 682309 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.49;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2077,231,0 chrVII 682324 . G T 2172 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.40;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2205,243,0 chrVII 682394 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.22;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1752,201,0 chrVII 682466 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.959;QD=21.82;ReadPosRankSum=1.701;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2477,282,0 chrVII 682488 . A T 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.340;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.577;QD=20.99;ReadPosRankSum=1.704;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2615,297,0 chrVII 682525 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.21;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2196,240,0 chrVII 682549 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.88;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2246,246,0 chrVII 682640 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.31;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2487,273,0 chrVII 682758 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=166;Dels=0.00;FS=8.833;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.571;QD=21.86;ReadPosRankSum=2.420;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3629,429,0 chrVII 682848 . T C 2372 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.81;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2405,273,0 chrVII 682964 . A C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.9142;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.338;QD=20.84;ReadPosRankSum=1.690;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3439,402,0 chrVII 683379 . A G 2937 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.54;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2970,339,0 chrVII 683391 . A T 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.377;QD=20.48;ReadPosRankSum=1.657;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2880,315,0 chrVII 684022 . A G 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.673;QD=18.80;ReadPosRankSum=1.675;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2326,264,0 chrVII 684041 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.81;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2390,258,0 chrVII 684308 . T C 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.728;QD=22.18;ReadPosRankSum=1.635;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2406,276,0 chrVII 684441 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.57;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3512,393,0 chrVII 684623 . G T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.5159;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.83;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4338,492,0 chrVII 684687 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.27;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3510,387,0 chrVII 684822 . A G 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1818;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.347;QD=23.65;ReadPosRankSum=1.668;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3832,441,0 chrVII 685328 . T A 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.351;QD=22.08;ReadPosRankSum=1.637;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2440,267,0 chrVII 685491 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.08;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2263,249,0 chrVII 685720 . G T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3602,402,0 chrVII 685827 . A G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=139;Dels=0.00;FS=2.874;HaplotypeScore=8.4125;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.624;QD=22.68;ReadPosRankSum=2.378;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3185,363,0 chrVII 685949 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.54;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2919,318,0 chrVII 686099 . A T 2463 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.63;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2496,276,0 chrVII 686349 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.50;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2553,285,0 chrVII 686539 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.77;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1259,144,0 chrVII 686708 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.50;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1302,147,0 chrVII 686831 . T A 1821 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=26.01;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1854,198,0 chrVII 686883 . G T 1615 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1648,183,0 chrVII 687012 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=19.82;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2193,246,0 chrVII 687013 . T C 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.178;QD=19.67;ReadPosRankSum=1.700;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,106:110:99:2197,249,0 chrVII 687222 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=3.757;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.387;QD=20.14;ReadPosRankSum=1.664;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3094,360,0 chrVII 687223 . A G 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.738;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.593;QD=20.93;ReadPosRankSum=1.639;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3151,354,0 chrVII 687607 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=128;Dels=0.00;FS=2.992;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.298;QD=22.52;ReadPosRankSum=2.354;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2916,333,0 chrVII 687814 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=182;Dels=0.00;FS=7.777;HaplotypeScore=18.1103;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.145;QD=22.95;ReadPosRankSum=2.422;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,177:182:99:4176,474,0 chrVII 688371 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.54;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2187,240,0 chrVII 688494 . T C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=2.898;HaplotypeScore=7.4380;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.223;QD=22.29;ReadPosRankSum=2.397;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2151,246,0 chrVII 688559 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9697;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.99;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2576,297,0 chrVII 688726 . C T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.1815;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.83;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4749,537,0 chrVII 689170 . G T 2477 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2510,285,0 chrVII 689420 . A G 4252.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.16;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4252,477,0 chrVII 689454 . A G 4617.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.44;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4617,528,0 chrVII 689803 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.36;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3533,393,0 chrVII 690010 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=146;Dels=0.00;FS=6.418;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=-0.362;QD=18.45;ReadPosRankSum=2.416;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2727,312,0 chrVII 690018 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=18.56;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2613,291,0 chrVII 690035 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=17.34;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2409,270,0 chrVII 690039 . G C 2243 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=16.14;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2276,258,0 chrVII 690131 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.19;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2807,306,0 chrVII 690262 . T C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=5.6830;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-1.281;QD=21.80;ReadPosRankSum=1.661;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3216,363,0 chrVII 690379 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.38;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2397,273,0 chrVII 690385 . G C 2450 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.44;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2483,288,0 chrVII 690505 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.143;QD=22.27;ReadPosRankSum=1.685;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3274,372,0 chrVII 690540 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.05;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3367,372,0 chrVII 690685 . G A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.19;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3362,369,0 chrVII 690847 . G A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3886,423,0 chrVII 690893 . C T 4315.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.2387;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4315,474,0 chrVII 691114 . G A 4355.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.33;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4355,480,0 chrVII 691249 . T A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7331;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.76;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3323,378,0 chrVII 691370 . C A 3040 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.9732;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.19;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3073,339,0 chrVII 691567 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=156;Dels=0.00;FS=8.200;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.717;QD=22.10;ReadPosRankSum=2.387;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3447,396,0 chrVII 691606 . C G 2968 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3001,354,0 chrVII 691987 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.09;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3150,351,0 chrVII 692182 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.2426;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.262;QD=21.21;ReadPosRankSum=1.706;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2854,330,0 chrVII 692206 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.10;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3237,351,0 chrVII 692218 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.63;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3349,375,0 chrVII 692371 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.23;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3857,438,0 chrVII 692659 . C T 2950 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.85;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2983,324,0 chrVII 692729 . G A 4506.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.53;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4506,516,0 chrVII 692857 . T C 3194 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.13;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3227,372,0 chrVII 692867 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.78;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2913,339,0 chrVII 693366 . T C 3056 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.7327;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.37;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3089,348,0 chrVII 693386 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.60;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2928,333,0 chrVII 693443 . T C 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.616;QD=18.51;ReadPosRankSum=1.675;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2273,258,0 chrVII 693678 . C T 3818.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.86;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3818,420,0 chrVII 693950 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.44;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3923,429,0 chrVII 693977 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.1276;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.23;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4091,447,0 chrVII 694505 . A T 2752 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.74;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2785,306,0 chrVII 694539 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.63;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2792,312,0 chrVII 694708 . C G 2926 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2959,333,0 chrVII 694954 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3733,411,0 chrVII 695091 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.62;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3944,429,0 chrVII 695230 . T A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1904;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.60;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3422,375,0 chrVII 695342 . T C 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=103;Dels=0.00;FS=2.930;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.305;QD=22.64;ReadPosRankSum=2.401;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,99:103:99:2365,270,0 chrVII 695812 . T C 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.537;QD=21.60;ReadPosRankSum=1.692;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3693,432,0 chrVII 696994 . T C 4615.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.7050;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.67;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4615,548,0 chrVII 697513 . T C 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=2.802;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.123;QD=20.36;ReadPosRankSum=2.340;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1865,219,0 chrVII 697514 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.931;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.331;QD=20.19;ReadPosRankSum=1.615;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1830,219,0 chrVII 697547 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.35;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1966,216,0 chrVII 697548 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.73;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2044,222,0 chrVII 697666 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=141;Dels=0.00;FS=2.978;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.037;QD=21.79;ReadPosRankSum=2.415;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3105,351,0 chrVII 697762 . G A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=25.02;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3728,405,0 chrVII 697816 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=195;Dels=0.00;FS=2.579;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.356;QD=20.57;ReadPosRankSum=2.933;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:4011,453,0 chrVII 697829 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.1313;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.74;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4147,474,0 chrVII 697892 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.1470;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.45;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4720,522,0 chrVII 697976 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.485;QD=21.98;ReadPosRankSum=1.713;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4045,462,0 chrVII 698120 . C T 4310.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=21.6429;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.22;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4310,471,0 chrVII 698252 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.569;QD=21.49;ReadPosRankSum=1.658;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3042,351,0 chrVII 698376 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.48;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1992,225,0 chrVII 698504 . A G 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=106;Dels=0.00;FS=12.336;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-1.869;QD=17.31;ReadPosRankSum=2.357;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1868,210,0 chrVII 698507 . T A 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=106;Dels=0.00;FS=2.406;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-0.473;QD=17.92;ReadPosRankSum=3.308;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:4,102:106:99:1932,213,0 chrVII 698531 . A G 1717 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=16.83;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1750,204,0 chrVII 699971 . C A 1752 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=19.04;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1785,201,0 chrVII 700153 . G A 694 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=21.69;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:81:727,81,0 chrVII 700166 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=23.03;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:793,87,0 chrVII 700278 . T C 1372 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.25;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1405,162,0 chrVII 700504 . C G 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.369;QD=22.77;ReadPosRankSum=0.214;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2424,273,0 chrVII 700617 . G A 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.556;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=0.614;QD=19.57;ReadPosRankSum=1.159;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2518,291,0 chrVII 700622 . A C 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;MQRankSum=-0.643;QD=17.86;ReadPosRankSum=1.704;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2248,261,0 chrVII 700638 . T C 1762 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=15.87;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1795,210,0 chrVII 700641 . C A 1844 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=16.32;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1877,213,0 chrVII 700775 . G A 1999 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=19.99;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2032,225,0 chrVII 700791 . T G 1796 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=17.61;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1829,213,0 chrVII 700804 . T C 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.096;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=0;MQRankSum=-0.883;QD=17.41;ReadPosRankSum=1.630;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1809,210,0 chrVII 700828 . A T 1853 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=15.44;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1886,219,0 chrVII 700840 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=15.26;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1986,225,0 chrVII 700916 . T C 2538 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.2708;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=20.47;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2571,303,0 chrVII 701229 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=2.53;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:54,6,0 chrVII 701232 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=27.0622;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;MQRankSum=-0.751;QD=2.64;ReadPosRankSum=0.751;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:1,8:9:6:55,6,0 chrVII 701357 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=20.14;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:899,99,0 chrVII 701385 . A G 811 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=18.86;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:844,96,0 chrVII 701596 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.80;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4364,486,0 chrVII 701914 . T A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.63;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4005,447,0 chrVII 702014 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=19.58;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2344,258,0 chrVII 702018 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=18.89;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2262,255,0 chrVII 702078 . C G 1772 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=15.54;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,109:114:99:1805,207,0 chrVII 702109 . A G 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.130;DP=142;Dels=0.00;FS=19.541;HaplotypeScore=17.8302;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=-2.700;QD=15.75;ReadPosRankSum=4.068;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:6,133:142:99:2270,258,0 chrVII 702115 . G T 2391 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=16.72;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2424,264,0 chrVII 702168 . C A 2985 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.89;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3018,330,0 chrVII 702379 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9951;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.33;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2981,333,0 chrVII 702401 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.36;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2980,330,0 chrVII 702626 . T C 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.971;QD=21.86;ReadPosRankSum=1.694;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2022,234,0 chrVII 702670 . G T 1887 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=90.4849;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.06;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1920,213,0 chrVII 702748 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=16.55;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1853,207,0 chrVII 702790 . A C 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=2.841;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.234;QD=17.95;ReadPosRankSum=1.535;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2205,252,0 chrVII 702791 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.65;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2169,246,0 chrVII 703157 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2770,303,0 chrVII 703857 . T G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.260;QD=23.41;ReadPosRankSum=1.687;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3652,408,0 chrVII 704403 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3196,348,0 chrVII 704949 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.204;DP=179;Dels=0.00;FS=8.382;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.574;QD=21.35;ReadPosRankSum=3.391;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:4,174:179:99:3822,441,0 chrVII 705215 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=34.5433;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=0.31;SB=-5.288e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:6:49,6,0 chrVII 705631 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=2.868;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.534;QD=22.61;ReadPosRankSum=2.399;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3278,381,0 chrVII 705827 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3166,354,0 chrVII 706260 . T C 2992 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.33;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3025,357,0 chrVII 706337 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.82;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2237,255,0 chrVII 706391 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.11;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2390,258,0 chrVII 706439 . T C 1979 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.40;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2012,231,0 chrVII 706640 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.92;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2186,243,0 chrVII 706722 . T C 2563 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.30;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2596,300,0 chrVII 706983 . T A 1890 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.48;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1923,222,0 chrVII 707019 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=17.35;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:935,99,0 chrVII 707026 . C T 738 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=15.70;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:87:771,87,0 chrVII 707096 . T C 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=1.118;QD=18.74;ReadPosRankSum=1.688;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1532,177,0 chrVII 707182 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=21.30;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1013,114,0 chrVII 708403 . G A 74.51 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.71;MQ0=42;QD=1.62;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:12:107,12,0 chrVII 708983 . T C 304 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=10.22;MQ0=95;QD=1.89;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:1,160:161:39:337,39,0 chrVII 708994 . T C 225 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=9.99;MQ0=77;QD=1.72;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,127:131:30:258,30,0 chrVII 709503 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.24;MQ0=45;QD=0.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:50:6:51,6,0 chrVII 709566 . C T 640 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=18.35;MQ0=30;QD=6.46;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:75:673,75,0 chrVII 710037 . T C 996 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=13;QD=18.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1029,117,0 chrVII 710301 . C T 765 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=17.47;MQ0=47;QD=9.33;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:90:798,90,0 chrVII 710655 . C T 4692.01 filter AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.3709;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=25;QD=18.26;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:4692,525,0 chrVII 710949 . T C 1512 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=21.41;MQ0=43;QD=11.91;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,123:127:99:1545,177,0 chrVII 710967 . T G 836 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=31;QD=9.72;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:869,99,0 chrVII 710988 . C T 426 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=44;QD=5.76;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:48:459,48,0 chrVII 710997 . A G 116.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=71;Dels=0.00;FS=21.847;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.10;MQ0=53;MQRankSum=-2.318;QD=1.64;ReadPosRankSum=1.897;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:2,69:71:18:149,18,0 chrVII 711021 . A G 831 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=51;QD=7.99;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:864,99,0 chrVII 711063 . C T 3629.01 filter AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=43;QD=17.28;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3629,399,0 chrVII 711066 . A T 3700.01 filter AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.4413;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=44;QD=16.82;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3700,402,0 chrVII 711348 . T C 1315 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.8238;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=8;QD=16.65;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1348,153,0 chrVII 711525 . T C 69.51 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=14.41;MQ0=30;QD=1.62;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:12:102,12,0 chrVII 711738 . T C 1421 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.604;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=31;MQRankSum=-1.747;QD=14.96;ReadPosRankSum=2.890;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1454,168,0 chrVII 711852 . C T 381 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=24;QD=8.47;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:48:414,48,0 chrVII 712564 . G T 489 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=8.89;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:57:522,57,0 chrVII 712615 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=16.21;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1995,225,0 chrVII 712617 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=16.97;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2086,231,0 chrVII 712668 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=17.62;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2552,294,0 chrVII 712716 . T C 2420 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=22.41;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2453,285,0 chrVII 712739 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=19.93;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2165,243,0 chrVII 712761 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=19.22;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2435,270,0 chrVII 712764 . T C 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.761;QD=18.28;ReadPosRankSum=1.706;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2446,282,0 chrVII 712838 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.765;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.201;QD=22.23;ReadPosRankSum=1.707;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3145,354,0 chrVII 713001 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.126;DP=106;Dels=0.00;FS=1.976;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.259;QD=0.11;ReadPosRankSum=-3.356;SB=-5.876e+01 GT:AD:DP:GQ:PL 1/1:101,4:106:6:43,6,0 chrVII 713260 . T A 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=6.229;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.776;QD=23.13;ReadPosRankSum=2.403;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2485,279,0 chrVII 713420 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6459;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=23.35;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2998,327,0 chrVII 713484 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.77;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3471,387,0 chrVII 713598 . T C 2696 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=21.40;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2729,315,0 chrVII 713616 . A T 2845 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5934;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=20.62;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2878,321,0 chrVII 713633 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=-0.765;QD=18.58;ReadPosRankSum=1.687;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2895,333,0 chrVII 713643 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.6308;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=17.72;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2869,321,0 chrVII 713658 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.4195;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=15.83;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2408,279,0 chrVII 713781 . T C 3764.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.60;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3764,429,0 chrVII 714275 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.34;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3351,366,0 chrVII 714581 . G A 4093.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.2387;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.37;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,177:183:99:4093,453,0 chrVII 714734 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=178;Dels=0.00;FS=8.458;HaplotypeScore=16.8762;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.342;QD=21.54;ReadPosRankSum=3.301;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:4,172:178:99:3835,435,0 chrVII 714842 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.70;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3276,360,0 chrVII 714920 . A T 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=127;Dels=0.00;FS=2.583;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.945;QD=22.34;ReadPosRankSum=2.881;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2870,315,0 chrVII 715022 . T C 2437 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.76;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2470,285,0 chrVII 715093 . C A 1762 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=22.59;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1795,198,0 chrVII 715094 . A G 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.978;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.624;QD=22.09;ReadPosRankSum=2.386;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1734,198,0 chrVII 715153 . G T 1501 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.44;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1534,171,0 chrVII 715250 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=20.42;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1626,186,0 chrVII 715267 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=18.88;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1336,153,0 chrVII 715291 . A T 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;MQRankSum=-0.382;QD=16.88;ReadPosRankSum=1.674;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1029,114,0 chrVII 715298 . T C 833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=4.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;MQRankSum=-0.883;QD=15.72;ReadPosRankSum=1.667;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:866,99,0 chrVII 715306 . T G 858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=3.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;MQRankSum=-0.970;QD=17.16;ReadPosRankSum=1.663;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:891,102,0 chrVII 715330 . T G 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=72;Dels=0.00;FS=3.058;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=1.525;QD=19.15;ReadPosRankSum=2.381;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1412,162,0 chrVII 715387 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=22.16;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2515,276,0 chrVII 715404 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=6.6455;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=21.07;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2625,291,0 chrVII 715444 . T C 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-0.456;QD=19.45;ReadPosRankSum=1.702;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2270,258,0 chrVII 715450 . T A 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;MQRankSum=-0.678;QD=17.46;ReadPosRankSum=2.387;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2093,243,0 chrVII 715532 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=18.77;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1779,198,0 chrVII 715538 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=18.40;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1873,216,0 chrVII 715580 . G T 1676 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=14.70;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1709,195,0 chrVII 715586 . C G 1651 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=14.36;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:1684,195,0 chrVII 715639 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=20.18;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2757,300,0 chrVII 715664 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=146;Dels=0.00;FS=7.647;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=1.221;QD=18.83;ReadPosRankSum=2.415;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:2782,318,0 chrVII 715669 . C G 2780 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7735;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.44;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2813,324,0 chrVII 715745 . T A 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;MQRankSum=-1.121;QD=7.51;ReadPosRankSum=1.681;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1069,120,0 chrVII 715757 . G A 1235 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=8.12;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1268,144,0 chrVII 715781 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=9.17;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:1464,165,0 chrVII 715785 . T C 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;MQRankSum=-1.440;QD=9.19;ReadPosRankSum=1.687;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:1448,174,0 chrVII 715893 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.5499;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=24.14;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3694,417,0 chrVII 716403 . C T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.22;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4110,459,0 chrVII 716490 . G A 4563.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.89;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4563,504,0 chrVII 716666 . T A 2770 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.64;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2803,318,0 chrVII 716827 . C A 2924 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2957,318,0 chrVII 716908 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.12;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2732,300,0 chrVII 716964 . T C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.357;QD=21.59;ReadPosRankSum=1.705;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2753,312,0 chrVII 717036 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.14;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3244,369,0 chrVII 717207 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.86;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3475,384,0 chrVII 717268 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.4090;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.59;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3789,417,0 chrVII 717272 . T A 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.097;QD=20.09;ReadPosRankSum=1.713;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3616,399,0 chrVII 717406 . G T 4018.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.6975;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.57;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4018,441,0 chrVII 717846 . G A 4629.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.9405;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.26;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4629,516,0 chrVII 718302 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=212;Dels=0.00;FS=3.115;HaplotypeScore=8.3184;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.218;QD=20.37;ReadPosRankSum=1.682;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:1,208:212:99:4318,507,0 chrVII 718326 . C T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.79;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3826,432,0 chrVII 718542 . T A 4268.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.6183;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.00;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4268,471,0 chrVII 718558 . C T 4662.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.9659;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.31;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4662,513,0 chrVII 718585 . G A 4613.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.1468;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.69;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4613,510,0 chrVII 718657 . T C 5204.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.24;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5204,597,0 chrVII 718675 . A T 5088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=239;Dels=0.00;FS=7.335;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.015;QD=21.29;ReadPosRankSum=2.408;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:5088,579,0 chrVII 718717 . G C 5310.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=17.7434;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.19;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5310,609,0 chrVII 718778 . G A 6335.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=15.1736;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=23.04;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:6335,705,0 chrVII 718805 . T C 6142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;MQRankSum=0.768;QD=22.42;ReadPosRankSum=1.618;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:6142,714,0 chrVII 718914 . T A 5307.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.49;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5307,582,0 chrVII 718949 . A G 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.446;DP=227;Dels=0.00;FS=17.962;HaplotypeScore=11.2508;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.248;QD=20.54;ReadPosRankSum=4.499;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:7,220:227:99:4663,534,0 chrVII 719000 . A G 3318.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.287;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;MQRankSum=-1.750;QD=16.03;ReadPosRankSum=1.382;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:3318,358,0 chrVII 719008 . T C 3233.06 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;QD=15.77;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3267,369,0 chrVII 719009 . G A 3389.01 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;QD=16.53;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3389,369,0 chrVII 719020 . A G 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;MQRankSum=1.134;QD=14.34;ReadPosRankSum=1.701;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:3187,366,0 chrVII 719031 . T C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=5.399;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;MQRankSum=-0.899;QD=14.72;ReadPosRankSum=1.715;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3109,351,0 chrVII 719036 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=14.75;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3071,339,0 chrVII 719064 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.775;DP=191;Dels=0.00;FS=7.997;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=0.874;QD=16.40;ReadPosRankSum=3.750;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:5,185:191:99:3166,366,0 chrVII 719140 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=1.713;QD=20.87;ReadPosRankSum=1.595;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3757,411,0 chrVII 719144 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.51;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3453,396,0 chrVII 719309 . T G 3821.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.96;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3821,435,0 chrVII 719334 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=3.811;HaplotypeScore=10.1484;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.419;QD=21.57;ReadPosRankSum=1.696;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4099,468,0 chrVII 719651 . G A 5536.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.41;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5536,627,0 chrVII 719700 . G A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.42;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4685,510,0 chrVII 719759 . T C 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=205;Dels=0.00;FS=8.207;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.372;QD=21.54;ReadPosRankSum=2.414;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4415,498,0 chrVII 719894 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.018;DP=165;Dels=0.00;FS=5.867;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.282;QD=20.07;ReadPosRankSum=2.086;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3311,381,0 chrVII 719906 . A G 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.414;DP=158;Dels=0.00;FS=4.324;HaplotypeScore=18.7180;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.355;QD=17.09;ReadPosRankSum=3.114;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:5,153:158:99:2733,327,0 chrVII 720024 . T G 2291 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.97;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2324,267,0 chrVII 720028 . T A 2300 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.56;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2333,255,0 chrVII 720365 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=17.33;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2944,327,0 chrVII 720396 . G A 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.772;DP=176;Dels=0.00;FS=2.493;HaplotypeScore=145.5494;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-1.212;QD=11.23;ReadPosRankSum=2.297;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:2010,225,0 chrVII 720495 . G T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.81;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4197,471,0 chrVII 721728 . A G 2590 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.72;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2623,297,0 chrVII 721791 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.74;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2443,273,0 chrVII 721809 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.69;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2701,297,0 chrVII 722142 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.81;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3398,372,0 chrVII 722160 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=148;Dels=0.00;FS=2.573;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.640;QD=20.08;ReadPosRankSum=2.925;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3005,348,0 chrVII 722169 . A G 2853 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.68;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2886,330,0 chrVII 722556 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.79;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3040,345,0 chrVII 722610 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.8092;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.17;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3476,381,0 chrVII 722637 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.45;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3471,381,0 chrVII 722662 . T A 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=3.552;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.346;QD=23.01;ReadPosRankSum=1.708;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3337,366,0 chrVII 723135 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=172;Dels=0.00;FS=6.306;HaplotypeScore=17.2479;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.309;QD=21.87;ReadPosRankSum=2.392;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3762,426,0 chrVII 723249 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.07;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3507,387,0 chrVII 723300 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.72;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4128,453,0 chrVII 723328 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.4918;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.89;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3896,426,0 chrVII 723984 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=17.4458;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.372;QD=21.42;ReadPosRankSum=1.658;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3984,465,0 chrVII 724101 . G A 6391.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.12;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6391,723,0 chrVII 724434 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4324,489,0 chrVII 724542 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.66;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3407,372,0 chrVII 724567 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.18;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3325,381,0 chrVII 724581 . T C 3189 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.12;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3222,363,0 chrVII 724918 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=23.07;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2409,264,0 chrVII 724939 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=20.44;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2179,240,0 chrVII 725062 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=16.01;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1906,210,0 chrVII 725064 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=15.64;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1910,216,0 chrVII 725111 . T C 2571 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.19;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2604,297,0 chrVII 725139 . A G 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=128;Dels=0.00;FS=20.077;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.271;QD=20.29;ReadPosRankSum=3.726;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:5,123:128:99:2630,303,0 chrVII 725189 . T G 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;MQRankSum=-0.489;QD=18.95;ReadPosRankSum=1.703;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2269,255,0 chrVII 725190 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=120;Dels=0.00;FS=2.857;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-1.271;QD=18.76;ReadPosRankSum=2.326;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2284,258,0 chrVII 725467 . C T 5589.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.50;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5589,612,0 chrVII 725478 . C T 5833.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.54;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:5833,639,0 chrVII 725577 . G A 5938.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=12.7897;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.83;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5938,651,0 chrVII 725589 . G T 5399.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.02;FS=0.000;HaplotypeScore=37.0509;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.68;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5399,603,0 chrVII 725739 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=191;Dels=0.03;FS=3.504;HaplotypeScore=77.3376;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.248;QD=20.47;ReadPosRankSum=0.168;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3909,429,0 chrVII 726186 . A G 4542.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.66;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4542,513,0 chrVII 726262 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.87;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3339,375,0 chrVII 726291 . G A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3206;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.01;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3368,378,0 chrVII 726396 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.98;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2830,321,0 chrVII 726585 . G A 929 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=14.52;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:962,108,0 chrVII 726598 . C A 824 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=13.08;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:857,96,0 chrVII 726602 . A G 860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.182;DP=61;Dels=0.00;FS=7.171;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;MQRankSum=-0.790;QD=14.10;ReadPosRankSum=1.721;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:893,102,0 chrVII 726864 . A C 3024 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.30;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3057,345,0 chrVII 726889 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.0404;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.50;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3341,369,0 chrVII 726929 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=186;Dels=0.00;FS=6.053;HaplotypeScore=12.6909;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.011;QD=20.34;ReadPosRankSum=2.897;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3783,432,0 chrVII 727122 . T A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=24.29;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3960,435,0 chrVII 727210 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=124;Dels=0.00;FS=6.004;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=2.326;QD=20.88;ReadPosRankSum=2.895;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2622,297,0 chrVII 727267 . T A 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.885;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=1.656;QD=21.60;ReadPosRankSum=1.656;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2992,333,0 chrVII 727279 . A G 2773 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=20.24;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2806,318,0 chrVII 727304 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=20.18;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2777,309,0 chrVII 727326 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=17.03;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2400,276,0 chrVII 727337 . A T 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=3.043;HaplotypeScore=101.0054;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=-1.330;QD=15.98;ReadPosRankSum=2.410;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2015,222,0 chrVII 727958 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.50;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2477,282,0 chrVII 727974 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.709;QD=21.58;ReadPosRankSum=1.633;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2320,264,0 chrVII 728685 . A T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.1845;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.47;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4022,441,0 chrVII 728724 . C G 4248.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.2402;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.90;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4248,492,0 chrVII 729111 . A G 4771.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.79;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4771,552,0 chrVII 729333 . T C 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.0700;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.242;QD=20.60;ReadPosRankSum=1.698;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4284,489,0 chrVII 729368 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=197;Dels=0.00;FS=3.456;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.346;QD=18.71;ReadPosRankSum=1.714;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:3686,414,0 chrVII 729374 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.794;DP=199;Dels=0.00;FS=17.145;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.648;QD=18.26;ReadPosRankSum=3.755;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:5,193:199:99:3633,414,0 chrVII 729393 . G T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.64;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3932,432,0 chrVII 729546 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1173;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.01;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3935,426,0 chrVII 729594 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.3754;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.77;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3268,366,0 chrVII 729638 . C G 2836 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.87;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2869,333,0 chrVII 729861 . T A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=24.78;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3469,381,0 chrVII 729983 . T C 2975 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.39;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3008,342,0 chrVII 730017 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.94;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3050,327,0 chrVII 730219 . A T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.64;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3281,360,0 chrVII 730225 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.20;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3125,339,0 chrVII 730465 . A T 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.603;QD=20.86;ReadPosRankSum=1.706;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2828,315,0 chrVII 730599 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3029,333,0 chrVII 730774 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.10;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1842,207,0 chrVII 730905 . A G 1011 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.47;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1044,123,0 chrVII 730967 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=7.289;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.178;QD=23.48;ReadPosRankSum=1.686;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1794,204,0 chrVII 730996 . G T 1708 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.90;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1741,189,0 chrVII 731008 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.91;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1785,207,0 chrVII 731064 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=91.0442;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.11;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1887,210,0 chrVII 731090 . G T 2260 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.32;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2293,252,0 chrVII 731752 . G A 6358.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=11.5170;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.12;SB=-3.689e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:6358,699,0 chrVII 731771 . G A 6161.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.47;SB=-3.844e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:6161,669,0 chrVII 732112 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=17.5337;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.171;QD=20.80;ReadPosRankSum=1.702;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4846,564,0 chrVII 732150 . G T 4609.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.13;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4609,531,0 chrVII 732382 . T A 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.4773;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.274;QD=23.71;ReadPosRankSum=1.694;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4339,468,0 chrVII 732583 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.7568;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.50;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3234,351,0 chrVII 733088 . G T 1561 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.27;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1594,180,0 chrVII 733142 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=17.3915;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=12.61;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1483,168,0 chrVII 733373 . G C 5102.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.38;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5102,588,0 chrVII 733429 . C T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.63;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4105,465,0 chrVII 733453 . G C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.47;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3501,411,0 chrVII 733673 . T A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.17;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3323,369,0 chrVII 733747 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=23.98;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2911,321,0 chrVII 733771 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.27;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2850,324,0 chrVII 733789 . A C 2938 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.72;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2971,339,0 chrVII 733821 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.71;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3226,351,0 chrVII 733930 . A C 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=180;Dels=0.00;FS=3.559;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.713;QD=21.69;ReadPosRankSum=1.713;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:3905,450,0 chrVII 733949 . A C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.95;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3394,393,0 chrVII 733970 . C T 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=162;Dels=0.00;FS=10.306;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=-0.584;QD=19.39;ReadPosRankSum=2.808;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3174,348,0 chrVII 733979 . A G 2925 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.5009;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.75;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2958,339,0 chrVII 734123 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.3855;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.08;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4570,516,0 chrVII 734330 . A T 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.7445;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.117;QD=22.55;ReadPosRankSum=1.811;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4510,504,0 chrVII 734573 . T A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.4375;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.38;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3738,414,0 chrVII 734668 . A T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.19;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3435,378,0 chrVII 734741 . G C 3017 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.39;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3050,345,0 chrVII 734773 . C A 2624 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.51;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2657,291,0 chrVII 734774 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.51;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2679,300,0 chrVII 734831 . G C 2663 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.48;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2696,309,0 chrVII 734870 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2983,345,0 chrVII 734928 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.74;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3457,390,0 chrVII 735204 . G T 47.97 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=0.96;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,50:50:9:80,9,0 chrVII 735253 . G A 436 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=10.63;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:51:469,51,0 chrVII 735279 . T A 571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=0.204;QD=16.79;ReadPosRankSum=1.631;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:69:604,69,0 chrVII 735294 . A G 581 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=16.60;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:69:614,69,0 chrVII 735310 . A G 691 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=16.85;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:81:724,81,0 chrVII 735360 . T C 1271 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=21.18;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1304,147,0 chrVII 735556 . T C 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.848;QD=23.54;ReadPosRankSum=2.375;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3140,360,0 chrVII 735623 . A G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.874;DP=101;Dels=0.00;FS=6.990;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=1;MQRankSum=0.628;QD=23.00;ReadPosRankSum=-0.012;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2356,246,0 chrVII 735628 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.9620;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=1;QD=22.80;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2245,249,0 chrVII 735646 . T C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=1;MQRankSum=1.680;QD=21.24;ReadPosRankSum=1.193;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2093,215,0 chrVII 735681 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=1;MQRankSum=-0.185;QD=18.81;ReadPosRankSum=1.631;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2008,231,0 chrVII 735707 . A T 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.138;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=106.4030;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=1.639;QD=14.64;ReadPosRankSum=3.942;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:6,104:110:99:1643,199,0 chrVII 735738 . A T 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.331;QD=21.92;ReadPosRankSum=1.706;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2905,312,0 chrVII 735892 . C A 1224 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=24.00;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1257,138,0 chrVII 735893 . C G 1158 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=24.12;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1191,135,0 chrVII 735895 . T A 1176 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;QD=25.02;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1209,135,0 chrVII 735936 . T C 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.486;DP=42;Dels=0.00;FS=41.816;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;MQRankSum=3.573;QD=20.05;ReadPosRankSum=3.573;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:5,37:42:99:875,99,0 chrVII 735958 . A G 627 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;MQRankSum=0.129;QD=19.59;ReadPosRankSum=2.780;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,29:32:75:660,75,0 chrVII 735972 . A G 519 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.090;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;MQRankSum=3.094;QD=16.74;ReadPosRankSum=3.153;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:4,27:31:63:552,63,0 chrVII 735976 . T C 480 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.159;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;MQRankSum=3.419;QD=17.14;ReadPosRankSum=2.699;SB=-6.534e-03 GT:AD:DP:GQ:PL 1/1:5,23:28:57:513,57,0 chrVII 736443 . G A 392 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=18.67;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:48:425,48,0 chrVII 736450 . G T 531 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=21.24;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:63:564,63,0 chrVII 736482 . C G 778 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=21.61;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:811,93,0 chrVII 736788 . T A 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.239;QD=23.58;ReadPosRankSum=1.704;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2933,318,0 chrVII 736980 . A C 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=163;Dels=0.00;FS=3.318;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.850;QD=20.56;ReadPosRankSum=1.689;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3351,378,0 chrVII 737187 . T C 2378 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=16.87;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2411,282,0 chrVII 737189 . C A 2567 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=17.95;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2600,285,0 chrVII 737501 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.92;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4258,471,0 chrVII 737579 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3671,417,0 chrVII 737685 . T C 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=196;Dels=0.00;FS=3.016;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.710;QD=23.46;ReadPosRankSum=2.412;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4599,525,0 chrVII 737826 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3351,378,0 chrVII 738004 . T A 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=4.314;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.283;QD=22.69;ReadPosRankSum=1.604;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2483,276,0 chrVII 738084 . A G 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=1.693;QD=20.24;ReadPosRankSum=1.693;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1814,207,0 chrVII 738192 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.34;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3021,345,0 chrVII 738263 . G C 1831 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.06;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1864,213,0 chrVII 738379 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.39;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3006,345,0 chrVII 738466 . T C 2260 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.60;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2293,258,0 chrVII 738493 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.20;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2526,276,0 chrVII 738515 . A C 1710 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=83.2937;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.63;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1743,204,0 chrVII 738565 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=17.80;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1635,180,0 chrVII 738719 . C G 2159 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.03;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2192,252,0 chrVII 738759 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.801;QD=22.66;ReadPosRankSum=1.703;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2730,315,0 chrVII 738795 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=22.50;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2913,333,0 chrVII 738861 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=23.00;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2011,228,0 chrVII 738891 . A T 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=70;Dels=0.00;FS=2.623;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=1.160;QD=22.90;ReadPosRankSum=2.813;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1636,183,0 chrVII 739067 . C G 596 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=11.04;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:72:629,72,0 chrVII 739070 . C A 640 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=11.43;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:75:673,75,0 chrVII 739081 . T C 892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;MQRankSum=-0.626;QD=12.39;ReadPosRankSum=1.684;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:925,108,0 chrVII 739263 . T A 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;MQRankSum=-0.724;QD=16.36;ReadPosRankSum=1.669;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2732,294,0 chrVII 739273 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=15.75;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:2883,315,0 chrVII 739321 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.38;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3346,372,0 chrVII 739469 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.1085;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=20.09;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3756,417,0 chrVII 739476 . C G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0489;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=19.51;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3414,384,0 chrVII 739622 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=2.668;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.179;QD=21.24;ReadPosRankSum=2.394;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3760,423,0 chrVII 740024 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.42;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2937,327,0 chrVII 740339 . T C 5165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.0407;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.180;QD=22.07;ReadPosRankSum=1.672;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5165,603,0 chrVII 740372 . T C 5359.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.5411;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.80;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5359,606,0 chrVII 740621 . T A 6590.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=15.1950;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.05;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6590,729,0 chrVII 740852 . A G 4901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=250;Dels=0.00;FS=2.588;HaplotypeScore=12.3903;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.587;QD=19.60;ReadPosRankSum=2.361;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:4901,555,0 chrVII 740939 . C T 5049.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=18.8898;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.04;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5049,546,0 chrVII 740993 . A G 3926.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.132;DP=232;Dels=0.00;FS=14.549;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=-1.833;QD=16.92;ReadPosRankSum=4.157;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:6,226:232:99:3926,450,0 chrVII 741000 . A C 3759.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=-0.272;QD=16.63;ReadPosRankSum=1.701;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:1,222:226:99:3759,438,0 chrVII 741002 . A G 3887.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=235;Dels=0.00;FS=6.062;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;MQRankSum=-0.753;QD=16.54;ReadPosRankSum=2.952;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:3,229:235:99:3887,438,0 chrVII 741047 . C T 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=0.751;QD=17.08;ReadPosRankSum=0.229;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:3775,414,0 chrVII 741068 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.08;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4036,444,0 chrVII 741326 . T C 4933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.0476;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.370;QD=20.99;ReadPosRankSum=1.688;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:4933,570,0 chrVII 741442 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.36;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4321,477,0 chrVII 741692 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1977,222,0 chrVII 742069 . T C 1724 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.77;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1757,201,0 chrVII 742081 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.61;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1599,177,0 chrVII 742219 . A T 1007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;MQRankSum=-1.075;QD=14.39;ReadPosRankSum=2.380;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1040,114,0 chrVII 742255 . G A 968 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=13.26;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1001,111,0 chrVII 742269 . C T 614 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=11.16;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:647,72,0 chrVII 742270 . T C 581 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=10.56;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:614,72,0 chrVII 742276 . C T 611 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=11.11;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:644,72,0 chrVII 742290 . G A 474 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=9.48;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:57:507,57,0 chrVII 742513 . T C 2818 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0003;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.54;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2851,324,0 chrVII 742606 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=172;Dels=0.00;FS=6.148;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.321;QD=23.22;ReadPosRankSum=2.421;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3993,456,0 chrVII 742720 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=198;Dels=0.00;FS=7.926;HaplotypeScore=10.8825;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.282;QD=22.16;ReadPosRankSum=2.387;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:4388,498,0 chrVII 742762 . G A 5013.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.8415;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.65;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,207:212:99:5013,567,0 chrVII 742917 . T C 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=8.319;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.281;QD=20.77;ReadPosRankSum=2.367;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3718,432,0 chrVII 742966 . G C 4328.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=22.2039;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.04;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,211:216:99:4328,501,0 chrVII 743032 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4100,447,0 chrVII 743456 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.77;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4065,438,0 chrVII 743495 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.905;QD=22.96;ReadPosRankSum=1.710;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3559,402,0 chrVII 743539 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3150,366,0 chrVII 743755 . G A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3664,417,0 chrVII 743803 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=3.736;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.81;ReadPosRankSum=1.688;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3559,405,0 chrVII 743974 . A C 3479.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3479,408,0 chrVII 744013 . A C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=139;Dels=0.00;FS=11.562;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.566;QD=22.49;ReadPosRankSum=2.919;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:3,134:139:99:3159,363,0 chrVII 744064 . C T 3479.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.35;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3479,381,0 chrVII 744469 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.547;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.356;QD=22.37;ReadPosRankSum=1.652;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2919,333,0 chrVII 744682 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=160;Dels=0.00;FS=3.035;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.545;QD=22.82;ReadPosRankSum=2.419;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3651,417,0 chrVII 744730 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.632;DP=144;Dels=0.00;FS=18.199;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.753;QD=17.88;ReadPosRankSum=3.676;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:5,138:144:99:2608,300,0 chrVII 744731 . G A 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=141;Dels=0.00;FS=7.257;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-0.237;QD=18.52;ReadPosRankSum=2.327;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2644,294,0 chrVII 744859 . C A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4250,471,0 chrVII 744980 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=196;Dels=0.00;FS=2.949;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-0.838;QD=18.08;ReadPosRankSum=2.424;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:3544,405,0 chrVII 744985 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=208;Dels=0.00;FS=8.523;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.459;QD=16.86;ReadPosRankSum=3.342;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:4,203:208:99:3506,411,0 chrVII 745285 . T A 3156 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.77;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3189,354,0 chrVII 745446 . G A 2446 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.05;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2479,273,0 chrVII 745560 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=24.19;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2331,255,0 chrVII 745588 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.79;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1907,216,0 chrVII 745712 . G T 2204 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=18.07;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2237,255,0 chrVII 745730 . T G 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=110;Dels=0.00;FS=8.061;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;MQRankSum=0.513;QD=16.14;ReadPosRankSum=2.404;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:1808,210,0 chrVII 745746 . C G 1304 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=74.8618;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=0;QD=14.82;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1337,153,0 chrVII 745777 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=15.87;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1398,156,0 chrVII 745888 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=18.43;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2447,273,0 chrVII 745891 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.60;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2250,243,0 chrVII 745981 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.57;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2419,273,0 chrVII 745989 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=18.81;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2460,267,0 chrVII 746000 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.71;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2447,267,0 chrVII 746158 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=124;Dels=0.00;FS=5.753;HaplotypeScore=12.8717;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.877;QD=21.37;ReadPosRankSum=2.910;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2683,306,0 chrVII 746194 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.73;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2901,321,0 chrVII 746374 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.133;QD=22.78;ReadPosRankSum=1.673;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2721,312,0 chrVII 746541 . A C 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-0.243;QD=19.96;ReadPosRankSum=1.700;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2169,246,0 chrVII 746564 . T C 1588 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=16.04;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1621,186,0 chrVII 746615 . T C 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;MQRankSum=-1.423;QD=7.79;ReadPosRankSum=1.392;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:905,105,0 chrVII 746628 . C A 1182 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=10.19;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1215,135,0 chrVII 746824 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=22.88;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3867,447,0 chrVII 746836 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=3.170;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.876;QD=22.31;ReadPosRankSum=1.690;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3704,432,0 chrVII 747045 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.63;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2173,246,0 chrVII 747055 . A G 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.147;QD=19.19;ReadPosRankSum=1.695;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1837,213,0 chrVII 747090 . T G 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.385;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.652;QD=15.33;ReadPosRankSum=1.700;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1704,192,0 chrVII 747244 . G A 2549 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.96;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2582,291,0 chrVII 747304 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.097;QD=20.82;ReadPosRankSum=1.679;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2761,318,0 chrVII 747409 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=3.443;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.114;QD=22.44;ReadPosRankSum=1.707;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3107,357,0 chrVII 747545 . A G 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=141;Dels=0.00;FS=6.700;HaplotypeScore=13.5901;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.027;QD=20.02;ReadPosRankSum=2.344;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2856,330,0 chrVII 747860 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.90;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2735,315,0 chrVII 748014 . A G 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.495;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.803;QD=23.56;ReadPosRankSum=1.704;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2954,333,0 chrVII 748153 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3737,411,0 chrVII 748214 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2720,306,0 chrVII 748310 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.642;QD=21.38;ReadPosRankSum=1.596;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3293,378,0 chrVII 748532 . T C 2276 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.27;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2309,270,0 chrVII 749135 . G T 2746 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2779,306,0 chrVII 749414 . T C 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.813;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.022;QD=22.58;ReadPosRankSum=1.642;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1772,201,0 chrVII 749702 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.216;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.814;QD=21.27;ReadPosRankSum=1.709;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3267,384,0 chrVII 749720 . C T 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.042;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.109;QD=21.33;ReadPosRankSum=1.583;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3019,330,0 chrVII 749782 . T C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=3.343;HaplotypeScore=4.6247;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;MQRankSum=-0.360;QD=17.09;ReadPosRankSum=1.709;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2614,297,0 chrVII 749791 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.424;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;MQRankSum=-1.125;QD=17.41;ReadPosRankSum=1.710;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2732,321,0 chrVII 749804 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=160;Dels=0.00;FS=2.940;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;MQRankSum=-0.776;QD=16.65;ReadPosRankSum=2.342;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2697,318,0 chrVII 749818 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=17.13;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3013,333,0 chrVII 749837 . C A 2621 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=16.80;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2654,297,0 chrVII 749969 . A G 3137 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.57;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3170,360,0 chrVII 750123 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.32;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2229,249,0 chrVII 750272 . A T 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=3.351;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.686;QD=24.37;ReadPosRankSum=1.699;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2616,294,0 chrVII 750344 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.40;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2836,312,0 chrVII 750349 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.18;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2778,306,0 chrVII 750394 . C A 2383 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.06;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2416,273,0 chrVII 750612 . T A 4856.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.80;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4856,540,0 chrVII 750736 . G T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.14;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5455,594,0 chrVII 750891 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.23;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3260,363,0 chrVII 750918 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.34;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3247,372,0 chrVII 750949 . C G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.01;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3425,390,0 chrVII 751022 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.82;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3154,348,0 chrVII 751064 . G T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=95.3349;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=0.21;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:0,5:101:6:53,6,0 chrVII 751238 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.40;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2452,276,0 chrVII 751445 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=22.53;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3559,390,0 chrVII 751580 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=4.670;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.795;QD=18.89;ReadPosRankSum=1.284;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3245,351,0 chrVII 751583 . A C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=4.451;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-1.243;QD=18.24;ReadPosRankSum=1.691;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3171,363,0 chrVII 751595 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.56;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3433,378,0 chrVII 751660 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.222;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.687;QD=19.80;ReadPosRankSum=1.714;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3762,426,0 chrVII 751927 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.78;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2474,276,0 chrVII 752056 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.13;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2977,327,0 chrVII 752078 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.75;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2740,306,0 chrVII 752357 . A G 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=106;Dels=0.00;FS=3.310;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.468;QD=20.91;ReadPosRankSum=1.699;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2249,261,0 chrVII 752411 . T C 1914 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=20.36;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1947,222,0 chrVII 752423 . G T 1626 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=19.59;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1659,180,0 chrVII 752424 . G T 1655 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.70;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1688,183,0 chrVII 752477 . T G 1593 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.90;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1626,186,0 chrVII 752554 . T C 2623 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.29;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2656,306,0 chrVII 752597 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.06;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2327,255,0 chrVII 752843 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=15.48;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2030,240,0 chrVII 752846 . A T 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=134;Dels=0.00;FS=8.795;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.028;QD=15.80;ReadPosRankSum=2.248;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2150,237,0 chrVII 752948 . G A 4332.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.0838;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.66;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4332,477,0 chrVII 753087 . C T 7483.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=22.7036;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=23.68;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,313:316:99:7483,820,0 chrVII 753137 . C T 8526.01 filter AC=2;AF=1.00;AN=2;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=22.15;SB=-3.455e+03 GT:AD:DP:GQ:PL 1/1:0,384:385:99:8526,972,0 chrVII 753195 . G A 7792.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=14.5671;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.61;SB=-4.097e+03 GT:AD:DP:GQ:PL 1/1:0,329:330:99:7792,852,0 chrVII 754427 . G T 1668 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=18.53;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1701,195,0 chrVII 754453 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=17.35;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1612,177,0 chrVII 754555 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.76;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1839,207,0 chrVII 754643 . A G 952 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=16.14;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:985,111,0 chrVII 754648 . C G 921 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=15.10;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:954,108,0 chrVII 754670 . G C 939 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=14.45;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:972,111,0 chrVII 754678 . T C 759 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=11.00;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:90:792,90,0 chrVII 754688 . T C 703 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=10.98;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:87:736,87,0 chrVII 754717 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.84;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1182,135,0 chrVII 754860 . C G 2580 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.0883;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.04;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2613,303,0 chrVII 755127 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.91;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3276,360,0 chrVII 755345 . C G 2202 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.59;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:102:99:2235,252,0 chrVII 755549 . T A 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.619;QD=20.97;ReadPosRankSum=1.694;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1983,216,0 chrVII 756009 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.345;QD=22.51;ReadPosRankSum=1.713;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:4097,468,0 chrVII 756297 . C T 4750.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.99;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4750,537,0 chrVII 756484 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3311,375,0 chrVII 756717 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.8148;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.62;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3755,414,0 chrVII 756890 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.15;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2975,336,0 chrVII 756925 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.575;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.669;QD=22.37;ReadPosRankSum=1.711;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3668,420,0 chrVII 757012 . A G 3010 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.81;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3043,348,0 chrVII 757121 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2630,297,0 chrVII 757231 . A C 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=4.716;HaplotypeScore=14.7436;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.379;QD=23.09;ReadPosRankSum=1.710;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3649,423,0 chrVII 757351 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3359,387,0 chrVII 757441 . C A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.18;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3685,402,0 chrVII 757758 . C G 2570 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.16;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2603,294,0 chrVII 757809 . C A 2760 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.79;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2793,303,0 chrVII 758035 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.80;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2148,237,0 chrVII 758339 . G T 2408 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2441,276,0 chrVII 758483 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=2.692;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.579;QD=23.17;ReadPosRankSum=2.328;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2836,327,0 chrVII 758543 . C A 2360 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.91;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2393,264,0 chrVII 758589 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.05;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2751,303,0 chrVII 758636 . C T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3409,372,0 chrVII 759037 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0556;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2744,300,0 chrVII 759337 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.53;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3289,372,0 chrVII 759633 . G A 4829.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=21.9386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4829,528,0 chrVII 759759 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.10;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4273,474,0 chrVII 759779 . T C 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=3.029;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.006;QD=20.37;ReadPosRankSum=2.360;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:2,190:195:99:3972,462,0 chrVII 760098 . T A 4859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.127;QD=22.29;ReadPosRankSum=1.653;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4859,549,0 chrVII 760939 . C T 5965.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5965,672,0 chrVII 761877 . T C 5509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.208;QD=23.15;ReadPosRankSum=1.718;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5509,636,0 chrVII 761958 . C A 5601.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=9.0222;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.77;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5601,621,0 chrVII 761973 . A G 5387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.6575;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.410;QD=21.63;ReadPosRankSum=1.440;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5387,621,0 chrVII 762371 . T C 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.612;QD=21.93;ReadPosRankSum=1.697;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2226,255,0 chrVII 762496 . A C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=112;Dels=0.00;FS=8.507;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.297;QD=22.23;ReadPosRankSum=2.361;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2523,291,0 chrVII 762571 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.13;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2762,306,0 chrVII 763036 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.1701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5080,552,0 chrVII 763187 . A G 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=195;Dels=0.00;FS=3.027;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.341;QD=22.91;ReadPosRankSum=2.412;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4467,513,0 chrVII 763227 . A G 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=176;Dels=0.00;FS=9.262;HaplotypeScore=12.6619;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=2.187;QD=22.36;ReadPosRankSum=2.889;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:3,169:176:99:3935,450,0 chrVII 763413 . T C 2988 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.19;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3021,348,0 chrVII 763485 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.39;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1111,132,0 chrVII 763508 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.49;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1365,147,0 chrVII 763517 . A G 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.866;QD=19.62;ReadPosRankSum=1.681;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1367,153,0 chrVII 763747 . G T 2721 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=25.91;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2754,303,0 chrVII 763924 . G A 2371.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.196;DP=216;Dels=0.00;FS=93.637;HaplotypeScore=11.2614;MLEAC=1;MLEAF=0.500;MQ=41.82;MQ0=0;MQRankSum=3.354;QD=10.98;ReadPosRankSum=-0.017;SB=-8.770e+02 GT:AD:DP:GQ:PL 0/1:76,139:216:99:2401,0,1088 chrVII 764392 . G A 865.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;DP=319;Dels=0.00;FS=17.987;HaplotypeScore=24.1614;MLEAC=1;MLEAF=0.500;MQ=41.33;MQ0=46;MQRankSum=-2.816;QD=2.71;ReadPosRankSum=-0.688;SB=-2.730e+02 GT:AD:DP:GQ:PL 0/1:192,126:319:99:895,0,3821 chrVII 764419 . G A 2034.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.462;DP=376;Dels=0.00;FS=12.242;HaplotypeScore=24.0929;MLEAC=1;MLEAF=0.500;MQ=45.74;MQ0=35;MQRankSum=-2.711;QD=5.41;ReadPosRankSum=0.510;SB=-9.030e+02 GT:AD:DP:GQ:PL 0/1:203,170:376:99:2064,0,3798 chrVII 764533 . C T 1718.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.077;DP=414;Dels=0.00;FS=11.142;HaplotypeScore=26.3850;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=128;MQRankSum=-1.243;QD=4.15;ReadPosRankSum=0.022;SB=-6.960e+02 GT:AD:DP:GQ:PL 0/1:205,209:414:99:1748,0,1443 chrVII 764689 . A G 1283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.193;DP=368;Dels=0.00;FS=7.327;HaplotypeScore=11.8899;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=84;MQRankSum=-2.403;QD=3.49;ReadPosRankSum=-0.163;SB=-7.170e+02 GT:AD:DP:GQ:PL 0/1:179,189:368:99:1313,0,1557 chrVII 764713 . A G 1043.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.876;DP=321;Dels=0.00;FS=9.856;HaplotypeScore=26.1409;MLEAC=1;MLEAF=0.500;MQ=17.91;MQ0=133;MQRankSum=-0.331;QD=3.25;ReadPosRankSum=-0.583;SB=-4.560e+02 GT:AD:DP:GQ:PL 0/1:152,169:321:99:1073,0,900 chrVII 764998 . T A 4517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=248;Dels=0.00;FS=9.847;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.567;QD=18.21;ReadPosRankSum=2.939;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:3,245:248:99:4517,507,0 chrVII 765005 . T A 3385.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.023;DP=248;Dels=0.00;FS=144.240;HaplotypeScore=10.9321;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=3.206;QD=13.65;ReadPosRankSum=1.106;SB=-1.488e+03 GT:AD:DP:GQ:PL 0/1:52,196:248:99:3385,0,131 chrVII 765055 . G A 5517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=271;Dels=0.00;FS=45.811;HaplotypeScore=14.3654;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=5.614;QD=20.36;ReadPosRankSum=2.626;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:11,260:271:99:5517,609,0 chrVII 765127 . G A 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=205;Dels=0.00;FS=22.343;HaplotypeScore=16.6011;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=4.131;QD=21.94;ReadPosRankSum=-1.085;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:6,198:205:99:4497,470,0 chrVII 765217 . T C 6412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=303;Dels=0.00;FS=3.497;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.229;QD=21.16;ReadPosRankSum=1.686;SB=-3.400e+03 GT:AD:DP:GQ:PL 1/1:1,301:303:99:6412,729,0 chrVII 765286 . A C 5840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=283;Dels=0.00;FS=9.091;HaplotypeScore=17.4865;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.415;QD=20.64;ReadPosRankSum=3.393;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:4,276:283:99:5840,681,0 chrVII 765415 . A G 5961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=255;Dels=0.00;FS=5.802;HaplotypeScore=14.2643;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.524;QD=23.38;ReadPosRankSum=2.917;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:3,252:255:99:5961,678,0 chrVII 765750 . A G 931 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=61.17;MQ0=0;QD=20.24;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:964,111,0 chrVII 765802 . T C 799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.502;DP=51;Dels=0.00;FS=2.626;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=-0.701;QD=15.67;ReadPosRankSum=2.862;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:3,48:51:96:832,96,0 chrVII 766068 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=166;Dels=0.00;FS=7.378;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.173;QD=22.61;ReadPosRankSum=2.344;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,161:166:99:3753,423,0 chrVII 766102 . G T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.06;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3459,378,0 chrVII 766129 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.87;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3567,408,0 chrVII 766363 . T C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=4.505;HaplotypeScore=12.4435;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.658;QD=19.69;ReadPosRankSum=1.688;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3163,369,0 chrVII 766579 . T C 4012.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=24.17;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4012,456,0 chrVII 766797 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=18.19;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2179,246,0 chrVII 767046 . C A 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=148;Dels=0.00;FS=9.251;HaplotypeScore=8.9355;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.276;QD=17.95;ReadPosRankSum=2.048;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2690,306,0 chrVII 767047 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.737;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.323;QD=17.51;ReadPosRankSum=3.705;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:5,144:150:99:2660,303,0 chrVII 767183 . T C 4476.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.07;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4476,516,0 chrVII 767223 . G A 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.272;QD=23.22;ReadPosRankSum=-1.420;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4945,540,0 chrVII 767304 . T C 3176 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.1821;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=21.61;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3209,378,0 chrVII 767344 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.90;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3138,360,0 chrVII 767355 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.56;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2984,342,0 chrVII 767373 . T C 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=165;Dels=0.01;FS=8.874;HaplotypeScore=6.1226;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.053;QD=18.10;ReadPosRankSum=2.269;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3019,342,0 chrVII 767698 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=193;Dels=0.00;FS=5.637;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.328;QD=15.85;ReadPosRankSum=2.910;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:3,187:193:99:3092,357,0 chrVII 768079 . T C 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=88;Dels=0.00;FS=6.166;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.713;QD=23.68;ReadPosRankSum=2.851;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:3,85:88:99:2117,243,0 chrVII 768165 . G A 2714 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.20;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2747,306,0 chrVII 768214 . T C 2842 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.38;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2875,333,0 chrVII 768250 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.69;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3020,333,0 chrVII 768310 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.27;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3281,366,0 chrVII 768334 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.17;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3314,378,0 chrVII 768427 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.13;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3469,393,0 chrVII 768457 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.502;QD=22.73;ReadPosRankSum=1.682;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3170,378,0 chrVII 768496 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.894;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.530;QD=21.28;ReadPosRankSum=2.383;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3183,363,0 chrVII 768538 . T C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=4.191;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.357;QD=19.86;ReadPosRankSum=1.705;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2535,300,0 chrVII 768552 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.74;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2560,279,0 chrVII 768583 . T C 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.732;QD=21.22;ReadPosRankSum=1.700;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2325,264,0 chrVII 768616 . T A 2358 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.05;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2391,264,0 chrVII 768679 . T A 2599 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2632,291,0 chrVII 768739 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.61;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2814,315,0 chrVII 768793 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.45;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2613,288,0 chrVII 768844 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.11;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2089,237,0 chrVII 768961 . T C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.235;QD=21.00;ReadPosRankSum=1.703;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2511,288,0 chrVII 769024 . A T 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=80;Dels=0.00;FS=3.055;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.032;QD=19.39;ReadPosRankSum=2.388;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1584,174,0 chrVII 769183 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.17;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1940,219,0 chrVII 769207 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.95;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1730,189,0 chrVII 769305 . T A 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.109;QD=22.66;ReadPosRankSum=2.353;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2344,258,0 chrVII 769360 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=123;Dels=0.00;FS=5.678;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.306;QD=22.54;ReadPosRankSum=1.647;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2806,324,0 chrVII 769395 . T C 2976 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.25;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3009,342,0 chrVII 769496 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.22;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2262,243,0 chrVII 769730 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.22;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3529,393,0 chrVII 769748 . A C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.0291;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.86;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3628,414,0 chrVII 770041 . G A 4673.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.2304;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.59;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4673,525,0 chrVII 770354 . A G 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=196;Dels=0.00;FS=6.938;HaplotypeScore=11.4341;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.581;QD=21.51;ReadPosRankSum=2.361;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4216,486,0 chrVII 770589 . T C 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.256;QD=22.81;ReadPosRankSum=1.716;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4812,546,0 chrVII 770922 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0656;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.99;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4630,510,0 chrVII 771068 . G A 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.261;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.6726;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.295;QD=22.28;ReadPosRankSum=1.544;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3297,338,0 chrVII 771195 . C T 3952.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.9093;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3952,438,0 chrVII 771558 . A G 3172 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3205,372,0 chrVII 771837 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.61;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3278,384,0 chrVII 772074 . C T 4149.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.50;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4149,468,0 chrVII 772150 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=17.57;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2194,243,0 chrVII 772420 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=23.59;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2298,255,0 chrVII 772517 . C A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3502,384,0 chrVII 772705 . A G 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.107;QD=22.83;ReadPosRankSum=1.713;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4200,477,0 chrVII 772975 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=153;Dels=0.00;FS=5.733;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;MQRankSum=-1.762;QD=18.22;ReadPosRankSum=2.954;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:2820,324,0 chrVII 772978 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=19.23;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2975,330,0 chrVII 773002 . T C 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=170;Dels=0.00;FS=2.918;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=-0.527;QD=18.34;ReadPosRankSum=2.421;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3150,372,0 chrVII 773039 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.84;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:2994,354,0 chrVII 773040 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.165;QD=18.40;ReadPosRankSum=1.711;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3125,357,0 chrVII 773140 . A G 2229 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.169;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-0.212;QD=16.04;ReadPosRankSum=1.707;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2262,264,0 chrVII 773144 . A C 2291 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=16.85;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2324,261,0 chrVII 773146 . T C 2112 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=15.64;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2145,252,0 chrVII 773157 . T G 2223 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=15.77;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2256,258,0 chrVII 773198 . A G 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-0.351;QD=18.14;ReadPosRankSum=1.711;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3099,354,0 chrVII 773287 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.26;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3687,405,0 chrVII 773402 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=15.1795;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.370;QD=22.61;ReadPosRankSum=1.703;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2701,309,0 chrVII 773458 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=25.14;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3319,363,0 chrVII 773492 . T G 3057 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.52;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3090,354,0 chrVII 773593 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=22.18;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2695,294,0 chrVII 773594 . C G 2534 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=21.12;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2567,294,0 chrVII 773606 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=21.43;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2755,306,0 chrVII 773614 . T C 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.299;QD=19.99;ReadPosRankSum=1.703;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2432,282,0 chrVII 773709 . A G 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-1.085;QD=21.19;ReadPosRankSum=1.700;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2322,273,0 chrVII 773833 . A G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;MQRankSum=-0.985;QD=22.22;ReadPosRankSum=1.698;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2299,270,0 chrVII 773834 . A G 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=103;Dels=0.00;FS=3.002;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;MQRankSum=-2.230;QD=21.89;ReadPosRankSum=2.377;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,99:103:99:2288,264,0 chrVII 773858 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=23.31;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2084,231,0 chrVII 773895 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.47;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1622,183,0 chrVII 773955 . T C 1892 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=21.26;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1925,228,0 chrVII 773971 . A T 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;MQRankSum=-1.392;QD=18.04;ReadPosRankSum=1.698;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1873,213,0 chrVII 773998 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=15.31;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1411,159,0 chrVII 773999 . A G 1365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;MQRankSum=-1.615;QD=15.34;ReadPosRankSum=1.693;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1398,159,0 chrVII 774009 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=15.23;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1510,165,0 chrVII 774012 . C T 1354 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=15.04;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1387,150,0 chrVII 774023 . T A 1174 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=14.14;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1207,132,0 chrVII 774035 . T C 1062 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=12.49;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1095,123,0 chrVII 774039 . C T 972 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=11.30;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1005,114,0 chrVII 774082 . A T 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=0.303;QD=16.67;ReadPosRankSum=1.689;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1367,153,0 chrVII 774107 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.93;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1503,168,0 chrVII 774186 . T A 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=107;Dels=0.00;FS=5.250;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.878;QD=22.45;ReadPosRankSum=2.916;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2435,267,0 chrVII 774230 . T C 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=111;Dels=0.00;FS=2.894;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=-0.964;QD=21.71;ReadPosRankSum=2.405;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2443,282,0 chrVII 774283 . G T 2561 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=24.39;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2594,282,0 chrVII 774330 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.11;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3216,354,0 chrVII 774447 . A G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.105;QD=19.17;ReadPosRankSum=1.702;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2238,258,0 chrVII 774460 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=17.66;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2152,240,0 chrVII 774621 . C T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.3436;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.93;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4238,465,0 chrVII 774677 . G C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.04;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3618,411,0 chrVII 774717 . C T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.41;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3897,441,0 chrVII 774937 . T C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=148;Dels=0.00;FS=12.463;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-1.153;QD=19.80;ReadPosRankSum=3.210;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:2963,339,0 chrVII 774950 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.04;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2999,333,0 chrVII 775204 . A G 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.404;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.250;QD=24.12;ReadPosRankSum=1.712;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4173,474,0 chrVII 775301 . T C 4544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=196;Dels=0.00;FS=3.029;HaplotypeScore=8.8766;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.031;QD=23.18;ReadPosRankSum=2.374;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4544,510,0 chrVII 775603 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.9144;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.78;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3873,444,0 chrVII 776113 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.7666;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.05;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2896,327,0 chrVII 776173 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.79;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4338,480,0 chrVII 776483 . T C 6240.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=20.06;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:6240,705,0 chrVII 776488 . A G 5937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.437;QD=18.97;ReadPosRankSum=1.677;SB=-3.141e+03 GT:AD:DP:GQ:PL 1/1:1,312:313:99:5937,678,0 chrVII 776502 . G A 5439.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=7.1477;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.56;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:5439,597,0 chrVII 777397 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=163;Dels=0.00;FS=4.171;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.620;QD=20.46;ReadPosRankSum=1.689;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3335,378,0 chrVII 777630 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=114;Dels=0.00;FS=2.599;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=1.170;QD=14.15;ReadPosRankSum=2.884;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:3,110:114:99:1646,192,0 chrVII 777866 . A T 238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=22;Dels=0.00;FS=3.222;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=1.770;QD=10.82;ReadPosRankSum=1.999;SB=-1.609e+02 GT:AD:DP:GQ:PL 1/1:2,20:22:30:271,30,0 chrVII 777952 . G A 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.759;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.032;QD=25.40;ReadPosRankSum=1.070;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2294,231,0 chrVII 777959 . T G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=1.109;QD=23.93;ReadPosRankSum=1.654;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2163,249,0 chrVII 778064 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.94;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1369,153,0 chrVII 778073 . A G 1391 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.05;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1424,162,0 chrVII 778108 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=7.697;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.150;QD=19.58;ReadPosRankSum=2.410;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2441,285,0 chrVII 778136 . A T 2781 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.75;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2814,309,0 chrVII 778162 . T A 2535 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.30;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2568,285,0 chrVII 778255 . T A 2767 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=7.8428;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.65;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2800,303,0 chrVII 778265 . C A 2546 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.36;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2579,282,0 chrVII 778290 . T G 2400 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.43;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2433,273,0 chrVII 778465 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.66;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2943,318,0 chrVII 778509 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.346;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.444;QD=23.43;ReadPosRankSum=1.703;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2868,327,0 chrVII 778602 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=22.96;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1847,204,0 chrVII 778612 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=23.03;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1737,189,0 chrVII 778789 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=24.08;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1815,192,0 chrVII 778828 . A C 1433 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=23.88;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1466,165,0 chrVII 778839 . T C 1359 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;QD=23.84;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1392,156,0 chrVII 779053 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.30;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:51,6,0 chrVII 779059 . A T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.727;QD=6.44;ReadPosRankSum=0.727;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,3:4:6:57,6,0 chrVII 779118 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;QD=2.37;SB=-5.298e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:77,9,0 chrVII 779185 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=23.86;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1417,162,0 chrVII 779253 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=22.93;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1936,216,0 chrVII 779264 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=23.75;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1814,207,0 chrVII 779328 . T A 978 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=22.23;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1011,111,0 chrVII 779342 . C T 921 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=20.47;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:954,105,0 chrVII 779385 . T C 1105 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=21.25;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1138,132,0 chrVII 779506 . T C 697 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=21.78;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:84:730,84,0 chrVII 779532 . A G 62.51 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=1.79;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,34:35:12:95,12,0 chrVII 779554 . G A 450 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=13.64;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,30:33:54:483,54,0 chrVII 779581 . G T 885 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=22.12;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:918,102,0 chrVII 779595 . T C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=31.84;MQ0=0;MQRankSum=1.237;QD=21.92;ReadPosRankSum=2.310;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1195,138,0 chrVII 779721 . T C 2333 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1788;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=21.21;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2366,273,0 chrVII 779747 . T G 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;MQRankSum=-0.266;QD=19.89;ReadPosRankSum=1.699;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2121,243,0 chrVII 779766 . T G 1702 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;QD=19.12;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1735,192,0 chrVII 779781 . C T 1475 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=60.8900;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=18.67;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1508,165,0 chrVII 779803 . A G 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;MQRankSum=-1.683;QD=15.76;ReadPosRankSum=1.683;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1152,135,0 chrVII 779827 . A C 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.029;QD=16.68;ReadPosRankSum=2.375;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1134,129,0 chrVII 779835 . T C 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=63;Dels=0.00;FS=15.503;HaplotypeScore=54.3781;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.098;QD=16.38;ReadPosRankSum=2.372;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1065,120,0 chrVII 779859 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=17.58;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1246,138,0 chrVII 779893 . A G 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=105;Dels=0.00;FS=2.621;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;MQRankSum=0.394;QD=17.43;ReadPosRankSum=2.402;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:2,101:105:99:1863,216,0 chrVII 779914 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=18.46;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1990,222,0 chrVII 779916 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=18.88;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2034,225,0 chrVII 780019 . A G 862 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=14.61;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:895,105,0 chrVII 780023 . C T 927 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=15.45;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:960,105,0 chrVII 780035 . G A 738 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=12.72;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:84:771,84,0 chrVII 780056 . C T 792 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.03;FS=0.000;HaplotypeScore=61.3681;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=11.00;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:90:825,90,0 chrVII 780103 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=15.28;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1179,132,0 chrVII 780122 . T G 1360 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=17.44;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1393,159,0 chrVII 780153 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=58.9570;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=0.31;SB=-8.188e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:6:53,6,0 chrVII 780207 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.04;FS=0.000;HaplotypeScore=8.0415;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=19.56;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1539,171,0 chrVII 780279 . C G 1402 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=20.03;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1435,168,0 chrVII 780295 . T A 1486 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.08;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1519,171,0 chrVII 780373 . A G 2156 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.69;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2189,249,0 chrVII 780500 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.9885;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=24.07;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3876,441,0 chrVII 780617 . G C 5186.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.1312;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.52;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,235:241:99:5186,594,0 chrVII 780725 . T A 4617.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=217;Dels=0.00;FS=3.259;HaplotypeScore=6.7026;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.235;QD=21.28;ReadPosRankSum=1.716;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4617,507,0 chrVII 780728 . T C 4607.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=221;Dels=0.00;FS=6.446;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-0.028;QD=20.85;ReadPosRankSum=2.416;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:4607,519,0 chrVII 780734 . A G 4366.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=226;Dels=0.00;FS=6.070;HaplotypeScore=10.2411;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.371;QD=19.32;ReadPosRankSum=2.968;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:3,220:226:99:4366,501,0 chrVII 780980 . G A 6550.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=21.1001;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.48;SB=-3.492e+03 GT:AD:DP:GQ:PL 1/1:0,304:305:99:6550,717,0 chrVII 781040 . A T 7565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=12.1910;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.951;QD=22.45;ReadPosRankSum=1.670;SB=-4.046e+03 GT:AD:DP:GQ:PL 1/1:1,336:337:99:7565,840,0 chrVII 781136 . C T 6217.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=14.2328;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.99;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,310:311:99:6217,702,0 chrVII 781239 . G T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.2556;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.71;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4224,459,0 chrVII 781379 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2537,282,0 chrVII 782051 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.008;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.975;QD=21.58;ReadPosRankSum=1.098;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3452,366,0 chrVII 782072 . G C 3178 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.77;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3211,378,0 chrVII 782147 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3842,438,0 chrVII 782249 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.18;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4134,456,0 chrVII 782375 . A C 4158.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.1009;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.72;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4158,486,0 chrVII 782525 . C T 4966.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.1744;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.59;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4966,561,0 chrVII 782618 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4643,522,0 chrVII 782717 . T A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.58;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4946,561,0 chrVII 782807 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=193;Dels=0.00;FS=2.881;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.799;QD=22.51;ReadPosRankSum=2.398;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4344,489,0 chrVII 783224 . T C 5217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.685;QD=23.19;ReadPosRankSum=1.717;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5217,603,0 chrVII 783677 . C G 3598.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.2520;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.67;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3598,423,0 chrVII 783979 . T C 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=86;Dels=0.00;FS=10.728;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-0.110;QD=15.94;ReadPosRankSum=2.916;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:3,80:86:99:1404,165,0 chrVII 783986 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.2544;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=16.88;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1485,165,0 chrVII 784161 . T G 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.324;QD=15.20;ReadPosRankSum=1.704;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1903,225,0 chrVII 784184 . A G 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=4.346;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=0.306;QD=15.83;ReadPosRankSum=1.656;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2186,255,0 chrVII 784197 . A G 2344 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.24;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2377,273,0 chrVII 784337 . A G 5760.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.2654;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.90;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5760,654,0 chrVII 784372 . G T 5963.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.76;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5963,651,0 chrVII 784625 . A T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3423,378,0 chrVII 785199 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2356,267,0 chrVII 785318 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.83;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2740,294,0 chrVII 785828 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.10;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4805,522,0 chrVII 785851 . A G 3077 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.38;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3110,357,0 chrVII 785907 . C T 4751.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.84;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4751,525,0 chrVII 786618 . A G 5778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.650;QD=22.57;ReadPosRankSum=1.691;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5778,657,0 chrVII 786803 . C A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=21.05;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3579,387,0 chrVII 786810 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=19.52;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3175,348,0 chrVII 786942 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;MQRankSum=-0.467;QD=20.00;ReadPosRankSum=1.711;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3340,381,0 chrVII 786951 . T A 3126 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=19.78;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3159,354,0 chrVII 786968 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;QD=18.96;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2536,279,0 chrVII 786976 . C A 1997 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=17.22;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2030,225,0 chrVII 786983 . C T 1834 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=16.98;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1867,213,0 chrVII 787089 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.89;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1182,129,0 chrVII 787546 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.36;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3504,387,0 chrVII 787750 . G A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.28;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3448,375,0 chrVII 787904 . C A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.20;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3619,393,0 chrVII 788427 . A G 3128 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3161,372,0 chrVII 789189 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=3.452;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.190;QD=20.65;ReadPosRankSum=1.687;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3255,378,0 chrVII 789273 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=175;Dels=0.00;FS=5.503;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-1.526;QD=22.83;ReadPosRankSum=2.960;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3995,456,0 chrVII 789318 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.95;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3617,408,0 chrVII 789498 . C T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.01;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3740,411,0 chrVII 789513 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=19.87;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3637,405,0 chrVII 789553 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.89;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4049,444,0 chrVII 789609 . T C 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.6040;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.566;QD=22.26;ReadPosRankSum=1.679;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4386,501,0 chrVII 789681 . A C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=181;Dels=0.00;FS=5.739;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.106;QD=20.81;ReadPosRankSum=2.883;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:3767,441,0 chrVII 789735 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.61;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4041,459,0 chrVII 790307 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.7707;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.25;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3293,363,0 chrVII 790438 . T A,C 75.02 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.680;HaplotypeScore=128.5766;MLEAC=1,1;MLEAF=0.500,0.500;MQ=51.76;MQ0=0;MQRankSum=0.036;QD=0.52;ReadPosRankSum=1.613;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/2:1,138,6:145:54:135,63,54,72,0,63 chrVII 790683 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.0483;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.71;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4104,450,0 chrVII 790861 . C T 5859.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.1258;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.51;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5859,639,0 chrVII 790909 . T C 4741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.4620;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.269;QD=21.85;ReadPosRankSum=1.700;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4741,543,0 chrVII 790950 . A C 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=186;Dels=0.00;FS=9.318;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.440;QD=20.95;ReadPosRankSum=2.853;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:3896,444,0 chrVII 791316 . T A 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=154;Dels=0.00;FS=6.163;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.088;QD=23.23;ReadPosRankSum=2.354;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3578,387,0 chrVII 791799 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.99;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4583,501,0 chrVII 791887 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.95;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3008,327,0 chrVII 791920 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.61;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3501,396,0 chrVII 792001 . T G 2913 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.16;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2946,339,0 chrVII 792094 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.21;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2696,294,0 chrVII 792224 . G C 2007 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2040,234,0 chrVII 792484 . A T 2980 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.46;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3013,330,0 chrVII 792731 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.67;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3252,366,0 chrVII 792927 . T C 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=15.2330;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-1.142;QD=22.36;ReadPosRankSum=1.706;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:3119,354,0 chrVII 792997 . A C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=163;Dels=0.00;FS=4.260;HaplotypeScore=19.0675;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.624;QD=22.96;ReadPosRankSum=0.433;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3743,432,0 chrVII 793031 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.9748;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.43;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3543,387,0 chrVII 793207 . C A 4438.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.88;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4438,504,0 chrVII 793300 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.2311;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.03;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3722,408,0 chrVII 793301 . A T 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=180;Dels=0.00;FS=2.914;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.058;QD=20.65;ReadPosRankSum=2.422;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3717,405,0 chrVII 793570 . A C 2050 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=12.97;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2083,246,0 chrVII 793585 . G C 2270 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=12.97;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:2303,261,0 chrVII 793612 . A C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=1.568;QD=15.20;ReadPosRankSum=1.712;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2602,297,0 chrVII 793691 . G T 3179 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.34;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3212,369,0 chrVII 793703 . A G 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=0.221;QD=21.08;ReadPosRankSum=1.686;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3195,369,0 chrVII 793952 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.13;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3497,393,0 chrVII 794027 . C T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.7043;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.80;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3836,426,0 chrVII 794041 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.50;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3698,423,0 chrVII 794231 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=139;Dels=0.00;FS=2.573;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=-1.123;QD=22.23;ReadPosRankSum=2.848;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3123,354,0 chrVII 794286 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.07;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1634,195,0 chrVII 794323 . C A 1467 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=11.9653;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.29;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1500,165,0 chrVII 794497 . A G 226 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=12.5646;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=13.29;SB=-1.289e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:259,30,0 chrVII 794620 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=21.45;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1449,165,0 chrVII 794643 . A G 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=57;Dels=0.00;FS=6.612;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=0.598;QD=20.33;ReadPosRankSum=1.669;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:1,54:57:99:1192,138,0 chrVII 794878 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=1.325;QD=21.77;ReadPosRankSum=2.390;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3614,417,0 chrVII 794890 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=0.701;QD=20.58;ReadPosRankSum=-0.895;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3684,408,0 chrVII 794912 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.59;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3703,414,0 chrVII 794971 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=184;Dels=0.00;FS=3.032;HaplotypeScore=14.1506;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.542;QD=19.47;ReadPosRankSum=2.423;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3583,423,0 chrVII 795142 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.54;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3769,411,0 chrVII 795163 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.65;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3380,396,0 chrVII 795193 . G A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.93;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3663,405,0 chrVII 795253 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.49;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3168,360,0 chrVII 795256 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.18;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3044,345,0 chrVII 795499 . T A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.44;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3455,381,0 chrVII 795505 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.25;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3471,393,0 chrVII 795589 . T C 2872 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=17.0189;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.62;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:2905,333,0 chrVII 795876 . T G 3286.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.64;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3286,375,0 chrVII 795956 . T C 4853.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.36;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4853,543,0 chrVII 796125 . A T 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.030;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.658;QD=23.47;ReadPosRankSum=1.678;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3061,336,0 chrVII 796217 . T G 3177 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.86;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3210,357,0 chrVII 796263 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=3.010;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.689;QD=21.52;ReadPosRankSum=1.710;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3464,408,0 chrVII 796304 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4143,471,0 chrVII 796396 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.35;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3117,342,0 chrVII 796413 . G T 2848 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.43;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2881,318,0 chrVII 796586 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.38;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2839,312,0 chrVII 796791 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.95;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2644,288,0 chrVII 796856 . T C 2912 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.73;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2945,336,0 chrVII 796858 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.73;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2945,336,0 chrVII 797044 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.595;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.975;QD=22.94;ReadPosRankSum=1.645;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2763,321,0 chrVII 797085 . A G 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=108;Dels=0.00;FS=2.997;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.422;QD=22.44;ReadPosRankSum=2.404;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2457,279,0 chrVII 797366 . A T 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=134;Dels=0.00;FS=7.167;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.303;QD=22.69;ReadPosRankSum=2.358;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3073,333,0 chrVII 797622 . C T 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.962;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.432;QD=21.80;ReadPosRankSum=-0.477;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2801,312,0 chrVII 797674 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.15;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2649,297,0 chrVII 797989 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.364;QD=25.30;ReadPosRankSum=1.511;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3567,378,0 chrVII 798046 . T C 4928.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.4402;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.69;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4928,567,0 chrVII 798196 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.0354;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.92;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3989,462,0 chrVII 798257 . G T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3823,420,0 chrVII 798380 . A T 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.604;QD=20.50;ReadPosRankSum=1.678;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2677,288,0 chrVII 798397 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=19.23;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2668,291,0 chrVII 798400 . A T 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=144;Dels=0.00;FS=3.020;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-0.128;QD=16.91;ReadPosRankSum=2.415;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2468,279,0 chrVII 798821 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.99;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3023,336,0 chrVII 798848 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8077;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.01;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2680,312,0 chrVII 799244 . T C 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=187;Dels=0.00;FS=7.204;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.046;QD=21.62;ReadPosRankSum=2.410;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4042,459,0 chrVII 799262 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.1763;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.65;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4259,471,0 chrVII 799613 . G A 5950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=14.5199;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.529;QD=21.72;ReadPosRankSum=-0.730;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:5950,657,0 chrVII 799862 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.34;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3664,399,0 chrVII 799895 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.14;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3356,372,0 chrVII 799934 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.254;QD=22.36;ReadPosRankSum=1.684;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3230,369,0 chrVII 799970 . T C 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=2.699;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.476;QD=21.57;ReadPosRankSum=2.360;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3010,342,0 chrVII 800148 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=155;Dels=0.00;FS=12.067;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.799;QD=20.42;ReadPosRankSum=2.838;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3198,366,0 chrVII 800171 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.77;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3767,417,0 chrVII 800442 . T G 1443 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.74;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1476,171,0 chrVII 801373 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.59;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4506,492,0 chrVII 801844 . T C 2859 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8567;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.82;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2892,327,0 chrVII 801970 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.10;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2787,315,0 chrVII 802249 . C T 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=3.203;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.587;QD=19.78;ReadPosRankSum=-0.467;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2308,255,0 chrVII 802512 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.38;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2535,276,0 chrVII 802550 . A G 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=3.358;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.438;QD=21.91;ReadPosRankSum=1.694;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2049,240,0 chrVII 802904 . G T 2377 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2410,270,0 chrVII 803156 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3359,369,0 chrVII 803291 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=3.090;HaplotypeScore=5.9395;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.522;QD=19.23;ReadPosRankSum=1.690;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3206,375,0 chrVII 803311 . A G 3110 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.51;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3143,357,0 chrVII 803587 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.60;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3965,435,0 chrVII 803633 . A T 2698 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2731,309,0 chrVII 803671 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.739;QD=21.41;ReadPosRankSum=1.710;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3404,387,0 chrVII 803780 . A G 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=116;Dels=0.00;FS=3.016;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.029;QD=22.12;ReadPosRankSum=2.322;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2599,300,0 chrVII 803951 . C T 2619 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2652,291,0 chrVII 803987 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3184,348,0 chrVII 804084 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.425;QD=21.66;ReadPosRankSum=1.676;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2719,312,0 chrVII 804378 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3385,378,0 chrVII 804429 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3423,369,0 chrVII 804602 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.350;QD=22.14;ReadPosRankSum=1.660;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3266,381,0 chrVII 804686 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3766,414,0 chrVII 804722 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.56;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3678,405,0 chrVII 804812 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.23;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3690,429,0 chrVII 804816 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.43;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3600,411,0 chrVII 804950 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.34;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2311,255,0 chrVII 805132 . A C 1705 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.06;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1738,201,0 chrVII 805147 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.29;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1634,186,0 chrVII 805562 . C T 5280.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.8142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5280,585,0 chrVII 805722 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.297;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=22.3137;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.386;QD=21.08;ReadPosRankSum=0.564;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3752,401,0 chrVII 806818 . C T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.8199;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.71;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4838,531,0 chrVII 806907 . A G 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.830;QD=22.64;ReadPosRankSum=1.716;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4891,558,0 chrVII 807534 . A G 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.744;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=4.7501;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=-1.666;QD=5.92;ReadPosRankSum=1.666;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:1590,186,0 chrVII 807540 . A G 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.3324;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;MQRankSum=-1.087;QD=6.78;ReadPosRankSum=2.431;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,261:263:99:1817,207,0 chrVII 807552 . A G 920.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.912;DP=265;Dels=0.00;FS=30.723;HaplotypeScore=8.1236;MLEAC=1;MLEAF=0.500;MQ=38.52;MQ0=0;MQRankSum=-5.382;QD=3.47;ReadPosRankSum=-8.255;SB=-1.011e+03 GT:AD:DP:GQ:PL 0/1:149,116:265:99:950,0,836 chrVII 807564 . A T 864.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;DP=268;Dels=0.00;FS=38.687;HaplotypeScore=7.8756;MLEAC=1;MLEAF=0.500;MQ=40.55;MQ0=0;MQRankSum=-5.750;QD=3.22;ReadPosRankSum=-11.050;SB=-7.630e+02 GT:AD:DP:GQ:PL 0/1:177,91:268:99:894,0,1417 chrVII 807570 . A T 818.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DP=261;Dels=0.00;FS=13.284;HaplotypeScore=9.5076;MLEAC=1;MLEAF=0.500;MQ=41.81;MQ0=0;MQRankSum=-7.414;QD=3.13;ReadPosRankSum=-12.600;SB=-5.270e+02 GT:AD:DP:GQ:PL 0/1:186,75:261:99:848,0,1659 chrVII 807662 . T A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=21.80;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3728,420,0 chrVII 807765 . G T 1656 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=18.20;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1689,189,0 chrVII 807775 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.69;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1707,186,0 chrVII 807791 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.14;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1890,207,0 chrVII 807996 . A G 2384 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.49;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2417,285,0 chrVII 808052 . T A 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7178;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.682;QD=24.42;ReadPosRankSum=1.710;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3785,417,0 chrVII 808108 . A G 5279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=4.897;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.452;QD=24.78;ReadPosRankSum=1.633;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,209:213:99:5279,594,0 chrVII 808263 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.63;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2715,309,0 chrVII 808336 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.81;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1875,228,0 chrVII 808521 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.98;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1112,126,0 chrVII 808578 . G T 1874 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.42;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1907,210,0 chrVII 808820 . G A 5821.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=26.7782;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.17;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:5821,642,0 chrVII 808863 . A G 6372.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=9.5896;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.42;SB=-3.697e+03 GT:AD:DP:GQ:PL 1/1:0,310:312:99:6372,746,0 chrVII 808872 . A G 6654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=312;Dels=0.00;FS=3.067;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.196;QD=21.33;ReadPosRankSum=1.687;SB=-3.737e+03 GT:AD:DP:GQ:PL 1/1:2,309:312:99:6654,762,0 chrVII 809012 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.5358;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.75;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4585,504,0 chrVII 809098 . C T 3864.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.1179;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.35;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3864,423,0 chrVII 809329 . A G 2902 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2935,336,0 chrVII 810159 . T G 7108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=325;Dels=0.00;FS=3.272;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.059;QD=21.87;ReadPosRankSum=1.679;SB=-3.988e+03 GT:AD:DP:GQ:PL 1/1:1,324:325:99:7108,810,0 chrVII 810169 . C T 7228.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=5.1517;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.64;SB=-4.220e+03 GT:AD:DP:GQ:PL 1/1:0,334:334:99:7228,816,0 chrVII 810199 . C G 6420.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.47;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:0,293:299:99:6420,726,0 chrVII 810364 . C A 5284.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.8768;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.87;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5284,600,0 chrVII 810415 . G A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.81;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4367,477,0 chrVII 810496 . A G 5321.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.55;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5321,597,0 chrVII 810523 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=203;Dels=0.00;FS=3.811;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.652;QD=20.78;ReadPosRankSum=1.715;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4219,489,0 chrVII 810535 . T C 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.748;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=1.263;QD=21.37;ReadPosRankSum=1.714;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4145,468,0 chrVII 810615 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.27;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2444,285,0 chrVII 810985 . A T 2829 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=20.80;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2862,312,0 chrVII 810986 . A G 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=6.519;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=-2.268;QD=19.46;ReadPosRankSum=2.413;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2680,309,0 chrVII 811029 . T C 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=124;Dels=0.00;FS=3.045;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.474;QD=18.83;ReadPosRankSum=2.369;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2368,270,0 chrVII 811119 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=21.27;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2905,327,0 chrVII 811126 . T C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=2.960;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=0.911;QD=20.82;ReadPosRankSum=2.344;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2927,330,0 chrVII 811131 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=20.48;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2961,333,0 chrVII 811176 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=17.74;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2587,291,0 chrVII 811192 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=18.56;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2372,264,0 chrVII 811202 . G T 2179 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=18.16;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2212,252,0 chrVII 811228 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=19.56;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2087,237,0 chrVII 811276 . T C 1718 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=75.6679;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=19.98;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1751,207,0 chrVII 811300 . A G 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-1.531;QD=19.94;ReadPosRankSum=1.652;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1748,201,0 chrVII 811324 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.82;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1532,174,0 chrVII 811383 . C T 1035 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=16.43;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1068,117,0 chrVII 811431 . A T 386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.918;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=-1.204;QD=13.79;ReadPosRankSum=2.275;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:2,26:28:48:419,48,0 chrVII 823350 . C G 71.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=10.22;SB=-2.555e+01 GT:AD:DP:GQ:PL 1/1:0,6:7:12:104,12,0 chrVII 823361 . T G 205.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=20.50;SB=-2.599e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:238,27,0 chrVII 823436 . C A 200.01 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=22.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:27:233,27,0 chrVII 823443 . C G 123.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=20.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:156,18,0 chrVII 823456 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrVII 823476 . A T 198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.574;DP=68;Dels=0.00;FS=49.177;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;MQRankSum=2.749;QD=2.91;ReadPosRankSum=2.702;SB=-7.002e+01 GT:AD:DP:GQ:PL 1/1:5,63:68:27:231,27,0 chrVII 823607 . G A 1672 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=22.29;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1705,186,0 chrVII 823611 . T G 1562 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=20.55;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1595,183,0 chrVII 823615 . T C 1679 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;MQRankSum=-0.449;QD=20.73;ReadPosRankSum=1.604;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1712,198,0 chrVII 823674 . A G 1739 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=18.50;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1772,204,0 chrVII 823786 . T A 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.253;DP=124;Dels=0.01;FS=3.191;HaplotypeScore=101.8123;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.915;QD=17.86;ReadPosRankSum=0.577;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2248,252,0 chrVII 823967 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.4407;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.53;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3624,402,0 chrVII 824079 . C A 5333.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.60;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5333,588,0 chrVII 824168 . C A 5148.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.09;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5148,561,0 chrVII 824337 . G A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.37;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4272,483,0 chrVII 824772 . A G 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=138;Dels=0.00;FS=6.647;HaplotypeScore=11.6588;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.153;QD=21.62;ReadPosRankSum=2.414;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3017,354,0 chrVII 824811 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1544;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.74;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3149,345,0 chrVII 824872 . G T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.24;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3440,381,0 chrVII 825064 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.29;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3774,414,0 chrVII 825066 . G T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.20;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3859,420,0 chrVII 825417 . C G 3932.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=8.9693;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.14;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3932,450,0 chrVII 825444 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8014;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.89;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4071,459,0 chrVII 825852 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.04;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3482,393,0 chrVII 826536 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=203;Dels=0.00;FS=5.676;HaplotypeScore=18.1678;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.673;QD=21.93;ReadPosRankSum=2.935;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:3,197:203:99:4452,516,0 chrVII 826641 . T G 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=219;Dels=0.00;FS=7.212;HaplotypeScore=16.4451;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.360;QD=20.37;ReadPosRankSum=2.404;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,213:219:99:4462,519,0 chrVII 826948 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.26;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2994,339,0 chrVII 827004 . A G 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=104;Dels=0.00;FS=2.603;HaplotypeScore=7.0276;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.769;QD=21.11;ReadPosRankSum=2.284;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2228,258,0 chrVII 827128 . T C 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.427;QD=22.16;ReadPosRankSum=1.687;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1739,198,0 chrVII 827208 . A C 1642 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.6018;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.85;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1675,192,0 chrVII 827366 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.95;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3776,420,0 chrVII 827477 . A C 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.540;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.505;QD=23.74;ReadPosRankSum=1.704;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2929,336,0 chrVII 827501 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.40;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2322,261,0 chrVII 827509 . G C 2391 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2206;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.44;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2424,276,0 chrVII 827566 . T A 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.086;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.513;QD=18.96;ReadPosRankSum=0.962;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3124,327,0 chrVII 827791 . C T 3181 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.40;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3214,360,0 chrVII 827878 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=196;Dels=0.00;FS=2.720;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.707;QD=22.87;ReadPosRankSum=2.336;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4482,525,0 chrVII 828517 . A G 4587.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.64;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4587,522,0 chrVII 828811 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.569;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.284;QD=21.84;ReadPosRankSum=1.672;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2588,291,0 chrVII 828825 . T C 2380 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.45;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2413,273,0 chrVII 828836 . C G 2273 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.07;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2306,267,0 chrVII 828863 . C A 2474 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.49;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2507,276,0 chrVII 829194 . T G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.272;QD=22.65;ReadPosRankSum=1.705;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2932,348,0 chrVII 829589 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.58;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3669,408,0 chrVII 829617 . G A 3064 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.04;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3097,345,0 chrVII 829683 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.281;QD=23.10;ReadPosRankSum=1.708;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3373,387,0 chrVII 829847 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.58;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3410,372,0 chrVII 829895 . T C 3164 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.60;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3197,369,0 chrVII 829946 . G C 2917 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.84;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,135:140:99:2950,348,0 chrVII 829998 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.60;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3305,378,0 chrVII 830281 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.91;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2103,240,0 chrVII 830676 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.33;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2848,315,0 chrVII 830690 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.08;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2542,291,0 chrVII 830766 . A C 2467 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.8933;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=20.22;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2500,282,0 chrVII 830771 . G A 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.729;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=0.323;QD=21.33;ReadPosRankSum=-1.673;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2571,282,0 chrVII 830787 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.07;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2772,306,0 chrVII 830921 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=4.102;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.642;QD=23.41;ReadPosRankSum=1.636;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2561,285,0 chrVII 830992 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.72;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2760,309,0 chrVII 831013 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.87;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3189,360,0 chrVII 831041 . A G 3074 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.96;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3107,354,0 chrVII 831108 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.60;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2646,291,0 chrVII 831130 . C A 2538 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.98;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2571,285,0 chrVII 831291 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.19;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3943,447,0 chrVII 831330 . C T 5048.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.5358;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.70;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5048,561,0 chrVII 831407 . C T 4948.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.6075;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.23;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4948,540,0 chrVII 832073 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.74;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2688,297,0 chrVII 832077 . T C 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.216;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.735;QD=20.26;ReadPosRankSum=1.680;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2707,306,0 chrVII 832207 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.25;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2894,318,0 chrVII 832415 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=25.54;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3755,408,0 chrVII 832717 . T C 5391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=232;Dels=0.00;FS=8.687;HaplotypeScore=14.2505;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.381;QD=23.24;ReadPosRankSum=3.294;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:4,227:231:99:5391,606,0 chrVII 832872 . C T 4913.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.4927;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.28;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4913,546,0 chrVII 833104 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3418,366,0 chrVII 833158 . A C 2555 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.41;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2588,291,0 chrVII 833212 . C T 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=2.566;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.371;QD=19.10;ReadPosRankSum=1.996;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2516,273,0 chrVII 833214 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.01;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2447,282,0 chrVII 833517 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.47;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2373,267,0 chrVII 833529 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.85;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2493,270,0 chrVII 833796 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.32;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3307,360,0 chrVII 834010 . T A 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=109;Dels=0.00;FS=10.035;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.454;QD=20.66;ReadPosRankSum=2.862;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2285,261,0 chrVII 834267 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.78;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2357,267,0 chrVII 835147 . T C 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=230;Dels=0.00;FS=9.114;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-1.327;QD=21.39;ReadPosRankSum=3.422;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:4,224:230:99:4919,558,0 chrVII 835169 . T C 4886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.216;DP=243;Dels=0.00;FS=9.095;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.270;QD=20.11;ReadPosRankSum=3.396;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:4,239:243:99:4886,552,0 chrVII 835894 . T G 3310.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.82;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3310,375,0 chrVII 836056 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.68;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4168,456,0 chrVII 836201 . T G 4284.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.34;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4284,489,0 chrVII 836443 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.97;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3494,396,0 chrVII 836908 . A C 2019 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=60.86;MQ0=0;QD=21.25;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2052,234,0 chrVII 837183 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.8769;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.98;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3631,396,0 chrVII 837417 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.988;QD=22.45;ReadPosRankSum=1.639;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3368,381,0 chrVII 837489 . G C 3347.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=1;QD=19.69;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3347,378,0 chrVII 837577 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.260;QD=19.24;ReadPosRankSum=1.620;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3053,348,0 chrVII 837741 . A G 2630 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.08;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2663,312,0 chrVII 837778 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.7020;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=1;QD=20.58;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3293,360,0 chrVII 837897 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=171;Dels=0.00;FS=10.074;HaplotypeScore=7.0680;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.219;QD=19.68;ReadPosRankSum=2.852;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3366,375,0 chrVII 837909 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.46;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3205,363,0 chrVII 838145 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.51;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4172,468,0 chrVII 838330 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=177;Dels=0.00;FS=6.095;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.119;QD=22.47;ReadPosRankSum=2.949;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3978,453,0 chrVII 838381 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.67;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4391,489,0 chrVII 838490 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=164;Dels=0.00;FS=12.306;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.056;QD=20.57;ReadPosRankSum=2.945;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3373,384,0 chrVII 838500 . A C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8998;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.74;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3422,402,0 chrVII 838743 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.93;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3446,378,0 chrVII 838842 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=2.780;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.661;QD=22.41;ReadPosRankSum=2.411;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4326,510,0 chrVII 839088 . G A 4857.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.59;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4857,531,0 chrVII 839538 . T A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.44;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3478,393,0 chrVII 839652 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4218;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.87;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2114,237,0 chrVII 839712 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.85;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2981,330,0 chrVII 839880 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.590;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.455;QD=21.38;ReadPosRankSum=1.710;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3421,390,0 chrVII 839892 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=160;Dels=0.00;FS=7.287;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.131;QD=19.80;ReadPosRankSum=2.202;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3201,366,0 chrVII 839900 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.846;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.931;QD=20.31;ReadPosRankSum=1.689;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3270,375,0 chrVII 840315 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.757;DP=174;Dels=0.00;FS=3.429;HaplotypeScore=10.7682;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.692;QD=22.48;ReadPosRankSum=1.234;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3911,414,0 chrVII 840622 . A G 1085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.542;DP=87;Dels=0.00;FS=2.573;HaplotypeScore=11.8195;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.577;QD=12.47;ReadPosRankSum=2.918;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:3,83:87:99:1118,132,0 chrVII 840681 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.83;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2522,285,0 chrVII 840852 . T G 2501 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.28;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2534,291,0 chrVII 841068 . T G 2495 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2528,288,0 chrVII 841693 . A G 6599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=295;Dels=0.00;FS=2.945;HaplotypeScore=13.9521;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.346;QD=22.37;ReadPosRankSum=2.433;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:2,292:295:99:6599,744,0 chrVII 842006 . G T 3166 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9185;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.45;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3199,357,0 chrVII 842206 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=160;Dels=0.00;FS=6.078;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.070;QD=23.54;ReadPosRankSum=2.956;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3767,423,0 chrVII 842234 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=3.062;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.742;QD=21.78;ReadPosRankSum=1.629;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3680,426,0 chrVII 842514 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=223;Dels=0.00;FS=11.312;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-2.064;QD=19.57;ReadPosRankSum=2.372;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4365,495,0 chrVII 842565 . C T 4035.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.4752;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.59;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4035,453,0 chrVII 842585 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=181;Dels=0.00;FS=7.875;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.116;QD=19.21;ReadPosRankSum=2.340;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3477,393,0 chrVII 842605 . A C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.591;QD=18.78;ReadPosRankSum=1.670;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3206,357,0 chrVII 842630 . A C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.721;QD=19.24;ReadPosRankSum=1.711;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3130,351,0 chrVII 842834 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.33;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3966,432,0 chrVII 842947 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=3.669;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.168;QD=22.94;ReadPosRankSum=1.681;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3176,357,0 chrVII 843103 . C A 2870 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.10;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2903,327,0 chrVII 843110 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.63;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3020,330,0 chrVII 843390 . G C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.51;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3856,438,0 chrVII 843717 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=165;Dels=0.00;FS=3.617;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.022;QD=22.51;ReadPosRankSum=1.603;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,160:165:99:3714,429,0 chrVII 843816 . A G 5443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=234;Dels=0.00;FS=5.544;HaplotypeScore=14.0044;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.952;QD=23.26;ReadPosRankSum=2.944;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5443,606,0 chrVII 843838 . T C 5166.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.17;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5166,591,0 chrVII 844261 . A C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.49;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3464,396,0 chrVII 844451 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=159;Dels=0.00;FS=2.852;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-1.615;QD=19.30;ReadPosRankSum=2.419;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3101,354,0 chrVII 844453 . A T 3004 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.01;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3037,345,0 chrVII 844501 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=157;Dels=0.00;FS=5.245;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.174;QD=16.77;ReadPosRankSum=3.358;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:4,152:157:99:2666,309,0 chrVII 844511 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.18;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2996,330,0 chrVII 844703 . G A 5345.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.1086;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.44;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5345,594,0 chrVII 844977 . T C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=129;Dels=0.00;FS=9.341;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.279;QD=19.21;ReadPosRankSum=2.392;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2511,282,0 chrVII 844986 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.01;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2554,291,0 chrVII 845098 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.56;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2955,324,0 chrVII 845298 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=95.5932;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=26.15;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2936,318,0 chrVII 845555 . A C 906 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=1;QD=15.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,56:57:99:939,108,0 chrVII 845584 . T G 825 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=1;QD=12.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,64:65:93:858,93,0 chrVII 845600 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=12.30;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:906,105,0 chrVII 845605 . A G 615 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=9.61;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:75:648,75,0 chrVII 845612 . C T 483 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=8.94;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:60:516,60,0 chrVII 845614 . C A 481 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=8.91;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:60:514,60,0 chrVII 845775 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=111;Dels=0.00;FS=7.074;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.436;QD=21.97;ReadPosRankSum=2.204;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2472,285,0 chrVII 845801 . T C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.045;QD=23.31;ReadPosRankSum=1.672;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2737,315,0 chrVII 845918 . A C 2365 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.23;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2398,267,0 chrVII 846304 . T C 2846 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2879,327,0 chrVII 846377 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.10;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2807,318,0 chrVII 846464 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=22.82;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2840,312,0 chrVII 846529 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=24.64;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2817,312,0 chrVII 846601 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=22.49;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1405,162,0 chrVII 846611 . T G 1090 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=20.19;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1123,132,0 chrVII 846613 . A C 1090 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=20.57;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1123,129,0 chrVII 846634 . A G 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;MQRankSum=0.192;QD=19.37;ReadPosRankSum=1.668;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1079,123,0 chrVII 846696 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=17.25;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1223,138,0 chrVII 846715 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=0;QD=18.80;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1368,156,0 chrVII 846724 . A G 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=0;MQRankSum=-0.345;QD=17.78;ReadPosRankSum=2.305;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1242,144,0 chrVII 846740 . A T 980 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=19.22;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1013,117,0 chrVII 846741 . A G 935 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=18.33;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:968,114,0 chrVII 846746 . C T 845 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=17.24;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:878,99,0 chrVII 846750 . G A 768 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=17.45;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:93:801,93,0 chrVII 846917 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=16.41;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1625,180,0 chrVII 846920 . T C 1558 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=16.23;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1591,183,0 chrVII 846930 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=15.98;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1439,165,0 chrVII 846945 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=15.39;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1203,135,0 chrVII 846990 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.85;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1720,195,0 chrVII 847143 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.23;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3423,387,0 chrVII 847197 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.0574;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.53;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4541,510,0 chrVII 847338 . T A 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.0358;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.644;QD=22.48;ReadPosRankSum=1.717;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5283,585,0 chrVII 847392 . A G 5945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=275;Dels=0.00;FS=16.385;HaplotypeScore=13.2180;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.579;QD=21.62;ReadPosRankSum=3.398;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:4,271:275:99:5945,695,0 chrVII 847512 . A G 5849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=291;Dels=0.00;FS=2.985;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.478;QD=20.10;ReadPosRankSum=2.390;SB=-3.245e+03 GT:AD:DP:GQ:PL 1/1:2,288:291:99:5849,686,0 chrVII 847727 . C A 6369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=18.8463;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.719;QD=23.33;ReadPosRankSum=1.719;SB=-3.481e+03 GT:AD:DP:GQ:PL 1/1:1,272:273:99:6369,702,0 chrVII 847980 . A G 5448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=255;Dels=0.00;FS=14.376;HaplotypeScore=17.7652;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=2.562;QD=21.36;ReadPosRankSum=3.419;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:4,248:255:99:5448,641,0 chrVII 848688 . A G 3217.04 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3250,372,0 chrVII 849134 . C G 4684.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.69;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4684,540,0 chrVII 849405 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.62;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4540,519,0 chrVII 849423 . C T 4103.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6386;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.62;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4103,459,0 chrVII 849504 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=161;Dels=0.00;FS=2.897;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=1.107;QD=21.73;ReadPosRankSum=2.419;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3499,396,0 chrVII 849524 . G C 4003.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.52;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4003,450,0 chrVII 849533 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=4.311;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.451;QD=19.12;ReadPosRankSum=1.697;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3766,447,0 chrVII 849571 . C G 4441.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.9635;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.19;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4441,504,0 chrVII 849600 . A G 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.429;QD=21.14;ReadPosRankSum=1.714;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4102,474,0 chrVII 849797 . T G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.5951;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.433;QD=21.98;ReadPosRankSum=1.710;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3560,390,0 chrVII 849971 . G C 3877.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.15;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3877,447,0 chrVII 850035 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.62;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3689,417,0 chrVII 850043 . C T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.08;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4027,441,0 chrVII 850236 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.91;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4031,462,0 chrVII 850247 . C G 3828.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=8.3545;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.15;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3828,435,0 chrVII 850287 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.35;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4270,486,0 chrVII 850323 . T A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.24;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4360,498,0 chrVII 850359 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9905;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.48;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3651,393,0 chrVII 850367 . T A 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.019;QD=19.51;ReadPosRankSum=1.655;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3511,390,0 chrVII 850524 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.48;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3844,432,0 chrVII 850549 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.00;FS=6.810;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.681;QD=21.33;ReadPosRankSum=2.408;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3861,447,0 chrVII 850641 . T C 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.836;HaplotypeScore=4.2996;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.400;QD=22.67;ReadPosRankSum=1.666;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2391,273,0 chrVII 850893 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1716,201,0 chrVII 851797 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=2.987;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.111;QD=21.01;ReadPosRankSum=2.415;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3058,348,0 chrVII 851801 . A G 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=3.388;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.746;QD=19.47;ReadPosRankSum=1.660;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2836,330,0 chrVII 852002 . A G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=126;Dels=0.00;FS=2.580;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.608;QD=20.52;ReadPosRankSum=2.928;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2618,300,0 chrVII 852125 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2622,288,0 chrVII 852577 . A C 3085 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.0602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3118,360,0 chrVII 853120 . T C 2887 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.28;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2920,333,0 chrVII 853183 . G T 2811 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.82;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2844,318,0 chrVII 853206 . T C 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=4.472;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.163;QD=19.71;ReadPosRankSum=1.707;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2812,321,0 chrVII 853242 . A T 2924 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6528;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.03;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2957,333,0 chrVII 853252 . G T 3028 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.74;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3061,339,0 chrVII 853301 . T C 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=126;Dels=0.00;FS=3.417;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.084;QD=19.02;ReadPosRankSum=1.704;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2430,276,0 chrVII 853451 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=97;Dels=0.00;FS=2.588;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.073;QD=18.70;ReadPosRankSum=2.907;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1847,219,0 chrVII 853758 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.28;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4256,465,0 chrVII 854329 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.8235;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.85;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3863,429,0 chrVII 854729 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.4973;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.88;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3698,402,0 chrVII 854779 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3811,429,0 chrVII 854830 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.58;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3929,444,0 chrVII 855067 . C T 1518 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1551,174,0 chrVII 855163 . T C 282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.829;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=0.377;QD=12.26;ReadPosRankSum=0.980;SB=-4.599e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:36:315,36,0 chrVII 855164 . T C 259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=0.315;QD=11.26;ReadPosRankSum=1.261;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,21:23:33:292,33,0 chrVII 855522 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.5403;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.11;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3444,375,0 chrVII 856672 . A T 7577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=315;Dels=0.00;FS=6.062;HaplotypeScore=26.4229;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.204;QD=24.05;ReadPosRankSum=1.710;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,314:315:99:7577,826,0 chrVII 856876 . G A 6366.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=16.5131;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.27;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,312:314:99:6366,699,0 chrVII 857340 . G C 2979 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.3403;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=16.93;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3012,342,0 chrVII 857377 . T A 1071 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=10.40;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1104,126,0 chrVII 857500 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=1;QD=21.65;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2826,321,0 chrVII 857788 . C T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.71;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4338,477,0 chrVII 857872 . G A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.0848;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.51;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4151,465,0 chrVII 857899 . T C 3004 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.76;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3037,354,0 chrVII 858233 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3379,396,0 chrVII 858672 . C T 94.26 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=129.0143;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=0.66;SB=-3.703e+02 GT:AD:DP:GQ:PL 1/1:0,140:142:15:127,15,0 chrVII 858731 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.04;FS=0.000;HaplotypeScore=65.4301;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.77;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2754,306,0 chrVII 858949 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.93;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1952,210,0 chrVII 859410 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.4186;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.74;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4202,453,0 chrVII 859646 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0968;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.76;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2690,309,0 chrVII 859955 . G T 2548 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2581,288,0 chrVII 860468 . C A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.03;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3524,381,0 chrVII 860476 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.70;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3450,381,0 chrVII 860513 . T C 2811 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=20.22;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2844,327,0 chrVII 860609 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.52;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3457,378,0 chrVII 860862 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4007,456,0 chrVII 860945 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2064;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.17;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3858,438,0 chrVII 861134 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=191;Dels=0.00;FS=2.574;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.835;QD=20.38;ReadPosRankSum=2.931;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:3,186:191:99:3892,456,0 chrVII 861401 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=18.27;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1860,210,0 chrVII 861407 . A G 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;MQRankSum=-1.131;QD=16.10;ReadPosRankSum=1.697;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1611,183,0 chrVII 861419 . T G 1205 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.35;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1238,141,0 chrVII 861437 . G A 1074 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=12.79;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:84:99:1107,126,0 chrVII 861454 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=16.06;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1527,174,0 chrVII 861578 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.025;QD=23.44;ReadPosRankSum=1.707;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3281,375,0 chrVII 861715 . T G 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=181;Dels=0.00;FS=3.035;HaplotypeScore=14.4097;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.116;QD=23.18;ReadPosRankSum=2.368;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4195,474,0 chrVII 861857 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.772;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.637;QD=24.29;ReadPosRankSum=1.712;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4226,486,0 chrVII 861908 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.141;HaplotypeScore=13.7889;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.851;QD=23.49;ReadPosRankSum=1.691;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3994,459,0 chrVII 862031 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.81;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3977,435,0 chrVII 862103 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=150;Dels=0.00;FS=8.978;HaplotypeScore=17.3647;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.332;QD=22.70;ReadPosRankSum=3.389;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:4,146:150:99:3405,387,0 chrVII 862462 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=9.0392;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.177;QD=23.40;ReadPosRankSum=2.423;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4376,504,0 chrVII 862537 . T G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.509;QD=21.05;ReadPosRankSum=1.651;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3600,414,0 chrVII 862549 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0237;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.10;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3517,402,0 chrVII 862853 . C A 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.076;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3730;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=1.381;QD=19.75;ReadPosRankSum=0.508;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2758,306,0 chrVII 862855 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3730;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.764;QD=19.69;ReadPosRankSum=1.605;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2731,312,0 chrVII 862868 . A G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-1.172;QD=18.85;ReadPosRankSum=1.652;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2484,288,0 chrVII 862964 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.9496;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.58;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3705,408,0 chrVII 863057 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=16.0395;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.71;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3365,381,0 chrVII 863180 . A G 3209 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.92;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3242,369,0 chrVII 863209 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.43;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3264,369,0 chrVII 863249 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.577;QD=22.55;ReadPosRankSum=1.688;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3540,405,0 chrVII 863549 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.57;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3769,429,0 chrVII 863582 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=155;Dels=0.00;FS=10.103;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.612;QD=21.86;ReadPosRankSum=2.928;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:3388,381,0 chrVII 863849 . T C 2717 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2750,324,0 chrVII 864380 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=154;Dels=0.00;FS=5.627;HaplotypeScore=10.3734;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.353;QD=22.65;ReadPosRankSum=2.955;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3488,396,0 chrVII 864725 . T C 3784.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.45;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3784,435,0 chrVII 865628 . T C 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.489;QD=23.43;ReadPosRankSum=1.705;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3032,345,0 chrVII 865994 . T C 2636 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2669,306,0 chrVII 866222 . T A 1012 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1045,114,0 chrVII 866627 . A G 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6666;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.501;QD=22.68;ReadPosRankSum=1.711;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:3833,432,0 chrVII 866678 . A G 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=193;Dels=0.00;FS=6.046;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.234;QD=21.11;ReadPosRankSum=2.932;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4075,471,0 chrVII 867020 . C T 4608.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.25;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4608,498,0 chrVII 867751 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.12;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3000,327,0 chrVII 868348 . A C 3973.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3973,453,0 chrVII 868460 . T C 5156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=20.6490;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.332;QD=20.54;ReadPosRankSum=1.704;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5156,591,0 chrVII 869330 . A G 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.523;QD=21.35;ReadPosRankSum=1.667;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4568,528,0 chrVII 869660 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=24.21;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3946,438,0 chrVII 869690 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.36;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3600,393,0 chrVII 869707 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=19.54;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3121,345,0 chrVII 869717 . T A 3030 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.18;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3063,333,0 chrVII 870131 . C T 281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=96;Dels=0.01;FS=5.083;HaplotypeScore=75.6382;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-1.666;QD=2.93;ReadPosRankSum=-5.591;SB=-7.000e+01 GT:AD:DP:GQ:PL 1/1:75,20:95:36:314,36,0 chrVII 870475 . A T 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=210;Dels=0.00;FS=2.709;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.532;QD=22.97;ReadPosRankSum=2.426;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4824,525,0 chrVII 870646 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3545,399,0 chrVII 870793 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.18;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2606,288,0 chrVII 870916 . A G 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=3.711;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.479;QD=22.51;ReadPosRankSum=1.695;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,93:96:99:2194,252,0 chrVII 871006 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.92;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1965,213,0 chrVII 871021 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=16.85;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1701,186,0 chrVII 871036 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=17.37;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1596,180,0 chrVII 871517 . T C 1896 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.84;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1929,219,0 chrVII 871908 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1903,210,0 chrVII 872246 . C G 2695 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2728,306,0 chrVII 873382 . C T 2590 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=22.33;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2623,285,0 chrVII 873389 . T C 2498 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=2.986;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-0.010;QD=21.17;ReadPosRankSum=2.387;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2531,288,0 chrVII 873392 . G A 2517 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.14;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2550,288,0 chrVII 873442 . A G 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=7.0429;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.645;QD=17.02;ReadPosRankSum=1.707;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2399,282,0 chrVII 873460 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.0469;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.62;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2584,285,0 chrVII 873502 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2108;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.49;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2732,306,0 chrVII 873790 . C T 5187.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.6738;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5187,582,0 chrVII 873895 . G A 5667.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:5667,618,0 chrVII 874402 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.87;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2913,315,0 chrVII 874414 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.32;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2718,309,0 chrVII 874434 . A T 2338 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.70;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2371,261,0 chrVII 874466 . A T 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.235;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.386;QD=17.99;ReadPosRankSum=1.707;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2534,279,0 chrVII 874608 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.07;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2409,267,0 chrVII 874653 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=24.23;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2771,303,0 chrVII 875660 . T C 2390 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.25;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2423,276,0 chrVII 875675 . T C 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=3.039;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.310;QD=18.59;ReadPosRankSum=2.410;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2320,273,0 chrVII 875701 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.42;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1893,207,0 chrVII 875845 . A T 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.045;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.095;QD=24.58;ReadPosRankSum=1.705;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3155,348,0 chrVII 876081 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=21.49;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2633,291,0 chrVII 876178 . G T 1191 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.018;DP=76;Dels=0.00;FS=14.212;HaplotypeScore=8.2925;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=8;MQRankSum=2.808;QD=15.67;ReadPosRankSum=-2.484;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:15,60:76:97:1224,97,0 chrVII 876270 . C A 338.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;DP=64;Dels=0.00;FS=23.383;HaplotypeScore=23.0184;MLEAC=1;MLEAF=0.500;MQ=32.99;MQ0=0;MQRankSum=-5.859;QD=5.28;ReadPosRankSum=-5.069;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,24:64:99:368,0,798 chrVII 876274 . C T 343.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.682;DP=64;Dels=0.00;FS=23.383;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.99;MQ0=0;MQRankSum=-5.415;QD=5.36;ReadPosRankSum=-5.984;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,24:64:99:373,0,805 chrVII 876375 . G C 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.920;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;MQRankSum=0.322;QD=4.77;ReadPosRankSum=-0.684;SB=2.03 GT:AD:DP:GQ:PL 1/1:3,5:9:9:75,9,0 chrVII 876711 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.666;QD=23.37;ReadPosRankSum=2.405;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2580,300,0 chrVII 876915 . A G 5327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=254;Dels=0.00;FS=3.203;HaplotypeScore=10.6819;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.390;QD=20.97;ReadPosRankSum=1.705;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:5327,603,0 chrVII 876948 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.2123;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=20.36;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4358,480,0 chrVII 876960 . T A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=19.53;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4004,453,0 chrVII 876965 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=199;Dels=0.00;FS=8.737;HaplotypeScore=7.5652;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-1.209;QD=17.15;ReadPosRankSum=2.412;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:3413,393,0 chrVII 877134 . A C 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.477;QD=21.45;ReadPosRankSum=1.714;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4226,500,0 chrVII 877185 . C T 913 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=16.1792;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=13.04;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:946,108,0 chrVII 877197 . A C 445.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;DP=60;Dels=0.05;FS=6.238;HaplotypeScore=19.3639;MLEAC=1;MLEAF=0.500;MQ=39.01;MQ0=0;MQRankSum=-0.249;QD=7.43;ReadPosRankSum=5.708;SB=-2.328e+02 GT:AD:DP:GQ:PL 0/1:18,39:57:0:474,0,0 chrVII 877203 . G A 110.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.292;DP=65;Dels=0.00;FS=11.304;HaplotypeScore=10.4607;MLEAC=1;MLEAF=0.500;MQ=39.42;MQ0=0;MQRankSum=-0.616;QD=1.69;ReadPosRankSum=-0.232;SB=-2.060e+02 GT:AD:DP:GQ:PL 0/1:37,28:65:99:140,0,325 chrVII 877206 . G A 471 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=11.9587;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=7.25;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:57:504,57,0 chrVII 877209 . C T 503 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.5257;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;QD=8.11;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:63:536,63,0 chrVII 878070 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7396;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.376;QD=23.55;ReadPosRankSum=0.814;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3910,426,0 chrVII 878298 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.99;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2912,324,0 chrVII 878396 . G A 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=117;Dels=0.00;FS=5.254;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.608;QD=23.74;ReadPosRankSum=1.641;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,113:117:99:2811,312,0 chrVII 878834 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=1;QD=22.59;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1592,180,0 chrVII 878835 . A T 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.637;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=1;MQRankSum=-1.060;QD=23.62;ReadPosRankSum=1.681;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1639,180,0 chrVII 879079 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=24.83;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1597,183,0 chrVII 879163 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=24.34;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1956,225,0 chrVII 879208 . A T 1590 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6547;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=21.49;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1623,183,0 chrVII 879224 . T C 1126 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=17.06;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1159,138,0 chrVII 879230 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=18.61;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1224,138,0 chrVII 879247 . T C 1152 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=16.00;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1185,144,0 chrVII 879267 . C G 1279 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=16.40;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1312,153,0 chrVII 879283 . A G 1213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=80;Dels=0.00;FS=2.421;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;MQRankSum=0.805;QD=15.16;ReadPosRankSum=2.910;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:3,75:80:99:1246,144,0 chrVII 879296 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=18.37;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1558,174,0 chrVII 879340 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.27;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1926,219,0 chrVII 879431 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.81;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1499,171,0 chrVII 879438 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.81;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1481,168,0 chrVII 879687 . T G 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=2.752;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.953;QD=23.95;ReadPosRankSum=2.325;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3305,372,0 chrVII 879875 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.73;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3673,426,0 chrVII 879882 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.304;QD=22.25;ReadPosRankSum=1.669;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3671,417,0 chrVII 879887 . A C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=21.48;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3652,411,0 chrVII 879907 . T G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=14.2280;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.75;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3507,396,0 chrVII 880052 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.15;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2934,327,0 chrVII 880304 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.1552;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.69;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2824,321,0 chrVII 880399 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.25;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3538,402,0 chrVII 880498 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.0234;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.36;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3808,420,0 chrVII 880548 . C T 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.7672;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.446;QD=23.36;ReadPosRankSum=0.151;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4812,534,0 chrVII 881223 . C A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.0747;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.15;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3634,399,0 chrVII 881427 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.5429;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.47;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4359,498,0 chrVII 881628 . C G 5347.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=10.6200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5347,627,0 chrVII 882239 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=119.5958;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.58;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3126,342,0 chrVII 882479 . G T 3172 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5713;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.67;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3205,366,0 chrVII 882613 . T C 2075 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.54;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2108,234,0 chrVII 882615 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.76;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2109,237,0 chrVII 882679 . G C 1849 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=17.12;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1882,213,0 chrVII 882723 . A G 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.095;DP=112;Dels=0.00;FS=2.970;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.543;QD=17.39;ReadPosRankSum=2.405;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:1981,231,0 chrVII 882762 . A G 2725 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.90;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2758,315,0 chrVII 883103 . G A 8167.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=34.6627;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.01;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:0,368:371:99:8167,915,0 chrVII 883874 . C G 2921 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.80;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2954,342,0 chrVII 884168 . C G 4449.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.60;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4449,507,0 chrVII 884326 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2608,288,0 chrVII 884871 . C T 4860.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.25;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4860,531,0 chrVII 885001 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.1421;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.41;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3900,429,0 chrVII 885165 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.11;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4688,522,0 chrVII 885274 . T G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.7373;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.58;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3846,447,0 chrVII 885746 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6576;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.59;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2766,312,0 chrVII 885812 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.78;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2818,309,0 chrVII 885822 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.94;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2734,309,0 chrVII 885994 . G T 2931 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.39;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2964,342,0 chrVII 886006 . T C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.093;QD=20.89;ReadPosRankSum=-0.172;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2770,324,0 chrVII 886023 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.551;QD=21.23;ReadPosRankSum=1.706;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2835,324,0 chrVII 886106 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.75;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3081,336,0 chrVII 886758 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.18;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3025,333,0 chrVII 886759 . G T 2967 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.02;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3000,330,0 chrVII 886829 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=164;Dels=0.00;FS=7.010;HaplotypeScore=10.5665;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.605;QD=20.23;ReadPosRankSum=2.404;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3318,381,0 chrVII 887135 . T C 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=2.676;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.368;QD=22.15;ReadPosRankSum=2.399;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2182,252,0 chrVII 887281 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.63;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2892,315,0 chrVII 887698 . G T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7015;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.06;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4012,450,0 chrVII 888005 . T C 2769 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.30;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2802,330,0 chrVII 888247 . T A 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.706;QD=21.65;ReadPosRankSum=1.689;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1787,201,0 chrVII 888305 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.78;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1425,156,0 chrVII 888345 . A T 969 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1002,111,0 chrVII 888438 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.83;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1050,120,0 chrVII 888451 . G T 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;MQRankSum=-0.650;QD=18.06;ReadPosRankSum=-0.866;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:900,102,0 chrVII 888453 . G A 886 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=17.72;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:919,102,0 chrVII 888479 . A C 835 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=17.40;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:868,99,0 chrVII 888499 . G A 545 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.1889;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=12.67;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:63:578,63,0 chrVII 888716 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.47;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2030,231,0 chrVII 889004 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3425,384,0 chrVII 889214 . T C 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=213;Dels=0.00;FS=2.856;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.124;QD=21.39;ReadPosRankSum=2.403;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4556,522,0 chrVII 889361 . T C 5896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=263;Dels=0.00;FS=9.113;HaplotypeScore=19.6884;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.184;QD=22.42;ReadPosRankSum=3.414;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:4,257:263:99:5896,672,0 chrVII 889436 . G A 4991.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.77;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4991,564,0 chrVII 889601 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.86;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3674,423,0 chrVII 889607 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.42;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3573,399,0 chrVII 889661 . G A 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DP=139;Dels=0.04;FS=0.000;HaplotypeScore=12.3573;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.945;QD=18.11;ReadPosRankSum=1.286;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2550,264,0 chrVII 889729 . A T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.0868;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.28;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4027,438,0 chrVII 890075 . C T 4070.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=18.3426;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.58;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4070,459,0 chrVII 890171 . T C 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=216;Dels=0.00;FS=2.765;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.779;QD=21.06;ReadPosRankSum=2.415;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4548,516,0 chrVII 890186 . G A 4501.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.24;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:4501,513,0 chrVII 890237 . A G 4857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=255;Dels=0.00;FS=12.094;HaplotypeScore=15.6391;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=1.075;QD=19.05;ReadPosRankSum=2.885;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:3,251:255:99:4857,567,0 chrVII 890255 . A G 4990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=262;Dels=0.00;FS=4.123;HaplotypeScore=7.1782;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.613;QD=19.05;ReadPosRankSum=1.706;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:4990,567,0 chrVII 890402 . G A 6263.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=9.0407;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.75;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:6263,705,0 chrVII 890426 . A G 5855.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=10.9522;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=21.37;SB=-3.288e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5855,666,0 chrVII 890462 . T C 5029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=257;Dels=0.00;FS=8.300;HaplotypeScore=24.4755;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.169;QD=19.57;ReadPosRankSum=2.421;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:2,252:257:99:5029,588,0 chrVII 890603 . A T 4352.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=17.7379;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.65;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4352,483,0 chrVII 891078 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.63;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4390,489,0 chrVII 891371 . T C 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.339;QD=22.42;ReadPosRankSum=1.662;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4462,507,0 chrVII 891431 . A C 4999.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.9470;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.93;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4999,576,0 chrVII 891507 . G A 5235.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.02;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5235,582,0 chrVII 891512 . G C 4742.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.31;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:4742,546,0 chrVII 891611 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=4.452;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.660;QD=20.32;ReadPosRankSum=1.717;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4551,522,0 chrVII 891656 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.67;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4398,477,0 chrVII 891990 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.99;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4134,471,0 chrVII 892025 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.70;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4041,453,0 chrVII 892112 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.098;QD=20.80;ReadPosRankSum=1.708;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2987,345,0 chrVII 892181 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6760;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.49;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,156:162:99:3320,372,0 chrVII 892212 . G T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.98;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3700,414,0 chrVII 892452 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=142;Dels=0.00;FS=2.953;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.079;QD=23.67;ReadPosRankSum=2.344;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3361,384,0 chrVII 892541 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.88;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3364,366,0 chrVII 892549 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.87;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2854,315,0 chrVII 892563 . A C 2404 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.08;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2437,285,0 chrVII 893054 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.98;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2912,321,0 chrVII 893214 . G T 3060 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.91;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3093,339,0 chrVII 893319 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.33;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3605,396,0 chrVII 893535 . A T 3064 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.35;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3097,345,0 chrVII 893550 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.52;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3370,372,0 chrVII 893850 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=170;Dels=0.00;FS=8.980;HaplotypeScore=14.4494;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=3.066;QD=22.36;ReadPosRankSum=3.097;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:4,165:170:99:3801,435,0 chrVII 894066 . A T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=18.71;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3741,408,0 chrVII 894078 . T A 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=4.085;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.602;QD=17.58;ReadPosRankSum=1.695;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3288,363,0 chrVII 894109 . T C 3160 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=15.41;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:3193,378,0 chrVII 894129 . C A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=16.37;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:3422,384,0 chrVII 894312 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7312;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.408;QD=24.93;ReadPosRankSum=-1.600;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3964,432,0 chrVII 894371 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=24.13;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3571,393,0 chrVII 894419 . T C 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.233;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.650;QD=19.31;ReadPosRankSum=1.667;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3123,354,0 chrVII 894432 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=27.8509;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=17.91;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3078,354,0 chrVII 894512 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=164;Dels=0.02;FS=3.017;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.114;QD=18.35;ReadPosRankSum=2.419;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3042,348,0 chrVII 894515 . G C 2875 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.02;FS=0.000;HaplotypeScore=18.3254;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=16.24;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:2908,342,0 chrVII 894550 . T C 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=224;Dels=0.00;FS=5.210;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.708;QD=21.08;ReadPosRankSum=3.326;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:4,217:224:99:4723,537,0 chrVII 894616 . A G 6061.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=5.5595;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.96;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6061,707,0 chrVII 894638 . G A 5506.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.3037;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.75;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5506,630,0 chrVII 894708 . G T 5237.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.80;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5237,573,0 chrVII 895096 . A G 2829 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.10;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2862,324,0 chrVII 895181 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2509,282,0 chrVII 895701 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=107;Dels=0.00;FS=3.859;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.214;QD=22.87;ReadPosRankSum=1.635;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2480,285,0 chrVII 895751 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.97;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2445,279,0 chrVII 895788 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.30;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2643,300,0 chrVII 895958 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.4686;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.00;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3381,381,0 chrVII 896067 . A G 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=3.376;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.840;QD=23.99;ReadPosRankSum=1.680;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4774,540,0 chrVII 896345 . T C 4120.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.35;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4120,483,0 chrVII 896357 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.51;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4000,453,0 chrVII 896369 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=172;Dels=0.00;FS=6.462;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.578;QD=18.34;ReadPosRankSum=2.364;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3188,354,0 chrVII 896389 . T C 2843 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=16.82;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2876,324,0 chrVII 896765 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.761;QD=21.07;ReadPosRankSum=1.706;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2835,330,0 chrVII 896783 . T C 2550 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2147;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.07;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2583,300,0 chrVII 896902 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3535,384,0 chrVII 897158 . C A 2046 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.25;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2079,231,0 chrVII 897236 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.72;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1157,132,0 chrVII 897252 . G C 764 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=16.98;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:90:797,90,0 chrVII 897290 . C T 865 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=13.95;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:898,102,0 chrVII 897311 . A T 1094 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=85.0423;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=12.57;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1127,126,0 chrVII 897395 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=7.035;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.180;QD=22.67;ReadPosRankSum=1.696;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2209,252,0 chrVII 897448 . A G 2631 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=24.59;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2664,309,0 chrVII 897484 . T A 2603 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=23.66;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2636,303,0 chrVII 897531 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=1.150;QD=21.46;ReadPosRankSum=1.704;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2715,315,0 chrVII 897580 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.6346;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.90;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2880,318,0 chrVII 897636 . A G 2889 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.05;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2922,333,0 chrVII 897665 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.00;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2788,318,0 chrVII 897687 . T C 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.789;QD=18.72;ReadPosRankSum=1.685;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2785,318,0 chrVII 897749 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=174;Dels=0.00;FS=4.899;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.751;QD=21.39;ReadPosRankSum=1.712;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3721,443,0 chrVII 897909 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.8536;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=23.07;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4314,474,0 chrVII 897999 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.1421;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.363;QD=19.96;ReadPosRankSum=1.716;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4312,495,0 chrVII 898026 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=16.96;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3274,360,0 chrVII 898029 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=37.54;MQ0=0;QD=15.18;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3039,345,0 chrVII 898038 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=212;Dels=0.00;FS=2.984;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;MQRankSum=-1.905;QD=13.25;ReadPosRankSum=2.403;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:2841,333,0 chrVII 898059 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.7520;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=13.94;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:2751,306,0 chrVII 898083 . T C 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=-1.480;QD=13.00;ReadPosRankSum=1.698;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:2710,312,0 chrVII 898092 . C G 2731 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.5411;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=13.32;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:2764,315,0 chrVII 898107 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=14.21;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3017,339,0 chrVII 898653 . C T 4382.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.2180;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.69;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4382,477,0 chrVII 898788 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.83;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3089,342,0 chrVII 899421 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=9.0508;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.457;QD=20.12;ReadPosRankSum=2.420;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3319,381,0 chrVII 899490 . T C 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=2.987;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.391;QD=20.78;ReadPosRankSum=2.398;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3046,345,0 chrVII 899896 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.57;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3215,354,0 chrVII 900087 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.74;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3239,360,0 chrVII 900140 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.57;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3010,339,0 chrVII 900146 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.143;QD=21.40;ReadPosRankSum=1.706;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2879,333,0 chrVII 900198 . G A 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.141;QD=21.68;ReadPosRankSum=-0.551;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2852,291,0 chrVII 900619 . A G 4858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=9.713;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.833;QD=23.47;ReadPosRankSum=2.414;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4858,570,0 chrVII 900753 . C A 4930.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.62;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4930,549,0 chrVII 902391 . A T 2081 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.63;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2114,234,0 chrVII 902479 . A G 2280 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.57;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2313,261,0 chrVII 902661 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.70;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3496,405,0 chrVII 903030 . A G 4946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=296;Dels=0.00;FS=6.837;HaplotypeScore=8.7557;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=-0.245;QD=16.71;ReadPosRankSum=2.433;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:2,294:296:99:4946,570,0 chrVII 903039 . G A 4799.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=17.58;SB=-3.297e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:4799,513,0 chrVII 903048 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=15.41;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:4177,468,0 chrVII 903061 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=12.68;SB=-3.243e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:3537,381,0 chrVII 903078 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=276;Dels=0.00;FS=3.878;HaplotypeScore=10.2011;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;MQRankSum=-0.678;QD=11.71;ReadPosRankSum=1.720;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:3268,366,0 chrVII 903117 . G A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=16.37;SB=-3.795e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:4927,546,0 chrVII 903129 . A G 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=301;Dels=0.00;FS=6.062;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=-1.798;QD=16.81;ReadPosRankSum=2.976;SB=-3.784e+03 GT:AD:DP:GQ:PL 1/1:3,296:301:99:5059,576,0 chrVII 903216 . A G 5287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=241;Dels=0.00;FS=2.582;HaplotypeScore=10.4354;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.056;QD=21.94;ReadPosRankSum=2.399;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5287,603,0 chrVII 903256 . C T 5184.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.6492;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=22.34;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5184,573,0 chrVII 903291 . A G 5274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=-1.688;QD=22.07;ReadPosRankSum=1.718;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5274,606,0 chrVII 903336 . C T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=20.0802;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=22.41;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4571,513,0 chrVII 903567 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.92;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3307,378,0 chrVII 903579 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=173;Dels=0.00;FS=6.090;HaplotypeScore=5.3487;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-1.509;QD=19.33;ReadPosRankSum=2.608;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3344,375,0 chrVII 903582 . T G 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.574;DP=175;Dels=0.00;FS=3.035;HaplotypeScore=3.4559;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.822;QD=18.27;ReadPosRankSum=1.000;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3230,375,0 chrVII 903621 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=2.862;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.524;QD=16.82;ReadPosRankSum=2.304;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3144,372,0 chrVII 903656 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.91;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3564,387,0 chrVII 903777 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=146;Dels=0.00;FS=2.834;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.833;QD=20.64;ReadPosRankSum=2.416;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3046,342,0 chrVII 903790 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.166;QD=20.68;ReadPosRankSum=1.709;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3197,366,0 chrVII 904076 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.2546;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.894;QD=22.10;ReadPosRankSum=1.710;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3514,408,0 chrVII 904221 . A C 5173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=5.036;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.693;QD=23.30;ReadPosRankSum=1.716;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:5173,585,0 chrVII 904249 . C T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.6390;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.81;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4183,462,0 chrVII 904347 . T C 6529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=303;Dels=0.00;FS=8.428;HaplotypeScore=18.2451;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.133;QD=21.55;ReadPosRankSum=2.392;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:2,298:303:99:6529,764,0 chrVII 904567 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3120,345,0 chrVII 904780 . C A 2250 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.63;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2283,255,0 chrVII 904835 . T G 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=99;Dels=0.00;FS=3.336;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.446;QD=21.23;ReadPosRankSum=1.661;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,96:99:99:2135,243,0 chrVII 904895 . A G 2388 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.51;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2421,279,0 chrVII 904921 . G C 2088 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.16;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2121,243,0 chrVII 904943 . C A 1904 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=91.5061;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.70;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1937,213,0 chrVII 905027 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=1.503;QD=22.72;ReadPosRankSum=1.707;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3145,357,0 chrVII 905084 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.524;DP=127;Dels=0.00;FS=7.977;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-1.137;QD=20.28;ReadPosRankSum=3.637;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:5,122:127:99:2608,297,0 chrVII 905104 . T C 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=2.703;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.290;QD=21.39;ReadPosRankSum=2.370;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2664,297,0 chrVII 905148 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=9.4077;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.21;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3532,387,0 chrVII 905266 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=207;Dels=0.00;FS=12.607;HaplotypeScore=10.7240;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.925;QD=19.37;ReadPosRankSum=2.865;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:3,199:207:99:4010,456,0 chrVII 905275 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.1975;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.89;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4158,471,0 chrVII 905665 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=21.7003;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.415;QD=16.60;ReadPosRankSum=2.425;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:2,200:202:99:3353,381,0 chrVII 905694 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.6656;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.06;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,186:191:99:3450,396,0 chrVII 905710 . T G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.687;DP=184;Dels=0.00;FS=6.955;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.016;QD=19.37;ReadPosRankSum=2.489;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3564,411,0 chrVII 906181 . A T 7246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=323;Dels=0.00;FS=3.662;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.721;QD=22.43;ReadPosRankSum=1.689;SB=-3.791e+03 GT:AD:DP:GQ:PL 1/1:1,322:323:99:7246,793,0 chrVII 906494 . C T 4649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.340;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.1092;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.655;QD=20.75;ReadPosRankSum=-0.124;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4649,520,0 chrVII 906630 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.52;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4098,465,0 chrVII 906758 . A G 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=236;Dels=0.00;FS=2.997;HaplotypeScore=15.2128;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.848;QD=21.06;ReadPosRankSum=2.418;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:4970,573,0 chrVII 906845 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.77;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4615,510,0 chrVII 906984 . C T 7170.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=13.8116;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.66;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,301:303:99:7170,784,0 chrVII 907109 . T A 7806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=353;Dels=0.00;FS=3.001;HaplotypeScore=16.8811;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.740;QD=22.11;ReadPosRankSum=2.345;SB=-4.040e+03 GT:AD:DP:GQ:PL 1/1:2,351:353:99:7806,870,0 chrVII 907178 . A G 7645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=354;Dels=0.00;FS=3.023;HaplotypeScore=29.6888;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.831;QD=21.60;ReadPosRankSum=2.435;SB=-4.404e+03 GT:AD:DP:GQ:PL 1/1:2,348:354:99:7645,864,0 chrVII 907442 . C T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.51;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4817,546,0 chrVII 907598 . T C 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.212;QD=21.52;ReadPosRankSum=1.673;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5058,585,0 chrVII 908105 . T C 6279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=290;Dels=0.00;FS=3.695;HaplotypeScore=13.3506;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.431;QD=21.65;ReadPosRankSum=1.720;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:1,287:290:99:6279,729,0 chrVII 908162 . C A 5211.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=16.7426;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.44;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5211,594,0 chrVII 908324 . T A 4700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.196;DP=282;Dels=0.00;FS=8.965;HaplotypeScore=22.8618;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.114;QD=16.67;ReadPosRankSum=3.375;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:4,278:282:99:4700,522,0 chrVII 908833 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=17.5381;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.07;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1467,162,0 chrVII 909136 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.7441;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.421;QD=21.51;ReadPosRankSum=1.688;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3356,384,0 chrVII 909541 . T C 3028 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.74;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3061,351,0 chrVII 909551 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.69;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2986,339,0 chrVII 909602 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.93;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3083,336,0 chrVII 909620 . T C 2998 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.22;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3031,348,0 chrVII 909722 . A G 2981 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.92;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3014,342,0 chrVII 909752 . G T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.04;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3630,399,0 chrVII 910249 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=43.4929;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.79;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1166,135,0 chrVII 910360 . G C 2012 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.63;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2045,240,0 chrVII 910494 . T G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7400;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.299;QD=22.87;ReadPosRankSum=1.705;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2961,336,0 chrVII 910560 . A T 2699 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.6744;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.76;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2732,306,0 chrVII 910572 . A G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=3.045;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.459;QD=19.86;ReadPosRankSum=2.391;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2535,291,0 chrVII 910647 . T C 2398 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.3804;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.67;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2431,270,0 chrVII 911277 . T C 3049 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.09;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3082,348,0 chrVII 911494 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=4.041;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.878;QD=21.44;ReadPosRankSum=1.683;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3077,363,0 chrVII 911599 . T C 1999 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.27;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2032,231,0 chrVII 911779 . T A 717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=56;Dels=0.04;FS=4.771;HaplotypeScore=28.6116;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.476;QD=12.80;ReadPosRankSum=1.604;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:84:750,84,0 chrVII 911808 . T G 453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=43.3220;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;MQRankSum=-0.490;QD=8.55;ReadPosRankSum=1.602;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:57:486,57,0 chrVII 911857 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.03;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1710,189,0 chrVII 912297 . T C 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=197;Dels=0.00;FS=4.410;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.202;QD=20.85;ReadPosRankSum=1.661;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4108,471,0 chrVII 912431 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.687;DP=170;Dels=0.00;FS=10.413;HaplotypeScore=23.4963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.320;QD=19.94;ReadPosRankSum=2.935;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3389,396,0 chrVII 912560 . C T 5822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.1225;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.408;QD=23.57;ReadPosRankSum=-1.042;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5822,630,0 chrVII 912779 . T C 5070.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.5039;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.43;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5070,579,0 chrVII 913000 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.460;QD=23.32;ReadPosRankSum=1.710;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3685,426,0 chrVII 913222 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3556,408,0 chrVII 913393 . T G 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=3.210;HaplotypeScore=12.6386;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.187;QD=21.64;ReadPosRankSum=1.674;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3874,453,0 chrVII 913982 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.86;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3555,390,0 chrVII 913983 . T A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=20.12;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3582,393,0 chrVII 914066 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.72;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3613,411,0 chrVII 914107 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.0991;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.87;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3819,423,0 chrVII 914517 . C T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=12.4913;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=17.60;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,249:252:99:4435,489,0 chrVII 914538 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.65;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:4645,516,0 chrVII 914816 . C G 3502.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.19;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3502,405,0 chrVII 915691 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=182;Dels=0.00;FS=6.696;HaplotypeScore=8.9488;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.174;QD=22.28;ReadPosRankSum=2.355;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4055,459,0 chrVII 915939 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=3.264;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.945;QD=22.77;ReadPosRankSum=1.673;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4008,468,0 chrVII 916059 . G A 4980.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.1026;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.49;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4980,543,0 chrVII 916953 . T C 2770 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.5062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2803,321,0 chrVII 917004 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2962,321,0 chrVII 917290 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3768,417,0 chrVII 917381 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.85;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3186,360,0 chrVII 917406 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.41;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3265,372,0 chrVII 917454 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=3.017;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.931;QD=21.49;ReadPosRankSum=2.418;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3374,381,0 chrVII 917686 . T A 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=126;Dels=0.00;FS=2.991;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.107;QD=20.64;ReadPosRankSum=2.372;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2634,300,0 chrVII 918119 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2678,306,0 chrVII 918156 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.408;DP=125;Dels=0.00;FS=12.328;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.397;QD=20.84;ReadPosRankSum=3.773;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:5,120:125:99:2638,297,0 chrVII 918499 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.33;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3043,345,0 chrVII 918846 . T C 4325.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.8995;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.51;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4325,489,0 chrVII 918902 . A G 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=194;Dels=0.00;FS=6.465;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.598;QD=22.94;ReadPosRankSum=2.347;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:2,189:194:99:4451,504,0 chrVII 918971 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.34;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3999,456,0 chrVII 919087 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.54;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4049,447,0 chrVII 919132 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=188;Dels=0.00;FS=2.984;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.660;QD=19.29;ReadPosRankSum=2.423;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3626,408,0 chrVII 919139 . A T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=20.89;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3719,414,0 chrVII 919329 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1175;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.59;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3610,396,0 chrVII 919382 . T C 2418 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.8796;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.32;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2451,288,0 chrVII 919415 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.11;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2996,330,0 chrVII 919439 . A T 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.300;QD=22.22;ReadPosRankSum=1.706;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2988,327,0 chrVII 919531 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2312,258,0 chrVII 919947 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.83;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1263,141,0 chrVII 920266 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=20.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.11;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4160,456,0 chrVII 920907 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=45.7810;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.61;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1311,147,0 chrVII 920986 . G T 1307 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.42;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1340,150,0 chrVII 921308 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.58;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4197,456,0 chrVII 922267 . T C 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1078;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.552;QD=22.49;ReadPosRankSum=1.578;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3092,348,0 chrVII 922984 . G C 2867 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2900,333,0 chrVII 923677 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.49;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1900,210,0 chrVII 923851 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.57;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2064,228,0 chrVII 924796 . G C 3521.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.86;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3521,396,0 chrVII 924899 . A G 3868.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.02;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3868,438,0 chrVII 925190 . G T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3301,366,0 chrVII 925313 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2968,327,0 chrVII 926236 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=132;Dels=0.00;FS=3.018;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.012;QD=22.80;ReadPosRankSum=2.412;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:3042,348,0 chrVII 926465 . T C 3109 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2488;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.21;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3142,366,0 chrVII 926609 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3563,405,0 chrVII 927088 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.86;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2273,258,0 chrVII 927149 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.20;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1942,219,0 chrVII 927158 . A G 1708 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.90;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1741,198,0 chrVII 927284 . T C 2520 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.91;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2553,297,0 chrVII 927341 . T A 1981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=87;Dels=0.00;FS=3.267;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.458;QD=22.77;ReadPosRankSum=1.653;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2014,219,0 chrVII 927609 . A G 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=97;Dels=0.00;FS=2.606;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.031;QD=19.71;ReadPosRankSum=2.886;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1945,219,0 chrVII 927650 . A G 2504 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2537,288,0 chrVII 927723 . C A 2287 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.10;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2320,258,0 chrVII 927893 . C T 2495 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.9367;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.10;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2528,282,0 chrVII 927992 . G C 2217 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2250,258,0 chrVII 928933 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.42;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2075,228,0 chrVII 928937 . A C 1941 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.31;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1974,225,0 chrVII 929033 . A C 2379 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2412,279,0 chrVII 929327 . A C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=3.310;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.709;QD=22.97;ReadPosRankSum=1.686;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3469,396,0 chrVII 929519 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.50;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2471,276,0 chrVII 929523 . G A 2280 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.39;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2313,261,0 chrVII 930105 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=149;Dels=0.00;FS=3.069;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.726;QD=21.48;ReadPosRankSum=1.615;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3233,369,0 chrVII 930476 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=23.26;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3977,435,0 chrVII 930575 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.56;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3452,390,0 chrVII 930638 . A G 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=127;Dels=0.00;FS=5.281;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.683;QD=20.94;ReadPosRankSum=3.389;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:4,123:127:99:2693,309,0 chrVII 930769 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.15;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2106,237,0 chrVII 930881 . T C 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=94;Dels=0.00;FS=2.876;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-0.066;QD=20.84;ReadPosRankSum=2.397;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:2,91:94:99:1992,231,0 chrVII 930912 . T G 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=0.776;QD=22.95;ReadPosRankSum=1.692;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2030,228,0 chrVII 930939 . A C 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.964;HaplotypeScore=49.2828;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.678;QD=20.64;ReadPosRankSum=1.682;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1457,168,0 chrVII 931052 . G T 1971 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=23.19;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2004,228,0 chrVII 931078 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=22.75;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1967,222,0 chrVII 931113 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=11.3834;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=20.04;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1496,174,0 chrVII 931123 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=19.83;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1302,147,0 chrVII 931166 . A C 503 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;MQRankSum=-2.281;QD=17.34;ReadPosRankSum=2.281;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:2,27:29:60:536,60,0 chrVII 931462 . G T 113.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=9;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=1;MQRankSum=-0.747;QD=12.63;ReadPosRankSum=0.747;SB=-2.539e+01 GT:AD:DP:GQ:PL 0/1:1,8:9:5:143,0,5 chrVII 931491 . T G 177.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=1;QD=17.70;SB=-7.977e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:210,24,0 chrVII 931551 . T G 147.08 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.87;MQ0=0;QD=16.34;SB=1.98 GT:AD:DP:GQ:PL 1/1:0,8:9:21:180,21,0 chrVII 931595 . C T 183.03 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=22.88;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:24:216,24,0 chrVII 931627 . T A 183.03 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=22.88;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:24:216,24,0 chrVII 931842 . T C 35.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.35;MQ0=17;MQRankSum=0.727;QD=1.67;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,8:21:15:65,0,15 chrVII 931885 . T A 68.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=47;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.10;MQ0=42;MQRankSum=0.731;QD=1.45;ReadPosRankSum=0.731;SB=-2.608e+00 GT:AD:DP:GQ:PL 0/1:40,7:47:13:98,0,13 chrVII 931886 . G A 69.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=48;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.98;MQ0=43;MQRankSum=0.731;QD=1.44;ReadPosRankSum=0.731;SB=-2.636e+00 GT:AD:DP:GQ:PL 0/1:41,7:48:12:99,0,12 chrVII 932056 . A G 338 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=9.66;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:45:371,45,0 chrVII 932116 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.06;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:996,114,0 chrVII 932191 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=23.88;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2851,309,0 chrVII 932226 . A T 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=5.597;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.914;QD=26.17;ReadPosRankSum=1.623;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3324,369,0 chrVII 932340 . T C 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.211;QD=22.49;ReadPosRankSum=1.695;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2125,243,0 chrVII 932498 . T C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.111;QD=22.94;ReadPosRankSum=1.695;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2212,252,0 chrVII 932540 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.75;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2382,273,0 chrVII 932723 . T C 2437 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2470,282,0 chrVII 933365 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=117;Dels=0.00;FS=2.595;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.052;QD=22.33;ReadPosRankSum=2.853;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2646,309,0 chrVII 933512 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3494,396,0 chrVII 933869 . G T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.65;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4116,459,0 chrVII 934184 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.0942;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.027;QD=20.71;ReadPosRankSum=1.679;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2725,306,0 chrVII 934463 . C T 2089 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.54;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2122,237,0 chrVII 934700 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.51;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3526,390,0 chrVII 934919 . C T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.25;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:4395,486,0 chrVII 935285 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3448,402,0 chrVII 935766 . T C 2617 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.16;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2650,300,0 chrVII 935861 . T A 1710 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.80;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1743,195,0 chrVII 936030 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.20;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:2120,240,0 chrVII 936066 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.02;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2213,243,0 chrVII 936067 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.08;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2001,222,0 chrVII 936350 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.72;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4062,468,0 chrVII 936368 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.3408;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.90;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4140,468,0 chrVII 936413 . G C 3316.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=16.34;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3316,387,0 chrVII 936416 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=197;Dels=0.00;FS=9.238;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-0.649;QD=16.82;ReadPosRankSum=2.890;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:3,189:197:99:3313,378,0 chrVII 936948 . G C 2560 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.65;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2593,294,0 chrVII 937376 . T G 4211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=199;Dels=0.00;FS=3.032;HaplotypeScore=20.3430;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.371;QD=21.16;ReadPosRankSum=2.425;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4211,480,0 chrVII 937670 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.1631;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.78;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4051,459,0 chrVII 937718 . G C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.96;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3313,390,0 chrVII 937733 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.6605;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.78;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3450,384,0 chrVII 937780 . A G 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.101;DP=125;Dels=0.00;FS=8.237;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.292;QD=18.87;ReadPosRankSum=3.386;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:4,120:125:99:2392,273,0 chrVII 937797 . G T 2374 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=20.82;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2407,270,0 chrVII 937835 . T C 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=118;Dels=0.00;FS=6.133;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.043;QD=16.14;ReadPosRankSum=2.888;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:1938,219,0 chrVII 937838 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=16.51;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2031,222,0 chrVII 937863 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=16.90;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2128,237,0 chrVII 938065 . T G 3437.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.07;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3437,387,0 chrVII 938120 . T C 2721 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.94;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2754,309,0 chrVII 938391 . T C 3379.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.65;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3379,384,0 chrVII 938447 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=182;Dels=0.00;FS=6.696;HaplotypeScore=11.0324;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.771;QD=22.05;ReadPosRankSum=2.368;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4013,456,0 chrVII 938528 . C A 5260.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.9293;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.97;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5260,582,0 chrVII 938768 . A C 2827 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.94;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2860,324,0 chrVII 938789 . T C 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=124;Dels=0.00;FS=6.892;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.417;QD=18.71;ReadPosRankSum=1.718;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,119:124:99:2353,267,0 chrVII 938924 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.86;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3703,408,0 chrVII 939184 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.12;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3628,414,0 chrVII 939208 . G T 2745 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.61;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2778,303,0 chrVII 939212 . C A 2623 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.29;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2656,300,0 chrVII 939290 . T C 2187 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.63;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2220,258,0 chrVII 939318 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.102;QD=21.37;ReadPosRankSum=1.703;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2598,300,0 chrVII 939675 . A G 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=0.226;QD=20.90;ReadPosRankSum=1.682;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1475,171,0 chrVII 939701 . G A 1013 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=18.42;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1046,114,0 chrVII 939713 . A G 959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.592;DP=64;Dels=0.00;FS=5.399;HaplotypeScore=45.0771;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;MQRankSum=-1.345;QD=14.98;ReadPosRankSum=2.887;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:3,59:64:99:992,114,0 chrVII 939718 . G A 1140 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=17.01;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1173,129,0 chrVII 939793 . A G 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=106;Dels=0.00;FS=10.697;HaplotypeScore=92.9056;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.199;QD=18.45;ReadPosRankSum=2.379;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,103:106:99:1989,237,0 chrVII 940048 . G C 3057 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.3665;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.48;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3090,348,0 chrVII 940082 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.76;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2462,270,0 chrVII 940087 . A G 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.751;QD=18.93;ReadPosRankSum=1.701;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2172,246,0 chrVII 940459 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3648,396,0 chrVII 940564 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.410;QD=21.95;ReadPosRankSum=1.687;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3381,387,0 chrVII 940705 . G C 1301 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.98;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1334,156,0 chrVII 941028 . A G 1947 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.64;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1980,219,0 chrVII 941049 . C A 1725 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.96;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1758,198,0 chrVII 941172 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.62;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3597,393,0 chrVII 941678 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3613,408,0 chrVII 942173 . T A 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4449;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.708;QD=23.27;ReadPosRankSum=1.708;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3398,372,0 chrVII 942238 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2795;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.42;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3195,348,0 chrVII 942898 . T C 5131.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.3608;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.47;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5131,594,0 chrVII 943671 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0758;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.09;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3856,429,0 chrVII 943691 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=3.163;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.203;QD=19.44;ReadPosRankSum=1.684;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2891,336,0 chrVII 943708 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.82;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3290,360,0 chrVII 943775 . G C 3568.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.5303;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.04;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3568,405,0 chrVII 943786 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.06;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3316,381,0 chrVII 943810 . C T 2897 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.69;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2930,333,0 chrVII 943831 . G T 2781 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.06;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2814,312,0 chrVII 943873 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=170;Dels=0.00;FS=6.021;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.054;QD=20.95;ReadPosRankSum=2.947;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3562,408,0 chrVII 944010 . A T 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=3.024;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.686;QD=24.67;ReadPosRankSum=2.404;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3972,432,0 chrVII 944106 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.18;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3410,375,0 chrVII 944287 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=149;Dels=0.00;FS=6.595;HaplotypeScore=7.3480;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.107;QD=22.09;ReadPosRankSum=2.417;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3291,372,0 chrVII 944466 . C A 2676 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.93;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2709,300,0 chrVII 944554 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.00;FS=3.027;HaplotypeScore=12.3973;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.042;QD=22.22;ReadPosRankSum=2.416;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3311,384,0 chrVII 944684 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.20;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1991,228,0 chrVII 944701 . A T 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3928;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.072;QD=17.61;ReadPosRankSum=1.444;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1759,192,0 chrVII 944738 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.874;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.477;QD=20.94;ReadPosRankSum=1.704;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2588,300,0 chrVII 944981 . T A 1874 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.34;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1907,207,0 chrVII 945026 . A G 1707 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.62;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1740,201,0 chrVII 945036 . T A 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.877;QD=19.31;ReadPosRankSum=1.647;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1597,174,0 chrVII 945166 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2043,231,0 chrVII 945207 . G T 2239 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.62;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2272,258,0 chrVII 945752 . A G 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.806;DP=187;Dels=0.00;FS=15.773;HaplotypeScore=11.7952;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.893;QD=20.49;ReadPosRankSum=3.772;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:5,181:187:99:3831,453,0 chrVII 945978 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.47;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3426,375,0 chrVII 946206 . T C 1809 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.28;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1842,213,0 chrVII 946366 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.67;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1823,198,0 chrVII 946369 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.58;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1854,204,0 chrVII 946497 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.0138;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2925,321,0 chrVII 946664 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.4831;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.90;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3832,432,0 chrVII 946974 . A G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.406;QD=22.44;ReadPosRankSum=1.643;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2659,303,0 chrVII 947080 . T C 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=83;Dels=0.00;FS=11.862;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-0.451;QD=20.71;ReadPosRankSum=2.842;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1752,198,0 chrVII 947085 . A G 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=2.984;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-1.354;QD=20.07;ReadPosRankSum=2.267;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1659,192,0 chrVII 947127 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=42.5732;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=0.40;SB=-7.168e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:6:54,6,0 chrVII 947252 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.34;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2178,240,0 chrVII 947600 . A G 1960 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.06;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1993,234,0 chrVII 947885 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.53;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2376,267,0 chrVII 948145 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.53;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3897,435,0 chrVII 948202 . T G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.396;QD=21.96;ReadPosRankSum=1.650;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2822,324,0 chrVII 949014 . T C 1963 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.88;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1996,228,0 chrVII 949072 . C T 679 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.76;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:712,81,0 chrVII 949432 . C G 2557 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2590,294,0 chrVII 949462 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.044;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.393;QD=20.66;ReadPosRankSum=3.127;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:4,123:127:99:2657,303,0 chrVII 949472 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.6546;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.81;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2925,336,0 chrVII 949496 . G T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.97;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3375,381,0 chrVII 949940 . A G 4034.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.41;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4034,459,0 chrVII 950132 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=3.104;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.682;QD=21.49;ReadPosRankSum=1.714;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4040,447,0 chrVII 950138 . C G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.04;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3913,438,0 chrVII 950156 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.23;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4389,504,0 chrVII 950426 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.07;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3995,447,0 chrVII 950639 . G A 4587.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.1027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4587,507,0 chrVII 950926 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2618,294,0 chrVII 951099 . A C 2005 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2038,234,0 chrVII 951384 . A G 2448 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=23.77;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2481,285,0 chrVII 951468 . G T 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=-0.441;QD=23.72;ReadPosRankSum=0.567;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2666,309,0 chrVII 951500 . G C 2392 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=23.45;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2425,288,0 chrVII 951537 . A G 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;MQRankSum=-1.696;QD=21.46;ReadPosRankSum=1.586;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2072,251,0 chrVII 951544 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=20.49;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1857,222,0 chrVII 951566 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;QD=20.17;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1788,207,0 chrVII 951573 . T A 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=6.938;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;MQRankSum=0.165;QD=19.37;ReadPosRankSum=1.691;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1660,192,0 chrVII 951595 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=20.07;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1739,198,0 chrVII 951635 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.9359;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;QD=19.23;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1687,189,0 chrVII 951655 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=0;QD=15.93;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1483,171,0 chrVII 951659 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=16.23;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1494,171,0 chrVII 951675 . A G 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;MQRankSum=-2.397;QD=13.44;ReadPosRankSum=2.397;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1283,153,0 chrVII 951689 . A G 1143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;MQRankSum=-1.732;QD=12.84;ReadPosRankSum=1.693;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1176,138,0 chrVII 951690 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=0;QD=13.17;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1192,138,0 chrVII 951700 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;QD=12.71;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1190,138,0 chrVII 951752 . G A 492 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=7.69;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:63:525,63,0 chrVII 951758 . C T 449 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;QD=7.61;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:57:482,57,0 chrVII 951773 . C T 429 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=8.58;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:54:462,54,0 chrVII 951785 . C T 454 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=0;QD=10.09;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:487,57,0 chrVII 951845 . A C 927 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.0007;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=12.36;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:960,117,0 chrVII 951926 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=119;Dels=0.00;FS=4.075;HaplotypeScore=11.7573;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=0.226;QD=23.16;ReadPosRankSum=1.702;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,114:119:99:2789,321,0 chrVII 951976 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=23.66;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2659,294,0 chrVII 952025 . T G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;MQRankSum=-0.013;QD=22.29;ReadPosRankSum=1.678;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2909,342,0 chrVII 952043 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=21.69;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2831,324,0 chrVII 952051 . T G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=132;Dels=0.00;FS=3.034;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;MQRankSum=0.196;QD=19.88;ReadPosRankSum=2.357;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2657,312,0 chrVII 952076 . A G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;MQRankSum=-1.137;QD=18.55;ReadPosRankSum=1.706;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2556,300,0 chrVII 952100 . A C 2449 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=19.13;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2482,291,0 chrVII 952133 . G T 2711 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.54;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2744,312,0 chrVII 952261 . T A 2518 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=20.14;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2551,285,0 chrVII 952285 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=17.27;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1967,222,0 chrVII 952286 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=16.76;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1877,219,0 chrVII 952297 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=112;Dels=0.00;FS=7.597;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;MQRankSum=-2.076;QD=14.79;ReadPosRankSum=2.406;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1690,198,0 chrVII 952318 . G A 1675 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=14.44;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1708,195,0 chrVII 952426 . A G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.367;QD=19.55;ReadPosRankSum=1.706;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2633,303,0 chrVII 952472 . T C 2696 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0583;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.66;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2729,309,0 chrVII 952505 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.79;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2882,327,0 chrVII 952947 . G A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.4252;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.83;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3623,411,0 chrVII 953031 . C T 4932.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.5905;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.06;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4932,549,0 chrVII 953335 . C A 2594 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.36;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2627,297,0 chrVII 953343 . T C 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=137;Dels=0.00;FS=3.563;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.310;QD=18.38;ReadPosRankSum=1.655;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:2551,288,0 chrVII 953555 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.659;QD=21.50;ReadPosRankSum=1.708;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3108,354,0 chrVII 953629 . A C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.74;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3917,453,0 chrVII 953718 . G T 3197 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.7528;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.17;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3230,360,0 chrVII 953865 . G A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.99;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3821,426,0 chrVII 953935 . T C 3022 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.59;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3055,357,0 chrVII 954007 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.15;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3278,366,0 chrVII 954301 . A G 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8918;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.999;QD=21.00;ReadPosRankSum=1.699;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2217,258,0 chrVII 954455 . G C 2649 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.64;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2682,306,0 chrVII 954667 . C G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.66;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3648,417,0 chrVII 954701 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.93;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3291,363,0 chrVII 954734 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.05;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2678,300,0 chrVII 955004 . T C 2364 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2397,273,0 chrVII 955260 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.4120;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.48;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3354,363,0 chrVII 955308 . G C 3399.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.81;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3399,384,0 chrVII 955379 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.80;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2490,273,0 chrVII 955387 . A G 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=139;Dels=0.00;FS=3.443;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.266;QD=17.73;ReadPosRankSum=1.682;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2498,285,0 chrVII 955481 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.44;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3455,378,0 chrVII 955499 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=149;Dels=0.00;FS=2.906;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.320;QD=19.93;ReadPosRankSum=2.234;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3003,342,0 chrVII 955592 . A T 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.732;QD=23.56;ReadPosRankSum=1.683;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3346,363,0 chrVII 955631 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=138;Dels=0.00;FS=2.940;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.911;QD=21.51;ReadPosRankSum=2.414;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3001,345,0 chrVII 955670 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.173;QD=22.82;ReadPosRankSum=1.683;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3250,369,0 chrVII 955942 . T C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=4.199;HaplotypeScore=11.3353;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.488;QD=20.39;ReadPosRankSum=1.708;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2949,333,0 chrVII 955988 . T C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=4.838;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.727;QD=21.48;ReadPosRankSum=1.653;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,130:134:99:2911,327,0 chrVII 956057 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2696,309,0 chrVII 956978 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=3.099;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.732;QD=21.02;ReadPosRankSum=1.686;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3186,366,0 chrVII 957479 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.31;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:947,108,0 chrVII 958235 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.44;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2030,225,0 chrVII 958287 . A T 2719 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.72;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2752,300,0 chrVII 958339 . A T 2497 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.0810;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.34;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2530,282,0 chrVII 958479 . A G 3677.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.27;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3677,426,0 chrVII 958516 . T C 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.379;QD=23.65;ReadPosRankSum=2.421;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4067,459,0 chrVII 958592 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.65;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4529,516,0 chrVII 958623 . A C 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.206;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-1.694;QD=21.66;ReadPosRankSum=1.694;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3963,465,0 chrVII 958749 . C G 4221.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.10;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4221,474,0 chrVII 958930 . T G 1962 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.65;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1995,228,0 chrVII 958955 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.32;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2058,228,0 chrVII 959157 . C G 2864 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.55;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2897,327,0 chrVII 959166 . C A 2878 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.5058;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.84;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2911,318,0 chrVII 959305 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.80;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3420,378,0 chrVII 959381 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.870;HaplotypeScore=14.9018;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.266;QD=18.85;ReadPosRankSum=2.377;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2596,297,0 chrVII 959587 . G C 1264 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.32;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1297,144,0 chrVII 959836 . T G 760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.609;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.184;QD=19.49;ReadPosRankSum=2.662;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:3,36:39:90:793,90,0 chrVII 959852 . T C 1040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.121;QD=20.39;ReadPosRankSum=1.664;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1073,123,0 chrVII 959945 . T C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.601;QD=22.58;ReadPosRankSum=1.699;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2426,282,0 chrVII 960299 . C A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.5731;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.31;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3961,450,0 chrVII 960362 . C A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.93;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3577,393,0 chrVII 960456 . A G 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=136;Dels=0.00;FS=6.015;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.548;QD=21.18;ReadPosRankSum=2.919;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2913,342,0 chrVII 960936 . A G 4603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=194;Dels=0.00;FS=6.060;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.162;QD=23.73;ReadPosRankSum=2.964;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4603,525,0 chrVII 961037 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=3.011;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.238;QD=21.07;ReadPosRankSum=2.368;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3193,366,0 chrVII 961146 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.86;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2745,309,0 chrVII 961203 . A T 2271 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.49;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2304,255,0 chrVII 961221 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.84;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2697,309,0 chrVII 961398 . T C 2710 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.51;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2743,312,0 chrVII 961585 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4459,495,0 chrVII 961690 . C G 3720.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3720,432,0 chrVII 961818 . C T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.26;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4074,450,0 chrVII 962062 . T A 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=164;Dels=0.00;FS=4.514;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.359;QD=23.10;ReadPosRankSum=1.711;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3789,426,0 chrVII 962110 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.50;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3846,420,0 chrVII 962130 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.39;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3830,423,0 chrVII 962346 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.466;QD=22.96;ReadPosRankSum=1.708;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3375,381,0 chrVII 962434 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.8273;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.389;QD=24.20;ReadPosRankSum=1.709;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3558,408,0 chrVII 962647 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=3.206;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.685;QD=20.43;ReadPosRankSum=1.694;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3719,432,0 chrVII 962886 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3383,390,0 chrVII 963014 . T A 2075 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.39;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2108,231,0 chrVII 963268 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.54;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2896,318,0 chrVII 963377 . G T 4347.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4347,477,0 chrVII 963517 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.5936;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.93;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3475,393,0 chrVII 963622 . G C 5680.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=15.9570;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.27;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5680,657,0 chrVII 963805 . C T 4631.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.1661;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.64;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4631,516,0 chrVII 963897 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=3.542;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.249;QD=23.45;ReadPosRankSum=1.711;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3869,438,0 chrVII 963916 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.21;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3909,432,0 chrVII 964024 . C G 2865 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.32;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2898,336,0 chrVII 964040 . C G 2841 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.74;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2874,321,0 chrVII 964048 . C G 2586 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.60;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2619,303,0 chrVII 964135 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.415;QD=21.16;ReadPosRankSum=1.703;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2593,294,0 chrVII 964180 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.57;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2666,300,0 chrVII 964201 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.69;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2788,309,0 chrVII 964269 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.145;DP=129;Dels=0.00;FS=9.159;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.971;QD=20.71;ReadPosRankSum=3.281;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2705,312,0 chrVII 964319 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.09;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3242,357,0 chrVII 964391 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.37;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4019,444,0 chrVII 964575 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.98;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3999,456,0 chrVII 964700 . G T 2979 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.99;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3012,342,0 chrVII 964714 . A G 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=137;Dels=0.00;FS=2.573;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-0.533;QD=19.16;ReadPosRankSum=2.845;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2658,309,0 chrVII 964744 . T G 2233 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.86;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2266,261,0 chrVII 964750 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=16.90;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2196,249,0 chrVII 964879 . A G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.629;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.579;QD=23.02;ReadPosRankSum=1.640;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2657,306,0 chrVII 964977 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.072;QD=22.70;ReadPosRankSum=1.703;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2802,315,0 chrVII 965433 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.08;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3370,369,0 chrVII 965476 . A T 3006 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.78;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3039,336,0 chrVII 965676 . T G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=88;Dels=0.00;FS=3.166;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.528;QD=20.61;ReadPosRankSum=1.610;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,84:88:99:1847,213,0 chrVII 965717 . C A 2290 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.61;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2323,255,0 chrVII 965888 . C T 1119 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.34;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1152,132,0 chrVII 965972 . G A 543 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.51;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:576,69,0 chrVII 966356 . G C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3821;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.43;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3247,369,0 chrVII 966466 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.346;QD=20.23;ReadPosRankSum=1.679;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2663,309,0 chrVII 966739 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2443,279,0 chrVII 966822 . T A 1442 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1475,168,0 chrVII 966950 . G C 1789 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.94;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1822,204,0 chrVII 967106 . T C 2195 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2228,255,0 chrVII 967359 . G A 2226 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.95;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2259,255,0 chrVII 967399 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.4170;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.43;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2891,315,0 chrVII 967596 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.666;QD=23.10;ReadPosRankSum=1.666;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3627,414,0 chrVII 967662 . C T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.8571;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.57;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4408,486,0 chrVII 967708 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.5209;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.65;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3213,351,0 chrVII 967722 . T A 3037 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.59;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3070,339,0 chrVII 967869 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.27;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3011,333,0 chrVII 968127 . T A 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.261;HaplotypeScore=13.3952;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.651;QD=22.27;ReadPosRankSum=1.704;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2817,312,0 chrVII 968214 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.19;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3548,414,0 chrVII 968274 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.402;QD=21.54;ReadPosRankSum=1.670;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2445,279,0 chrVII 968395 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=190;Dels=0.00;FS=4.771;HaplotypeScore=13.3118;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.127;QD=20.89;ReadPosRankSum=1.677;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3969,447,0 chrVII 968486 . T C 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.6529;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=1.155;QD=22.98;ReadPosRankSum=1.672;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4022,459,0 chrVII 968708 . G T 3054 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=19.09;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3087,333,0 chrVII 968737 . T A 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=6.227;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.929;QD=16.12;ReadPosRankSum=1.640;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2467,276,0 chrVII 968764 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=14.36;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1957,219,0 chrVII 968811 . A G 2844 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.07;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2877,327,0 chrVII 969304 . T C 3156 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.92;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3189,366,0 chrVII 969339 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=150;Dels=0.00;FS=3.024;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.794;QD=20.83;ReadPosRankSum=2.383;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:3158,357,0 chrVII 969533 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.71;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3702,411,0 chrVII 969608 . C A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.44;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3577,408,0 chrVII 969615 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=171;Dels=0.00;FS=6.094;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.582;QD=19.68;ReadPosRankSum=2.888;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3366,381,0 chrVII 969646 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.10;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3558,387,0 chrVII 969745 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.57;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4314,474,0 chrVII 969753 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=206;Dels=0.00;FS=9.967;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.559;QD=18.82;ReadPosRankSum=2.926;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:3876,438,0 chrVII 969826 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.6857;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.11;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3758,411,0 chrVII 969927 . C T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.5045;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.09;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3949,444,0 chrVII 970003 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.41;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3652,399,0 chrVII 970084 . A G 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.144;QD=19.16;ReadPosRankSum=1.674;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2332,270,0 chrVII 970088 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.98;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2510,285,0 chrVII 970143 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=7.611;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.238;QD=20.27;ReadPosRankSum=2.392;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2648,306,0 chrVII 970290 . A T 3093 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.09;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3126,345,0 chrVII 970357 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.93;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3852,435,0 chrVII 970433 . A G 1944 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1977,228,0 chrVII 970512 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.26;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2815,315,0 chrVII 970527 . A T 2519 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.17;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2552,294,0 chrVII 970797 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.10;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3464,381,0 chrVII 971296 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.5538;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.15;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4050,459,0 chrVII 971305 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=191;Dels=0.00;FS=2.904;HaplotypeScore=6.6858;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.379;QD=19.42;ReadPosRankSum=2.334;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3709,423,0 chrVII 971377 . T G 4142.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.03;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4142,486,0 chrVII 971401 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=200;Dels=0.00;FS=10.780;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-2.151;QD=21.95;ReadPosRankSum=2.955;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4389,507,0 chrVII 971467 . C G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.50;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3342,387,0 chrVII 971479 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.32;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3390,375,0 chrVII 971511 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.72;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3545,393,0 chrVII 971719 . C T 4693.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.23;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4693,531,0 chrVII 971746 . C T 5241.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.0107;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.11;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5241,585,0 chrVII 971887 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.69;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4425,492,0 chrVII 972322 . T C 4712.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=21.5318;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.02;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4712,537,0 chrVII 972898 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=3.979;HaplotypeScore=10.1057;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.231;QD=21.82;ReadPosRankSum=1.636;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3927,450,0 chrVII 972982 . G A 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=168;Dels=0.00;FS=3.456;HaplotypeScore=15.7130;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.401;QD=17.76;ReadPosRankSum=0.824;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,163:168:99:3017,345,0 chrVII 973057 . G A 5042.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.67;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5042,561,0 chrVII 973107 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.96;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3453,387,0 chrVII 973111 . A G 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=172;Dels=0.00;FS=8.026;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=1.062;QD=18.34;ReadPosRankSum=3.287;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:3188,369,0 chrVII 973354 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.6800;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.52;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3529,402,0 chrVII 974145 . A G 544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=37;Dels=0.00;FS=2.915;HaplotypeScore=34.6390;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;MQRankSum=-2.244;QD=14.70;ReadPosRankSum=2.244;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:2,34:37:66:577,66,0 chrVII 974211 . C G 1386 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.1578;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.77;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1419,168,0 chrVII 974241 . T C 2134 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.02;FS=0.000;HaplotypeScore=13.2763;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.76;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2167,252,0 chrVII 974385 . T A 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.456;QD=21.75;ReadPosRankSum=1.580;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2513,291,0 chrVII 974457 . A T 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.256;QD=20.68;ReadPosRankSum=2.395;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2845,315,0 chrVII 974639 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2226,246,0 chrVII 974684 . A T 2505 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2538,288,0 chrVII 975047 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.6087;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.62;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3727,420,0 chrVII 975265 . A C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.51;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3302,378,0 chrVII 975463 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.18;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3549,384,0 chrVII 975497 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=4.895;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.220;QD=19.48;ReadPosRankSum=1.708;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2818,330,0 chrVII 975499 . T A 2966 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.74;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2999,330,0 chrVII 975632 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=10.5425;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.41;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2886,318,0 chrVII 975692 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.15;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2868,315,0 chrVII 975940 . T G 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=122;Dels=0.00;FS=3.194;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.587;QD=22.34;ReadPosRankSum=1.675;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2759,299,0 chrVII 976015 . T C 3133 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.8969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3166,366,0 chrVII 976100 . G A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.72;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4339,474,0 chrVII 976137 . G A 5269.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.52;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5269,582,0 chrVII 976297 . A G 6475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=287;Dels=0.00;FS=3.277;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.067;QD=22.56;ReadPosRankSum=1.683;SB=-3.465e+03 GT:AD:DP:GQ:PL 1/1:1,284:287:99:6475,744,0 chrVII 976327 . A G 6346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=288;Dels=0.00;FS=8.656;HaplotypeScore=15.0589;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.240;QD=22.03;ReadPosRankSum=3.328;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:4,283:288:99:6346,732,0 chrVII 976713 . T C 1703 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1736,201,0 chrVII 976931 . T C 1861 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.01;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1894,219,0 chrVII 977112 . C G 1130 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=12.42;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1163,132,0 chrVII 977122 . C T 1154 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=13.26;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1187,135,0 chrVII 977277 . T C 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.282;QD=21.07;ReadPosRankSum=1.697;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2182,249,0 chrVII 977494 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.512;QD=21.50;ReadPosRankSum=1.705;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2807,324,0 chrVII 977855 . A T 625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.408;QD=18.38;ReadPosRankSum=1.631;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:72:658,72,0 chrVII 977933 . T A 329 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.578;QD=18.28;ReadPosRankSum=1.542;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:42:362,42,0 chrVII 977989 . A G 977 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.20;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1010,114,0 chrVII 978531 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=209;Dels=0.00;FS=5.703;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.155;QD=21.66;ReadPosRankSum=2.966;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:4527,525,0 chrVII 978858 . T C 2832 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.12;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2865,330,0 chrVII 979414 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=23.48;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3592,390,0 chrVII 979545 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.577;QD=21.70;ReadPosRankSum=1.702;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2507,285,0 chrVII 979683 . A C 3133 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.70;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3166,366,0 chrVII 980911 . A G 2803 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=17.5636;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.02;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2836,327,0 chrVII 981100 . A G 2015 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7799;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.14;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2048,231,0 chrVII 981478 . A G 2155 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.99;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2188,252,0 chrVII 981937 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=20.9621;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.78;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4135,471,0 chrVII 982079 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2079;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=20.59;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2710,291,0 chrVII 982087 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=19.53;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2591,282,0 chrVII 982112 . C T 2194 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.50;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2227,243,0 chrVII 982276 . G A 625 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=54.2196;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=9.33;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:75:658,75,0 chrVII 982310 . A T 1411 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.42;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1444,162,0 chrVII 982548 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.58;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4599,525,0 chrVII 982687 . C T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.4322;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.87;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4311,468,0 chrVII 983061 . G C 3082 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.1728;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=17.03;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3115,363,0 chrVII 983091 . G C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=15.09;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3274,375,0 chrVII 983112 . G A 2991 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=14.59;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3024,333,0 chrVII 983114 . T C 2795 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=0;MQRankSum=-1.149;QD=13.84;ReadPosRankSum=1.681;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:2828,324,0 chrVII 983122 . G C 2261 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.6392;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=13.38;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2294,261,0 chrVII 983124 . A T 2325 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.6414;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;QD=13.60;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2358,261,0 chrVII 983125 . A G 2254 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.579;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;MQRankSum=0.760;QD=13.10;ReadPosRankSum=0.719;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:2287,261,0 chrVII 983126 . C T 2365 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;QD=13.67;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2398,261,0 chrVII 983164 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=13.80;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1938,210,0 chrVII 983358 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=19.65;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2627,297,0 chrVII 983588 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.29;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3354,369,0 chrVII 983817 . C T 4454.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.7316;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.32;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4454,504,0 chrVII 983973 . G A 4721.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.7543;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.81;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4721,537,0 chrVII 984084 . A G 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=221;Dels=0.00;FS=5.789;HaplotypeScore=25.1831;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.069;QD=21.68;ReadPosRankSum=2.968;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:3,216:221:99:4792,540,0 chrVII 984165 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.173;QD=20.48;ReadPosRankSum=1.674;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3686,420,0 chrVII 984195 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=4.226;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.047;QD=20.52;ReadPosRankSum=1.712;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3530,396,0 chrVII 984362 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.21;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3504,378,0 chrVII 984558 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=104;Dels=0.00;FS=14.552;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.853;QD=19.29;ReadPosRankSum=3.250;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:4,98:104:99:2039,234,0 chrVII 984559 . A T 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.566;QD=20.32;ReadPosRankSum=1.629;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2126,237,0 chrVII 984603 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.37;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2478,279,0 chrVII 984677 . A G 2079 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2112,240,0 chrVII 984935 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.01;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3456,396,0 chrVII 984961 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8341;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.70;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3689,402,0 chrVII 985050 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.23;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4895,552,0 chrVII 985136 . C T 6165.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=18.2010;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.26;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:0,261:265:99:6165,670,0 chrVII 985175 . A G 6085.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.81;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:6085,716,0 chrVII 985210 . T C 5961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.736;DP=276;Dels=0.00;FS=12.202;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.437;QD=21.60;ReadPosRankSum=3.736;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:5,268:276:99:5961,681,0 chrVII 985232 . T C 5787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=275;Dels=0.00;FS=13.533;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.415;QD=21.04;ReadPosRankSum=3.385;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:4,271:275:99:5787,654,0 chrVII 985352 . G A 4926.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.0639;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.70;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4926,540,0 chrVII 985412 . T G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=217;Dels=0.00;FS=4.509;HaplotypeScore=22.4982;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.704;QD=16.82;ReadPosRankSum=1.715;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,209:217:99:3649,423,0 chrVII 985520 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=23.08;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3370,369,0 chrVII 985524 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.66;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3206,360,0 chrVII 985797 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.09;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1310,144,0 chrVII 985817 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.04;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1403,165,0 chrVII 985834 . T A 984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.137;QD=15.62;ReadPosRankSum=2.372;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1017,117,0 chrVII 986049 . A C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=4.678;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.280;QD=23.05;ReadPosRankSum=1.657;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3214,369,0 chrVII 986380 . A T 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.1331;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.726;QD=21.85;ReadPosRankSum=1.716;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4589,507,0 chrVII 986601 . T C 4391.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.75;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4391,495,0 chrVII 986604 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.545;QD=22.88;ReadPosRankSum=1.713;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4232,477,0 chrVII 986764 . G T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.76;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3360,375,0 chrVII 986874 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.21;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2676,294,0 chrVII 986883 . G A 2494 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.28;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2527,276,0 chrVII 987032 . C A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9271;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=25.06;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3283,354,0 chrVII 987204 . T G 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.656;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.268;QD=18.55;ReadPosRankSum=1.704;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2315,267,0 chrVII 987223 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.98;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2226,246,0 chrVII 987228 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.23;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2245,240,0 chrVII 987273 . A G 1431 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=15.39;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1464,168,0 chrVII 987315 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=64.5777;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=14.32;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1121,126,0 chrVII 987319 . A T 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=70.2127;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;MQRankSum=-0.753;QD=13.83;ReadPosRankSum=0.785;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1112,123,0 chrVII 987417 . T C 2027 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.77;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2060,237,0 chrVII 987450 . T C 2453 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0841;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.71;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2486,282,0 chrVII 987489 . A G 1830 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=20.11;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1863,213,0 chrVII 987590 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=18.92;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2663,291,0 chrVII 987595 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.28;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2775,303,0 chrVII 987674 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4761;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=21.17;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2531,276,0 chrVII 987713 . A G 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=0.235;QD=24.69;ReadPosRankSum=1.689;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:2033,228,0 chrVII 987788 . T G 917 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.9969;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=18.71;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:950,108,0 chrVII 987829 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.53;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1256,141,0 chrVII 987893 . C T 728 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=15.17;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:87:761,87,0 chrVII 987900 . T G 624 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=14.86;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:78:657,78,0 chrVII 987926 . G A 435 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.12;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:54:468,54,0 chrVII 987961 . A G 910 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=18.57;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:943,108,0 chrVII 987973 . G A 1009 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.69;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1042,114,0 chrVII 987979 . C T 1094 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.86;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1127,120,0 chrVII 988018 . A G 985 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.28;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1018,117,0 chrVII 988108 . T C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.592;QD=23.99;ReadPosRankSum=1.697;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2408,279,0 chrVII 988162 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.61;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3063,357,0 chrVII 988195 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=143;Dels=0.00;FS=2.756;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.521;QD=22.47;ReadPosRankSum=2.398;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3246,369,0 chrVII 988333 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.21;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3458,381,0 chrVII 988432 . T C 3981.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3981,459,0 chrVII 988550 . C T 4163.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.79;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4163,474,0 chrVII 988609 . T C 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.589;QD=22.28;ReadPosRankSum=1.715;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,199:203:99:4523,522,0 chrVII 988732 . T G 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=23.6837;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.404;QD=20.57;ReadPosRankSum=1.714;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4012,459,0 chrVII 988808 . G C 3887.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.28;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:3887,450,0 chrVII 988813 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=227;Dels=0.00;FS=10.191;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.287;QD=16.58;ReadPosRankSum=2.969;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:3,221:227:99:3764,441,0 chrVII 988846 . C A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=17.90;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3563,396,0 chrVII 988930 . A G 2261 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=177;Dels=0.00;FS=5.912;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;MQRankSum=-1.381;QD=12.77;ReadPosRankSum=2.960;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:2294,267,0 chrVII 988931 . G A 2312 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=13.21;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2345,261,0 chrVII 988933 . C T 2430 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=13.73;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2463,270,0 chrVII 988962 . T C 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=171;Dels=0.00;FS=8.444;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-1.113;QD=13.85;ReadPosRankSum=2.335;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:2401,273,0 chrVII 989039 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.11;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3780,417,0 chrVII 989178 . C A 3196 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.99;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3229,357,0 chrVII 989203 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.367;QD=21.56;ReadPosRankSum=1.706;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2943,336,0 chrVII 989297 . C T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.22;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4227,480,0 chrVII 989305 . T C 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.671;DP=226;Dels=0.00;FS=4.403;HaplotypeScore=7.4602;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-1.134;QD=18.86;ReadPosRankSum=1.717;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4263,463,0 chrVII 989344 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.53;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:3945,447,0 chrVII 989383 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.31;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3798,417,0 chrVII 989564 . C G 2779 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.74;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,130:134:99:2812,321,0 chrVII 989918 . T C 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.017;QD=21.95;ReadPosRankSum=1.619;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2052,237,0 chrVII 989982 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5336;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.239;QD=21.38;ReadPosRankSum=2.372;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,124:129:99:2791,321,0 chrVII 990540 . A C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.533;QD=21.47;ReadPosRankSum=1.619;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2674,312,0 chrVII 990823 . T C 2616 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.57;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2649,300,0 chrVII 990841 . C A 2874 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.75;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2907,324,0 chrVII 990971 . A T 1527 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.46;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1560,177,0 chrVII 991010 . G A 1483 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.32;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1516,165,0 chrVII 991027 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.84;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1407,162,0 chrVII 991126 . T A 1719 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1752,192,0 chrVII 991689 . T C 2949 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.34;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2982,342,0 chrVII 991695 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.39;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3006,324,0 chrVII 991740 . C G 3554.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.74;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3554,405,0 chrVII 991971 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.82;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4040,444,0 chrVII 992004 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.697;QD=21.19;ReadPosRankSum=2.418;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3369,390,0 chrVII 992313 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3423,375,0 chrVII 992448 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.150;QD=20.95;ReadPosRankSum=1.512;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3624,408,0 chrVII 992475 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.62;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3372,375,0 chrVII 992799 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.92;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3782,423,0 chrVII 992889 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3736,426,0 chrVII 993196 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.47;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2996,324,0 chrVII 993243 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.9350;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.17;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3282,363,0 chrVII 993308 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.15;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2794,315,0 chrVII 993694 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=72;Dels=0.00;FS=4.137;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.584;QD=20.86;ReadPosRankSum=1.683;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,69:72:99:1535,174,0 chrVII 993765 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.08;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1780,204,0 chrVII 993774 . A G 1742 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.24;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1775,201,0 chrVII 993849 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2006,213,0 chrVII 994015 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.13;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2777,312,0 chrVII 994097 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.410;QD=22.03;ReadPosRankSum=1.633;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3117,351,0 chrVII 994263 . C A 2657 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.98;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2690,297,0 chrVII 994272 . C T 2703 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.17;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2736,297,0 chrVII 994410 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.907;QD=19.02;ReadPosRankSum=1.685;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2829,327,0 chrVII 994464 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=21.25;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2626,291,0 chrVII 994491 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=22.14;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2668,297,0 chrVII 994520 . C G 2302 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=20.02;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2335,270,0 chrVII 994545 . G T 2254 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.31;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2287,255,0 chrVII 994656 . T C 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;MQRankSum=0.873;QD=14.85;ReadPosRankSum=1.705;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1963,231,0 chrVII 994667 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=0;MQRankSum=-0.755;QD=13.68;ReadPosRankSum=1.703;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:1661,189,0 chrVII 994670 . T A 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;MQRankSum=-0.231;QD=13.85;ReadPosRankSum=1.703;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1695,189,0 chrVII 994685 . A G 1416 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=3.044;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;MQRankSum=0.526;QD=12.87;ReadPosRankSum=2.315;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1449,168,0 chrVII 994687 . T C 1429 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=6.061;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;MQRankSum=-1.868;QD=12.87;ReadPosRankSum=2.405;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1462,168,0 chrVII 994688 . T C 1413 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;QD=12.62;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1446,171,0 chrVII 994738 . C A 2327 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=17.50;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2360,267,0 chrVII 994826 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=21.85;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2436,267,0 chrVII 994977 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=17.74;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1665,192,0 chrVII 994986 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=16.31;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1599,177,0 chrVII 994995 . C T 1576 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=17.13;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1609,174,0 chrVII 994998 . C T 1377 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=16.59;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1410,162,0 chrVII 995000 . T C 1392 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=16.77;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1425,162,0 chrVII 995002 . C T 1420 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=16.71;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1453,162,0 chrVII 995040 . G A 1662 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=17.13;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1695,195,0 chrVII 995089 . A G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=5.396;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.196;QD=21.94;ReadPosRankSum=1.696;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2161,246,0 chrVII 995121 . G T 2334 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.31;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2367,261,0 chrVII 995158 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.03;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2038,237,0 chrVII 995212 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=23.36;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2346,255,0 chrVII 995225 . C A 2259 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.51;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2292,252,0 chrVII 995359 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=23.61;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3636,408,0 chrVII 995450 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.00;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3480,381,0 chrVII 995575 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.91;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3483,396,0 chrVII 995632 . G A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.27;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4654,531,0 chrVII 995719 . A C 3878.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.08;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3878,450,0 chrVII 995819 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=198;Dels=0.00;FS=2.991;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.863;QD=21.86;ReadPosRankSum=2.424;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4329,492,0 chrVII 996064 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.3806;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.28;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3119,351,0 chrVII 996604 . G T 2364 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.41;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2397,264,0 chrVII 997093 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2744,312,0 chrVII 997222 . T G 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=136;Dels=0.00;FS=3.043;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.789;QD=21.73;ReadPosRankSum=2.395;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2988,348,0 chrVII 997372 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2568,282,0 chrVII 997600 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=135;Dels=0.00;FS=3.002;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.173;QD=23.17;ReadPosRankSum=2.359;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3161,366,0 chrVII 997667 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.99;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2493,273,0 chrVII 997840 . A G 2684 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.13;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2717,312,0 chrVII 997972 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.39;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3359,378,0 chrVII 998377 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3000,333,0 chrVII 998751 . T C 6078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=265;Dels=0.00;FS=2.559;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.505;QD=22.94;ReadPosRankSum=2.385;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:6078,693,0 chrVII 999059 . A G 4697.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.42;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:4697,537,0 chrVII 999165 . G T 2541 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.49;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2574,282,0 chrVII 999229 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.487;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.430;QD=21.71;ReadPosRankSum=1.677;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2769,318,0 chrVII 999291 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.79;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2299,261,0 chrVII 999313 . A G 1712 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-1.732;QD=20.38;ReadPosRankSum=1.650;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1745,198,0 chrVII 999317 . A G 1609 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=2.926;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-1.059;QD=20.63;ReadPosRankSum=2.387;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1642,189,0 chrVII 999319 . G C 1666 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=21.36;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1699,192,0 chrVII 999392 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1703;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.31;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1089,117,0 chrVII 999433 . A G 1025 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1058,123,0 chrVII 999483 . G C 1080 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.04;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1113,132,0 chrVII 999528 . T C 682 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.73;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:81:715,81,0 chrVII 999559 . T A 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.370;DP=12;Dels=0.00;FS=2.932;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=0.185;QD=3.91;ReadPosRankSum=0.000;SB=-4.397e+01 GT:AD:DP:GQ:PL 1/1:3,9:12:9:79,9,0 chrVII 999604 . A G 661 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.03;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:84:694,84,0 chrVII 999629 . T G 739 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.97;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:93:772,93,0 chrVII 999647 . A G 790 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.56;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:93:823,93,0 chrVII 999668 . G C 835 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.7981;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=15.46;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:868,99,0 chrVII 999807 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=143;Dels=0.00;FS=4.894;HaplotypeScore=13.8753;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.276;QD=23.90;ReadPosRankSum=3.348;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:4,138:143:99:3418,390,0 chrVII 999896 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=136;Dels=0.00;FS=8.747;HaplotypeScore=12.3774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.600;QD=22.81;ReadPosRankSum=2.341;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3135,357,0 chrVII 1000147 . G A 5863.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.6921;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.95;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5863,634,0 chrVII 1000199 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.74;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3712,408,0 chrVII 1000204 . A T 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.711;QD=20.74;ReadPosRankSum=1.711;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3380,372,0 chrVII 1000433 . A G 2062 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=121;Dels=0.00;FS=7.554;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=-1.576;QD=17.04;ReadPosRankSum=2.368;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2095,240,0 chrVII 1000436 . G A 1985 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=16.68;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2018,234,0 chrVII 1000439 . C G 1972 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=16.57;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2005,231,0 chrVII 1000645 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=21.69;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3005,327,0 chrVII 1000648 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.172;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=-1.580;QD=19.90;ReadPosRankSum=1.682;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2759,324,0 chrVII 1000659 . T C 2697 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=19.83;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2730,309,0 chrVII 1000855 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.67;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4001,441,0 chrVII 1001436 . T C 1486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=198;Dels=0.00;FS=12.477;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=19.90;MQ0=44;MQRankSum=-0.758;QD=7.51;ReadPosRankSum=2.418;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:3,195:198:99:1519,177,0 chrVII 1001475 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=158;Dels=0.00;FS=28.735;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.41;MQ0=38;MQRankSum=-3.354;QD=0.13;ReadPosRankSum=3.384;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,153:158:6:51,6,0 chrVII 1001476 . T A 43.97 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.61;MQ0=38;QD=0.28;SB=-2.821e+01 GT:AD:DP:GQ:PL 1/1:0,159:159:9:76,9,0 chrVII 1001631 . T C 4474.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.788;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.1641;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=20;MQRankSum=0.030;QD=19.97;ReadPosRankSum=1.932;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4474,499,0 chrVII 1001770 . T A 5699.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=260;Dels=0.00;FS=3.789;HaplotypeScore=20.0538;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=4;MQRankSum=-0.474;QD=21.92;ReadPosRankSum=1.719;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:5699,633,0 chrVII 1001922 . T C 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=205;Dels=0.00;FS=3.411;HaplotypeScore=13.2539;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.102;QD=20.13;ReadPosRankSum=1.715;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4126,477,0 chrVII 1002499 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.54;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1647,189,0 chrVII 1002500 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.79;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1670,183,0 chrVII 1002898 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.8131;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.69;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4765,525,0 chrVII 1002934 . A G 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=207;Dels=0.00;FS=6.430;HaplotypeScore=15.8967;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.706;QD=21.33;ReadPosRankSum=2.414;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4415,527,0 chrVII 1003128 . G C 3916.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9527;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.38;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3916,444,0 chrVII 1003201 . G C 3140 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4361;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.51;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3173,366,0 chrVII 1003324 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2672,288,0 chrVII 1003414 . T C 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=5.166;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.587;QD=21.52;ReadPosRankSum=1.672;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2551,291,0 chrVII 1003534 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.44;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2327,261,0 chrVII 1004173 . T C 2224 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=21.38;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2257,252,0 chrVII 1004183 . C G 2292 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.83;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2325,267,0 chrVII 1004378 . G A 915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.889;QD=19.47;ReadPosRankSum=2.343;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,44:47:99:948,105,0 chrVII 1004379 . A G 877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=47;Dels=0.00;FS=9.035;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-1.284;QD=18.66;ReadPosRankSum=2.851;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,44:47:99:910,105,0 chrVII 1004566 . G A 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9631;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.956;QD=21.86;ReadPosRankSum=0.119;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1323,128,0 chrVII 1005019 . C G 4530.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.54;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4530,510,0 chrVII 1005100 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4503;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.253;QD=19.07;ReadPosRankSum=1.671;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3299,375,0 chrVII 1005122 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.293;QD=16.86;ReadPosRankSum=1.713;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3153,366,0 chrVII 1005280 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.170;DP=181;Dels=0.00;FS=5.246;HaplotypeScore=14.6182;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.285;QD=18.71;ReadPosRankSum=2.166;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:3387,393,0 chrVII 1005292 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.51;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3493,384,0 chrVII 1005829 . T A 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.024;QD=22.61;ReadPosRankSum=1.680;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3040,339,0 chrVII 1005852 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0675;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.87;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3164,345,0 chrVII 1005907 . T G 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.163;QD=19.94;ReadPosRankSum=1.680;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2705,318,0 chrVII 1005941 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.65;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2393,264,0 chrVII 1006143 . C A 1804 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.22;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1837,201,0 chrVII 1006156 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.39;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1681,189,0 chrVII 1006262 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.87;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2811,321,0 chrVII 1006307 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.08;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2339,261,0 chrVII 1006351 . A G 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=130;Dels=0.00;FS=10.470;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-0.696;QD=16.12;ReadPosRankSum=2.412;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2129,243,0 chrVII 1006376 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.38;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2983,339,0 chrVII 1006715 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.47;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3416,375,0 chrVII 1006748 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.74;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3366,375,0 chrVII 1006778 . A T 2889 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.3818;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.35;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2922,330,0 chrVII 1006862 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.17;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2883,318,0 chrVII 1007272 . A G 5225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=247;Dels=0.00;FS=5.881;HaplotypeScore=14.2140;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.882;QD=21.15;ReadPosRankSum=2.955;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:3,243:247:99:5225,591,0 chrVII 1007947 . T C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=14.501;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.077;QD=21.60;ReadPosRankSum=2.402;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2301,264,0 chrVII 1008097 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=4.260;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.646;QD=20.86;ReadPosRankSum=1.689;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1702,195,0 chrVII 1008259 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.429;QD=21.89;ReadPosRankSum=1.698;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2288,261,0 chrVII 1008695 . A C 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=3.033;HaplotypeScore=8.1108;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.372;QD=22.87;ReadPosRankSum=2.416;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3362,372,0 chrVII 1008949 . T A 2200 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.9261;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.00;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2233,252,0 chrVII 1009018 . A G 2783 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0773;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.26;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2816,309,0 chrVII 1009086 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.82;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2612,294,0 chrVII 1009263 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=5.088;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.951;QD=19.80;ReadPosRankSum=1.708;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2845,327,0 chrVII 1009276 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.91;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2832,327,0 chrVII 1009315 . T C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0360;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.480;QD=16.82;ReadPosRankSum=1.711;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2809,327,0 chrVII 1009506 . A T 6083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=265;Dels=0.00;FS=3.441;HaplotypeScore=14.4105;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.150;QD=22.95;ReadPosRankSum=1.693;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:6083,666,0 chrVII 1009713 . C T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.95;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4469,486,0 chrVII 1009717 . C G 4023.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=18.04;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4023,465,0 chrVII 1009812 . A G 4506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=201;Dels=0.00;FS=2.984;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.389;QD=22.42;ReadPosRankSum=2.413;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4506,510,0 chrVII 1010365 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.46;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3279,363,0 chrVII 1010428 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4941;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.242;QD=21.89;ReadPosRankSum=1.701;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2507,288,0 chrVII 1010860 . G A 1186 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=8.6416;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=16.47;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1219,135,0 chrVII 1010934 . C G 878 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=13.72;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:911,102,0 chrVII 1011024 . G A 968 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.8519;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.62;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1001,111,0 chrVII 1011163 . C G 2024 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=18.57;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2057,225,0 chrVII 1011166 . C A 2125 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=19.50;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2158,234,0 chrVII 1011188 . G C 1998 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=15.86;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2031,231,0 chrVII 1011203 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=17.52;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2240,261,0 chrVII 1011474 . A C 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.283;QD=19.12;ReadPosRankSum=1.626;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1907,219,0 chrVII 1011503 . A G 1391 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=16.17;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1424,165,0 chrVII 1011510 . A G 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.231;QD=15.33;ReadPosRankSum=1.655;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1413,162,0 chrVII 1011792 . C T 688 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:81:721,81,0 chrVII 1012069 . T A 3013 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.22;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3046,333,0 chrVII 1012213 . T C 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.013;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=18.8607;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.699;QD=16.88;ReadPosRankSum=0.752;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,105:109:99:1873,216,0 chrVII 1012326 . C A 1650 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.15;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1683,192,0 chrVII 1012544 . A G 5549.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.8297;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.66;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5549,639,0 chrVII 1012661 . C T 6273.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.7849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-3.614e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6273,693,0 chrVII 1012781 . A G 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.621;DP=248;Dels=0.00;FS=7.952;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.090;QD=20.88;ReadPosRankSum=3.659;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:5,243:248:99:5179,591,0 chrVII 1012874 . C T 5537.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=17.2393;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.66;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5537,621,0 chrVII 1013000 . C G 4449.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.2877;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.09;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4449,507,0 chrVII 1013720 . C T 4736.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.24;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:4736,522,0 chrVII 1013788 . C A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.7924;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.89;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4783,528,0 chrVII 1013909 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.26;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3814,432,0 chrVII 1014095 . A G 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=93.3408;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.353;QD=20.50;ReadPosRankSum=1.636;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2247,252,0 chrVII 1014141 . T A 1525 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=20.0732;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.94;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1558,177,0 chrVII 1014179 . T A 810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.178;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.3047;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.693;QD=16.20;ReadPosRankSum=1.247;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:93:843,93,0 chrVII 1014216 . A G 807 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.34;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:840,96,0 chrVII 1014432 . G A 1767 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1800,207,0 chrVII 1014663 . C A 1935 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1968,213,0 chrVII 1014835 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.83;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2658,294,0 chrVII 1014918 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.89;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3234,363,0 chrVII 1015016 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.6094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.20;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3434,372,0 chrVII 1015147 . T G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.274;QD=21.38;ReadPosRankSum=1.630;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2941,342,0 chrVII 1015170 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.44;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2756,309,0 chrVII 1016165 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.51;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3233,354,0 chrVII 1016232 . G A 4895.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.4584;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.20;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4895,546,0 chrVII 1016394 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.42;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4014,459,0 chrVII 1016415 . G A 4333.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.05;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4333,480,0 chrVII 1016553 . T G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3661,420,0 chrVII 1016640 . A G 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.871;QD=20.43;ReadPosRankSum=2.253;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1565,177,0 chrVII 1016792 . A G 806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.589;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.588;QD=17.15;ReadPosRankSum=2.851;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:3,44:47:99:839,99,0 chrVII 1017034 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.387;QD=22.87;ReadPosRankSum=1.675;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2800,318,0 chrVII 1017661 . C T 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.773;QD=23.88;ReadPosRankSum=-0.086;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4466,463,0 chrVII 1018075 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.16;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2742,321,0 chrVII 1018767 . C A 2021 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.27;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2054,225,0 chrVII 1019116 . G C 2030 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.71;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2063,237,0 chrVII 1019203 . A G 2441 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.22;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2474,279,0 chrVII 1019210 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=142;Dels=0.00;FS=6.018;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.360;QD=17.10;ReadPosRankSum=2.921;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:2461,282,0 chrVII 1019595 . A G 2020 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.36;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2053,231,0 chrVII 1019597 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.36;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2201,237,0 chrVII 1019728 . T C 2620 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.39;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2653,306,0 chrVII 1019751 . C T 2806 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.42;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2839,312,0 chrVII 1019970 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.06;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3851,423,0 chrVII 1020978 . G A 5782.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=15.9765;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.67;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5782,654,0 chrVII 1021064 . A G 5332.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.9366;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.03;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5332,606,0 chrVII 1021077 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.0116;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.14;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4827,555,0 chrVII 1021490 . T C 3181 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.64;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3214,369,0 chrVII 1021557 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.86;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3531,402,0 chrVII 1021857 . T G 2789 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2822,318,0 chrVII 1022119 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.26;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1593,177,0 chrVII 1022181 . A T 1299 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=15.84;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1332,144,0 chrVII 1022196 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.93;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1557,174,0 chrVII 1022301 . A G 2501 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.53;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2534,279,0 chrVII 1022320 . G T 1901 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.01;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1934,210,0 chrVII 1022327 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.54;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1811,201,0 chrVII 1022387 . C G 1781 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.47;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1814,207,0 chrVII 1022413 . T C 2438 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.67;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2471,279,0 chrVII 1022470 . A T 3063 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.74;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3096,342,0 chrVII 1022499 . G T 2539 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.70;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2572,282,0 chrVII 1022816 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.71;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2054,231,0 chrVII 1023234 . A T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.66;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3768,420,0 chrVII 1023277 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3392,369,0 chrVII 1023633 . G A 5310.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.8050;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.09;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5310,585,0 chrVII 1023685 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.73;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4318,492,0 chrVII 1023965 . G C 2561 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=14.0425;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.89;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2594,303,0 chrVII 1024005 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.71;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3343,384,0 chrVII 1024185 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6838;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.12;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3979,432,0 chrVII 1024329 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=2.915;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.025;QD=19.25;ReadPosRankSum=2.399;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:2901,327,0 chrVII 1024337 . G C 2934 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.05;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2967,336,0 chrVII 1025033 . A G 2253 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=14.7648;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.12;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2286,264,0 chrVII 1025187 . G C 3008 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.45;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3041,351,0 chrVII 1025688 . C T 4785.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.17;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:4785,534,0 chrVII 1025709 . C T 4698.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.16;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4698,516,0 chrVII 1026465 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.1755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.40;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4452,492,0 chrVII 1027279 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=3.085;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.262;QD=22.41;ReadPosRankSum=1.713;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4012,456,0 chrVII 1027295 . G C 3993.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.08;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3993,456,0 chrVII 1027359 . G A 4092.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.36;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4092,459,0 chrVII 1027579 . T G 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.186;DP=178;Dels=0.00;FS=3.787;HaplotypeScore=5.1430;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.382;QD=22.83;ReadPosRankSum=-1.341;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4063,438,0 chrVII 1027604 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.487;QD=21.17;ReadPosRankSum=1.691;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3535,411,0 chrVII 1027936 . T C 3075 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.3734;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.78;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3108,354,0 chrVII 1028091 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.57;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2420,264,0 chrVII 1028092 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=19.00;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2332,261,0 chrVII 1028485 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.08;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3531,411,0 chrVII 1028507 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.646;QD=23.02;ReadPosRankSum=1.706;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3164,357,0 chrVII 1029160 . T C 2777 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9212;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.34;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2810,318,0 chrVII 1029196 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2874,315,0 chrVII 1029431 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2868,315,0 chrVII 1029502 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2263,261,0 chrVII 1029874 . T A 1478 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.82;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1511,168,0 chrVII 1029881 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.86;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1577,180,0 chrVII 1029980 . T C 1808 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1841,210,0 chrVII 1030324 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.29;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2341,255,0 chrVII 1030351 . T C 2081 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.87;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2114,243,0 chrVII 1030416 . G A 2253 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=26.20;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2286,249,0 chrVII 1030489 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.27;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1964,216,0 chrVII 1030492 . T C 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=90;Dels=0.00;FS=3.745;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.346;QD=20.82;ReadPosRankSum=1.694;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1907,216,0 chrVII 1030582 . A C 2310 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.79;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2343,267,0 chrVII 1030794 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=18.42;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2243,243,0 chrVII 1030806 . T C 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;DP=124;Dels=0.00;FS=5.791;HaplotypeScore=116.5371;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-1.057;QD=14.86;ReadPosRankSum=1.350;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:1876,216,0 chrVII 1030846 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6368;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=16.28;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2393,267,0 chrVII 1030897 . C T 3486.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7263;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.55;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3486,390,0 chrVII 1030947 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.35;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3828,414,0 chrVII 1031011 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=23.39;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3392,387,0 chrVII 1031183 . A T 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.225;QD=20.59;ReadPosRankSum=1.704;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2566,291,0 chrVII 1031217 . A C 2645 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2678,306,0 chrVII 1031479 . C G 1825 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.99;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1858,216,0 chrVII 1031685 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.92;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2271,249,0 chrVII 1031725 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.0441;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.49;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2642,297,0 chrVII 1031802 . A G 2941 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.95;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2974,336,0 chrVII 1031857 . A G 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=118;Dels=0.00;FS=5.720;HaplotypeScore=5.0072;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.336;QD=21.95;ReadPosRankSum=2.888;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2623,300,0 chrVII 1031894 . C G 2885 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.65;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2918,333,0 chrVII 1031962 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.90;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3274,372,0 chrVII 1032307 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.321;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.388;QD=23.07;ReadPosRankSum=1.672;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2732,309,0 chrVII 1032401 . A G 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;DP=81;Dels=0.00;FS=4.997;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.118;QD=16.57;ReadPosRankSum=1.644;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1375,156,0 chrVII 1032459 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2381,267,0 chrVII 1032561 . T A 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.533;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.839;QD=23.77;ReadPosRankSum=1.696;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2339,255,0 chrVII 1033479 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.56;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2673,291,0 chrVII 1033498 . A G 2500 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.49;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2533,291,0 chrVII 1033530 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.36;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2404,273,0 chrVII 1033602 . T C 2406 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.49;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2439,279,0 chrVII 1033653 . A T 2949 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.22;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2982,330,0 chrVII 1033830 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0074;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.89;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3251,360,0 chrVII 1034067 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.213;QD=23.31;ReadPosRankSum=1.649;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3892,453,0 chrVII 1034214 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.47;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3348,381,0 chrVII 1034384 . G C 2502 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.95;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2535,288,0 chrVII 1034472 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.08;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3126,354,0 chrVII 1034541 . A G 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.823;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.183;QD=22.60;ReadPosRankSum=1.690;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1886,213,0 chrVII 1034625 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.57;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1802,204,0 chrVII 1034700 . A G 2305 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=18.3174;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.34;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2338,267,0 chrVII 1034846 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.93;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2830,309,0 chrVII 1035138 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.21;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3372,384,0 chrVII 1036371 . T C 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=139;Dels=0.00;FS=6.575;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.880;QD=18.67;ReadPosRankSum=2.414;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2628,297,0 chrVII 1036380 . T C 2711 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.96;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2744,312,0 chrVII 1036885 . G A 4233.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.52;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4233,468,0 chrVII 1037074 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.70;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3995,453,0 chrVII 1037211 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4065,444,0 chrVII 1037301 . T C 3018 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.04;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3051,348,0 chrVII 1037556 . A C 2312 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.89;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2345,264,0 chrVII 1037724 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.30;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2107,243,0 chrVII 1037779 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.23;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2123,243,0 chrVII 1037791 . A T 2140 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.77;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2173,240,0 chrVII 1038142 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2018,222,0 chrVII 1038689 . T C 2424 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2457,279,0 chrVII 1039187 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=8.7759;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.76;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2081,228,0 chrVII 1039298 . T G 1652 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.63;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1685,192,0 chrVII 1039378 . A C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.015;QD=23.17;ReadPosRankSum=1.673;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1377,156,0 chrVII 1039425 . A C 1016 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.09;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1049,120,0 chrVII 1039460 . T C 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.152;QD=21.09;ReadPosRankSum=1.672;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1235,141,0 chrVII 1039470 . C G 1395 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.80;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1428,162,0 chrVII 1039568 . T A 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.168;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.364;QD=17.85;ReadPosRankSum=3.344;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:4,76:80:99:1461,165,0 chrVII 1039575 . T C 1468 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.35;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1501,174,0 chrVII 1039621 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.09;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1408,159,0 chrVII 1039634 . A T 1299 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=15.84;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1332,153,0 chrVII 1039678 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.34;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2274,249,0 chrVII 1039783 . T G 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.223;QD=20.74;ReadPosRankSum=1.633;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2936,339,0 chrVII 1039805 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.52;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2537,288,0 chrVII 1040012 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.49;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2430,267,0 chrVII 1040013 . C T 2413 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.62;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2446,270,0 chrVII 1040155 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6917;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.23;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2264,249,0 chrVII 1040573 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.117;QD=21.03;ReadPosRankSum=2.365;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2494,282,0 chrVII 1040792 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.94;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2801,306,0 chrVII 1040816 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.24;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2942,321,0 chrVII 1040852 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=2.722;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.310;QD=22.39;ReadPosRankSum=2.404;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2451,276,0 chrVII 1041119 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.315;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.705;QD=22.75;ReadPosRankSum=1.703;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2763,309,0 chrVII 1041188 . T C 2549 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.56;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2582,300,0 chrVII 1041395 . A G 2544 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.74;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2577,297,0 chrVII 1041632 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.68;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2641,291,0 chrVII 1041814 . A G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.032;QD=22.04;ReadPosRankSum=1.700;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2413,276,0 chrVII 1041874 . T C 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=115;Dels=0.00;FS=2.887;HaplotypeScore=8.7801;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.802;QD=22.19;ReadPosRankSum=2.407;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2585,294,0 chrVII 1042463 . T C 2848 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=17.5299;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.91;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2881,333,0 chrVII 1042643 . T G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=171;Dels=0.00;FS=2.614;HaplotypeScore=14.8715;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.325;QD=22.74;ReadPosRankSum=2.377;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3889,450,0 chrVII 1043244 . A G 4531.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.5205;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.72;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4531,516,0 chrVII 1043695 . T G 1499 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.97;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1532,177,0 chrVII 1043745 . A C 757 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:90:790,90,0 chrVII 1043778 . T C 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=8.3300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=5.00;ReadPosRankSum=-0.742;SB=2.10 GT:AD:DP:GQ:PL 1/1:1,6:9:9:77,9,0 chrVII 1044014 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.55;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2011,222,0 chrVII 1044068 . G C 2302 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.12;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2335,267,0 chrVII 1044104 . G T 2677 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.91;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2710,297,0 chrVII 1044266 . A C 2643 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.18;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2676,306,0 chrVII 1044356 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.642;DP=156;Dels=0.00;FS=4.421;HaplotypeScore=7.7121;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.946;QD=21.22;ReadPosRankSum=3.260;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:5,151:156:99:3310,381,0 chrVII 1044371 . A G 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=156;Dels=0.00;FS=2.672;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.339;QD=20.27;ReadPosRankSum=2.387;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3195,369,0 chrVII 1044966 . T C 2070 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.79;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2103,240,0 chrVII 1045136 . T G 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.079;QD=22.81;ReadPosRankSum=1.693;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2063,237,0 chrVII 1045190 . C T 2421 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.21;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2454,270,0 chrVII 1045214 . A T 2766 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.24;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2799,306,0 chrVII 1045427 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.403;QD=22.92;ReadPosRankSum=1.656;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3173,369,0 chrVII 1045920 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.30;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4089,453,0 chrVII 1046573 . T C 2945 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2978,339,0 chrVII 1046648 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.22;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2579,288,0 chrVII 1046683 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.47;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2760,303,0 chrVII 1046925 . G C 2855 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.29;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2888,330,0 chrVII 1046941 . A C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=149;Dels=0.00;FS=3.039;HaplotypeScore=7.9128;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.337;QD=18.79;ReadPosRankSum=2.350;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:2832,324,0 chrVII 1047531 . G T 2922 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2955,321,0 chrVII 1047921 . T C 1847 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.99;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1880,213,0 chrVII 1047984 . T A 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.638;QD=21.86;ReadPosRankSum=1.701;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2460,279,0 chrVII 1048158 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.48;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2922,330,0 chrVII 1048356 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7679;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.84;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3381,381,0 chrVII 1048419 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=10.59;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:1442,165,0 chrVII 1048437 . G A 484.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.305;DP=131;Dels=0.00;FS=30.438;HaplotypeScore=142.4386;MLEAC=1;MLEAF=0.500;MQ=39.87;MQ0=0;MQRankSum=2.493;QD=3.69;ReadPosRankSum=8.182;SB=-3.700e+02 GT:AD:DP:GQ:PL 0/1:55,76:131:99:514,0,489 chrVII 1048545 . G A 79.51 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.9614;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=0.92;SB=-3.895e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:12:112,12,0 chrVII 1048655 . G A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.448;DP=41;Dels=0.00;FS=23.335;HaplotypeScore=9.0861;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=0;MQRankSum=1.973;QD=0.63;ReadPosRankSum=-3.836;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:27,11:41:56:56,0,254 chrVII 1049349 . T C 5458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=256;Dels=0.00;FS=16.247;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.534;QD=21.32;ReadPosRankSum=3.399;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:4,251:256:99:5458,638,0 chrVII 1050057 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=98.9450;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=20.29;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2326,255,0 chrVII 1050211 . C A 413 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=12.4940;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=4.44;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:92:48:446,48,0 chrVII 1050446 . G C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.34;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:3819,435,0 chrVII 1051057 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=2.887;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.541;QD=21.08;ReadPosRankSum=2.415;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3069,357,0 chrVII 1051093 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=2.761;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.710;QD=22.55;ReadPosRankSum=2.419;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3631,414,0 chrVII 1051848 . T C 312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=56;Dels=0.00;FS=2.646;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.982;QD=5.57;ReadPosRankSum=2.798;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:4,52:56:42:345,42,0 chrVII 1051850 . G A 541 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=9.33;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:69:574,69,0 chrVII 1051973 . T C 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.945;QD=21.50;ReadPosRankSum=1.680;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,65:68:99:1495,171,0 chrVII 1051991 . A G 1601 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.79;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1634,186,0 chrVII 1052107 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.10;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2967,324,0 chrVII 1052468 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2278,258,0 chrVII 1052548 . A G 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.458;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.595;QD=21.31;ReadPosRankSum=1.664;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2185,249,0 chrVII 1052634 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.25;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2264,261,0 chrVII 1052799 . A T 2494 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=120.8576;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.61;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2527,279,0 chrVII 1052907 . T C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.364;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.704;QD=21.88;ReadPosRankSum=1.705;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2834,330,0 chrVII 1052940 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.6401;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.04;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2936,324,0 chrVII 1053627 . C T 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=208;Dels=0.00;FS=3.181;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.083;QD=22.65;ReadPosRankSum=-0.566;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4712,513,0 chrVII 1053897 . T A 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=84;Dels=0.00;FS=6.232;HaplotypeScore=9.2771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.279;QD=19.01;ReadPosRankSum=1.650;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1630,183,0 chrVII 1054083 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1571,177,0 chrVII 1054260 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3264,372,0 chrVII 1054411 . T C 2854 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2887,330,0 chrVII 1054476 . A T 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.684;QD=21.99;ReadPosRankSum=1.684;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3221,366,0 chrVII 1055001 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.46;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3302,363,0 chrVII 1055127 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=133;Dels=0.00;FS=6.101;HaplotypeScore=10.2984;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.492;QD=22.86;ReadPosRankSum=2.887;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3073,351,0 chrVII 1055247 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=19.54;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2769,303,0 chrVII 1055697 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.4593;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.50;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3600,420,0 chrVII 1056387 . T A 3106 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.35;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3139,345,0 chrVII 1056600 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3770;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.01;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2403,261,0 chrVII 1056817 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=14.9245;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.28;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3189,345,0 chrVII 1057470 . C G 1154 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.77;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1187,138,0 chrVII 1057542 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.41;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1736,195,0 chrVII 1057568 . T A 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=2.909;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=1.514;QD=22.32;ReadPosRankSum=2.325;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1796,198,0 chrVII 1057752 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.25;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2147,243,0 chrVII 1057978 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.99;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3607,423,0 chrVII 1058505 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=189;Dels=0.00;FS=7.237;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.600;QD=22.00;ReadPosRankSum=2.423;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4158,471,0 chrVII 1059028 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2845,315,0 chrVII 1059129 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3009,339,0 chrVII 1059252 . T C 5142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.551;QD=23.59;ReadPosRankSum=2.415;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:5142,591,0 chrVII 1059363 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3203,363,0 chrVII 1059977 . T G 2857 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.98;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2890,321,0 chrVII 1060014 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2911,315,0 chrVII 1060055 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.22;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2459,270,0 chrVII 1060130 . A C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.7206;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.417;QD=20.57;ReadPosRankSum=1.589;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2542,291,0 chrVII 1060260 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2876,315,0 chrVII 1060642 . A G 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=107;Dels=0.00;FS=3.005;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.484;QD=23.56;ReadPosRankSum=2.381;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2554,294,0 chrVII 1060673 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.12;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2511,276,0 chrVII 1061120 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4291,477,0 chrVII 1061417 . A G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=7.874;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.605;QD=22.08;ReadPosRankSum=2.411;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2859,333,0 chrVII 1061546 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.90;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2990,327,0 chrVII 1061571 . A G 2212 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.23;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2245,255,0 chrVII 1061633 . A G 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.723;QD=19.35;ReadPosRankSum=1.678;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2510,288,0 chrVII 1061731 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.24;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3393,372,0 chrVII 1062031 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=226;Dels=0.00;FS=3.551;HaplotypeScore=12.3061;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.250;QD=20.14;ReadPosRankSum=1.685;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,221:226:99:4551,531,0 chrVII 1062188 . C G 3481.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.78;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3481,399,0 chrVII 1062599 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.612;QD=21.87;ReadPosRankSum=1.680;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2942,339,0 chrVII 1062869 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.83;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2408,279,0 chrVII 1063172 . A C 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-0.192;QD=22.57;ReadPosRankSum=1.662;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2267,255,0 chrVII 1063182 . A T 2044 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=21.98;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2077,234,0 chrVII 1063193 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.19;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1792,204,0 chrVII 1063263 . C A 681 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.46;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:81:714,81,0 chrVII 1063368 . A G 350 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=14.58;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:45:383,45,0 chrVII 1063378 . C T 295 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=16.39;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:36:328,36,0 chrVII 1063387 . T C 207.01 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=14.79;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:240,27,0 chrVII 1063426 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=2.48;SB=-2.864e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:51,6,0 chrVII 1063622 . G C 96.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=12.03;SB=-5.114e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:129,15,0 chrVII 1063629 . T C 234 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=14.63;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:30:267,30,0 chrVII 1063668 . A C 577 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=17.48;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:69:610,69,0 chrVII 1063699 . C T 525 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.44;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:63:558,63,0 chrVII 1063846 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.430;QD=24.04;ReadPosRankSum=2.350;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2990,345,0 chrVII 1064130 . T G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7083;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.49;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3524,411,0 chrVII 1065116 . A C 2799 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2832,324,0 chrVII 1065185 . T C 2916 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.60;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2949,333,0 chrVII 1065344 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.64;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1298,153,0 chrVII 1065480 . A T 937 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.31;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:970,108,0 chrVII 1065706 . T C 2798 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=21.20;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2831,327,0 chrVII 1065722 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.82;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3073,348,0 chrVII 1065752 . T C 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=6.402;HaplotypeScore=3.4318;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;MQRankSum=0.121;QD=16.34;ReadPosRankSum=2.401;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2516,294,0 chrVII 1065775 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=16.87;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2327,252,0 chrVII 1065783 . T C 2033 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=14.73;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2066,246,0 chrVII 1065808 . A T 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=157;Dels=0.00;FS=6.104;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=-0.840;QD=15.07;ReadPosRankSum=2.904;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:2399,264,0 chrVII 1065820 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=14.82;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2212,252,0 chrVII 1065890 . T A 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.862;HaplotypeScore=7.2301;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.237;QD=20.20;ReadPosRankSum=1.708;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2982,330,0 chrVII 1065898 . G C 2750 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=18.97;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2783,324,0 chrVII 1065916 . A G 2963 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=20.02;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2996,342,0 chrVII 1066008 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=21.04;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2831,312,0 chrVII 1066011 . T C 2741 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=20.92;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2774,309,0 chrVII 1066050 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.3968;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=19.10;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2344,261,0 chrVII 1066075 . A T 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-1.431;QD=19.23;ReadPosRankSum=1.672;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2283,255,0 chrVII 1066097 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=20.00;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2473,273,0 chrVII 1066107 . G A 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.082;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;MQRankSum=0.341;QD=19.98;ReadPosRankSum=1.306;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2491,285,0 chrVII 1066166 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.191;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=0.380;QD=18.42;ReadPosRankSum=1.676;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2317,264,0 chrVII 1066178 . T A 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.498;DP=126;Dels=0.00;FS=2.050;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.856;QD=20.14;ReadPosRankSum=3.054;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2571,282,0 chrVII 1066293 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=23.28;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3446,384,0 chrVII 1066308 . A G 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=6.978;HaplotypeScore=6.2755;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.140;QD=19.39;ReadPosRankSum=2.367;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2922,336,0 chrVII 1066316 . C T 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.7213;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=-1.135;QD=20.60;ReadPosRankSum=1.684;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3020,330,0 chrVII 1066425 . G A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.19;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4426,477,0 chrVII 1066575 . A G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.711;QD=20.95;ReadPosRankSum=1.701;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2400,279,0 chrVII 1066596 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.09;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2922,321,0 chrVII 1066639 . T C 2652 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.94;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2685,303,0 chrVII 1066693 . A G 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=84;Dels=0.00;FS=6.058;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.916;QD=20.54;ReadPosRankSum=2.868;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1758,201,0 chrVII 1066789 . A T 1630 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.30;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1663,186,0 chrVII 1066799 . T C 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=0.082;QD=14.57;ReadPosRankSum=1.666;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1563,177,0 chrVII 1066828 . T C 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=2.652;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=-0.485;QD=14.74;ReadPosRankSum=2.402;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1566,177,0 chrVII 1066851 . A G 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=105;Dels=0.00;FS=10.417;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=-2.379;QD=9.28;ReadPosRankSum=2.379;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1007,137,0 chrVII 1066889 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.42;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2300,252,0 chrVII 1066941 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.09;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2922,327,0 chrVII 1067117 . A T 110.20 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=112.9036;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=0.410;QD=0.85;ReadPosRankSum=-4.710;SB=-2.420e+01 GT:AD:DP:GQ:PL 0/1:119,11:130:2:139,0,2 chrVII 1067501 . C T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=21.78;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3616,396,0 chrVII 1067608 . C A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=22.34;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3730,414,0 chrVII 1067689 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=19.64;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2508,276,0 chrVII 1067724 . T C 1618 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=16.51;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1651,195,0 chrVII 1067725 . G A 1673 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;MQRankSum=0.601;QD=17.07;ReadPosRankSum=-1.661;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1706,195,0 chrVII 1067732 . T C 1630 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=15.09;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1663,189,0 chrVII 1067739 . G A 1326 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=14.57;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1359,156,0 chrVII 1067740 . C G 1287 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=14.14;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1320,156,0 chrVII 1067741 . A T 1293 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=14.21;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1326,156,0 chrVII 1067742 . T C 1315 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=14.45;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1348,156,0 chrVII 1067747 . G A 1424 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=13.19;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1457,162,0 chrVII 1067756 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=11.81;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1462,165,0 chrVII 1067771 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=11.77;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1563,177,0 chrVII 1067792 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=11.74;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1665,186,0 chrVII 1067807 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=11.14;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1738,195,0 chrVII 1067822 . C T 1616 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=10.36;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:1649,186,0 chrVII 1067825 . A G 1619 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=4.269;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;MQRankSum=-1.352;QD=10.45;ReadPosRankSum=1.710;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:1652,186,0 chrVII 1067828 . C A 1638 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=11.54;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1671,186,0 chrVII 1067830 . C T 1603 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=11.29;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1636,186,0 chrVII 1067832 . T A 1634 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=11.51;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1667,186,0 chrVII 1067834 . T C 1584 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=11.15;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1617,186,0 chrVII 1067840 . A G 1530 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=4.614;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;MQRankSum=-0.535;QD=11.25;ReadPosRankSum=1.707;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:1563,183,0 chrVII 1067843 . G A 1515 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=11.56;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1548,177,0 chrVII 1067846 . C T 549 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.84;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:66:582,66,0 chrVII 1067848 . A G 538 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.69;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:66:571,66,0 chrVII 1067849 . G T 554 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.91;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:66:587,66,0 chrVII 1067851 . C A 559 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.99;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:66:592,66,0 chrVII 1067853 . C A 506 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.23;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:63:539,63,0 chrVII 1067854 . T C 501 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.422;QD=6.96;ReadPosRankSum=2.381;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:63:534,63,0 chrVII 1067857 . G A 556 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=3.92;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:66:589,66,0 chrVII 1067861 . C T 625 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=4.28;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:75:658,75,0 chrVII 1067863 . C T 630 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=4.32;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:75:663,75,0 chrVII 1067867 . G C 647 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.26;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:78:680,78,0 chrVII 1067869 . G A 703 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=4.56;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:84:736,84,0 chrVII 1067872 . A G 677 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=4.26;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:84:710,84,0 chrVII 1067884 . T C 886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;MQRankSum=-1.732;QD=5.40;ReadPosRankSum=1.690;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:919,105,0 chrVII 1067897 . G A 1072 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=6.78;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1105,123,0 chrVII 1067948 . C A 2962 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=20.86;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2995,345,0 chrVII 1067981 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=20.25;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3483,405,0 chrVII 1067990 . G A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=20.03;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3845,444,0 chrVII 1068017 . A C 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=38.62;MQ0=0;MQRankSum=1.413;QD=20.89;ReadPosRankSum=1.645;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5014,573,0 chrVII 1068100 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=183;Dels=0.00;FS=6.442;HaplotypeScore=19.5478;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;MQRankSum=-1.576;QD=22.08;ReadPosRankSum=2.395;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:2,178:183:99:4041,468,0 chrVII 1068132 . C T 4532.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=23.24;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4532,510,0 chrVII 1068282 . G A 1714 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8588;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=15.58;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1747,192,0 chrVII 1068283 . T C 1616 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.6369;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;MQRankSum=0.016;QD=14.83;ReadPosRankSum=1.700;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1649,186,0 chrVII 1068287 . G A 1594 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=7.6369;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=15.48;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1627,180,0 chrVII 1068290 . T C 1524 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=15.09;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1557,177,0 chrVII 1068292 . T C 1482 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8147;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.178;QD=14.82;ReadPosRankSum=0.901;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1515,174,0 chrVII 1068293 . G A 1555 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8147;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.55;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1588,174,0 chrVII 1068298 . C T 1516 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.8482;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.690;QD=10.60;ReadPosRankSum=-0.254;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:1549,174,0 chrVII 1068301 . C T 1586 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.09;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1619,177,0 chrVII 1068302 . A T 1556 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9258;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.375;QD=10.88;ReadPosRankSum=-0.715;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:1589,177,0 chrVII 1068305 . A T 1636 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.9497;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=9.62;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:1669,186,0 chrVII 1068308 . A G 1709 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1201;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=9.44;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:1742,204,0 chrVII 1068344 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.7893;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=13.28;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:2781,312,0 chrVII 1068401 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=20.30;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4040,441,0 chrVII 1068404 . G A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=20.34;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3884,426,0 chrVII 1068432 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;DP=181;Dels=0.00;FS=3.083;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;MQRankSum=-1.120;QD=20.08;ReadPosRankSum=1.713;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3635,390,0 chrVII 1068524 . T C 4457.01 filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=5;QD=21.96;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4457,513,0 chrVII 1068569 . T C 3073 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=17.0841;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=11;MQRankSum=-0.861;QD=16.52;ReadPosRankSum=1.692;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3106,357,0 chrVII 1068608 . A G 3736.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=188;Dels=0.00;FS=3.034;HaplotypeScore=18.4929;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=7;MQRankSum=-1.522;QD=19.87;ReadPosRankSum=1.694;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3736,429,0 chrVII 1068673 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=21.13;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4669,522,0 chrVII 1068692 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=214;Dels=0.00;FS=6.374;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;MQRankSum=-0.338;QD=17.71;ReadPosRankSum=2.381;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:3789,441,0 chrVII 1068728 . T C 2506 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=2;QD=12.79;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2539,291,0 chrVII 1068731 . A G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=3.131;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=2;MQRankSum=-1.637;QD=12.89;ReadPosRankSum=1.713;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:2418,285,0 chrVII 1068740 . A G 2051 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=7;QD=11.92;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2084,249,0 chrVII 1068743 . T G 2009 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=8;QD=11.68;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2042,240,0 chrVII 1068826 . C T 2689 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.007;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=8;MQRankSum=1.807;QD=16.91;ReadPosRankSum=-0.633;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:3,156:159:99:2722,291,0 chrVII 1068994 . A G 222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.654;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=21.9130;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=0;MQRankSum=-1.251;QD=7.40;ReadPosRankSum=3.081;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:4,26:30:30:255,30,0 chrVII 1069006 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.5710;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=0;QD=1.16;SB=-2.851e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:6:52,6,0 chrVII 1076293 . A G 667 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.52;MQ0=14;QD=14.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:78:700,78,0 chrVII 1076432 . A G 780 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=26;QD=10.68;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,71:73:90:813,90,0 chrVII 1076498 . G A 1842 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=16;QD=20.47;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1875,204,0 chrVII 1076582 . G A 2493 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=4;QD=21.68;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2526,282,0 chrVII 1076820 . C T 176.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=17;Dels=0.00;FS=9.542;HaplotypeScore=5.2409;MLEAC=2;MLEAF=1.00;MQ=20.43;MQ0=7;MQRankSum=0.751;QD=10.35;ReadPosRankSum=-0.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,15:17:24:209,24,0 chrVII 1077997 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.17;MQ0=39;QD=0.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:6:55,6,0 chrVII 1078043 . C G 828 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.83;MQ0=50;QD=9.30;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:861,99,0 chrVII 1078212 . A G 551 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.13;MQ0=12;QD=15.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:35:66:584,66,0 chrVII 1078256 . G C 711 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=34;QD=9.74;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:84:744,84,0 chrVII 1078573 . G A 134.13 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=6;QD=11.18;SB=-8.017e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:167,18,0 chrVII 1078645 . A G 441 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.86;MQ0=14;QD=11.92;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:54:474,54,0 chrVII 1078750 . T C 1911 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.892;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=55.7685;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=37;MQRankSum=-4.867;QD=14.48;ReadPosRankSum=4.867;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:9,121:130:99:1944,228,0 chrVII 1078862 . C T 3389.01 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=4;QD=20.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3389,381,0 chrVII 1079115 . T C 6947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=19.4840;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=2;MQRankSum=1.136;QD=22.12;ReadPosRankSum=1.665;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:1,309:314:99:6947,810,0 chrVII 1079145 . C T 5474.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=1;QD=22.53;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5474,615,0 chrVII 1079171 . A T 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=216;Dels=0.00;FS=5.933;HaplotypeScore=4.1301;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=1;MQRankSum=0.182;QD=18.78;ReadPosRankSum=2.734;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:4056,459,0 chrVII 1079183 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=1;QD=18.45;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3893,438,0 chrVII 1079216 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=232;Dels=0.00;FS=4.389;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=1;MQRankSum=-0.623;QD=16.82;ReadPosRankSum=1.671;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,228:232:99:3902,459,0 chrVII 1079230 . A T 3988.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=238;Dels=0.00;FS=5.448;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=8;MQRankSum=-1.563;QD=16.76;ReadPosRankSum=2.935;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:3,235:238:99:3988,441,0 chrVII 1079233 . A T 3752.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=8;MQRankSum=0.528;QD=15.57;ReadPosRankSum=1.687;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:3752,429,0 chrVII 1079344 . A G 3987.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=248;Dels=0.00;FS=5.972;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=11;MQRankSum=-0.372;QD=16.08;ReadPosRankSum=2.970;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:3,243:248:99:3987,465,0 chrVII 1079443 . T C 1973 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8572;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=7;QD=16.04;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2006,231,0 chrVII 1079473 . C G 1975 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=8;QD=15.19;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2008,228,0 chrVII 1079528 . C T 1433 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=10.8758;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=10;QD=10.38;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:1466,171,0 chrVII 1079556 . A G 1025 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=7;MQRankSum=-1.327;QD=10.15;ReadPosRankSum=1.695;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1058,123,0 chrVII 1079563 . T C 789 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=7;QD=9.07;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:93:822,93,0 chrVII 1079596 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.29;MQ0=5;QD=1.22;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:6:52,6,0 chrVII 1079615 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=13.39;MQ0=5;QD=0.40;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:6:53,6,0 chrVII 1079617 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=13.39;MQ0=5;QD=0.43;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:6:55,6,0 chrVII 1079630 . G A 302 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=5;QD=4.03;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:39:335,39,0 chrVII 1079643 . C G 578 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=5;QD=6.15;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:69:611,69,0 chrVII 1079656 . T G 891 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=5;MQRankSum=-0.766;QD=8.17;ReadPosRankSum=1.699;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:924,105,0 chrVII 1079763 . T A 1795 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=11;QD=20.17;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1828,204,0 chrVII 1079845 . C A 1850 filter AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=49;QD=10.88;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:1883,207,0 chrVII 1079904 . A G 2797 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=215;Dels=0.00;FS=5.512;HaplotypeScore=16.1832;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=64;MQRankSum=2.327;QD=13.01;ReadPosRankSum=2.940;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:2830,327,0 chrVII 1079970 . A G 256.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;DP=122;Dels=0.00;FS=10.619;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=16.51;MQ0=69;MQRankSum=-1.104;QD=2.10;ReadPosRankSum=-2.270;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:58,64:122:99:286,0,354 chrVII 1080102 . G T 4159.01 filter AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=26;QD=17.77;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4159,477,0 chrVII 1080184 . G A 1586 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=19.64;MQ0=35;QD=12.49;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1619,186,0 chrVII 1080329 . T C 137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.468;DP=194;Dels=0.00;FS=76.140;HaplotypeScore=16.1213;MLEAC=1;MLEAF=0.500;MQ=13.91;MQ0=61;MQRankSum=-1.498;QD=0.71;ReadPosRankSum=3.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,64:194:99:167,0,374 chrVII 1080338 . T C 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.103;DP=200;Dels=0.00;FS=75.263;HaplotypeScore=12.9666;MLEAC=1;MLEAF=0.500;MQ=13.80;MQ0=65;MQRankSum=-0.731;QD=0.56;ReadPosRankSum=2.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,61:200:99:142,0,325 chrVII 1080341 . C T 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.565;DP=198;Dels=0.00;FS=76.369;HaplotypeScore=10.7697;MLEAC=1;MLEAF=0.500;MQ=13.70;MQ0=66;MQRankSum=-0.523;QD=0.63;ReadPosRankSum=1.921;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,61:198:99:154,0,287 chrVII 1080482 . T G 533 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=11.59;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:69:566,69,0 chrVII 1080497 . T C 203 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=0;QD=9.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:30:236,30,0 chrVII 1080501 . A G 178.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.18;MQ0=0;QD=9.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:27:211,27,0 chrVII 1080503 . C T 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.75;MQ0=5;QD=5.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:21:164,21,0 chrVII 1080690 . A G 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080691 . A G 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080692 . A T 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080700 . A G 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080702 . C A 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080703 . C A 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080706 . A G 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080708 . G A 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080711 . A T 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrVII 1080726 . A T 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=0.727;QD=8.24;ReadPosRankSum=-0.727;SB=2.24 GT:AD:DP:GQ:PL 1/1:1,3:4:9:65,9,0 chrVII 1081221 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.942;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=24.5733;MLEAC=2;MLEAF=1.00;MQ=23.22;MQ0=1;MQRankSum=-3.820;QD=0.27;ReadPosRankSum=4.024;SB=-2.777e+01 GT:AD:DP:GQ:PL 1/1:6,67:74:6:51,6,0 chrVII 1081242 . G A 249.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.351;DP=118;Dels=0.00;FS=10.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.02;MQ0=3;MQRankSum=-2.984;QD=2.11;ReadPosRankSum=1.852;SB=-1.489e+02 GT:AD:DP:GQ:PL 0/1:48,70:118:25:279,0,25 chrVII 1081252 . C G 353 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=9;QD=2.65;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:45:386,45,0 chrVII 1081262 . T C 530.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.082;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.4015;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=12;MQRankSum=-3.312;QD=3.54;ReadPosRankSum=4.082;SB=-2.143e+02 GT:AD:DP:GQ:PL 1/1:6,104:150:66:563,66,0 chrVII 1081274 . A G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.736;DP=179;Dels=0.00;FS=7.511;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=32;MQRankSum=-3.343;QD=0.63;ReadPosRankSum=-0.134;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:98,78:179:99:143,0,542 chrVII 1081288 . G A 677.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.947;DP=193;Dels=0.00;FS=15.013;HaplotypeScore=4.2335;MLEAC=1;MLEAF=0.500;MQ=20.30;MQ0=42;MQRankSum=-1.723;QD=3.51;ReadPosRankSum=1.707;SB=-2.430e+02 GT:AD:DP:GQ:PL 0/1:51,139:193:99:707,0,106 chrVII 1081293 . C G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.283;DP=187;Dels=0.00;FS=15.035;HaplotypeScore=4.2335;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=45;MQRankSum=2.443;QD=0.60;ReadPosRankSum=-2.330;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,48:187:99:143,0,665 chrVII 1081363 . G A 1028 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5285;MLEAC=2;MLEAF=1.00;MQ=24.92;MQ0=27;QD=14.48;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1061,117,0 chrVII 1081419 . A G 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.902;DP=124;Dels=0.00;FS=49.930;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=1;MQRankSum=-7.313;QD=0.22;ReadPosRankSum=-6.442;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,48:124:57:57,0,1627 chrVII 1081432 . C T 1692.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.939;DP=177;Dels=0.00;FS=44.082;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=1;MQRankSum=8.294;QD=9.56;ReadPosRankSum=3.949;SB=-6.100e+02 GT:AD:DP:GQ:PL 0/1:95,82:177:99:1722,0,252 chrVII 1081450 . G A 376.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.250;DP=186;Dels=0.00;FS=30.089;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.76;MQ0=12;MQRankSum=-7.627;QD=2.02;ReadPosRankSum=2.382;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:74,111:186:99:406,0,1430 chrVII 1081467 . C T 477.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.922;DP=200;Dels=0.00;FS=21.781;HaplotypeScore=4.1100;MLEAC=1;MLEAF=0.500;MQ=22.94;MQ0=34;MQRankSum=-6.549;QD=2.39;ReadPosRankSum=5.059;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:64,135:200:99:507,0,1172 chrVII 1081493 . A G 673.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.039;DP=215;Dels=0.00;FS=2.837;HaplotypeScore=11.7755;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=68;MQRankSum=5.439;QD=3.13;ReadPosRankSum=0.607;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:169,46:215:99:703,0,598 chrVII 1081527 . G A 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;DP=134;Dels=0.00;FS=25.714;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=16.70;MQ0=86;MQRankSum=0.458;QD=1.52;ReadPosRankSum=-1.181;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:102,31:134:99:234,0,391 chrVII 1081530 . T A 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;DP=128;Dels=0.00;FS=21.848;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=16.08;MQ0=84;MQRankSum=0.537;QD=1.73;ReadPosRankSum=1.229;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:104,24:128:99:251,0,414 chrVII 1081655 . A G 1445 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=9;QD=12.57;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1478,165,0 chrVII 1081658 . G A 1175 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=7;QD=10.88;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1208,138,0 chrVII 1081660 . G A 980 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.859;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=6;MQRankSum=-0.654;QD=9.61;ReadPosRankSum=2.219;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:1013,123,0 chrVII 1081661 . C G 964 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.013;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=6;MQRankSum=-1.205;QD=9.54;ReadPosRankSum=2.242;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:997,123,0 chrVII 1081664 . G A 1150 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=4;QD=11.98;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1183,129,0 chrVII 1081683 . G T 116.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=5;QD=2.83;SB=-1.721e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:18:149,18,0 chrVII 1081686 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=31;Dels=0.00;FS=5.351;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=7;MQRankSum=-0.867;QD=1.55;ReadPosRankSum=1.589;SB=-7.798e+01 GT:AD:DP:GQ:PL 1/1:5,25:31:9:80,9,0 chrVII 1081688 . C G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=9;QD=1.34;SB=-7.498e+01 GT:AD:DP:GQ:PL 1/1:3,29:32:9:75,9,0 chrVII 1081731 . G A 816 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=20;QD=9.71;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:8,76:84:96:849,96,0 chrVII 1081752 . C G 978 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=28;QD=8.65;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:6,98:113:99:1011,120,0 chrVII 1081767 . C T 2037 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6227;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=27;QD=12.50;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:11,152:163:99:2070,234,0 chrVII 1081803 . G A 4056.01 filter AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=10;QD=16.62;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:4056,456,0 chrVII 1081815 . T C 4219.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=263;Dels=0.00;FS=7.947;HaplotypeScore=11.8106;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=10;MQRankSum=-1.257;QD=16.04;ReadPosRankSum=3.426;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:4,259:263:99:4219,498,0 chrVII 1081887 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6566;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=17.06;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2780,318,0 chrVII 1081908 . A T 1819 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DP=117;Dels=0.00;FS=1.609;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;MQRankSum=3.758;QD=15.55;ReadPosRankSum=4.811;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:10,107:117:99:1852,210,0 chrVII 1081910 . C T 1667 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;QD=17.19;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1700,198,0 chrVII 1081912 . C T 1670 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=16.21;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1703,198,0 chrVII 1081936 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=12.48;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,117:123:99:1568,192,0 chrVII 1081961 . T G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.3045;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=16.17;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3347,378,0 chrVII 1081991 . G A 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.274;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.7571;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;MQRankSum=0.836;QD=19.09;ReadPosRankSum=-0.876;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:1,258:264:99:5058,567,0 chrVII 1082001 . A G 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.695;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=18.4797;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;MQRankSum=1.670;QD=18.96;ReadPosRankSum=1.720;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:1,277:281:99:5329,618,0 chrVII 1082084 . T C 5939.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.124;DP=337;Dels=0.00;FS=26.132;HaplotypeScore=15.1751;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=8;MQRankSum=8.958;QD=17.62;ReadPosRankSum=3.436;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:55,282:337:99:5939,539,0 chrVII 1082118 . C T 4285.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=288;Dels=0.00;FS=15.992;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=17;MQRankSum=4.760;QD=14.88;ReadPosRankSum=-4.594;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:17,269:288:99:4285,447,0 chrVII 1082123 . A T 4530.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=299;Dels=0.00;FS=9.451;HaplotypeScore=12.9038;MLEAC=2;MLEAF=1.00;MQ=31.61;MQ0=15;MQRankSum=-1.033;QD=15.15;ReadPosRankSum=2.372;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:2,297:299:99:4530,510,0 chrVII 1082268 . T C 8446.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=407;Dels=0.00;FS=8.929;HaplotypeScore=22.6401;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=9;MQRankSum=1.544;QD=20.75;ReadPosRankSum=3.414;SB=-4.257e+03 GT:AD:DP:GQ:PL 1/1:4,403:407:99:8446,980,0 chrVII 1082290 . C T 637.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.612;DP=470;Dels=0.00;FS=0.000;HaplotypeScore=32.0959;MLEAC=1;MLEAF=0.500;MQ=36.25;MQ0=8;MQRankSum=-7.719;QD=1.36;ReadPosRankSum=4.315;SB=-2.140e+02 GT:AD:DP:GQ:PL 0/1:373,96:470:99:667,0,6727 chrVII 1082358 . G A 4821.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.235;DP=494;Dels=0.00;FS=15.553;HaplotypeScore=25.4795;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=22;MQRankSum=-1.405;QD=9.76;ReadPosRankSum=3.653;SB=-1.727e+03 GT:AD:DP:GQ:PL 0/1:63,431:494:99:4821,0,238 chrVII 1082371 . T C 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.467;DP=487;Dels=0.00;FS=74.500;HaplotypeScore=49.2088;MLEAC=1;MLEAF=0.500;MQ=29.25;MQ0=21;MQRankSum=3.710;QD=0.25;ReadPosRankSum=0.921;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:440,46:487:99:152,0,4619 chrVII 1082375 . G T 369.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;DP=473;Dels=0.00;FS=11.539;HaplotypeScore=44.3475;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=21;MQRankSum=2.788;QD=0.78;ReadPosRankSum=4.315;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:407,61:473:99:399,0,3964 chrVII 1082378 . C T 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.470;DP=459;Dels=0.00;FS=64.043;HaplotypeScore=45.9248;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=19;MQRankSum=4.471;QD=0.45;ReadPosRankSum=4.749;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:413,42:459:99:235,0,4023 chrVII 1082379 . C T 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.238;DP=454;Dels=0.00;FS=64.219;HaplotypeScore=43.5588;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=19;MQRankSum=4.320;QD=0.41;ReadPosRankSum=5.094;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:410,42:454:99:214,0,3932 chrVII 1082380 . G A 423.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.741;DP=452;Dels=0.00;FS=14.426;HaplotypeScore=44.1628;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=19;MQRankSum=3.816;QD=0.94;ReadPosRankSum=6.043;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:391,61:452:99:453,0,3886 chrVII 1082419 . G A 2516.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.020;DP=262;Dels=0.00;FS=24.728;HaplotypeScore=23.6057;MLEAC=1;MLEAF=0.500;MQ=29.08;MQ0=17;MQRankSum=-3.747;QD=9.60;ReadPosRankSum=1.058;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:51,211:262:99:2546,0,333 chrVII 1082455 . C G 777 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.031;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;MQRankSum=2.166;QD=16.53;ReadPosRankSum=2.824;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:7,40:47:93:810,93,0 chrVII 1082456 . T C 756 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=16.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:90:789,90,0 chrVII 1082458 . A T 762 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=1.559;QD=16.93;ReadPosRankSum=1.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,39:45:90:795,90,0 chrVII 1082459 . A G 764 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.182;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;MQRankSum=2.404;QD=17.36;ReadPosRankSum=2.145;SB=-6.518e-03 GT:AD:DP:GQ:PL 1/1:5,39:44:90:797,90,0 chrVII 1082463 . A G 737 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;MQRankSum=2.034;QD=16.75;ReadPosRankSum=2.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,39:44:90:770,90,0 chrVII 1082464 . A G 744 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.183;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;MQRankSum=2.367;QD=16.91;ReadPosRankSum=2.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,39:44:90:777,90,0 chrVII 1082467 . A G 745 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=2.488;QD=17.33;ReadPosRankSum=2.321;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,39:43:90:778,90,0 chrVII 1082469 . A T 765 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=19.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:90:798,90,0 chrVII 1082471 . C A 790 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=19.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:41:90:823,90,0 chrVII 1082473 . A G 765 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.030;DP=42;Dels=0.00;FS=13.118;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;MQRankSum=2.209;QD=18.21;ReadPosRankSum=2.149;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,39:42:90:798,90,0 chrVII 1082476 . A G 694 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=46;Dels=0.00;FS=39.971;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=1;MQRankSum=3.689;QD=15.09;ReadPosRankSum=3.723;SB=-6.563e-03 GT:AD:DP:GQ:PL 1/1:7,39:46:53:727,53,0 chrVII 1082477 . C T 833 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=1;QD=17.72;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:96:866,96,0 chrVII 1082479 . G A 699 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=48;Dels=0.00;FS=55.837;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=1;MQRankSum=4.175;QD=14.56;ReadPosRankSum=4.260;SB=-9.976e-03 GT:AD:DP:GQ:PL 1/1:9,39:48:34:732,34,0 chrVII 1082481 . T C 695 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=51;Dels=0.00;FS=76.585;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=1;MQRankSum=4.754;QD=13.63;ReadPosRankSum=4.965;SB=-9.976e-03 GT:AD:DP:GQ:PL 1/1:12,39:51:34:728,34,0 chrVII 1082484 . C T 639.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.100;DP=53;Dels=0.00;FS=67.114;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=1;MQRankSum=4.269;QD=12.06;ReadPosRankSum=5.241;SB=-3.229e+00 GT:AD:DP:GQ:PL 0/1:14,39:53:10:669,0,10 chrVII 1082485 . C T 618.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.896;DP=53;Dels=0.00;FS=71.408;HaplotypeScore=2.7896;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=1;MQRankSum=4.075;QD=11.66;ReadPosRankSum=5.185;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:13,39:53:11:648,0,11 chrVII 1082486 . A C 630.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;DP=56;Dels=0.00;FS=60.263;HaplotypeScore=5.3971;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=1;MQRankSum=3.882;QD=11.25;ReadPosRankSum=5.639;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:17,39:56:56:660,0,56 chrVII 1082498 . G T 987.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;DP=244;Dels=0.00;FS=114.434;HaplotypeScore=5.2699;MLEAC=1;MLEAF=0.500;MQ=26.22;MQ0=1;MQRankSum=3.158;QD=4.05;ReadPosRankSum=-4.358;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,225:244:48:1017,0,48 chrVII 1082502 . T C 1093.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.772;DP=263;Dels=0.00;FS=117.588;HaplotypeScore=3.4799;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=1;MQRankSum=3.005;QD=4.16;ReadPosRankSum=-4.640;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:18,245:263:34:1123,0,34 chrVII 1082505 . A C 1144.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.959;DP=277;Dels=0.00;FS=116.644;HaplotypeScore=4.6380;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=1;MQRankSum=2.647;QD=4.13;ReadPosRankSum=-4.424;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,258:277:55:1174,0,55 chrVII 1082508 . C T 1588 SnpCluster AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=3.6296;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=1;QD=5.53;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,287:287:99:1621,189,0 chrVII 1082514 . C T 1358 SnpCluster AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=54.0345;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=1;QD=4.51;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,301:301:99:1391,162,0 chrVII 1082522 . T C 66.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.658;DP=310;Dels=0.00;FS=118.075;HaplotypeScore=41.1650;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=1;MQRankSum=-2.019;QD=0.21;ReadPosRankSum=4.927;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:289,20:310:96:96,0,716 chrVII 1082524 . C T 460.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;DP=303;Dels=0.00;FS=48.459;HaplotypeScore=41.1494;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=1;MQRankSum=3.837;QD=1.52;ReadPosRankSum=-1.987;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,212:303:99:490,0,241 chrVII 1082568 . T C 760.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DP=219;Dels=0.00;FS=52.319;HaplotypeScore=27.0779;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=1;MQRankSum=0.613;QD=3.47;ReadPosRankSum=0.848;SB=-1.885e+01 GT:AD:DP:GQ:PL 0/1:23,194:219:90:790,0,90 chrVII 1082574 . C G 577.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.798;DP=201;Dels=0.00;FS=1.652;HaplotypeScore=23.1715;MLEAC=1;MLEAF=0.500;MQ=20.18;MQ0=0;MQRankSum=0.030;QD=2.87;ReadPosRankSum=0.297;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:65,136:201:99:607,0,237 chrVII 1082585 . A G 206.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.396;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=18.37;MQ0=0;MQRankSum=-1.000;QD=2.17;ReadPosRankSum=0.087;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:20,75:95:99:236,0,110 chrVII 1082586 . C G 206.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.543;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=18.29;MQ0=0;MQRankSum=-1.036;QD=2.24;ReadPosRankSum=-1.086;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:17,75:92:99:236,0,111 chrVII 1082587 . A G 424 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=0;MQRankSum=0.022;QD=4.61;ReadPosRankSum=2.924;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:3,89:92:57:457,57,0 chrVII 1082592 . G A 465 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9384;MLEAC=2;MLEAF=1.00;MQ=18.49;MQ0=0;QD=5.05;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:60:498,60,0 chrVII 1082595 . C G 206.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.604;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9384;MLEAC=1;MLEAF=0.500;MQ=18.49;MQ0=0;MQRankSum=-1.300;QD=2.24;ReadPosRankSum=-1.913;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:15,77:92:99:236,0,116 chrVII 1082599 . T G 84.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8768;MLEAC=1;MLEAF=0.500;MQ=18.37;MQ0=0;MQRankSum=0.665;QD=0.99;ReadPosRankSum=2.753;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:72,13:85:99:114,0,239 chrVII 1082601 . A C 88.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8768;MLEAC=1;MLEAF=0.500;MQ=18.52;MQ0=0;MQRankSum=0.624;QD=1.09;ReadPosRankSum=2.490;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:68,13:81:99:118,0,225 chrVII 1082607 . A G 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;DP=64;Dels=0.00;FS=2.334;HaplotypeScore=5.8768;MLEAC=1;MLEAF=0.500;MQ=18.74;MQ0=0;MQRankSum=-0.083;QD=0.73;ReadPosRankSum=0.749;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,10:64:77:77,0,214 chrVII 1082622 . A C 223 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=0;QD=8.26;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:256,33,0 chrVII 1082625 . G T 132.06 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=7.77;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:21:165,21,0 chrVII 1082626 . C T 134.06 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=7.89;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:21:167,21,0 chrVII 1082627 . T C 130.06 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=7.65;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:21:163,21,0 chrVII 1082629 . C T 138.06 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=8.12;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:21:171,21,0 chrVII 1082633 . T G 137.06 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=0;QD=7.61;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:170,21,0 chrVII 1082639 . G C 133.06 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=0;QD=7.00;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,18:19:21:166,21,0 chrVII 1082646 . A G 85.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.756;DP=18;Dels=0.00;FS=3.214;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=0;MQRankSum=-1.756;QD=4.74;ReadPosRankSum=-1.475;SB=-8.826e+01 GT:AD:DP:GQ:PL 1/1:2,16:18:15:118,15,0 chrVII 1082681 . C A 86.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=14;Dels=0.00;FS=3.522;HaplotypeScore=3.9775;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=5;MQRankSum=-0.751;QD=6.16;ReadPosRankSum=-0.751;SB=-5.730e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:15:119,15,0 chrVII 1082688 . T C 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;DP=14;Dels=0.00;FS=10.792;HaplotypeScore=1.9880;MLEAC=1;MLEAF=0.500;MQ=15.82;MQ0=5;MQRankSum=0.067;QD=3.50;ReadPosRankSum=-1.666;SB=-2.151e+01 GT:AD:DP:GQ:PL 0/1:7,7:14:25:79,0,25 chrVII 1082697 . A G 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;DP=16;Dels=0.00;FS=12.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.72;MQ0=5;MQRankSum=-0.825;QD=3.00;ReadPosRankSum=-2.239;SB=-2.051e+01 GT:AD:DP:GQ:PL 0/1:7,9:16:25:78,0,25 chrVII 1082769 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.53;MQ0=1;QD=1.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,6:7:6:43,6,0 chrVII 1082800 . A G 558.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;DP=65;Dels=0.00;FS=8.115;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=6;MQRankSum=2.575;QD=8.58;ReadPosRankSum=-2.638;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:28,36:65:99:588,0,179 chrVII 1082801 . T C 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.539;DP=66;Dels=0.00;FS=8.385;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=6;MQRankSum=-2.624;QD=2.45;ReadPosRankSum=2.834;SB=-7.355e+01 GT:AD:DP:GQ:PL 0/1:38,28:66:99:192,0,636 chrVII 1082819 . T C 1083 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=6;QD=16.41;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1116,129,0 chrVII 1082858 . G T 687.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.332;DP=66;Dels=0.00;FS=20.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=6;MQRankSum=0.008;QD=10.41;ReadPosRankSum=-0.159;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:19,47:66:99:717,0,187 chrVII 1082883 . A G 204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=18;Dels=0.00;FS=12.430;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=3;MQRankSum=1.783;QD=11.33;ReadPosRankSum=1.953;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:2,16:18:27:237,27,0 chrVII 1082949 . T C 379 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=0;QD=16.48;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:54:412,54,0 chrVII 1082972 . G A 502 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.18;MQ0=0;QD=17.31;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:535,69,0 chrVII 1082976 . T A 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;DP=30;Dels=0.00;FS=48.131;HaplotypeScore=2.8735;MLEAC=1;MLEAF=0.500;MQ=22.44;MQ0=0;MQRankSum=0.453;QD=0.35;ReadPosRankSum=-0.815;SB=-6.515e-03 GT:AD:DP:GQ:PL 0/1:21,9:30:40:40,0,363 chrVII 1082981 . T C 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DP=35;Dels=0.00;FS=65.330;HaplotypeScore=3.8313;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=0;MQRankSum=1.229;QD=1.49;ReadPosRankSum=-2.239;SB=-6.246e-03 GT:AD:DP:GQ:PL 0/1:21,14:35:82:82,0,360 chrVII 1082985 . A G 578 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.421;DP=37;Dels=0.00;FS=13.341;HaplotypeScore=4.7892;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=0;MQRankSum=3.532;QD=15.62;ReadPosRankSum=0.289;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:5,32:37:78:611,78,0 chrVII 1082991 . G A 630 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.7892;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=15.37;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:663,81,0 chrVII 1082995 . G T 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;DP=43;Dels=0.00;FS=60.568;HaplotypeScore=4.7892;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=0;MQRankSum=1.702;QD=1.70;ReadPosRankSum=-0.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,17:43:99:103,0,426 chrVII 1082999 . A G 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DP=45;Dels=0.00;FS=53.982;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=0;MQRankSum=1.697;QD=1.36;ReadPosRankSum=0.246;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,17:45:91:91,0,439 chrVII 1083002 . G T 425 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;QD=10.12;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,25:42:60:458,60,0 chrVII 1083004 . G C 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;DP=42;Dels=0.00;FS=48.692;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=0;MQRankSum=1.666;QD=1.74;ReadPosRankSum=0.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,17:42:99:103,0,378 chrVII 1083007 . A G 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.625;DP=59;Dels=0.00;FS=77.300;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.20;MQ0=0;MQRankSum=2.171;QD=2.10;ReadPosRankSum=-2.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,34:59:99:154,0,378 chrVII 1083015 . G A 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.748;DP=64;Dels=0.00;FS=78.387;HaplotypeScore=1.6229;MLEAC=1;MLEAF=0.500;MQ=24.22;MQ0=0;MQRankSum=2.422;QD=2.17;ReadPosRankSum=-2.017;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,37:63:99:169,0,368 chrVII 1083025 . T C 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.203;DP=66;Dels=0.00;FS=82.069;HaplotypeScore=5.4165;MLEAC=1;MLEAF=0.500;MQ=24.38;MQ0=0;MQRankSum=2.080;QD=1.56;ReadPosRankSum=2.014;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,40:66:99:133,0,378 chrVII 1083041 . G T 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;DP=51;Dels=0.00;FS=2.450;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=0;MQRankSum=0.368;QD=0.55;ReadPosRankSum=2.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,10:51:58:58,0,242 chrVII 1083042 . A G 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.353;DP=51;Dels=0.00;FS=2.450;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=0;MQRankSum=0.534;QD=0.49;ReadPosRankSum=2.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,10:51:55:55,0,253 chrVII 1083057 . A G 310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;MQRankSum=0.817;QD=6.60;ReadPosRankSum=2.345;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:42:343,42,0 chrVII 1083065 . A G 286 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.36;MQ0=0;QD=6.81;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:39:319,39,0 chrVII 1083071 . C T 233 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=0;QD=6.13;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:33:266,33,0 chrVII 1083106 . A C 59.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=0;QD=5.41;SB=-2.739e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:92,12,0 chrVII 1083121 . C T 86.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=0;QD=3.92;SB=-1.422e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:15:119,15,0 chrVII 1083127 . A G 104.13 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=0;QD=2.81;SB=-2.101e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:18:137,18,0 chrVII 1083131 . A T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DP=40;Dels=0.00;FS=47.520;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.71;MQ0=0;MQRankSum=-1.060;QD=0.63;ReadPosRankSum=-0.969;SB=-3.931e+00 GT:AD:DP:GQ:PL 0/1:11,29:40:55:55,0,77 chrVII 1083136 . A G 132.06 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;QD=3.14;SB=-2.111e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:21:165,21,0 chrVII 1083137 . T C 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.320;DP=42;Dels=0.00;FS=49.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=0;MQRankSum=1.230;QD=0.93;ReadPosRankSum=1.202;SB=1.75 GT:AD:DP:GQ:PL 0/1:31,11:42:55:69,0,55 chrVII 1083143 . T A 156.03 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=0;QD=3.25;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:24:189,24,0 chrVII 1083148 . T C 194 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.27;MQ0=0;QD=3.88;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:30:227,30,0 chrVII 1083172 . A G 169.01 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.6566;MLEAC=2;MLEAF=1.00;MQ=19.80;MQ0=1;QD=3.31;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:27:202,27,0 chrVII 1083181 . C T 174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.6566;MLEAC=2;MLEAF=1.00;MQ=19.57;MQ0=1;MQRankSum=0.530;QD=3.48;ReadPosRankSum=0.389;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:27:207,27,0 chrVII 1083193 . G A 81.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;DP=47;Dels=0.00;FS=47.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.27;MQ0=0;MQRankSum=0.271;QD=1.72;ReadPosRankSum=1.507;SB=-3.502e+01 GT:AD:DP:GQ:PL 0/1:19,28:47:25:111,0,25 chrVII 1083199 . T A 81.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DP=38;Dels=0.00;FS=43.001;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=0;MQRankSum=-0.833;QD=2.13;ReadPosRankSum=3.114;SB=-9.980e+00 GT:AD:DP:GQ:PL 0/1:18,20:38:25:111,0,25 chrVII 1083201 . C G 79.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=38;Dels=0.00;FS=43.001;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=0;MQRankSum=-0.775;QD=2.08;ReadPosRankSum=2.967;SB=-9.980e+00 GT:AD:DP:GQ:PL 0/1:18,20:38:25:109,0,25 chrVII 1083229 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=0;QD=0.71;SB=-1.368e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:6:43,6,0 chrVII 1083231 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=0;QD=0.71;SB=-1.148e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:6:43,6,0 chrVII 1083232 . A T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=17;Dels=0.00;FS=30.134;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=0;MQRankSum=-0.264;QD=0.71;ReadPosRankSum=1.845;SB=-8.757e+00 GT:AD:DP:GQ:PL 1/1:5,12:17:6:43,6,0 chrVII 1083235 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=0;QD=0.93;SB=-4.476e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:43,6,0 chrVII 1083237 . G T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=0;QD=0.93;SB=-4.476e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:43,6,0 chrVII 1083238 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=0;QD=0.93;SB=-4.476e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:43,6,0 chrVII 1083240 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=0;QD=0.93;SB=-4.476e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:43,6,0 chrVII 1083249 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=0;QD=1.27;SB=-6.598e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:65,9,0 chrVII 1083251 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=0;QD=1.27;SB=-6.598e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:65,9,0 chrVII 1083253 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.81;MQ0=0;MQRankSum=-1.472;QD=1.18;ReadPosRankSum=2.275;SB=-6.598e+01 GT:AD:DP:GQ:PL 1/1:2,26:28:9:65,9,0 chrVII 1083262 . T A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;DP=40;Dels=0.00;FS=5.067;HaplotypeScore=10.3876;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=0;MQRankSum=-1.036;QD=0.50;ReadPosRankSum=3.919;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:9,31:40:33:50,0,33 chrVII 1083282 . T C 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928;DP=49;Dels=0.00;FS=10.391;HaplotypeScore=8.7304;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=0;MQRankSum=-1.450;QD=0.80;ReadPosRankSum=2.379;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:14,35:49:31:69,0,31 chrVII 1083285 . G C 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;DP=49;Dels=0.00;FS=10.391;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=0;MQRankSum=-1.715;QD=0.80;ReadPosRankSum=1.317;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:14,35:49:30:69,0,30 chrVII 1083299 . G A 81.26 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=21.68;MQ0=1;QD=1.73;SB=-1.133e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:15:114,15,0 chrVII 1083300 . C G,T 39.22 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.68;MQ0=1;QD=0.83;SB=-9.922e+01 GT:AD:DP:GQ:PL 1/2:0,33,14:47:33:98,42,33,56,0,50 chrVII 1083301 . G T 81.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=21.13;MQ0=1;MQRankSum=-0.577;QD=1.56;ReadPosRankSum=-0.306;SB=-1.373e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:15:114,15,0 chrVII 1083308 . A G 149.06 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;DP=67;Dels=0.00;FS=7.786;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=21.17;MQ0=3;MQRankSum=1.305;QD=2.22;ReadPosRankSum=-0.627;SB=-1.791e+02 GT:AD:DP:GQ:PL 0/1:25,41:67:16:179,0,16 chrVII 1083321 . G A 375.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.151;DP=92;Dels=0.00;FS=1.794;HaplotypeScore=6.2000;MLEAC=1;MLEAF=0.500;MQ=20.82;MQ0=8;MQRankSum=1.326;QD=4.08;ReadPosRankSum=0.806;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:39,53:92:99:405,0,237 chrVII 1083340 . C G 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;DP=93;Dels=0.00;FS=20.201;HaplotypeScore=12.6776;MLEAC=1;MLEAF=0.500;MQ=19.29;MQ0=20;MQRankSum=-1.864;QD=0.11;ReadPosRankSum=1.222;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,21:93:40:40,0,549 chrVII 1083349 . C T 340.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.507;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=12.6776;MLEAC=1;MLEAF=0.500;MQ=19.21;MQ0=20;MQRankSum=1.729;QD=4.10;ReadPosRankSum=1.326;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:40,43:83:99:370,0,239 chrVII 1083361 . T C 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=77;Dels=0.00;FS=2.643;HaplotypeScore=13.6062;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=20;MQRankSum=-0.380;QD=1.51;ReadPosRankSum=2.716;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:54,23:77:99:146,0,412 chrVII 1083364 . T C 178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DP=77;Dels=0.00;FS=1.165;HaplotypeScore=26.2293;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=20;MQRankSum=4.123;QD=2.31;ReadPosRankSum=-1.151;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:59,18:77:99:208,0,350 chrVII 1083374 . G A 116.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.705;DP=75;Dels=0.00;FS=1.214;HaplotypeScore=26.0347;MLEAC=1;MLEAF=0.500;MQ=18.66;MQ0=20;MQRankSum=-0.882;QD=1.55;ReadPosRankSum=3.972;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:53,22:75:99:146,0,400 chrVII 1083379 . T C 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.326;DP=77;Dels=0.00;FS=5.821;HaplotypeScore=26.0347;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=20;MQRankSum=-4.678;QD=3.79;ReadPosRankSum=2.361;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:21,56:77:99:322,0,292 chrVII 1083382 . T G 107.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.270;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=26.0347;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=20;MQRankSum=-0.789;QD=1.39;ReadPosRankSum=4.022;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:55,22:77:99:137,0,495 chrVII 1083423 . G A 69.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=17.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:102,12,0 chrVII 1083425 . G A 69.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=17.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:102,12,0 chrVII 1083426 . G A 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=18.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:105,12,0 chrVII 1083430 . G A 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=12.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:6:12:105,12,0 chrVII 1083434 . G A 267 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=12.71;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:39:300,39,0 chrVII 1083467 . T C 1029 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=66;Dels=0.00;FS=12.988;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.48;MQ0=0;MQRankSum=0.000;QD=15.59;ReadPosRankSum=2.894;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1062,137,0 chrVII 1083474 . A G 1093 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=19.68;MQ0=0;QD=15.18;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1126,146,0 chrVII 1083477 . A T 1151 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=19.61;MQ0=0;QD=15.55;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1184,152,0 chrVII 1083532 . T C 606.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.893;DP=66;Dels=0.00;FS=1.690;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=20.44;MQ0=2;MQRankSum=0.821;QD=9.18;ReadPosRankSum=-0.774;SB=-3.019e+02 GT:AD:DP:GQ:PL 1/1:7,57:66:29:639,29,0 chrVII 1083536 . G A 509.41 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.967;DP=51;Dels=0.00;FS=1.692;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.23;MQ0=2;MQRankSum=0.442;QD=9.99;ReadPosRankSum=-0.015;SB=-2.802e+02 GT:AD:DP:GQ:PL 1/1:7,44:51:13:542,13,0 chrVII 1083540 . G A 440.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.029;DP=42;Dels=0.00;FS=1.676;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.55;MQ0=2;MQRankSum=0.748;QD=10.49;ReadPosRankSum=1.424;SB=-2.174e+02 GT:AD:DP:GQ:PL 1/1:8,34:42:4:471,4,0 chrVII 1083567 . A C 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;DP=39;Dels=0.00;FS=12.030;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.96;MQ0=2;MQRankSum=3.152;QD=1.46;ReadPosRankSum=0.433;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,6:39:87:87,0,272 chrVII 1083568 . T G 425 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.27;MQ0=2;QD=12.14;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:458,57,0 chrVII 1083570 . A T 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.052;DP=34;Dels=0.00;FS=12.127;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=2;MQRankSum=2.631;QD=2.44;ReadPosRankSum=-0.555;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,6:34:99:113,0,213 chrVII 1083573 . A G 339 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=2;MQRankSum=-0.418;QD=10.94;ReadPosRankSum=1.614;SB=-6.601e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:45:372,45,0 chrVII 1083575 . G A 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DP=30;Dels=0.00;FS=16.251;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=20.27;MQ0=2;MQRankSum=3.163;QD=2.77;ReadPosRankSum=-1.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,6:30:99:113,0,170 chrVII 1083579 . T C 133.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;DP=31;Dels=0.00;FS=10.335;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=20.29;MQ0=1;MQRankSum=-1.586;QD=4.29;ReadPosRankSum=2.415;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:8,22:31:99:163,0,112 chrVII 1083580 . G A 87.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.942;DP=31;Dels=0.00;FS=19.831;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=20.29;MQ0=1;MQRankSum=2.550;QD=2.81;ReadPosRankSum=-1.814;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,7:31:99:117,0,174 chrVII 1083586 . A G 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;DP=54;Dels=0.00;FS=43.065;HaplotypeScore=21.4289;MLEAC=1;MLEAF=0.500;MQ=21.57;MQ0=1;MQRankSum=2.547;QD=1.54;ReadPosRankSum=1.329;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,8:54:99:113,0,152 chrVII 1083597 . T A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;DP=57;Dels=0.00;FS=42.769;HaplotypeScore=50.8132;MLEAC=1;MLEAF=0.500;MQ=20.96;MQ0=1;MQRankSum=2.265;QD=0.23;ReadPosRankSum=-0.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,6:57:43:43,0,201 chrVII 1083612 . T C 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;DP=53;Dels=0.00;FS=35.680;HaplotypeScore=11.1634;MLEAC=1;MLEAF=0.500;MQ=20.69;MQ0=1;MQRankSum=1.940;QD=1.42;ReadPosRankSum=-0.261;SB=0.101 GT:AD:DP:GQ:PL 0/1:22,31:53:98:105,0,98 chrVII 1083619 . G A 180.01 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5362;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=0;QD=3.75;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:27:213,27,0 chrVII 1083622 . A G 138.06 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.1205;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=0;QD=4.31;SB=-9.507e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:21:171,21,0 chrVII 1083623 . T C 135.06 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=0;QD=4.22;SB=-9.407e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:21:168,21,0 chrVII 1083624 . A T 160.03 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=0;QD=5.00;SB=-9.904e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:24:193,24,0 chrVII 1083625 . G C 159.03 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=0;QD=4.97;SB=-9.504e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:24:192,24,0 chrVII 1083634 . T G 159.03 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.1697;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=0;QD=4.97;SB=-9.504e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:24:192,24,0 chrVII 1083635 . T C 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DP=32;Dels=0.00;FS=8.243;HaplotypeScore=9.1697;MLEAC=1;MLEAF=0.500;MQ=20.17;MQ0=0;MQRankSum=0.377;QD=1.44;ReadPosRankSum=-2.179;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:9,23:32:68:76,0,68 chrVII 1083636 . G C 158.03 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.1697;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=0;QD=4.94;SB=-9.704e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:24:191,24,0 chrVII 1083638 . G A 163.03 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.1697;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=0;QD=5.09;SB=-9.704e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:24:196,24,0 chrVII 1083639 . T A 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;DP=57;Dels=0.00;FS=16.500;HaplotypeScore=33.5828;MLEAC=1;MLEAF=0.500;MQ=20.87;MQ0=0;MQRankSum=-0.449;QD=0.74;ReadPosRankSum=3.688;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:48,9:57:59:72,0,59 chrVII 1083640 . G A 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DP=62;Dels=0.00;FS=22.277;HaplotypeScore=51.5400;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=0;MQRankSum=0.778;QD=0.34;ReadPosRankSum=3.043;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,13:62:51:51,0,93 chrVII 1083648 . G T 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.454;DP=69;Dels=0.00;FS=21.731;HaplotypeScore=23.2430;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=0;MQRankSum=0.007;QD=0.57;ReadPosRankSum=0.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,14:69:69:69,0,77 chrVII 1083650 . A C 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;DP=69;Dels=0.00;FS=21.731;HaplotypeScore=124.4540;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=0;MQRankSum=0.022;QD=0.55;ReadPosRankSum=0.813;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,14:69:68:68,0,75 chrVII 1083651 . T G 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.692;DP=69;Dels=0.00;FS=21.731;HaplotypeScore=89.7483;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=0;MQRankSum=0.291;QD=0.52;ReadPosRankSum=1.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,14:69:66:66,0,79 chrVII 1083654 . T A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;DP=69;Dels=0.00;FS=15.700;HaplotypeScore=135.8974;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=0;MQRankSum=-0.287;QD=0.57;ReadPosRankSum=1.307;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,14:69:69:69,0,81 chrVII 1083655 . T A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;DP=70;Dels=0.00;FS=21.664;HaplotypeScore=149.0774;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=0;MQRankSum=0.756;QD=0.56;ReadPosRankSum=1.490;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,14:70:69:69,0,77 chrVII 1083662 . A G 38.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.625;DP=69;Dels=0.00;FS=26.288;HaplotypeScore=181.2057;MLEAC=1;MLEAF=0.500;MQ=20.61;MQ0=0;MQRankSum=-2.129;QD=0.55;ReadPosRankSum=2.009;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:31,38:69:10:68,0,10 chrVII 1083664 . G A 61.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.469;DP=67;Dels=0.00;FS=5.581;HaplotypeScore=135.6838;MLEAC=1;MLEAF=0.500;MQ=20.30;MQ0=0;MQRankSum=0.828;QD=0.92;ReadPosRankSum=2.831;SB=-2.274e+02 GT:AD:DP:GQ:PL 0/1:19,48:67:7:91,0,7 chrVII 1083667 . G C 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=67;Dels=0.00;FS=36.886;HaplotypeScore=125.6250;MLEAC=1;MLEAF=0.500;MQ=20.30;MQ0=0;MQRankSum=0.404;QD=0.42;ReadPosRankSum=-0.537;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:51,16:67:33:58,0,33 chrVII 1083668 . A G 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.081;DP=67;Dels=0.00;FS=36.886;HaplotypeScore=125.6250;MLEAC=1;MLEAF=0.500;MQ=20.30;MQ0=0;MQRankSum=0.007;QD=0.42;ReadPosRankSum=-1.066;SB=-7.384e-03 GT:AD:DP:GQ:PL 0/1:51,16:67:34:58,0,34 chrVII 1083697 . A G 79.28 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=12.9124;MLEAC=1;MLEAF=0.500;MQ=17.74;MQ0=0;QD=2.64;SB=-1.042e+02 GT:AD:DP:GQ:PL 1/1:0,16:30:15:112,15,0 chrVII 1083705 . A C 102.13 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.3202;MLEAC=2;MLEAF=1.00;MQ=14.91;MQ0=2;QD=3.19;SB=-7.014e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:18:135,18,0 chrVII 1083710 . A G 81.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;DP=45;Dels=0.00;FS=12.585;HaplotypeScore=9.4959;MLEAC=1;MLEAF=0.500;MQ=16.09;MQ0=2;MQRankSum=1.448;QD=1.80;ReadPosRankSum=3.239;SB=-1.203e+01 GT:AD:DP:GQ:PL 0/1:36,9:45:19:111,0,19 chrVII 1083725 . C T 376 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.6291;MLEAC=2;MLEAF=1.00;MQ=17.52;MQ0=2;QD=7.23;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:51:409,51,0 chrVII 1083735 . G A 335.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DP=66;Dels=0.00;FS=54.291;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=18.32;MQ0=4;MQRankSum=1.418;QD=5.08;ReadPosRankSum=-0.934;SB=-1.902e+01 GT:AD:DP:GQ:PL 0/1:15,51:66:63:365,0,63 chrVII 1083765 . C T 584 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=17;QD=6.42;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:75:617,75,0 chrVII 1083769 . A G 839 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=122;Dels=0.00;FS=4.453;HaplotypeScore=16.8292;MLEAC=2;MLEAF=1.00;MQ=17.38;MQ0=18;MQRankSum=0.377;QD=6.88;ReadPosRankSum=1.694;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,109:122:99:872,111,0 chrVII 1083773 . G A 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.114;DP=166;Dels=0.00;FS=120.562;HaplotypeScore=29.8492;MLEAC=1;MLEAF=0.500;MQ=18.52;MQ0=18;MQRankSum=3.126;QD=1.21;ReadPosRankSum=-4.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,22:166:99:231,0,749 chrVII 1083781 . G T 365.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.024;DP=233;Dels=0.00;FS=238.515;HaplotypeScore=44.5605;MLEAC=1;MLEAF=0.500;MQ=19.41;MQ0=19;MQRankSum=3.271;QD=1.57;ReadPosRankSum=-3.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,42:233:99:395,0,1238 chrVII 1083785 . T G 321.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.736;DP=259;Dels=0.00;FS=276.560;HaplotypeScore=59.0139;MLEAC=1;MLEAF=0.500;MQ=20.63;MQ0=19;MQRankSum=2.325;QD=1.24;ReadPosRankSum=-1.109;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:217,42:259:99:351,0,1577 chrVII 1083875 . A C 525 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=68;Dels=0.00;FS=11.663;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=19.16;MQ0=12;MQRankSum=-0.375;QD=7.72;ReadPosRankSum=2.274;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:2,66:68:63:558,63,0 chrVII 1083898 . A G 111.13 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=2;QD=12.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:18:144,18,0 chrVII 1083907 . A G 567 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.08;MQ0=2;QD=17.18;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:75:600,75,0 chrVII 1083914 . C T 909 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=2;QD=17.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:942,117,0 chrVII 1083916 . A G 897 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=2;QD=16.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:930,117,0 chrVII 1083951 . G A 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.687;DP=79;Dels=0.00;FS=11.818;HaplotypeScore=2.9452;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=3;MQRankSum=-1.368;QD=14.18;ReadPosRankSum=0.547;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1153,117,0 chrVII 1084034 . G A 231.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.638;DP=136;Dels=0.00;FS=2.604;HaplotypeScore=24.7859;MLEAC=1;MLEAF=0.500;MQ=21.19;MQ0=0;MQRankSum=-5.264;QD=1.70;ReadPosRankSum=0.085;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:46,90:136:99:261,0,454 chrVII 1084078 . G A 245.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=29.7637;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=0;MQRankSum=4.316;QD=3.83;ReadPosRankSum=-3.979;SB=-9.959e-03 GT:AD:DP:GQ:PL 0/1:35,29:64:28:275,0,28 chrVII 1084092 . C T 121.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;MQRankSum=0.612;QD=6.38;ReadPosRankSum=-1.511;SB=2.87 GT:AD:DP:GQ:PL 1/1:10,9:19:18:154,18,0 chrVIII 361 . G A 66.51 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=11.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:99,12,0 chrVIII 420 . C G 89.51 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=2;QD=12.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:12:122,12,0 chrVIII 655 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=3;QD=3.11;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,6:7:6:53,6,0 chrVIII 1569 . G A 538 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=34;Dels=0.00;FS=14.472;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=25.39;MQ0=5;MQRankSum=1.609;QD=15.82;ReadPosRankSum=0.619;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,31:34:63:571,63,0 chrVIII 1663 . A G 1964 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.068;DP=206;Dels=0.00;FS=16.682;HaplotypeScore=59.8709;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=44;MQRankSum=-0.226;QD=9.53;ReadPosRankSum=3.488;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:31,165:206:99:1997,228,0 chrVIII 1696 . A G 3536.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.826;DP=216;Dels=0.00;FS=2.524;HaplotypeScore=33.2768;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=17;MQRankSum=3.284;QD=16.37;ReadPosRankSum=2.503;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:25,174:216:99:3536,405,0 chrVIII 1735 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.529;DP=223;Dels=0.00;FS=43.472;HaplotypeScore=18.5709;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=3;MQRankSum=7.488;QD=13.86;ReadPosRankSum=6.296;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:44,178:223:99:3124,302,0 chrVIII 1754 . T C 1534 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.444;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=20.5063;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=1;MQRankSum=1.579;QD=9.13;ReadPosRankSum=4.544;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:9,155:168:99:1567,200,0 chrVIII 1758 . A C 428.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;DP=152;Dels=0.00;FS=7.065;HaplotypeScore=17.3516;MLEAC=1;MLEAF=0.500;MQ=17.71;MQ0=1;MQRankSum=3.026;QD=2.82;ReadPosRankSum=-5.101;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:121,31:152:99:458,0,227 chrVIII 1759 . G A 203.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271;DP=153;Dels=0.00;FS=13.859;HaplotypeScore=17.3516;MLEAC=1;MLEAF=0.500;MQ=17.17;MQ0=1;MQRankSum=2.167;QD=1.33;ReadPosRankSum=-4.839;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:130,23:153:99:233,0,380 chrVIII 1771 . A G 522 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=15.08;MQ0=6;QD=3.62;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:75:555,75,0 chrVIII 1780 . C A 527 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=14.52;MQ0=12;QD=3.31;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,157:159:75:560,75,0 chrVIII 1784 . C T 529 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=14.09;MQ0=17;QD=2.94;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,179:180:75:562,75,0 chrVIII 1816 . C A 1180 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.786;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=37.4152;MLEAC=2;MLEAF=1.00;MQ=13.75;MQ0=29;MQRankSum=0.828;QD=3.59;ReadPosRankSum=2.009;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:2,322:329:99:1213,155,0 chrVIII 1820 . C T 590.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.738;DP=346;Dels=0.00;FS=16.723;HaplotypeScore=32.7962;MLEAC=1;MLEAF=0.500;MQ=14.10;MQ0=33;MQRankSum=-4.843;QD=1.71;ReadPosRankSum=-1.336;SB=-6.420e+02 GT:AD:DP:GQ:PL 0/1:87,259:346:99:620,0,275 chrVIII 1835 . A G 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;DP=450;Dels=0.00;FS=18.976;HaplotypeScore=126.2922;MLEAC=1;MLEAF=0.500;MQ=14.52;MQ0=66;MQRankSum=2.141;QD=0.04;ReadPosRankSum=-6.021;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:367,83:450:46:46,0,1573 chrVIII 1846 . A G 2514 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.059;DP=500;Dels=0.00;FS=14.058;HaplotypeScore=89.5917;MLEAC=2;MLEAF=1.00;MQ=14.80;MQ0=75;MQRankSum=0.838;QD=5.03;ReadPosRankSum=-1.545;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:11,479:500:99:2547,326,0 chrVIII 1916 . T G 1402.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.219;DP=580;Dels=0.00;FS=738.686;HaplotypeScore=81.5449;MLEAC=1;MLEAF=0.500;MQ=14.39;MQ0=52;MQRankSum=7.861;QD=2.42;ReadPosRankSum=-14.213;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:456,124:580:99:1432,0,1556 chrVIII 1922 . C G 1523.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.474;DP=520;Dels=0.02;FS=756.116;HaplotypeScore=80.8485;MLEAC=1;MLEAF=0.500;MQ=14.15;MQ0=34;MQRankSum=8.399;QD=2.93;ReadPosRankSum=-9.728;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:379,131:510:99:1553,0,1068 chrVIII 1924 . G A 1565.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.097;DP=531;Dels=0.02;FS=651.899;HaplotypeScore=99.4780;MLEAC=1;MLEAF=0.500;MQ=14.02;MQ0=30;MQRankSum=8.276;QD=2.95;ReadPosRankSum=-10.327;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:360,151:521:99:1595,0,980 chrVIII 1927 . G A 3537.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=543;Dels=0.00;FS=0.000;HaplotypeScore=138.8729;MLEAC=2;MLEAF=1.00;MQ=13.39;MQ0=25;QD=6.51;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,536:543:99:3537,471,0 chrVIII 1930 . A G 672.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;DP=616;Dels=0.00;FS=520.734;HaplotypeScore=117.9927;MLEAC=1;MLEAF=0.500;MQ=12.97;MQ0=27;MQRankSum=-9.283;QD=1.09;ReadPosRankSum=2.048;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:310,298:616:99:702,0,1891 chrVIII 2025 . A T 1446 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.079;DP=708;DS;Dels=0.00;FS=8.659;HaplotypeScore=22.0209;MLEAC=2;MLEAF=1.00;MQ=11.75;MQ0=52;MQRankSum=2.526;QD=2.04;ReadPosRankSum=3.346;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:4,704:708:99:1479,197,0 chrVIII 4844 . C T 39.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=0;QD=7.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:72,9,0 chrVIII 4856 . G A 43.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=0;QD=8.79;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:76,9,0 chrVIII 4878 . G A 42.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=0;QD=8.59;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrVIII 4882 . A T 43.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=0;QD=8.79;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:76,9,0 chrVIII 4891 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=0;QD=8.19;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:73,9,0 chrVIII 5043 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.80;MQ0=0;MQRankSum=1.108;QD=0.44;ReadPosRankSum=3.168;SB=-1.604e+00 GT:AD:DP:GQ:PL 1/1:8,35:43:6:50,6,0 chrVIII 5045 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.80;MQ0=0;QD=0.46;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,43:43:6:51,6,0 chrVIII 5073 . A G 63.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.773;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=27.1016;MLEAC=2;MLEAF=1.00;MQ=17.51;MQ0=0;MQRankSum=5.097;QD=0.87;ReadPosRankSum=-4.026;SB=-5.213e-01 GT:AD:DP:GQ:PL 1/1:17,56:73:12:96,12,0 chrVIII 5211 . C T 233.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DP=37;Dels=0.00;FS=62.932;HaplotypeScore=12.0105;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=6;MQRankSum=2.668;QD=6.30;ReadPosRankSum=-1.206;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:21,16:37:91:263,0,91 chrVIII 5213 . A T 253.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;DP=47;Dels=0.00;FS=66.965;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=6;MQRankSum=0.907;QD=5.38;ReadPosRankSum=-4.049;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,31:47:96:283,0,96 chrVIII 5214 . A C 256.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.297;DP=48;Dels=0.00;FS=62.327;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=6;MQRankSum=1.031;QD=5.33;ReadPosRankSum=-3.702;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,32:48:94:286,0,94 chrVIII 5232 . C T 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;DP=122;Dels=0.00;FS=46.328;HaplotypeScore=47.9440;MLEAC=1;MLEAF=0.500;MQ=17.81;MQ0=9;MQRankSum=2.508;QD=0.48;ReadPosRankSum=3.346;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:105,17:122:88:88,0,471 chrVIII 5241 . T C 694 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.910;DP=146;Dels=0.00;FS=1.368;HaplotypeScore=28.0462;MLEAC=2;MLEAF=1.00;MQ=17.13;MQ0=11;MQRankSum=0.503;QD=4.75;ReadPosRankSum=4.765;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:14,132:146:64:727,64,0 chrVIII 5298 . C T 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.140;DP=362;Dels=0.00;FS=21.831;HaplotypeScore=37.5219;MLEAC=1;MLEAF=0.500;MQ=14.78;MQ0=8;MQRankSum=2.133;QD=0.26;ReadPosRankSum=1.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:335,25:362:99:125,0,468 chrVIII 5337 . C T 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.787;DP=224;Dels=0.00;FS=6.573;HaplotypeScore=22.9601;MLEAC=1;MLEAF=0.500;MQ=13.17;MQ0=4;MQRankSum=5.082;QD=0.46;ReadPosRankSum=1.518;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,10:224:99:134,0,191 chrVIII 5338 . C T 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.700;DP=222;Dels=0.00;FS=6.596;HaplotypeScore=21.6953;MLEAC=1;MLEAF=0.500;MQ=13.22;MQ0=3;MQRankSum=5.077;QD=0.47;ReadPosRankSum=1.467;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,10:222:99:134,0,189 chrVIII 5379 . T A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=5.7332;MLEAC=2;MLEAF=1.00;MQ=18.84;MQ0=1;QD=1.98;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,3:8:6:47,6,0 chrVIII 5390 . G A 37.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=17.61;MQ0=4;QD=3.80;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:70,9,0 chrVIII 5404 . C T 63.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.143;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=17.02;MQ0=7;MQRankSum=1.932;QD=3.53;ReadPosRankSum=2.181;SB=3.28 GT:AD:DP:GQ:PL 1/1:6,12:18:12:96,12,0 chrVIII 5423 . C T 94.26 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=14.33;MQ0=12;QD=2.55;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:15:127,15,0 chrVIII 5434 . A G 116.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.603;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.4880;MLEAC=2;MLEAF=1.00;MQ=14.54;MQ0=12;MQRankSum=2.131;QD=2.70;ReadPosRankSum=0.603;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:3,40:43:18:149,18,0 chrVIII 5447 . T C 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9354;MLEAC=1;MLEAF=0.500;MQ=14.36;MQ0=12;MQRankSum=3.361;QD=0.85;ReadPosRankSum=0.018;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:43,11:54:57:76,0,57 chrVIII 5477 . C T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.538;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.7845;MLEAC=1;MLEAF=0.500;MQ=12.46;MQ0=11;MQRankSum=0.652;QD=0.29;ReadPosRankSum=4.645;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,16:42:41:42,0,41 chrVIII 5479 . T A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.7845;MLEAC=1;MLEAF=0.500;MQ=12.46;MQ0=11;MQRankSum=0.929;QD=0.27;ReadPosRankSum=4.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,16:42:41:41,0,43 chrVIII 5481 . C T 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.7929;MLEAC=1;MLEAF=0.500;MQ=12.61;MQ0=10;MQRankSum=0.353;QD=0.28;ReadPosRankSum=3.970;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,16:41:40:41,0,40 chrVIII 5485 . C G 24.23 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=12.39;MQ0=7;QD=0.65;SB=18.55 GT:AD:DP:GQ:PL 1/1:0,16:37:6:55,6,0 chrVIII 5487 . T G 16.15 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.088;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=12.29;MQ0=7;MQRankSum=1.121;QD=0.39;ReadPosRankSum=4.399;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,16:41:18:46,0,18 chrVIII 5489 . G A 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=12.29;MQ0=7;QD=1.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:9:78,9,0 chrVIII 5490 . T G 16.16 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.089;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=12.28;MQ0=7;MQRankSum=1.176;QD=0.38;ReadPosRankSum=4.487;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,16:42:17:46,0,17 chrVIII 5492 . C T 14.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.28;MQ0=7;MQRankSum=1.341;QD=0.34;ReadPosRankSum=3.957;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,16:42:17:44,0,17 chrVIII 5500 . C T 10.45 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.26;MQ0=1;MQRankSum=1.970;QD=0.29;ReadPosRankSum=1.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,16:36:18:40,0,18 chrVIII 6345 . T C 80.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=14.22;MQ0=2;MQRankSum=0.698;QD=1.16;ReadPosRankSum=1.681;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,68:69:15:113,15,0 chrVIII 6359 . T C 80.26 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.0385;MLEAC=2;MLEAF=1.00;MQ=14.46;MQ0=2;QD=1.20;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,67:67:15:113,15,0 chrVIII 6409 . G C 37.14 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.763;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=9.4945;MLEAC=1;MLEAF=0.500;MQ=17.66;MQ0=0;MQRankSum=0.588;QD=1.77;ReadPosRankSum=-0.979;SB=15.86 GT:AD:DP:GQ:PL 1/1:4,11:21:9:69,9,0 chrVIII 6418 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=15.80;MQ0=0;QD=2.31;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:52,6,0 chrVIII 6465 . T C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.159;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;MQRankSum=-0.729;QD=3.66;ReadPosRankSum=2.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,4:9:9:65,9,0 chrVIII 6475 . C T 297 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=16.50;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:45:330,45,0 chrVIII 6484 . T C 94.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=1;MLEAF=0.500;MQ=19.47;MQ0=0;MQRankSum=-1.239;QD=1.81;ReadPosRankSum=-0.780;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:28,24:52:99:124,0,290 chrVIII 6528 . T A 283.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.944;DP=210;Dels=0.00;FS=2.220;HaplotypeScore=37.9803;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=6;MQRankSum=0.904;QD=1.35;ReadPosRankSum=-0.876;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:163,47:210:99:313,0,2241 chrVIII 6529 . T G 582.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;DP=211;Dels=0.00;FS=4.442;HaplotypeScore=38.7689;MLEAC=1;MLEAF=0.500;MQ=19.95;MQ0=6;MQRankSum=-1.368;QD=2.76;ReadPosRankSum=0.191;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:134,77:211:99:612,0,1902 chrVIII 6531 . A C 600.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=218;Dels=0.00;FS=1.840;HaplotypeScore=39.5576;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=6;MQRankSum=-0.306;QD=2.75;ReadPosRankSum=-1.802;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:133,84:218:99:630,0,1856 chrVIII 6535 . G C 1821.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;DP=220;Dels=0.00;FS=1.145;HaplotypeScore=22.1481;MLEAC=1;MLEAF=0.500;MQ=20.46;MQ0=6;MQRankSum=-0.082;QD=8.28;ReadPosRankSum=3.256;SB=-4.330e+02 GT:AD:DP:GQ:PL 0/1:87,133:220:99:1851,0,755 chrVIII 6544 . G C 1803.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.318;DP=231;Dels=0.00;FS=0.532;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=6;MQRankSum=0.201;QD=7.81;ReadPosRankSum=7.202;SB=-4.420e+02 GT:AD:DP:GQ:PL 0/1:97,133:231:99:1833,0,954 chrVIII 6545 . T C 1797.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.384;DP=231;Dels=0.00;FS=1.113;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=6;MQRankSum=-0.207;QD=7.78;ReadPosRankSum=7.308;SB=-4.410e+02 GT:AD:DP:GQ:PL 0/1:98,133:231:99:1827,0,1024 chrVIII 6556 . G C 1141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.657;DP=229;Dels=0.00;FS=4.140;HaplotypeScore=20.7540;MLEAC=1;MLEAF=0.500;MQ=20.40;MQ0=6;MQRankSum=-2.188;QD=4.98;ReadPosRankSum=4.222;SB=-3.510e+02 GT:AD:DP:GQ:PL 0/1:133,96:229:99:1171,0,1701 chrVIII 6600 . G A 704 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.0468;MLEAC=2;MLEAF=1.00;MQ=21.50;MQ0=0;QD=14.37;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:737,87,0 chrVIII 6609 . T C 318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;DP=28;Dels=0.00;FS=6.990;HaplotypeScore=4.3128;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=0;MQRankSum=1.529;QD=11.36;ReadPosRankSum=-0.577;SB=-2.214e-03 GT:AD:DP:GQ:PL 0/1:5,20:28:27:348,0,27 chrVIII 6611 . C T 477 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=19.08;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:60:510,60,0 chrVIII 6632 . C A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DP=12;Dels=0.00;FS=2.398;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=19.74;MQ0=0;MQRankSum=1.034;QD=1.42;ReadPosRankSum=1.769;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:7,4:12:47:47,0,70 chrVIII 6635 . G T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=0;MQRankSum=-0.876;QD=2.67;ReadPosRankSum=-1.307;SB=-3.100e+01 GT:AD:DP:GQ:PL 0/1:4,5:9:50:54,0,50 chrVIII 6653 . T A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;MQRankSum=0.198;QD=2.69;ReadPosRankSum=-0.922;SB=1.25 GT:AD:DP:GQ:PL 1/1:2,5:7:6:50,6,0 chrVIII 6655 . T A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;MQRankSum=0.922;QD=2.41;ReadPosRankSum=-0.922;SB=1.25 GT:AD:DP:GQ:PL 1/1:2,5:7:6:48,6,0 chrVIII 6687 . A G 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8203;MLEAC=1;MLEAF=0.500;MQ=20.73;MQ0=0;MQRankSum=1.419;QD=2.42;ReadPosRankSum=5.577;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,24:67:99:192,0,113 chrVIII 6688 . G A 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.171;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8203;MLEAC=1;MLEAF=0.500;MQ=20.87;MQ0=0;MQRankSum=-0.056;QD=1.16;ReadPosRankSum=-4.903;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,40:68:99:109,0,220 chrVIII 6711 . T C 408.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.455;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=3;MQRankSum=-1.444;QD=3.49;ReadPosRankSum=2.496;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,46:117:99:438,0,639 chrVIII 6734 . G A 1567 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=3;QD=11.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1600,192,0 chrVIII 6737 . G A 1588 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=4;MQRankSum=1.406;QD=11.18;ReadPosRankSum=-1.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:1621,198,0 chrVIII 6750 . C T 517.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.278;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7781;MLEAC=1;MLEAF=0.500;MQ=21.57;MQ0=6;MQRankSum=0.439;QD=3.86;ReadPosRankSum=-0.435;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,49:134:99:547,0,622 chrVIII 6751 . G A 544.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.886;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7781;MLEAC=1;MLEAF=0.500;MQ=21.53;MQ0=6;MQRankSum=0.916;QD=4.12;ReadPosRankSum=-0.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,43:132:99:574,0,652 chrVIII 6752 . G A 554.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7781;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=7;MQRankSum=0.751;QD=4.23;ReadPosRankSum=-0.625;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,43:131:99:584,0,669 chrVIII 6755 . C A 544.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7781;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=7;MQRankSum=0.523;QD=4.18;ReadPosRankSum=-1.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,50:130:99:574,0,673 chrVIII 6759 . A G 531.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.812;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5668;MLEAC=1;MLEAF=0.500;MQ=21.61;MQ0=8;MQRankSum=1.065;QD=4.02;ReadPosRankSum=-0.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,45:132:99:561,0,672 chrVIII 6772 . C T 742.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.967;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=22.09;MQ0=9;MQRankSum=0.076;QD=6.51;ReadPosRankSum=-1.632;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:44,70:114:99:772,0,448 chrVIII 6799 . C A 207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=6;MQRankSum=1.658;QD=3.91;ReadPosRankSum=2.964;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,21:53:99:237,0,226 chrVIII 6812 . A G 297 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=6;MQRankSum=0.924;QD=8.25;ReadPosRankSum=1.617;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:39:330,39,0 chrVIII 6823 . C T 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DP=24;Dels=0.00;FS=5.563;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.34;MQ0=6;MQRankSum=-1.084;QD=4.58;ReadPosRankSum=-2.366;SB=-5.656e-03 GT:AD:DP:GQ:PL 0/1:11,13:24:64:140,0,64 chrVIII 6857 . A G 40.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=13.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrVIII 7096 . G T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.212;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;MQRankSum=-0.474;QD=1.22;ReadPosRankSum=3.110;SB=1.24 GT:AD:DP:GQ:PL 1/1:12,5:17:6:52,6,0 chrVIII 7113 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;MQRankSum=1.495;QD=2.69;ReadPosRankSum=1.495;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:2,5:7:6:50,6,0 chrVIII 7129 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=0;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrVIII 7131 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=0;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrVIII 7227 . A G 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=0.421;QD=5.88;ReadPosRankSum=-2.017;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:4,4:8:77:77,0,81 chrVIII 7228 . A T 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-2.017;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:4,4:8:75:75,0,79 chrVIII 7231 . T C 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=9;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=0;MQRankSum=-0.876;QD=5.22;ReadPosRankSum=2.219;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:5,4:9:77:77,0,99 chrVIII 7234 . G A 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=12;Dels=0.00;FS=4.393;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=0.000;QD=7.58;ReadPosRankSum=-2.520;SB=-6.508e-03 GT:AD:DP:GQ:PL 0/1:4,7:12:78:121,0,78 chrVIII 7237 . G A 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=0;MQRankSum=-0.212;QD=6.79;ReadPosRankSum=-2.899;SB=-6.508e-03 GT:AD:DP:GQ:PL 0/1:4,10:14:78:125,0,78 chrVIII 7243 . T C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=1;MQRankSum=0.478;QD=1.42;ReadPosRankSum=2.920;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:15,4:19:57:57,0,241 chrVIII 7252 . C T 59.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=2;MQRankSum=1.158;QD=1.90;ReadPosRankSum=1.319;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:25,6:31:89:89,0,401 chrVIII 7338 . A G 214 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.559;DP=25;Dels=0.00;FS=6.628;HaplotypeScore=3.7613;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=2;MQRankSum=2.273;QD=8.56;ReadPosRankSum=-1.453;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,20:25:30:247,30,0 chrVIII 12052 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.97;MQ0=73;QD=0.22;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:64,30:95:6:52,6,0 chrVIII 12058 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.48;MQ0=62;QD=0.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:54,30:84:6:53,6,0 chrVIII 12492 . G C 54.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.21;MQ0=1;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:87,12,0 chrVIII 12495 . T G 54.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=7;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=1;MQRankSum=1.380;QD=7.79;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,5:7:12:87,12,0 chrVIII 12513 . A C 105.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=17.65;MQ0=2;QD=8.76;SB=-5.063e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:138,18,0 chrVIII 12546 . T C 59.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.266;DP=28;Dels=0.00;FS=23.965;HaplotypeScore=10.7876;MLEAC=1;MLEAF=0.500;MQ=21.04;MQ0=2;MQRankSum=3.009;QD=2.11;ReadPosRankSum=-2.906;SB=-2.931e+00 GT:AD:DP:GQ:PL 0/1:14,14:28:78:89,0,78 chrVIII 12548 . C T 81.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;DP=28;Dels=0.00;FS=23.965;HaplotypeScore=10.7876;MLEAC=1;MLEAF=0.500;MQ=21.04;MQ0=2;MQRankSum=3.060;QD=2.89;ReadPosRankSum=-2.906;SB=-2.974e+00 GT:AD:DP:GQ:PL 0/1:14,14:28:75:111,0,75 chrVIII 12550 . G C 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.270;DP=29;Dels=0.00;FS=25.056;HaplotypeScore=10.7876;MLEAC=1;MLEAF=0.500;MQ=21.37;MQ0=2;MQRankSum=-3.586;QD=1.55;ReadPosRankSum=3.050;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:15,14:29:75:75,0,104 chrVIII 12555 . C T 87.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.367;DP=29;Dels=0.00;FS=25.056;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.37;MQ0=2;MQRankSum=2.806;QD=3.00;ReadPosRankSum=-3.050;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:14,15:29:75:117,0,75 chrVIII 12557 . A G 82.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.635;DP=28;Dels=0.00;FS=25.056;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=1;MQRankSum=3.342;QD=2.93;ReadPosRankSum=-2.318;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:13,15:28:75:112,0,75 chrVIII 12563 . T C 79.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;DP=35;Dels=0.00;FS=26.511;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=1;MQRankSum=3.412;QD=2.26;ReadPosRankSum=-0.857;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:15,20:35:75:109,0,75 chrVIII 12605 . G A 340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=0;QD=9.44;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:42:373,42,0 chrVIII 12606 . G C 270.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.859;DP=36;Dels=0.00;FS=10.792;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=0;MQRankSum=2.805;QD=7.50;ReadPosRankSum=2.633;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:3,33:36:20:303,20,0 chrVIII 12608 . A G 277.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.458;DP=36;Dels=0.00;FS=10.792;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=0;MQRankSum=2.576;QD=7.70;ReadPosRankSum=2.747;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:3,33:36:20:310,20,0 chrVIII 12613 . T A 327 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=9.08;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:42:360,42,0 chrVIII 12616 . T A 280.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.638;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;MQRankSum=1.550;QD=7.37;ReadPosRankSum=1.641;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:1,37:38:20:313,20,0 chrVIII 12630 . A G 420 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=11.05;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:51:453,51,0 chrVIII 12652 . C T 413 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.915;DP=42;Dels=0.00;FS=29.350;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;MQRankSum=2.333;QD=9.83;ReadPosRankSum=1.801;SB=-1.200e-02 GT:AD:DP:GQ:PL 1/1:2,40:42:32:446,32,0 chrVIII 12663 . A C 349 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=8.72;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,39:40:45:382,45,0 chrVIII 12690 . T C 236.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.568;DP=36;Dels=0.00;FS=62.895;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;MQRankSum=3.799;QD=6.56;ReadPosRankSum=0.913;SB=-3.392e-01 GT:AD:DP:GQ:PL 1/1:6,30:36:14:269,14,0 chrVIII 12721 . T A 100.26 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=5.01;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:133,15,0 chrVIII 12722 . T G 104.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;MQRankSum=-0.286;QD=4.74;ReadPosRankSum=2.227;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,20:22:15:137,15,0 chrVIII 12735 . C T 358 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=11.93;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:391,45,0 chrVIII 12742 . T C 451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;MQRankSum=-1.733;QD=11.87;ReadPosRankSum=1.550;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:57:484,57,0 chrVIII 12758 . A G 652 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=15.90;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:685,81,0 chrVIII 12780 . A G 1130 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=17.94;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1163,135,0 chrVIII 12931 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=17.03;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1021,111,0 chrVIII 12938 . C A 811 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=15.90;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:844,96,0 chrVIII 12972 . T C 1110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;MQRankSum=0.449;QD=13.54;ReadPosRankSum=1.689;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1143,135,0 chrVIII 12985 . C G 1262 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=15.02;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1295,153,0 chrVIII 12997 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=16.80;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1461,159,0 chrVIII 13001 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=17.04;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1447,162,0 chrVIII 13244 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.56;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2530,276,0 chrVIII 13408 . A C 2042 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.22;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2075,243,0 chrVIII 13429 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.49;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2021,231,0 chrVIII 13526 . A G 1909 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.69;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1942,219,0 chrVIII 13589 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.35;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1441,162,0 chrVIII 13703 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=90;Dels=0.00;FS=3.310;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.385;QD=22.27;ReadPosRankSum=1.694;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2037,231,0 chrVIII 13779 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.89;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2062,225,0 chrVIII 13783 . G T 2023 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.45;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2056,234,0 chrVIII 13851 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.36;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2788,309,0 chrVIII 13908 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.98;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3043,339,0 chrVIII 13934 . A G 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.964;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.488;QD=19.94;ReadPosRankSum=1.708;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2905,345,0 chrVIII 13960 . T C 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.139;QD=19.75;ReadPosRankSum=1.663;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2995,357,0 chrVIII 14034 . A C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.912;QD=22.29;ReadPosRankSum=1.691;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3789,426,0 chrVIII 14064 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.61;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4135,468,0 chrVIII 14130 . G C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.59;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3281,378,0 chrVIII 14146 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=20.72;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2893,327,0 chrVIII 14206 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.07;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2414,273,0 chrVIII 14262 . T A 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=127;Dels=0.00;FS=8.258;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-1.649;QD=21.65;ReadPosRankSum=2.391;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2783,306,0 chrVIII 14293 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=20.34;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2820,312,0 chrVIII 14337 . T C 1671 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=16.71;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1704,195,0 chrVIII 14338 . G A 1691 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=17.08;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1724,195,0 chrVIII 14346 . G T 1663 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=17.14;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1696,192,0 chrVIII 14381 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=17.08;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1570,186,0 chrVIII 14448 . T C 2007 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=19.30;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2040,234,0 chrVIII 14452 . T G 1976 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.56;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2009,228,0 chrVIII 14457 . T G 2033 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=20.54;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2066,240,0 chrVIII 14665 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=8.360;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=0.347;QD=17.36;ReadPosRankSum=2.366;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2082,234,0 chrVIII 14669 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=17.45;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2110,231,0 chrVIII 14784 . A G 4311.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.0705;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.34;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4311,504,0 chrVIII 14965 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=23.43;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3585,396,0 chrVIII 15038 . G C 2997 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.11;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3030,351,0 chrVIII 15041 . A G 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=3.399;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.569;QD=20.29;ReadPosRankSum=1.683;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2873,339,0 chrVIII 15293 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.72;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2827,318,0 chrVIII 15490 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.99;MQ0=0;QD=21.73;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1858,204,0 chrVIII 15569 . A T 2186 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.51;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2219,249,0 chrVIII 15638 . T C 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.447;QD=20.40;ReadPosRankSum=1.620;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2562,288,0 chrVIII 15653 . T C 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=127;Dels=0.00;FS=5.002;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.352;QD=21.38;ReadPosRankSum=3.389;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:4,123:127:99:2748,312,0 chrVIII 15755 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.4977;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.54;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3092,354,0 chrVIII 15928 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.8041;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.03;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3524,411,0 chrVIII 16308 . T C 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.928;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.000;QD=21.40;ReadPosRankSum=1.677;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2751,309,0 chrVIII 16326 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.78;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2625,294,0 chrVIII 16403 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.54;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2273,249,0 chrVIII 16671 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.52;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3239,381,0 chrVIII 16733 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.34;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3601,411,0 chrVIII 16735 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.82;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3686,411,0 chrVIII 16803 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.020;QD=20.33;ReadPosRankSum=1.712;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3496,402,0 chrVIII 16886 . G C 4242.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=23.57;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4242,486,0 chrVIII 16958 . T C 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;DP=154;Dels=0.00;FS=3.396;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=0.170;QD=20.75;ReadPosRankSum=1.664;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3229,372,0 chrVIII 17120 . A C 2597 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=20.29;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2630,297,0 chrVIII 17127 . T A 2225 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=86.0311;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;QD=19.69;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2258,252,0 chrVIII 17132 . T G 1912 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=92.9608;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;QD=18.38;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1945,222,0 chrVIII 17151 . A G 1777 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=16.61;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1810,213,0 chrVIII 17157 . A G 1849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=0.696;QD=17.28;ReadPosRankSum=1.603;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1882,213,0 chrVIII 17163 . T C 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;MQRankSum=0.247;QD=17.37;ReadPosRankSum=1.547;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1978,222,0 chrVIII 17359 . A T 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=3.837;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=1.270;QD=22.49;ReadPosRankSum=1.640;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1720,195,0 chrVIII 17517 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.17;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2027,222,0 chrVIII 17641 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.23;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2147,240,0 chrVIII 17751 . G T 1897 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.40;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1930,216,0 chrVIII 17786 . A C 1904 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.26;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1937,219,0 chrVIII 18093 . T G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.226;QD=20.04;ReadPosRankSum=1.657;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1897,219,0 chrVIII 18094 . T C 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.040;QD=18.46;ReadPosRankSum=2.397;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1768,207,0 chrVIII 18107 . A G 1883 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.03;FS=0.000;HaplotypeScore=9.5641;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.46;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1916,225,0 chrVIII 18197 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=5.940;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.549;QD=22.51;ReadPosRankSum=1.689;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3624,408,0 chrVIII 18210 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.51;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3484,378,0 chrVIII 18283 . A G 3866.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.72;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3866,444,0 chrVIII 18494 . A G 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=194;Dels=0.00;FS=5.799;HaplotypeScore=12.6691;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.120;QD=20.77;ReadPosRankSum=2.964;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4029,468,0 chrVIII 18542 . T C 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=193;Dels=0.00;FS=10.209;HaplotypeScore=19.8252;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.131;QD=20.19;ReadPosRankSum=2.424;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,188:193:99:3896,453,0 chrVIII 18620 . G C 193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.969;DP=135;Dels=0.00;FS=3.386;HaplotypeScore=114.6280;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-2.080;QD=1.43;ReadPosRankSum=2.376;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:2,131:135:27:226,27,0 chrVIII 18632 . T C 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=137;Dels=0.00;FS=2.920;HaplotypeScore=7.2575;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=-0.224;QD=16.15;ReadPosRankSum=1.122;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2246,261,0 chrVIII 18702 . A G 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=153;Dels=0.00;FS=6.049;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.461;QD=17.90;ReadPosRankSum=2.417;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:2771,321,0 chrVIII 18708 . C T 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.0649;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.936;QD=19.23;ReadPosRankSum=0.632;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2898,300,0 chrVIII 18799 . G T 2715 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.72;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2748,309,0 chrVIII 18855 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=24.14;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3597,411,0 chrVIII 18917 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.67;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4391,483,0 chrVIII 18991 . T C 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=197;Dels=0.00;FS=2.606;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.355;QD=22.33;ReadPosRankSum=2.362;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4399,504,0 chrVIII 19013 . G A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.99;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4310,474,0 chrVIII 19031 . T G 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.416;QD=18.37;ReadPosRankSum=1.715;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3839,441,0 chrVIII 19035 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=215;Dels=0.00;FS=4.179;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-0.098;QD=18.93;ReadPosRankSum=1.683;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,211:215:99:4070,444,0 chrVIII 19101 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=171;Dels=0.00;FS=3.002;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.352;QD=18.87;ReadPosRankSum=2.421;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3259,369,0 chrVIII 19172 . G A 4281.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.73;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4281,477,0 chrVIII 19535 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.2829;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.53;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4303,509,0 chrVIII 19760 . T G 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=4.544;HaplotypeScore=8.2326;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.698;QD=21.74;ReadPosRankSum=1.698;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4478,510,0 chrVIII 19808 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.73;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3498,393,0 chrVIII 19914 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.2449;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.10;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4313,480,0 chrVIII 19970 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.43;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3842,414,0 chrVIII 20294 . G T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.14;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3911,444,0 chrVIII 20351 . A G 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=190;Dels=0.00;FS=2.652;HaplotypeScore=13.7633;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.786;QD=21.25;ReadPosRankSum=2.424;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4038,462,0 chrVIII 20531 . G A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.63;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4868,558,0 chrVIII 20913 . C G 3565.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.35;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3565,402,0 chrVIII 20921 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.14;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3552,393,0 chrVIII 20992 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.25;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4059,447,0 chrVIII 20993 . C T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.97;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3963,438,0 chrVIII 21296 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.054;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.2894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.071;QD=23.22;ReadPosRankSum=0.304;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4551,506,0 chrVIII 21541 . A C 2518 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.34;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2551,300,0 chrVIII 21579 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.12;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2692,297,0 chrVIII 21612 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5871;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.12;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2842,312,0 chrVIII 21639 . G T 3074 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.50;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3107,345,0 chrVIII 21696 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.19;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2830,312,0 chrVIII 21768 . T G 2859 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.24;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2892,327,0 chrVIII 22121 . C T 4247.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.35;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4247,465,0 chrVIII 22159 . T G 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=200;Dels=0.00;FS=8.018;HaplotypeScore=2.8977;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.589;QD=20.83;ReadPosRankSum=3.381;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:4,196:200:99:4166,471,0 chrVIII 22160 . G C 4158.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.2638;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.38;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4158,474,0 chrVIII 22203 . C T 4485.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.43;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4485,495,0 chrVIII 22253 . T C 4543.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.4546;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.94;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4543,534,0 chrVIII 22430 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=9.862;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.628;QD=19.56;ReadPosRankSum=2.361;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2772,312,0 chrVIII 22464 . C A 2857 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.15;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2890,321,0 chrVIII 22684 . T A 2127 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.16;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2160,249,0 chrVIII 22766 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.38;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1701,198,0 chrVIII 22813 . T C 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.773;QD=23.75;ReadPosRankSum=1.679;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1577,177,0 chrVIII 22833 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.39;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1468,162,0 chrVIII 22834 . T G 1379 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.64;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1412,162,0 chrVIII 22997 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.19;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1436,159,0 chrVIII 23051 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.42;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1544,177,0 chrVIII 23055 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=21.44;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1555,174,0 chrVIII 23105 . T C 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.026;QD=19.27;ReadPosRankSum=1.681;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1324,153,0 chrVIII 23641 . T C 2618 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.17;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2651,309,0 chrVIII 23681 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.46;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2200,243,0 chrVIII 23701 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.61;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2094,231,0 chrVIII 23734 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.19;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1914,216,0 chrVIII 23964 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.97;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3065,333,0 chrVIII 24042 . C T 2865 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.10;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2898,327,0 chrVIII 24238 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2986,330,0 chrVIII 24416 . T G 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=3.369;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.237;QD=22.28;ReadPosRankSum=1.705;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2862,327,0 chrVIII 24666 . C T 3652.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=18.44;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3652,411,0 chrVIII 24674 . C T 3309.01 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=18.18;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3309,363,0 chrVIII 24676 . A G 2959 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.095;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;MQRankSum=-0.159;QD=15.99;ReadPosRankSum=-1.039;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:2992,354,0 chrVIII 24679 . G A 3176 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.1977;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=16.72;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3209,354,0 chrVIII 24712 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=14.34;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2671,294,0 chrVIII 24799 . A G 4167.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.63;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4167,480,0 chrVIII 24841 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=224;Dels=0.00;FS=8.870;HaplotypeScore=19.0493;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.586;QD=21.14;ReadPosRankSum=2.373;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4735,543,0 chrVIII 24880 . T G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=206;Dels=0.00;FS=7.780;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-1.899;QD=21.18;ReadPosRankSum=2.426;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4363,504,0 chrVIII 25004 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0608;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.10;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4342,486,0 chrVIII 25276 . G A 4902.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.0446;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=21.79;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4902,549,0 chrVIII 25318 . C T 5202.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=22.92;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5202,582,0 chrVIII 25333 . A G 4844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=0.083;QD=20.88;ReadPosRankSum=1.687;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:1,228:232:99:4844,561,0 chrVIII 25348 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=224;Dels=0.00;FS=2.984;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.349;QD=19.89;ReadPosRankSum=2.394;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,221:224:99:4455,519,0 chrVIII 25432 . G A 5439.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.0908;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.75;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5439,615,0 chrVIII 25522 . G T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.3453;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=22.14;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3963,444,0 chrVIII 25539 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=17.14;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3255,375,0 chrVIII 25552 . C A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=17.72;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3314,372,0 chrVIII 25581 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=207;Dels=0.00;FS=6.128;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.596;QD=17.92;ReadPosRankSum=2.365;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,202:207:99:3709,420,0 chrVIII 25673 . T A 2836 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=19.97;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2869,321,0 chrVIII 25676 . A T 2630 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-1.422;QD=19.63;ReadPosRankSum=1.706;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2663,291,0 chrVIII 25677 . C T 2617 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=19.39;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2650,291,0 chrVIII 25761 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=20.15;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3096,354,0 chrVIII 25834 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.2159;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.89;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1903,213,0 chrVIII 25883 . A G 1045 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=16.33;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1078,123,0 chrVIII 25898 . C T 1138 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=16.03;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1171,126,0 chrVIII 25929 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=12.06;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1022,120,0 chrVIII 25931 . T C 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=2.988;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;MQRankSum=-1.522;QD=12.42;ReadPosRankSum=2.363;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1089,123,0 chrVIII 25945 . G A 1260 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=12.86;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1293,144,0 chrVIII 25963 . T A 1254 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=13.93;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1287,144,0 chrVIII 26022 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.79;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1611,183,0 chrVIII 26172 . C G 2564 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.28;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2597,297,0 chrVIII 26177 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=20.06;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2721,306,0 chrVIII 27080 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.32;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3252,384,0 chrVIII 27293 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=3.641;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.428;QD=20.51;ReadPosRankSum=1.662;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3069,357,0 chrVIII 27546 . T A 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.7873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.888;QD=22.02;ReadPosRankSum=1.688;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3435,381,0 chrVIII 27988 . A C 2419 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.19;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2452,285,0 chrVIII 28030 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.79;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2531,279,0 chrVIII 28073 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.40;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2071,231,0 chrVIII 28186 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.51;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2847,315,0 chrVIII 28356 . T C 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=99;Dels=0.00;FS=7.720;HaplotypeScore=6.7121;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.187;QD=18.42;ReadPosRankSum=2.276;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1857,213,0 chrVIII 28362 . G T 1659 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.43;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1692,189,0 chrVIII 28416 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.30;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2428,279,0 chrVIII 28452 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.066;QD=21.96;ReadPosRankSum=1.706;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2910,339,0 chrVIII 28477 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.195;QD=20.93;ReadPosRankSum=1.708;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3026,345,0 chrVIII 28758 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.46;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3503,390,0 chrVIII 28797 . A C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=166;Dels=0.00;FS=6.101;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.135;QD=19.83;ReadPosRankSum=2.933;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3291,381,0 chrVIII 29200 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.424;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.630;QD=22.05;ReadPosRankSum=1.669;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2480,288,0 chrVIII 29289 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2727,300,0 chrVIII 29694 . G C 2111 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=19.55;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2144,249,0 chrVIII 29709 . T A 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=0.049;QD=20.27;ReadPosRankSum=1.699;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2161,237,0 chrVIII 29727 . A G 1799 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=18.17;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1832,210,0 chrVIII 29730 . G T 1754 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.90;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1787,195,0 chrVIII 29763 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=16.86;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1382,153,0 chrVIII 29809 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=20.90;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1830,201,0 chrVIII 29844 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=22.39;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2048,225,0 chrVIII 29863 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=21.64;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2348,264,0 chrVIII 29908 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.49;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2418,267,0 chrVIII 30035 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=23.46;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2215,246,0 chrVIII 30045 . T G 2064 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=18.94;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2097,240,0 chrVIII 30051 . C T 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.251;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.9531;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;MQRankSum=0.866;QD=18.76;ReadPosRankSum=0.866;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2059,228,0 chrVIII 30103 . T C 2034 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=16.54;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2067,237,0 chrVIII 30105 . G C 2003 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=16.28;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2036,228,0 chrVIII 30108 . A G 1895 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.236;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;MQRankSum=1.647;QD=15.41;ReadPosRankSum=1.704;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:1928,228,0 chrVIII 30117 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=15.57;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1979,228,0 chrVIII 30249 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=23.06;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3574,399,0 chrVIII 30279 . A G 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-0.285;QD=22.02;ReadPosRankSum=1.637;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3248,375,0 chrVIII 30311 . T C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=136;Dels=0.00;FS=7.753;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.515;QD=22.16;ReadPosRankSum=2.377;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3047,348,0 chrVIII 30386 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.69;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3494,378,0 chrVIII 30400 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=2.777;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.736;QD=20.89;ReadPosRankSum=2.389;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3405,405,0 chrVIII 30447 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.98;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3150,351,0 chrVIII 30468 . T C 2736 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.27;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2769,318,0 chrVIII 30556 . T C 2676 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.58;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2709,306,0 chrVIII 30596 . G C 2220 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.37;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2253,258,0 chrVIII 30642 . T G 2240 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.75;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2273,258,0 chrVIII 30659 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.72;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2146,243,0 chrVIII 30666 . T C 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=4.337;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.529;QD=22.12;ReadPosRankSum=1.696;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2134,249,0 chrVIII 30979 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.36;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1571,177,0 chrVIII 30987 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.41;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1482,165,0 chrVIII 31011 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.26;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1670,189,0 chrVIII 31049 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.84;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1492,165,0 chrVIII 31069 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.93;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1498,165,0 chrVIII 31116 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.78;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1819,198,0 chrVIII 31175 . A C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=6.320;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.144;QD=21.73;ReadPosRankSum=1.703;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2641,309,0 chrVIII 31196 . T G 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.401;QD=20.17;ReadPosRankSum=1.672;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2352,270,0 chrVIII 31197 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.94;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2326,261,0 chrVIII 31261 . A C 2209 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.66;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2242,255,0 chrVIII 31304 . T G 2885 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.54;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2918,348,0 chrVIII 31482 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.085;QD=23.71;ReadPosRankSum=1.675;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2926,333,0 chrVIII 31551 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.96;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3375,393,0 chrVIII 31645 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.5678;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.71;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1905,213,0 chrVIII 31697 . G C 2081 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.38;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2114,243,0 chrVIII 31721 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.57;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2425,270,0 chrVIII 31742 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.67;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2568,282,0 chrVIII 31980 . A G 4082.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.68;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4082,471,0 chrVIII 32029 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.87;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3652,417,0 chrVIII 32089 . T C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.814;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.781;QD=22.15;ReadPosRankSum=1.610;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3201,366,0 chrVIII 32115 . A T 2868 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=2.9246;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.78;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2901,330,0 chrVIII 32117 . T G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.655;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.9246;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=1.030;QD=19.36;ReadPosRankSum=0.187;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2898,333,0 chrVIII 32190 . G A 2528 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.45;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2561,288,0 chrVIII 32373 . A T 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=4.576;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.969;QD=23.43;ReadPosRankSum=1.637;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2587,291,0 chrVIII 32614 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.53;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4047,453,0 chrVIII 32625 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.05;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3307,366,0 chrVIII 32708 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.00;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1969,216,0 chrVIII 32752 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.63;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2756,294,0 chrVIII 32783 . T G 2273 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.77;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2306,270,0 chrVIII 32801 . T G 2150 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.48;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2183,240,0 chrVIII 32836 . G T 331 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=8.3861;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=12.26;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,25:27:42:364,42,0 chrVIII 32859 . G A 50.97 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=7.28;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:83,9,0 chrVIII 32997 . A G 451 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:54:484,54,0 chrVIII 33089 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.31;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1037,117,0 chrVIII 33105 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.32;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1339,153,0 chrVIII 33167 . G A 1523 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.73;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1556,171,0 chrVIII 33337 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.42;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2670,297,0 chrVIII 33397 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2356,255,0 chrVIII 33844 . G A 4125.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.9718;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.73;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4125,474,0 chrVIII 34036 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.78;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3345,372,0 chrVIII 34071 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=18.72;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:2934,333,0 chrVIII 34233 . T C 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.340;QD=20.18;ReadPosRankSum=1.700;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2192,255,0 chrVIII 34328 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.31;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2249,246,0 chrVIII 34341 . A G 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.516;QD=20.55;ReadPosRankSum=1.660;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2006,231,0 chrVIII 34368 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.733;QD=19.06;ReadPosRankSum=2.388;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1539,177,0 chrVIII 34395 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.69;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1528,174,0 chrVIII 34469 . T G 1948 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.39;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1981,222,0 chrVIII 34565 . G C 2171 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=23.10;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2204,255,0 chrVIII 34675 . G C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.42;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3372,393,0 chrVIII 34710 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=150;Dels=0.00;FS=4.162;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.519;QD=20.93;ReadPosRankSum=1.708;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,145:150:99:3172,372,0 chrVIII 34761 . C T 5084.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.3017;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.65;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5084,561,0 chrVIII 34826 . C T 4950.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.80;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4950,561,0 chrVIII 34831 . G T 4832.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.74;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4832,534,0 chrVIII 34972 . T C 5150.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.02;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5150,588,0 chrVIII 35012 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.16;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3689,417,0 chrVIII 35149 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.43;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,117:123:99:2423,276,0 chrVIII 35271 . T G 2752 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=15.2364;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.33;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2785,315,0 chrVIII 35378 . A G 2864 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=4;QD=22.37;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2897,342,0 chrVIII 35504 . A C 7208.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=19.0631;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.91;SB=-4.007e+03 GT:AD:DP:GQ:PL 1/1:0,327:329:99:7208,819,0 chrVIII 35576 . C T 5607.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.7935;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=21.24;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,260:264:99:5607,639,0 chrVIII 35681 . A G 6309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.094;DP=297;Dels=0.00;FS=14.505;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.867;QD=21.24;ReadPosRankSum=4.190;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:6,291:297:99:6309,737,0 chrVIII 35762 . G A 5196.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=0;QD=22.49;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5196,582,0 chrVIII 35854 . C A 3722.01 filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=8;QD=19.09;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3722,411,0 chrVIII 35882 . T C 3349.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=177;Dels=0.00;FS=9.492;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=5;MQRankSum=-1.007;QD=18.92;ReadPosRankSum=2.378;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3349,381,0 chrVIII 35975 . A G 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6523;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;MQRankSum=-1.520;QD=19.18;ReadPosRankSum=1.697;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1932,225,0 chrVIII 36028 . C T 810 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=15.28;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,51:53:96:843,96,0 chrVIII 36040 . T C 706 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=14.71;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:84:739,84,0 chrVIII 36042 . T G 721 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;QD=14.71;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:87:754,87,0 chrVIII 36066 . A G 806 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;MQRankSum=-0.871;QD=13.21;ReadPosRankSum=2.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,59:61:96:839,96,0 chrVIII 36073 . C T 902 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.34;MQ0=0;QD=14.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:935,105,0 chrVIII 36128 . T C 454 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=26.7267;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=11.07;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,40:41:57:487,57,0 chrVIII 36165 . G T 161.06 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.05;SB=-7.495e-02 GT:AD:DP:GQ:PL 1/1:0,19:20:21:194,21,0 chrVIII 36252 . G T 279 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=10.73;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:36:312,36,0 chrVIII 36270 . C T 377 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=13.00;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:45:410,45,0 chrVIII 36365 . A T 1206 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1239,141,0 chrVIII 36501 . C G 2933 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8620;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.74;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2966,345,0 chrVIII 36592 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8451;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.65;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3659,408,0 chrVIII 36778 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.90;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3117,351,0 chrVIII 37084 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=6.4471;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=17.79;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4216,483,0 chrVIII 37099 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.4677;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=14.47;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:3260,390,0 chrVIII 37198 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.441;QD=20.03;ReadPosRankSum=1.700;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4307,498,0 chrVIII 37339 . G T 4889.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.73;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4889,540,0 chrVIII 37489 . G A 4873.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.67;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4873,546,0 chrVIII 37609 . C T 6236.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=30.9487;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.80;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6236,687,0 chrVIII 37789 . G A 6544.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=17.1433;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.18;SB=-3.331e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:6544,732,0 chrVIII 37876 . T C 7279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=334;Dels=0.00;FS=3.142;HaplotypeScore=16.6486;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.048;QD=21.79;ReadPosRankSum=1.722;SB=-4.036e+03 GT:AD:DP:GQ:PL 1/1:1,333:334:99:7279,848,0 chrVIII 37931 . A G 5701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=15.1170;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.471;QD=20.14;ReadPosRankSum=1.708;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:1,282:283:99:5701,654,0 chrVIII 37944 . G A 5498.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=9.8252;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.36;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5498,609,0 chrVIII 38190 . C T 4768.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.26;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4768,531,0 chrVIII 38418 . G T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.54;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3381,372,0 chrVIII 38427 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.112;QD=20.38;ReadPosRankSum=0.450;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3212,353,0 chrVIII 38887 . T C 5644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.587;DP=251;Dels=0.00;FS=7.897;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.569;QD=22.49;ReadPosRankSum=3.823;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:5,246:251:99:5644,645,0 chrVIII 39238 . G C 4556.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.29;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4556,522,0 chrVIII 39521 . C G 1521 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=79.0889;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=15.52;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,93:98:99:1554,183,0 chrVIII 39684 . G T 2148 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.4758;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=20.26;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2181,240,0 chrVIII 39688 . G A 1980 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=19.80;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2013,225,0 chrVIII 39721 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.02;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1764,201,0 chrVIII 39758 . T C 169.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=97;Dels=0.00;FS=3.033;HaplotypeScore=82.5057;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.977;QD=1.74;ReadPosRankSum=2.399;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:24:202,24,0 chrVIII 39934 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=8.802;HaplotypeScore=72.2853;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.296;QD=0.23;ReadPosRankSum=2.263;SB=-7.408e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:6:49,6,0 chrVIII 39974 . C T 2012 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.53;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2045,225,0 chrVIII 40043 . A T 2254 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.54;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2287,258,0 chrVIII 40079 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=4.393;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.905;QD=23.85;ReadPosRankSum=1.693;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2156,246,0 chrVIII 40215 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.00;FS=4.547;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.034;QD=23.25;ReadPosRankSum=1.663;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3558,408,0 chrVIII 40269 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.54;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4351,477,0 chrVIII 40287 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.089;QD=18.30;ReadPosRankSum=1.003;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3331,390,0 chrVIII 40291 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.48;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3623,399,0 chrVIII 40541 . C T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.04;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4329,501,0 chrVIII 40899 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=140;Dels=0.00;FS=6.072;HaplotypeScore=6.8397;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.374;QD=20.79;ReadPosRankSum=2.835;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2943,342,0 chrVIII 40965 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.72;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4067,450,0 chrVIII 41185 . T C 3820.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.47;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3820,438,0 chrVIII 41194 . A C 3447.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.52;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3447,399,0 chrVIII 41245 . T A 3087 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.44;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3120,354,0 chrVIII 41497 . G T 2554 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.11;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2587,291,0 chrVIII 41555 . A G 2042 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2075,237,0 chrVIII 41661 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2280,255,0 chrVIII 41712 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2945,327,0 chrVIII 42065 . G A 4912.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4912,546,0 chrVIII 42238 . A G 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.410;QD=22.77;ReadPosRankSum=1.694;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4213,477,0 chrVIII 42291 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.36;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3711,420,0 chrVIII 42330 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.68;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3946,438,0 chrVIII 42500 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0200;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=23.48;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3991,453,0 chrVIII 42546 . C T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=23.19;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4082,462,0 chrVIII 42574 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=23.08;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3831,420,0 chrVIII 42616 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.90;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3687,417,0 chrVIII 42646 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.03;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3363,372,0 chrVIII 42709 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=21.42;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3299,363,0 chrVIII 42720 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.586;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;MQRankSum=-0.328;QD=19.22;ReadPosRankSum=1.664;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2993,342,0 chrVIII 42738 . T C 2686 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=18.52;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2719,306,0 chrVIII 42756 . A G 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;MQRankSum=-1.076;QD=15.77;ReadPosRankSum=1.627;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2130,243,0 chrVIII 42765 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=132;Dels=0.00;FS=3.044;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-1.462;QD=13.81;ReadPosRankSum=2.412;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:1856,219,0 chrVIII 42850 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=138;Dels=0.00;FS=3.027;HaplotypeScore=11.1643;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.353;QD=19.89;ReadPosRankSum=2.413;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2778,330,0 chrVIII 42946 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=162;Dels=0.00;FS=5.792;HaplotypeScore=14.2110;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.619;QD=22.51;ReadPosRankSum=2.919;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3647,420,0 chrVIII 43203 . A T 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.410;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.233;QD=22.18;ReadPosRankSum=1.704;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2806,309,0 chrVIII 43347 . T C 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.159;DP=115;Dels=0.00;FS=12.603;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.024;QD=19.55;ReadPosRankSum=3.206;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:4,108:114:99:2281,270,0 chrVIII 43614 . C T 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=3.301;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.059;QD=22.57;ReadPosRankSum=-0.760;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3170,348,0 chrVIII 43881 . C T 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.457;QD=23.29;ReadPosRankSum=-1.594;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2967,305,0 chrVIII 43928 . G T 3030 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.05;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3063,345,0 chrVIII 44569 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.93;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2189,255,0 chrVIII 44616 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.61;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2073,234,0 chrVIII 44670 . A G 2328 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.97;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2361,270,0 chrVIII 44691 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.09;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2308,255,0 chrVIII 44706 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.07;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2100,234,0 chrVIII 44715 . A G 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=104;Dels=0.00;FS=3.051;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-2.095;QD=17.67;ReadPosRankSum=2.402;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1871,219,0 chrVIII 44951 . A G 2026 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.4799;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.76;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2059,243,0 chrVIII 44969 . A G 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.445;QD=21.31;ReadPosRankSum=1.609;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2441,282,0 chrVIII 45041 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=3.110;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.236;QD=22.95;ReadPosRankSum=1.653;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4040,462,0 chrVIII 45099 . C G 2670 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.63;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2703,315,0 chrVIII 45102 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.37;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2804,309,0 chrVIII 46055 . A G 2761 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2794,315,0 chrVIII 46220 . A T 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.328;QD=22.91;ReadPosRankSum=1.682;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3172,354,0 chrVIII 46274 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2699,303,0 chrVIII 46457 . A G 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=133;Dels=0.00;FS=8.379;HaplotypeScore=10.7434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.176;QD=22.22;ReadPosRankSum=1.562;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2988,345,0 chrVIII 47060 . T C 5241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.0128;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.251;QD=21.30;ReadPosRankSum=1.704;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5241,594,0 chrVIII 47072 . A G 5497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.973;DP=260;Dels=0.00;FS=11.764;HaplotypeScore=10.4810;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.703;QD=21.14;ReadPosRankSum=2.865;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:3,257:260:99:5497,621,0 chrVIII 48088 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.7163;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.78;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2644,297,0 chrVIII 48187 . G A 6200.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.33;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:6200,711,0 chrVIII 48220 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=331;Dels=0.00;FS=16.318;HaplotypeScore=477.9517;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=-0.893;QD=9.69;ReadPosRankSum=2.427;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,329:331:99:3240,375,0 chrVIII 48299 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.181;DP=256;Dels=0.00;FS=4.676;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;MQRankSum=-1.851;QD=12.88;ReadPosRankSum=1.706;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:6,250:256:99:3297,381,0 chrVIII 48327 . A C 4769.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.9505;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.12;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4769,555,0 chrVIII 48508 . G A 5124.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.2405;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=21.90;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5124,564,0 chrVIII 48551 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.2497;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.41;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3875,447,0 chrVIII 48651 . T C 2559 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.47;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2592,297,0 chrVIII 48768 . G A 4749.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.2498;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=24.86;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4749,522,0 chrVIII 48921 . A T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.31;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3879,444,0 chrVIII 48939 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.590;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.028;QD=19.26;ReadPosRankSum=1.678;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3717,426,0 chrVIII 49201 . A G 8289.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.648;DP=379;Dels=0.00;FS=29.191;HaplotypeScore=22.2658;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-2.020;QD=21.87;ReadPosRankSum=3.794;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:5,369:379:99:8289,1001,0 chrVIII 49374 . T C 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.462;DP=783;Dels=0.00;FS=71.160;HaplotypeScore=35.5072;MLEAC=1;MLEAF=0.500;MQ=41.99;MQ0=0;MQRankSum=-9.755;QD=0.30;ReadPosRankSum=3.109;SB=-1.627e+03 GT:AD:DP:GQ:PL 0/1:489,289:783:99:263,0,5409 chrVIII 49378 . T A 408.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.303;DP=780;Dels=0.00;FS=68.521;HaplotypeScore=41.1515;MLEAC=1;MLEAF=0.500;MQ=41.70;MQ0=0;MQRankSum=-6.458;QD=0.52;ReadPosRankSum=2.489;SB=-1.964e+03 GT:AD:DP:GQ:PL 0/1:459,320:780:99:438,0,5662 chrVIII 49395 . G C 2426.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.550;DP=771;Dels=0.01;FS=62.431;HaplotypeScore=54.4403;MLEAC=1;MLEAF=0.500;MQ=41.39;MQ0=0;MQRankSum=-7.530;QD=3.15;ReadPosRankSum=-8.912;SB=-1.890e+03 GT:AD:DP:GQ:PL 0/1:433,325:767:99:2456,0,2563 chrVIII 49398 . C T 819.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.648;DP=644;Dels=0.01;FS=79.056;HaplotypeScore=51.0263;MLEAC=1;MLEAF=0.500;MQ=43.43;MQ0=0;MQRankSum=-5.416;QD=1.27;ReadPosRankSum=1.679;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:467,170:640:99:849,0,3356 chrVIII 49399 . G A 699.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;DP=637;Dels=0.00;FS=69.169;HaplotypeScore=44.1428;MLEAC=1;MLEAF=0.500;MQ=43.21;MQ0=0;MQRankSum=-7.694;QD=1.10;ReadPosRankSum=1.672;SB=-4.980e+02 GT:AD:DP:GQ:PL 0/1:472,164:637:99:729,0,3404 chrVIII 49400 . T C 720.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DP=639;Dels=0.00;FS=61.821;HaplotypeScore=44.1428;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=0;MQRankSum=-8.303;QD=1.13;ReadPosRankSum=1.379;SB=-4.760e+02 GT:AD:DP:GQ:PL 0/1:480,159:639:99:750,0,3603 chrVIII 49404 . T C 344.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.696;DP=633;Dels=0.00;FS=36.264;HaplotypeScore=42.0588;MLEAC=1;MLEAF=0.500;MQ=42.58;MQ0=0;MQRankSum=-8.060;QD=0.54;ReadPosRankSum=0.758;SB=-3.320e+02 GT:AD:DP:GQ:PL 0/1:494,139:633:99:374,0,4436 chrVIII 49405 . G A 409.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.125;DP=639;Dels=0.00;FS=37.808;HaplotypeScore=40.4928;MLEAC=1;MLEAF=0.500;MQ=42.67;MQ0=0;MQRankSum=-7.732;QD=0.64;ReadPosRankSum=-0.223;SB=-4.470e+02 GT:AD:DP:GQ:PL 0/1:496,139:639:99:439,0,4186 chrVIII 49406 . T C 396.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;DP=652;Dels=0.00;FS=31.035;HaplotypeScore=79.8644;MLEAC=1;MLEAF=0.500;MQ=43.14;MQ0=0;MQRankSum=-7.344;QD=0.61;ReadPosRankSum=-0.559;SB=-4.510e+02 GT:AD:DP:GQ:PL 0/1:511,141:652:99:426,0,4636 chrVIII 49413 . A G 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.681;DP=695;Dels=0.00;FS=33.795;HaplotypeScore=75.0869;MLEAC=1;MLEAF=0.500;MQ=44.63;MQ0=0;MQRankSum=-10.142;QD=0.34;ReadPosRankSum=-5.765;SB=-3.230e+02 GT:AD:DP:GQ:PL 0/1:555,139:695:99:265,0,5514 chrVIII 49416 . A G 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.966;DP=702;Dels=0.00;FS=40.260;HaplotypeScore=71.8269;MLEAC=1;MLEAF=0.500;MQ=45.51;MQ0=0;MQRankSum=-10.550;QD=0.23;ReadPosRankSum=-7.855;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:563,139:702:99:189,0,5857 chrVIII 49419 . A T 117.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;DP=709;Dels=0.00;FS=54.127;HaplotypeScore=53.8485;MLEAC=1;MLEAF=0.500;MQ=46.14;MQ0=0;MQRankSum=-10.289;QD=0.17;ReadPosRankSum=-10.119;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:572,137:709:99:147,0,6240 chrVIII 49451 . T A 10205.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=588;Dels=0.01;FS=3.815;HaplotypeScore=59.2253;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.471;QD=17.36;ReadPosRankSum=1.708;SB=-6.265e+03 GT:AD:DP:GQ:PL 1/1:1,584:585:99:10205,1143,0 chrVIII 49489 . C T 9110.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=623;Dels=0.01;FS=8.084;HaplotypeScore=45.3489;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.426;QD=14.62;ReadPosRankSum=2.214;SB=-6.042e+03 GT:AD:DP:GQ:PL 1/1:3,611:619:99:9110,1017,0 chrVIII 49620 . G T 5446.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=15.83;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:5446,609,0 chrVIII 49626 . T C 5147.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=14.92;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,338:345:99:5147,611,0 chrVIII 49719 . C T 6315.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=19.4322;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.50;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,303:308:99:6315,696,0 chrVIII 49773 . G T 5073.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.0609;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.79;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5073,573,0 chrVIII 49817 . A C 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.2610;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.217;QD=20.69;ReadPosRankSum=1.715;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4324,501,0 chrVIII 49899 . T C 3073 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=17.76;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3106,369,0 chrVIII 49977 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.27;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3489,381,0 chrVIII 50022 . T C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=3.897;HaplotypeScore=15.2548;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.136;QD=18.31;ReadPosRankSum=1.710;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:2963,354,0 chrVIII 50050 . A G 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=149;Dels=0.00;FS=5.748;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.318;QD=19.82;ReadPosRankSum=2.953;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:2986,351,0 chrVIII 50186 . C T 4710.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4710,534,0 chrVIII 50268 . C T 5068.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.25;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5068,567,0 chrVIII 50321 . G A 5706.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=22.2996;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.70;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,256:263:99:5706,633,0 chrVIII 50351 . T C 5811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=276;Dels=0.00;FS=3.058;HaplotypeScore=16.7184;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.606;QD=21.05;ReadPosRankSum=1.719;SB=-3.395e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:5811,660,0 chrVIII 50566 . C G 4250.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.68;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4250,486,0 chrVIII 50660 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.2554;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.61;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3350,369,0 chrVIII 50752 . T C 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.350;QD=22.66;ReadPosRankSum=1.650;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2933,336,0 chrVIII 51058 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.55;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3275,381,0 chrVIII 51089 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.23;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3755,420,0 chrVIII 51314 . C A 7347.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=16.2418;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.82;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,322:322:99:7347,834,0 chrVIII 51378 . A T 5178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=252;Dels=0.00;FS=12.122;HaplotypeScore=15.9198;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.347;QD=20.55;ReadPosRankSum=2.885;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:3,249:252:99:5178,579,0 chrVIII 51441 . T C 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=16.4153;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.266;QD=18.59;ReadPosRankSum=1.631;SB=-3.334e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:5130,579,0 chrVIII 51686 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.22;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3888,432,0 chrVIII 51713 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6646;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.75;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3074,345,0 chrVIII 51773 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.25;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2362,276,0 chrVIII 51856 . G T 2914 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.3516;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=23.31;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2947,333,0 chrVIII 51891 . T A 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.091;QD=22.32;ReadPosRankSum=2.417;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3326,390,0 chrVIII 51937 . C G 3822.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3339;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.09;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3822,429,0 chrVIII 52183 . G A 6371.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=14.7152;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.03;SB=-3.718e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:6371,714,0 chrVIII 52232 . C T 7222.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=24.7388;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=23.07;SB=-3.972e+03 GT:AD:DP:GQ:PL 1/1:0,311:313:99:7222,807,0 chrVIII 52328 . G A 8550.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=18.2866;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.17;SB=-4.207e+03 GT:AD:DP:GQ:PL 1/1:0,366:369:99:8550,934,0 chrVIII 52566 . G A 5043.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=25.0072;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.88;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:5043,579,0 chrVIII 52666 . G A 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=253;Dels=0.00;FS=3.886;HaplotypeScore=15.3512;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.124;QD=19.11;ReadPosRankSum=1.650;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:4836,546,0 chrVIII 52685 . C T 4681.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.3607;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.00;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4681,519,0 chrVIII 52712 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=18.84;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3957,444,0 chrVIII 52980 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=127;Dels=0.00;FS=9.273;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=1.733;QD=22.21;ReadPosRankSum=2.411;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2854,324,0 chrVIII 52993 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=20.30;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2469,273,0 chrVIII 52999 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.12;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2356,264,0 chrVIII 53006 . T A 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=4.810;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.773;QD=20.78;ReadPosRankSum=1.701;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2360,267,0 chrVIII 53097 . G T 1831 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.12;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1864,210,0 chrVIII 53214 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.015;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.037;QD=21.53;ReadPosRankSum=2.405;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3574,405,0 chrVIII 53483 . G A 6526.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.58;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:6526,720,0 chrVIII 53579 . T C 6189.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.44;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:6189,708,0 chrVIII 53843 . T C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.206;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-1.350;QD=20.05;ReadPosRankSum=1.707;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2780,327,0 chrVIII 53882 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.07;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3392,375,0 chrVIII 54035 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.02;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3210,363,0 chrVIII 54138 . G T 2590 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2623,291,0 chrVIII 54245 . A G 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.227;QD=20.86;ReadPosRankSum=1.684;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3057,360,0 chrVIII 54263 . G A 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.054;DP=138;Dels=0.00;FS=3.074;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=0.176;QD=19.22;ReadPosRankSum=-1.431;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2685,276,0 chrVIII 54264 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=19.62;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2741,303,0 chrVIII 54302 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=16.48;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2390,267,0 chrVIII 54591 . C A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.0027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4684,519,0 chrVIII 55333 . A G 3866.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.6940;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.49;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:3866,444,0 chrVIII 55348 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=243;Dels=0.00;FS=6.994;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.056;QD=14.19;ReadPosRankSum=2.429;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:2,239:243:99:3447,405,0 chrVIII 55477 . C T 6062.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.2131;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.88;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6062,675,0 chrVIII 56032 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.63;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3170,360,0 chrVIII 56225 . T C 2487 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=17.03;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2520,300,0 chrVIII 56250 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.4697;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=19.57;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3067,345,0 chrVIII 56364 . T G 2530 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.81;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2563,297,0 chrVIII 56423 . C T 1037.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.169;DP=155;Dels=0.00;FS=10.786;HaplotypeScore=10.8726;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;MQRankSum=-1.826;QD=6.69;ReadPosRankSum=10.188;SB=-4.401e+02 GT:AD:DP:GQ:PL 1/1:87,68:155:18:1070,18,0 chrVIII 56430 . C G 251.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898;DP=121;Dels=0.00;FS=22.204;HaplotypeScore=10.2262;MLEAC=1;MLEAF=0.500;MQ=36.52;MQ0=0;MQRankSum=-1.479;QD=2.07;ReadPosRankSum=6.751;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:92,23:121:99:281,0,236 chrVIII 56432 . T A 74.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;DP=117;Dels=0.00;FS=15.437;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=35.44;MQ0=0;MQRankSum=-1.587;QD=0.63;ReadPosRankSum=7.286;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:95,22:117:99:104,0,272 chrVIII 56439 . C T 208.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.007;DP=124;Dels=0.00;FS=16.012;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=37.26;MQ0=0;MQRankSum=-3.090;QD=1.68;ReadPosRankSum=7.335;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:102,22:124:99:238,0,421 chrVIII 56447 . C T 221.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.902;DP=125;Dels=0.00;FS=15.681;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=37.79;MQ0=0;MQRankSum=-1.743;QD=1.77;ReadPosRankSum=-1.351;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:103,22:125:99:251,0,470 chrVIII 56450 . G C 206.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.871;DP=120;Dels=0.00;FS=16.072;HaplotypeScore=2.7468;MLEAC=1;MLEAF=0.500;MQ=38.41;MQ0=0;MQRankSum=-2.728;QD=1.72;ReadPosRankSum=-2.639;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:98,22:120:99:236,0,440 chrVIII 56451 . T C 205.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DP=119;Dels=0.00;FS=16.018;HaplotypeScore=2.7468;MLEAC=1;MLEAF=0.500;MQ=38.78;MQ0=0;MQRankSum=-2.719;QD=1.72;ReadPosRankSum=-2.643;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:97,22:119:99:235,0,465 chrVIII 56452 . G T 205.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.037;DP=118;Dels=0.00;FS=18.823;HaplotypeScore=1.9581;MLEAC=1;MLEAF=0.500;MQ=39.45;MQ0=0;MQRankSum=-2.250;QD=1.74;ReadPosRankSum=-2.961;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:96,22:118:99:235,0,514 chrVIII 56463 . T C 190.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.522;DP=109;Dels=0.00;FS=21.343;HaplotypeScore=4.5800;MLEAC=1;MLEAF=0.500;MQ=40.82;MQ0=0;MQRankSum=-3.688;QD=1.74;ReadPosRankSum=-6.066;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:87,22:109:99:220,0,582 chrVIII 56466 . C T 188.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.390;DP=111;Dels=0.00;FS=21.600;HaplotypeScore=3.6134;MLEAC=1;MLEAF=0.500;MQ=42.14;MQ0=0;MQRankSum=-2.334;QD=1.69;ReadPosRankSum=-6.121;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:89,22:111:99:218,0,664 chrVIII 56538 . T A 1163 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.80;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1196,132,0 chrVIII 56604 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=23.60;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1756,192,0 chrVIII 56808 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.50;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3229,357,0 chrVIII 57698 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1575,183,0 chrVIII 57905 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.2940;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.15;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3334,366,0 chrVIII 57977 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.084;QD=23.07;ReadPosRankSum=1.692;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3945,450,0 chrVIII 58040 . C T 5106.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.42;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5106,576,0 chrVIII 58148 . T C 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=19.6510;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.701;QD=22.05;ReadPosRankSum=1.716;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4873,552,0 chrVIII 58390 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.1090;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;MQRankSum=-0.661;QD=18.13;ReadPosRankSum=1.714;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3518,402,0 chrVIII 58524 . C G 4956.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.2579;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.83;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4956,584,0 chrVIII 58620 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;MQRankSum=0.094;QD=22.08;ReadPosRankSum=1.711;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3644,423,0 chrVIII 58670 . A C 2910 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0175;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=18.90;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2943,339,0 chrVIII 58676 . A G 2876 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=2.815;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=1.625;QD=18.20;ReadPosRankSum=2.372;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2909,336,0 chrVIII 58677 . A G 2875 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=2.810;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=1.489;QD=18.43;ReadPosRankSum=2.402;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2908,336,0 chrVIII 58733 . A T 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.548;QD=17.86;ReadPosRankSum=1.687;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2802,309,0 chrVIII 59070 . A G 1035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=3.680;HaplotypeScore=5.7562;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.027;QD=15.92;ReadPosRankSum=1.677;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1068,123,0 chrVIII 59106 . T C 1092 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.61;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1125,132,0 chrVIII 59498 . G A 4698.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.37;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4698,537,0 chrVIII 59614 . T C 5126.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.00;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5126,591,0 chrVIII 59798 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.17;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3592,396,0 chrVIII 59801 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.80;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3411,390,0 chrVIII 59916 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.28;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3810,420,0 chrVIII 59936 . G C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.64;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3536,405,0 chrVIII 60158 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8402;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.60;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4046,441,0 chrVIII 60199 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;DP=187;Dels=0.02;FS=14.006;HaplotypeScore=8.3864;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.299;QD=18.63;ReadPosRankSum=3.080;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:3483,390,0 chrVIII 60200 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.495;DP=186;Dels=0.02;FS=8.690;HaplotypeScore=9.1751;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.555;QD=18.32;ReadPosRankSum=3.276;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:4,177:182:99:3407,390,0 chrVIII 60290 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=175;Dels=0.00;FS=5.697;HaplotypeScore=13.4281;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.925;QD=22.48;ReadPosRankSum=2.857;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3934,450,0 chrVIII 60493 . T C 3013 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.22;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3046,351,0 chrVIII 60709 . A G 3105 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.2581;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.02;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3138,357,0 chrVIII 60719 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.4626;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.65;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2944,339,0 chrVIII 60764 . T C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.058;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.767;QD=19.43;ReadPosRankSum=1.633;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2753,312,0 chrVIII 60785 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.38;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2723,306,0 chrVIII 61049 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.50;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3250,360,0 chrVIII 61057 . T C 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=147;Dels=0.00;FS=6.105;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.815;QD=20.35;ReadPosRankSum=2.925;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3025,351,0 chrVIII 61175 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=19.70;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1964,222,0 chrVIII 61184 . T C 1937 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=19.57;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1970,234,0 chrVIII 61190 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.50;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2002,231,0 chrVIII 61388 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.0066;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.94;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1748,195,0 chrVIII 61500 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.65;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2818,312,0 chrVIII 61547 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.16;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2720,309,0 chrVIII 61577 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.22;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2680,300,0 chrVIII 61954 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=184;Dels=0.00;FS=3.010;HaplotypeScore=13.3072;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.580;QD=22.56;ReadPosRankSum=1.675;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4151,468,0 chrVIII 62380 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=173;Dels=0.00;FS=9.576;HaplotypeScore=13.4470;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.111;QD=21.10;ReadPosRankSum=2.959;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3651,417,0 chrVIII 62455 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.23;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4227,468,0 chrVIII 62674 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=17.96;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2134,240,0 chrVIII 62690 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=93;Dels=0.00;FS=2.610;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;MQRankSum=-2.164;QD=18.95;ReadPosRankSum=2.925;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1795,201,0 chrVIII 62698 . T C 1575 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=19.69;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1608,186,0 chrVIII 62711 . A C 1348 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=19.26;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1381,156,0 chrVIII 62714 . G T 1286 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=18.64;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1319,144,0 chrVIII 62730 . C A 1462 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=18.99;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1495,168,0 chrVIII 62734 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=17.43;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1358,153,0 chrVIII 62846 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=16.15;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1293,153,0 chrVIII 62950 . C T 1141 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.37;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1174,129,0 chrVIII 62972 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.42;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1120,126,0 chrVIII 62981 . T C 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.758;QD=18.23;ReadPosRankSum=1.678;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1200,141,0 chrVIII 63044 . T C 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.165;QD=16.32;ReadPosRankSum=2.390;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1371,156,0 chrVIII 63051 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=15.52;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1430,159,0 chrVIII 63324 . T G 2991 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.52;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3024,342,0 chrVIII 63396 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.26;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3629,411,0 chrVIII 63548 . G A 3107 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3140,345,0 chrVIII 63582 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.75;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3263,369,0 chrVIII 63699 . A C 3029 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.11;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3062,357,0 chrVIII 63862 . C G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.04;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3282,372,0 chrVIII 63916 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=27.2891;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=15.83;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2012,225,0 chrVIII 64197 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.336;QD=20.68;ReadPosRankSum=2.400;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2080,234,0 chrVIII 64236 . G A 1343 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.19;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1376,153,0 chrVIII 64328 . A G 469 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=14.66;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:502,57,0 chrVIII 64330 . T C 470 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=14.69;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:57:503,57,0 chrVIII 64331 . G C 471 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=15.19;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:504,57,0 chrVIII 64341 . G C 407 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=11.00;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:51:440,51,0 chrVIII 64360 . A T 282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;MQRankSum=-0.347;QD=9.40;ReadPosRankSum=1.617;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:36:315,36,0 chrVIII 64396 . T C 427 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=11.24;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:460,54,0 chrVIII 64407 . C T 491 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.69;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:60:524,60,0 chrVIII 64748 . A G 2959 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2992,351,0 chrVIII 64903 . T C 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.134;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.610;QD=22.11;ReadPosRankSum=1.683;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3195,363,0 chrVIII 65200 . A G 5393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=241;Dels=0.00;FS=3.809;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.237;QD=22.38;ReadPosRankSum=1.688;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,237:241:99:5393,632,0 chrVIII 65412 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.51;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4259,480,0 chrVIII 65566 . A G 2771 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2804,321,0 chrVIII 65626 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.19;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3750,420,0 chrVIII 66123 . T C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=6.325;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.680;QD=20.81;ReadPosRankSum=1.706;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2822,327,0 chrVIII 66220 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=17.8460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3509,399,0 chrVIII 66280 . C T 5371.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.10;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5371,591,0 chrVIII 66575 . C T 814.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.575;DP=417;Dels=0.00;FS=12.810;HaplotypeScore=999.6982;MLEAC=1;MLEAF=0.500;MQ=42.48;MQ0=0;MQRankSum=-9.513;QD=1.95;ReadPosRankSum=-3.752;SB=-6.510e+02 GT:AD:DP:GQ:PL 0/1:314,103:417:99:844,0,331 chrVIII 66587 . T C 523.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.292;DP=417;Dels=0.00;FS=12.838;HaplotypeScore=13.3942;MLEAC=1;MLEAF=0.500;MQ=43.27;MQ0=0;MQRankSum=-10.946;QD=1.25;ReadPosRankSum=-5.986;SB=-3.670e+02 GT:AD:DP:GQ:PL 0/1:328,89:417:99:553,0,1959 chrVIII 67460 . T C 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=202;Dels=0.00;FS=6.217;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.626;QD=20.27;ReadPosRankSum=2.316;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4095,477,0 chrVIII 67629 . G T 2928 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.6579;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=15.33;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:2961,345,0 chrVIII 68025 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.6039;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.92;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4393,498,0 chrVIII 68202 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=18.5658;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.225;QD=21.74;ReadPosRankSum=1.713;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3848,438,0 chrVIII 68284 . G T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.8091;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.99;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3252,363,0 chrVIII 68352 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.11;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3951,444,0 chrVIII 68508 . A C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.3950;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.48;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3339,381,0 chrVIII 68532 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=200;Dels=0.00;FS=9.846;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.742;QD=20.73;ReadPosRankSum=2.965;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:4146,468,0 chrVIII 68854 . G C 3885.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3885,438,0 chrVIII 68905 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=197;Dels=0.00;FS=2.576;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.311;QD=20.12;ReadPosRankSum=2.964;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:3964,468,0 chrVIII 69088 . G C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.72;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3460,396,0 chrVIII 69126 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.31;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3636,402,0 chrVIII 69180 . G A 5573.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.29;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5573,621,0 chrVIII 69741 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3569,411,0 chrVIII 70138 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.70;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2952,324,0 chrVIII 70273 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.57;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3538,396,0 chrVIII 70286 . C G 3735.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.97;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3735,420,0 chrVIII 70434 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.60;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4904,546,0 chrVIII 70542 . A G 4942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=221;Dels=0.00;FS=3.576;HaplotypeScore=12.1131;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.886;QD=22.36;ReadPosRankSum=1.716;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4942,564,0 chrVIII 70883 . C G 5325.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.05;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5325,609,0 chrVIII 71457 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.7032;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.377;QD=22.20;ReadPosRankSum=1.715;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4551,537,0 chrVIII 71625 . T C 7202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=304;Dels=0.00;FS=2.821;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.215;QD=23.69;ReadPosRankSum=2.393;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:2,300:304:99:7202,813,0 chrVIII 71650 . G A 7006.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=10.0367;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.35;SB=-3.281e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:7006,795,0 chrVIII 72011 . G A 1458 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1491,168,0 chrVIII 72058 . T C 2102 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.13;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2135,249,0 chrVIII 72171 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.53;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2362,261,0 chrVIII 72247 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.06;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2790,309,0 chrVIII 72400 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.450;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.655;QD=22.94;ReadPosRankSum=1.681;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3153,369,0 chrVIII 72478 . T C 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.123;QD=20.79;ReadPosRankSum=1.700;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2278,261,0 chrVIII 72487 . A G 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=9.459;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=0.442;QD=19.62;ReadPosRankSum=2.402;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2054,237,0 chrVIII 72493 . A G 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=4.856;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=0.300;QD=19.23;ReadPosRankSum=1.699;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2033,234,0 chrVIII 72501 . T C 2162 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.21;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2195,246,0 chrVIII 72547 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.38;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2377,267,0 chrVIII 72634 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=3.535;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.882;QD=19.12;ReadPosRankSum=1.504;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3226,369,0 chrVIII 72635 . G T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=19.89;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3321,366,0 chrVIII 72697 . C G 2703 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.51;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:2736,312,0 chrVIII 72739 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.81;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2907,336,0 chrVIII 72862 . C G 2924 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.11;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2957,333,0 chrVIII 72925 . T C 2962 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.16;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2995,357,0 chrVIII 73129 . T C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=188;Dels=0.00;FS=5.077;HaplotypeScore=15.8924;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.172;QD=22.89;ReadPosRankSum=3.339;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:99:4303,489,0 chrVIII 73264 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.807;QD=18.05;ReadPosRankSum=2.407;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3155,354,0 chrVIII 73285 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.43;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2908,327,0 chrVIII 73441 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.8759;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.37;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3289,366,0 chrVIII 73687 . C A 5251.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.23;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5251,600,0 chrVIII 73735 . T C 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=224;Dels=0.00;FS=9.209;HaplotypeScore=8.1911;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.575;QD=19.87;ReadPosRankSum=2.923;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:3,219:224:99:4450,516,0 chrVIII 73741 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.16;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4475,495,0 chrVIII 73929 . A G 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=208;Dels=0.00;FS=5.864;HaplotypeScore=12.6452;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.248;QD=22.08;ReadPosRankSum=2.956;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4592,519,0 chrVIII 73993 . G A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.96;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4041,453,0 chrVIII 74059 . T G 2724 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=17.35;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2757,324,0 chrVIII 74101 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=14.48;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1771,204,0 chrVIII 74246 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1232;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.55;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3428,375,0 chrVIII 74321 . C T 5004.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.2401;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=24.65;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5004,555,0 chrVIII 74372 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=22.93;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4151,480,0 chrVIII 74397 . A G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=6.246;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;MQRankSum=-1.624;QD=20.09;ReadPosRankSum=2.414;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2786,332,0 chrVIII 74400 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=20.31;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2836,327,0 chrVIII 74421 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=18.75;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2396,273,0 chrVIII 74435 . T C 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.193;DP=127;Dels=0.00;FS=14.676;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;MQRankSum=-0.021;QD=17.17;ReadPosRankSum=3.388;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:4,122:127:99:2214,264,0 chrVIII 74477 . C A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0534;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.58;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3642,411,0 chrVIII 74519 . G A 4351.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.12;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4351,483,0 chrVIII 74573 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=17.42;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2715,318,0 chrVIII 74587 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=16.62;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2243,261,0 chrVIII 74593 . G C 2120 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=15.25;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2153,255,0 chrVIII 74611 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;QD=14.00;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1951,228,0 chrVIII 74631 . C G 1114 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=10.41;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1147,135,0 chrVIII 74632 . A G 1123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.00;FS=7.387;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;MQRankSum=-2.013;QD=10.30;ReadPosRankSum=2.404;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,105:109:99:1156,135,0 chrVIII 74705 . G T 2663 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=19.02;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2696,297,0 chrVIII 74714 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=0.119;QD=18.73;ReadPosRankSum=1.708;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2767,315,0 chrVIII 74718 . T C 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-1.501;QD=17.79;ReadPosRankSum=1.709;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2701,309,0 chrVIII 74727 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=17.56;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2719,300,0 chrVIII 74846 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=22.21;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3576,393,0 chrVIII 74924 . A T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=24.42;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3590,393,0 chrVIII 74998 . G T 2404 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.78;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2437,279,0 chrVIII 75187 . A G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.150;HaplotypeScore=85.9136;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.550;QD=22.20;ReadPosRankSum=1.696;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2142,246,0 chrVIII 75639 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3572,414,0 chrVIII 75768 . T C 2554 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2587,294,0 chrVIII 76093 . C A 578 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=14.45;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:69:611,69,0 chrVIII 76095 . A G 578 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.21;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:69:611,69,0 chrVIII 76580 . T C 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=124;Dels=0.00;FS=14.210;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.976;QD=19.40;ReadPosRankSum=2.927;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2438,273,0 chrVIII 76673 . C T 2222 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.02;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2255,252,0 chrVIII 76691 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.93;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2272,258,0 chrVIII 76739 . A G 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=117;Dels=0.00;FS=4.479;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.226;QD=21.72;ReadPosRankSum=1.702;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2574,294,0 chrVIII 76827 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.38;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3077,345,0 chrVIII 76976 . C A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.29;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3722,417,0 chrVIII 77201 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.86;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3181,351,0 chrVIII 77306 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.222;QD=21.16;ReadPosRankSum=1.614;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2509,291,0 chrVIII 77625 . C G 4685.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.4240;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.49;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4685,540,0 chrVIII 78204 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3304,366,0 chrVIII 78270 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.11;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2708,300,0 chrVIII 78803 . T G 953 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.44;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:986,114,0 chrVIII 79037 . A G 2436 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.0955;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.88;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2469,279,0 chrVIII 79208 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.11;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2397,273,0 chrVIII 79512 . T C 2275 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.0742;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.98;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2308,264,0 chrVIII 79756 . T A 2602 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.23;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2635,291,0 chrVIII 79894 . T A 2787 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2820,315,0 chrVIII 80077 . A G 3118 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3151,360,0 chrVIII 80210 . G C 3196 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3229,369,0 chrVIII 80249 . G T 2959 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2992,327,0 chrVIII 80825 . G A 2079 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2112,240,0 chrVIII 81320 . T C 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=199;Dels=0.00;FS=11.106;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-2.274;QD=22.07;ReadPosRankSum=2.934;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4391,501,0 chrVIII 81666 . G C 3053 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.31;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3086,351,0 chrVIII 81685 . A G 2757 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.79;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2790,318,0 chrVIII 81881 . G A 63.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;DP=77;Dels=0.00;FS=39.283;HaplotypeScore=13.4403;MLEAC=1;MLEAF=0.500;MQ=50.96;MQ0=0;MQRankSum=-2.262;QD=0.82;ReadPosRankSum=-1.468;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:42,35:77:93:93,0,341 chrVIII 82351 . A C 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.265;QD=18.77;ReadPosRankSum=1.634;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2698,321,0 chrVIII 82486 . G C 2323 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.8213;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.74;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2356,267,0 chrVIII 82526 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=17.12;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2156,240,0 chrVIII 82550 . T G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.340;QD=15.97;ReadPosRankSum=2.400;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2396,276,0 chrVIII 82568 . C G 2720 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=15.54;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:2753,312,0 chrVIII 82570 . T A 2753 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=15.82;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2786,312,0 chrVIII 82588 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.5194;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=14.93;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2824,318,0 chrVIII 82858 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.7474;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.06;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4148,459,0 chrVIII 83128 . T C 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.228;DP=103;Dels=0.01;FS=5.903;HaplotypeScore=14.6461;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.753;QD=20.49;ReadPosRankSum=2.812;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2143,249,0 chrVIII 83441 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.35;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2766,303,0 chrVIII 83781 . A T 2316 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2349,258,0 chrVIII 83838 . T C 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=127;Dels=0.00;FS=7.087;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.342;QD=21.31;ReadPosRankSum=2.411;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2740,312,0 chrVIII 83933 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.16;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2626,291,0 chrVIII 83943 . T G 2523 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.38;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2556,291,0 chrVIII 84527 . T A 1486 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.08;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1519,171,0 chrVIII 84663 . C G 1386 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=22.00;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1419,165,0 chrVIII 84686 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=21.72;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1206,141,0 chrVIII 84687 . T C 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=5.643;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;MQRankSum=-1.606;QD=21.93;ReadPosRankSum=1.669;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1239,141,0 chrVIII 84699 . A G 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=51;Dels=0.00;FS=2.724;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;MQRankSum=-1.723;QD=18.27;ReadPosRankSum=2.354;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:965,108,0 chrVIII 84708 . G A 720 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=14.12;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:87:753,87,0 chrVIII 84777 . A C 2349 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.81;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2382,276,0 chrVIII 84820 . A G 2248 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.04;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2281,258,0 chrVIII 84829 . T C 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.461;QD=17.84;ReadPosRankSum=2.358;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1942,228,0 chrVIII 84887 . T C 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=1.003;QD=18.99;ReadPosRankSum=1.641;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2198,255,0 chrVIII 84920 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.15;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3027,342,0 chrVIII 84969 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.14;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3343,366,0 chrVIII 85033 . T A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.18;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3305,366,0 chrVIII 85109 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.84;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2075,237,0 chrVIII 85143 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.87;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1979,225,0 chrVIII 85164 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.55;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1995,225,0 chrVIII 85206 . T C 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=90;Dels=0.00;FS=3.653;HaplotypeScore=7.4592;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.233;QD=19.87;ReadPosRankSum=1.629;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1821,216,0 chrVIII 85374 . A G 457 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=19.04;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:57:490,57,0 chrVIII 85375 . T C 470 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=19.58;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:57:503,57,0 chrVIII 85389 . G T 298 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=18.62;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:36:331,36,0 chrVIII 85864 . A T 35.97 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.50;MQ0=20;QD=1.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:18,5:23:9:68,9,0 chrVIII 91572 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.35;MQ0=54;QD=0.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:53,3:56:6:55,6,0 chrVIII 91716 . A T 77.51 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.44;MQ0=17;QD=3.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,8:21:12:110,12,0 chrVIII 91813 . G C 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=5.2168;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=4;MQRankSum=2.783;QD=6.48;ReadPosRankSum=3.308;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:8,12:21:93:166,0,93 chrVIII 91860 . G A 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=18.21;MQ0=28;MQRankSum=2.814;QD=0.69;ReadPosRankSum=-2.920;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,5:48:63:63,0,221 chrVIII 92001 . T C 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.8735;MLEAC=1;MLEAF=0.500;MQ=12.00;MQ0=41;MQRankSum=1.788;QD=0.64;ReadPosRankSum=-0.380;SB=-7.195e-03 GT:AD:DP:GQ:PL 0/1:45,7:53:35:64,0,35 chrVIII 92232 . C T 239 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;QD=23.90;SB=-1.109e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:30:272,30,0 chrVIII 92264 . T C 175.03 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=21.88;SB=-7.977e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:24:208,24,0 chrVIII 92289 . G A 48.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;QD=16.32;SB=-2.421e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:81,9,0 chrVIII 92299 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=0.55;SB=-2.577e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:6:51,6,0 chrVIII 92406 . T C 291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;MQRankSum=-0.496;QD=20.79;ReadPosRankSum=1.488;SB=-1.669e+02 GT:AD:DP:GQ:PL 1/1:1,13:14:36:324,36,0 chrVIII 92491 . G A 1036 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=23.55;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1069,120,0 chrVIII 92522 . A T 680 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=17.00;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:713,84,0 chrVIII 92526 . A G 635 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;QD=15.49;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:81:668,81,0 chrVIII 92570 . C T 764 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=42.7387;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=13.64;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:797,90,0 chrVIII 92608 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.14;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1230,138,0 chrVIII 92625 . G A 1072 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=16.24;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1105,129,0 chrVIII 92658 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=18.07;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1334,153,0 chrVIII 92677 . T A 1098 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=15.25;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1131,126,0 chrVIII 92692 . T G 899 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=14.74;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:932,108,0 chrVIII 92735 . T C 1661 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=18.46;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1694,198,0 chrVIII 92759 . A C 2266 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=18.57;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2299,267,0 chrVIII 92864 . C T 4301.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=23.00;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4301,486,0 chrVIII 92891 . T G 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1948;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;MQRankSum=0.866;QD=22.92;ReadPosRankSum=1.712;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3966,453,0 chrVIII 92927 . G T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;QD=21.78;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3257,375,0 chrVIII 92971 . T C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.979;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;MQRankSum=0.991;QD=21.82;ReadPosRankSum=1.708;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3197,366,0 chrVIII 92978 . C G 3076 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=21.21;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3109,363,0 chrVIII 93014 . G C 2071 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0498;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=16.05;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2104,255,0 chrVIII 93026 . T C 1794 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;QD=14.24;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1827,210,0 chrVIII 93033 . C T 1957 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.7634;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.04;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1990,219,0 chrVIII 93035 . G A 1861 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.25;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1894,213,0 chrVIII 93055 . A G 1445 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=-0.183;QD=12.68;ReadPosRankSum=2.407;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1478,174,0 chrVIII 93056 . A G 1398 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=12.48;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1431,168,0 chrVIII 93062 . A G 1290 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=-0.076;QD=11.42;ReadPosRankSum=2.406;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1323,156,0 chrVIII 93068 . A G 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.754;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;MQRankSum=0.083;QD=11.40;ReadPosRankSum=3.754;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:5,100:105:99:1230,141,0 chrVIII 93086 . C T 1171 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=13.62;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1204,135,0 chrVIII 93088 . T C 1060 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=12.33;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1093,126,0 chrVIII 93095 . A G 1045 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=-0.056;QD=11.12;ReadPosRankSum=1.695;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1078,126,0 chrVIII 93101 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=10.58;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1059,123,0 chrVIII 93125 . C T 805 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=26.33;MQ0=0;QD=11.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:838,102,0 chrVIII 93128 . G C 805 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=26.48;MQ0=0;QD=11.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:838,102,0 chrVIII 93136 . C T 655 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=11.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:81:688,81,0 chrVIII 93137 . C T 652 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=11.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:81:685,81,0 chrVIII 93140 . C T 638 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.251;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;MQRankSum=1.342;QD=10.81;ReadPosRankSum=3.302;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,55:59:81:671,81,0 chrVIII 93143 . T C 635 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.341;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=1.200;QD=10.58;ReadPosRankSum=3.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,56:60:81:668,81,0 chrVIII 93146 . T C 633 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=10.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:81:666,81,0 chrVIII 93151 . T C 634 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9524;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=10.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:81:667,81,0 chrVIII 93153 . T C 638 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9524;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=10.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:81:671,81,0 chrVIII 93158 . G A 483 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=9.11;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:63:516,63,0 chrVIII 93159 . T A 491 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=9.26;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:63:524,63,0 chrVIII 93161 . C T 482 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=9.09;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:63:515,63,0 chrVIII 93164 . G C 503 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=9.15;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:66:536,66,0 chrVIII 93165 . G A 514 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=9.18;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,55:56:66:547,66,0 chrVIII 93251 . C T 934 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=22.78;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:967,111,0 chrVIII 93257 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=22.79;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:922,105,0 chrVIII 93284 . A G 279 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=15.50;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:312,39,0 chrVIII 93290 . C T 155.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=14.09;SB=-5.297e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:24:188,24,0 chrVIII 93398 . G A 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.64;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:132,15,0 chrVIII 93401 . A G 148.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=9.25;SB=-7.483e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:181,21,0 chrVIII 93407 . A G 180.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=10.00;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:213,24,0 chrVIII 93417 . T G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=9.90;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:231,27,0 chrVIII 93422 . G A 230 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=10.45;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:263,30,0 chrVIII 93425 . T C 223 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=10.14;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:256,30,0 chrVIII 93446 . T A 298 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=11.46;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:39:331,39,0 chrVIII 93450 . A G 291 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=10.39;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:39:324,39,0 chrVIII 93466 . T C 308 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.56;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:42:341,42,0 chrVIII 93467 . A G 272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=0.385;QD=7.56;ReadPosRankSum=0.385;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:36:305,36,0 chrVIII 93486 . C G 230 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=5.48;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:263,33,0 chrVIII 93500 . A G 144.06 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=3.69;SB=-1.641e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:21:177,21,0 chrVIII 93506 . G C 164.03 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=4.21;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:24:197,24,0 chrVIII 93509 . G A 173.03 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=4.12;SB=-9.704e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:24:206,24,0 chrVIII 93512 . G C 171.03 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=3.89;SB=-9.604e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:24:204,24,0 chrVIII 93518 . G A 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=2.43;SB=-7.014e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:18:157,18,0 chrVIII 93525 . T C 116.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;MQRankSum=-1.483;QD=2.04;ReadPosRankSum=2.877;SB=-4.314e+01 GT:AD:DP:GQ:PL 1/1:3,54:57:18:149,18,0 chrVIII 93533 . A T 259 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=4.32;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:33:292,33,0 chrVIII 93534 . T A 251 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=-0.618;QD=4.05;ReadPosRankSum=2.371;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:2,60:62:33:284,33,0 chrVIII 93546 . A G 516 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=6.62;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:63:549,63,0 chrVIII 93547 . T C 515 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=-1.469;QD=6.52;ReadPosRankSum=1.688;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,78:79:63:548,63,0 chrVIII 93555 . A G 592 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=7.40;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:72:625,72,0 chrVIII 93557 . G A 624 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=7.80;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:72:657,72,0 chrVIII 93558 . C T 599 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=7.49;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:72:632,72,0 chrVIII 93563 . T C 618 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=6.65;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:72:651,72,0 chrVIII 93566 . A T 609 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.77;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:72:642,72,0 chrVIII 93569 . A C 575 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:69:608,69,0 chrVIII 93571 . G A 595 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.00;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:69:628,69,0 chrVIII 93574 . T C 581 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.84;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:69:614,69,0 chrVIII 93578 . A G 537 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.71;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:69:570,69,0 chrVIII 93580 . G C 566 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.07;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:69:599,69,0 chrVIII 93581 . A G 532 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.65;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:69:565,69,0 chrVIII 93585 . T C 575 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.05;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:69:608,69,0 chrVIII 93602 . A G 515 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.437;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.541;QD=5.79;ReadPosRankSum=3.733;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:5,84:89:63:548,63,0 chrVIII 93638 . T C 113.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=8.70;SB=-1.331e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:18:146,18,0 chrVIII 93655 . G A 517 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=22.48;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:63:550,63,0 chrVIII 93659 . T A 547 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.271;DP=30;Dels=0.00;FS=8.751;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=0.231;QD=18.23;ReadPosRankSum=1.617;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:66:580,66,0 chrVIII 93665 . C T 847 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=20.66;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:880,99,0 chrVIII 93770 . A T 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=2.970;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=1.805;QD=22.57;ReadPosRankSum=2.404;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3611,411,0 chrVIII 93824 . T A 332 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=15.81;SB=-9.800e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:45:365,45,0 chrVIII 93830 . A G 225 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-1.159;QD=18.75;ReadPosRankSum=1.448;SB=-7.898e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:33:258,33,0 chrVIII 93833 . T C 153.03 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=15.30;SB=-1.038e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:186,24,0 chrVIII 93839 . G A 109.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.21;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:142,15,0 chrVIII 93842 . A G 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.52;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:157,18,0 chrVIII 93848 . T G 149.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.56;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:182,21,0 chrVIII 93857 . A G 265 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.38;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:33:298,33,0 chrVIII 93863 . A G 369 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.77;SB=-6.792e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:45:402,45,0 chrVIII 93872 . T C 517 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.83;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:60:550,60,0 chrVIII 93875 . G A 523 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.34;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:63:556,63,0 chrVIII 93878 . T G 591 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.77;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:72:624,72,0 chrVIII 93884 . T C 673 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:84:706,84,0 chrVIII 93896 . A G 905 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:938,108,0 chrVIII 93928 . G T 937 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=13.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:970,108,0 chrVIII 93929 . A G 948 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=13.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:981,108,0 chrVIII 93932 . A G 939 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=12.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:972,108,0 chrVIII 93935 . C T 956 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=12.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:989,108,0 chrVIII 93938 . C A 932 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=11.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:965,108,0 chrVIII 93950 . T C 905 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=11.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:938,108,0 chrVIII 93961 . A G 744 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=10.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:90:777,90,0 chrVIII 93962 . C T 781 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=11.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:90:814,90,0 chrVIII 93968 . A G 605 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=-1.048;QD=9.45;ReadPosRankSum=2.890;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,61:64:75:638,75,0 chrVIII 93971 . T G 592 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=10.57;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:72:625,72,0 chrVIII 93974 . G A 535 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=9.91;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:66:568,66,0 chrVIII 93977 . T C 327 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=7.43;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:42:360,42,0 chrVIII 93979 . A G 320 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;MQRankSum=-0.254;QD=7.27;ReadPosRankSum=2.338;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,42:44:42:353,42,0 chrVIII 93980 . A G 324 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=7.71;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:42:357,42,0 chrVIII 93983 . A G 321 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=7.64;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:42:354,42,0 chrVIII 93995 . G A 301 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=0;QD=10.38;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:39:334,39,0 chrVIII 93997 . A C 301 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=0;MQRankSum=0.896;QD=10.38;ReadPosRankSum=1.614;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:39:334,39,0 chrVIII 94007 . T C 211 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=8.79;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:30:244,30,0 chrVIII 94010 . T C 167.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;QD=7.59;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:200,24,0 chrVIII 94012 . A G 169.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;MQRankSum=0.788;QD=7.68;ReadPosRankSum=1.576;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:1,21:22:24:202,24,0 chrVIII 94022 . G T 143.06 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=11.00;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:176,21,0 chrVIII 94024 . C T 143.06 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=11.00;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:176,21,0 chrVIII 94034 . T G 84.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=10.53;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:117,15,0 chrVIII 94038 . A G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrVIII 94040 . T C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrVIII 94204 . G T 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=4.54;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:96,12,0 chrVIII 94208 . T C 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=4.17;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:95,12,0 chrVIII 94214 . G A 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=0;QD=3.79;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:97,12,0 chrVIII 94223 . T C 62.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=3.47;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:95,12,0 chrVIII 94226 . G A 66.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=3.70;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:99,12,0 chrVIII 94241 . G A 66.51 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=3.50;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:99,12,0 chrVIII 94256 . C T 66.51 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=3.50;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:99,12,0 chrVIII 94262 . T C 62.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=3.68;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:95,12,0 chrVIII 94271 . T G 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;QD=4.96;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:97,12,0 chrVIII 94274 . T G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=4.09;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:77,9,0 chrVIII 94277 . C T 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=4.00;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:76,9,0 chrVIII 94286 . A C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=5.12;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:73,9,0 chrVIII 94287 . T G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=5.12;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:73,9,0 chrVIII 94390 . C T 61.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=10.25;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:94,12,0 chrVIII 94414 . G A 600 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.68;MQ0=0;QD=17.65;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:72:633,72,0 chrVIII 94442 . C T 836 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;QD=20.90;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:869,99,0 chrVIII 94466 . T C 794 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=20.89;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:827,96,0 chrVIII 94484 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=21.94;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:87:779,87,0 chrVIII 94499 . G A 291 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;QD=22.38;SB=-6.600e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:36:324,36,0 chrVIII 94729 . A T 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.91;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:15:120,15,0 chrVIII 94730 . C T 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.28;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:15:131,15,0 chrVIII 94736 . T G 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.24;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:15:130,15,0 chrVIII 94737 . T C 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.18;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:15:128,15,0 chrVIII 94741 . T C 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.48;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:15:137,15,0 chrVIII 94981 . A G 177.03 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.84;MQ0=0;QD=2.13;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:24:210,24,0 chrVIII 95003 . G A 787 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;QD=8.55;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:93:820,93,0 chrVIII 96126 . A G 3194 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.3033;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.73;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3227,378,0 chrVIII 96228 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.4866;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.63;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3655,405,0 chrVIII 96393 . C T 3994.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.69;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3994,444,0 chrVIII 97160 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2963,321,0 chrVIII 97245 . G A 4376.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.28;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4376,483,0 chrVIII 97536 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=200;Dels=0.00;FS=5.980;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.457;QD=21.41;ReadPosRankSum=2.844;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4281,509,0 chrVIII 97599 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.145;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.725;QD=20.94;ReadPosRankSum=1.573;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4146,474,0 chrVIII 97650 . T C 4476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=213;Dels=0.00;FS=6.083;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.669;QD=21.01;ReadPosRankSum=2.403;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:4476,510,0 chrVIII 97715 . C T 7921.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=15.8713;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.50;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,332:337:99:7921,882,0 chrVIII 98284 . G A 1887 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=16.55;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,109:114:99:1920,213,0 chrVIII 98376 . C T 4957.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=26.23;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4957,549,0 chrVIII 98484 . A T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.56;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4205,465,0 chrVIII 98622 . C G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.8705;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.715;QD=15.35;ReadPosRankSum=0.146;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,200:209:99:3241,384,0 chrVIII 98643 . C A 2786 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.66;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:2819,321,0 chrVIII 99089 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2935;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.50;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3719,414,0 chrVIII 99112 . A G 4402.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.79;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4402,507,0 chrVIII 99909 . A C 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=215;Dels=0.00;FS=3.009;HaplotypeScore=18.4211;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.133;QD=20.33;ReadPosRankSum=2.415;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4372,513,0 chrVIII 101246 . A T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.01;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3913,435,0 chrVIII 101494 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.31;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3412,387,0 chrVIII 101512 . G T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.09;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3844,429,0 chrVIII 101857 . G A 4885.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.4272;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.31;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:4885,546,0 chrVIII 101927 . C T 4814.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.14;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4814,531,0 chrVIII 102030 . A G 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=210;Dels=0.00;FS=5.600;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.399;QD=21.30;ReadPosRankSum=2.899;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4472,510,0 chrVIII 102089 . T A 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=183;Dels=0.00;FS=10.032;HaplotypeScore=14.1207;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.456;QD=20.83;ReadPosRankSum=2.369;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3812,423,0 chrVIII 102157 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.6010;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.98;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4045,450,0 chrVIII 102389 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.38;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3402,390,0 chrVIII 102468 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=176;Dels=0.00;FS=3.034;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.667;QD=21.32;ReadPosRankSum=2.407;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3753,432,0 chrVIII 102818 . G C 4203.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.01;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4203,495,0 chrVIII 102879 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=182;Dels=0.00;FS=10.420;HaplotypeScore=17.2507;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.388;QD=21.69;ReadPosRankSum=2.961;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:3,176:182:99:3948,453,0 chrVIII 103046 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=178;Dels=0.00;FS=9.557;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.017;QD=22.02;ReadPosRankSum=2.870;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3919,459,0 chrVIII 103070 . T C 4045.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.72;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4045,468,0 chrVIII 103106 . G A 5317.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.06;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5317,582,0 chrVIII 103185 . G A 4751.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=21.3751;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.60;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4751,555,0 chrVIII 103247 . A T 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=3.217;HaplotypeScore=13.9948;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.443;QD=21.31;ReadPosRankSum=1.712;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3665,414,0 chrVIII 104032 . C A 2453 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2486,273,0 chrVIII 104426 . A C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.776;QD=19.11;ReadPosRankSum=1.613;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2250,252,0 chrVIII 104429 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.94;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2306,255,0 chrVIII 104498 . C T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9194;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.45;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3721,408,0 chrVIII 104568 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.20;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2365,264,0 chrVIII 105227 . C A 2199 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.5697;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.15;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2232,249,0 chrVIII 105292 . T G 2725 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.34;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2758,318,0 chrVIII 105464 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.67;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2021,225,0 chrVIII 105532 . C T 895 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:928,108,0 chrVIII 105578 . T G 361 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=16.41;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:45:394,45,0 chrVIII 105613 . T G 250 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.63;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:33:283,33,0 chrVIII 105621 . C T 230 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.43;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:263,30,0 chrVIII 105640 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=9.19;SB=-5.021e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:78,9,0 chrVIII 105670 . T A 60.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.791;QD=5.50;ReadPosRankSum=1.423;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:12:93,12,0 chrVIII 105787 . A G 1469 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.77;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1502,168,0 chrVIII 105848 . G C 977 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.24;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:46:99:1010,120,0 chrVIII 105958 . T C 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=3.364;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.433;QD=21.78;ReadPosRankSum=1.678;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2821,321,0 chrVIII 106126 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=112;Dels=0.00;FS=6.052;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.324;QD=22.09;ReadPosRankSum=2.936;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:3,106:112:99:2507,291,0 chrVIII 106261 . T A 2795 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2828,321,0 chrVIII 106321 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.5859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3100,342,0 chrVIII 106528 . T C 4771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=217;Dels=0.00;FS=2.883;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.449;QD=21.99;ReadPosRankSum=2.279;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4771,540,0 chrVIII 106822 . G A 4652.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.94;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4652,519,0 chrVIII 106947 . G A 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.709;QD=21.19;ReadPosRankSum=0.460;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3148,348,0 chrVIII 107008 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3874,426,0 chrVIII 107309 . A G 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=99;Dels=0.00;FS=10.142;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.439;QD=22.87;ReadPosRankSum=2.868;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2297,261,0 chrVIII 107522 . G A 1883 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=17.44;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1916,219,0 chrVIII 107541 . T C 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=3.022;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.725;QD=18.69;ReadPosRankSum=2.366;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2220,252,0 chrVIII 107597 . C A 2434 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=103.7799;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.79;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2467,270,0 chrVIII 107756 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.11;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2664,294,0 chrVIII 107831 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.50;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3549,399,0 chrVIII 107866 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.95;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3665,408,0 chrVIII 107993 . T A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.23;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3659,402,0 chrVIII 108387 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1522,168,0 chrVIII 108568 . G A 808 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:96:841,96,0 chrVIII 108672 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1592,177,0 chrVIII 109025 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=140;Dels=0.00;FS=4.239;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.728;QD=20.55;ReadPosRankSum=1.707;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2910,348,0 chrVIII 110021 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2083,231,0 chrVIII 110129 . T C 3108 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3141,354,0 chrVIII 110256 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.77;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2947,333,0 chrVIII 110305 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.57;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4101,456,0 chrVIII 110439 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.59;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3930,465,0 chrVIII 110685 . C T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4356,498,0 chrVIII 111245 . T C 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.935;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-1.447;QD=20.27;ReadPosRankSum=1.685;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3012,339,0 chrVIII 111246 . T C 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.875;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.746;QD=20.29;ReadPosRankSum=1.708;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2995,339,0 chrVIII 111464 . G C 945 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=21.48;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:978,117,0 chrVIII 111477 . G T 916 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=21.81;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:949,105,0 chrVIII 111581 . T G 484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.839;QD=15.61;ReadPosRankSum=1.509;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:63:517,63,0 chrVIII 111594 . A G 547 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.78;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:66:580,66,0 chrVIII 111623 . G T 1246 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.80;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1279,141,0 chrVIII 111695 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.33;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3483,411,0 chrVIII 111971 . C T 5665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=261;Dels=0.00;FS=3.963;HaplotypeScore=10.9243;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.007;QD=21.71;ReadPosRankSum=1.465;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:5665,615,0 chrVIII 112393 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.71;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3407,375,0 chrVIII 112455 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=16.5071;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.27;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3653,399,0 chrVIII 112492 . A T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.4213;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4498,507,0 chrVIII 112829 . A T 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.245;QD=23.95;ReadPosRankSum=1.714;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4599,510,0 chrVIII 112944 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1526;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.17;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2954,342,0 chrVIII 112966 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.45;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2853,318,0 chrVIII 113512 . A C 3090 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.06;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3123,357,0 chrVIII 114144 . A G 5599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=254;Dels=0.00;FS=2.967;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.633;QD=22.04;ReadPosRankSum=2.411;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:5599,642,0 chrVIII 114162 . G A 5694.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=3.9008;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.49;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5694,648,0 chrVIII 114255 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.34;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4133,477,0 chrVIII 114337 . G A 5390.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.82;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5390,597,0 chrVIII 114567 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4535,513,0 chrVIII 114924 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=22.29;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3990,453,0 chrVIII 115113 . G C 2932 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.40;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2965,345,0 chrVIII 115246 . A G 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=5.929;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.129;QD=24.37;ReadPosRankSum=1.695;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4605,513,0 chrVIII 115401 . T C 372.21 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=146.3064;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=2.642;QD=1.98;ReadPosRankSum=3.376;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:16:405,16,0 chrVIII 115445 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.85;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4109,468,0 chrVIII 115476 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.6866;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.27;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4521,501,0 chrVIII 115710 . T C 3159 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.06;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3192,360,0 chrVIII 115734 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.3207;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.75;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2904,321,0 chrVIII 115917 . A T 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=133;Dels=0.00;FS=8.209;HaplotypeScore=10.1976;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.102;QD=22.61;ReadPosRankSum=2.413;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3040,333,0 chrVIII 115977 . A T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.4447;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=23.41;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3909,438,0 chrVIII 116184 . A T 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;MQRankSum=-1.918;QD=19.82;ReadPosRankSum=2.410;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2511,288,0 chrVIII 116194 . G A 1955 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;QD=18.98;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1988,231,0 chrVIII 116195 . A G 1878 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=18.78;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1911,228,0 chrVIII 116198 . C A 2022 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;QD=18.90;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2055,237,0 chrVIII 116213 . G A 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.660;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;MQRankSum=-1.031;QD=16.49;ReadPosRankSum=1.114;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1418,142,0 chrVIII 116228 . G T 1147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.476;DP=75;Dels=0.00;FS=37.886;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;MQRankSum=-0.043;QD=15.29;ReadPosRankSum=4.454;SB=-3.901e+01 GT:AD:DP:GQ:PL 1/1:8,67:75:99:1180,129,0 chrVIII 116234 . A G 1158 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=15.24;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1191,138,0 chrVIII 116306 . T C 2326 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=21.94;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2359,276,0 chrVIII 116310 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=22.97;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2491,276,0 chrVIII 116318 . T C 2313 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;QD=22.46;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2346,264,0 chrVIII 116330 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=23.09;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2296,255,0 chrVIII 116384 . T C 657 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=17.76;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:690,81,0 chrVIII 116388 . C G 613 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=17.03;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:646,75,0 chrVIII 116442 . G A 34.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DP=26;Dels=0.00;FS=29.863;HaplotypeScore=10.8332;MLEAC=1;MLEAF=0.500;MQ=20.90;MQ0=7;MQRankSum=0.727;QD=1.31;ReadPosRankSum=1.957;SB=-2.127e+00 GT:AD:DP:GQ:PL 0/1:23,3:26:14:64,0,14 chrVIII 116445 . A T 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DP=26;Dels=0.00;FS=20.792;HaplotypeScore=10.8357;MLEAC=1;MLEAF=0.500;MQ=20.90;MQ0=7;MQRankSum=0.546;QD=1.15;ReadPosRankSum=0.895;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:14,3:26:36:60,0,36 chrVIII 116452 . G A 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DP=26;Dels=0.00;FS=29.863;HaplotypeScore=17.5651;MLEAC=1;MLEAF=0.500;MQ=20.90;MQ0=7;MQRankSum=0.839;QD=1.08;ReadPosRankSum=1.509;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:23,3:26:38:58,0,38 chrVIII 116463 . T G 92.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=14.1938;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=8;MQRankSum=-2.128;QD=2.98;ReadPosRankSum=2.237;SB=-7.324e+01 GT:AD:DP:GQ:PL 1/1:2,28:31:15:125,15,0 chrVIII 116466 . G A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;DP=36;Dels=0.00;FS=28.129;HaplotypeScore=23.3509;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=8;MQRankSum=0.883;QD=0.89;ReadPosRankSum=1.525;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:31,3:36:38:62,0,38 chrVIII 116479 . A T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;DP=49;Dels=0.00;FS=24.837;HaplotypeScore=23.8489;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=8;MQRankSum=1.427;QD=0.21;ReadPosRankSum=0.175;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:46,3:49:40:40,0,210 chrVIII 116565 . C T 726 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=6;QD=7.89;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:84:759,84,0 chrVIII 116644 . A C,T 31.78 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.100;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=10.35;MQ0=50;MQRankSum=-2.100;QD=0.50;ReadPosRankSum=2.100;SB=0.101 GT:AD:DP:GQ:PL 1/2:50,12,2:64:38:91,46,40,44,0,38 chrVIII 116801 . A T 1698 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=19.08;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1731,198,0 chrVIII 116923 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=16.99;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1919,213,0 chrVIII 116958 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=18.39;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2810,309,0 chrVIII 116975 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=18.41;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3145,351,0 chrVIII 116997 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.377;QD=19.82;ReadPosRankSum=2.422;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3548,408,0 chrVIII 117152 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.892;QD=22.26;ReadPosRankSum=1.712;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3807,432,0 chrVIII 117170 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=188;Dels=0.00;FS=2.921;HaplotypeScore=11.8252;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.440;QD=22.21;ReadPosRankSum=0.663;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4176,446,0 chrVIII 117292 . C A 2865 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.2197;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.04;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2898,324,0 chrVIII 117334 . C T 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.6860;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.062;QD=19.31;ReadPosRankSum=1.639;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2234,246,0 chrVIII 117335 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.1086;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.472;QD=19.30;ReadPosRankSum=1.701;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2175,246,0 chrVIII 117358 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.66;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1899,210,0 chrVIII 117412 . T C 2045 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.33;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2078,246,0 chrVIII 117417 . T A 2266 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.04;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2299,255,0 chrVIII 117423 . A C 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.559;QD=18.98;ReadPosRankSum=1.704;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2386,267,0 chrVIII 117631 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=12.9470;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.85;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2611,315,0 chrVIII 117701 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3119;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.04;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3661,411,0 chrVIII 117890 . A G 4801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=206;Dels=0.00;FS=3.031;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-2.054;QD=23.31;ReadPosRankSum=2.414;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4801,555,0 chrVIII 118068 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=182;Dels=0.00;FS=5.400;HaplotypeScore=13.5396;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.272;QD=20.72;ReadPosRankSum=2.961;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:3771,441,0 chrVIII 118187 . T C 3204 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3237,378,0 chrVIII 118687 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.24;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3981,456,0 chrVIII 118950 . C A 2780 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6539;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.72;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2813,315,0 chrVIII 119053 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.8327;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.51;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3045,333,0 chrVIII 119502 . C T 100.26 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:6:15:133,15,0 chrVIII 119535 . C T 75.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=15.10;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:108,12,0 chrVIII 119726 . A G 72.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.50;SB=-5.255e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:105,12,0 chrVIII 119759 . C T 187.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=12.47;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:220,24,0 chrVIII 119813 . A G 361 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=17.19;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:45:394,45,0 chrVIII 119946 . A G 1779 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.52;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1812,216,0 chrVIII 120184 . G A 5273.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=20.4488;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.83;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5273,591,0 chrVIII 120226 . A G 5999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=266;Dels=0.00;FS=5.465;HaplotypeScore=5.8464;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.168;QD=22.55;ReadPosRankSum=1.719;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,263:266:99:5999,678,0 chrVIII 120247 . C T 6166.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.18;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6166,684,0 chrVIII 120364 . G A 6981.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.74;SB=-3.596e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:6981,777,0 chrVIII 120385 . T G 6390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=23.3748;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.589;QD=20.68;ReadPosRankSum=-0.204;SB=-3.087e+03 GT:AD:DP:GQ:PL 1/1:1,305:309:99:6390,752,0 chrVIII 120445 . A G 7465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=333;Dels=0.00;FS=2.812;HaplotypeScore=13.2985;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.514;QD=22.42;ReadPosRankSum=2.390;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:2,330:333:99:7465,855,0 chrVIII 121477 . A T 5546.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=10.6008;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.82;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5546,618,0 chrVIII 121618 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.29;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2247,246,0 chrVIII 121787 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=4.412;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.239;QD=20.66;ReadPosRankSum=1.673;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1252,144,0 chrVIII 121827 . T C 1857 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.21;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1890,219,0 chrVIII 121873 . A T 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.993;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7430;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.837;QD=14.36;ReadPosRankSum=0.564;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1325,153,0 chrVIII 121877 . G C 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.974;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.9706;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=1.862;QD=13.91;ReadPosRankSum=1.330;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1271,147,0 chrVIII 121987 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.863;QD=22.13;ReadPosRankSum=1.967;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,105:109:99:2445,279,0 chrVIII 122634 . G A 62.51 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=0.43;SB=-5.352e+01 GT:AD:DP:GQ:PL 1/1:0,144:144:12:95,12,0 chrVIII 122655 . G A 3338.01 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=20.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3338,369,0 chrVIII 122674 . A G 2947 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=-1.590;QD=18.19;ReadPosRankSum=2.932;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:2980,342,0 chrVIII 122866 . A T 734 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=13.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:84:767,84,0 chrVIII 122880 . T C 1251 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.938;QD=14.22;ReadPosRankSum=2.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1284,150,0 chrVIII 123006 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0462;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.66;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3266,360,0 chrVIII 123099 . T C 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=217;Dels=0.00;FS=3.012;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.040;QD=21.83;ReadPosRankSum=2.427;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4737,546,0 chrVIII 123320 . T C 5459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=21.3611;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.176;QD=21.92;ReadPosRankSum=1.676;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5459,627,0 chrVIII 123473 . A G 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=222;Dels=0.00;FS=6.199;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.310;QD=22.34;ReadPosRankSum=2.416;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4960,564,0 chrVIII 123592 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=20.04;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3847,423,0 chrVIII 123624 . T C 3102 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=17.43;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3135,360,0 chrVIII 123625 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;QD=18.28;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3250,363,0 chrVIII 123639 . G T 2946 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=156.9347;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=16.19;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2979,327,0 chrVIII 123678 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=200;Dels=0.00;FS=2.988;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=-0.353;QD=17.11;ReadPosRankSum=2.425;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:3421,402,0 chrVIII 123814 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=16.80;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1293,144,0 chrVIII 123878 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=18.27;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1714,201,0 chrVIII 123915 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.19;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1555,180,0 chrVIII 124029 . T C 562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.868;QD=17.03;ReadPosRankSum=2.301;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:66:595,66,0 chrVIII 124092 . T A 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.963;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.476;QD=22.16;ReadPosRankSum=2.353;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1717,195,0 chrVIII 124457 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.747;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.911;QD=20.44;ReadPosRankSum=1.712;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3598,414,0 chrVIII 124744 . G A 5203.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.2069;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5203,567,0 chrVIII 125040 . A G 5173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=229;Dels=0.00;FS=2.649;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.206;QD=22.59;ReadPosRankSum=2.417;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5173,597,0 chrVIII 125084 . T C 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=8.540;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.478;QD=21.30;ReadPosRankSum=2.426;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4537,513,0 chrVIII 125108 . G A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.38;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4198,468,0 chrVIII 125140 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.16;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3755,441,0 chrVIII 125249 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.44;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3431,384,0 chrVIII 125273 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=3.286;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.358;QD=19.34;ReadPosRankSum=1.693;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3461,411,0 chrVIII 125354 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.34;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4004,450,0 chrVIII 125356 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.778;QD=19.00;ReadPosRankSum=1.699;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:3952,447,0 chrVIII 125441 . G A 4844.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.3331;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.18;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4844,531,0 chrVIII 125465 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.34;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4803,546,0 chrVIII 125771 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.00;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2952,327,0 chrVIII 125900 . T G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2894;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.241;QD=20.22;ReadPosRankSum=2.234;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3026,363,0 chrVIII 125937 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.2373;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-0.663;QD=23.39;ReadPosRankSum=1.673;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4116,462,0 chrVIII 125980 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.78;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2812,318,0 chrVIII 126131 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=3.729;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;MQRankSum=-0.225;QD=14.32;ReadPosRankSum=1.713;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:2596,297,0 chrVIII 126142 . C G 2134 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=199.5141;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=13.34;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2167,249,0 chrVIII 126148 . C A 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=154;Dels=0.01;FS=6.283;HaplotypeScore=224.2354;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;MQRankSum=-1.576;QD=12.08;ReadPosRankSum=2.417;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:1893,213,0 chrVIII 126255 . T C 2326 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.26;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2359,264,0 chrVIII 126397 . T G 2760 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=20.91;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2793,318,0 chrVIII 126572 . T C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.552;QD=24.23;ReadPosRankSum=1.597;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1899,216,0 chrVIII 126701 . A G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=101.3379;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.517;QD=21.24;ReadPosRankSum=1.702;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2476,282,0 chrVIII 126792 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.3321;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=23.22;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2262,252,0 chrVIII 128125 . A G 3027 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3060,345,0 chrVIII 128904 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.16;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3576,396,0 chrVIII 129265 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.75;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4034,447,0 chrVIII 129665 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.37;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1887,216,0 chrVIII 130524 . G C 2668 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.87;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2701,315,0 chrVIII 130652 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=6.673;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.324;QD=21.74;ReadPosRankSum=2.408;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2598,297,0 chrVIII 130692 . T C 2039 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.81;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2072,243,0 chrVIII 131216 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.02;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3385,372,0 chrVIII 131324 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=207;Dels=0.00;FS=4.253;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.039;QD=19.75;ReadPosRankSum=1.698;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4089,483,0 chrVIII 131505 . T A 3197 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3230,366,0 chrVIII 131716 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.95;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2379,267,0 chrVIII 131927 . T A 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=107;Dels=0.00;FS=5.561;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.047;QD=24.09;ReadPosRankSum=1.764;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2611,288,0 chrVIII 132165 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.31;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2853,324,0 chrVIII 132496 . A G 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=4.003;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.317;QD=21.15;ReadPosRankSum=1.695;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2021,240,0 chrVIII 132728 . A C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=6.592;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.395;QD=22.45;ReadPosRankSum=2.413;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3041,348,0 chrVIII 133140 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=24.02;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1258,138,0 chrVIII 133231 . T G 1051 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=22.36;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1084,126,0 chrVIII 133235 . T C 1045 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=21.77;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1078,123,0 chrVIII 133644 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrVIII 134085 . G A 153.06 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.12;SB=-7.490e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:186,21,0 chrVIII 134098 . T C 378 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.69;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:411,48,0 chrVIII 134102 . T A 393 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.08;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:426,48,0 chrVIII 134107 . T C 405 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.38;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:438,48,0 chrVIII 134109 . A T 393 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.08;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:426,48,0 chrVIII 134110 . T C 409 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.49;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:442,48,0 chrVIII 134113 . G A 406 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.41;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:439,48,0 chrVIII 134114 . A C 376 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.64;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:409,48,0 chrVIII 134115 . A C 375 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.62;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:408,48,0 chrVIII 134117 . T C 402 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=-1.733;QD=10.05;ReadPosRankSum=1.646;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:48:435,48,0 chrVIII 134124 . T A 418 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=8.20;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:51:451,51,0 chrVIII 134126 . T C 453 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;MQRankSum=-2.267;QD=8.39;ReadPosRankSum=2.313;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,52:54:57:486,57,0 chrVIII 134195 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.41;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1489,168,0 chrVIII 134524 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3573,393,0 chrVIII 134769 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.45;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2480,285,0 chrVIII 134882 . C A 2417 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.59;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2450,270,0 chrVIII 135273 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.59;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1750,192,0 chrVIII 135278 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.43;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1662,183,0 chrVIII 135375 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.25;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2859,324,0 chrVIII 135729 . T G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=3.129;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.638;QD=23.07;ReadPosRankSum=1.701;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2617,306,0 chrVIII 135947 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2275,255,0 chrVIII 136088 . G C 2566 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.89;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2599,303,0 chrVIII 136089 . C A 2693 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.04;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2726,306,0 chrVIII 136431 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.36;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2265,243,0 chrVIII 136744 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=21.78;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1427,159,0 chrVIII 137028 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7687;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.22;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3948,470,0 chrVIII 137997 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=19.6787;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.79;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,175:182:99:3783,426,0 chrVIII 138342 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.38;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3260,360,0 chrVIII 138375 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.80;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3208,351,0 chrVIII 138502 . T G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=139;Dels=0.00;FS=12.971;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-2.254;QD=18.85;ReadPosRankSum=2.950;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2653,309,0 chrVIII 138510 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8680;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.85;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2748,318,0 chrVIII 138587 . T C 2772 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.72;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2805,321,0 chrVIII 138887 . A T 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=3.945;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.034;QD=23.85;ReadPosRankSum=1.704;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2991,333,0 chrVIII 139107 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=3.430;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.749;QD=23.62;ReadPosRankSum=1.708;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3331,375,0 chrVIII 139199 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=21.21;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2557,282,0 chrVIII 139207 . G C 2508 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.2694;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.00;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2541,291,0 chrVIII 139248 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.84;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2831,309,0 chrVIII 139383 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.96;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2758,312,0 chrVIII 139404 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=20.89;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2999,327,0 chrVIII 139405 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=20.43;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2955,324,0 chrVIII 139506 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.85;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2478,279,0 chrVIII 139743 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.52;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2063,234,0 chrVIII 139752 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.95;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1852,213,0 chrVIII 139803 . C T 1342 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=15.98;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1375,159,0 chrVIII 139810 . A T 1307 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.285;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-1.095;QD=15.75;ReadPosRankSum=3.328;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:4,79:83:99:1340,156,0 chrVIII 139811 . T A 1339 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=84;Dels=0.02;FS=15.238;HaplotypeScore=4.4291;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=-0.527;QD=15.94;ReadPosRankSum=3.347;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:4,78:82:99:1372,156,0 chrVIII 139958 . A T 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=4.685;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.450;QD=23.14;ReadPosRankSum=1.663;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2347,261,0 chrVIII 140004 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=25.00;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2583,282,0 chrVIII 140065 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.67;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2295,258,0 chrVIII 140068 . T G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.587;QD=18.97;ReadPosRankSum=1.702;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2215,258,0 chrVIII 140398 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=22.61;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4726,528,0 chrVIII 140403 . G A 4710.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.54;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4710,525,0 chrVIII 140755 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=181;Dels=0.00;FS=5.400;HaplotypeScore=16.4894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.028;QD=22.76;ReadPosRankSum=2.906;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4119,474,0 chrVIII 140905 . T C 5159.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.6507;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.59;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5159,608,0 chrVIII 141130 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.93;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4040,453,0 chrVIII 141325 . C G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.99;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3633,414,0 chrVIII 141479 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=18.33;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2324,258,0 chrVIII 141607 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.83;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3035,330,0 chrVIII 141685 . A G 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=3.051;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-0.434;QD=15.72;ReadPosRankSum=2.311;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1165,132,0 chrVIII 141692 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=16.71;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1253,138,0 chrVIII 141734 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.84;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1955,216,0 chrVIII 141841 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.9269;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.72;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2312,255,0 chrVIII 141876 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=15.78;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2289,255,0 chrVIII 141885 . A G 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.4878;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.333;QD=15.75;ReadPosRankSum=0.814;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,150:153:99:2443,263,0 chrVIII 142299 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.5178;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.28;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4234,486,0 chrVIII 142302 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=3.4664;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.582;QD=16.05;ReadPosRankSum=1.691;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:4077,468,0 chrVIII 142800 . G C 3918.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.77;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3918,456,0 chrVIII 142863 . A G 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=193;Dels=0.00;FS=2.976;HaplotypeScore=15.1774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.672;QD=21.11;ReadPosRankSum=2.386;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4075,468,0 chrVIII 143543 . T C 5423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=258;Dels=0.00;FS=9.464;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.119;QD=21.02;ReadPosRankSum=2.510;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:6,252:258:99:5423,600,0 chrVIII 143727 . C T 4471.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.60;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4471,516,0 chrVIII 143824 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8176;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.65;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3529,408,0 chrVIII 143930 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.06;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3209,360,0 chrVIII 143949 . T C 203.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=144.9220;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=1.23;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,22:163:27:236,27,0 chrVIII 144253 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.680;DP=173;Dels=0.00;FS=19.644;HaplotypeScore=14.8846;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.383;QD=20.28;ReadPosRankSum=3.523;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:5,166:173:99:3509,402,0 chrVIII 144280 . G T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.4641;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.72;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3729,414,0 chrVIII 144393 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.6381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.386;QD=22.73;ReadPosRankSum=1.709;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3409,390,0 chrVIII 144688 . T C 5787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=259;Dels=0.00;FS=3.455;HaplotypeScore=15.4852;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.815;QD=22.34;ReadPosRankSum=1.719;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:1,256:259:99:5787,651,0 chrVIII 144730 . A G 5037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=249;Dels=0.00;FS=2.779;HaplotypeScore=22.9899;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.470;QD=20.23;ReadPosRankSum=2.430;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5037,570,0 chrVIII 144796 . C G 5238.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=20.8703;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.83;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5238,594,0 chrVIII 145105 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.74;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3323,366,0 chrVIII 145255 . T G 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.076;QD=21.45;ReadPosRankSum=1.712;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3690,432,0 chrVIII 145315 . G C 3933.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.7234;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.14;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3933,453,0 chrVIII 145363 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.24;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3998,453,0 chrVIII 145441 . C T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4238;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.72;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4158,477,0 chrVIII 145579 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.1517;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.692;QD=20.96;ReadPosRankSum=0.604;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3668,405,0 chrVIII 145684 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3607,402,0 chrVIII 145768 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.9729;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.51;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3511,402,0 chrVIII 145861 . G C 4166.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.04;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4166,477,0 chrVIII 146331 . T A 966 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;QD=16.37;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:999,114,0 chrVIII 146334 . T G 886 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;MQRankSum=-1.732;QD=17.72;ReadPosRankSum=1.525;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:919,108,0 chrVIII 146335 . G T 937 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;MQRankSum=-1.732;QD=19.12;ReadPosRankSum=1.662;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:970,108,0 chrVIII 146681 . G T 74.51 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=2.40;SB=-1.085e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:12:107,12,0 chrVIII 146703 . C T 495 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=46.5750;MLEAC=2;MLEAF=1.00;MQ=34.01;MQ0=0;QD=9.71;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:63:528,63,0 chrVIII 146719 . A T 885 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=12.83;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:918,102,0 chrVIII 146758 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=18.43;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1636,189,0 chrVIII 146800 . A G 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;MQRankSum=-0.439;QD=19.59;ReadPosRankSum=1.686;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1502,171,0 chrVIII 146822 . C A 1629 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=20.88;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1662,189,0 chrVIII 146894 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=24.63;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3112,348,0 chrVIII 146927 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.06;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2524,279,0 chrVIII 146947 . G A 2218 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=22.40;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2251,258,0 chrVIII 146980 . C A 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=91;Dels=0.00;FS=3.005;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=0.725;QD=20.99;ReadPosRankSum=1.547;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1943,213,0 chrVIII 147004 . C G 1628 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.61;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1661,189,0 chrVIII 147047 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.50;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2575,282,0 chrVIII 147161 . C A 2747 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.4056;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.63;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2780,318,0 chrVIII 147236 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.69;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2801,315,0 chrVIII 147327 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.728;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.503;QD=22.22;ReadPosRankSum=1.686;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3378,384,0 chrVIII 147504 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.79;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3647,414,0 chrVIII 147540 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.71;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3031,336,0 chrVIII 147558 . A G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.286;QD=21.28;ReadPosRankSum=2.322;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2502,294,0 chrVIII 147573 . A C 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.530;QD=22.00;ReadPosRankSum=2.404;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2387,270,0 chrVIII 147641 . G C 2167 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.88;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2200,252,0 chrVIII 147667 . G C 1637 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.72;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1670,189,0 chrVIII 147745 . C T 706 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.10;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:87:739,87,0 chrVIII 147763 . G T 699 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.97;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:81:732,81,0 chrVIII 147843 . T C 479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.654;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.4743;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.702;QD=15.97;ReadPosRankSum=3.142;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:4,26:30:60:512,60,0 chrVIII 148132 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=160;Dels=0.00;FS=9.218;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.801;QD=20.21;ReadPosRankSum=2.387;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3265,375,0 chrVIII 148275 . T C 1887 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.50;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1920,222,0 chrVIII 148297 . T A 2073 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.37;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2106,231,0 chrVIII 148334 . T A 2403 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.38;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2436,276,0 chrVIII 148409 . T G 2298 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.1532;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.70;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2331,270,0 chrVIII 148418 . C T 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=109;Dels=0.00;FS=3.819;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.065;QD=20.16;ReadPosRankSum=1.667;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,105:109:99:2230,249,0 chrVIII 148456 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.22;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2855,324,0 chrVIII 148745 . C A 2649 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.86;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2682,300,0 chrVIII 148861 . G T 1389 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.05;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1422,159,0 chrVIII 148930 . G T 1421 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=17.76;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1454,171,0 chrVIII 148943 . T G 1644 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.90;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1677,189,0 chrVIII 149077 . C T 364 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=19.16;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:45:397,45,0 chrVIII 149078 . C A 359 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=18.89;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:45:392,45,0 chrVIII 149080 . A T 365 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=20.28;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:45:398,45,0 chrVIII 149233 . A G 793 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=22.03;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:826,93,0 chrVIII 149253 . A G 758 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=32.6297;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=20.49;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:791,90,0 chrVIII 149305 . G T 1190 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=17.76;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1223,141,0 chrVIII 149332 . C T 1713 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.04;FS=0.000;HaplotypeScore=6.5832;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=16.79;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1746,198,0 chrVIII 149347 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.3172;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=21.89;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2769,315,0 chrVIII 149376 . C A 2500 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.93;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2533,282,0 chrVIII 149444 . T C 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=2.863;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.073;QD=22.18;ReadPosRankSum=2.362;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1896,216,0 chrVIII 149466 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.93;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1959,228,0 chrVIII 149511 . A G 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=0.567;QD=18.27;ReadPosRankSum=1.702;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2152,255,0 chrVIII 149519 . T C 2276 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.79;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2309,264,0 chrVIII 149564 . A C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-1.262;QD=17.05;ReadPosRankSum=1.658;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,139:144:99:2488,282,0 chrVIII 149577 . A G 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=-0.781;QD=16.41;ReadPosRankSum=2.414;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2331,273,0 chrVIII 149614 . T C 2387 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=16.93;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2420,276,0 chrVIII 149622 . A G 2349 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.3951;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=16.54;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2382,276,0 chrVIII 149758 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.8051;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.17;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2848,336,0 chrVIII 149808 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.30;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3612,393,0 chrVIII 149856 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=23.37;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3646,399,0 chrVIII 149906 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.67;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3537,393,0 chrVIII 149962 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.83;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3904,453,0 chrVIII 150021 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.83;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3046,339,0 chrVIII 150079 . G A 2917 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=18.70;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2950,333,0 chrVIII 150081 . A G 2920 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=18.84;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2953,336,0 chrVIII 150083 . C T 3001 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.24;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3034,333,0 chrVIII 150089 . T C 3086 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.236;QD=17.53;ReadPosRankSum=1.673;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3119,363,0 chrVIII 150338 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.837;QD=20.22;ReadPosRankSum=1.674;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2460,282,0 chrVIII 150392 . A T 1830 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.53;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1863,213,0 chrVIII 150444 . T C 2052 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=22.80;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2085,243,0 chrVIII 150470 . A G 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;MQRankSum=-0.742;QD=20.18;ReadPosRankSum=1.687;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1587,189,0 chrVIII 150476 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=21.14;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1534,171,0 chrVIII 150487 . T A 1376 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.94;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1409,165,0 chrVIII 150619 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=21.00;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1713,192,0 chrVIII 150639 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=20.26;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1593,183,0 chrVIII 150659 . T C 1086 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=16.45;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1119,132,0 chrVIII 150667 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.2954;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=16.82;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1126,129,0 chrVIII 150729 . T C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=103;Dels=0.00;FS=3.043;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-1.111;QD=20.48;ReadPosRankSum=2.402;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2142,246,0 chrVIII 150760 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=20.01;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2574,285,0 chrVIII 150819 . A G 1393 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;QD=13.27;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1426,165,0 chrVIII 150824 . G A 1346 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=12.24;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1379,159,0 chrVIII 150828 . C T 1279 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=11.84;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1312,153,0 chrVIII 150873 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=13.76;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1726,198,0 chrVIII 150894 . T C 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;MQRankSum=-1.261;QD=14.99;ReadPosRankSum=1.704;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1907,225,0 chrVIII 150909 . C G 1906 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=13.91;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:1939,228,0 chrVIII 150921 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.297;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=-0.037;QD=15.77;ReadPosRankSum=1.708;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2257,264,0 chrVIII 150972 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=19.56;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2928,333,0 chrVIII 151012 . A G 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.358;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=0.739;QD=21.75;ReadPosRankSum=1.659;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3143,366,0 chrVIII 151048 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-0.062;QD=18.53;ReadPosRankSum=1.657;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2608,312,0 chrVIII 151049 . A G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=6.115;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=0.929;QD=19.06;ReadPosRankSum=2.379;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2702,312,0 chrVIII 151069 . G C 2582 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=18.99;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2615,306,0 chrVIII 151118 . C G 2969 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.66;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3002,345,0 chrVIII 151206 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.98;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2882,318,0 chrVIII 151416 . T C 1801 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=0.613;QD=18.76;ReadPosRankSum=1.696;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1834,210,0 chrVIII 151417 . G A 1863 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.41;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1896,210,0 chrVIII 151418 . C T 1880 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.38;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1913,210,0 chrVIII 151640 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.60;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3540,405,0 chrVIII 151670 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.89;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3733,408,0 chrVIII 151816 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2522;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.92;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2644,291,0 chrVIII 151824 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=143;Dels=0.00;FS=2.859;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.514;QD=18.73;ReadPosRankSum=2.345;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2711,315,0 chrVIII 152076 . C A 2159 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=21.38;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2192,243,0 chrVIII 152094 . A C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-0.035;QD=18.66;ReadPosRankSum=1.628;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1899,219,0 chrVIII 152098 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.21;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1973,222,0 chrVIII 152121 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=16.66;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1616,189,0 chrVIII 152274 . C T 2448 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=21.66;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2481,276,0 chrVIII 152278 . C T 2353 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=21.01;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2386,261,0 chrVIII 152281 . T G 2188 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.64;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2221,255,0 chrVIII 152382 . T A 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=4.061;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.732;QD=23.43;ReadPosRankSum=1.700;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2540,285,0 chrVIII 152397 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.57;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2626,291,0 chrVIII 152466 . C A 3116 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.43;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3149,357,0 chrVIII 152578 . C G 2242 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.88;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2275,261,0 chrVIII 152625 . T C 2680 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.93;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2713,306,0 chrVIII 152677 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.44;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2541,282,0 chrVIII 152802 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.953;QD=21.48;ReadPosRankSum=1.703;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2611,300,0 chrVIII 152946 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.95;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2695,306,0 chrVIII 153195 . A G 2480 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.40;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2513,288,0 chrVIII 153271 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.39;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2092,243,0 chrVIII 153282 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9624;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.37;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2009,234,0 chrVIII 153420 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.92;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3756,414,0 chrVIII 153557 . G A 4562.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.07;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4562,501,0 chrVIII 153651 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.88;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3487,387,0 chrVIII 153731 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=181;Dels=0.00;FS=9.840;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.077;QD=21.01;ReadPosRankSum=2.326;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3802,455,0 chrVIII 153881 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.02;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2335,261,0 chrVIII 153900 . T G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=3.478;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.106;QD=21.44;ReadPosRankSum=1.626;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2156,252,0 chrVIII 153957 . G C 2244 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.62;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2277,267,0 chrVIII 154229 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.14;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1999,228,0 chrVIII 154381 . A G 2205 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.78;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2238,252,0 chrVIII 154608 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2110,243,0 chrVIII 154746 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2707,300,0 chrVIII 154812 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2754,312,0 chrVIII 155186 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.293;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.326;QD=23.99;ReadPosRankSum=1.701;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2720,306,0 chrVIII 155567 . G A 2446 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.44;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2479,273,0 chrVIII 155587 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3372;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.05;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2622,291,0 chrVIII 156307 . T C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=3.726;HaplotypeScore=9.7359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.263;QD=24.26;ReadPosRankSum=1.704;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3065,348,0 chrVIII 156420 . T C 3094 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.26;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3127,363,0 chrVIII 156477 . A G 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.627;QD=21.44;ReadPosRankSum=1.695;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:2091,243,0 chrVIII 156686 . A G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.045;QD=19.66;ReadPosRankSum=1.702;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2294,261,0 chrVIII 156690 . A C 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-1.307;QD=18.82;ReadPosRankSum=1.702;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2178,249,0 chrVIII 156698 . T G 2093 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=18.36;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2126,243,0 chrVIII 156724 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=19.01;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2561,282,0 chrVIII 156786 . T G 2390 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.12;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2423,279,0 chrVIII 156789 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.76;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2453,282,0 chrVIII 156903 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=23.43;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2915,324,0 chrVIII 156924 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.07;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2778,312,0 chrVIII 157077 . A G 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.732;QD=22.46;ReadPosRankSum=1.670;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2549,294,0 chrVIII 157098 . A G 2108 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.29;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2141,249,0 chrVIII 157260 . C A 2147 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.69;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2180,249,0 chrVIII 157305 . A G 1826 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.54;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1859,213,0 chrVIII 157469 . A C 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.00;FS=2.638;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.466;QD=20.89;ReadPosRankSum=2.360;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1767,204,0 chrVIII 157495 . T A 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=70;Dels=0.00;FS=2.119;HaplotypeScore=4.8896;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.873;QD=19.59;ReadPosRankSum=2.568;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:4,66:70:99:1404,159,0 chrVIII 157497 . A T 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.581;DP=71;Dels=0.01;FS=6.214;HaplotypeScore=4.8896;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.087;QD=19.79;ReadPosRankSum=2.465;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1438,162,0 chrVIII 157588 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=19.78;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1358,153,0 chrVIII 157604 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=19.25;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1438,156,0 chrVIII 157612 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8787;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=16.49;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1319,150,0 chrVIII 158110 . C T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.4726;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.33;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4221,462,0 chrVIII 158374 . A G 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.374;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.8549;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.673;QD=21.45;ReadPosRankSum=1.417;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3776,402,0 chrVIII 158547 . T C 2799 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2832,324,0 chrVIII 158674 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.35;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2205,246,0 chrVIII 158707 . T A 2424 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2457,273,0 chrVIII 158737 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.30;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2674,303,0 chrVIII 159130 . A C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.8687;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.475;QD=19.10;ReadPosRankSum=1.716;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4163,477,0 chrVIII 159136 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.102;DP=224;Dels=0.00;FS=8.940;HaplotypeScore=6.6726;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.561;QD=18.08;ReadPosRankSum=3.390;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:4,220:224:99:4050,465,0 chrVIII 159406 . G T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.95;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3947,438,0 chrVIII 159599 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=21.66;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3725,423,0 chrVIII 159794 . T G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.465;DP=177;Dels=0.00;FS=155.260;HaplotypeScore=31.5734;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=1.119;QD=0.06;ReadPosRankSum=-0.160;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,47:177:41:41,0,2142 chrVIII 159887 . A C 4451.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.82;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4451,524,0 chrVIII 159962 . G A 5042.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.12;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5042,555,0 chrVIII 160782 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3664,420,0 chrVIII 161715 . C T 892 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=16.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:925,105,0 chrVIII 161791 . G T 164.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=0.943;QD=3.42;ReadPosRankSum=-2.460;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,19:48:99:194,0,345 chrVIII 161874 . A T 2878 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.21;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2911,327,0 chrVIII 161895 . T C 3039 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.13;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3072,354,0 chrVIII 162108 . A G 5746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=268;Dels=0.00;FS=4.292;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.143;QD=21.44;ReadPosRankSum=1.680;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,265:268:99:5746,683,0 chrVIII 162530 . T C 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=240;Dels=0.00;FS=3.103;HaplotypeScore=18.3610;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.060;QD=20.71;ReadPosRankSum=1.688;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:2,236:240:99:4970,573,0 chrVIII 163422 . G C 3055 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.2268;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.64;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3088,357,0 chrVIII 163731 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.77;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3396,378,0 chrVIII 164274 . A G 3147 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3180,372,0 chrVIII 164387 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3496,378,0 chrVIII 164530 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3185,360,0 chrVIII 164863 . C T 1944 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=16.90;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1977,225,0 chrVIII 164864 . A G 1934 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;MQRankSum=-0.755;QD=16.53;ReadPosRankSum=1.614;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1967,231,0 chrVIII 164870 . T C 2038 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=11.263;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;MQRankSum=-1.470;QD=16.57;ReadPosRankSum=2.390;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2071,234,0 chrVIII 164881 . C A 1975 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=16.06;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2008,219,0 chrVIII 164891 . T C 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=4.364;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=-1.732;QD=16.37;ReadPosRankSum=1.701;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1867,213,0 chrVIII 165351 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,153:158:99:3398,375,0 chrVIII 165413 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.65;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2999,333,0 chrVIII 165566 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=126;Dels=0.00;FS=6.630;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.005;QD=20.16;ReadPosRankSum=2.391;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2573,303,0 chrVIII 165647 . A G 3063 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.42;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3096,357,0 chrVIII 165698 . A G 2850 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.11;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2883,339,0 chrVIII 165727 . G A 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.703;QD=21.94;ReadPosRankSum=0.387;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2688,297,0 chrVIII 165797 . T C 2938 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.29;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2971,342,0 chrVIII 165835 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.43;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3374,387,0 chrVIII 165867 . T A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3739,408,0 chrVIII 166195 . A G 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=193;Dels=0.00;FS=9.306;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.807;QD=22.27;ReadPosRankSum=2.964;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4299,486,0 chrVIII 166209 . C T 4149.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.72;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4149,456,0 chrVIII 166655 . C G 2642 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2675,312,0 chrVIII 166793 . A G 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.827;QD=20.35;ReadPosRankSum=1.701;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2292,267,0 chrVIII 167135 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4229,474,0 chrVIII 167277 . T C 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=6.6976;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.022;QD=22.57;ReadPosRankSum=2.117;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3860,424,0 chrVIII 167313 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.73;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3842,423,0 chrVIII 167453 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.75;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2338,264,0 chrVIII 167475 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.08;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1636,180,0 chrVIII 167487 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.03;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1375,156,0 chrVIII 167568 . T G 561 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=16.50;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:69:594,69,0 chrVIII 167569 . C G 589 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=17.32;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,32:34:69:622,69,0 chrVIII 167570 . C A 579 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=17.55;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:69:612,69,0 chrVIII 167593 . T C 310 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=14.76;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:39:343,39,0 chrVIII 167656 . T C 151.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-1.281;QD=6.57;ReadPosRankSum=1.583;SB=-4.907e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:21:184,21,0 chrVIII 167785 . T C 1587 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=26.02;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1620,180,0 chrVIII 168208 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.48;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2429,267,0 chrVIII 168229 . A G 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=106;Dels=0.00;FS=7.116;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-2.334;QD=19.17;ReadPosRankSum=2.357;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2065,240,0 chrVIII 168439 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.96;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2443,276,0 chrVIII 168444 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.15;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,108:113:99:2310,258,0 chrVIII 168719 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.09;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1430,162,0 chrVIII 168804 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.84;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1362,153,0 chrVIII 168879 . A G 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=4.607;HaplotypeScore=12.2009;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.366;QD=22.25;ReadPosRankSum=1.666;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2347,273,0 chrVIII 169868 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.4030;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.52;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4153,477,0 chrVIII 170402 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.70;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1554,177,0 chrVIII 170595 . C T 464 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=13.65;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:54:497,54,0 chrVIII 170680 . T C 872 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=11.0118;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.82;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:905,105,0 chrVIII 170703 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.07;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1325,147,0 chrVIII 170740 . C G 999 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.26;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1032,117,0 chrVIII 170843 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.83;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2613,294,0 chrVIII 171000 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.67;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3385,384,0 chrVIII 171171 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.5233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3828,444,0 chrVIII 171279 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3698,423,0 chrVIII 171347 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.81;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3433,378,0 chrVIII 172563 . C G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0870;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3453,393,0 chrVIII 172608 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2973,342,0 chrVIII 172687 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.51;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3743,423,0 chrVIII 172837 . C G 4027.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.50;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4027,453,0 chrVIII 173130 . A T 33.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.495;DP=33;Dels=0.00;FS=3.724;HaplotypeScore=40.7343;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.856;QD=1.03;ReadPosRankSum=-2.787;SB=2.03 GT:AD:DP:GQ:PL 1/1:14,19:33:9:66,9,0 chrVIII 173197 . T C 590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.449;QD=10.93;ReadPosRankSum=1.604;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:75:623,75,0 chrVIII 173207 . A G 963 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.32;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:996,117,0 chrVIII 173271 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2426;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.84;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,83:88:99:1603,183,0 chrVIII 173295 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.89;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2397,258,0 chrVIII 173412 . G A 5935.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.2313;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.32;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5935,645,0 chrVIII 173805 . T C 5863.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.86;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:5863,672,0 chrVIII 174093 . T C 8797.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=412;Dels=0.00;FS=10.542;HaplotypeScore=18.7529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.608;QD=21.35;ReadPosRankSum=2.910;SB=-4.431e+03 GT:AD:DP:GQ:PL 1/1:3,409:412:99:8797,1037,0 chrVIII 174717 . A G 6913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=339;Dels=0.00;FS=3.512;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.037;QD=20.39;ReadPosRankSum=1.650;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:1,338:339:99:6913,806,0 chrVIII 175012 . C T 7092.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=21.9736;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.96;SB=-3.312e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:7092,780,0 chrVIII 175141 . T C 6278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=327;Dels=0.00;FS=9.228;HaplotypeScore=19.8527;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.267;QD=19.20;ReadPosRankSum=2.427;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:2,324:327:99:6278,732,0 chrVIII 175197 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.1278;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.98;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4423,501,0 chrVIII 175253 . T A 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=4.493;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.271;QD=21.39;ReadPosRankSum=1.711;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3551,396,0 chrVIII 175365 . T C 2917 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=25.4350;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.71;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2950,333,0 chrVIII 175480 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.1594;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.71;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3270,372,0 chrVIII 176184 . G A 7025.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=25.7584;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.78;SB=-3.944e+03 GT:AD:DP:GQ:PL 1/1:0,337:338:99:7025,813,0 chrVIII 176351 . G A 5058.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=20.0102;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.60;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:5058,567,0 chrVIII 176426 . A G 5214.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.6934;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.53;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5214,603,0 chrVIII 176679 . T C 2167 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.36;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2200,258,0 chrVIII 177049 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.62;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2027,228,0 chrVIII 177112 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.52;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1531,171,0 chrVIII 177113 . C T 1486 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.36;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1519,171,0 chrVIII 177369 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.846;QD=21.63;ReadPosRankSum=1.666;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4564,525,0 chrVIII 177778 . G C 5458.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.3847;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.07;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5458,650,0 chrVIII 177867 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.077;DP=165;Dels=0.00;FS=2.798;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.052;QD=19.82;ReadPosRankSum=2.360;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3271,372,0 chrVIII 178041 . G T 2164 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.85;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2197,243,0 chrVIII 178061 . C G 2055 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.03;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,108:114:99:2088,237,0 chrVIII 178104 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.95;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2023,222,0 chrVIII 178314 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.57;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2787,306,0 chrVIII 178619 . G A 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.702;QD=20.95;ReadPosRankSum=-0.858;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2358,261,0 chrVIII 178632 . A G 2044 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.44;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2077,243,0 chrVIII 178799 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.9745;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.838;QD=23.42;ReadPosRankSum=2.406;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2680,312,0 chrVIII 178843 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.95;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2927,324,0 chrVIII 178909 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.10;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2950,327,0 chrVIII 179026 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.2695;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.18;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2695,297,0 chrVIII 179142 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2615,303,0 chrVIII 179241 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.93;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2950,330,0 chrVIII 179259 . A G 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=139;Dels=0.00;FS=6.774;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.911;QD=20.09;ReadPosRankSum=2.344;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2826,324,0 chrVIII 179265 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.82;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2669,294,0 chrVIII 179402 . A G 2803 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.56;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2836,330,0 chrVIII 179444 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.6345;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.569;QD=22.37;ReadPosRankSum=1.629;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3076,328,0 chrVIII 179572 . T C 3151 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.51;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3184,366,0 chrVIII 179607 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.94;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3105,354,0 chrVIII 179748 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3473,381,0 chrVIII 179871 . T A 3064 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.70;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3097,354,0 chrVIII 180390 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.99;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4424,498,0 chrVIII 180749 . G A 5604.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=20.3827;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.95;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5604,615,0 chrVIII 180818 . C T 5989.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.3984;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.95;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:5989,669,0 chrVIII 180918 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=204;Dels=0.00;FS=2.381;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=2.271;QD=17.78;ReadPosRankSum=3.417;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:3627,429,0 chrVIII 181049 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.6090;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.16;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4147,459,0 chrVIII 181082 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.37;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4012,477,0 chrVIII 181132 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.120;DP=161;Dels=0.00;FS=15.892;HaplotypeScore=13.1596;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.284;QD=21.68;ReadPosRankSum=3.208;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:4,156:161:99:3491,396,0 chrVIII 181682 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.47;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4269,503,0 chrVIII 181744 . A G 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=135;Dels=0.00;FS=2.894;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.464;QD=19.30;ReadPosRankSum=2.413;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2639,309,0 chrVIII 182078 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=24.21;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2454,267,0 chrVIII 182092 . T C 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.243;QD=23.01;ReadPosRankSum=1.700;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2495,282,0 chrVIII 182246 . A C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=3.792;HaplotypeScore=11.0092;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.489;QD=20.37;ReadPosRankSum=1.651;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3503,405,0 chrVIII 182297 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=161;Dels=0.00;FS=6.784;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.023;QD=19.98;ReadPosRankSum=2.389;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3249,369,0 chrVIII 182330 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=158;Dels=0.00;FS=5.526;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=-1.758;QD=17.06;ReadPosRankSum=2.943;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:2729,312,0 chrVIII 182333 . A T 2767 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.40;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2800,309,0 chrVIII 182354 . A G 2731 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=16.65;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2764,327,0 chrVIII 183701 . A G 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.617;QD=22.64;ReadPosRankSum=1.694;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2071,234,0 chrVIII 183721 . T C 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=5.119;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.618;QD=21.91;ReadPosRankSum=1.694;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2049,237,0 chrVIII 183923 . T C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=11.6208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.082;QD=21.51;ReadPosRankSum=1.650;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1861,216,0 chrVIII 183973 . A T 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=82;Dels=0.00;FS=9.863;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.790;QD=20.82;ReadPosRankSum=2.914;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1740,192,0 chrVIII 184105 . A G 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.704;QD=20.44;ReadPosRankSum=1.618;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1893,222,0 chrVIII 184258 . A G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=96;Dels=0.00;FS=10.192;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.543;QD=21.97;ReadPosRankSum=2.926;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:3,92:96:99:2142,246,0 chrVIII 184281 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.43;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2176,240,0 chrVIII 184323 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.10;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1890,219,0 chrVIII 185064 . G A 5051.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.8176;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.06;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:5051,579,0 chrVIII 185364 . C A 4285.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.75;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4285,483,0 chrVIII 185403 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.6688;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.90;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3569,396,0 chrVIII 185463 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.75;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3341,378,0 chrVIII 185493 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.39;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3255,369,0 chrVIII 185592 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.85;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3365,387,0 chrVIII 185625 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.16;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3280,384,0 chrVIII 186453 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.86;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2870,336,0 chrVIII 186876 . C T 972 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1005,111,0 chrVIII 187527 . T A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.46;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3660,402,0 chrVIII 187989 . G A 4328.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4328,504,0 chrVIII 188673 . C A 4911.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.7470;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.74;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4911,552,0 chrVIII 188788 . A G 5621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=234;Dels=0.00;FS=4.790;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.299;QD=24.02;ReadPosRankSum=1.717;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5621,636,0 chrVIII 188853 . G A 5606.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.2540;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.81;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:5606,618,0 chrVIII 188873 . T C 5490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=247;Dels=0.00;FS=2.859;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.601;QD=22.23;ReadPosRankSum=2.430;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5490,621,0 chrVIII 189026 . C T 4222.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.2272;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.68;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,221:226:99:4222,468,0 chrVIII 189040 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.8539;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.03;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:3858,429,0 chrVIII 189054 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=202;Dels=0.00;FS=8.527;HaplotypeScore=7.6858;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.286;QD=18.34;ReadPosRankSum=2.425;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:3704,426,0 chrVIII 189143 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.9800;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.64;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3535,402,0 chrVIII 189221 . C G 4110.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.45;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4110,468,0 chrVIII 189274 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.1131;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.44;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3150,357,0 chrVIII 189310 . G A 4369.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.8244;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.04;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4369,483,0 chrVIII 189521 . A T 6024.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.06;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6024,672,0 chrVIII 190024 . C T 5397.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.3832;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.12;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5397,600,0 chrVIII 190339 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=16.08;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:3393,375,0 chrVIII 190671 . C T 5019.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.82;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5019,570,0 chrVIII 191072 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.393;QD=21.76;ReadPosRankSum=2.230;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:4025,459,0 chrVIII 191248 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=237;Dels=0.00;FS=8.060;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.196;QD=21.30;ReadPosRankSum=2.418;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5047,596,0 chrVIII 191304 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.1538;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.80;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4118,462,0 chrVIII 191691 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3728,423,0 chrVIII 192435 . A G 5029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=3.546;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.495;QD=22.45;ReadPosRankSum=1.717;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5029,593,0 chrVIII 192776 . A T 2726 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2904;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=18.54;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2759,312,0 chrVIII 192892 . C T 1296 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=31;QD=13.09;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1329,153,0 chrVIII 192973 . G A 2597 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5930;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=9;QD=16.65;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2630,306,0 chrVIII 193003 . A G 2113 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=14;QD=13.21;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2146,249,0 chrVIII 193006 . G T 1962 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=14;QD=12.82;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1995,231,0 chrVIII 193069 . T C 692 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=17.63;MQ0=36;MQRankSum=-0.204;QD=4.91;ReadPosRankSum=1.698;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,137:141:84:725,84,0 chrVIII 193075 . G A 697 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.29;MQ0=38;QD=5.20;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:81:730,81,0 chrVIII 193114 . T C 1195 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=19.44;MQ0=35;QD=9.05;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1228,141,0 chrVIII 193183 . T G 1510 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=20;QD=15.41;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1543,174,0 chrVIII 193417 . G A 1723 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=21.54;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1756,204,0 chrVIII 193426 . A G 915 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=18.30;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:948,111,0 chrVIII 193427 . A G 907 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=11.114;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;MQRankSum=-1.844;QD=18.51;ReadPosRankSum=2.147;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:940,105,0 chrVIII 193428 . C A 934 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=21.23;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:967,105,0 chrVIII 193438 . C A 290 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=16.11;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:42:323,42,0 chrVIII 193489 . G A 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=2.60;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrVIII 193492 . G C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.18;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:53,6,0 chrVIII 193495 . A T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.08;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:52,6,0 chrVIII 193498 . A G 29.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.98;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:61,6,0 chrVIII 193501 . C A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.28;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:54,6,0 chrVIII 193522 . A T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=1.98;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:51,6,0 chrVIII 193528 . T A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.18;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:53,6,0 chrVIII 193529 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=1.98;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:51,6,0 chrVIII 193539 . G C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.08;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:52,6,0 chrVIII 193542 . G C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.18;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:53,6,0 chrVIII 194167 . T A 199.01 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.27;MQ0=34;QD=4.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:27:232,27,0 chrVIII 194191 . G A 227 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.21;MQ0=22;QD=7.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:30:260,30,0 chrVIII 194221 . G T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.17;MQ0=12;QD=1.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:6:54,6,0 chrVIII 194236 . G A 255 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=7;QD=12.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:33:288,33,0 chrVIII 194269 . G T 475 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=20;QD=11.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:57:508,57,0 chrVIII 194332 . T C 335 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.94;MQ0=46;QD=5.23;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:42:368,42,0 chrVIII 194446 . T G 291 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.84;MQ0=22;QD=6.47;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:36:324,36,0 chrVIII 194646 . A T 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.39;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:107,12,0 chrVIII 194647 . A C 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.57;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:111,12,0 chrVIII 194649 . C T 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=3.10;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:107,12,0 chrVIII 194650 . C T 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=3.14;SB=-2.852e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:12:111,12,0 chrVIII 194658 . T A 106.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;MQRankSum=-1.732;QD=1.83;ReadPosRankSum=1.673;SB=-5.727e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:15:139,15,0 chrVIII 194671 . A G 261 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=3.53;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:33:294,33,0 chrVIII 194812 . C G 3131 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;QD=22.21;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3164,357,0 chrVIII 194830 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=37.34;MQ0=0;QD=22.60;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3616,405,0 chrVIII 195005 . A G 2261 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.85;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2294,264,0 chrVIII 195121 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.02;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2266,261,0 chrVIII 195157 . C A 2824 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=24.77;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2857,315,0 chrVIII 195161 . T G 2735 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=23.18;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2768,312,0 chrVIII 195175 . C G 2599 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.96;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2632,303,0 chrVIII 195216 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.33;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2295,261,0 chrVIII 195219 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.32;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2177,249,0 chrVIII 195244 . A G 2084 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.44;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2117,246,0 chrVIII 195507 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.153;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.816;QD=23.24;ReadPosRankSum=1.643;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3602,414,0 chrVIII 195733 . T C 1908 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.87;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1941,219,0 chrVIII 195739 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.51;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2055,231,0 chrVIII 195823 . T C 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=4.001;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.858;QD=19.83;ReadPosRankSum=1.698;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2095,246,0 chrVIII 195826 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.13;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2106,240,0 chrVIII 195949 . C T 2465 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.82;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2498,279,0 chrVIII 196156 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=167;Dels=0.00;FS=6.205;HaplotypeScore=4.2104;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=1.067;QD=19.75;ReadPosRankSum=2.420;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3298,378,0 chrVIII 196160 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.02;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3363,378,0 chrVIII 196180 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.90;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3781,420,0 chrVIII 196246 . C T 4752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.297;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.023;QD=21.70;ReadPosRankSum=0.685;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,214:219:99:4752,543,0 chrVIII 196300 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=190;Dels=0.00;FS=2.579;HaplotypeScore=15.8571;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.780;QD=21.24;ReadPosRankSum=2.920;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:3,184:190:99:4035,459,0 chrVIII 196402 . A C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.708;QD=23.38;ReadPosRankSum=1.708;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3414,393,0 chrVIII 196468 . A G 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.322;DP=145;Dels=0.00;FS=17.752;HaplotypeScore=4.9808;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=1.056;QD=19.30;ReadPosRankSum=4.386;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:7,138:145:99:2831,327,0 chrVIII 196529 . C T 2361 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=18.16;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2394,264,0 chrVIII 196530 . C T 2414 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=0.278;QD=18.43;ReadPosRankSum=1.521;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2447,267,0 chrVIII 196532 . A G 2341 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.034;DP=130;Dels=0.00;FS=3.044;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-0.416;QD=18.01;ReadPosRankSum=1.652;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2374,270,0 chrVIII 196537 . G A 2582 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=18.71;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2615,291,0 chrVIII 196732 . T C 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=115;Dels=0.00;FS=12.978;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-0.469;QD=16.62;ReadPosRankSum=2.919;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:3,109:115:99:1944,231,0 chrVIII 196831 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2584,297,0 chrVIII 196867 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=121;Dels=0.00;FS=10.471;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.817;QD=22.17;ReadPosRankSum=2.408;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2715,306,0 chrVIII 197020 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.39;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3322,384,0 chrVIII 197237 . T C 803 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.84;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:96:836,96,0 chrVIII 197728 . T A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=20.96;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3605,399,0 chrVIII 198043 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2590,294,0 chrVIII 198244 . T A 2538 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.64;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2571,276,0 chrVIII 198762 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.47;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2194,249,0 chrVIII 199794 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=174;Dels=0.00;FS=3.015;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.614;QD=22.46;ReadPosRankSum=2.421;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3908,441,0 chrVIII 199940 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3635,399,0 chrVIII 200213 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.205;QD=22.40;ReadPosRankSum=1.682;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3147,363,0 chrVIII 200350 . A G 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=3.293;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.254;QD=21.24;ReadPosRankSum=1.708;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3070,348,0 chrVIII 200357 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2443;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.71;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3057,348,0 chrVIII 200453 . C T 3019 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3052,339,0 chrVIII 200500 . G A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.91;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4060,453,0 chrVIII 200720 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3422,387,0 chrVIII 200796 . T G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=181;Dels=0.00;FS=14.076;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.623;QD=21.04;ReadPosRankSum=3.410;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:4,174:181:99:3808,435,0 chrVIII 200813 . G A 4037.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.0242;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.59;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4037,459,0 chrVIII 200955 . A G 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.6601;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.367;QD=20.72;ReadPosRankSum=1.654;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2810,318,0 chrVIII 201705 . C T 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.136;DP=104;Dels=0.00;FS=5.222;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.090;QD=17.05;ReadPosRankSum=2.747;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:4,100:104:99:1806,201,0 chrVIII 201706 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=103;Dels=0.03;FS=0.000;HaplotypeScore=6.3351;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.465;QD=16.01;ReadPosRankSum=2.123;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,96:100:99:1682,192,0 chrVIII 201811 . A G 1869 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.15;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1902,219,0 chrVIII 201817 . G A 1999 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.79;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2032,225,0 chrVIII 201877 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=11.3198;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.98;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1900,210,0 chrVIII 201915 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=116;Dels=0.00;FS=5.291;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.319;QD=20.72;ReadPosRankSum=2.939;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,111:116:99:2436,276,0 chrVIII 202053 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7386;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.15;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3204,369,0 chrVIII 202143 . T G 2616 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.82;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2649,306,0 chrVIII 202307 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.11;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3420,378,0 chrVIII 202480 . T C 2909 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.9947;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.52;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2942,348,0 chrVIII 202550 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.4544;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.39;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3033,330,0 chrVIII 202635 . T C 3074 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.83;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3107,354,0 chrVIII 202737 . A C 2861 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.26;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2894,336,0 chrVIII 202757 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.58;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3146,345,0 chrVIII 202824 . A T 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.601;QD=21.67;ReadPosRankSum=1.709;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3218,357,0 chrVIII 202861 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.16;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3135,348,0 chrVIII 202988 . T C 3057 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.48;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:3090,348,0 chrVIII 203255 . T G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=2.692;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.271;QD=22.12;ReadPosRankSum=2.420;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3739,429,0 chrVIII 203274 . C A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.65;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3669,402,0 chrVIII 203292 . T C 3065 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.03;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3098,351,0 chrVIII 203310 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.01;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3075,339,0 chrVIII 203446 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.65;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4100,468,0 chrVIII 203456 . C G 3646.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.08;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3646,411,0 chrVIII 203498 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=141;Dels=0.00;FS=2.650;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.218;QD=20.54;ReadPosRankSum=2.415;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2929,339,0 chrVIII 203533 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.24;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2752,303,0 chrVIII 203641 . A G 2283 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=12.0043;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.20;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2316,276,0 chrVIII 203815 . T A 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.134;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.469;QD=23.95;ReadPosRankSum=1.635;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2596,285,0 chrVIII 203883 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.40;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1788,195,0 chrVIII 203922 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.30;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1460,162,0 chrVIII 204071 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.547;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.013;QD=22.09;ReadPosRankSum=1.705;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2883,324,0 chrVIII 204086 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.56;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2577,282,0 chrVIII 204117 . A T 2285 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.40;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2318,258,0 chrVIII 204203 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.000;QD=24.30;ReadPosRankSum=1.709;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3596,414,0 chrVIII 204657 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.39;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4209,489,0 chrVIII 204711 . G T 4917.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.1600;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.56;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4917,549,0 chrVIII 204738 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.93;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3806,420,0 chrVIII 204740 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.10;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3859,420,0 chrVIII 204882 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.29;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4398,489,0 chrVIII 205191 . A C 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=20.5156;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.052;QD=21.64;ReadPosRankSum=0.563;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3916,456,0 chrVIII 205278 . A T 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=181;Dels=0.00;FS=9.177;HaplotypeScore=13.3894;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.106;QD=21.56;ReadPosRankSum=2.906;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3902,441,0 chrVIII 205596 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.48;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2639,312,0 chrVIII 205723 . A C 2297 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2330,273,0 chrVIII 205941 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.86;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3825,450,0 chrVIII 206031 . A C 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=9.182;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.032;QD=22.78;ReadPosRankSum=2.398;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4329,501,0 chrVIII 206103 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3417,393,0 chrVIII 206439 . C A 1575 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.94;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1608,183,0 chrVIII 206460 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.64;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1356,150,0 chrVIII 206836 . G C 4370.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4370,504,0 chrVIII 207052 . T A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4692,531,0 chrVIII 207624 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.67;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2610,297,0 chrVIII 207642 . C G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.37;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3321,378,0 chrVIII 207745 . C T 2700 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.60;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2733,303,0 chrVIII 208403 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.56;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3762,429,0 chrVIII 208406 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.0113;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.504;QD=21.56;ReadPosRankSum=0.020;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3730,414,0 chrVIII 208566 . C T 5129.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.1119;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.50;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5129,567,0 chrVIII 208748 . A G 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=250;Dels=0.00;FS=6.038;HaplotypeScore=20.4045;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.440;QD=20.42;ReadPosRankSum=2.649;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:3,246:250:99:5105,586,0 chrVIII 208790 . C T 5138.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=16.6509;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.32;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5138,576,0 chrVIII 208959 . G C 4569.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.86;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,203:209:99:4569,528,0 chrVIII 209079 . C T 3927.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.78;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3927,432,0 chrVIII 209085 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.62;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3708,405,0 chrVIII 209095 . C A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.25;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3245,357,0 chrVIII 209243 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.16;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3302,363,0 chrVIII 209639 . G A 2545 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.5380;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.39;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2578,288,0 chrVIII 209742 . A G 2691 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.61;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2724,306,0 chrVIII 210057 . A C 2718 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.65;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2751,315,0 chrVIII 210588 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=5.7484;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=2.08;SB=-5.151e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:52,6,0 chrVIII 210641 . G A 706 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.06;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:84:739,84,0 chrVIII 210710 . A T 648 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:75:681,75,0 chrVIII 211004 . G C 1106 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=12.43;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1139,129,0 chrVIII 211042 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.87;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1143,129,0 chrVIII 211315 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2778,309,0 chrVIII 211462 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=168;Dels=0.00;FS=2.997;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.046;QD=22.87;ReadPosRankSum=2.420;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3842,438,0 chrVIII 211534 . T A 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.619;QD=20.36;ReadPosRankSum=1.709;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3148,363,0 chrVIII 211639 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.8543;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.88;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4233,483,0 chrVIII 211701 . G A 4386.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4386,486,0 chrVIII 212243 . C G 1364 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=23.93;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1397,156,0 chrVIII 212293 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=2;QD=21.86;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1301,144,0 chrVIII 212509 . G A 159.06 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.22;MQ0=32;QD=3.98;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,39:40:21:192,21,0 chrVIII 212536 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.26;MQ0=52;QD=0.39;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,56:56:6:53,6,0 chrVIII 216123 . C T 1498 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=30;QD=16.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1531,168,0 chrVIII 216235 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=2;QD=22.78;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2949,339,0 chrVIII 216338 . C G 3223.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=23.70;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3256,369,0 chrVIII 216600 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.9782;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3863,423,0 chrVIII 216707 . T C 2893 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1222;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2926,336,0 chrVIII 216814 . T C 3079 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.99;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3112,363,0 chrVIII 217091 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.62;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2519,285,0 chrVIII 217536 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=208;Dels=0.00;FS=3.011;HaplotypeScore=14.3732;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.675;QD=19.45;ReadPosRankSum=2.402;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:2,204:208:99:4045,459,0 chrVIII 218189 . T C 4894.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.25;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4894,573,0 chrVIII 218688 . G C 4341.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.38;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4341,498,0 chrVIII 218765 . T C 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.827;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.015;QD=19.84;ReadPosRankSum=1.683;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2831,321,0 chrVIII 218977 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=160;Dels=0.00;FS=5.419;HaplotypeScore=22.2229;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.481;QD=20.69;ReadPosRankSum=2.955;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:3,154:160:99:3310,387,0 chrVIII 219038 . A G 5745.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=19.9312;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=23.94;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5745,657,0 chrVIII 219267 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=17.6482;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=15.93;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:3727,420,0 chrVIII 219282 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.4150;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.21;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4169,459,0 chrVIII 219407 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.2820;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.386;QD=21.02;ReadPosRankSum=1.712;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3615,420,0 chrVIII 219461 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.43;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3266,360,0 chrVIII 219876 . C T 2496 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=19.20;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2529,291,0 chrVIII 219879 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=19.83;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2611,291,0 chrVIII 219926 . T C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.944;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.514;QD=19.11;ReadPosRankSum=1.705;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2517,285,0 chrVIII 219934 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=5.367;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.577;QD=19.35;ReadPosRankSum=1.703;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2297,258,0 chrVIII 220076 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=145;Dels=0.00;FS=4.424;HaplotypeScore=10.6018;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.241;QD=24.15;ReadPosRankSum=1.708;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3502,396,0 chrVIII 220140 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1101;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.143;QD=19.68;ReadPosRankSum=2.335;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2592,297,0 chrVIII 220151 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.33;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2397,267,0 chrVIII 220155 . T C 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-1.474;QD=18.39;ReadPosRankSum=1.675;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2258,264,0 chrVIII 220206 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=17.61;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2393,276,0 chrVIII 220708 . G C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.71;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3702,429,0 chrVIII 220848 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.477;HaplotypeScore=10.3861;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.608;QD=23.50;ReadPosRankSum=1.691;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3924,453,0 chrVIII 221114 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.44;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2456,273,0 chrVIII 221854 . T C 4499.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4499,516,0 chrVIII 221939 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.09;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3459,387,0 chrVIII 222016 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.23;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3168,363,0 chrVIII 222206 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=15.2187;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.01;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2314,264,0 chrVIII 222260 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.866;QD=22.85;ReadPosRankSum=1.662;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3404,381,0 chrVIII 222295 . T C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.671;QD=22.38;ReadPosRankSum=1.691;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3804,441,0 chrVIII 222996 . T C 5908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.387;QD=21.80;ReadPosRankSum=1.706;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:5908,689,0 chrVIII 223791 . T C 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.699;QD=21.25;ReadPosRankSum=1.237;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2264,255,0 chrVIII 223885 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3470,408,0 chrVIII 224177 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=4.063;HaplotypeScore=8.5514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.855;QD=23.36;ReadPosRankSum=1.688;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3691,429,0 chrVIII 224477 . C G 2730 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8149;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.36;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,135:141:99:2763,315,0 chrVIII 224759 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.59;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1989,225,0 chrVIII 224795 . T C 2110 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2143,246,0 chrVIII 225149 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2923;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;MQRankSum=-0.054;QD=19.57;ReadPosRankSum=1.696;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1931,225,0 chrVIII 225173 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;QD=18.32;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1792,198,0 chrVIII 225175 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=17.83;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1798,204,0 chrVIII 225210 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=17.28;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2020,219,0 chrVIII 225220 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=17.06;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2046,228,0 chrVIII 225407 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=2.906;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.223;QD=23.01;ReadPosRankSum=2.381;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1690,195,0 chrVIII 225441 . T A 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.929;QD=20.88;ReadPosRankSum=1.605;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1745,192,0 chrVIII 225748 . A G 3682.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.59;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3682,423,0 chrVIII 225911 . G C 4288.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4288,486,0 chrVIII 226158 . C T 5066.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.35;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5066,576,0 chrVIII 226482 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.9035;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.89;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5101,582,0 chrVIII 226755 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.34;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3063,342,0 chrVIII 227216 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=19.40;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2575,300,0 chrVIII 227218 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=20.37;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2722,300,0 chrVIII 227227 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.966;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=-0.099;QD=19.89;ReadPosRankSum=2.359;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2738,312,0 chrVIII 227323 . T G 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.225;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-1.436;QD=17.90;ReadPosRankSum=1.690;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1501,174,0 chrVIII 227343 . T C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=84;Dels=0.00;FS=7.219;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.165;QD=19.10;ReadPosRankSum=2.390;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,80:84:99:1637,183,0 chrVIII 227411 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5662;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=21.05;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2369,267,0 chrVIII 227429 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=99;Dels=0.00;FS=6.045;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;MQRankSum=-1.010;QD=19.73;ReadPosRankSum=2.929;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1986,231,0 chrVIII 227444 . T C 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=-0.197;QD=17.52;ReadPosRankSum=1.693;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1575,189,0 chrVIII 227519 . A G 1877 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.58;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1910,228,0 chrVIII 227530 . G A 2106 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=17.55;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2139,234,0 chrVIII 227532 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=17.55;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2156,240,0 chrVIII 227951 . A C 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=125;Dels=0.00;FS=5.404;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.626;QD=18.07;ReadPosRankSum=2.797;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2292,264,0 chrVIII 227964 . G A 2811 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.4705;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.66;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2844,312,0 chrVIII 228006 . G C 3022 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.50;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3055,354,0 chrVIII 228015 . A G 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.208;QD=19.54;ReadPosRankSum=1.709;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2964,336,0 chrVIII 228402 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.88;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4132,453,0 chrVIII 228507 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.22;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4365,483,0 chrVIII 228696 . G C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.52;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3378,402,0 chrVIII 228792 . G T 2559 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.98;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2592,288,0 chrVIII 228831 . G C 2214 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=17.71;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2247,264,0 chrVIII 228862 . A G 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.247;QD=16.01;ReadPosRankSum=1.701;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1826,213,0 chrVIII 228880 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=16.91;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1995,219,0 chrVIII 228881 . C T 1961 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=17.05;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1994,219,0 chrVIII 228903 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=15.92;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1784,201,0 chrVIII 229106 . T C 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=4.349;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.141;QD=22.24;ReadPosRankSum=1.661;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2257,258,0 chrVIII 229142 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.09;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1480,174,0 chrVIII 229184 . T A 1069 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=11.8219;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=16.45;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1102,123,0 chrVIII 229265 . G C 1270 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=16.49;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1303,153,0 chrVIII 229427 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;MQRankSum=0.448;QD=22.28;ReadPosRankSum=1.672;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2617,300,0 chrVIII 229448 . T C 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.912;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.217;QD=21.60;ReadPosRankSum=2.388;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2603,297,0 chrVIII 229583 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=149;Dels=0.00;FS=8.335;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;MQRankSum=-1.254;QD=20.90;ReadPosRankSum=2.400;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3147,357,0 chrVIII 229613 . T C 2496 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=17.83;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2529,294,0 chrVIII 229616 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=18.18;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2397,264,0 chrVIII 229640 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=18.58;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2300,255,0 chrVIII 230093 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.02;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3531,381,0 chrVIII 230165 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=22.8632;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.64;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2818,312,0 chrVIII 230196 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.6981;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.38;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3054,336,0 chrVIII 230282 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8991;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=1;QD=22.32;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3817,420,0 chrVIII 230390 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.610;DP=181;Dels=0.00;FS=4.016;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.764;QD=23.39;ReadPosRankSum=-0.822;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4233,472,0 chrVIII 230432 . T C 4976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.2916;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=1;MQRankSum=-0.524;QD=23.04;ReadPosRankSum=1.700;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4976,570,0 chrVIII 230585 . T C 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=212;Dels=0.00;FS=6.292;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.291;QD=22.94;ReadPosRankSum=2.415;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4864,555,0 chrVIII 230894 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.22;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3877,444,0 chrVIII 230913 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.19;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3572,396,0 chrVIII 231163 . C G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.63;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,169:175:99:3610,408,0 chrVIII 231170 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.42;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3328,378,0 chrVIII 231221 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.7239;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.19;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3814,423,0 chrVIII 231290 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=167;Dels=0.00;FS=4.593;HaplotypeScore=9.5282;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.840;QD=20.75;ReadPosRankSum=1.338;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3465,380,0 chrVIII 231411 . T G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.75;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3719,429,0 chrVIII 231446 . A C 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.597;DP=160;Dels=0.00;FS=11.932;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.308;QD=19.99;ReadPosRankSum=3.785;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:5,154:160:99:3231,384,0 chrVIII 231830 . T C 2201 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.01;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2234,255,0 chrVIII 232078 . C A 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.1668;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.355;QD=24.06;ReadPosRankSum=0.178;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3801,414,0 chrVIII 232174 . C T 4820.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=17.4432;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.10;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4820,531,0 chrVIII 232258 . T C 5896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=17.5517;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.137;QD=22.00;ReadPosRankSum=1.706;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:5896,681,0 chrVIII 232321 . T C 6979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.121;DP=305;Dels=0.00;FS=10.690;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.596;QD=22.88;ReadPosRankSum=4.112;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:6,299:305:99:6979,807,0 chrVIII 232501 . G T 7174.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=11.0129;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.70;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:7174,789,0 chrVIII 232747 . C T 5047.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.8488;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.84;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5047,567,0 chrVIII 233140 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.72;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3866,456,0 chrVIII 233357 . A C 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.024;QD=16.67;ReadPosRankSum=2.260;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:900,105,0 chrVIII 233361 . G A 846 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=16.59;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:879,99,0 chrVIII 233475 . T A 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.231;QD=23.60;ReadPosRankSum=2.378;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2464,273,0 chrVIII 233495 . C A 1984 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.64;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2017,222,0 chrVIII 233526 . T C 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-0.776;QD=13.63;ReadPosRankSum=1.672;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1614,189,0 chrVIII 233542 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=11.74;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1500,165,0 chrVIII 233556 . A C 1288 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=9.68;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1321,150,0 chrVIII 233563 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=8.95;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:1331,150,0 chrVIII 233575 . C T 1839 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=10.45;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,176:176:99:1872,207,0 chrVIII 233885 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=208;Dels=0.00;FS=6.518;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.418;QD=23.40;ReadPosRankSum=2.378;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4868,549,0 chrVIII 234682 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.67;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3009,339,0 chrVIII 234858 . A C 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=78;Dels=0.00;FS=4.337;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.501;QD=21.35;ReadPosRankSum=1.687;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1698,195,0 chrVIII 234994 . T C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.064;DP=129;Dels=0.00;FS=8.883;HaplotypeScore=15.3115;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.944;QD=21.22;ReadPosRankSum=3.363;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2771,318,0 chrVIII 235081 . A G 3014 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.0075;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.32;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3047,348,0 chrVIII 235096 . G A 2917 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.32;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2950,324,0 chrVIII 235097 . G A 2865 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=18.97;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2898,321,0 chrVIII 235099 . G T 2823 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.21;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2856,315,0 chrVIII 235912 . A G 5324.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.94;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5324,632,0 chrVIII 235973 . T G 5391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=284;Dels=0.00;FS=2.870;HaplotypeScore=16.1954;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.505;QD=18.98;ReadPosRankSum=2.415;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:2,282:284:99:5391,635,0 chrVIII 236137 . T C 8984.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=422;Dels=0.00;FS=5.728;HaplotypeScore=36.5563;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.175;QD=21.29;ReadPosRankSum=2.916;SB=-4.383e+03 GT:AD:DP:GQ:PL 1/1:3,416:422:99:8984,1038,0 chrVIII 236191 . G A 9864.01 filter AC=2;AF=1.00;AN=2;DP=419;Dels=0.00;FS=0.000;HaplotypeScore=19.0990;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.54;SB=-4.130e+03 GT:AD:DP:GQ:PL 1/1:0,419:419:99:9864,1090,0 chrVIII 236227 . G A 7188.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=14.5875;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.14;SB=-3.980e+03 GT:AD:DP:GQ:PL 1/1:0,338:340:99:7188,789,0 chrVIII 236251 . T C 5778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=309;Dels=0.00;FS=6.326;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.488;QD=18.70;ReadPosRankSum=2.353;SB=-3.581e+03 GT:AD:DP:GQ:PL 1/1:2,302:309:99:5778,663,0 chrVIII 237146 . G A 1180 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1213,132,0 chrVIII 237318 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=119;Dels=0.00;FS=2.562;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.144;QD=20.73;ReadPosRankSum=2.924;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2500,282,0 chrVIII 237328 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.41;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2752,312,0 chrVIII 237556 . T C 2468 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=22.04;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2501,282,0 chrVIII 237633 . A G 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.379;QD=20.64;ReadPosRankSum=1.697;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2056,237,0 chrVIII 237696 . T G 1300 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.67;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1333,156,0 chrVIII 237758 . T C 505 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=10.74;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:538,63,0 chrVIII 237787 . C G 486 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=12.15;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:60:519,60,0 chrVIII 237803 . T C 397 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=12.41;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:51:430,51,0 chrVIII 237813 . T A 403 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=16.4306;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=13.43;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:48:436,48,0 chrVIII 237837 . G T 326 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=18.11;SB=-7.544e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:39:359,39,0 chrVIII 237941 . T C 177.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=3;QD=9.84;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:1,16:18:24:210,24,0 chrVIII 237943 . C T 182.03 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=2;QD=11.38;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:24:215,24,0 chrVIII 238170 . T C 2454 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.93;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2487,279,0 chrVIII 238630 . T A 2721 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.49;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2754,312,0 chrVIII 238746 . C G 2110 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.51;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2143,246,0 chrVIII 238799 . G T 1399 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=19.43;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1432,156,0 chrVIII 238800 . G C 1255 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=17.68;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1288,153,0 chrVIII 238812 . A C 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=80;Dels=0.00;FS=2.619;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-1.618;QD=16.55;ReadPosRankSum=2.327;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1357,156,0 chrVIII 238946 . A C 871 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.2249;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.13;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:904,105,0 chrVIII 239033 . G T 2197 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=11.8166;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.54;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2230,249,0 chrVIII 239430 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3722,414,0 chrVIII 240144 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.93;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4288,489,0 chrVIII 240384 . G A 4949.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.6558;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.13;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4949,546,0 chrVIII 240468 . C T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.49;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4205,483,0 chrVIII 240738 . G T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.7358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4087,453,0 chrVIII 241470 . C A 1970 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2003,222,0 chrVIII 241575 . G T 2577 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.61;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2610,288,0 chrVIII 241592 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=125;Dels=0.00;FS=3.043;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.128;QD=21.91;ReadPosRankSum=2.410;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2772,321,0 chrVIII 242062 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=8.2693;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.97;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2067,228,0 chrVIII 242119 . T G 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.656;QD=22.79;ReadPosRankSum=1.698;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2380,276,0 chrVIII 242214 . C A 2246 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.02;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2279,258,0 chrVIII 242274 . T G 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=4.054;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.406;QD=20.79;ReadPosRankSum=1.703;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2466,279,0 chrVIII 242300 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.87;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2663,297,0 chrVIII 242526 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.448;QD=21.63;ReadPosRankSum=1.577;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2932,330,0 chrVIII 242816 . A C 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=15.5086;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.030;QD=20.10;ReadPosRankSum=1.687;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,231:235:99:4723,555,0 chrVIII 243316 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.7008;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.21;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3564,399,0 chrVIII 243772 . G A 6512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=20.0961;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.720;QD=22.07;ReadPosRankSum=0.954;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:1,293:295:99:6512,741,0 chrVIII 244111 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2445;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.20;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3689,408,0 chrVIII 244222 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.51;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3286,381,0 chrVIII 244248 . A C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=152;Dels=0.00;FS=4.052;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.109;QD=20.55;ReadPosRankSum=1.709;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3157,363,0 chrVIII 244339 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.6507;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.13;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3619,411,0 chrVIII 244579 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.8963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.47;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3966,435,0 chrVIII 244894 . T C 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=158;Dels=0.00;FS=10.054;HaplotypeScore=17.0501;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.785;QD=19.53;ReadPosRankSum=2.418;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3119,363,0 chrVIII 244918 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.11;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3314,381,0 chrVIII 245011 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=143;Dels=0.00;FS=8.501;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.339;QD=22.52;ReadPosRankSum=3.397;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:4,138:143:99:3254,381,0 chrVIII 245056 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3232,360,0 chrVIII 245608 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=81.1314;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=19.90;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2242,252,0 chrVIII 245703 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=17.17;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:1904,213,0 chrVIII 245718 . A T 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=6.218;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;MQRankSum=-1.703;QD=17.03;ReadPosRankSum=2.406;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1940,216,0 chrVIII 245722 . A T 1759 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=15.43;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1792,201,0 chrVIII 245732 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;QD=15.37;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1693,189,0 chrVIII 245742 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=13.99;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1670,195,0 chrVIII 245779 . A G 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=3.928;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.155;QD=16.75;ReadPosRankSum=1.677;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2144,249,0 chrVIII 245791 . T A 2206 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=17.37;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2239,249,0 chrVIII 245815 . A C 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.795;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-0.177;QD=17.57;ReadPosRankSum=1.705;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2282,267,0 chrVIII 245841 . A T 2150 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=16.29;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2183,246,0 chrVIII 245849 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=17.33;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2234,249,0 chrVIII 245924 . T G 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.422;QD=20.73;ReadPosRankSum=1.535;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2583,291,0 chrVIII 246309 . G A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.5888;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.76;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3664,399,0 chrVIII 246363 . T C 3194 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.88;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3227,369,0 chrVIII 246465 . A T 4899.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.33;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4899,540,0 chrVIII 246543 . A G 4118.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.80;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4118,474,0 chrVIII 246987 . T C 5554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=249;Dels=0.00;FS=11.576;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.480;QD=22.31;ReadPosRankSum=2.956;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:5554,650,0 chrVIII 247113 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=178;Dels=0.00;FS=6.345;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.145;QD=19.98;ReadPosRankSum=2.394;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3556,408,0 chrVIII 247269 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.7928;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.18;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4126,459,0 chrVIII 247398 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.07;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3841,438,0 chrVIII 247426 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.66;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3769,411,0 chrVIII 247503 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=26.6510;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.41;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,185:190:99:4067,456,0 chrVIII 247777 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.8819;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.72;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3736,423,0 chrVIII 247833 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=17.6825;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.17;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3569,390,0 chrVIII 248016 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.795;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.768;QD=21.01;ReadPosRankSum=1.702;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2470,282,0 chrVIII 248019 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.86;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2640,288,0 chrVIII 248233 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.83;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2199,249,0 chrVIII 248390 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=76.8224;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.37;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1826,201,0 chrVIII 248547 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.03;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1643,183,0 chrVIII 248565 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=7.782;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.337;QD=20.06;ReadPosRankSum=1.684;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1477,168,0 chrVIII 248571 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.36;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1466,162,0 chrVIII 248649 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.44;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2895,321,0 chrVIII 248808 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.10;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2881,321,0 chrVIII 249226 . T C 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=133;Dels=0.00;FS=3.352;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.787;QD=20.42;ReadPosRankSum=1.680;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2749,318,0 chrVIII 249416 . T A 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=151;Dels=0.00;FS=5.756;HaplotypeScore=9.9033;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.233;QD=23.53;ReadPosRankSum=2.914;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3553,381,0 chrVIII 249527 . A G 4678.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.1788;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.04;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4678,531,0 chrVIII 250465 . G C 2185 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.01;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2218,249,0 chrVIII 250494 . T C 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=101;Dels=0.00;FS=6.884;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.134;QD=19.49;ReadPosRankSum=2.377;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2001,231,0 chrVIII 250546 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.039;QD=21.78;ReadPosRankSum=1.705;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2886,336,0 chrVIII 250575 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.60;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2927,327,0 chrVIII 250577 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.105;QD=20.64;ReadPosRankSum=1.581;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2882,333,0 chrVIII 250612 . A C 2635 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.23;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2668,306,0 chrVIII 250683 . A G 2450 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.87;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2483,294,0 chrVIII 250856 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=23.43;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3126,351,0 chrVIII 250913 . A T 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.522;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-1.375;QD=21.13;ReadPosRankSum=1.650;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2696,300,0 chrVIII 250921 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.85;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2296,255,0 chrVIII 250924 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.09;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2114,246,0 chrVIII 250980 . A G 1899 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.92;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1932,231,0 chrVIII 251363 . G C 3625.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.10;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3625,408,0 chrVIII 251694 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.020;QD=22.36;ReadPosRankSum=1.712;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3957,462,0 chrVIII 252105 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=152;Dels=0.00;FS=2.901;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.382;QD=22.99;ReadPosRankSum=2.352;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3494,402,0 chrVIII 252303 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.81;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3309,360,0 chrVIII 252321 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.13;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3131,354,0 chrVIII 252362 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.0658;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.17;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1981,222,0 chrVIII 252416 . T C 1956 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.23;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1989,222,0 chrVIII 252779 . A G 6572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=302;Dels=0.00;FS=7.681;HaplotypeScore=16.6767;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.025;QD=21.76;ReadPosRankSum=1.720;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,298:302:99:6572,791,0 chrVIII 252932 . A G 2624 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-9.488;DP=468;Dels=0.00;FS=34.222;HaplotypeScore=1014.1856;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=7.721;QD=5.61;ReadPosRankSum=-11.484;SB=-4.600e+01 GT:AD:DP:GQ:PL 1/1:341,126:467:99:2657,320,0 chrVIII 252947 . G A 1067.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.038;DP=458;Dels=0.00;FS=68.513;HaplotypeScore=717.4977;MLEAC=1;MLEAF=0.500;MQ=51.39;MQ0=0;MQRankSum=5.271;QD=2.33;ReadPosRankSum=-11.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:394,57:458:99:1097,0,823 chrVIII 252950 . A C 516.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.283;DP=454;Dels=0.00;FS=71.791;HaplotypeScore=22.4166;MLEAC=1;MLEAF=0.500;MQ=51.25;MQ0=0;MQRankSum=4.670;QD=1.14;ReadPosRankSum=-9.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:410,37:454:99:546,0,1057 chrVIII 252964 . C A 6125.01 filter AC=2;AF=1.00;AN=2;DP=459;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=13.34;SB=-5.457e+03 GT:AD:DP:GQ:PL 1/1:0,457:459:99:6125,708,0 chrVIII 252968 . C G 5957.01 filter AC=2;AF=1.00;AN=2;DP=463;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=12.87;SB=-5.770e+03 GT:AD:DP:GQ:PL 1/1:0,463:463:99:5957,693,0 chrVIII 253019 . C T 5790.01 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=12.6254;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=15.00;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:0,384:386:99:5790,648,0 chrVIII 253492 . A C 2395 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.38;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2428,288,0 chrVIII 253745 . T A 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=116;Dels=0.00;FS=3.241;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.463;QD=22.18;ReadPosRankSum=1.702;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2606,300,0 chrVIII 253999 . T C 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.659;QD=21.14;ReadPosRankSum=1.701;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2422,279,0 chrVIII 254158 . A T 2871 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.97;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2904,321,0 chrVIII 254195 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.57;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2696,306,0 chrVIII 254246 . A C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=129;Dels=0.00;FS=4.445;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.353;QD=21.20;ReadPosRankSum=1.651;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2768,318,0 chrVIII 254330 . T C 2492 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.48;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2525,291,0 chrVIII 254380 . C A 2789 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2822,318,0 chrVIII 254647 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1902;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.93;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2511,276,0 chrVIII 254816 . A G 2852 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.46;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2885,342,0 chrVIII 255648 . A G 2580 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.24;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2613,306,0 chrVIII 255828 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.11;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1890,213,0 chrVIII 255923 . G A 333 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=4.16;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:42:366,42,0 chrVIII 256020 . G T 2270 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=23.40;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2303,264,0 chrVIII 256342 . G C 2942 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2975,345,0 chrVIII 256905 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.17;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4012,450,0 chrVIII 256969 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.0939;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.62;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3155,354,0 chrVIII 257040 . A T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0867;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.97;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3471,381,0 chrVIII 257163 . A T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.52;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3340,378,0 chrVIII 257199 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.49;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2597,291,0 chrVIII 257349 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.06;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2482,279,0 chrVIII 257367 . T C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.9144;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.299;QD=21.06;ReadPosRankSum=1.703;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2602,297,0 chrVIII 257823 . G A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3786,417,0 chrVIII 258019 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3250,360,0 chrVIII 258412 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.25;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2625,300,0 chrVIII 258421 . A G 2455 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.64;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2488,288,0 chrVIII 258469 . T C 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=2.861;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.927;QD=15.11;ReadPosRankSum=2.411;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:1952,219,0 chrVIII 258472 . G A 1887 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=14.98;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1920,219,0 chrVIII 258556 . A G 2979 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5432;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.46;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3012,351,0 chrVIII 258587 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.69;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3018,336,0 chrVIII 258754 . A G 3027 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3525;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.09;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3060,354,0 chrVIII 259012 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2924,333,0 chrVIII 259045 . A G 2632 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2665,309,0 chrVIII 259495 . A G 1939 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.63;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1972,237,0 chrVIII 259528 . T C 1991 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.4087;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.18;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2024,234,0 chrVIII 259588 . T C 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.036;QD=23.06;ReadPosRankSum=1.660;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2247,255,0 chrVIII 259902 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.12;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2232,249,0 chrVIII 259909 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.32;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2351,267,0 chrVIII 260343 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.097;QD=23.27;ReadPosRankSum=1.703;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2825,327,0 chrVIII 261563 . A G 3105 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.65;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3138,363,0 chrVIII 261638 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.49;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3607,414,0 chrVIII 261641 . G T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.18;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3727,405,0 chrVIII 261724 . A T 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=116;Dels=0.00;FS=2.642;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.308;QD=19.88;ReadPosRankSum=2.344;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2339,258,0 chrVIII 262417 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=24.72;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2208,246,0 chrVIII 262470 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.47;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2802,315,0 chrVIII 262597 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=19.63;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2310,252,0 chrVIII 262610 . A G 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.667;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=-0.334;QD=18.22;ReadPosRankSum=1.702;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2128,246,0 chrVIII 262624 . C G 1780 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=15.89;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1813,213,0 chrVIII 262647 . A G 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=3.432;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=-0.417;QD=12.17;ReadPosRankSum=1.668;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:1372,159,0 chrVIII 262651 . A G 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=112;Dels=0.00;FS=7.231;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-1.022;QD=11.64;ReadPosRankSum=2.406;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1337,156,0 chrVIII 262734 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.88;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2637,291,0 chrVIII 262846 . T C 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=175;Dels=0.00;FS=2.863;HaplotypeScore=10.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.734;QD=21.67;ReadPosRankSum=2.393;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3793,435,0 chrVIII 263003 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.054;QD=21.16;ReadPosRankSum=1.689;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3364,384,0 chrVIII 263049 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=164;Dels=0.00;FS=9.230;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.067;QD=20.37;ReadPosRankSum=2.375;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3341,381,0 chrVIII 263207 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.52;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2915,321,0 chrVIII 263248 . T G 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.365;QD=21.97;ReadPosRankSum=1.702;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2559,294,0 chrVIII 263629 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.4552;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.44;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3500,384,0 chrVIII 263683 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.80;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3619,411,0 chrVIII 264103 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3426,387,0 chrVIII 264180 . G C 3929.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.71;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3929,450,0 chrVIII 264484 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.052;QD=21.49;ReadPosRankSum=1.711;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3589,411,0 chrVIII 264529 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.7855;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.38;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3916,435,0 chrVIII 264628 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.598;QD=21.80;ReadPosRankSum=1.650;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3685,417,0 chrVIII 264793 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.4896;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.920;QD=18.92;ReadPosRankSum=1.699;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:3993,471,0 chrVIII 264810 . T G 4003.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.72;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4003,453,0 chrVIII 264901 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.392;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.623;QD=21.88;ReadPosRankSum=1.714;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4158,492,0 chrVIII 265200 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3585,396,0 chrVIII 265246 . T C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=2.854;HaplotypeScore=12.2255;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.565;QD=22.74;ReadPosRankSum=2.414;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3216,366,0 chrVIII 265668 . C T 4298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.6953;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.232;QD=22.74;ReadPosRankSum=0.491;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4298,456,0 chrVIII 265740 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.0906;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.17;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3525,384,0 chrVIII 266203 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2326,270,0 chrVIII 266440 . T C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5274;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.571;QD=21.21;ReadPosRankSum=1.709;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3235,372,0 chrVIII 266690 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.38;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3110,345,0 chrVIII 266757 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=14.5341;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.60;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2820,309,0 chrVIII 266994 . C G 3575.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.07;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3575,417,0 chrVIII 267185 . G A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.91;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3742,429,0 chrVIII 267298 . A G 4231.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.77;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4231,495,0 chrVIII 267388 . C A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.81;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3402,387,0 chrVIII 267471 . C A 2915 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=19.56;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2948,327,0 chrVIII 267475 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=19.31;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2929,324,0 chrVIII 267487 . T C 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=12.913;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.205;QD=17.33;ReadPosRankSum=2.917;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2338,267,0 chrVIII 267488 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=17.57;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2405,273,0 chrVIII 267649 . T C 3062 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.11;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3095,351,0 chrVIII 267804 . G A 4701.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.51;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4701,522,0 chrVIII 268308 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2898;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.26;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2677,294,0 chrVIII 269395 . A G 5497.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=6.5998;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.81;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5497,642,0 chrVIII 269494 . G A 6285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=11.9500;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.392;QD=20.47;ReadPosRankSum=0.419;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:1,305:307:99:6285,720,0 chrVIII 270272 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.2458;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.13;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3043,336,0 chrVIII 270370 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3581,414,0 chrVIII 271207 . T G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.820;QD=20.85;ReadPosRankSum=1.714;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:4025,462,0 chrVIII 272321 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.90;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2727,300,0 chrVIII 272512 . C G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.51;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4369,521,0 chrVIII 273164 . A C 5160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=1.085;QD=20.08;ReadPosRankSum=1.665;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5160,585,0 chrVIII 273178 . A T 5251.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.20;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5251,585,0 chrVIII 273222 . G A 4988.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.05;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4988,546,0 chrVIII 273580 . G A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3786,417,0 chrVIII 273764 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.08;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3393,381,0 chrVIII 274295 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2258,246,0 chrVIII 274739 . A G 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=3.638;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.332;QD=19.08;ReadPosRankSum=1.699;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2017,231,0 chrVIII 274996 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=118;Dels=0.00;FS=3.027;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.392;QD=21.42;ReadPosRankSum=2.365;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2560,291,0 chrVIII 275150 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.27;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3054,339,0 chrVIII 275420 . A G 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=167;Dels=0.00;FS=6.042;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.030;QD=22.77;ReadPosRankSum=2.922;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3803,432,0 chrVIII 276242 . A G 1489 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.27;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1522,177,0 chrVIII 276840 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.27;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3305,372,0 chrVIII 277301 . G C 4035.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4035,474,0 chrVIII 278461 . G C 4479.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4479,519,0 chrVIII 278994 . A C 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=162;Dels=0.00;FS=2.983;HaplotypeScore=6.5440;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.250;QD=21.49;ReadPosRankSum=2.374;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3481,396,0 chrVIII 279007 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=9.9631;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.44;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3120,345,0 chrVIII 279197 . T G 5238.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.5441;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.77;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5238,600,0 chrVIII 279622 . T C 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=3.420;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.670;QD=22.75;ReadPosRankSum=1.716;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5051,591,0 chrVIII 279897 . T C 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=157;Dels=0.00;FS=3.008;HaplotypeScore=10.2411;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=2.199;QD=23.68;ReadPosRankSum=2.418;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3718,423,0 chrVIII 280087 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.67;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2079,228,0 chrVIII 280350 . T G 1495 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.06;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1528,174,0 chrVIII 280455 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0585;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.18;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3292,372,0 chrVIII 281264 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.940;QD=21.91;ReadPosRankSum=1.707;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3100,354,0 chrVIII 281430 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.475;QD=22.94;ReadPosRankSum=1.704;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2877,327,0 chrVIII 282877 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.48;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2731,300,0 chrVIII 283226 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.6841;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.28;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2262,270,0 chrVIII 283558 . A C 3333.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.37;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3333,387,0 chrVIII 283616 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=4.1445;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.571;QD=21.38;ReadPosRankSum=1.617;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3271,384,0 chrVIII 283637 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=146;Dels=0.01;FS=2.999;HaplotypeScore=9.6877;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.113;QD=19.99;ReadPosRankSum=2.398;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:2952,342,0 chrVIII 283677 . T A 2999 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=130.0560;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.26;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3032,342,0 chrVIII 283957 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.079;QD=17.50;ReadPosRankSum=1.647;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2168,249,0 chrVIII 283960 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.17;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2232,252,0 chrVIII 284047 . C G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.8856;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.99;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3464,396,0 chrVIII 284128 . A G 3094 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.49;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3127,351,0 chrVIII 284440 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=153;Dels=0.00;FS=3.032;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.186;QD=22.43;ReadPosRankSum=2.385;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3432,390,0 chrVIII 285871 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.1648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2728,300,0 chrVIII 285977 . A T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.7374;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3931,435,0 chrVIII 286318 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4111,447,0 chrVIII 286666 . G C 3495.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8442;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.40;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3495,396,0 chrVIII 286796 . T C 1597 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=57.0796;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.58;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1630,183,0 chrVIII 286801 . G C 1569 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=65.8211;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=20.38;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1602,180,0 chrVIII 287342 . T A 4307.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.67;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4307,480,0 chrVIII 287468 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=23.13;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4464,527,0 chrVIII 287666 . A G 2142 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;MQRankSum=-2.445;QD=11.70;ReadPosRankSum=2.072;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:2175,261,0 chrVIII 287669 . A C 2101 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=181;Dels=0.00;FS=2.835;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;MQRankSum=-1.961;QD=11.61;ReadPosRankSum=2.395;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:2134,255,0 chrVIII 287671 . A C 2218 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=34.75;MQ0=0;MQRankSum=-1.732;QD=12.39;ReadPosRankSum=1.655;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:2251,270,0 chrVIII 287675 . G C 2121 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=10.93;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:2154,261,0 chrVIII 287678 . A G 2157 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;MQRankSum=0.512;QD=11.18;ReadPosRankSum=1.660;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:2190,255,0 chrVIII 287702 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;MQRankSum=1.406;QD=13.00;ReadPosRankSum=1.717;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,222:228:99:2998,351,0 chrVIII 287899 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=188;Dels=0.00;FS=6.281;HaplotypeScore=12.8684;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-0.847;QD=21.80;ReadPosRankSum=2.423;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4099,471,0 chrVIII 288095 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.99;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3862,426,0 chrVIII 288305 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=202;Dels=0.00;FS=3.014;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.360;QD=20.82;ReadPosRankSum=2.425;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4206,483,0 chrVIII 288390 . T C 4977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.5221;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=1;MQRankSum=1.686;QD=21.36;ReadPosRankSum=1.717;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:2,227:233:99:4977,548,0 chrVIII 288884 . T G 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=8.573;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.540;QD=24.17;ReadPosRankSum=1.588;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1773,198,0 chrVIII 289239 . G A 390 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.73;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:48:423,48,0 chrVIII 289350 . A G 625 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=13.02;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:78:658,78,0 chrVIII 289518 . A C 1182 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.38;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1215,141,0 chrVIII 289659 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.39;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2642,300,0 chrVIII 289695 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.000;QD=21.35;ReadPosRankSum=1.676;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2680,306,0 chrVIII 289811 . A T 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=4.687;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.506;QD=22.84;ReadPosRankSum=1.687;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3495,393,0 chrVIII 289865 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.08;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2815,321,0 chrVIII 290253 . T C 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.252;QD=19.68;ReadPosRankSum=1.703;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,117:122:99:2434,282,0 chrVIII 290681 . C A 2481 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=19.1308;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.32;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2514,276,0 chrVIII 290711 . A C 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=0.269;QD=20.40;ReadPosRankSum=1.694;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1869,210,0 chrVIII 290747 . T C 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=75.9995;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.646;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1303,147,0 chrVIII 290766 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=16.29;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1418,159,0 chrVIII 290790 . C A 1444 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.61;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1477,162,0 chrVIII 290985 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.1020;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.20;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2961,330,0 chrVIII 291312 . G A 3455.01 SnpCluster AC=2;AF=1.00;AN=2;DP=270;Dels=0.01;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=1;QD=12.80;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:3455,378,0 chrVIII 291315 . A G 3187 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=267;Dels=0.00;FS=18.066;HaplotypeScore=3.8383;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=1;MQRankSum=-2.931;QD=11.94;ReadPosRankSum=3.356;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:5,262:267:99:3220,366,0 chrVIII 291318 . G A 2921 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=263;Dels=0.00;FS=9.121;HaplotypeScore=10.5086;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=1;MQRankSum=-2.234;QD=11.11;ReadPosRankSum=2.431;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:3,260:263:99:2954,336,0 chrVIII 291327 . T G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.556;DP=255;Dels=0.00;FS=8.851;HaplotypeScore=238.5005;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=1;MQRankSum=2.430;QD=10.46;ReadPosRankSum=2.411;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:3,252:255:99:2700,312,0 chrVIII 291360 . T G 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.725;DP=250;Dels=0.00;FS=8.774;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=1;MQRankSum=2.430;QD=8.09;ReadPosRankSum=-1.415;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:3,247:250:99:2055,237,0 chrVIII 291363 . A T 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=235;Dels=0.00;FS=17.584;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=1;MQRankSum=1.270;QD=8.27;ReadPosRankSum=0.548;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:5,230:235:99:1977,228,0 chrVIII 291381 . G A 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.848;DP=259;Dels=0.00;FS=8.491;HaplotypeScore=4.2245;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=1;MQRankSum=2.430;QD=6.72;ReadPosRankSum=-1.370;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:3,255:259:99:1774,201,0 chrVIII 291396 . G A 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DP=254;Dels=0.00;FS=7.697;HaplotypeScore=4.1934;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;MQRankSum=2.430;QD=7.33;ReadPosRankSum=0.111;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:1895,213,0 chrVIII 291399 . A G 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.845;DP=255;Dels=0.00;FS=11.407;HaplotypeScore=6.5594;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;MQRankSum=1.139;QD=7.20;ReadPosRankSum=1.417;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:3,250:255:99:1870,216,0 chrVIII 291411 . G A 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=261;Dels=0.00;FS=6.915;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;MQRankSum=2.431;QD=8.77;ReadPosRankSum=1.406;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:2323,258,0 chrVIII 291434 . C T 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.888;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;MQRankSum=1.339;QD=11.50;ReadPosRankSum=1.543;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:2794,309,0 chrVIII 291471 . G A 4875.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=18.97;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:4875,537,0 chrVIII 291528 . A G 5129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.241;DP=250;Dels=0.00;FS=7.045;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=-0.159;QD=20.52;ReadPosRankSum=4.474;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:7,243:250:99:5129,597,0 chrVIII 291696 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.1441;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.15;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3445,399,0 chrVIII 291731 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3272,387,0 chrVIII 292143 . T A 5472.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.49;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5472,609,0 chrVIII 292176 . T G 5247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=256;Dels=0.00;FS=2.979;HaplotypeScore=10.0775;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.380;QD=20.50;ReadPosRankSum=2.353;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:5247,612,0 chrVIII 292260 . A G 5576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=271;Dels=0.00;FS=8.719;HaplotypeScore=12.7722;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.030;QD=20.58;ReadPosRankSum=3.429;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:4,264:271:99:5576,633,0 chrVIII 292435 . G A 4288.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.77;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4288,474,0 chrVIII 292444 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.204;QD=18.66;ReadPosRankSum=1.681;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3807,444,0 chrVIII 293153 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.70;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2212,252,0 chrVIII 293342 . G T 1819 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.9186;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.65;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1852,210,0 chrVIII 293443 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.88;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1244,138,0 chrVIII 293487 . G A 1106 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=14.95;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1139,126,0 chrVIII 293529 . T A 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=4.771;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.541;QD=16.65;ReadPosRankSum=1.696;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1631,180,0 chrVIII 293740 . A G 2093 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.52;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2126,240,0 chrVIII 293780 . T C 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=117;Dels=0.00;FS=6.133;HaplotypeScore=112.4188;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.733;QD=20.03;ReadPosRankSum=2.923;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2377,273,0 chrVIII 293825 . T C 2325 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.06;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2358,273,0 chrVIII 293909 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2565,285,0 chrVIII 294025 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.39;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3100,339,0 chrVIII 294138 . T A 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.179;QD=22.49;ReadPosRankSum=1.712;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3914,441,0 chrVIII 294201 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=22.09;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3258,357,0 chrVIII 294204 . T G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=3.266;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-1.113;QD=21.38;ReadPosRankSum=0.841;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3048,345,0 chrVIII 294409 . A G 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=109;Dels=0.01;FS=2.440;HaplotypeScore=5.1420;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=0.576;QD=19.10;ReadPosRankSum=2.821;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:3,104:108:99:2115,243,0 chrVIII 294412 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=20.86;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2161,240,0 chrVIII 294446 . T A 1500 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.07;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1533,171,0 chrVIII 294447 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.45;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1550,171,0 chrVIII 294768 . T C 2549 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.3210;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.17;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2582,294,0 chrVIII 294900 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.06;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4104,453,0 chrVIII 294915 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.89;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3363,384,0 chrVIII 295200 . T G 4408.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.5528;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.59;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4408,524,0 chrVIII 295376 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.2255;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.35;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3829,426,0 chrVIII 295445 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=148;Dels=0.00;FS=6.095;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.678;QD=21.76;ReadPosRankSum=2.898;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3253,372,0 chrVIII 295470 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.4580;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.53;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3273,369,0 chrVIII 295620 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.9534;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.62;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4229,471,0 chrVIII 296229 . T G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.4477;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.66;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3414,387,0 chrVIII 296240 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.8391;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.90;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3573,396,0 chrVIII 296272 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.01;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2903,324,0 chrVIII 296845 . A G 4877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=4.647;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.510;QD=23.45;ReadPosRankSum=1.665;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4877,558,0 chrVIII 296890 . G A 5144.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.9011;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.96;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,218:224:99:5144,561,0 chrVIII 297072 . A T 4727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=225;Dels=0.00;FS=5.351;HaplotypeScore=19.9887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.513;QD=21.01;ReadPosRankSum=2.897;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:4727,525,0 chrVIII 297365 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=9.612;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.439;QD=23.73;ReadPosRankSum=2.411;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3047,345,0 chrVIII 297421 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3727,408,0 chrVIII 297669 . C T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.5801;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.20;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4528,498,0 chrVIII 297731 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.30;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3397,393,0 chrVIII 297766 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.666;QD=20.76;ReadPosRankSum=1.694;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3779,432,0 chrVIII 297979 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3743,426,0 chrVIII 298388 . G A 4914.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.40;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4914,552,0 chrVIII 298776 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=62.08;MQ0=0;QD=25.67;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2189,243,0 chrVIII 298950 . T A 2616 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.15;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2649,294,0 chrVIII 299651 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3784,435,0 chrVIII 300152 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.0737;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.35;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3373,384,0 chrVIII 301054 . A G 5482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=244;Dels=0.00;FS=6.332;HaplotypeScore=19.6659;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.543;QD=22.47;ReadPosRankSum=2.429;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:2,240:244:99:5482,630,0 chrVIII 301804 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.2637;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.79;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4786,528,0 chrVIII 303274 . T C 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=138;Dels=0.00;FS=2.822;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.140;QD=22.01;ReadPosRankSum=2.342;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3071,345,0 chrVIII 303493 . T A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.41;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3628,402,0 chrVIII 304458 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.75;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2948,333,0 chrVIII 304629 . T C 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=3.044;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.972;QD=23.37;ReadPosRankSum=2.398;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2253,258,0 chrVIII 305927 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2877,315,0 chrVIII 309135 . A G 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.079;QD=19.85;ReadPosRankSum=1.707;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2772,330,0 chrVIII 309963 . A G 2821 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2854,327,0 chrVIII 311373 . T C 5154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=216;Dels=0.00;FS=5.933;HaplotypeScore=14.3114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.836;QD=23.86;ReadPosRankSum=2.958;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:5154,585,0 chrVIII 311445 . C G 5623.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.49;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5623,651,0 chrVIII 311928 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=184;Dels=0.00;FS=6.433;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.714;QD=22.11;ReadPosRankSum=2.410;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4069,477,0 chrVIII 312174 . T G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.026;QD=21.22;ReadPosRankSum=1.697;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,198:203:99:4308,510,0 chrVIII 312220 . C G 4615.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4615,534,0 chrVIII 314005 . A G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.9376;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.498;QD=20.62;ReadPosRankSum=2.409;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2528,291,0 chrVIII 314622 . G A 2123 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2156,240,0 chrVIII 314714 . C T 644 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=11.1575;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=14.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:44:78:677,78,0 chrVIII 315333 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2299;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.17;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3406,369,0 chrVIII 315450 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.67;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4095,471,0 chrVIII 315789 . T C 2811 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.79;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2844,327,0 chrVIII 315831 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.391;QD=22.66;ReadPosRankSum=1.704;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2866,327,0 chrVIII 315879 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3977,456,0 chrVIII 315957 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.18;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3948,438,0 chrVIII 315984 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.25;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4147,462,0 chrVIII 316015 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.55;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4216,474,0 chrVIII 317153 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=216;Dels=0.00;FS=3.906;HaplotypeScore=22.4860;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.730;QD=19.35;ReadPosRankSum=-0.968;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,203:216:99:4179,474,0 chrVIII 317296 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.748;QD=19.30;ReadPosRankSum=1.677;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3687,417,0 chrVIII 317384 . A G 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.719;QD=20.79;ReadPosRankSum=1.716;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4408,507,0 chrVIII 317393 . A G 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=218;Dels=0.00;FS=5.614;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.917;QD=21.31;ReadPosRankSum=2.959;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:4645,525,0 chrVIII 317401 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.53;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5080,564,0 chrVIII 317558 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=23.23;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3462,387,0 chrVIII 317561 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.94;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3532,393,0 chrVIII 317992 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3484,387,0 chrVIII 318122 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=148;Dels=0.00;FS=2.959;HaplotypeScore=10.3560;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.429;QD=22.11;ReadPosRankSum=2.416;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3273,381,0 chrVIII 318497 . G A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.2793;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.86;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3957,432,0 chrVIII 318514 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=2.990;HaplotypeScore=3.2398;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.033;QD=19.77;ReadPosRankSum=2.389;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3255,372,0 chrVIII 318580 . A G 3031 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.3680;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=18.60;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3064,348,0 chrVIII 318584 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=6.7906;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.28;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3253,363,0 chrVIII 318865 . C T 4339.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.70;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4339,480,0 chrVIII 318866 . A G 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=234;Dels=0.00;FS=3.026;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-1.772;QD=17.70;ReadPosRankSum=2.407;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:4142,471,0 chrVIII 319046 . C T 4562.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.81;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4562,504,0 chrVIII 319202 . G A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.1756;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.35;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4693,528,0 chrVIII 319294 . A T 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=3.672;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.970;QD=23.71;ReadPosRankSum=1.714;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4528,507,0 chrVIII 319396 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.52;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4372,477,0 chrVIII 319400 . C A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.29;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4206,459,0 chrVIII 319436 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=204;Dels=0.00;FS=3.008;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.200;QD=16.75;ReadPosRankSum=2.425;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:3418,387,0 chrVIII 319609 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.32;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3731,429,0 chrVIII 319904 . G T 2597 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.64;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2630,303,0 chrVIII 320071 . A C 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.335;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.178;QD=22.01;ReadPosRankSum=1.649;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2784,321,0 chrVIII 320927 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.14;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4165,474,0 chrVIII 321084 . C T 4384.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.20;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4384,486,0 chrVIII 321902 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.879;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.151;QD=23.40;ReadPosRankSum=1.709;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3486,399,0 chrVIII 322176 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.4253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2741,306,0 chrVIII 322381 . C A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.04;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3258,372,0 chrVIII 322533 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.44;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3764,420,0 chrVIII 323486 . A C 1845 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.05;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1878,216,0 chrVIII 323497 . A G 1862 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.60;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1895,216,0 chrVIII 324669 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=7.978;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.263;QD=22.97;ReadPosRankSum=2.408;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2743,321,0 chrVIII 324770 . G A 4878.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.76;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4878,537,0 chrVIII 325071 . A G 5326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=240;Dels=0.00;FS=2.834;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.457;QD=22.19;ReadPosRankSum=2.378;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5326,603,0 chrVIII 325184 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.1979;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.44;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3905,438,0 chrVIII 325621 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9106;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.51;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3489,414,0 chrVIII 326185 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=237;Dels=0.00;FS=12.247;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.825;QD=16.84;ReadPosRankSum=2.387;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:2,234:237:99:3991,465,0 chrVIII 326461 . G C 2505 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.23;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2538,291,0 chrVIII 326639 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=80.6407;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=17.45;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1656,186,0 chrVIII 326679 . C T 1171 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=26.0846;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.52;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1204,132,0 chrVIII 327083 . G A 5172.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.59;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5172,576,0 chrVIII 327422 . A T 4903.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.1856;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.09;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4903,561,0 chrVIII 327845 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=3.109;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.401;QD=20.18;ReadPosRankSum=1.713;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3633,411,0 chrVIII 327854 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.89;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3640,399,0 chrVIII 328055 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.0689;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.866;QD=21.32;ReadPosRankSum=1.665;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3347,384,0 chrVIII 328271 . C A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.72;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3613,411,0 chrVIII 328366 . T A 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.240;QD=22.84;ReadPosRankSum=1.679;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4500,501,0 chrVIII 328590 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.18;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3041,333,0 chrVIII 328626 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2617,294,0 chrVIII 328764 . T A 2528 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9339;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.61;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2561,291,0 chrVIII 329295 . T C 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=196;Dels=0.00;FS=3.019;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.661;QD=23.46;ReadPosRankSum=2.399;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4598,519,0 chrVIII 329634 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.1594;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.10;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3658,423,0 chrVIII 330227 . G T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.6796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3356,375,0 chrVIII 330629 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.543;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.466;QD=21.36;ReadPosRankSum=1.699;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2254,267,0 chrVIII 330660 . T C 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.577;QD=20.19;ReadPosRankSum=1.692;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1830,207,0 chrVIII 331641 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=152;Dels=0.00;FS=2.566;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.729;QD=20.12;ReadPosRankSum=2.901;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3092,357,0 chrVIII 331868 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2595,285,0 chrVIII 334860 . A T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.96;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4121,456,0 chrVIII 334969 . T A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4340,474,0 chrVIII 335220 . G A 5021.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.91;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5021,552,0 chrVIII 335465 . A G 5524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=261;Dels=0.00;FS=4.356;HaplotypeScore=20.5268;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.756;QD=21.16;ReadPosRankSum=1.692;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:5524,630,0 chrVIII 335688 . T C 6066.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=19.6482;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.28;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6066,690,0 chrVIII 335817 . G T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.0348;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.48;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3523,384,0 chrVIII 335840 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=157;Dels=0.00;FS=10.064;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.276;QD=18.88;ReadPosRankSum=2.196;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:2997,342,0 chrVIII 335859 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=19.31;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2949,339,0 chrVIII 335894 . A G 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.695;QD=21.31;ReadPosRankSum=1.710;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3345,384,0 chrVIII 335949 . C A 2672 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=22.27;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2705,300,0 chrVIII 335964 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=20.81;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2343,261,0 chrVIII 335973 . C A 1810 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.57;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1843,210,0 chrVIII 335985 . C A 2039 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=19.24;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2072,228,0 chrVIII 336035 . A G 2405 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=20.38;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2438,279,0 chrVIII 336067 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=17.62;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2165,243,0 chrVIII 336075 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=18.30;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2083,231,0 chrVIII 336120 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=15.62;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1814,219,0 chrVIII 336130 . T C 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=-0.286;QD=14.77;ReadPosRankSum=1.702;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1732,204,0 chrVIII 336133 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=14.74;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1743,195,0 chrVIII 336486 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.06;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4104,459,0 chrVIII 336663 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=151;Dels=0.00;FS=9.943;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.466;QD=19.23;ReadPosRankSum=2.899;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2936,342,0 chrVIII 336696 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.06;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3144,351,0 chrVIII 336991 . A T 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=3.867;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.060;QD=22.45;ReadPosRankSum=1.706;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3064,339,0 chrVIII 337147 . C A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.80;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3808,444,0 chrVIII 337281 . C T 4516.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.52;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4516,498,0 chrVIII 337596 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.3403;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.77;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3809,432,0 chrVIII 337894 . G A 340 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.45;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:42:373,42,0 chrVIII 338068 . T C 1085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.226;QD=23.59;ReadPosRankSum=1.657;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1118,129,0 chrVIII 338239 . T C 2735 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.58;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2768,315,0 chrVIII 338392 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.5629;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.31;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3016,339,0 chrVIII 338404 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=3.019;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=1.440;QD=21.05;ReadPosRankSum=2.413;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2854,330,0 chrVIII 339120 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.56;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3708,411,0 chrVIII 339195 . C A 2521 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.67;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2554,294,0 chrVIII 339201 . A T 2460 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.84;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2493,276,0 chrVIII 339361 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.1009;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.11;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4112,453,0 chrVIII 339601 . A C 5600.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.8526;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.86;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:1,242:245:99:5600,645,0 chrVIII 339633 . A G 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=3.819;HaplotypeScore=3.2144;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.261;QD=21.11;ReadPosRankSum=1.650;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4496,507,0 chrVIII 339648 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.63;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3744,432,0 chrVIII 339656 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.62;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3807,423,0 chrVIII 339696 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.7374;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.11;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3401,393,0 chrVIII 340031 . T A 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.261;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=0.152;QD=15.99;ReadPosRankSum=1.677;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2032,225,0 chrVIII 340175 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.70;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3256,363,0 chrVIII 340523 . C A 3155 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5839;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.22;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3188,372,0 chrVIII 340650 . T C 2322 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.50;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2355,267,0 chrVIII 340958 . C T 4825.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.4784;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.55;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4825,543,0 chrVIII 341040 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=22.8058;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.29;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4525,504,0 chrVIII 341109 . A G 5578.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=18.8078;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.97;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,263:266:99:5578,648,0 chrVIII 341144 . T C 5114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.771;DP=276;Dels=0.00;FS=11.664;HaplotypeScore=7.6788;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-0.372;QD=18.53;ReadPosRankSum=3.737;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:5,270:276:99:5114,591,0 chrVIII 341150 . A G 5087.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=9.8469;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.63;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:5087,582,0 chrVIII 341249 . C T 6553.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=18.5818;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.91;SB=-3.574e+03 GT:AD:DP:GQ:PL 1/1:0,282:286:99:6553,732,0 chrVIII 341299 . T C 5215.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.53;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5215,617,0 chrVIII 341482 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8106;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=14.18;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2302,276,0 chrVIII 341488 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=14.59;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2222,249,0 chrVIII 341515 . T C 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.082;QD=16.37;ReadPosRankSum=1.709;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2440,276,0 chrVIII 342157 . G C 2570 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2603,297,0 chrVIII 342405 . A C 3826.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.37;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3826,441,0 chrVIII 342575 . G A 5399.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.9008;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.40;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5399,600,0 chrVIII 342686 . C T 4467.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.51;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4467,489,0 chrVIII 342723 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.79;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4200,471,0 chrVIII 342729 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.69;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4075,456,0 chrVIII 342786 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=17.87;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2982,339,0 chrVIII 343035 . A C 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.104;QD=22.79;ReadPosRankSum=1.694;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4171,489,0 chrVIII 343392 . G C 2568 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.53;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2601,294,0 chrVIII 343487 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.36;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1913,213,0 chrVIII 343561 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1884,213,0 chrVIII 344834 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.84;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2989,333,0 chrVIII 344907 . C A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.55;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3428,378,0 chrVIII 344942 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.86;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3323,369,0 chrVIII 345188 . T C 2831 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.45;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2864,336,0 chrVIII 345266 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=23.12;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3445,387,0 chrVIII 345359 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.6242;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.490;QD=21.21;ReadPosRankSum=1.708;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3130,360,0 chrVIII 345425 . T C 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.871;QD=21.91;ReadPosRankSum=1.696;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4272,483,0 chrVIII 345440 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.63;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3850,438,0 chrVIII 345623 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.52;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3292,372,0 chrVIII 345844 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2275,258,0 chrVIII 346315 . G T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.74;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3740,426,0 chrVIII 347014 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.02;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2235,249,0 chrVIII 347026 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.98;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1871,213,0 chrVIII 347311 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.09;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2504,273,0 chrVIII 347431 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2699,306,0 chrVIII 347491 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1964,219,0 chrVIII 347716 . T C 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=94;Dels=0.00;FS=3.039;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.249;QD=20.37;ReadPosRankSum=2.371;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1948,228,0 chrVIII 347957 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.897;QD=22.18;ReadPosRankSum=1.670;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,111:115:99:2584,294,0 chrVIII 348003 . A G 2653 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.48;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2686,303,0 chrVIII 348037 . G C 2470 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.15;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,138:144:99:2503,288,0 chrVIII 348041 . A C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.01;FS=4.386;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.503;QD=16.91;ReadPosRankSum=1.617;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2620,297,0 chrVIII 348142 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.15;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3216,357,0 chrVIII 348154 . C A 2717 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.64;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2750,318,0 chrVIII 348178 . T C 2277 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=15.92;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2310,270,0 chrVIII 348326 . A C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=156;Dels=0.00;FS=2.952;HaplotypeScore=12.0859;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.654;QD=21.44;ReadPosRankSum=2.418;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3345,378,0 chrVIII 348420 . G C 2323 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.92;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2356,264,0 chrVIII 348461 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.91;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2061,228,0 chrVIII 348462 . T C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=98;Dels=0.00;FS=6.633;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.962;QD=20.15;ReadPosRankSum=2.398;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,94:98:99:2008,228,0 chrVIII 348572 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.31;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2509,285,0 chrVIII 348634 . G T 2091 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.91;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2124,240,0 chrVIII 348790 . A G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.739;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.437;QD=21.14;ReadPosRankSum=1.704;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2633,309,0 chrVIII 348802 . A G 2490 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.23;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2523,288,0 chrVIII 348883 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.296;QD=23.95;ReadPosRankSum=1.709;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3617,405,0 chrVIII 348973 . A C 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=4.2415;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.601;QD=20.52;ReadPosRankSum=1.685;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3049,363,0 chrVIII 348982 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=6.344;HaplotypeScore=6.6076;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.106;QD=20.03;ReadPosRankSum=2.401;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3078,351,0 chrVIII 349328 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4612;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.77;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3268,360,0 chrVIII 349353 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.15;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2529,279,0 chrVIII 349388 . T C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=3.055;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.533;QD=20.17;ReadPosRankSum=2.371;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1929,222,0 chrVIII 349420 . T C 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.8845;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.632;QD=22.39;ReadPosRankSum=1.699;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2384,270,0 chrVIII 349468 . A G 2357 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.23;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2390,276,0 chrVIII 349489 . G A 2133 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.12;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2166,249,0 chrVIII 349552 . C G 1703 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.41;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1736,195,0 chrVIII 349648 . T G 2516 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.07;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2549,291,0 chrVIII 349745 . C G 1974 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=17.62;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2007,225,0 chrVIII 349748 . A G 1961 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.91;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1994,225,0 chrVIII 349882 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.34;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3067,336,0 chrVIII 349912 . A C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.071;QD=21.57;ReadPosRankSum=0.251;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2880,330,0 chrVIII 350236 . G T 2241 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.94;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2274,258,0 chrVIII 350566 . T C 1897 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1930,228,0 chrVIII 350845 . T C 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=140;Dels=0.00;FS=4.378;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.240;QD=20.04;ReadPosRankSum=1.656;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:2838,339,0 chrVIII 351073 . G C 1649 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1682,195,0 chrVIII 351418 . C G 2976 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.88;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:3009,354,0 chrVIII 351568 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.65;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2924,330,0 chrVIII 351601 . T C 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=120;Dels=0.00;FS=12.965;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.134;QD=18.52;ReadPosRankSum=2.942;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2256,270,0 chrVIII 351610 . T C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=127;Dels=0.00;FS=7.314;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.571;QD=17.69;ReadPosRankSum=2.372;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2279,264,0 chrVIII 351784 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.55;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3756,408,0 chrVIII 351889 . G A 4899.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=20.3061;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.17;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4899,549,0 chrVIII 352512 . A G 2466 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.22;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2499,285,0 chrVIII 352531 . T C 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.526;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=0;MQRankSum=-0.321;QD=0.32;ReadPosRankSum=-3.547;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:120,5:125:51:70,0,51 chrVIII 352532 . T C 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=0;MQRankSum=0.334;QD=0.18;ReadPosRankSum=3.748;SB=-1.163e+03 GT:AD:DP:GQ:PL 0/1:5,120:125:53:53,0,59 chrVIII 352905 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.07;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2778,306,0 chrVIII 353097 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.3024;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.74;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3298,366,0 chrVIII 353157 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.57;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3634,417,0 chrVIII 353343 . A C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5859;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.507;QD=19.86;ReadPosRankSum=1.704;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2496,285,0 chrVIII 354035 . T G 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.145;DP=185;Dels=0.00;FS=12.676;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.196;QD=21.25;ReadPosRankSum=3.393;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:4,179:185:99:3932,444,0 chrVIII 354125 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4046,468,0 chrVIII 354571 . C T 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9899;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.447;QD=20.04;ReadPosRankSum=1.640;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3079,342,0 chrVIII 354573 . T C 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9899;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.247;QD=19.51;ReadPosRankSum=2.258;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3038,342,0 chrVIII 354672 . T G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=161;Dels=0.00;FS=6.551;HaplotypeScore=13.7952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.305;QD=16.81;ReadPosRankSum=2.419;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2739,312,0 chrVIII 354747 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.14;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3875,429,0 chrVIII 355175 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3040,336,0 chrVIII 355349 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.98;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4365,495,0 chrVIII 355733 . T C 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=200;Dels=0.00;FS=3.004;HaplotypeScore=11.7263;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.841;QD=22.01;ReadPosRankSum=2.425;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4402,507,0 chrVIII 356131 . G C 2593 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.58;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2626,303,0 chrVIII 356232 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.79;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2691,303,0 chrVIII 356260 . T C 2481 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.38;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2514,294,0 chrVIII 356286 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.53;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2747,303,0 chrVIII 356291 . T C 2534 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.05;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2567,294,0 chrVIII 356819 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.3070;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.42;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3442,375,0 chrVIII 356996 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3493,399,0 chrVIII 357046 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.04;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2942,324,0 chrVIII 357943 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.36;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2439,270,0 chrVIII 358013 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=-1.074;QD=22.33;ReadPosRankSum=1.697;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2266,258,0 chrVIII 358234 . A T 1962 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.22;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1995,219,0 chrVIII 358311 . A C 1423 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.93;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1456,165,0 chrVIII 358374 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.87;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1717,189,0 chrVIII 358612 . G C 121.13 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=2.82;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:18:154,18,0 chrVIII 358619 . A G 136.06 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=3.32;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,40:41:21:169,21,0 chrVIII 358703 . A G 1019 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=24.26;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1052,117,0 chrVIII 358745 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=24.23;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2165,240,0 chrVIII 358913 . A G 3074 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.77;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3107,357,0 chrVIII 359105 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.42;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3431,384,0 chrVIII 359203 . C T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4215,474,0 chrVIII 359316 . T C 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.090;DP=131;Dels=0.00;FS=3.018;HaplotypeScore=119.0646;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=2.033;QD=18.34;ReadPosRankSum=1.825;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2435,282,0 chrVIII 359540 . T A 2908 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.20;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2941,324,0 chrVIII 359563 . A G 3108 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.14;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3141,357,0 chrVIII 359581 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.732;QD=20.39;ReadPosRankSum=1.659;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2928,333,0 chrVIII 359634 . T A 2421 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.05;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2454,270,0 chrVIII 359669 . T G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=3.139;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.622;QD=21.48;ReadPosRankSum=1.631;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2267,267,0 chrVIII 359915 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=4.225;HaplotypeScore=12.2722;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.042;QD=21.47;ReadPosRankSum=1.690;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3521,417,0 chrVIII 360002 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.668;QD=21.73;ReadPosRankSum=1.713;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3889,447,0 chrVIII 360080 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.89;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2470,279,0 chrVIII 360186 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.73;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2420,267,0 chrVIII 360262 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.17;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1788,204,0 chrVIII 360415 . G A 768 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.45;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:801,90,0 chrVIII 360430 . A G 1047 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.04;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1080,123,0 chrVIII 360489 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.57;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1555,174,0 chrVIII 360543 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.61;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1723,189,0 chrVIII 360630 . T C 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.342;QD=21.87;ReadPosRankSum=1.646;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1783,204,0 chrVIII 360689 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.30;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1572,180,0 chrVIII 360717 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.73;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1829,207,0 chrVIII 360746 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.58;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2040,222,0 chrVIII 360898 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.40;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2461,273,0 chrVIII 360906 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0537;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.76;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2543,279,0 chrVIII 361205 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.79;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3270,372,0 chrVIII 361212 . C T 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=173;Dels=0.00;FS=3.168;HaplotypeScore=4.7659;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.412;QD=16.88;ReadPosRankSum=1.258;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,168:173:99:2954,345,0 chrVIII 361245 . A G 2618 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=16.89;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2651,303,0 chrVIII 361272 . G T 1946 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=14.41;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1979,228,0 chrVIII 361539 . A T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.75;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4480,495,0 chrVIII 361569 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.64;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3135,345,0 chrVIII 361697 . A C 1234 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3307;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=8.12;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,150:152:99:1267,144,0 chrVIII 362504 . A G 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.5165;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.680;QD=22.35;ReadPosRankSum=1.706;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3006,342,0 chrVIII 362567 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.3619;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.21;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3050,351,0 chrVIII 362829 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=17.21;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1840,201,0 chrVIII 362833 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.09;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1969,216,0 chrVIII 363155 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.22;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2899,324,0 chrVIII 363626 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.32;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3965,441,0 chrVIII 363629 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.47;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3933,441,0 chrVIII 363695 . A G 4947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.068;QD=21.60;ReadPosRankSum=1.717;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4947,576,0 chrVIII 364046 . T A 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.280;QD=24.35;ReadPosRankSum=1.694;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4480,492,0 chrVIII 364222 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=208;Dels=0.00;FS=3.203;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=1.029;QD=20.53;ReadPosRankSum=1.715;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4271,492,0 chrVIII 364400 . G T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.66;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3852,429,0 chrVIII 364427 . C A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.68;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3468,393,0 chrVIII 364433 . C A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.54;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3257,369,0 chrVIII 364439 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=154;Dels=0.00;FS=11.477;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.091;QD=19.03;ReadPosRankSum=3.762;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:5,149:154:99:2963,348,0 chrVIII 364600 . C G 2800 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.87;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2833,324,0 chrVIII 364680 . C A 2800 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.14;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2833,309,0 chrVIII 364692 . T C 2677 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.50;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2710,318,0 chrVIII 364782 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.38;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1756,195,0 chrVIII 364791 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.46;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1942,222,0 chrVIII 364860 . C T 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.452;DP=99;Dels=0.00;FS=5.332;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.242;QD=22.47;ReadPosRankSum=0.122;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2258,236,0 chrVIII 364974 . G C 2600 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.64;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2633,294,0 chrVIII 365084 . T C 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.280;QD=22.57;ReadPosRankSum=1.280;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1590,158,0 chrVIII 365135 . C G 2193 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.33;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2226,252,0 chrVIII 365187 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.10;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2897,333,0 chrVIII 365208 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.8866;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=24.14;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2857,321,0 chrVIII 365358 . A G 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=217;Dels=0.00;FS=7.663;HaplotypeScore=9.0697;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.962;QD=21.18;ReadPosRankSum=1.684;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4596,557,0 chrVIII 365376 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=1;QD=20.30;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4121,459,0 chrVIII 365412 . T G 284.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.563;DP=160;Dels=0.01;FS=11.228;HaplotypeScore=44.7848;MLEAC=1;MLEAF=0.500;MQ=50.05;MQ0=1;MQRankSum=-0.831;QD=1.78;ReadPosRankSum=3.606;SB=-4.550e+02 GT:AD:DP:GQ:PL 0/1:66,93:159:99:314,0,112 chrVIII 365415 . G T 164.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.643;DP=159;Dels=0.00;FS=10.819;HaplotypeScore=111.5969;MLEAC=1;MLEAF=0.500;MQ=49.98;MQ0=1;MQRankSum=-3.268;QD=1.03;ReadPosRankSum=3.296;SB=-5.330e+02 GT:AD:DP:GQ:PL 0/1:67,91:159:99:194,0,121 chrVIII 365442 . G A 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.860;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5552;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=1;MQRankSum=-0.126;QD=11.91;ReadPosRankSum=1.549;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:1843,210,0 chrVIII 365964 . T G 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.384;QD=20.87;ReadPosRankSum=1.703;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5008,596,0 chrVIII 366137 . T C 6264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=286;Dels=0.00;FS=6.637;HaplotypeScore=14.6652;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.158;QD=21.90;ReadPosRankSum=2.415;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:2,283:286:99:6264,726,0 chrVIII 366283 . C T 5050.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.65;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5050,552,0 chrVIII 366663 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=127;Dels=0.00;FS=7.701;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.279;QD=22.67;ReadPosRankSum=3.688;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:5,122:127:99:2912,327,0 chrVIII 366747 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=21.97;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2625,303,0 chrVIII 366783 . A G 2849 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0706;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.92;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2882,327,0 chrVIII 367303 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3345,366,0 chrVIII 368538 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.70;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1772,198,0 chrVIII 368547 . A C 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=83;Dels=0.00;FS=5.754;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-1.031;QD=17.39;ReadPosRankSum=1.688;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,78:83:99:1476,174,0 chrVIII 368559 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.26;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1804,198,0 chrVIII 368724 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.93;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2899,321,0 chrVIII 368916 . A G 5423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=237;Dels=0.00;FS=10.763;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.233;QD=22.88;ReadPosRankSum=2.387;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5423,621,0 chrVIII 369473 . C A 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=137;Dels=0.00;FS=3.745;HaplotypeScore=9.0959;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=1.091;QD=18.64;ReadPosRankSum=1.681;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2586,282,0 chrVIII 369483 . T A 2479 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.50;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2512,276,0 chrVIII 369871 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.31;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2676,294,0 chrVIII 369898 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.43;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2881,315,0 chrVIII 370655 . T G 1410 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1443,159,0 chrVIII 370657 . G A 1298 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1331,156,0 chrVIII 370683 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=16.65;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1032,114,0 chrVIII 370697 . T C 692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;MQRankSum=-0.247;QD=12.36;ReadPosRankSum=1.670;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:84:725,84,0 chrVIII 370707 . C T 792 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=13.42;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:93:825,93,0 chrVIII 370842 . G C 3124 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.49;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3157,369,0 chrVIII 370980 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=160;Dels=0.00;FS=3.446;HaplotypeScore=16.1177;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.688;QD=21.76;ReadPosRankSum=0.717;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3482,381,0 chrVIII 371268 . T A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.72;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3953,441,0 chrVIII 371744 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.4263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1449,165,0 chrVIII 371815 . C G 1266 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.48;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1299,156,0 chrVIII 371998 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.55;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4190,465,0 chrVIII 372114 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.6798;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4474,495,0 chrVIII 372426 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1559;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.92;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3415,390,0 chrVIII 372470 . T A 2797 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.54;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2830,315,0 chrVIII 372533 . T C 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=3.056;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.117;QD=20.02;ReadPosRankSum=2.268;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1935,222,0 chrVIII 372577 . G C 2138 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=21.60;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2171,252,0 chrVIII 372964 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=209;Dels=0.00;FS=3.907;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.682;QD=20.28;ReadPosRankSum=1.715;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4239,480,0 chrVIII 373555 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.7431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3358,372,0 chrVIII 373732 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.229;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.312;QD=21.90;ReadPosRankSum=1.637;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4008,462,0 chrVIII 373987 . T C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.0454;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.226;QD=22.33;ReadPosRankSum=1.707;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3115,360,0 chrVIII 374065 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=22.42;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3060,348,0 chrVIII 374774 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=167;Dels=0.00;FS=5.663;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-2.127;QD=20.76;ReadPosRankSum=2.958;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3467,402,0 chrVIII 374792 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;DP=170;Dels=0.00;FS=8.003;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.540;QD=18.67;ReadPosRankSum=3.367;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:3207,375,0 chrVIII 374794 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=165;Dels=0.00;FS=15.893;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.573;QD=18.73;ReadPosRankSum=3.332;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:99:3124,369,0 chrVIII 375059 . A G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.5421;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.636;QD=20.89;ReadPosRankSum=1.660;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3062,345,0 chrVIII 375097 . C G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.28;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3512,422,0 chrVIII 375221 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=132;Dels=0.00;FS=2.970;HaplotypeScore=13.7565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.685;QD=20.63;ReadPosRankSum=2.412;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2756,315,0 chrVIII 375520 . A G 969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.942;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.5682;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.434;QD=14.25;ReadPosRankSum=2.377;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1002,120,0 chrVIII 375560 . T G 1280 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1313,150,0 chrVIII 375658 . T G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.524;QD=23.30;ReadPosRankSum=1.663;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2363,267,0 chrVIII 375686 . A C 2027 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.03;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2060,234,0 chrVIII 375703 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.91;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1745,192,0 chrVIII 375742 . A G 1124 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.73;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1157,138,0 chrVIII 375825 . T C 2298 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2331,270,0 chrVIII 375930 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.11;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2608,288,0 chrVIII 375943 . A G 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=126;Dels=0.00;FS=9.195;HaplotypeScore=11.2161;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.130;QD=17.77;ReadPosRankSum=2.410;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,121:126:99:2272,267,0 chrVIII 376014 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.685;DP=114;Dels=0.00;FS=5.933;HaplotypeScore=11.9546;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.108;QD=20.74;ReadPosRankSum=2.937;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:3,109:114:99:2397,279,0 chrVIII 376120 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.88;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3938,465,0 chrVIII 376263 . C A 2957 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2990,342,0 chrVIII 376320 . G C 2799 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.53;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2832,321,0 chrVIII 376395 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.85;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3564,399,0 chrVIII 376477 . A C 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.266;QD=20.60;ReadPosRankSum=1.703;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2526,288,0 chrVIII 376578 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2790,309,0 chrVIII 376829 . C G 2721 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.09;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2754,318,0 chrVIII 377068 . C G 2591 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=21.41;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2624,300,0 chrVIII 377086 . G C 2216 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.51;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2249,258,0 chrVIII 377259 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=21.87;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2308,252,0 chrVIII 377268 . T C 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.896;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-0.050;QD=19.36;ReadPosRankSum=1.665;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2066,240,0 chrVIII 377294 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.57;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1892,216,0 chrVIII 377321 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.47;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1883,207,0 chrVIII 377349 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=4.503;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=1.102;QD=20.86;ReadPosRankSum=1.701;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2369,270,0 chrVIII 377373 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.85;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2619,315,0 chrVIII 377460 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=12.073;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.696;QD=22.92;ReadPosRankSum=2.398;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3277,378,0 chrVIII 377707 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.79;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2764,306,0 chrVIII 377712 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.05;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2605,291,0 chrVIII 377752 . G C 2066 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=17.36;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,114:119:99:2099,243,0 chrVIII 377834 . G C 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=3.043;HaplotypeScore=11.2699;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.740;QD=16.91;ReadPosRankSum=2.325;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2028,231,0 chrVIII 377841 . T A 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.155;QD=16.60;ReadPosRankSum=1.704;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2075,237,0 chrVIII 377956 . T C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=109;Dels=0.00;FS=7.280;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=1.607;QD=20.90;ReadPosRankSum=2.313;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2311,273,0 chrVIII 378025 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=23.98;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2455,282,0 chrVIII 378065 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.20;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2209,258,0 chrVIII 378101 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=18.47;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1880,207,0 chrVIII 378194 . T C 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=-0.023;QD=19.99;ReadPosRankSum=2.173;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3232,360,0 chrVIII 378228 . A G 4024.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.7153;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.32;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4024,456,0 chrVIII 378234 . A G 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=214;Dels=0.00;FS=8.078;HaplotypeScore=12.9400;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.503;QD=18.22;ReadPosRankSum=1.683;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,211:213:99:3899,461,0 chrVIII 378579 . G A 4598.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.20;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4598,510,0 chrVIII 378618 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7655;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.99;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3505,405,0 chrVIII 378642 . A C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.562;QD=20.64;ReadPosRankSum=1.709;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3109,369,0 chrVIII 378942 . G A 4962.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.20;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4962,567,0 chrVIII 379023 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=4.580;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.175;QD=22.37;ReadPosRankSum=1.713;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3982,479,0 chrVIII 379070 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8933;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.70;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3645,420,0 chrVIII 379353 . G T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3474,381,0 chrVIII 379789 . A C 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.897;QD=21.39;ReadPosRankSum=1.669;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3594,405,0 chrVIII 380530 . A G 2696 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.28;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2729,324,0 chrVIII 380531 . A G 2839 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.90;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2872,324,0 chrVIII 380685 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.197;QD=19.51;ReadPosRankSum=2.393;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2589,297,0 chrVIII 380748 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.60;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2820,321,0 chrVIII 380790 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.43;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2774,309,0 chrVIII 380814 . A G 2713 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.99;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2746,312,0 chrVIII 381058 . C A 2894 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.76;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2927,312,0 chrVIII 381493 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=15.74;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1198,138,0 chrVIII 381507 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.92;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1302,147,0 chrVIII 381521 . T A 1463 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.51;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1496,165,0 chrVIII 381642 . G C 1582 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.93;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1615,186,0 chrVIII 381677 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.49;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1467,162,0 chrVIII 381693 . A G 1337 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.10;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1370,153,0 chrVIII 381772 . A T 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.485;QD=20.02;ReadPosRankSum=1.547;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1154,129,0 chrVIII 381790 . T C 877 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.07;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:910,105,0 chrVIII 381832 . C G 911 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.22;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:944,108,0 chrVIII 382565 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.68;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3356,381,0 chrVIII 383029 . A G 3009 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=165;Dels=0.00;FS=2.554;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=-1.445;QD=18.24;ReadPosRankSum=2.921;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3042,351,0 chrVIII 383032 . C G 2967 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=18.78;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3000,348,0 chrVIII 383035 . G A 2995 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=18.84;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3028,336,0 chrVIII 383099 . A T 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=207;Dels=0.00;FS=5.517;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.351;QD=20.47;ReadPosRankSum=2.956;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:4238,471,0 chrVIII 383247 . T A 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.547;QD=20.76;ReadPosRankSum=1.706;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2752,303,0 chrVIII 383257 . T G 2535 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=19.80;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2568,291,0 chrVIII 383395 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.03;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2382,273,0 chrVIII 383476 . T C 2103 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=24.17;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2136,243,0 chrVIII 383678 . A G 2122 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2155,252,0 chrVIII 383744 . A G 2849 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2882,336,0 chrVIII 383825 . T C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=3.118;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.084;QD=20.15;ReadPosRankSum=1.676;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2511,297,0 chrVIII 384631 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.744;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.9900;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.012;QD=19.20;ReadPosRankSum=2.769;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:3,80:84:99:1646,172,0 chrVIII 384685 . A G 2663 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.9526;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.19;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2696,306,0 chrVIII 385098 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.41;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2386,270,0 chrVIII 385875 . T C 4818.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=29.6753;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.80;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4818,561,0 chrVIII 385984 . G T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.26;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4031,444,0 chrVIII 386355 . T C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.7954;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.63;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3931,467,0 chrVIII 386487 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6880;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=18.86;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3164,351,0 chrVIII 387002 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7070;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=23.74;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2407,261,0 chrVIII 387076 . T G 824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.257;DP=55;Dels=0.00;FS=5.936;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;MQRankSum=-0.510;QD=14.98;ReadPosRankSum=1.664;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:2,51:55:96:857,96,0 chrVIII 387077 . T A 801 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=15.11;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:96:834,96,0 chrVIII 387439 . T C 1748 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1781,204,0 chrVIII 387483 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1209,132,0 chrVIII 387620 . G A 574 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:66:607,66,0 chrVIII 387685 . G A 629 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.30;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:75:662,75,0 chrVIII 387749 . A G 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=63;Dels=0.00;FS=13.153;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;MQRankSum=-1.062;QD=22.22;ReadPosRankSum=1.621;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1433,165,0 chrVIII 387780 . C T 1324 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.76;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1357,150,0 chrVIII 387797 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.12;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1484,165,0 chrVIII 387812 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=15.75;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1702,201,0 chrVIII 387848 . A G 1677 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.29;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1710,201,0 chrVIII 387911 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.5186;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.59;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:3012,339,0 chrVIII 388397 . A T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3314,369,0 chrVIII 388619 . C A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.85;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3863,435,0 chrVIII 388791 . C A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=22.96;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3651,411,0 chrVIII 388948 . G T 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=74;Dels=0.00;FS=7.112;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=1.540;QD=20.78;ReadPosRankSum=-0.866;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1571,155,0 chrVIII 388949 . G T 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.130;DP=71;Dels=0.00;FS=7.249;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;MQRankSum=1.230;QD=21.54;ReadPosRankSum=-0.778;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1562,152,0 chrVIII 389014 . T A 1150 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=16.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1183,132,0 chrVIII 389017 . A G 1054 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;MQRankSum=-2.622;QD=15.73;ReadPosRankSum=2.895;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1087,126,0 chrVIII 389023 . A G 1114 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;MQRankSum=-1.732;QD=17.41;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1147,129,0 chrVIII 389048 . A G 1056 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;MQRankSum=-2.403;QD=20.31;ReadPosRankSum=2.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1089,126,0 chrVIII 389050 . A G 1058 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1091,126,0 chrVIII 389052 . G A 1074 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1107,126,0 chrVIII 389075 . G T 532.79 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.828;DP=39;Dels=0.00;FS=49.151;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;MQRankSum=-3.264;QD=13.66;ReadPosRankSum=-0.023;SB=-7.983e-01 GT:AD:DP:GQ:PL 1/1:4,35:39:10:565,10,0 chrVIII 389077 . A T 536.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;DP=39;Dels=0.00;FS=49.151;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.92;MQ0=0;MQRankSum=-3.264;QD=13.74;ReadPosRankSum=-3.264;SB=-3.019e+00 GT:AD:DP:GQ:PL 0/1:4,35:39:30:566,0,30 chrVIII 389187 . G T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.70;MQ0=22;MQRankSum=1.026;QD=0.61;ReadPosRankSum=1.026;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:23,3:26:6:47,6,0 chrVIII 389251 . T A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=109;Dels=0.00;FS=4.771;HaplotypeScore=3.4667;MLEAC=2;MLEAF=1.00;MQ=4.91;MQ0=103;MQRankSum=1.380;QD=0.25;ReadPosRankSum=-1.380;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:103,6:109:6:58,6,0 chrVIII 389520 . T C 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.5110;MLEAC=1;MLEAF=0.500;MQ=35.09;MQ0=0;MQRankSum=2.099;QD=0.40;ReadPosRankSum=-2.493;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:59,3:62:55:55,0,100 chrVIII 389545 . T C 935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.310;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;MQRankSum=0.084;QD=11.40;ReadPosRankSum=0.549;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:968,114,0 chrVIII 389801 . A G 3474.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.18;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3474,414,0 chrVIII 389898 . T A 1775 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.94;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1808,204,0 chrVIII 389909 . A G 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=93;Dels=0.00;FS=2.972;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.437;QD=18.73;ReadPosRankSum=2.211;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1775,204,0 chrVIII 389953 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.07;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2435,267,0 chrVIII 389979 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.66;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3065,348,0 chrVIII 390041 . A T 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.657;DP=132;Dels=0.00;FS=2.588;HaplotypeScore=9.3756;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.573;QD=21.74;ReadPosRankSum=2.901;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2903,330,0 chrVIII 390446 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.3820;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.94;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3601,411,0 chrVIII 390561 . T C 2502 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6009;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.03;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2535,291,0 chrVIII 390630 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.19;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2940,324,0 chrVIII 390647 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.38;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3166,357,0 chrVIII 390900 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.08;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2141,237,0 chrVIII 391205 . T A 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=119;Dels=0.00;FS=7.409;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.747;QD=22.37;ReadPosRankSum=2.408;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2695,303,0 chrVIII 391269 . T A 3091 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.62;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3124,345,0 chrVIII 391303 . C G 3101 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.01;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3134,357,0 chrVIII 391307 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.45;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3121,345,0 chrVIII 391334 . A G 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.443;QD=18.10;ReadPosRankSum=1.705;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2368,270,0 chrVIII 391351 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=16.43;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:1972,216,0 chrVIII 391559 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.92;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1436,159,0 chrVIII 391599 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.40;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1448,162,0 chrVIII 391739 . A G 580 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=15.26;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:72:613,72,0 chrVIII 392043 . T C 1935 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1968,231,0 chrVIII 392078 . G C 1742 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1775,204,0 chrVIII 392275 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7743;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.35;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3336,369,0 chrVIII 392401 . C T 1476 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1509,168,0 chrVIII 392524 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.71;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1483,168,0 chrVIII 392676 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.643;QD=23.47;ReadPosRankSum=1.710;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3661,420,0 chrVIII 393017 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2462,273,0 chrVIII 393074 . A G 2286 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2319,273,0 chrVIII 393364 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=153;Dels=0.00;FS=5.980;HaplotypeScore=12.8393;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.638;QD=19.68;ReadPosRankSum=2.875;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3044,354,0 chrVIII 393466 . A T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.01;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3246,369,0 chrVIII 393530 . A G 4378.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.68;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4378,510,0 chrVIII 393725 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=1.013;QD=18.58;ReadPosRankSum=1.714;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3493,408,0 chrVIII 393734 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=196;Dels=0.00;FS=3.147;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.089;QD=18.44;ReadPosRankSum=1.714;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3615,423,0 chrVIII 394206 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.52;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1839,204,0 chrVIII 394728 . A G 5153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=220;Dels=0.00;FS=7.241;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.693;QD=23.42;ReadPosRankSum=2.404;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:2,216:220:99:5153,582,0 chrVIII 394959 . G A 5055.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.3159;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.17;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5055,558,0 chrVIII 395132 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.02;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3785,417,0 chrVIII 395164 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=3.533;HaplotypeScore=519.4706;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=0.418;QD=15.70;ReadPosRankSum=1.698;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:3252,384,0 chrVIII 395195 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=16.15;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3440,387,0 chrVIII 395246 . G C 3987.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.4215;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=19.08;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:3987,456,0 chrVIII 395386 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=19.69;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2848,333,0 chrVIII 395596 . A C 3436.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.86;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3436,408,0 chrVIII 395607 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.11;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4046,453,0 chrVIII 395744 . G A 4638.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.19;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4638,510,0 chrVIII 396036 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.98;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3912,429,0 chrVIII 396060 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.861;QD=20.05;ReadPosRankSum=1.633;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3509,399,0 chrVIII 396288 . A T 4201.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.47;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4201,462,0 chrVIII 396423 . C T 5289.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.4777;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.24;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5289,600,0 chrVIII 396474 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4557,519,0 chrVIII 396631 . A G 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.938;QD=21.30;ReadPosRankSum=2.415;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4601,522,0 chrVIII 396723 . G T 2892 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.95;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2925,324,0 chrVIII 396997 . A G 1202 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=14.48;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1235,141,0 chrVIII 397001 . A G 1174 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.763;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;MQRankSum=-0.630;QD=13.34;ReadPosRankSum=1.693;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1207,141,0 chrVIII 397005 . G T 1241 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=14.26;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1274,144,0 chrVIII 397221 . G T 2616 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.62;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2649,294,0 chrVIII 397520 . G T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.89;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3845,426,0 chrVIII 397787 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=2.995;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.091;QD=23.36;ReadPosRankSum=2.417;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3528,405,0 chrVIII 397848 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.4009;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.88;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3881,429,0 chrVIII 398045 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3345;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.53;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4056,444,0 chrVIII 398182 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.5672;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.68;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2780,309,0 chrVIII 398452 . T C 1975 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.24;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2008,228,0 chrVIII 398985 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=18.66;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1526,168,0 chrVIII 399012 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=18.80;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1575,174,0 chrVIII 399021 . C A 1514 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=17.20;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1547,183,0 chrVIII 399043 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=34.5352;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=15.96;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1246,144,0 chrVIII 399074 . T A 78.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=34;Dels=0.00;FS=12.304;HaplotypeScore=38.3116;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=0;MQRankSum=1.325;QD=2.31;ReadPosRankSum=1.631;SB=-2.752e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:12:111,12,0 chrVIII 399087 . G A 45.97 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=1.92;SB=-8.098e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:9:78,9,0 chrVIII 399099 . T A 181.03 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=8.23;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:214,24,0 chrVIII 399104 . C T 261 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=10.88;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:33:294,33,0 chrVIII 399258 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.15;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1323,150,0 chrVIII 399316 . T C 1388 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.03;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1421,165,0 chrVIII 399409 . A G 2139 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.18;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2172,255,0 chrVIII 399427 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.27;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2330,258,0 chrVIII 399484 . T G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=115;Dels=0.00;FS=3.037;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.658;QD=21.00;ReadPosRankSum=2.363;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2448,288,0 chrVIII 399595 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=3.629;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.351;QD=22.61;ReadPosRankSum=1.684;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3268,366,0 chrVIII 399862 . A G 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=232;Dels=0.00;FS=6.631;HaplotypeScore=13.7712;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.367;QD=21.94;ReadPosRankSum=2.428;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:2,227:232:99:5090,599,0 chrVIII 399901 . T C 5448.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.0479;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.99;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5448,639,0 chrVIII 400069 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.982;QD=21.68;ReadPosRankSum=1.713;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3902,453,0 chrVIII 400290 . T C 3972.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3972,462,0 chrVIII 400335 . G C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3598,420,0 chrVIII 400618 . C T 4647.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.9808;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.00;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4647,525,0 chrVIII 400642 . A T 5024.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.94;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5024,567,0 chrVIII 400960 . A G 3124 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.16;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3157,360,0 chrVIII 401190 . T C 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=137;Dels=0.00;FS=3.027;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.696;QD=20.23;ReadPosRankSum=2.413;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2805,318,0 chrVIII 401205 . T G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=135;Dels=0.00;FS=3.002;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.665;QD=21.17;ReadPosRankSum=2.377;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2891,333,0 chrVIII 401408 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.3698;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.55;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3495,396,0 chrVIII 401729 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=22.1153;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.79;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3068,339,0 chrVIII 401862 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=11.8682;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.25;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2264,249,0 chrVIII 402413 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.45;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2800,321,0 chrVIII 402437 . C G 3007 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.27;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3040,348,0 chrVIII 402478 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=122;Dels=0.00;FS=7.217;HaplotypeScore=14.1167;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.315;QD=21.65;ReadPosRankSum=2.409;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2674,303,0 chrVIII 402653 . T A 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=3.032;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=2.210;QD=22.04;ReadPosRankSum=2.363;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2523,291,0 chrVIII 402730 . G C 2373 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.63;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2406,276,0 chrVIII 402753 . T C 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=125;Dels=0.00;FS=2.932;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.240;QD=20.06;ReadPosRankSum=2.410;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2541,288,0 chrVIII 402891 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.63;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3281,372,0 chrVIII 402986 . T C 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.530;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.550;QD=21.34;ReadPosRankSum=1.706;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2892,339,0 chrVIII 403215 . A G 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=114;Dels=0.00;FS=3.903;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.046;QD=22.18;ReadPosRankSum=1.701;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2562,288,0 chrVIII 403556 . T A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3789,426,0 chrVIII 403646 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=9.306;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.297;QD=22.17;ReadPosRankSum=2.416;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3247,381,0 chrVIII 403805 . C T 2938 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2971,339,0 chrVIII 404246 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2010,228,0 chrVIII 404521 . T C 2712 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2745,312,0 chrVIII 404970 . G C 2779 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.21;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2812,327,0 chrVIII 405293 . G T 2229 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.05;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2262,258,0 chrVIII 405302 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.37;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2338,267,0 chrVIII 405569 . T A 1335 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.63;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1368,153,0 chrVIII 406060 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.47;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2073,234,0 chrVIII 406216 . A C 562 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:66:595,66,0 chrVIII 406254 . G C 275 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.28;SB=-7.800e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:36:308,36,0 chrVIII 406498 . T C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.119;QD=24.36;ReadPosRankSum=1.643;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2859,330,0 chrVIII 406597 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.19;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2607,297,0 chrVIII 406625 . G T 2997 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.98;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3030,336,0 chrVIII 406734 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.87;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3143,345,0 chrVIII 407300 . A G 2833 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.3230;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.63;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2866,327,0 chrVIII 407637 . G T 2654 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.88;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2687,300,0 chrVIII 407923 . G A 4691.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.57;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4691,516,0 chrVIII 408045 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3880,438,0 chrVIII 409404 . C G 2430 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2463,282,0 chrVIII 409664 . A G 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.641;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.421;QD=22.66;ReadPosRankSum=1.701;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2594,300,0 chrVIII 410489 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.567;QD=22.36;ReadPosRankSum=1.614;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3332,387,0 chrVIII 410621 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.47;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4314,486,0 chrVIII 411033 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.74;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2273,261,0 chrVIII 411039 . A C 2206 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.81;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2239,255,0 chrVIII 411599 . T A 2337 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.37;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2370,261,0 chrVIII 411647 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.30;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2196,243,0 chrVIII 412127 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.39;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2787,303,0 chrVIII 412418 . A G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=133;Dels=0.00;FS=5.446;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.568;QD=19.20;ReadPosRankSum=2.932;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2586,291,0 chrVIII 412436 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=0.480;QD=18.07;ReadPosRankSum=1.616;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2183,249,0 chrVIII 412447 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2523;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=16.55;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2267,258,0 chrVIII 412590 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.49;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3382,378,0 chrVIII 412707 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.43;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3273,360,0 chrVIII 412880 . A C 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=133;Dels=0.00;FS=4.385;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=1;MQRankSum=0.013;QD=21.00;ReadPosRankSum=1.652;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2826,330,0 chrVIII 412963 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.16;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3699,408,0 chrVIII 413175 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=1;QD=24.56;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4126,453,0 chrVIII 413239 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=204;Dels=0.00;FS=7.105;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.572;QD=20.78;ReadPosRankSum=2.480;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:5,196:204:99:4239,485,0 chrVIII 413311 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3129,348,0 chrVIII 413574 . T G 194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DP=18;Dels=0.00;FS=9.542;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.542;QD=10.78;ReadPosRankSum=1.542;SB=-2.502e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:27:227,27,0 chrVIII 413635 . A G 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;DP=29;Dels=0.00;FS=12.553;HaplotypeScore=7.2643;MLEAC=1;MLEAF=0.500;MQ=47.62;MQ0=0;MQRankSum=1.379;QD=8.00;ReadPosRankSum=-0.265;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:7,21:29:99:262,0,105 chrVIII 413704 . G T 1034 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1067,120,0 chrVIII 413940 . T C 2792 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.15;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2825,321,0 chrVIII 414321 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.228;QD=22.47;ReadPosRankSum=1.687;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3415,387,0 chrVIII 414435 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.53;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2918,330,0 chrVIII 414714 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.83;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3060,342,0 chrVIII 414877 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3346,372,0 chrVIII 415310 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.33;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3604,411,0 chrVIII 415326 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.27;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3382,381,0 chrVIII 415374 . A G 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.386;QD=21.09;ReadPosRankSum=1.652;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2775,315,0 chrVIII 415914 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.85;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2458,276,0 chrVIII 416109 . A G 2719 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.24;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2752,309,0 chrVIII 416265 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.18;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4592,516,0 chrVIII 416592 . T C 5185.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.69;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5185,597,0 chrVIII 416601 . G C 5036.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.61;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5036,576,0 chrVIII 416745 . T C 4659.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.18;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4659,528,0 chrVIII 416784 . T C 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=254;Dels=0.00;FS=4.569;HaplotypeScore=12.5072;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.399;QD=20.84;ReadPosRankSum=1.718;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:5294,626,0 chrVIII 416857 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.79;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2905,321,0 chrVIII 417002 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.92;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2397,270,0 chrVIII 417054 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.47;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2331,264,0 chrVIII 417114 . A G 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.740;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.054;QD=24.75;ReadPosRankSum=1.696;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2434,276,0 chrVIII 417265 . A G 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.808;QD=21.63;ReadPosRankSum=1.666;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2304,261,0 chrVIII 417266 . G A 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.266;QD=22.44;ReadPosRankSum=1.699;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2412,267,0 chrVIII 417310 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.50;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2247,261,0 chrVIII 417518 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.45;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3399,375,0 chrVIII 417602 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.83;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3744,426,0 chrVIII 417764 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=20.54;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3451,384,0 chrVIII 418214 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.96;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3906,441,0 chrVIII 418349 . T G 3486.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.52;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3486,408,0 chrVIII 418376 . T C 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=154;Dels=0.00;FS=13.160;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-1.278;QD=18.83;ReadPosRankSum=3.402;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:2933,333,0 chrVIII 418380 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.97;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2855,327,0 chrVIII 418718 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.15;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3320,384,0 chrVIII 418992 . C T 2274 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,98:102:99:2307,258,0 chrVIII 419057 . C A 2208 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.49;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2241,249,0 chrVIII 419187 . T G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=99;Dels=0.00;FS=2.966;HaplotypeScore=10.2241;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=2.073;QD=22.27;ReadPosRankSum=2.400;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2238,258,0 chrVIII 419380 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2805,312,0 chrVIII 419449 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2454,276,0 chrVIII 419838 . A G 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=3.794;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.622;QD=21.92;ReadPosRankSum=1.698;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2291,267,0 chrVIII 419952 . A G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.047;QD=21.67;ReadPosRankSum=1.652;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1897,216,0 chrVIII 420099 . T A 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=131;Dels=0.00;FS=2.740;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-2.262;QD=22.82;ReadPosRankSum=2.356;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3023,336,0 chrVIII 420248 . A T 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.679;QD=22.73;ReadPosRankSum=1.677;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2897,324,0 chrVIII 420359 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5870;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.82;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3468,390,0 chrVIII 420455 . T G 3072 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.42;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3105,369,0 chrVIII 420572 . T G 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.269;DP=184;Dels=0.00;FS=0.862;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=50.51;MQ0=0;MQRankSum=-2.346;QD=0.26;ReadPosRankSum=2.803;SB=-1.322e+03 GT:AD:DP:GQ:PL 0/1:23,159:184:77:77,0,436 chrVIII 420823 . A G 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=205;Dels=0.00;FS=6.080;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=2.089;QD=20.80;ReadPosRankSum=2.916;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4264,504,0 chrVIII 420865 . G T 4813.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=16.1804;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.88;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4813,531,0 chrVIII 420997 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=20.93;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3683,408,0 chrVIII 421000 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.81;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3461,408,0 chrVIII 421075 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=3.255;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.198;QD=19.61;ReadPosRankSum=1.715;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3941,450,0 chrVIII 421312 . A G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.307;QD=17.06;ReadPosRankSum=1.658;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2456,282,0 chrVIII 421321 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.29;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2740,306,0 chrVIII 421410 . C A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.32;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4085,453,0 chrVIII 421507 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0701;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.08;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3578,408,0 chrVIII 421639 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6760;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.692;QD=21.04;ReadPosRankSum=1.712;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3598,411,0 chrVIII 421693 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.41;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3909,447,0 chrVIII 421840 . G C 3526.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3526,408,0 chrVIII 422434 . A G 2109 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.20;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2142,249,0 chrVIII 422538 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.7430;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.26;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2306,267,0 chrVIII 422684 . T G 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=110;Dels=0.00;FS=7.549;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.192;QD=16.37;ReadPosRankSum=2.337;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1834,216,0 chrVIII 422786 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.8544;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.35;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3442,378,0 chrVIII 422798 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=150;Dels=0.00;FS=5.872;HaplotypeScore=8.2490;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.361;QD=19.79;ReadPosRankSum=2.912;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:3,145:150:99:3002,345,0 chrVIII 422992 . A G 2524 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.95;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2557,294,0 chrVIII 423870 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.380;QD=21.22;ReadPosRankSum=1.681;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4350,510,0 chrVIII 424191 . A G 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.8707;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.608;QD=20.56;ReadPosRankSum=1.624;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,223:227:99:4667,546,0 chrVIII 424237 . C G 4625.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.02;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4625,543,0 chrVIII 424281 . G T 5109.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.2857;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.81;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5109,561,0 chrVIII 424326 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.3328;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.13;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,168:173:99:3482,402,0 chrVIII 425219 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.26;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3115,351,0 chrVIII 425300 . G T 2290 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3630;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=15.27;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2323,255,0 chrVIII 425301 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3630;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=15.31;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2330,258,0 chrVIII 425423 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.2690;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.72;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3045,333,0 chrVIII 425453 . C A 3108 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.02;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3141,345,0 chrVIII 426350 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.78;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2817,324,0 chrVIII 426443 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=3.067;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.945;QD=22.50;ReadPosRankSum=1.687;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3465,393,0 chrVIII 426665 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=139;Dels=0.00;FS=2.902;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.451;QD=18.01;ReadPosRankSum=2.397;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2537,288,0 chrVIII 427308 . A G 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6983;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.052;QD=20.95;ReadPosRankSum=1.662;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2128,243,0 chrVIII 427439 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.90;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2662,309,0 chrVIII 427901 . G A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3284,357,0 chrVIII 428018 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7566;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.85;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3150,369,0 chrVIII 428044 . T C 3185 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.96;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3218,381,0 chrVIII 428194 . T C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7933;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.704;QD=22.48;ReadPosRankSum=1.705;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2911,336,0 chrVIII 428241 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.01;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3114,351,0 chrVIII 428290 . G T 2978 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.7287;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.26;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3011,342,0 chrVIII 428297 . G A 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.725;DP=142;Dels=0.00;FS=4.416;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.233;QD=18.83;ReadPosRankSum=0.798;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2707,293,0 chrVIII 428411 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=205;Dels=0.00;FS=6.523;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-1.036;QD=19.47;ReadPosRankSum=2.402;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:3991,459,0 chrVIII 428414 . T G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=204;Dels=0.00;FS=3.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-0.426;QD=17.83;ReadPosRankSum=2.413;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,197:204:99:3638,437,0 chrVIII 428574 . A C 4085.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=21.61;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4085,468,0 chrVIII 428607 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=19.72;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3609,402,0 chrVIII 428622 . A T 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=-1.321;QD=19.62;ReadPosRankSum=1.595;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3472,399,0 chrVIII 428623 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=19.16;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3449,396,0 chrVIII 428738 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.92;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4592,504,0 chrVIII 428819 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.67;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3900,435,0 chrVIII 428824 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.01;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3865,429,0 chrVIII 429261 . A G 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.549;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=6.1826;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.071;QD=19.60;ReadPosRankSum=-0.195;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2307,228,0 chrVIII 429323 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4130;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.12;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2975,327,0 chrVIII 429526 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.59;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2428,267,0 chrVIII 429603 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.75;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3104,345,0 chrVIII 430273 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2205,246,0 chrVIII 430583 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.528;QD=21.56;ReadPosRankSum=1.616;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2620,303,0 chrVIII 431645 . G A 5025.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.84;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5025,558,0 chrVIII 431782 . A G 4981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=19.5049;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.535;QD=21.66;ReadPosRankSum=1.702;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4981,573,0 chrVIII 431870 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3333,369,0 chrVIII 431945 . A G 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=144;Dels=0.00;FS=2.580;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=2.294;QD=21.65;ReadPosRankSum=2.951;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3151,357,0 chrVIII 432474 . C T 4536.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.9629;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.13;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4536,498,0 chrVIII 433172 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.47;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3281,360,0 chrVIII 433331 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3086,339,0 chrVIII 433579 . A G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.595;QD=21.01;ReadPosRankSum=1.706;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2849,324,0 chrVIII 433703 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3713,420,0 chrVIII 433873 . A G 2831 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.47;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2864,333,0 chrVIII 434369 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.40;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2922,324,0 chrVIII 434399 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.9022;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.41;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2625,294,0 chrVIII 434504 . A G 2656 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2689,309,0 chrVIII 434588 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.646;HaplotypeScore=16.8987;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.051;QD=20.55;ReadPosRankSum=1.712;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3493,414,0 chrVIII 435146 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.538;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.701;QD=22.60;ReadPosRankSum=1.706;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2994,351,0 chrVIII 435329 . T C 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.116;QD=21.87;ReadPosRankSum=1.706;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2985,345,0 chrVIII 435693 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.59;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3055,342,0 chrVIII 435713 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.00;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3093,342,0 chrVIII 435764 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.17;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2695,297,0 chrVIII 435968 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.90;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2423,270,0 chrVIII 436433 . A G 3292.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.10;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3292,378,0 chrVIII 436457 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.85;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3473,390,0 chrVIII 436613 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=3.508;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.254;QD=21.07;ReadPosRankSum=1.688;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3308,378,0 chrVIII 436654 . A G 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DP=152;Dels=0.00;FS=3.007;HaplotypeScore=21.0066;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.782;QD=20.43;ReadPosRankSum=2.417;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3139,357,0 chrVIII 436695 . G T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.92;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3507,390,0 chrVIII 436780 . T C 2538 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.4752;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.14;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2571,294,0 chrVIII 436859 . T C 2150 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2183,246,0 chrVIII 436939 . G T 1870 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.6721;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=16.55;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1903,216,0 chrVIII 437014 . G T 1736 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.08;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1769,201,0 chrVIII 437680 . G A 4896.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.36;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4896,543,0 chrVIII 437704 . G A 4430.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.15;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4430,498,0 chrVIII 438040 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.242;QD=22.01;ReadPosRankSum=2.414;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3049,351,0 chrVIII 438265 . A G 2021 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2054,246,0 chrVIII 438307 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.13;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2300,252,0 chrVIII 438697 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.60;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2745,306,0 chrVIII 439062 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.56;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3146,348,0 chrVIII 439087 . T A 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=3.155;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.551;QD=22.04;ReadPosRankSum=1.642;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3372,378,0 chrVIII 439148 . G T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.44;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4040,447,0 chrVIII 439617 . G T 2597 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.05;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2630,291,0 chrVIII 439647 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.45;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2478,279,0 chrVIII 439686 . A G 3088 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=20.86;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3121,357,0 chrVIII 439692 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.07;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3043,348,0 chrVIII 439710 . A G 3146 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.17;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3179,363,0 chrVIII 440297 . C T 2619 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.1976;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.38;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2652,297,0 chrVIII 440974 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.90;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3778,423,0 chrVIII 441030 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.77;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3925,450,0 chrVIII 441044 . G A 4228.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.68;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4228,462,0 chrVIII 441251 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.8589;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.08;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3820,429,0 chrVIII 441621 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=4.234;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.633;QD=21.57;ReadPosRankSum=1.691;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3646,420,0 chrVIII 441789 . A T 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.541;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.107;QD=23.01;ReadPosRankSum=1.671;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2633,291,0 chrVIII 441833 . A G 2695 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2728,309,0 chrVIII 442030 . A G 1693 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.24;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1726,198,0 chrVIII 442149 . T C 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=78.0672;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=0.269;QD=16.21;ReadPosRankSum=1.540;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1508,168,0 chrVIII 442176 . T C 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-0.353;QD=14.64;ReadPosRankSum=1.626;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1468,168,0 chrVIII 442747 . A G 4726.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4726,552,0 chrVIII 443428 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.635;QD=21.41;ReadPosRankSum=1.713;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3875,438,0 chrVIII 444367 . A G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=154;Dels=0.00;FS=5.203;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=21.83;ReadPosRankSum=3.402;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3362,381,0 chrVIII 444619 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.5450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.195;QD=22.09;ReadPosRankSum=1.683;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3214,369,0 chrVIII 444856 . G A 6546.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.8139;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.70;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6546,729,0 chrVIII 444916 . C T 7199.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=18.7467;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.07;SB=-3.669e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:7199,790,0 chrVIII 445169 . T C 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.045;DP=191;Dels=0.00;FS=3.016;HaplotypeScore=18.2810;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.338;QD=23.27;ReadPosRankSum=1.041;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4445,480,0 chrVIII 445303 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.56;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2912,330,0 chrVIII 445735 . G A 2553 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2586,285,0 chrVIII 445905 . A C 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=131;Dels=0.00;FS=6.010;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.822;QD=21.34;ReadPosRankSum=2.946;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:2829,327,0 chrVIII 446336 . T G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.77;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3529,417,0 chrVIII 446481 . A T 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.743;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=-1.151;QD=18.59;ReadPosRankSum=1.711;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3026,339,0 chrVIII 446482 . T G 2892 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=18.07;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2925,342,0 chrVIII 446496 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=191;Dels=0.00;FS=2.919;HaplotypeScore=10.7828;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.714;QD=17.94;ReadPosRankSum=2.385;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3426,390,0 chrVIII 446676 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.3988;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.92;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3451,402,0 chrVIII 447248 . C T 4729.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.07;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4729,528,0 chrVIII 447419 . T C 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=189;Dels=0.00;FS=6.007;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.378;QD=23.23;ReadPosRankSum=2.952;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4391,495,0 chrVIII 447550 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.12;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3451,390,0 chrVIII 447718 . T A 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.090;DP=123;Dels=0.00;FS=6.877;HaplotypeScore=16.3766;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=1.390;QD=20.82;ReadPosRankSum=2.410;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2594,288,0 chrVIII 447838 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.75;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3082,339,0 chrVIII 447846 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.18;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2657,300,0 chrVIII 447957 . G C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.32;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3883,453,0 chrVIII 447979 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.45;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3475,387,0 chrVIII 448032 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=16.7966;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.16;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3047,336,0 chrVIII 448835 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.68;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3182,354,0 chrVIII 448924 . T G 3003 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.65;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3036,351,0 chrVIII 448997 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.58;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3217,354,0 chrVIII 449277 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;DP=189;Dels=0.00;FS=6.082;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.586;QD=22.58;ReadPosRankSum=2.350;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4267,483,0 chrVIII 449402 . T G 3203 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3236,378,0 chrVIII 449894 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.70;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3496,387,0 chrVIII 449939 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0756;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.096;QD=22.52;ReadPosRankSum=1.709;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3311,375,0 chrVIII 449957 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.133;QD=20.20;ReadPosRankSum=1.659;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3003,342,0 chrVIII 449977 . T C 3009 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.75;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3042,351,0 chrVIII 450218 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.99;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3267,378,0 chrVIII 450239 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.88;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3082,342,0 chrVIII 450254 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.0198;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.81;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2925,336,0 chrVIII 450290 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=4.288;HaplotypeScore=9.4319;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.555;QD=18.63;ReadPosRankSum=1.709;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2883,336,0 chrVIII 450359 . G A 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.343;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.6545;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.287;QD=23.56;ReadPosRankSum=-0.435;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4405,470,0 chrVIII 450521 . A G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=3.016;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.318;QD=23.24;ReadPosRankSum=2.409;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2822,318,0 chrVIII 450572 . T C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=127;Dels=0.00;FS=8.081;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.673;QD=21.55;ReadPosRankSum=2.411;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2770,312,0 chrVIII 450770 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3755,441,0 chrVIII 451169 . G T 1662 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=20.77;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1695,186,0 chrVIII 451172 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.59;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1660,186,0 chrVIII 451263 . T C 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.6684;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.420;QD=23.05;ReadPosRankSum=1.698;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2407,273,0 chrVIII 452031 . T C 205.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.021;DP=350;Dels=0.00;FS=122.394;HaplotypeScore=26.2241;MLEAC=1;MLEAF=0.500;MQ=50.23;MQ0=18;MQRankSum=-10.373;QD=0.59;ReadPosRankSum=-0.129;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:277,73:350:99:235,0,5152 chrVIII 452050 . G A 308.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;DP=347;Dels=0.00;FS=121.328;HaplotypeScore=24.4783;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=24;MQRankSum=-11.220;QD=0.89;ReadPosRankSum=6.769;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,80:347:99:338,0,4911 chrVIII 452436 . T C 5271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=3.062;HaplotypeScore=12.7869;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.732;QD=20.83;ReadPosRankSum=1.718;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5271,615,0 chrVIII 452903 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.23;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4321,477,0 chrVIII 452923 . C A 4601.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.7168;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.78;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4601,501,0 chrVIII 452955 . A G 4637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=3.911;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.020;QD=21.08;ReadPosRankSum=1.716;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4637,528,0 chrVIII 453105 . T C 4934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=222;Dels=0.00;FS=3.232;HaplotypeScore=9.8341;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.024;QD=22.23;ReadPosRankSum=1.716;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4934,564,0 chrVIII 453234 . T G 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=199;Dels=0.00;FS=3.023;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.654;QD=20.93;ReadPosRankSum=2.400;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4166,494,0 chrVIII 453261 . A G 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.629;QD=19.38;ReadPosRankSum=1.698;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3896,447,0 chrVIII 453360 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.26;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3626,417,0 chrVIII 453472 . A G 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.6383;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.768;QD=15.40;ReadPosRankSum=1.702;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:1835,213,0 chrVIII 453526 . A C 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3355;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.234;QD=20.18;ReadPosRankSum=1.637;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3020,339,0 chrVIII 453557 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=6.254;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.383;QD=20.81;ReadPosRankSum=2.421;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3559,408,0 chrVIII 453574 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=163;Dels=0.00;FS=10.306;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.733;QD=20.56;ReadPosRankSum=2.919;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3351,381,0 chrVIII 453608 . A T 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.617;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=1.079;QD=19.80;ReadPosRankSum=1.682;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2766,306,0 chrVIII 453686 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=92;Dels=0.02;FS=3.261;HaplotypeScore=31.4262;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.720;QD=18.92;ReadPosRankSum=1.654;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1774,201,0 chrVIII 453712 . T C 1989 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.16;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2022,237,0 chrVIII 453738 . A G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.604;QD=21.35;ReadPosRankSum=2.407;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2531,288,0 chrVIII 453771 . A G 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.185;QD=20.21;ReadPosRankSum=1.702;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2337,270,0 chrVIII 453813 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.80;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2238,249,0 chrVIII 453897 . C T 2111 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.68;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2144,243,0 chrVIII 453908 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.72;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2354,261,0 chrVIII 454167 . C G 2758 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.89;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2791,330,0 chrVIII 454213 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.70;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3162,360,0 chrVIII 454283 . T C 2321 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.54;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2354,267,0 chrVIII 454385 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.00;FS=4.304;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.522;QD=23.03;ReadPosRankSum=1.706;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3096,351,0 chrVIII 454436 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.220;QD=24.31;ReadPosRankSum=0.670;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,132:137:99:3330,375,0 chrVIII 454605 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4615,507,0 chrVIII 454715 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.59;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4232,474,0 chrVIII 455012 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=5.006;HaplotypeScore=14.3008;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.729;QD=22.25;ReadPosRankSum=1.641;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2592,300,0 chrVIII 455215 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.50;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3978,459,0 chrVIII 455368 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.2026;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.87;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4642,507,0 chrVIII 455699 . T G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.358;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.027;QD=18.21;ReadPosRankSum=1.599;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2400,276,0 chrVIII 455744 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=22.58;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2946,324,0 chrVIII 455860 . A G 106.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405;DP=102;Dels=0.00;FS=1.428;HaplotypeScore=76.0759;MLEAC=1;MLEAF=0.500;MQ=52.17;MQ0=0;MQRankSum=-0.813;QD=1.04;ReadPosRankSum=-4.042;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:91,10:102:99:136,0,279 chrVIII 455862 . A G 283.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;DP=106;Dels=0.00;FS=1.414;HaplotypeScore=7.2760;MLEAC=1;MLEAF=0.500;MQ=52.37;MQ0=0;MQRankSum=1.924;QD=2.67;ReadPosRankSum=4.416;SB=-5.900e+02 GT:AD:DP:GQ:PL 0/1:10,94:106:53:313,0,53 chrVIII 455976 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=21.31;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1972,216,0 chrVIII 456019 . G C 1635 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.8931;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=20.70;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1668,189,0 chrVIII 456328 . G T 2473 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.48;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2506,273,0 chrVIII 456499 . C A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.6540;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.05;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3964,438,0 chrVIII 456687 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.040;QD=20.79;ReadPosRankSum=2.418;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3255,378,0 chrVIII 456866 . C G 1820 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.57;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1853,213,0 chrVIII 456885 . G T 1693 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=17.64;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1726,192,0 chrVIII 456889 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=17.11;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1710,186,0 chrVIII 456899 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=16.26;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1545,177,0 chrVIII 456941 . A G 1610 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=16.77;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1643,189,0 chrVIII 457019 . G C 2357 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.66;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2390,273,0 chrVIII 457091 . T A 2621 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.7605;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=23.61;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2654,300,0 chrVIII 457132 . C G 2340 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.17;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2373,270,0 chrVIII 457249 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.24;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3124,345,0 chrVIII 457364 . A G 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=190;Dels=0.00;FS=6.698;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.120;QD=23.08;ReadPosRankSum=1.677;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4385,501,0 chrVIII 457544 . T C 4968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=266;Dels=0.00;FS=7.660;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-0.921;QD=18.68;ReadPosRankSum=2.394;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:3,263:266:99:4968,564,0 chrVIII 457546 . A G 4989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=267;Dels=0.00;FS=2.850;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=0.401;QD=18.69;ReadPosRankSum=2.394;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:2,265:267:99:4989,573,0 chrVIII 457565 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=3.5422;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=16.95;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:4255,474,0 chrVIII 457580 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=15.77;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:3738,414,0 chrVIII 457736 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=2.885;HaplotypeScore=9.5254;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.331;QD=19.66;ReadPosRankSum=2.424;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3736,438,0 chrVIII 457776 . A G 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=3.516;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.444;QD=20.34;ReadPosRankSum=1.714;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3905,464,0 chrVIII 458008 . C A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.54;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3673,408,0 chrVIII 458084 . T A 2993 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.44;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3026,336,0 chrVIII 458130 . T A 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=142;Dels=0.00;FS=6.691;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.774;QD=20.68;ReadPosRankSum=2.311;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2970,330,0 chrVIII 458277 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.965;QD=22.09;ReadPosRankSum=1.679;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2971,342,0 chrVIII 458341 . C G 3194 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.14;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3227,381,0 chrVIII 458489 . G T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.5061;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.66;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4211,474,0 chrVIII 458616 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.8367;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.39;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4098,471,0 chrVIII 458768 . A T 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=136;Dels=0.00;FS=12.141;HaplotypeScore=9.9948;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.486;QD=14.50;ReadPosRankSum=3.001;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:8,128:136:99:2005,225,0 chrVIII 458896 . T C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.01;FS=3.424;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.367;QD=20.83;ReadPosRankSum=1.706;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2804,321,0 chrVIII 458916 . G A 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.330;DP=127;Dels=0.00;FS=3.222;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.522;QD=20.75;ReadPosRankSum=-0.907;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2668,282,0 chrVIII 458966 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.44;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2413,261,0 chrVIII 459010 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.12;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2422,267,0 chrVIII 459361 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.29;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3983,438,0 chrVIII 459500 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.28;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4447,492,0 chrVIII 459529 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.24;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3696,402,0 chrVIII 459540 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=3.381;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.449;QD=18.75;ReadPosRankSum=1.667;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3051,354,0 chrVIII 459589 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.42;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3613,411,0 chrVIII 459844 . T C 5804.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.15;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,258:262:99:5804,672,0 chrVIII 459884 . C G 3505.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=16.23;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:3505,399,0 chrVIII 459885 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=16.52;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:3551,402,0 chrVIII 460285 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=181;Dels=0.00;FS=3.468;HaplotypeScore=8.8622;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.481;QD=20.34;ReadPosRankSum=1.694;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3681,432,0 chrVIII 460606 . T C 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.272;QD=22.94;ReadPosRankSum=1.674;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4107,486,0 chrVIII 460708 . C T 5325.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.32;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5325,585,0 chrVIII 460798 . G C 2807 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.36;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2840,324,0 chrVIII 460801 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.94;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2779,312,0 chrVIII 461318 . C T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.6756;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.37;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4227,462,0 chrVIII 461577 . G T 2111 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.37;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2144,237,0 chrVIII 461593 . T A 1749 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=16.35;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1782,198,0 chrVIII 461705 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1224;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.56;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1111,126,0 chrVIII 461709 . C A 1027 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=23.88;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1060,117,0 chrVIII 461762 . C A 236 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:26:33:269,33,0 chrVIII 462176 . T C 5102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.602;QD=22.09;ReadPosRankSum=-0.542;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5102,594,0 chrVIII 462222 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.4940;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4290,492,0 chrVIII 462297 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=4.251;HaplotypeScore=9.7155;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.144;QD=22.93;ReadPosRankSum=1.711;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3806,432,0 chrVIII 462419 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.9425;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.72;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3191,354,0 chrVIII 462588 . A G 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=134;Dels=0.00;FS=8.107;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.440;QD=22.82;ReadPosRankSum=2.395;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3091,354,0 chrVIII 462676 . G T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3268;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.19;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4175,462,0 chrVIII 462717 . A G 5387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=239;Dels=0.00;FS=9.766;HaplotypeScore=16.8510;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-2.388;QD=22.54;ReadPosRankSum=2.937;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:3,235:239:99:5387,615,0 chrVIII 462825 . T G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.318;QD=22.21;ReadPosRankSum=2.159;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3398,384,0 chrVIII 463320 . A G 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.9335;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.365;QD=22.34;ReadPosRankSum=1.703;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5272,606,0 chrVIII 463432 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1781;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.696;QD=21.09;ReadPosRankSum=1.677;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4008,471,0 chrVIII 463473 . T A 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=193;Dels=0.00;FS=3.665;HaplotypeScore=11.3704;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=-0.332;QD=22.52;ReadPosRankSum=1.642;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4346,483,0 chrVIII 463665 . G C 1805 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1838,210,0 chrVIII 463706 . A G 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.724;QD=18.24;ReadPosRankSum=1.669;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1036,120,0 chrVIII 463767 . T G 287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.973;DP=27;Dels=0.00;FS=2.944;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.241;QD=10.63;ReadPosRankSum=2.261;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:2,24:27:36:320,36,0 chrVIII 463786 . G A 454 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=15.66;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:54:487,54,0 chrVIII 463854 . A T 1069 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.82;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1102,123,0 chrVIII 464017 . C T 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.678;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=2.179;QD=21.08;ReadPosRankSum=1.303;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2520,240,0 chrVIII 464071 . C T 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.445;DP=141;Dels=0.00;FS=2.905;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=2.014;QD=21.84;ReadPosRankSum=-0.828;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3112,297,0 chrVIII 464132 . T A 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=-0.823;QD=19.94;ReadPosRankSum=2.392;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2565,294,0 chrVIII 464133 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.385;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;MQRankSum=0.110;QD=19.74;ReadPosRankSum=1.677;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2560,294,0 chrVIII 464156 . T C 2245 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=18.71;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2278,270,0 chrVIII 464175 . T A 2298 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.53;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2331,258,0 chrVIII 464198 . A G 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.657;QD=16.84;ReadPosRankSum=2.008;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:4,136:142:99:2424,285,0 chrVIII 464335 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=22.04;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2435,270,0 chrVIII 464377 . A G 2188 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=18.39;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2221,261,0 chrVIII 464383 . G C 2074 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=16.73;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2107,246,0 chrVIII 464505 . A G 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;MQRankSum=-0.366;QD=18.05;ReadPosRankSum=1.699;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1910,219,0 chrVIII 464525 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=32.6726;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=16.45;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1464,162,0 chrVIII 464561 . C A 1732 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=11.47;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:1765,198,0 chrVIII 464600 . T G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=7.325;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=1.127;QD=19.10;ReadPosRankSum=2.377;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3261,378,0 chrVIII 464718 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=23.67;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3290,375,0 chrVIII 464855 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=21.61;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2453,279,0 chrVIII 464897 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;MQRankSum=-2.240;QD=18.54;ReadPosRankSum=2.397;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1794,201,0 chrVIII 464904 . A G 1723 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=0;QD=18.14;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1756,204,0 chrVIII 464913 . G A 1533 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=17.83;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1566,177,0 chrVIII 464914 . A T 1533 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=17.83;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1566,177,0 chrVIII 464915 . A G 1479 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=17.20;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1512,177,0 chrVIII 464926 . A T 1320 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=-0.236;QD=15.00;ReadPosRankSum=1.693;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1353,153,0 chrVIII 464929 . T C 1213 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=15.75;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1246,141,0 chrVIII 464930 . T C 1202 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=15.61;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1235,141,0 chrVIII 464938 . T A 991 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=12.09;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1024,114,0 chrVIII 464946 . T A 920 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=11.79;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:953,105,0 chrVIII 464955 . C T 798 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=57.5384;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.64;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:96:831,96,0 chrVIII 464968 . A G 687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=2.595;HaplotypeScore=71.2039;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.308;QD=8.18;ReadPosRankSum=0.249;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:81:720,81,0 chrVIII 464977 . G A 635 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.47;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:75:668,75,0 chrVIII 464982 . G C 583 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.62;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:72:616,72,0 chrVIII 464985 . T C 548 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.85;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:66:581,66,0 chrVIII 464986 . C T 535 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.69;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:66:568,66,0 chrVIII 464993 . G A 449 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.41;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:54:482,54,0 chrVIII 464998 . A G 397 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.680;QD=5.03;ReadPosRankSum=1.688;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:48:430,48,0 chrVIII 465003 . A T 399 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.39;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:48:432,48,0 chrVIII 465009 . T A 345 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.31;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:42:378,42,0 chrVIII 465021 . C T 353 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.69;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:42:386,42,0 chrVIII 465027 . G A 350 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.14;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:42:383,42,0 chrVIII 465031 . C T 313 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.91;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:39:346,39,0 chrVIII 465192 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=0.34;SB=-6.777e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:6:49,6,0 chrVIII 465197 . C G 122.13 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=1.70;SB=-1.741e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:18:155,18,0 chrVIII 465244 . A G 2370 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=15.59;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2403,273,0 chrVIII 465300 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=0.247;QD=23.35;ReadPosRankSum=1.711;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3922,453,0 chrVIII 465360 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=172;Dels=0.00;FS=5.327;HaplotypeScore=13.8102;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;MQRankSum=-1.735;QD=21.65;ReadPosRankSum=2.900;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3723,423,0 chrVIII 465397 . A G 4075.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=21.79;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4075,459,0 chrVIII 465417 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=20.39;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3955,453,0 chrVIII 465470 . A G 4469.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.69;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4469,513,0 chrVIII 465483 . C G 4342.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.1769;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.50;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4342,504,0 chrVIII 465597 . A G 2836 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.0272;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.91;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2869,336,0 chrVIII 465607 . C G 2686 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.19;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2719,312,0 chrVIII 465699 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=0;QD=18.75;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2020,225,0 chrVIII 465708 . T A 2020 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=18.88;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2053,231,0 chrVIII 465731 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=19.05;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1843,210,0 chrVIII 465736 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;QD=18.88;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1751,198,0 chrVIII 465769 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=16.66;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1249,150,0 chrVIII 465841 . T C 290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;MQRankSum=0.039;QD=9.06;ReadPosRankSum=2.297;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:39:323,39,0 chrVIII 465859 . A T 543 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=10.65;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:66:576,66,0 chrVIII 465884 . A G 436 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=7.93;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:57:469,57,0 chrVIII 465885 . A T 455 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=8.27;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:57:488,57,0 chrVIII 465908 . C T 551 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=7.65;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:72:584,72,0 chrVIII 465909 . A G 572 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=7.94;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:75:605,75,0 chrVIII 465923 . T C 545 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;MQRankSum=-1.687;QD=7.08;ReadPosRankSum=1.687;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:72:578,72,0 chrVIII 465932 . A G 364 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;QD=5.13;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:51:397,51,0 chrVIII 465933 . A C 366 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=4.82;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:76:51:399,51,0 chrVIII 465996 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=17.98;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2370,273,0 chrVIII 466004 . C A 2526 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.30;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2559,294,0 chrVIII 466015 . T A 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.231;QD=19.02;ReadPosRankSum=1.709;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2886,342,0 chrVIII 466058 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=20.81;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3517,399,0 chrVIII 466092 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=23.62;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3425,384,0 chrVIII 466108 . G T 2795 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=22.01;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2828,327,0 chrVIII 466143 . A C 2275 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=19.28;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2308,284,0 chrVIII 466153 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=19.03;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2183,260,0 chrVIII 466163 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=20.09;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2504,299,0 chrVIII 466191 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=21.73;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3498,399,0 chrVIII 466250 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=22.34;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3865,435,0 chrVIII 466269 . T A 3056 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=18.98;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3089,351,0 chrVIII 466305 . A T 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=119;Dels=0.00;FS=2.912;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;MQRankSum=-1.685;QD=14.54;ReadPosRankSum=2.408;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:1763,213,0 chrVIII 466322 . G A 1113 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=11.97;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1146,141,0 chrVIII 466324 . A G 1089 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=0;QD=11.97;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1122,141,0 chrVIII 466334 . A G 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.405;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;MQRankSum=-0.377;QD=10.60;ReadPosRankSum=1.694;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1008,126,0 chrVIII 466339 . C T 831 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=9.44;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:864,108,0 chrVIII 466355 . T C 769 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=9.15;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:802,99,0 chrVIII 466361 . A G 793 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=9.55;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:826,105,0 chrVIII 466379 . G C 930 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=11.34;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:963,117,0 chrVIII 466381 . A C 959 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;QD=11.55;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:992,117,0 chrVIII 466403 . T C 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=95;Dels=0.00;FS=6.160;HaplotypeScore=8.8991;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=-1.373;QD=13.80;ReadPosRankSum=2.926;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1344,156,0 chrVIII 466475 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=86.7040;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=18.21;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1981,234,0 chrVIII 466485 . A C 1688 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=80.9396;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=19.63;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1721,198,0 chrVIII 466531 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=18.65;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1618,186,0 chrVIII 466551 . A T 1506 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=21.51;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1539,177,0 chrVIII 466650 . C A 1467 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=18.57;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1500,171,0 chrVIII 466657 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=17.16;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1320,150,0 chrVIII 466663 . G C 1141 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=15.42;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1174,141,0 chrVIII 466717 . C G 1047 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=13.78;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1080,129,0 chrVIII 466727 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;QD=13.28;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1162,132,0 chrVIII 466770 . T G 656 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;QD=11.31;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:78:689,78,0 chrVIII 466785 . C T 427 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=8.71;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:54:460,54,0 chrVIII 466793 . A G 318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.938;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;MQRankSum=1.266;QD=6.12;ReadPosRankSum=1.666;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:42:351,42,0 chrVIII 466809 . T A 498 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=9.96;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:60:531,60,0 chrVIII 466811 . T C 578 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;MQRankSum=-1.393;QD=11.33;ReadPosRankSum=1.664;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:72:611,72,0 chrVIII 466816 . G A 590 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=11.80;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:72:623,72,0 chrVIII 466818 . G C 617 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=12.34;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:72:650,72,0 chrVIII 466828 . T A 614 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=9.90;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:72:647,72,0 chrVIII 466834 . C A 615 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=9.92;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:72:648,72,0 chrVIII 466835 . A C 581 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=9.37;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:72:614,72,0 chrVIII 466847 . A C 575 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=9.27;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:72:608,72,0 chrVIII 466854 . A C 586 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=9.45;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:72:619,72,0 chrVIII 466855 . A C 581 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=9.37;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:72:614,72,0 chrVIII 466858 . A T 544 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=8.63;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:72:577,72,0 chrVIII 466922 . A G 969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.416;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=-0.479;QD=10.31;ReadPosRankSum=1.695;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1002,114,0 chrVIII 466929 . G A 1028 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=10.94;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1061,117,0 chrVIII 466958 . T C 1514 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=18.24;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1547,177,0 chrVIII 467068 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=21.88;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2090,231,0 chrVIII 467260 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;QD=24.44;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1548,174,0 chrVIII 467702 . C T 5813.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.4956;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.82;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5813,639,0 chrVIII 467835 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3336,366,0 chrVIII 467986 . G T 2595 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2628,285,0 chrVIII 468144 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.20;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3878,423,0 chrVIII 468239 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2239,252,0 chrVIII 468422 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.387;QD=22.37;ReadPosRankSum=1.675;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2762,321,0 chrVIII 468473 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2506,285,0 chrVIII 468734 . T G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.524;QD=21.09;ReadPosRankSum=1.628;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2163,252,0 chrVIII 468905 . G C 2602 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.24;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2635,303,0 chrVIII 468936 . T C 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.577;QD=22.76;ReadPosRankSum=1.703;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2764,312,0 chrVIII 469005 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=121;Dels=0.00;FS=6.820;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.174;QD=21.40;ReadPosRankSum=2.388;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2622,297,0 chrVIII 469095 . T C 3193 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.81;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3226,366,0 chrVIII 469169 . T C 2485 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.7914;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.61;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2518,297,0 chrVIII 469438 . C G 2227 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.9847;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.21;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2260,261,0 chrVIII 469510 . T A 2734 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2767,306,0 chrVIII 469661 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2365,267,0 chrVIII 469819 . T C 2580 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.67;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2613,300,0 chrVIII 470052 . A G 2795 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.67;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2828,321,0 chrVIII 470234 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.39;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3572,396,0 chrVIII 470249 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.12;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3075,339,0 chrVIII 470276 . C G 2758 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.46;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2791,318,0 chrVIII 470287 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.55;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2912,330,0 chrVIII 470706 . C T 4857.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=15.9557;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.26;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:4857,540,0 chrVIII 470753 . G T 4495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=29.2514;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.719;QD=16.96;ReadPosRankSum=0.511;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,260:265:99:4495,501,0 chrVIII 470864 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.8991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3127,351,0 chrVIII 471244 . T C 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.722;DP=220;Dels=0.00;FS=17.968;HaplotypeScore=24.8537;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.731;QD=20.52;ReadPosRankSum=3.801;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:5,212:220:99:4515,516,0 chrVIII 471289 . A G 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.265;DP=214;Dels=0.00;FS=14.450;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.455;QD=22.43;ReadPosRankSum=3.395;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:4,210:214:99:4800,543,0 chrVIII 471466 . C T 4899.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4899,549,0 chrVIII 471607 . C A 4314.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4314,477,0 chrVIII 472204 . C T 5375.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.0522;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.07;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5375,591,0 chrVIII 472720 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.77;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1554,177,0 chrVIII 472790 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.59;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2443,267,0 chrVIII 472879 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=113;Dels=0.00;FS=5.773;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.491;QD=21.58;ReadPosRankSum=2.527;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2471,294,0 chrVIII 472956 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.46;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2616,300,0 chrVIII 473098 . A G 2365 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.10;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2398,270,0 chrVIII 473101 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.92;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2269,249,0 chrVIII 473284 . C A 2188 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.24;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2221,243,0 chrVIII 473401 . C A 2430 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.06;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2463,276,0 chrVIII 473628 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.51;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3573,408,0 chrVIII 473685 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.17;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4012,444,0 chrVIII 473884 . A G 3077 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8441;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.31;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3110,360,0 chrVIII 474166 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.77;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3270,360,0 chrVIII 474210 . T C 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.417;QD=19.87;ReadPosRankSum=1.680;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2656,303,0 chrVIII 474220 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1922;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.86;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2522,276,0 chrVIII 474449 . C G 1427 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.02;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1460,165,0 chrVIII 474485 . C A 1001 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.85;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1034,117,0 chrVIII 474521 . T A 385 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.74;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:48:418,48,0 chrVIII 474566 . C T 229 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;QD=19.08;SB=-1.319e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:262,30,0 chrVIII 474612 . G A 233 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.42;SB=-2.600e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:266,30,0 chrVIII 474819 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.52;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1750,195,0 chrVIII 474959 . G T 2846 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.52;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2879,324,0 chrVIII 475344 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.1207;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.74;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1813,204,0 chrVIII 475798 . C T 934 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:967,111,0 chrVIII 475799 . T A 959 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:992,111,0 chrVIII 475984 . A G 359 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=5.52;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,63:65:45:392,45,0 chrVIII 476134 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=24.02;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2795,312,0 chrVIII 476842 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.12;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3360,372,0 chrVIII 476968 . A C 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.544;QD=20.96;ReadPosRankSum=1.683;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3010,354,0 chrVIII 477127 . A T 2885 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.54;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2918,327,0 chrVIII 477189 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.33;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2869,315,0 chrVIII 477370 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.50;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2575,288,0 chrVIII 477400 . A G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=108;Dels=0.00;FS=6.736;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.652;QD=22.62;ReadPosRankSum=2.404;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2476,285,0 chrVIII 477478 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.66;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2394,264,0 chrVIII 477509 . A G 1977 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.57;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2010,225,0 chrVIII 477510 . A G 1980 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.22;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2013,225,0 chrVIII 477596 . T C 2212 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.07;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2245,258,0 chrVIII 477793 . C A 2317 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.72;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2350,258,0 chrVIII 477858 . T C 2575 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2608,297,0 chrVIII 477970 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.4561;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.72;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3236,369,0 chrVIII 478314 . G T 2422 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5984;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.06;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2455,273,0 chrVIII 478429 . A T 1854 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.89;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1887,207,0 chrVIII 478552 . A G 2857 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.98;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2890,345,0 chrVIII 478590 . A G 2510 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.41;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2543,288,0 chrVIII 478714 . C T 2866 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=20.92;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2899,330,0 chrVIII 478717 . G A 2856 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.64;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2889,327,0 chrVIII 478719 . C T 2801 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.45;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2834,324,0 chrVIII 478873 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.86;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2813,318,0 chrVIII 478875 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.88;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2894,318,0 chrVIII 478935 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.51;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1767,198,0 chrVIII 478978 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.82;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2848,324,0 chrVIII 479191 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.01;FS=7.202;HaplotypeScore=17.7725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.497;QD=22.79;ReadPosRankSum=2.416;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3373,384,0 chrVIII 479320 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.053;QD=20.42;ReadPosRankSum=1.709;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3096,351,0 chrVIII 479332 . A G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.920;QD=20.77;ReadPosRankSum=1.684;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3045,357,0 chrVIII 480039 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.89;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3846,438,0 chrVIII 480214 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.561;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.567;QD=20.72;ReadPosRankSum=1.711;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3481,411,0 chrVIII 480301 . T G 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.480;DP=166;Dels=0.00;FS=3.170;HaplotypeScore=10.5968;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.000;QD=22.17;ReadPosRankSum=1.669;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3681,403,0 chrVIII 480480 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.02;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3832,432,0 chrVIII 480712 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3045,336,0 chrVIII 481190 . G T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.8740;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.39;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4117,459,0 chrVIII 481335 . T C 3901.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=198;Dels=0.00;FS=3.030;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-0.841;QD=19.70;ReadPosRankSum=2.412;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:3901,453,0 chrVIII 481342 . C T 3720.01 SnpCluster AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=19.89;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3720,420,0 chrVIII 481344 . A G 3746.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=3.405;HaplotypeScore=3.2753;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.377;QD=20.36;ReadPosRankSum=1.713;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3746,423,0 chrVIII 481410 . G C 3910.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.5943;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.15;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3910,450,0 chrVIII 481494 . G C 3616.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5869;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.32;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3616,414,0 chrVIII 481687 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.48;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2398,270,0 chrVIII 481690 . C A 2379 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.30;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2412,264,0 chrVIII 481932 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.15;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3426,390,0 chrVIII 482056 . C A 2645 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=16.6495;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=22.04;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2678,294,0 chrVIII 482206 . C G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.68;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3651,432,0 chrVIII 482359 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.00;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2739,306,0 chrVIII 482460 . C A 2659 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.16;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2692,309,0 chrVIII 482489 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.56;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2909,327,0 chrVIII 482490 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.99;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2971,333,0 chrVIII 482724 . C T 5025.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=18.1027;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.20;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5025,585,0 chrVIII 482776 . A G 5918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=266;Dels=0.00;FS=3.249;HaplotypeScore=18.7388;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.468;QD=22.25;ReadPosRankSum=1.679;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:1,261:266:99:5918,669,0 chrVIII 482818 . G A 5634.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.54;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5634,615,0 chrVIII 482830 . A G 5224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=248;Dels=0.00;FS=9.801;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.930;QD=21.06;ReadPosRankSum=2.947;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:3,242:248:99:5224,614,0 chrVIII 482961 . C T 5365.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.6454;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.08;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5365,585,0 chrVIII 483130 . A G 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=0.501;QD=19.89;ReadPosRankSum=1.699;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4197,483,0 chrVIII 483138 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=20.58;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4343,483,0 chrVIII 483157 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=193;Dels=0.00;FS=2.927;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.876;QD=18.41;ReadPosRankSum=2.386;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:3553,405,0 chrVIII 483160 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=0.540;QD=18.20;ReadPosRankSum=1.713;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3404,396,0 chrVIII 483262 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.40;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,151:158:99:3098,351,0 chrVIII 483295 . A G 2606 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.30;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2639,297,0 chrVIII 483328 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.58;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2814,312,0 chrVIII 483396 . A C 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.00;FS=4.080;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.294;QD=22.26;ReadPosRankSum=1.712;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3918,450,0 chrVIII 483435 . T C 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.6477;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.441;QD=22.85;ReadPosRankSum=2.964;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:4501,519,0 chrVIII 483502 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1026;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-2.058;QD=20.91;ReadPosRankSum=2.396;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:3848,435,0 chrVIII 483796 . T C 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=262;Dels=0.00;FS=15.035;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.442;QD=20.12;ReadPosRankSum=2.958;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:3,258:262:99:5272,606,0 chrVIII 483821 . G A 5448.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=9.8381;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.56;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5448,603,0 chrVIII 484007 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.38;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4554,510,0 chrVIII 484023 . G C 4382.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.74;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:4382,516,0 chrVIII 484057 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.6878;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.04;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4915,549,0 chrVIII 484090 . T C 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.630;QD=20.25;ReadPosRankSum=1.715;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4010,465,0 chrVIII 484407 . T A 5362.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.1421;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.07;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5362,597,0 chrVIII 485261 . A G 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=7.090;HaplotypeScore=15.1661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.430;QD=22.68;ReadPosRankSum=2.392;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4808,546,0 chrVIII 485522 . T C 5316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.626;QD=23.21;ReadPosRankSum=1.717;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5316,609,0 chrVIII 485700 . G A 4163.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.39;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4163,465,0 chrVIII 485807 . A T 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.093;DP=167;Dels=0.00;FS=2.004;HaplotypeScore=3.9182;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.141;QD=18.71;ReadPosRankSum=2.810;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3157,339,0 chrVIII 485810 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=12.9208;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.86;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3107,342,0 chrVIII 485864 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.11;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2748,303,0 chrVIII 485969 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.0922;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.24;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3053,339,0 chrVIII 485972 . T C 2913 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.29;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2946,333,0 chrVIII 486077 . T C 2801 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.22;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2834,324,0 chrVIII 486211 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4894;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.64;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3916,432,0 chrVIII 486425 . T C 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=227;Dels=0.00;FS=2.925;HaplotypeScore=19.9528;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.256;QD=21.04;ReadPosRankSum=2.417;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:4776,540,0 chrVIII 486462 . C A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.80;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,207:212:99:4198,483,0 chrVIII 486482 . C T 4724.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.90;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4724,516,0 chrVIII 486568 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=240;Dels=0.00;FS=9.433;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=1;MQRankSum=-1.108;QD=17.54;ReadPosRankSum=2.190;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,235:240:99:4210,480,0 chrVIII 486569 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=1;QD=18.29;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:4316,477,0 chrVIII 486819 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.17;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1929,219,0 chrVIII 486921 . G A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.2068;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.03;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4581,501,0 chrVIII 487008 . A T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.77;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3374,384,0 chrVIII 487029 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.51;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3764,438,0 chrVIII 487085 . G C 4850.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.0963;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.18;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4850,546,0 chrVIII 487114 . G T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.91;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4558,504,0 chrVIII 487338 . A G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=172;Dels=0.00;FS=11.862;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.686;QD=23.29;ReadPosRankSum=2.959;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:4006,456,0 chrVIII 487560 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.29;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2447,276,0 chrVIII 487640 . C G 1544 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.60;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1577,183,0 chrVIII 487644 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=17.73;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1558,174,0 chrVIII 488330 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.41;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1377,156,0 chrVIII 488425 . C A 1981 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.53;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2014,225,0 chrVIII 488458 . A T 1607 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=18.69;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1640,192,0 chrVIII 488465 . A C 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=3.222;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.691;QD=18.68;ReadPosRankSum=1.608;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1602,189,0 chrVIII 488588 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.69;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3041,351,0 chrVIII 489445 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=3.033;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.915;QD=22.89;ReadPosRankSum=2.419;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3685,417,0 chrVIII 489505 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.77;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3266,363,0 chrVIII 489755 . C T 5066.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.72;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5066,555,0 chrVIII 489898 . G A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.21;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4385,489,0 chrVIII 490087 . C G 3156 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.36;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3189,378,0 chrVIII 490111 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.49;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3711,417,0 chrVIII 490863 . C T 2220 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.13;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2253,252,0 chrVIII 491037 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.808;QD=17.24;ReadPosRankSum=1.711;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2877,330,0 chrVIII 491043 . A G 3032 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.13;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3065,354,0 chrVIII 491125 . T A 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.6938;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-1.679;QD=18.50;ReadPosRankSum=1.609;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3645,423,0 chrVIII 491126 . G T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.6938;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.49;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:3839,420,0 chrVIII 491154 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.37;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4073,447,0 chrVIII 491229 . A G 4645.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.5235;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.88;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4645,534,0 chrVIII 491290 . A G 5300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.7488;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.799;QD=22.55;ReadPosRankSum=1.702;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5300,621,0 chrVIII 491435 . G A 4618.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.70;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4618,516,0 chrVIII 491874 . T C 2923 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=60.58;MQ0=0;QD=22.48;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2956,339,0 chrVIII 492224 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=9.612;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.161;QD=21.74;ReadPosRankSum=2.391;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2816,330,0 chrVIII 492468 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=116;Dels=0.00;FS=5.315;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.626;QD=22.43;ReadPosRankSum=2.940;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2635,300,0 chrVIII 492713 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.23;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2071,234,0 chrVIII 492719 . T G 1946 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.92;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1979,228,0 chrVIII 492745 . A G 1598 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.25;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1631,186,0 chrVIII 493139 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.89;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2613,300,0 chrVIII 493409 . G A 2952 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2985,339,0 chrVIII 493693 . G A 297 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.21;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:36:330,36,0 chrVIII 493815 . G A 353 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=16.81;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:45:386,45,0 chrVIII 493855 . G C 745 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.62;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:40:87:778,87,0 chrVIII 493856 . G A 730 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.80;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:87:763,87,0 chrVIII 493985 . A G 1119 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.31;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,46:48:99:1152,135,0 chrVIII 494024 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9852;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.99;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2032,228,0 chrVIII 494116 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.45;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2495,276,0 chrVIII 494183 . A G 2528 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.07;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2561,291,0 chrVIII 494213 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=18.61;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2731,303,0 chrVIII 494225 . A G 2646 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.9566;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.76;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2679,318,0 chrVIII 494255 . T G 2994 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=17.93;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3027,345,0 chrVIII 494426 . A G 4567.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.72;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4567,534,0 chrVIII 494510 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4781;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.164;QD=20.81;ReadPosRankSum=0.900;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3767,417,0 chrVIII 494516 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.6458;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.12;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3675,408,0 chrVIII 494552 . G T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.94;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3861,441,0 chrVIII 494690 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.52;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2809,321,0 chrVIII 494825 . A C 2041 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2074,237,0 chrVIII 494966 . A G 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.304;QD=21.13;ReadPosRankSum=1.696;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2083,234,0 chrVIII 494980 . A G 2098 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.07;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2131,252,0 chrVIII 495164 . T C 2589 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.94;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2622,297,0 chrVIII 495494 . A G 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.7933;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.408;QD=21.85;ReadPosRankSum=1.664;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2305,270,0 chrVIII 495688 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.096;QD=21.78;ReadPosRankSum=2.240;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2865,327,0 chrVIII 495926 . C T 4220.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.06;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4220,486,0 chrVIII 496013 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.08;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3393,378,0 chrVIII 496308 . T A 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=95;Dels=0.00;FS=3.056;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.550;QD=21.31;ReadPosRankSum=1.659;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2057,228,0 chrVIII 496531 . G A 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6343;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.257;QD=22.99;ReadPosRankSum=1.648;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2907,321,0 chrVIII 496975 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=150;Dels=0.00;FS=3.188;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.178;QD=21.43;ReadPosRankSum=1.686;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3248,378,0 chrVIII 497183 . T C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=104;Dels=0.00;FS=5.035;HaplotypeScore=11.0625;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.460;QD=17.45;ReadPosRankSum=1.698;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,101:104:99:1848,210,0 chrVIII 497211 . G T 2365 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.57;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2398,273,0 chrVIII 497287 . A T 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=143;Dels=0.00;FS=2.582;HaplotypeScore=123.5352;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.458;QD=20.52;ReadPosRankSum=2.951;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2967,327,0 chrVIII 497336 . G T 2637 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.10;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2670,294,0 chrVIII 497380 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.854;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.299;QD=23.26;ReadPosRankSum=1.656;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3196,369,0 chrVIII 497537 . G T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.53;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3836,432,0 chrVIII 497907 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.609;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.243;QD=21.05;ReadPosRankSum=1.711;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3431,396,0 chrVIII 498021 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.17;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3388,396,0 chrVIII 498290 . C A 6377.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.62;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6377,702,0 chrVIII 498566 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=172;Dels=0.00;FS=2.835;HaplotypeScore=11.6726;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.740;QD=18.12;ReadPosRankSum=2.406;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3149,363,0 chrVIII 498745 . G A 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.1320;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.483;QD=23.91;ReadPosRankSum=1.656;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4327,468,0 chrVIII 498868 . A T 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.732;QD=19.90;ReadPosRankSum=1.713;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3662,411,0 chrVIII 499040 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=161;Dels=0.00;FS=10.587;HaplotypeScore=146.3725;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-2.744;QD=18.17;ReadPosRankSum=2.956;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:2958,336,0 chrVIII 499430 . A G 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=244;Dels=0.00;FS=2.682;HaplotypeScore=9.5430;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.850;QD=21.37;ReadPosRankSum=2.429;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5215,594,0 chrVIII 499459 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=220;Dels=0.00;FS=7.929;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.017;QD=20.79;ReadPosRankSum=3.766;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:5,214:220:99:4574,519,0 chrVIII 499553 . G A 4925.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.91;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4925,549,0 chrVIII 499849 . G A 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.200;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.0827;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.064;QD=21.03;ReadPosRankSum=-0.076;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4794,531,0 chrVIII 499853 . T C 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.120;DP=229;Dels=0.00;FS=6.919;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.173;QD=19.99;ReadPosRankSum=2.155;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:3,224:229:99:4577,513,0 chrVIII 500211 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.626;QD=18.93;ReadPosRankSum=2.367;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3426,384,0 chrVIII 500223 . T C 3364.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.11;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3364,387,0 chrVIII 500294 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.42;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2953,330,0 chrVIII 500301 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.86;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3016,333,0 chrVIII 500352 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.51;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2863,318,0 chrVIII 500412 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=4.513;HaplotypeScore=7.9183;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.106;QD=22.95;ReadPosRankSum=1.661;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3420,390,0 chrVIII 500437 . C A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.75;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3527,390,0 chrVIII 500464 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.84;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3862,423,0 chrVIII 500752 . G A 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.0588;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.205;QD=20.72;ReadPosRankSum=1.582;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1960,228,0 chrVIII 500907 . T C 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.678;QD=22.34;ReadPosRankSum=1.705;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2893,333,0 chrVIII 500928 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.00;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2721,294,0 chrVIII 501026 . T C 2566 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.03;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2599,300,0 chrVIII 501036 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=22.13;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2821,312,0 chrVIII 501168 . A C 2534 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.23;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2567,291,0 chrVIII 501212 . A T 2222 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=86.3139;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.78;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2255,246,0 chrVIII 501245 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.73;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1682,192,0 chrVIII 501271 . A T 1571 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=17.65;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1604,180,0 chrVIII 501299 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.77;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1739,198,0 chrVIII 501339 . A T 1925 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.69;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1958,219,0 chrVIII 501349 . T C 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=104;Dels=0.00;FS=3.043;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.657;QD=18.25;ReadPosRankSum=2.402;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:1931,222,0 chrVIII 501446 . T C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=1.399;QD=21.94;ReadPosRankSum=1.666;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2315,264,0 chrVIII 501458 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.57;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2212,249,0 chrVIII 501487 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.74;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2169,240,0 chrVIII 501633 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.60;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2863,318,0 chrVIII 501641 . A G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=3.182;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.604;QD=20.59;ReadPosRankSum=1.678;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2730,312,0 chrVIII 501700 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.32;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1993,234,0 chrVIII 501703 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=18.90;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1942,231,0 chrVIII 501912 . A G 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=6.566;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.474;QD=21.80;ReadPosRankSum=2.314;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2017,225,0 chrVIII 501935 . A G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.709;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.806;QD=21.38;ReadPosRankSum=1.629;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2214,252,0 chrVIII 502009 . C A 2221 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.38;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2254,249,0 chrVIII 502044 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.63;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1525,171,0 chrVIII 502058 . G T 1170 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=17.73;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1203,138,0 chrVIII 502068 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.06;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1357,150,0 chrVIII 502136 . C G 1870 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.00;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1903,219,0 chrVIII 502447 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.20;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2887,312,0 chrVIII 502641 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.76;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2559,288,0 chrVIII 502978 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=7.510;HaplotypeScore=6.7130;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.449;QD=22.25;ReadPosRankSum=2.371;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3493,399,0 chrVIII 503038 . A G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=135;Dels=0.00;FS=2.904;HaplotypeScore=10.0978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.477;QD=21.18;ReadPosRankSum=2.340;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2892,324,0 chrVIII 503308 . T A 2517 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2550,288,0 chrVIII 503518 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3207,354,0 chrVIII 503996 . G A 4435.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.51;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4435,492,0 chrVIII 504323 . A T 1143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.450;QD=18.74;ReadPosRankSum=2.518;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:99:1176,119,0 chrVIII 504776 . A G 3870.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=269;Dels=0.00;FS=2.768;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=12;MQRankSum=-2.440;QD=14.39;ReadPosRankSum=2.382;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,265:269:99:3870,453,0 chrVIII 505427 . T G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0415;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.691;QD=21.35;ReadPosRankSum=0.713;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1848,213,0 chrVIII 505776 . G T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.0261;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=23.01;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4556,513,0 chrVIII 505918 . C G 3794.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.80;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3794,432,0 chrVIII 506159 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=154;Dels=0.00;FS=2.985;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.618;QD=22.90;ReadPosRankSum=2.385;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3526,402,0 chrVIII 506192 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.98;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3868,441,0 chrVIII 506267 . T C 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=179;Dels=0.00;FS=6.012;HaplotypeScore=10.6615;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.983;QD=19.20;ReadPosRankSum=2.949;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:3,173:179:99:3436,399,0 chrVIII 506279 . T G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.612;QD=19.18;ReadPosRankSum=1.692;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3338,384,0 chrVIII 506361 . C G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.13;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4049,465,0 chrVIII 506475 . C A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.41;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3832,420,0 chrVIII 506810 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.16;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3811,426,0 chrVIII 506933 . A T 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=2.937;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.648;QD=22.00;ReadPosRankSum=2.420;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3630,399,0 chrVIII 507108 . A G 2527 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.0555;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.54;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2560,291,0 chrVIII 507281 . A G 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=116;Dels=0.00;FS=3.036;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.032;QD=21.83;ReadPosRankSum=2.344;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2565,297,0 chrVIII 507567 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.58;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2065,237,0 chrVIII 508481 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.3611;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.10;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3668,408,0 chrVIII 508643 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.11;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3030,336,0 chrVIII 508827 . A T 340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=70;Dels=0.00;FS=5.479;HaplotypeScore=15.2927;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.293;QD=4.86;ReadPosRankSum=2.463;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:4,66:70:51:373,51,0 chrVIII 509283 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.20;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3412,378,0 chrVIII 509478 . A G 2665 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.84;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2698,306,0 chrVIII 509758 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=159;Dels=0.00;FS=2.988;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.100;QD=22.03;ReadPosRankSum=2.403;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3503,405,0 chrVIII 509846 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.8533;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.58;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,196:201:99:4337,480,0 chrVIII 509875 . A T 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.0384;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.412;QD=21.77;ReadPosRankSum=0.207;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4006,444,0 chrVIII 510388 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.91;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3483,402,0 chrVIII 510685 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=3.579;HaplotypeScore=15.3120;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.496;QD=22.36;ReadPosRankSum=1.692;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3824,432,0 chrVIII 510752 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.60;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3888,429,0 chrVIII 510778 . C T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.80;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3859,426,0 chrVIII 510844 . T C 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=197;Dels=0.00;FS=3.019;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.567;QD=22.54;ReadPosRankSum=2.400;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4440,507,0 chrVIII 510895 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.88;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3857,429,0 chrVIII 510910 . A G 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=196;Dels=0.00;FS=6.607;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.416;QD=19.24;ReadPosRankSum=2.386;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:2,190:196:99:3772,429,0 chrVIII 510985 . T C 3833.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=10.9204;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.61;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3833,450,0 chrVIII 511414 . T C 3046 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3079,351,0 chrVIII 511546 . C A 3060 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.21;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3093,345,0 chrVIII 511654 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=165;Dels=0.00;FS=7.431;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=1.311;QD=21.05;ReadPosRankSum=2.405;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3473,396,0 chrVIII 511765 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.22;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1583,171,0 chrVIII 511816 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=14.22;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1384,159,0 chrVIII 511870 . T C 130.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;DP=57;Dels=0.00;FS=16.983;HaplotypeScore=76.4975;MLEAC=1;MLEAF=0.500;MQ=31.40;MQ0=0;MQRankSum=-1.322;QD=2.29;ReadPosRankSum=1.625;SB=-3.077e+01 GT:AD:DP:GQ:PL 0/1:28,28:57:0:159,0,0 chrVIII 511871 . T C 139.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.320;DP=56;Dels=0.00;FS=13.948;HaplotypeScore=75.0438;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;MQRankSum=0.713;QD=2.48;ReadPosRankSum=1.696;SB=-2.713e+01 GT:AD:DP:GQ:PL 1/1:28,28:56:1:168,1,0 chrVIII 511877 . T C 137.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;DP=56;Dels=0.04;FS=13.850;HaplotypeScore=79.7149;MLEAC=1;MLEAF=0.500;MQ=31.45;MQ0=0;MQRankSum=0.788;QD=2.45;ReadPosRankSum=-0.822;SB=-2.102e+01 GT:AD:DP:GQ:PL 0/1:28,26:54:23:167,0,23 chrVIII 511880 . C T 130.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=61.1425;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;MQRankSum=-1.193;QD=2.24;ReadPosRankSum=2.060;SB=-3.001e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:18:163,18,0 chrVIII 511885 . T C 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;DP=53;Dels=0.00;FS=5.905;HaplotypeScore=57.4424;MLEAC=1;MLEAF=0.500;MQ=33.96;MQ0=0;MQRankSum=-1.271;QD=0.92;ReadPosRankSum=-2.264;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,13:53:79:79,0,103 chrVIII 511886 . A C 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;DP=52;Dels=0.00;FS=6.042;HaplotypeScore=31.1904;MLEAC=1;MLEAF=0.500;MQ=34.05;MQ0=0;MQRankSum=-1.590;QD=0.83;ReadPosRankSum=-2.216;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,13:52:73:73,0,123 chrVIII 511987 . A G 1494 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=20.75;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1527,177,0 chrVIII 511988 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=21.42;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1554,180,0 chrVIII 512212 . A G 837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.836;DP=78;Dels=0.00;FS=8.217;HaplotypeScore=2.9566;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;MQRankSum=0.061;QD=10.73;ReadPosRankSum=2.326;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:5,73:78:84:870,84,0 chrVIII 512259 . A C 1446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.607;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-1.566;QD=13.90;ReadPosRankSum=1.699;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1479,171,0 chrVIII 512291 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.34;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1923,213,0 chrVIII 512682 . T C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=2.820;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.010;QD=22.43;ReadPosRankSum=2.409;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2770,312,0 chrVIII 512746 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.88;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3798,429,0 chrVIII 513025 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=192;Dels=0.00;FS=9.660;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.545;QD=20.15;ReadPosRankSum=2.932;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3869,456,0 chrVIII 513034 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=3.145;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.848;QD=19.50;ReadPosRankSum=1.679;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:3842,456,0 chrVIII 514468 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.32;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3633,408,0 chrVIII 514482 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.8809;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.48;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3682,411,0 chrVIII 514601 . A T 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.750;QD=17.18;ReadPosRankSum=2.891;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1768,201,0 chrVIII 515162 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.67;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2957,327,0 chrVIII 515676 . T C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.277;QD=19.25;ReadPosRankSum=1.656;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2709,312,0 chrVIII 515688 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.02;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2916,330,0 chrVIII 516015 . T G 3116 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.74;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3149,357,0 chrVIII 516158 . A C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=130;Dels=0.00;FS=2.929;HaplotypeScore=11.4397;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.029;QD=20.78;ReadPosRankSum=2.412;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2734,315,0 chrVIII 516184 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.85;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2577,294,0 chrVIII 516318 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.45;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3266,363,0 chrVIII 516468 . T C 2630 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.29;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2663,300,0 chrVIII 516642 . A G 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.509;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.605;QD=16.20;ReadPosRankSum=1.649;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1378,159,0 chrVIII 516651 . T C 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=-0.110;QD=15.04;ReadPosRankSum=1.557;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1221,144,0 chrVIII 516779 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=21.54;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2209,255,0 chrVIII 516782 . T G 1987 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=19.87;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2020,243,0 chrVIII 516805 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=3.026;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=-0.942;QD=15.70;ReadPosRankSum=2.400;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1572,186,0 chrVIII 516811 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=13.70;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1513,180,0 chrVIII 516908 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=10.8360;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.41;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3966,465,0 chrVIII 516987 . C T 1883 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=16.96;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1916,219,0 chrVIII 516988 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=16.62;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1895,219,0 chrVIII 517036 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.2133;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=16.94;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2997,348,0 chrVIII 517336 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.27;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2932,327,0 chrVIII 517376 . T A 2598 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4897;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=17.79;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2631,291,0 chrVIII 517399 . T A 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=79.8457;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=1.522;QD=14.46;ReadPosRankSum=1.680;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:1942,219,0 chrVIII 517475 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.67;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2315,261,0 chrVIII 517499 . G C 2590 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.58;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2623,297,0 chrVIII 517734 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.08;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3998,441,0 chrVIII 518029 . T C 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=166;Dels=0.00;FS=3.568;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.482;QD=22.17;ReadPosRankSum=1.711;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3680,429,0 chrVIII 518179 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.3061;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.23;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4112,459,0 chrVIII 518458 . G A 5170.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.78;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5170,573,0 chrVIII 518620 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.604;QD=21.75;ReadPosRankSum=2.418;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3414,396,0 chrVIII 518762 . A G 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=-0.122;QD=12.71;ReadPosRankSum=2.923;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1190,135,0 chrVIII 518780 . T A 982 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=13.27;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1015,114,0 chrVIII 518835 . G A 745 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.62;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:778,87,0 chrVIII 518911 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.89;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1063,120,0 chrVIII 518930 . A G 1034 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.54;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1067,120,0 chrVIII 518945 . A G 853 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=16.73;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:886,102,0 chrVIII 518950 . A C 805 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=16.77;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:96:838,96,0 chrVIII 519006 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=14.28;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:904,105,0 chrVIII 519013 . G A 905 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=14.84;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:938,108,0 chrVIII 519077 . T A 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=102;Dels=0.00;FS=5.070;HaplotypeScore=16.7632;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.319;QD=17.41;ReadPosRankSum=3.301;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:4,98:102:99:1809,204,0 chrVIII 519269 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=3.411;HaplotypeScore=8.1668;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.579;QD=21.64;ReadPosRankSum=1.579;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2997,339,0 chrVIII 519286 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.53;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3187,363,0 chrVIII 519366 . C A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=22.30;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3323,363,0 chrVIII 519381 . C G 2821 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.06;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:2854,336,0 chrVIII 519394 . G T 2685 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=17.90;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2718,300,0 chrVIII 519408 . C A 2511 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=15.69;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2544,279,0 chrVIII 519682 . A T 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.599;QD=23.02;ReadPosRankSum=1.705;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3025,333,0 chrVIII 519792 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2762,315,0 chrVIII 520081 . G C 3013 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.83;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3046,360,0 chrVIII 520123 . C G 2590 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.33;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2623,297,0 chrVIII 520252 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1628,183,0 chrVIII 520374 . C T 287 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.13;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:36:320,36,0 chrVIII 520400 . G A 357 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.00;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:42:390,42,0 chrVIII 520415 . G A 457 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=22.85;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:54:490,54,0 chrVIII 521047 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.1412;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=23.49;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3853,423,0 chrVIII 521132 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.91;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3869,438,0 chrVIII 521150 . G A 4253.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.59;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4253,468,0 chrVIII 521315 . T G 6474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.973;QD=23.63;ReadPosRankSum=1.719;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:6474,747,0 chrVIII 521352 . C T 7017.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=15.2328;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.47;SB=-3.479e+03 GT:AD:DP:GQ:PL 1/1:0,297:299:99:7017,783,0 chrVIII 521408 . T C 6696.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=15.6460;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.39;SB=-3.522e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6696,765,0 chrVIII 521787 . G T 2789 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.21;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2822,312,0 chrVIII 521811 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=134;Dels=0.00;FS=3.897;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.266;QD=20.60;ReadPosRankSum=1.705;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,129:134:99:2794,324,0 chrVIII 521866 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.97;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3065,348,0 chrVIII 521990 . G A 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=6.233;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=0.888;QD=22.87;ReadPosRankSum=2.047;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2412,264,0 chrVIII 521991 . T G 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=106;Dels=0.02;FS=3.096;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=0.985;QD=21.78;ReadPosRankSum=1.630;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2342,267,0 chrVIII 522136 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7478;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.50;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2718,306,0 chrVIII 522158 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.81;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2569,291,0 chrVIII 522216 . C T 1885 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=17.78;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1918,207,0 chrVIII 522224 . T A 1731 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=17.85;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1764,195,0 chrVIII 522226 . G T 1721 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=17.56;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1754,195,0 chrVIII 522255 . G C 1519 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=15.99;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1552,174,0 chrVIII 522266 . A G 1491 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=15.37;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1524,177,0 chrVIII 522291 . T C 2100 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=17.95;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2133,246,0 chrVIII 522346 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.03;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2346,267,0 chrVIII 522416 . C A 2760 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=23.59;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2793,309,0 chrVIII 522562 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=21.99;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1924,216,0 chrVIII 522564 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=20.64;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1787,204,0 chrVIII 522626 . T C 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.381;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=0.020;QD=14.62;ReadPosRankSum=1.691;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1276,153,0 chrVIII 522647 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=17.46;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1831,204,0 chrVIII 522698 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=22.65;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2660,300,0 chrVIII 522724 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=22.11;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2863,318,0 chrVIII 522743 . T C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=112;Dels=0.00;FS=3.047;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=-1.607;QD=20.90;ReadPosRankSum=2.405;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2374,276,0 chrVIII 522771 . C T 1834 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=20.15;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1867,207,0 chrVIII 522772 . A C 1763 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=19.16;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1796,207,0 chrVIII 522898 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=16.49;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1830,213,0 chrVIII 522902 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=17.85;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1872,207,0 chrVIII 522909 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=16.46;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1712,189,0 chrVIII 522950 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=10.67;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1271,144,0 chrVIII 523061 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=22.30;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2932,336,0 chrVIII 523118 . C A 2879 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=21.49;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2912,327,0 chrVIII 523127 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=20.04;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2758,315,0 chrVIII 523245 . A T 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.033;QD=21.08;ReadPosRankSum=1.710;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3309,381,0 chrVIII 523268 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=18.52;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3014,339,0 chrVIII 523278 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=3.038;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-2.196;QD=17.51;ReadPosRankSum=2.402;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:2764,324,0 chrVIII 523308 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=18.94;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3215,357,0 chrVIII 523328 . T A 2714 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=16.45;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2747,318,0 chrVIII 523373 . T A 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=3.437;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-0.336;QD=21.55;ReadPosRankSum=-1.283;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3029,323,0 chrVIII 523454 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.97;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2529,276,0 chrVIII 523479 . A C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=133;Dels=0.00;FS=2.804;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.835;QD=19.04;ReadPosRankSum=2.393;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2565,294,0 chrVIII 523570 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=18.57;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1649,183,0 chrVIII 523605 . C T 508 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=12.10;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:541,66,0 chrVIII 523858 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=20.47;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2408,273,0 chrVIII 523870 . T C 2521 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=20.66;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2554,297,0 chrVIII 523907 . A G 2402 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.06;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2435,282,0 chrVIII 523929 . T C 1997 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=16.64;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2030,240,0 chrVIII 523945 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.66;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2067,231,0 chrVIII 523980 . C A 2374 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.62;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2407,267,0 chrVIII 524039 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.79;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2843,324,0 chrVIII 524046 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.14;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2636,288,0 chrVIII 524210 . A C 1978 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.84;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2011,225,0 chrVIII 524219 . T A 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=6.379;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.099;QD=19.62;ReadPosRankSum=2.384;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2230,243,0 chrVIII 524394 . T C 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.214;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.675;QD=19.56;ReadPosRankSum=1.623;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1911,219,0 chrVIII 524455 . A G 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.286;HaplotypeScore=9.5787;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.332;QD=21.76;ReadPosRankSum=1.679;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2862,324,0 chrVIII 524576 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.88;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2092,228,0 chrVIII 524611 . A G 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.887;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.540;QD=22.30;ReadPosRankSum=1.695;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2107,237,0 chrVIII 524639 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.03;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2216,240,0 chrVIII 524655 . A G 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=2.890;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.884;QD=17.32;ReadPosRankSum=1.637;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2129,224,0 chrVIII 524665 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=17.84;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2210,246,0 chrVIII 524701 . C G 2030 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.80;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2063,234,0 chrVIII 525012 . A G 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.534;QD=20.48;ReadPosRankSum=1.700;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2245,261,0 chrVIII 525043 . A G 2148 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.26;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2181,252,0 chrVIII 525089 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.48;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2204,249,0 chrVIII 525272 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=22.43;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1872,213,0 chrVIII 525297 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=22.40;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1713,192,0 chrVIII 525441 . C A 739 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=45;Dels=0.00;FS=11.629;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=0;MQRankSum=-0.651;QD=16.42;ReadPosRankSum=2.855;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:6,39:45:31:772,31,0 chrVIII 525442 . A G 681.79 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.438;DP=44;Dels=0.00;FS=11.408;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;MQRankSum=-0.403;QD=15.50;ReadPosRankSum=2.541;SB=-2.838e+02 GT:AD:DP:GQ:PL 1/1:6,37:44:10:714,10,0 chrVIII 525446 . A C 573.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DP=45;Dels=0.00;FS=22.460;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=0.128;QD=12.73;ReadPosRankSum=1.660;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:9,36:45:80:603,0,80 chrVIII 525451 . T C 438.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;DP=46;Dels=0.00;FS=39.087;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.98;MQ0=0;MQRankSum=0.146;QD=9.52;ReadPosRankSum=-0.781;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:13,33:46:99:468,0,158 chrVIII 525454 . G A 385.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DP=41;Dels=0.00;FS=51.313;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=0.098;QD=9.39;ReadPosRankSum=-1.723;SB=-3.499e+01 GT:AD:DP:GQ:PL 0/1:13,28:41:99:415,0,166 chrVIII 525457 . C A 295.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;DP=38;Dels=0.00;FS=67.283;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=3;MQRankSum=1.622;QD=7.76;ReadPosRankSum=-2.714;SB=-2.931e+00 GT:AD:DP:GQ:PL 0/1:16,22:38:99:325,0,180 chrVIII 525464 . G A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DP=27;Dels=0.00;FS=36.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.58;MQ0=6;MQRankSum=0.978;QD=0.42;ReadPosRankSum=0.978;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:19,8:27:41:41,0,222 chrVIII 525466 . C T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;DP=28;Dels=0.00;FS=36.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=7;MQRankSum=-0.036;QD=0.37;ReadPosRankSum=0.978;SB=0.015 GT:AD:DP:GQ:PL 0/1:19,9:28:40:40,0,189 chrVIII 525468 . C T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;DP=28;Dels=0.00;FS=36.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=7;MQRankSum=-0.036;QD=0.37;ReadPosRankSum=0.905;SB=0.011 GT:AD:DP:GQ:PL 0/1:20,8:28:40:40,0,212 chrVIII 525472 . G A 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DP=29;Dels=0.00;FS=36.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=8;MQRankSum=2.209;QD=0.46;ReadPosRankSum=0.978;SB=0.011 GT:AD:DP:GQ:PL 0/1:21,8:29:43:43,0,194 chrVIII 525479 . T C 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=30;Dels=0.00;FS=36.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=9;MQRankSum=0.616;QD=0.54;ReadPosRankSum=0.688;SB=3.421e-04 GT:AD:DP:GQ:PL 0/1:22,8:30:46:46,0,222 chrVIII 525481 . A G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DP=32;Dels=0.00;FS=36.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=11;MQRankSum=0.688;QD=0.41;ReadPosRankSum=0.398;SB=2.117e-03 GT:AD:DP:GQ:PL 0/1:24,8:32:43:43,0,219 chrVIII 525487 . A T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=33;Dels=0.00;FS=36.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=12;MQRankSum=-0.253;QD=0.37;ReadPosRankSum=-0.833;SB=4.350e-03 GT:AD:DP:GQ:PL 0/1:25,8:33:42:42,0,217 chrVIII 525493 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;DP=33;Dels=0.00;FS=36.553;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=12;MQRankSum=0.616;QD=0.43;ReadPosRankSum=-1.992;SB=3.421e-04 GT:AD:DP:GQ:PL 0/1:25,8:33:44:44,0,213 chrVIII 525495 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;DP=33;Dels=0.00;FS=36.553;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=12;MQRankSum=0.543;QD=0.43;ReadPosRankSum=-1.992;SB=0.011 GT:AD:DP:GQ:PL 0/1:25,8:33:44:44,0,219 chrVIII 525496 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;DP=33;Dels=0.00;FS=36.553;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=12;MQRankSum=1.195;QD=0.43;ReadPosRankSum=-1.992;SB=3.421e-04 GT:AD:DP:GQ:PL 0/1:25,8:33:44:44,0,229 chrVIII 525501 . G A 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;DP=52;Dels=0.00;FS=60.944;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=24.92;MQ0=12;MQRankSum=1.136;QD=1.10;ReadPosRankSum=-4.324;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:24,28:52:87:87,0,195 chrVIII 525502 . T C 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;DP=52;Dels=0.00;FS=74.719;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=24.92;MQ0=12;MQRankSum=1.068;QD=0.54;ReadPosRankSum=-4.360;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:25,27:52:58:58,0,191 chrVIII 525505 . G A 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DP=56;Dels=0.00;FS=74.632;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=12;MQRankSum=1.367;QD=0.75;ReadPosRankSum=-4.481;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:24,31:56:72:72,0,198 chrVIII 525511 . T C 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;DP=63;Dels=0.00;FS=87.857;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=12;MQRankSum=1.351;QD=1.75;ReadPosRankSum=-4.809;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,38:63:99:140,0,165 chrVIII 525514 . A C 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DP=64;Dels=0.00;FS=88.890;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=12;MQRankSum=0.148;QD=1.95;ReadPosRankSum=-2.684;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,39:64:99:155,0,203 chrVIII 525517 . T C 176.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;DP=65;Dels=0.00;FS=74.478;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=12;MQRankSum=-0.117;QD=2.71;ReadPosRankSum=-1.817;SB=-4.017e+00 GT:AD:DP:GQ:PL 0/1:24,41:65:99:206,0,167 chrVIII 525523 . C T 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.578;DP=66;Dels=0.00;FS=90.889;HaplotypeScore=2.4960;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=12;MQRankSum=0.384;QD=2.06;ReadPosRankSum=2.428;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,41:66:99:166,0,207 chrVIII 525526 . G A 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.240;DP=64;Dels=0.00;FS=88.890;HaplotypeScore=2.4960;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=12;MQRankSum=1.691;QD=1.78;ReadPosRankSum=3.783;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,39:64:99:144,0,206 chrVIII 525530 . T A 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=60;Dels=0.00;FS=74.842;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=12;MQRankSum=0.196;QD=1.77;ReadPosRankSum=4.146;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,37:60:99:136,0,146 chrVIII 525533 . T C 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;DP=52;Dels=0.00;FS=57.390;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=12;MQRankSum=0.071;QD=2.27;ReadPosRankSum=4.093;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,33:52:70:148,0,70 chrVIII 525535 . G A 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;DP=52;Dels=0.00;FS=57.390;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=12;MQRankSum=2.100;QD=2.33;ReadPosRankSum=4.093;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,33:52:47:151,0,47 chrVIII 525537 . A T 132.98 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;DP=50;Dels=0.00;FS=41.692;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.53;MQ0=12;MQRankSum=2.073;QD=2.66;ReadPosRankSum=3.541;SB=-3.988e+00 GT:AD:DP:GQ:PL 0/1:17,33:50:3:162,0,3 chrVIII 525538 . A G 126.79 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;DP=50;Dels=0.00;FS=41.692;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.53;MQ0=12;MQRankSum=0.950;QD=2.54;ReadPosRankSum=3.541;SB=-3.805e+00 GT:AD:DP:GQ:PL 0/1:17,33:50:4:156,0,4 chrVIII 525544 . C A 261 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=12;QD=4.28;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:12,49:61:33:294,33,0 chrVIII 525547 . C T 232 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.34;MQ0=12;MQRankSum=0.111;QD=3.93;ReadPosRankSum=1.438;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:13,46:59:33:265,33,0 chrVIII 525556 . G A 302 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=7;QD=5.39;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:7,49:56:39:335,39,0 chrVIII 525559 . T C 292 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=6;QD=5.41;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:6,48:54:39:325,39,0 chrVIII 525562 . A C 290 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=5;QD=5.37;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:5,49:54:39:323,39,0 chrVIII 525574 . T G 318.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.632;DP=52;Dels=0.00;FS=30.704;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=3;MQRankSum=2.097;QD=6.12;ReadPosRankSum=2.249;SB=-4.984e-02 GT:AD:DP:GQ:PL 1/1:5,47:52:23:351,23,0 chrVIII 525578 . G C 318 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=6.62;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,45:48:42:351,42,0 chrVIII 525579 . G A 352 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=7.33;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:45:385,45,0 chrVIII 525593 . A G 164.03 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;QD=5.66;SB=-4.304e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:24:197,24,0 chrVIII 525598 . A G 119.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.368;DP=41;Dels=0.00;FS=90.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=2.021;QD=2.90;ReadPosRankSum=4.028;SB=-3.038e+00 GT:AD:DP:GQ:PL 0/1:14,27:41:20:149,0,20 chrVIII 525599 . C T 201.01 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=4.90;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:27:234,27,0 chrVIII 525601 . A G 189.01 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=4.61;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:27:222,27,0 chrVIII 525607 . T C 113.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.109;DP=46;Dels=0.00;FS=100.100;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.63;MQ0=0;MQRankSum=1.807;QD=2.46;ReadPosRankSum=2.030;SB=-3.020e+00 GT:AD:DP:GQ:PL 0/1:19,27:46:21:143,0,21 chrVIII 525610 . C T 197.01 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;QD=4.28;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:27:230,27,0 chrVIII 525613 . A T 197.01 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;QD=4.28;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:27:230,27,0 chrVIII 525619 . A G 123.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;DP=51;Dels=0.00;FS=98.956;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=0;MQRankSum=1.236;QD=2.41;ReadPosRankSum=-1.746;SB=-2.303e-02 GT:AD:DP:GQ:PL 0/1:27,24:51:20:153,0,20 chrVIII 525622 . T C,G 51.76 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.93;MQ0=0;QD=1.44;SB=-2.518e+02 GT:AD:DP:GQ:PL 1/2:0,10,26:36:31:110,40,31,70,0,64 chrVIII 525623 . G A 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DP=42;Dels=0.00;FS=61.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=0;MQRankSum=-0.221;QD=0.81;ReadPosRankSum=1.905;SB=-8.238e-03 GT:AD:DP:GQ:PL 0/1:32,10:42:31:64,0,31 chrVIII 525624 . A C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;DP=48;Dels=0.00;FS=63.381;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=0.063;QD=0.65;ReadPosRankSum=2.551;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:38,10:48:59:61,0,59 chrVIII 525625 . T A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.557;DP=48;Dels=0.00;FS=63.381;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=-0.597;QD=0.73;ReadPosRankSum=2.526;SB=-6.526e-03 GT:AD:DP:GQ:PL 0/1:38,10:48:55:65,0,55 chrVIII 525628 . T A 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.313;DP=48;Dels=0.00;FS=63.381;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=1.307;QD=0.63;ReadPosRankSum=-0.647;SB=-9.702e+01 GT:AD:DP:GQ:PL 0/1:10,38:48:60:60,0,65 chrVIII 525631 . G A,T 80.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.51;MQ0=0;QD=1.67;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/2:0,10,38:48:57:140,66,57,74,0,65 chrVIII 525634 . T C 121.13 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.4870;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=2.52;SB=-3.731e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:18:154,18,0 chrVIII 525635 . G A 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.4870;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=2.65;SB=-3.791e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:18:160,18,0 chrVIII 525637 . T C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300;DP=49;Dels=0.00;FS=67.137;HaplotypeScore=7.4870;MLEAC=1;MLEAF=0.500;MQ=26.24;MQ0=1;MQRankSum=0.533;QD=0.55;ReadPosRankSum=2.638;SB=-7.402e+01 GT:AD:DP:GQ:PL 0/1:10,37:49:57:57,0,65 chrVIII 525644 . A C 26.76 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;DP=75;Dels=0.00;FS=88.049;HaplotypeScore=8.7985;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=2;MQRankSum=1.588;QD=0.36;ReadPosRankSum=2.261;SB=17.24 GT:AD:DP:GQ:PL 0/1:9,57:75:14:56,0,14 chrVIII 525649 . C T 167.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=36.6216;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=4;QD=2.01;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:83:24:200,24,0 chrVIII 525657 . G C 295 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.472;DP=86;Dels=0.00;FS=50.667;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=4;MQRankSum=1.576;QD=3.43;ReadPosRankSum=2.769;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:10,76:86:39:328,39,0 chrVIII 525658 . T A 306 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DP=86;Dels=0.00;FS=50.667;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=4;MQRankSum=2.270;QD=3.56;ReadPosRankSum=2.769;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:10,76:86:39:339,39,0 chrVIII 525659 . T A 317 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;DP=81;Dels=0.00;FS=9.322;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=4;MQRankSum=1.372;QD=3.91;ReadPosRankSum=-1.552;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:5,76:81:39:350,39,0 chrVIII 525661 . A C 303 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.237;DP=81;Dels=0.00;FS=9.322;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=4;MQRankSum=1.507;QD=3.74;ReadPosRankSum=-1.552;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:5,76:81:39:336,39,0 chrVIII 525667 . C G 307 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.063;DP=92;Dels=0.00;FS=9.445;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=4;MQRankSum=1.378;QD=3.34;ReadPosRankSum=-1.417;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:5,87:92:39:340,39,0 chrVIII 525672 . T A 277 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.691;DP=88;Dels=0.00;FS=8.829;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=4;MQRankSum=1.567;QD=3.15;ReadPosRankSum=-1.155;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:5,83:88:36:310,36,0 chrVIII 525675 . C A 310 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.303;DP=84;Dels=0.00;FS=8.617;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=4;MQRankSum=1.516;QD=3.69;ReadPosRankSum=-0.087;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:5,79:84:39:343,39,0 chrVIII 525676 . T G 308 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.602;DP=84;Dels=0.00;FS=8.617;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=4;MQRankSum=1.516;QD=3.67;ReadPosRankSum=0.043;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:5,79:84:39:341,39,0 chrVIII 525679 . T C 305 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.124;DP=94;Dels=0.00;FS=4.856;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=4;MQRankSum=1.753;QD=3.24;ReadPosRankSum=2.068;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:7,87:94:39:338,39,0 chrVIII 525692 . T G 212.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.653;DP=91;Dels=0.00;FS=126.021;HaplotypeScore=4.6823;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=4;MQRankSum=2.881;QD=2.33;ReadPosRankSum=-0.260;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/1:14,77:91:16:242,0,16 chrVIII 525694 . C A 313 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.329;DP=90;Dels=0.00;FS=9.803;HaplotypeScore=5.6557;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=4;MQRankSum=1.410;QD=3.48;ReadPosRankSum=1.289;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:5,85:90:39:346,39,0 chrVIII 525700 . A T 288 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.853;DP=97;Dels=0.00;FS=7.235;HaplotypeScore=5.6557;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=6;MQRankSum=1.827;QD=2.97;ReadPosRankSum=0.988;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:8,89:97:36:321,36,0 chrVIII 525703 . C T 311 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=96;Dels=0.00;FS=10.000;HaplotypeScore=5.6557;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=6;MQRankSum=1.309;QD=3.24;ReadPosRankSum=1.578;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:7,89:96:39:344,39,0 chrVIII 525706 . G T 230.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.593;DP=95;Dels=0.00;FS=118.032;HaplotypeScore=3.7089;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=6;MQRankSum=2.034;QD=2.42;ReadPosRankSum=-0.456;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:15,80:95:11:260,0,11 chrVIII 525714 . A G 230.19 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.203;DP=85;Dels=0.00;FS=104.165;HaplotypeScore=30.3205;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=6;MQRankSum=2.267;QD=2.71;ReadPosRankSum=-0.073;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:14,71:85:8:262,8,0 chrVIII 525718 . A T 138.46 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.948;DP=75;Dels=0.00;FS=17.275;HaplotypeScore=21.7202;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=6;MQRankSum=1.744;QD=1.85;ReadPosRankSum=-6.352;SB=-1.459e+00 GT:AD:DP:GQ:PL 0/1:46,29:75:1:167,0,1 chrVIII 525720 . T A 145.77 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.692;DP=74;Dels=0.00;FS=62.104;HaplotypeScore=20.7624;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=6;MQRankSum=1.729;QD=1.97;ReadPosRankSum=-2.560;SB=-4.778e+00 GT:AD:DP:GQ:PL 0/1:12,29:74:0:174,0,0 chrVIII 525730 . T C 12.30 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;DP=50;Dels=0.00;FS=51.327;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=24.89;MQ0=6;MQRankSum=0.633;QD=0.25;ReadPosRankSum=0.919;SB=-3.044e+00 GT:AD:DP:GQ:PL 0/1:9,40:50:19:42,0,19 chrVIII 525733 . T C 72.27 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DP=49;Dels=0.00;FS=51.732;HaplotypeScore=18.0202;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=4;MQRankSum=1.177;QD=1.47;ReadPosRankSum=1.137;SB=-3.282e+00 GT:AD:DP:GQ:PL 0/1:7,41:49:9:102,0,9 chrVIII 525736 . T C 75.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;DP=48;Dels=0.00;FS=51.732;HaplotypeScore=21.8891;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=3;MQRankSum=-0.339;QD=1.58;ReadPosRankSum=1.536;SB=-3.805e+00 GT:AD:DP:GQ:PL 0/1:7,41:48:4:105,0,4 chrVIII 525744 . G C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=2;QD=1.71;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,35:39:12:99,12,0 chrVIII 525746 . A G 67.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.034;DP=43;Dels=0.00;FS=28.235;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=6;MQRankSum=0.034;QD=1.57;ReadPosRankSum=1.243;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:7,35:43:12:100,12,0 chrVIII 525749 . G T 70.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.914;DP=48;Dels=0.00;FS=28.235;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.14;MQ0=11;MQRankSum=1.175;QD=1.47;ReadPosRankSum=1.310;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:12,36:48:12:103,12,0 chrVIII 525763 . T A 69.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.06;MQ0=21;QD=1.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:21,26:47:12:102,12,0 chrVIII 525767 . T C 69.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=22;QD=1.66;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:22,20:42:12:102,12,0 chrVIII 525769 . A G 68.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=22;QD=1.63;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:22,20:42:12:101,12,0 chrVIII 525775 . T C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.92;MQ0=23;QD=1.05;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:23,16:39:9:73,9,0 chrVIII 525778 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.95;MQ0=23;QD=1.18;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:23,15:38:9:77,9,0 chrVIII 525784 . T C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.24;MQ0=23;QD=1.24;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:23,10:33:9:73,9,0 chrVIII 525787 . C T 85.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.85;MQ0=23;QD=2.44;SB=-4.324e+01 GT:AD:DP:GQ:PL 1/1:23,12:35:15:118,15,0 chrVIII 525797 . G A 172.01 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.63;MQ0=21;QD=4.65;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:21,16:37:27:205,27,0 chrVIII 525799 . A C 219 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=21;QD=5.34;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:21,19:41:33:252,33,0 chrVIII 525820 . T C 621 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=60;Dels=0.00;FS=26.599;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.93;MQ0=21;MQRankSum=2.820;QD=10.35;ReadPosRankSum=2.240;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:24,36:60:78:654,78,0 chrVIII 525838 . G A 1102 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=22.53;MQ0=20;QD=11.85;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:19,74:93:99:1135,132,0 chrVIII 525958 . A C 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.560;DP=80;Dels=0.00;FS=107.210;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=21;MQRankSum=0.360;QD=2.91;ReadPosRankSum=-0.729;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:34,46:80:36:263,0,36 chrVIII 525980 . G C 175.03 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.06;MQ0=17;QD=6.25;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:208,24,0 chrVIII 525997 . C T 100.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.40;MQ0=11;QD=3.23;SB=-1.492e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:15:133,15,0 chrVIII 526004 . A G 120.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=33;Dels=0.00;FS=4.191;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=11;MQRankSum=-0.578;QD=3.64;ReadPosRankSum=1.569;SB=-1.471e+02 GT:AD:DP:GQ:PL 1/1:1,31:33:18:153,18,0 chrVIII 526005 . C G 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;DP=33;Dels=0.00;FS=50.655;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=21.39;MQ0=10;MQRankSum=-0.560;QD=0.64;ReadPosRankSum=-2.648;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:17,14:33:51:51,0,86 chrVIII 526099 . A G 3140 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.728;DP=241;Dels=0.00;FS=38.803;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=12;MQRankSum=-0.532;QD=13.03;ReadPosRankSum=1.939;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:10,230:241:99:3173,270,0 chrVIII 526250 . T C 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.551;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;MQRankSum=1.325;QD=14.35;ReadPosRankSum=1.596;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2229,258,0 chrVIII 526318 . C G 1272 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=0;QD=11.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1305,147,0 chrVIII 526324 . C T 1152 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=11.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:1185,138,0 chrVIII 526333 . T C 1117 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;QD=13.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1150,129,0 chrVIII 526339 . A T 756 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;MQRankSum=2.105;QD=17.58;ReadPosRankSum=2.336;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,41:43:93:789,93,0 chrVIII 526341 . C G 590 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=14.39;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:75:623,75,0 chrVIII 526342 . A T 498 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=12.15;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:69:531,69,0 chrVIII 526356 . C G 796 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=11.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,66:67:99:829,99,0 chrVIII 526357 . A C 765 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=11.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,66:67:99:798,99,0 chrVIII 526360 . T C 788 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;MQRankSum=1.492;QD=10.94;ReadPosRankSum=1.444;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,71:72:99:821,102,0 chrVIII 526366 . C T 873 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;MQRankSum=1.504;QD=11.49;ReadPosRankSum=0.729;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:906,102,0 chrVIII 526369 . G A 868 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;MQRankSum=1.504;QD=11.42;ReadPosRankSum=0.456;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:901,102,0 chrVIII 526453 . T G 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:105,12,0 chrVIII 526459 . C T 169.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.78;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:202,24,0 chrVIII 526462 . T C 205.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.50;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:238,27,0 chrVIII 526468 . T C 346 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.35;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:42:379,42,0 chrVIII 526480 . G A 578 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.12;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:611,66,0 chrVIII 526484 . T C 560 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.40;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:593,66,0 chrVIII 526486 . G C 544 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.76;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:577,66,0 chrVIII 526489 . T C 543 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.72;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:576,66,0 chrVIII 526491 . C G 532 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.28;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:565,66,0 chrVIII 526492 . T C 510 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.40;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:543,66,0 chrVIII 526495 . A C 506 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.24;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:539,66,0 chrVIII 526498 . T C 522 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.88;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:555,66,0 chrVIII 526501 . C T 556 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.53;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:66:589,66,0 chrVIII 527065 . C A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=0.25;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,67:67:6:48,6,0 chrVIII 527077 . T A 208 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.512;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=0;MQRankSum=-1.417;QD=4.33;ReadPosRankSum=1.607;SB=3.00 GT:AD:DP:GQ:PL 1/1:12,36:48:30:241,30,0 chrVIII 527080 . G A 217 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=0;QD=4.34;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:30:250,30,0 chrVIII 527092 . G C 266 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=3.80;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:36:299,36,0 chrVIII 527095 . C T 345 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=0;QD=4.66;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:45:378,45,0 chrVIII 527098 . T A 355 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=0;MQRankSum=1.813;QD=4.38;ReadPosRankSum=2.913;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:3,78:81:45:388,45,0 chrVIII 527108 . C T 366 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=0;QD=4.31;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:48:399,48,0 chrVIII 527109 . A T 398 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=0;QD=4.68;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:51:431,51,0 chrVIII 527110 . A G 386 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=0;QD=4.54;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:51:419,51,0 chrVIII 527119 . C T 134.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.727;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.30;MQ0=0;MQRankSum=2.625;QD=1.51;ReadPosRankSum=8.058;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,39:89:99:164,0,163 chrVIII 527125 . T C 172.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=0;QD=4.41;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:24:205,24,0 chrVIII 527126 . G A 173.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=0;QD=4.44;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:24:206,24,0 chrVIII 527129 . A T 181.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=0;QD=4.64;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:24:214,24,0 chrVIII 527131 . T C 145.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=7.9399;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=0;QD=3.72;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:21:178,21,0 chrVIII 527137 . T C 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;QD=3.66;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:21:172,21,0 chrVIII 527143 . T A 152.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;MQRankSum=-1.951;QD=4.00;ReadPosRankSum=-4.315;SB=2.94 GT:AD:DP:GQ:PL 1/1:8,30:38:21:185,21,0 chrVIII 527146 . A T 125.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.936;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;MQRankSum=-1.681;QD=3.48;ReadPosRankSum=-3.946;SB=2.87 GT:AD:DP:GQ:PL 1/1:9,27:36:18:158,18,0 chrVIII 527233 . T A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;MQRankSum=-0.255;QD=1.52;ReadPosRankSum=2.123;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:2,13:15:6:54,6,0 chrVIII 527243 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=0;QD=2.61;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:79,9,0 chrVIII 527244 . A T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=0;QD=2.83;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:83,9,0 chrVIII 527245 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=0;QD=2.67;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:80,9,0 chrVIII 527269 . C T 244.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.261;DP=35;Dels=0.00;FS=89.214;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.05;MQ0=0;MQRankSum=-3.215;QD=6.98;ReadPosRankSum=-4.813;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:12,23:35:18:277,18,0 chrVIII 527270 . A G 244.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.268;DP=37;Dels=0.00;FS=89.214;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=0;MQRankSum=-3.215;QD=6.60;ReadPosRankSum=-4.813;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:12,23:37:18:277,18,0 chrVIII 527274 . G A 436 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.518;DP=68;Dels=0.00;FS=77.620;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=21.12;MQ0=0;MQRankSum=-2.791;QD=6.41;ReadPosRankSum=-5.236;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:12,56:68:39:469,39,0 chrVIII 527311 . T A 5209.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=3.6794;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=3;QD=18.34;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:2,282:284:99:5209,585,0 chrVIII 527416 . T C 14.20 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=9.8232;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=1;MQRankSum=1.960;QD=0.38;ReadPosRankSum=3.976;SB=-2.817e-02 GT:AD:DP:GQ:PL 0/1:8,28:37:20:44,0,20 chrVIII 527421 . T A 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.018;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=19.3148;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=1;MQRankSum=2.910;QD=0.25;ReadPosRankSum=4.425;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:15,27:42:40:40,0,64 chrVIII 527424 . C T 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=31.9262;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=1;MQRankSum=-2.388;QD=1.44;ReadPosRankSum=-4.496;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:29,14:43:33:92,0,33 chrVIII 527432 . C T 186.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.951;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=46.4711;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=1;MQRankSum=-1.673;QD=3.58;ReadPosRankSum=-5.178;SB=2.97 GT:AD:DP:GQ:PL 1/1:31,20:51:24:219,24,0 chrVIII 527439 . C T 376 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=59.2385;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-2.136;QD=6.27;ReadPosRankSum=-1.181;SB=3.00 GT:AD:DP:GQ:PL 1/1:21,37:58:45:409,45,0 chrVIII 527440 . C T 392 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=49.7470;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=6.64;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:45:425,45,0 chrVIII 527446 . T C 347.12 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.793;DP=66;Dels=0.00;FS=13.543;HaplotypeScore=94.2079;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;MQRankSum=-1.180;QD=5.26;ReadPosRankSum=2.659;SB=0.875 GT:AD:DP:GQ:PL 1/1:24,42:66:5:378,5,0 chrVIII 527449 . A T 282.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DP=63;Dels=0.00;FS=9.904;HaplotypeScore=85.3745;MLEAC=1;MLEAF=0.500;MQ=27.90;MQ0=0;MQRankSum=-1.149;QD=4.48;ReadPosRankSum=1.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,33:63:85:312,0,85 chrVIII 527450 . T G 334.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;DP=64;Dels=0.00;FS=51.041;HaplotypeScore=82.2829;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=0;MQRankSum=1.376;QD=5.22;ReadPosRankSum=3.552;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:5,59:64:32:364,0,32 chrVIII 527467 . C A 844.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.017;DP=103;Dels=0.00;FS=2.363;HaplotypeScore=60.2883;MLEAC=1;MLEAF=0.500;MQ=29.48;MQ0=3;MQRankSum=0.315;QD=8.19;ReadPosRankSum=4.003;SB=-3.050e+02 GT:AD:DP:GQ:PL 0/1:20,82:103:24:874,0,24 chrVIII 527477 . T A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.470;DP=110;Dels=0.00;FS=37.987;HaplotypeScore=11.5371;MLEAC=1;MLEAF=0.500;MQ=29.06;MQ0=7;MQRankSum=-1.364;QD=0.27;ReadPosRankSum=-0.596;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,12:110:60:60,0,1155 chrVIII 527479 . T A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;DP=99;Dels=0.00;FS=33.565;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.28;MQ0=7;MQRankSum=-1.160;QD=0.39;ReadPosRankSum=-1.248;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,12:99:69:69,0,1029 chrVIII 527517 . C A 1238 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=9;QD=14.40;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1271,144,0 chrVIII 527525 . G T 1102 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=10;QD=13.44;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1135,129,0 chrVIII 527636 . A T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=0;QD=2.27;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:47,6,0 chrVIII 527641 . T G 24.07 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.986;DP=86;Dels=0.00;FS=57.147;HaplotypeScore=15.5748;MLEAC=1;MLEAF=0.500;MQ=20.77;MQ0=0;MQRankSum=1.100;QD=0.28;ReadPosRankSum=3.723;SB=17.95 GT:AD:DP:GQ:PL 1/1:78,5:86:6:55,6,0 chrVIII 527647 . A T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=228;Dels=0.00;FS=23.051;HaplotypeScore=62.3108;MLEAC=1;MLEAF=0.500;MQ=22.28;MQ0=2;MQRankSum=-0.849;QD=0.16;ReadPosRankSum=6.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,56:228:66:66,0,139 chrVIII 527656 . A G 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.254;DP=248;Dels=0.00;FS=10.481;HaplotypeScore=23.2055;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=6;MQRankSum=0.679;QD=0.27;ReadPosRankSum=7.192;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:168,76:248:98:98,0,209 chrVIII 527670 . C T 142.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.433;DP=261;Dels=0.00;FS=15.910;HaplotypeScore=59.4279;MLEAC=1;MLEAF=0.500;MQ=21.97;MQ0=11;MQRankSum=-2.005;QD=0.54;ReadPosRankSum=4.050;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:145,116:261:99:172,0,225 chrVIII 527671 . G A 143.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.027;DP=261;Dels=0.00;FS=16.198;HaplotypeScore=59.4698;MLEAC=1;MLEAF=0.500;MQ=21.97;MQ0=11;MQRankSum=-1.439;QD=0.55;ReadPosRankSum=3.887;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:143,118:261:99:173,0,200 chrVIII 527672 . A G 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.560;DP=261;Dels=0.00;FS=27.121;HaplotypeScore=59.4698;MLEAC=1;MLEAF=0.500;MQ=21.97;MQ0=11;MQRankSum=1.378;QD=0.16;ReadPosRankSum=-3.747;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:141,120:261:72:72,0,334 chrVIII 527678 . G A 542 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=163.5857;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=11;QD=2.08;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,259:259:63:575,63,0 chrVIII 527680 . C T 119.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.588;DP=263;Dels=0.00;FS=2.816;HaplotypeScore=193.1324;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=13;MQRankSum=-0.339;QD=0.45;ReadPosRankSum=3.941;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:185,78:263:99:149,0,293 chrVIII 527688 . C T 117.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.211;DP=261;Dels=0.00;FS=6.316;HaplotypeScore=148.6046;MLEAC=1;MLEAF=0.500;MQ=22.12;MQ0=13;MQRankSum=0.377;QD=0.45;ReadPosRankSum=3.568;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:189,72:261:99:147,0,304 chrVIII 527689 . T C 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;DP=263;Dels=0.00;FS=7.629;HaplotypeScore=146.6803;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=13;MQRankSum=0.343;QD=0.44;ReadPosRankSum=4.449;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:191,72:263:99:145,0,312 chrVIII 527690 . G A 113.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.680;DP=258;Dels=0.00;FS=10.584;HaplotypeScore=145.5533;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=13;MQRankSum=-1.180;QD=0.44;ReadPosRankSum=4.130;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:185,72:258:99:143,0,306 chrVIII 527695 . T A 543 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.247;DP=252;Dels=0.00;FS=78.444;HaplotypeScore=100.5871;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=13;MQRankSum=3.081;QD=2.15;ReadPosRankSum=1.746;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:70,182:252:45:576,45,0 chrVIII 527704 . A G 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.574;DP=249;Dels=0.00;FS=34.787;HaplotypeScore=130.9129;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=12;MQRankSum=-0.717;QD=0.53;ReadPosRankSum=0.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,54:249:99:162,0,485 chrVIII 527709 . C T 298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.511;DP=234;Dels=0.00;FS=110.031;HaplotypeScore=119.7169;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=14;MQRankSum=0.529;QD=1.27;ReadPosRankSum=-4.231;SB=-3.080e+02 GT:AD:DP:GQ:PL 0/1:100,134:234:99:328,0,507 chrVIII 527717 . A G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DP=170;Dels=0.00;FS=90.976;HaplotypeScore=73.6213;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=15;MQRankSum=0.212;QD=0.07;ReadPosRankSum=-1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,36:170:42:42,0,938 chrVIII 527776 . T C 740.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DP=335;Dels=0.00;FS=1.001;HaplotypeScore=11.9747;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=16;MQRankSum=-2.094;QD=2.21;ReadPosRankSum=-0.373;SB=-3.130e+02 GT:AD:DP:GQ:PL 0/1:245,89:335:99:770,0,2596 chrVIII 527797 . T G 4015.01 filter AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=16;QD=13.04;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,308:308:99:4015,479,0 chrVIII 527851 . G A 1323 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=23.6057;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=12;QD=10.84;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1356,156,0 chrVIII 527897 . A G 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DP=12;Dels=0.00;FS=6.990;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=18.61;MQ0=2;MQRankSum=1.733;QD=3.25;ReadPosRankSum=0.000;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:2,8:12:9:71,9,0 chrVIII 527903 . G A 264 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.5860;MLEAC=2;MLEAF=1.00;MQ=16.25;MQ0=6;QD=8.00;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,30:33:33:297,33,0 chrVIII 528003 . C T 1940 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.086;DP=187;Dels=0.00;FS=15.657;HaplotypeScore=24.5720;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=47;MQRankSum=4.544;QD=10.37;ReadPosRankSum=4.001;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:16,170:187:99:1973,228,0 chrVIII 528019 . G A 1337 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=45;QD=10.96;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1370,159,0 chrVIII 528043 . C T 1105 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.416;DP=91;Dels=0.00;FS=3.054;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=33;MQRankSum=2.091;QD=12.14;ReadPosRankSum=0.337;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:14,75:91:99:1138,132,0 chrVIII 528096 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.37;MQ0=27;QD=0.61;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:6:52,6,0 chrVIII 528226 . A G 289 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.477;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.5016;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=4;MQRankSum=0.519;QD=8.03;ReadPosRankSum=3.477;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:7,29:36:39:322,39,0 chrVIII 528233 . A G 294 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=2;MQRankSum=1.261;QD=12.25;ReadPosRankSum=1.576;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:2,22:24:39:327,39,0 chrVIII 528234 . C T 306 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=1;QD=13.91;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:339,39,0 chrVIII 528245 . C G 307 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=1;QD=13.35;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:340,39,0 chrVIII 528289 . T A 67.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.30;MQ0=0;MQRankSum=-1.735;QD=4.22;ReadPosRankSum=0.651;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,15:16:12:100,12,0 chrVIII 528301 . G A 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.20;MQ0=0;MQRankSum=-1.736;QD=3.28;ReadPosRankSum=0.744;SB=2.14 GT:AD:DP:GQ:PL 1/1:1,13:14:9:78,9,0 chrVIII 528313 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.76;MQ0=0;MQRankSum=-1.737;QD=1.45;ReadPosRankSum=0.935;SB=1.29 GT:AD:DP:GQ:PL 1/1:1,12:13:6:50,6,0 chrVIII 528321 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.09;MQ0=0;MQRankSum=-1.738;QD=1.73;ReadPosRankSum=1.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,11:12:6:52,6,0 chrVIII 528335 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.47;MQ0=0;MQRankSum=-1.739;QD=1.98;ReadPosRankSum=1.423;SB=1.30 GT:AD:DP:GQ:PL 1/1:1,10:11:6:53,6,0 chrVIII 540634 . C A 94.26 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.7839;MLEAC=2;MLEAF=1.00;MQ=10.11;MQ0=71;QD=0.97;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,91:97:15:127,15,0 chrVIII 540697 . C G 1248 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=16.29;MQ0=35;QD=7.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:1281,156,0 chrVIII 540721 . G A 1295 filter AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.11;MQ0=20;QD=6.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:1328,150,0 chrVIII 540760 . T G 390 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.413;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.33;MQ0=4;MQRankSum=-0.474;QD=2.05;ReadPosRankSum=3.356;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:4,186:190:48:423,48,0 chrVIII 540764 . C T 314 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.44;MQ0=2;QD=1.75;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,178:178:39:347,39,0 chrVIII 540767 . T G 302 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=16.39;MQ0=2;MQRankSum=0.705;QD=1.74;ReadPosRankSum=1.712;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:2,172:174:39:335,39,0 chrVIII 540783 . T C 74.51 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.2649;MLEAC=2;MLEAF=1.00;MQ=16.17;MQ0=1;QD=0.50;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,150:150:12:107,12,0 chrVIII 540829 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.22;MQ0=0;QD=0.24;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,82:82:6:51,6,0 chrVIII 540840 . A G 403 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.39;MQ0=0;QD=5.30;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:51:436,51,0 chrVIII 540846 . G A 524 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=18.68;MQ0=1;QD=6.99;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:63:557,63,0 chrVIII 540930 . C G 3686.01 filter AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=17.4654;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=5;QD=13.40;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:3686,423,0 chrVIII 541011 . G A 1546 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=18.96;MQ0=11;QD=8.94;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,173:173:99:1579,177,0 chrVIII 541066 . T A 226 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=31;QD=4.26;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:30:259,30,0 chrVIII 541067 . T G 203.01 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.65;MQ0=31;QD=3.90;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,51:52:27:236,27,0 chrVIII 541101 . A T 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=8.14;MQ0=47;MQRankSum=0.198;QD=0.85;ReadPosRankSum=1.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,52:55:9:79,9,0 chrVIII 541120 . C T 527 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3964;MLEAC=2;MLEAF=1.00;MQ=14.07;MQ0=55;MQRankSum=-1.155;QD=5.12;ReadPosRankSum=0.577;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:63:560,63,0 chrVIII 541209 . C T 975 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=15.80;MQ0=52;QD=7.68;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:1008,114,0 chrVIII 541236 . A G 152.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.79;MQ0=50;MQRankSum=-1.734;QD=2.14;ReadPosRankSum=1.561;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:1,69:71:21:185,21,0 chrVIII 541250 . T C 137.06 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.29;MQ0=45;QD=2.08;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:21:170,21,0 chrVIII 541292 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.30;MQ0=55;QD=0.72;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,67:67:9:80,9,0 chrVIII 541460 . A C 1172 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=113;Dels=0.00;FS=3.174;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=32;MQRankSum=-0.748;QD=10.37;ReadPosRankSum=1.689;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1205,144,0 chrVIII 541572 . T C 922 filter AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=13.00;MQ0=104;QD=4.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:955,108,0 chrVIII 541671 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=6.81;MQ0=135;MQRankSum=-0.451;QD=0.13;ReadPosRankSum=2.254;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:2,157:161:6:52,6,0 chrVIII 543606 . A T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=1;QD=2.20;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:51,6,0 chrVIII 543609 . G T 46.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=1;QD=5.22;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:79,9,0 chrVIII 543656 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.31;MQ0=28;QD=1.28;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:27,9:36:9:78,9,0 chrVIII 549147 . A G 74.51 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.67;MQ0=14;QD=4.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,4:18:12:107,12,0 chrVIII 549311 . T A 78.51 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.15;MQ0=17;QD=3.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,15:21:12:111,12,0 chrVIII 549314 . A G 70.51 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.11;MQ0=11;QD=4.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,12:15:12:103,12,0 chrVIII 549354 . A T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=3;MQRankSum=1.026;QD=1.62;ReadPosRankSum=-1.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:5,2:7:41:41,0,43 chrVIII 553270 . A G 1902 filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=88;QD=10.45;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,181:182:99:1935,219,0 chrVIII 553278 . G A 2032 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=73;QD=11.42;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,177:178:99:2065,234,0 chrVIII 553366 . G A 1037 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=3;QD=23.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1070,117,0 chrVIII 553523 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=118.3387;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=15.61;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2312,264,0 chrVIII 553563 . A T 4887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=241;Dels=0.00;FS=13.908;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=1.115;QD=20.28;ReadPosRankSum=2.409;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:4887,540,0 chrVIII 553606 . A T 7770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=320;Dels=0.00;FS=15.659;HaplotypeScore=15.1170;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.711;QD=24.28;ReadPosRankSum=2.434;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,317:320:99:7770,861,0 chrVIII 553644 . A G 5935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=267;Dels=0.00;FS=6.734;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=1.089;QD=22.23;ReadPosRankSum=1.706;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,263:267:99:5935,698,0 chrVIII 553651 . T A 5750.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=7.6279;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.62;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5750,666,0 chrVIII 553739 . G C 6697.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=22.25;SB=-3.704e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:6697,779,0 chrVIII 553816 . G A 8522.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=16.2541;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=23.28;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,366:366:99:8522,939,0 chrVIII 553887 . A T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=21.35;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3587,393,0 chrVIII 553895 . T C 3093 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=18.19;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3126,366,0 chrVIII 553906 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=19.48;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2857,321,0 chrVIII 553912 . G T 2946 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;QD=20.46;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2979,324,0 chrVIII 553928 . G T 2483 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=18.12;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2516,291,0 chrVIII 553982 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=16.73;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2041,234,0 chrVIII 554022 . G C 1119.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.066;DP=122;Dels=0.00;FS=159.978;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=32.58;MQ0=0;MQRankSum=-2.027;QD=9.17;ReadPosRankSum=5.572;SB=-4.017e+00 GT:AD:DP:GQ:PL 0/1:35,85:122:68:1149,0,68 chrVIII 554028 . C T 976.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.428;DP=118;Dels=0.00;FS=140.416;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=31.81;MQ0=0;MQRankSum=-4.060;QD=8.27;ReadPosRankSum=3.440;SB=2.117e-03 GT:AD:DP:GQ:PL 0/1:36,81:118:99:1006,0,127 chrVIII 554031 . C A 977.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.756;DP=113;Dels=0.00;FS=128.029;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.55;MQ0=0;MQRankSum=-2.939;QD=8.65;ReadPosRankSum=1.895;SB=0.128 GT:AD:DP:GQ:PL 0/1:34,79:113:89:1007,0,89 chrVIII 554034 . T C 117.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=118;Dels=0.00;FS=107.187;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=3.309;QD=0.99;ReadPosRankSum=-0.082;SB=-7.404e+01 GT:AD:DP:GQ:PL 0/1:84,34:118:99:147,0,1012 chrVIII 554038 . T G 846.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.354;DP=113;Dels=0.00;FS=95.460;HaplotypeScore=2.7789;MLEAC=1;MLEAF=0.500;MQ=31.69;MQ0=0;MQRankSum=-5.799;QD=7.49;ReadPosRankSum=-1.040;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:34,79:113:99:876,0,164 chrVIII 554170 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=22.41;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2252,255,0 chrVIII 554280 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=20.04;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2538,279,0 chrVIII 554287 . A G 1588.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.289;DP=137;Dels=0.00;FS=5.196;HaplotypeScore=4.8593;MLEAC=1;MLEAF=0.500;MQ=50.91;MQ0=0;MQRankSum=1.669;QD=11.59;ReadPosRankSum=-1.815;SB=-6.600e+02 GT:AD:DP:GQ:PL 0/1:42,92:137:99:1618,0,710 chrVIII 554364 . T G 6509.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.124;DP=418;Dels=0.00;FS=81.763;HaplotypeScore=8.2672;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=13.008;QD=15.57;ReadPosRankSum=15.418;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:112,305:418:99:6509,738,0 chrVIII 554379 . C T 5988.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.014;DP=450;Dels=0.00;FS=71.587;HaplotypeScore=11.3321;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=11.629;QD=13.31;ReadPosRankSum=7.209;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:127,321:450:99:5988,394,0 chrVIII 554434 . T C 4369.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.308;DP=357;Dels=0.00;FS=8.513;HaplotypeScore=9.5409;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;MQRankSum=-0.982;QD=12.24;ReadPosRankSum=1.654;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:4,353:357:99:4369,486,0 chrVIII 554435 . A T 4516.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.790;DP=354;Dels=0.00;FS=10.943;HaplotypeScore=9.5409;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;MQRankSum=-0.300;QD=12.76;ReadPosRankSum=2.652;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:3,351:354:99:4516,504,0 chrVIII 554443 . C T 4243.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=5.9240;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=11.34;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,372:374:99:4243,480,0 chrVIII 554454 . C A 5017.01 filter AC=2;AF=1.00;AN=2;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=28.1030;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=12.83;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,388:391:99:5017,558,0 chrVIII 554500 . T C 6359.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.427;DP=448;Dels=0.00;FS=5.161;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;MQRankSum=0.661;QD=14.19;ReadPosRankSum=3.435;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:4,444:448:99:6359,743,0 chrVIII 554551 . G A 6315.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.877;DP=719;Dels=0.00;FS=3.920;HaplotypeScore=42.8281;MLEAC=1;MLEAF=0.500;MQ=45.00;MQ0=5;MQRankSum=-4.537;QD=8.78;ReadPosRankSum=0.181;SB=-2.889e+03 GT:AD:DP:GQ:PL 0/1:309,407:719:99:6315,0,4677 chrVIII 554629 . C T 7494.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.391;DP=779;Dels=0.00;FS=2.212;HaplotypeScore=29.9539;MLEAC=1;MLEAF=0.500;MQ=36.60;MQ0=3;MQRankSum=1.003;QD=9.62;ReadPosRankSum=-0.611;SB=-3.114e+03 GT:AD:DP:GQ:PL 0/1:337,435:779:99:7494,0,5148 chrVIII 554653 . C A 15406.01 filter AC=2;AF=1.00;AN=2;DP=748;Dels=0.00;FS=0.000;HaplotypeScore=23.3862;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=12;QD=20.60;SB=-7.631e+03 GT:AD:DP:GQ:PL 1/1:0,747:748:99:15406,1772,0 chrVIII 554683 . T C 15179.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.252;DP=769;Dels=0.00;FS=8.892;HaplotypeScore=48.1904;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=23;MQRankSum=1.510;QD=19.74;ReadPosRankSum=3.402;SB=-8.163e+03 GT:AD:DP:GQ:PL 1/1:4,760:769:99:15179,1757,0 chrVIII 554717 . G A 7502.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.803;DP=718;Dels=0.00;FS=47.235;HaplotypeScore=25.3357;MLEAC=1;MLEAF=0.500;MQ=40.79;MQ0=52;MQRankSum=-1.394;QD=10.45;ReadPosRankSum=-0.852;SB=-2.899e+03 GT:AD:DP:GQ:PL 0/1:243,473:718:99:7502,0,3529 chrVIII 554818 . G A 6280.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.150;DP=836;Dels=0.00;FS=0.959;HaplotypeScore=190.4409;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=78;MQRankSum=-2.443;QD=7.51;ReadPosRankSum=2.316;SB=-1.230e+03 GT:AD:DP:GQ:PL 0/1:245,591:836:99:6280,0,1835 chrVIII 554826 . A G 1849.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.726;DP=813;Dels=0.00;FS=6.756;HaplotypeScore=192.9212;MLEAC=1;MLEAF=0.500;MQ=25.45;MQ0=62;MQRankSum=4.074;QD=2.27;ReadPosRankSum=-1.563;SB=-6.080e+02 GT:AD:DP:GQ:PL 0/1:575,238:813:99:1879,0,5651 chrVIII 554827 . T C 1726.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.243;DP=811;Dels=0.00;FS=6.179;HaplotypeScore=192.9212;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=61;MQRankSum=4.208;QD=2.13;ReadPosRankSum=-1.476;SB=-6.130e+02 GT:AD:DP:GQ:PL 0/1:571,235:811:99:1756,0,5742 chrVIII 554828 . G T 3149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.949;DP=779;Dels=0.00;FS=14.954;HaplotypeScore=189.9512;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=60;MQRankSum=-4.058;QD=4.04;ReadPosRankSum=3.101;SB=-7.500e+02 GT:AD:DP:GQ:PL 0/1:242,340:779:99:3179,0,2191 chrVIII 554829 . G C 5155.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.248;DP=770;Dels=0.00;FS=11.689;HaplotypeScore=185.2156;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=55;MQRankSum=-4.705;QD=6.69;ReadPosRankSum=3.526;SB=-1.237e+03 GT:AD:DP:GQ:PL 0/1:241,528:770:99:5155,0,1973 chrVIII 554836 . A G 4604.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.820;DP=771;Dels=0.00;FS=14.851;HaplotypeScore=169.7297;MLEAC=1;MLEAF=0.500;MQ=25.49;MQ0=46;MQRankSum=-5.453;QD=5.97;ReadPosRankSum=2.423;SB=-1.353e+03 GT:AD:DP:GQ:PL 0/1:236,535:771:99:4604,0,2033 chrVIII 554852 . A G 4354.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.632;DP=694;Dels=0.00;FS=1.518;HaplotypeScore=194.6495;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=45;MQRankSum=-3.732;QD=6.27;ReadPosRankSum=-1.382;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:156,536:694:99:4354,512,0 chrVIII 554886 . T C 3405.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.881;DP=660;Dels=0.00;FS=2.494;HaplotypeScore=26.3283;MLEAC=1;MLEAF=0.500;MQ=33.38;MQ0=52;MQRankSum=-11.572;QD=5.16;ReadPosRankSum=-0.822;SB=-2.157e+03 GT:AD:DP:GQ:PL 0/1:250,409:660:99:3405,0,3195 chrVIII 555074 . C A 5237.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.595;DP=784;Dels=0.00;FS=1.832;HaplotypeScore=54.4432;MLEAC=1;MLEAF=0.500;MQ=49.71;MQ0=14;MQRankSum=-1.210;QD=6.68;ReadPosRankSum=-0.531;SB=-1.528e+03 GT:AD:DP:GQ:PL 0/1:420,354:784:99:5237,0,6728 chrVIII 555139 . G T 2311.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.194;DP=903;Dels=0.00;FS=3.952;HaplotypeScore=48.3337;MLEAC=1;MLEAF=0.500;MQ=48.14;MQ0=35;MQRankSum=4.506;QD=2.56;ReadPosRankSum=1.624;SB=-9.650e+02 GT:AD:DP:GQ:PL 0/1:700,198:903:99:2341,0,13041 chrVIII 555208 . G C 15647.01 filter AC=2;AF=1.00;AN=2;DP=745;Dels=0.00;FS=0.000;HaplotypeScore=45.2768;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=25;QD=21.00;SB=-7.341e+03 GT:AD:DP:GQ:PL 1/1:0,731:745:99:15647,1785,0 chrVIII 555218 . G A 6950.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.454;DP=804;Dels=0.00;FS=0.816;HaplotypeScore=43.3460;MLEAC=1;MLEAF=0.500;MQ=49.44;MQ0=15;MQRankSum=3.569;QD=8.64;ReadPosRankSum=0.582;SB=-3.591e+03 GT:AD:DP:GQ:PL 0/1:395,404:804:99:6950,0,6316 chrVIII 555421 . T C 18500.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=924;DS;Dels=0.00;FS=9.044;HaplotypeScore=33.8309;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=45;MQRankSum=2.117;QD=20.02;ReadPosRankSum=3.368;SB=-9.924e+03 GT:AD:DP:GQ:PL 1/1:5,914:924:99:18500,2121,0 chrVIII 555454 . T C 17067.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.110;DP=931;DS;Dels=0.00;FS=42.625;HaplotypeScore=27.3362;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=64;MQRankSum=-0.447;QD=18.33;ReadPosRankSum=5.003;SB=-5.777e+03 GT:AD:DP:GQ:PL 1/1:11,917:931:99:17067,1994,0 chrVIII 555586 . T C 5496.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.079;DP=982;DS;Dels=0.00;FS=2.508;HaplotypeScore=64.2840;MLEAC=1;MLEAF=0.500;MQ=42.75;MQ0=5;MQRankSum=0.065;QD=5.60;ReadPosRankSum=-0.714;SB=-2.616e+03 GT:AD:DP:GQ:PL 0/1:551,428:982:99:5496,0,7544 chrVIII 555652 . C T 10311.01 filter AC=2;AF=1.00;AN=2;DP=665;DS;Dels=0.00;FS=0.000;HaplotypeScore=37.4340;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=67;QD=15.51;SB=-5.599e+03 GT:AD:DP:GQ:PL 1/1:0,659:665:99:10311,1144,0 chrVIII 555682 . C T 6826.01 filter AC=2;AF=1.00;AN=2;DP=619;DS;Dels=0.00;FS=0.000;HaplotypeScore=16.5828;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=73;QD=11.03;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,614:619:99:6826,771,0 chrVIII 555736 . C T 7054.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=794;Dels=0.00;FS=0.000;HaplotypeScore=11.5401;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=14;MQRankSum=-0.409;QD=8.88;ReadPosRankSum=1.106;SB=-5.119e+03 GT:AD:DP:GQ:PL 1/1:1,792:794:99:7054,798,0 chrVIII 555742 . A G 7432.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=812;Dels=0.00;FS=0.000;HaplotypeScore=7.8320;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=10;QD=9.15;SB=-5.232e+03 GT:AD:DP:GQ:PL 1/1:0,812:812:99:7432,855,0 chrVIII 555748 . C T 7821.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=816;Dels=0.00;FS=0.000;HaplotypeScore=6.1238;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=7;QD=9.58;SB=-4.825e+03 GT:AD:DP:GQ:PL 1/1:0,816:816:99:7821,876,0 chrVIII 555751 . C T 7862.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=802;Dels=0.00;FS=0.000;HaplotypeScore=7.8580;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=7;QD=9.80;SB=-4.695e+03 GT:AD:DP:GQ:PL 1/1:0,802:802:99:7862,882,0 chrVIII 555754 . T A 7954.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=783;Dels=0.00;FS=5.954;HaplotypeScore=11.9229;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=7;MQRankSum=-0.165;QD=10.16;ReadPosRankSum=1.723;SB=-4.411e+03 GT:AD:DP:GQ:PL 1/1:1,782:783:99:7954,888,0 chrVIII 555840 . G A 2924.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.313;DP=774;Dels=0.00;FS=23.188;HaplotypeScore=35.7618;MLEAC=1;MLEAF=0.500;MQ=41.90;MQ0=0;MQRankSum=-0.778;QD=3.78;ReadPosRankSum=-0.273;SB=-7.010e+02 GT:AD:DP:GQ:PL 0/1:481,293:774:99:2954,0,7518 chrVIII 555848 . A G 7630.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.296;DP=773;Dels=0.00;FS=28.111;HaplotypeScore=23.8430;MLEAC=1;MLEAF=0.500;MQ=40.27;MQ0=1;MQRankSum=1.608;QD=9.87;ReadPosRankSum=0.900;SB=-3.572e+03 GT:AD:DP:GQ:PL 0/1:278,495:773:99:7630,0,2901 chrVIII 555849 . C G 2740.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;DP=767;Dels=0.00;FS=32.294;HaplotypeScore=23.0544;MLEAC=1;MLEAF=0.500;MQ=40.26;MQ0=1;MQRankSum=-0.515;QD=3.57;ReadPosRankSum=-0.811;SB=-5.550e+02 GT:AD:DP:GQ:PL 0/1:490,270:767:99:2770,0,7537 chrVIII 555856 . A G 7149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DP=766;Dels=0.00;FS=24.114;HaplotypeScore=17.5005;MLEAC=1;MLEAF=0.500;MQ=39.35;MQ0=2;MQRankSum=1.998;QD=9.33;ReadPosRankSum=2.599;SB=-3.343e+03 GT:AD:DP:GQ:PL 0/1:272,493:766:99:7149,0,2426 chrVIII 555860 . A G 2371.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.987;DP=735;Dels=0.00;FS=45.863;HaplotypeScore=15.9392;MLEAC=1;MLEAF=0.500;MQ=38.93;MQ0=3;MQRankSum=-1.197;QD=3.23;ReadPosRankSum=-1.007;SB=-5.900e+02 GT:AD:DP:GQ:PL 0/1:492,242:735:99:2401,0,7642 chrVIII 555862 . T C,G 11026.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.157;DP=713;Dels=0.00;FS=5.194;HaplotypeScore=14.7216;MLEAC=1,1;MLEAF=0.500,0.500;MQ=38.61;MQ0=3;MQRankSum=-1.363;QD=15.46;ReadPosRankSum=3.282;SB=-4.594e+03 GT:AD:DP:GQ:PL 1/2:4,473,236:713:99:11026,3286,2299,7740,0,7309 chrVIII 555886 . A G 1844.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.703;DP=640;Dels=0.00;FS=9.832;HaplotypeScore=24.4021;MLEAC=1;MLEAF=0.500;MQ=37.99;MQ0=7;MQRankSum=-6.248;QD=2.88;ReadPosRankSum=-2.799;SB=-1.129e+03 GT:AD:DP:GQ:PL 0/1:436,203:639:99:1874,0,7153 chrVIII 555929 . C A 1889.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.744;DP=404;Dels=0.00;FS=33.197;HaplotypeScore=16.0978;MLEAC=1;MLEAF=0.500;MQ=34.20;MQ0=7;MQRankSum=-2.539;QD=4.68;ReadPosRankSum=4.569;SB=-4.490e+02 GT:AD:DP:GQ:PL 0/1:255,148:403:99:1919,0,3522 chrVIII 555953 . C T 2485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.101;DP=338;Dels=0.00;FS=19.963;HaplotypeScore=25.4228;MLEAC=1;MLEAF=0.500;MQ=36.19;MQ0=5;MQRankSum=2.096;QD=7.35;ReadPosRankSum=-0.016;SB=-1.338e+03 GT:AD:DP:GQ:PL 0/1:165,164:338:99:2515,0,2260 chrVIII 555989 . T C 1429.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;DP=269;Dels=0.00;FS=4.694;HaplotypeScore=12.9461;MLEAC=1;MLEAF=0.500;MQ=38.71;MQ0=0;MQRankSum=-3.135;QD=5.31;ReadPosRankSum=-1.791;SB=-3.230e+02 GT:AD:DP:GQ:PL 0/1:150,116:268:99:1459,0,2315 chrVIII 555991 . C A 5121.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=39.10;MQ0=0;MQRankSum=-0.780;QD=19.55;ReadPosRankSum=1.719;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:5121,579,0 chrVIII 555993 . G A 5600.01 SnpCluster AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=20.97;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5600,612,0 chrVIII 556005 . T A 6608.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=18.93;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,349:349:99:6608,735,0 chrVIII 556019 . G A 2517.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.098;DP=406;Dels=0.00;FS=40.217;HaplotypeScore=5.6077;MLEAC=1;MLEAF=0.500;MQ=43.17;MQ0=0;MQRankSum=-0.867;QD=6.20;ReadPosRankSum=0.089;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:196,208:406:99:2547,0,3181 chrVIII 556021 . T A 2728.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;DP=414;Dels=0.00;FS=41.248;HaplotypeScore=12.1179;MLEAC=1;MLEAF=0.500;MQ=43.10;MQ0=0;MQRankSum=0.066;QD=6.59;ReadPosRankSum=0.440;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:200,214:414:99:2758,0,3317 chrVIII 556076 . T A 8401.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.977;DP=411;Dels=0.00;FS=13.606;HaplotypeScore=7.6425;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=1;MQRankSum=2.336;QD=20.44;ReadPosRankSum=2.091;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:3,408:411:99:8401,954,0 chrVIII 556090 . C A 1400.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.616;DP=375;Dels=0.02;FS=0.959;HaplotypeScore=36.8370;MLEAC=1;MLEAF=0.500;MQ=41.27;MQ0=3;MQRankSum=-3.716;QD=3.73;ReadPosRankSum=-1.635;SB=-5.380e+02 GT:AD:DP:GQ:PL 0/1:246,120:367:99:1430,0,3953 chrVIII 556148 . C T 3649.01 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=22.9306;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=4;QD=20.39;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3649,428,0 chrVIII 556149 . G A 338.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;DP=180;Dels=0.00;FS=6.895;HaplotypeScore=22.0147;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=4;MQRankSum=-0.579;QD=1.88;ReadPosRankSum=1.318;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:140,39:180:99:368,0,2364 chrVIII 556163 . G A 1117.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.392;DP=167;Dels=0.00;FS=76.731;HaplotypeScore=7.5204;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=3;MQRankSum=1.405;QD=6.69;ReadPosRankSum=0.472;SB=-2.830e+02 GT:AD:DP:GQ:PL 0/1:88,77:167:99:1147,0,1339 chrVIII 556178 . A G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.405;DP=163;Dels=0.00;FS=12.874;HaplotypeScore=22.1830;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=1;MQRankSum=-1.506;QD=19.52;ReadPosRankSum=3.340;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3214,389,0 chrVIII 556188 . A C 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.472;DP=121;Dels=0.01;FS=15.293;HaplotypeScore=23.2524;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=1;MQRankSum=1.734;QD=15.77;ReadPosRankSum=-1.372;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:9,111:120:99:1941,129,0 chrVIII 556206 . G A 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=17.9833;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=1;MQRankSum=0.243;QD=0.49;ReadPosRankSum=1.066;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,16:89:74:74,0,1101 chrVIII 556208 . G A 647.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.217;DP=81;Dels=0.00;FS=87.956;HaplotypeScore=17.1512;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=1;MQRankSum=4.540;QD=7.99;ReadPosRankSum=0.112;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,46:81:99:677,0,371 chrVIII 556221 . G A 708.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;DP=77;Dels=0.00;FS=66.105;HaplotypeScore=14.2469;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=1;MQRankSum=4.065;QD=9.19;ReadPosRankSum=-0.135;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,48:77:99:738,0,248 chrVIII 556223 . T C 670.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.432;DP=73;Dels=0.00;FS=50.177;HaplotypeScore=14.2469;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=1;MQRankSum=3.466;QD=9.18;ReadPosRankSum=-1.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,49:73:99:700,0,181 chrVIII 556225 . A C,T 990.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.6546;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.44;MQ0=1;QD=13.56;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/2:0,19,54:73:90:1050,846,819,204,0,90 chrVIII 556256 . T G 936 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.978;DP=84;Dels=0.00;FS=43.981;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=1;MQRankSum=-0.185;QD=11.14;ReadPosRankSum=3.666;SB=-9.976e-03 GT:AD:DP:GQ:PL 1/1:7,77:84:34:969,34,0 chrVIII 556263 . G A 1096 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7620;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=1;QD=13.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1129,129,0 chrVIII 556264 . G A 1019 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7620;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=1;MQRankSum=-1.732;QD=12.13;ReadPosRankSum=0.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1052,101,0 chrVIII 556272 . G A 409.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.5977;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=1;MQRankSum=2.944;QD=4.70;ReadPosRankSum=0.900;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,38:87:99:439,0,434 chrVIII 556273 . C A,G 926.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.9637;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.37;MQ0=1;QD=10.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,38,47:87:99:986,476,410,510,0,447 chrVIII 556283 . G C 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;DP=126;Dels=0.00;FS=21.957;HaplotypeScore=49.8060;MLEAC=1;MLEAF=0.500;MQ=24.95;MQ0=3;MQRankSum=4.293;QD=0.56;ReadPosRankSum=2.131;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,19:126:99:100,0,1101 chrVIII 556311 . G C 1000.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;DP=137;Dels=0.00;FS=98.593;HaplotypeScore=81.1576;MLEAC=1;MLEAF=0.500;MQ=23.64;MQ0=5;MQRankSum=3.882;QD=7.30;ReadPosRankSum=-0.218;SB=-1.069e+02 GT:AD:DP:GQ:PL 0/1:55,82:137:99:1030,0,372 chrVIII 556312 . A T 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DP=140;Dels=0.00;FS=6.048;HaplotypeScore=108.7332;MLEAC=1;MLEAF=0.500;MQ=23.65;MQ0=5;MQRankSum=-1.371;QD=0.59;ReadPosRankSum=0.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,24:140:99:112,0,1299 chrVIII 556318 . T A 302.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;DP=145;Dels=0.00;FS=20.891;HaplotypeScore=108.7332;MLEAC=1;MLEAF=0.500;MQ=23.29;MQ0=5;MQRankSum=5.212;QD=2.08;ReadPosRankSum=-1.296;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:110,29:145:99:332,0,1122 chrVIII 556357 . A G 354.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.626;DP=123;Dels=0.00;FS=6.275;HaplotypeScore=44.8772;MLEAC=1;MLEAF=0.500;MQ=22.51;MQ0=2;MQRankSum=2.008;QD=2.88;ReadPosRankSum=-0.185;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:83,40:123:99:384,0,764 chrVIII 556369 . G A 829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=85;Dels=0.00;FS=15.591;HaplotypeScore=26.0641;MLEAC=2;MLEAF=1.00;MQ=21.49;MQ0=2;MQRankSum=-0.652;QD=9.75;ReadPosRankSum=0.286;SB=-2.812e+02 GT:AD:DP:GQ:PL 1/1:9,76:85:49:862,49,0 chrVIII 556370 . G A 952 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=22.4138;MLEAC=2;MLEAF=1.00;MQ=21.16;MQ0=2;QD=11.61;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:985,123,0 chrVIII 556384 . C T 353 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=13.4633;MLEAC=2;MLEAF=1.00;MQ=20.56;MQ0=1;QD=8.61;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:51:386,51,0 chrVIII 556387 . A G 261.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.549;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=27.1011;MLEAC=2;MLEAF=1.00;MQ=20.03;MQ0=1;MQRankSum=-1.006;QD=6.69;ReadPosRankSum=0.320;SB=0.163 GT:AD:DP:GQ:PL 1/1:5,32:39:23:294,23,0 chrVIII 556396 . T A 79.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=24.2612;MLEAC=1;MLEAF=0.500;MQ=20.91;MQ0=1;MQRankSum=-0.184;QD=2.72;ReadPosRankSum=-0.132;SB=-6.793e-03 GT:AD:DP:GQ:PL 0/1:16,11:29:39:109,0,39 chrVIII 556397 . T A 138.12 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.435;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=24.2612;MLEAC=2;MLEAF=1.00;MQ=20.57;MQ0=1;MQRankSum=-0.606;QD=4.93;ReadPosRankSum=0.491;SB=0.875 GT:AD:DP:GQ:PL 1/1:12,13:28:5:169,5,0 chrVIII 556420 . T G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=19.29;MQ0=0;QD=1.59;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:47,6,0 chrVIII 556481 . C T 154.06 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=0;QD=6.70;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,21:23:21:187,21,0 chrVIII 556555 . G A 38.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.799;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=14.5782;MLEAC=1;MLEAF=0.500;MQ=21.01;MQ0=1;MQRankSum=0.840;QD=1.03;ReadPosRankSum=-1.571;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:9,28:37:10:68,0,10 chrVIII 556556 . T C 31.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.453;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=14.5782;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=1;MQRankSum=1.340;QD=0.87;ReadPosRankSum=-1.642;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:9,27:36:10:61,0,10 chrVIII 556557 . A G 35.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.954;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=14.5782;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=1;MQRankSum=1.816;QD=0.98;ReadPosRankSum=-1.204;SB=-1.753e-01 GT:AD:DP:GQ:PL 0/1:6,30:36:10:65,0,10 chrVIII 556575 . T C 91.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.5297;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=1;MQRankSum=0.350;QD=2.77;ReadPosRankSum=-1.051;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:2,31:33:15:124,15,0 chrVIII 556579 . T C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.8078;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=1;MQRankSum=0.702;QD=0.87;ReadPosRankSum=-0.153;SB=0.506 GT:AD:DP:GQ:PL 0/1:4,27:31:33:57,0,33 chrVIII 556641 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrVIII 556702 . A G 76.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=6.8501;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=0;MQRankSum=0.929;QD=6.36;ReadPosRankSum=0.600;SB=-1.930e+01 GT:AD:DP:GQ:PL 0/1:4,8:12:9:106,0,9 chrVIII 556706 . G A 51.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=19.3942;MLEAC=1;MLEAF=0.500;MQ=24.52;MQ0=0;MQRankSum=-0.296;QD=5.11;ReadPosRankSum=0.546;SB=-2.088e+01 GT:AD:DP:GQ:PL 0/1:3,7:10:12:81,0,12 chrVIII 560469 . T C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.212;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.8990;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=3;MQRankSum=-1.080;QD=0.58;ReadPosRankSum=-3.023;SB=2.03 GT:AD:DP:GQ:PL 1/1:18,46:64:9:69,9,0 chrVIII 560471 . C A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.468;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.8990;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=3;MQRankSum=-0.628;QD=0.61;ReadPosRankSum=-2.990;SB=2.03 GT:AD:DP:GQ:PL 1/1:18,46:64:9:71,9,0 chrVIII 560472 . C A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.334;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.8990;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=3;MQRankSum=-0.695;QD=0.61;ReadPosRankSum=-2.956;SB=2.03 GT:AD:DP:GQ:PL 1/1:18,46:64:9:71,9,0 chrVIII 560475 . C T 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.027;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7046;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=3;MQRankSum=-1.150;QD=0.58;ReadPosRankSum=-2.534;SB=2.03 GT:AD:DP:GQ:PL 1/1:19,46:65:9:70,9,0 chrVIII 560477 . T C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.750;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5367;MLEAC=2;MLEAF=1.00;MQ=21.72;MQ0=3;MQRankSum=-1.488;QD=0.56;ReadPosRankSum=3.598;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:7,59:66:9:69,9,0 chrVIII 560496 . G T 59.51 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=2;QD=0.88;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,68:68:12:92,12,0 chrVIII 560513 . T C 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.720;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8326;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=2;MQRankSum=-0.187;QD=0.55;ReadPosRankSum=-0.933;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:3,64:67:9:69,9,0 chrVIII 560532 . G T 39.97 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.9783;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=1;QD=0.93;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:9:72,9,0 chrVIII 560543 . A C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.224;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=23.31;MQ0=0;MQRankSum=-1.416;QD=2.17;ReadPosRankSum=-2.311;SB=2.06 GT:AD:DP:GQ:PL 1/1:2,15:17:9:69,9,0 chrVIII 560544 . A C 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.945;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.8365;MLEAC=2;MLEAF=1.00;MQ=23.31;MQ0=0;MQRankSum=-0.819;QD=2.12;ReadPosRankSum=-2.457;SB=2.05 GT:AD:DP:GQ:PL 1/1:3,14:17:9:68,9,0 chrVIII 560547 . T C 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.820;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.8232;MLEAC=2;MLEAF=1.00;MQ=23.31;MQ0=0;MQRankSum=-0.820;QD=2.23;ReadPosRankSum=-2.311;SB=2.08 GT:AD:DP:GQ:PL 1/1:2,15:17:9:70,9,0 chrVIII 560604 . T G 1598 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.058;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.72;MQ0=12;MQRankSum=1.088;QD=13.54;ReadPosRankSum=-2.384;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:10,108:118:99:1631,201,0 chrVIII 560640 . G T 1799 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=7;QD=15.92;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1832,216,0 chrVIII 560649 . T C 1758 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=7;QD=15.84;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1791,216,0 chrVIII 562424 . A T 73.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=1.783;QD=4.90;ReadPosRankSum=0.425;SB=0.269 GT:AD:DP:GQ:PL 1/1:2,13:15:12:106,12,0 chrVIII 562434 . A C 68.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.240;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.248;SB=0.453 GT:AD:DP:GQ:PL 1/1:1,13:14:12:101,12,0 chrVIII 562443 . A G 75.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=4.9578;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.044;SB=4.25 GT:AD:DP:GQ:PL 1/1:1,9:10:12:108,12,0 chrVIII 562445 . A G 69.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=3.9662;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.348;QD=6.95;ReadPosRankSum=1.393;SB=2.49 GT:AD:DP:GQ:PL 1/1:1,9:10:12:102,12,0 chrVIII 562450 . T A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.421;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.368;QD=2.72;ReadPosRankSum=-0.922;SB=1.24 GT:AD:DP:GQ:PL 1/1:4,4:8:6:53,6,0 chrVIII 562458 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=12;Dels=0.00;FS=12.175;HaplotypeScore=10.6267;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=0.466;QD=1.65;ReadPosRankSum=2.637;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:5,6:12:6:51,6,0 chrX 15824 . G A 2173 filter AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=7.3973;MLEAC=2;MLEAF=1.00;MQ=15.19;MQ0=96;QD=8.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:2206,252,0 chrX 15907 . A T 447 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.46;MQ0=133;QD=2.74;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,162:163:54:480,54,0 chrX 15923 . C G 68.51 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.73;MQ0=128;QD=0.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,137:137:12:101,12,0 chrX 15961 . A G 2022 filter AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=86;QD=11.17;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,180:181:99:2055,243,0 chrX 15965 . T C 2199 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.701;DP=188;Dels=0.00;FS=18.228;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=17.57;MQ0=79;MQRankSum=-0.471;QD=11.70;ReadPosRankSum=2.310;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:5,180:188:99:2232,236,0 chrX 15983 . G A 3320.01 filter AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=19.59;MQ0=46;QD=15.59;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,211:213:99:3320,366,0 chrX 16217 . A G 533 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=14.22;MQ0=43;MQRankSum=-0.400;QD=3.27;ReadPosRankSum=2.409;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,160:163:66:566,66,0 chrX 16243 . T C 233 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.47;MQ0=22;QD=1.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,133:134:30:266,30,0 chrX 18604 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.63;MQ0=8;QD=1.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:6:49,6,0 chrX 18618 . G C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.63;MQ0=8;QD=1.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:6:48,6,0 chrX 18645 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.56;MQ0=7;QD=1.13;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:47,6,0 chrX 18808 . C G 58.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.07;MQ0=1;QD=8.36;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:91,12,0 chrX 18819 . T G 80.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=1;QD=8.92;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:113,15,0 chrX 18821 . A C 80.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.05;MQ0=1;QD=7.30;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,9:11:15:113,15,0 chrX 18842 . T C 356 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.04;MQ0=1;QD=17.80;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:389,51,0 chrX 18898 . A G 245 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=20.42;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:36:278,36,0 chrX 18900 . A G 242 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=20.17;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:36:275,36,0 chrX 18906 . A G 218 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;MQRankSum=0.000;QD=18.17;ReadPosRankSum=1.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,11:12:33:251,33,0 chrX 19089 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=1.34;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:43,6,0 chrX 19103 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrX 19291 . C G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.59;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrX 19294 . A G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.39;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:74,9,0 chrX 19296 . C T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:81,9,0 chrX 19300 . T A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:83,9,0 chrX 19302 . C G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:81,9,0 chrX 19303 . T C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:77,9,0 chrX 19309 . G A 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.39;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:84,9,0 chrX 19310 . C T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:83,9,0 chrX 19431 . T C 241 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=37.9510;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=3;MQRankSum=-0.882;QD=5.24;ReadPosRankSum=2.837;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:3,43:46:33:274,33,0 chrX 19436 . G T 364 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=39.1248;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=3;QD=7.28;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:45:397,45,0 chrX 19590 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=23.60;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2110,237,0 chrX 19709 . C A 1938 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=22.63;MQ0=35;QD=15.63;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:16,106:124:99:1971,222,0 chrX 19718 . C T 1867 filter AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=43;QD=13.73;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:19,115:136:99:1900,216,0 chrX 19766 . T C 1224 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.22;MQ0=75;QD=8.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:37,101:138:99:1257,144,0 chrX 19769 . C T 1119 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=79;QD=7.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:37,105:142:99:1152,138,0 chrX 20063 . T A 338 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.02;MQ0=30;MQRankSum=1.368;QD=4.97;ReadPosRankSum=1.641;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:1,67:68:42:371,42,0 chrX 20081 . A T 354 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.58;MQ0=24;QD=5.28;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:1,66:67:42:387,42,0 chrX 20087 . A G 342 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=15.84;MQ0=30;QD=4.17;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,80:82:42:375,42,0 chrX 20118 . T G 1685 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2104;MLEAC=2;MLEAF=1.00;MQ=22.95;MQ0=28;MQRankSum=-1.732;QD=12.30;ReadPosRankSum=1.700;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1718,195,0 chrX 20142 . T C 1322.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.039;DP=222;Dels=0.00;FS=3.172;HaplotypeScore=7.2673;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=31;MQRankSum=0.379;QD=5.95;ReadPosRankSum=1.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,111:222:99:1352,0,1564 chrX 20177 . C T 4469.01 filter AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=2.6510;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=19;QD=16.55;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,270:270:99:4469,483,0 chrX 20198 . C T 2955 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=17;MQRankSum=0.360;QD=13.19;ReadPosRankSum=-1.448;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,223:224:99:2988,336,0 chrX 20220 . A G 1445 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=167;Dels=0.00;FS=16.931;HaplotypeScore=6.8934;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=18;MQRankSum=0.187;QD=8.65;ReadPosRankSum=1.662;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,165:167:99:1478,168,0 chrX 20240 . A G 220 filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=16.17;MQ0=23;QD=1.54;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:30:253,30,0 chrX 20276 . T C 903 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=121;Dels=0.00;FS=7.520;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.47;MQ0=29;MQRankSum=0.576;QD=7.46;ReadPosRankSum=2.369;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:936,111,0 chrX 20279 . G A 1133 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.96;MQ0=30;QD=8.72;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1166,129,0 chrX 20342 . T C 1893.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.303;DP=373;Dels=0.00;FS=7.006;HaplotypeScore=24.0328;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=19;MQRankSum=-1.035;QD=5.08;ReadPosRankSum=0.846;SB=-7.810e+02 GT:AD:DP:GQ:PL 0/1:181,192:373:99:1923,0,2218 chrX 20504 . T C 236 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=12.75;MQ0=7;QD=2.38;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:3,95:99:33:269,33,0 chrX 20525 . C T 946 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.05;MQ0=6;QD=7.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:979,120,0 chrX 20528 . C G 971 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.90;MQ0=12;QD=7.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:1004,120,0 chrX 20810 . C T 287.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=15.25;MQ0=141;MQRankSum=0.781;QD=1.42;ReadPosRankSum=-0.454;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,88:202:99:317,0,601 chrX 20819 . T C 333.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=1;MLEAF=0.500;MQ=16.50;MQ0=136;MQRankSum=0.761;QD=1.62;ReadPosRankSum=-0.043;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,87:206:99:363,0,764 chrX 21076 . T C 312.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400;DP=96;Dels=0.00;FS=23.316;HaplotypeScore=3.3527;MLEAC=1;MLEAF=0.500;MQ=31.92;MQ0=0;MQRankSum=-4.254;QD=3.25;ReadPosRankSum=0.160;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:47,48:96:99:342,0,833 chrX 21101 . A G 732.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.097;DP=61;Dels=0.00;FS=1.848;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=35.25;MQ0=0;MQRankSum=-0.776;QD=12.00;ReadPosRankSum=4.371;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:20,41:61:99:762,0,106 chrX 21104 . C T 774.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.942;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=35.26;MQ0=0;MQRankSum=-0.255;QD=14.60;ReadPosRankSum=3.764;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:12,39:53:87:804,0,87 chrX 21140 . C T 1124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;MQRankSum=4.355;QD=15.83;ReadPosRankSum=1.500;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:8,63:71:94:1157,94,0 chrX 21158 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=18.78;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1761,189,0 chrX 21297 . T A 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-1.088;QD=22.56;ReadPosRankSum=1.652;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1003,114,0 chrX 21371 . A T 1075 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=26.22;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1108,123,0 chrX 21499 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=24.18;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1871,204,0 chrX 21662 . T C 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.297;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.111;QD=18.83;ReadPosRankSum=1.695;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1803,213,0 chrX 21670 . C T 1762 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.95;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1795,198,0 chrX 21859 . A G 2499 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.31;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2532,300,0 chrX 22066 . T G 2941 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=19.0084;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2974,333,0 chrX 22158 . A T 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=6.388;HaplotypeScore=7.1452;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.609;QD=23.78;ReadPosRankSum=1.685;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3520,393,0 chrX 22350 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.37;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4698,531,0 chrX 22515 . A C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.004;QD=20.40;ReadPosRankSum=1.707;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2869,327,0 chrX 22679 . C T 2284 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=23.07;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2317,261,0 chrX 22702 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=22.39;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2429,285,0 chrX 22764 . T C 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.985;QD=21.34;ReadPosRankSum=1.698;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2231,252,0 chrX 22772 . C A 2231 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.45;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2264,258,0 chrX 22827 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.87;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2181,240,0 chrX 22846 . G A 2220 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.20;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2253,255,0 chrX 22895 . T G 2300 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=22.12;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2333,270,0 chrX 22911 . A G 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;MQRankSum=-0.674;QD=21.81;ReadPosRankSum=1.668;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2388,276,0 chrX 22914 . T C 2420 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=21.80;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2453,279,0 chrX 23125 . C G 69.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.35;MQ0=0;QD=11.59;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:102,12,0 chrX 23985 . A C 518 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=11.02;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:63:551,63,0 chrX 24028 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=20.65;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1334,150,0 chrX 24072 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=20.11;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1360,147,0 chrX 24085 . G A 1134 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=21.81;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1167,126,0 chrX 24205 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=23.54;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1634,183,0 chrX 24213 . G T 1636 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=22.41;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1669,186,0 chrX 24299 . A T 1995 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=19.95;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2028,228,0 chrX 24307 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=19.87;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2000,222,0 chrX 24374 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=14.10;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2120,234,0 chrX 24432 . G A 1153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.719;DP=124;Dels=0.00;FS=88.627;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=31.64;MQ0=0;MQRankSum=0.414;QD=9.30;ReadPosRankSum=2.061;SB=-8.160e+02 GT:AD:DP:GQ:PL 0/1:39,85:124:31:1183,0,31 chrX 24438 . T C 1381 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=11.70;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1414,162,0 chrX 24440 . A C 1296 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.531;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;MQRankSum=-1.491;QD=11.27;ReadPosRankSum=1.612;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1329,153,0 chrX 24442 . T C 1370 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=117;Dels=0.00;FS=5.971;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;MQRankSum=-2.337;QD=11.71;ReadPosRankSum=2.940;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:1403,162,0 chrX 24461 . C A 1517 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;QD=12.23;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1550,174,0 chrX 24479 . A T 1881.21 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.497;DP=166;Dels=0.00;FS=104.711;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;MQRankSum=2.090;QD=11.33;ReadPosRankSum=-0.965;SB=-9.622e+02 GT:AD:DP:GQ:PL 1/1:40,126:166:16:1914,16,0 chrX 24507 . T C 287.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.344;DP=247;Dels=0.00;FS=21.977;HaplotypeScore=5.7967;MLEAC=1;MLEAF=0.500;MQ=46.13;MQ0=0;MQRankSum=-7.156;QD=1.16;ReadPosRankSum=-1.990;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:178,69:247:99:317,0,3101 chrX 24524 . C T 649.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.945;DP=275;Dels=0.00;FS=10.341;HaplotypeScore=10.4741;MLEAC=1;MLEAF=0.500;MQ=47.75;MQ0=0;MQRankSum=-9.632;QD=2.36;ReadPosRankSum=-2.816;SB=-3.980e+02 GT:AD:DP:GQ:PL 0/1:185,90:275:99:679,0,3629 chrX 24530 . T C 763.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.444;DP=285;Dels=0.00;FS=3.477;HaplotypeScore=8.8968;MLEAC=1;MLEAF=0.500;MQ=47.72;MQ0=0;MQRankSum=-10.254;QD=2.68;ReadPosRankSum=-1.155;SB=-5.500e+02 GT:AD:DP:GQ:PL 0/1:192,93:285:99:793,0,3713 chrX 24532 . G A 878.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.882;DP=290;Dels=0.00;FS=2.097;HaplotypeScore=15.9402;MLEAC=1;MLEAF=0.500;MQ=47.68;MQ0=0;MQRankSum=-11.247;QD=3.03;ReadPosRankSum=-0.891;SB=-6.450e+02 GT:AD:DP:GQ:PL 0/1:192,95:290:99:908,0,3588 chrX 24614 . C T 1926.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;DP=235;Dels=0.00;FS=3.926;HaplotypeScore=17.5799;MLEAC=1;MLEAF=0.500;MQ=47.57;MQ0=0;MQRankSum=0.241;QD=8.20;ReadPosRankSum=0.434;SB=-7.160e+02 GT:AD:DP:GQ:PL 0/1:115,117:235:99:1956,0,1946 chrX 24638 . G A 1687.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.938;DP=191;Dels=0.00;FS=5.449;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=0;MQRankSum=-1.254;QD=8.83;ReadPosRankSum=-0.271;SB=-8.260e+02 GT:AD:DP:GQ:PL 0/1:81,110:191:99:1717,0,1495 chrX 24640 . T C 3879.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=190;Dels=0.00;FS=2.569;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;MQRankSum=-0.771;QD=20.42;ReadPosRankSum=2.942;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:3879,453,0 chrX 24644 . A C 1558.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=44.86;MQ0=0;MQRankSum=-0.714;QD=7.75;ReadPosRankSum=0.722;SB=-7.400e+02 GT:AD:DP:GQ:PL 0/1:85,113:201:99:1588,0,1386 chrX 24647 . T A 1415.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;DP=204;Dels=0.00;FS=0.549;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=45.15;MQ0=0;MQRankSum=0.724;QD=6.94;ReadPosRankSum=-0.183;SB=-5.840e+02 GT:AD:DP:GQ:PL 0/1:119,85:204:99:1445,0,1753 chrX 24657 . G A 1832.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.913;DP=206;Dels=0.00;FS=2.564;HaplotypeScore=8.0168;MLEAC=1;MLEAF=0.500;MQ=44.87;MQ0=0;MQRankSum=0.763;QD=8.89;ReadPosRankSum=0.576;SB=-7.680e+02 GT:AD:DP:GQ:PL 0/1:84,119:206:99:1862,0,1471 chrX 24785 . C T 6326.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=21.66;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,287:292:99:6326,714,0 chrX 24807 . T A 6538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=286;Dels=0.00;FS=3.041;HaplotypeScore=14.9827;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;MQRankSum=0.981;QD=22.86;ReadPosRankSum=1.720;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:1,285:286:99:6538,732,0 chrX 24873 . A G 1533.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.958;DP=326;Dels=0.00;FS=2.566;HaplotypeScore=13.6907;MLEAC=1;MLEAF=0.500;MQ=41.41;MQ0=0;MQRankSum=-4.656;QD=4.70;ReadPosRankSum=0.764;SB=-8.070e+02 GT:AD:DP:GQ:PL 0/1:217,109:326:99:1563,0,4628 chrX 24887 . C T 1047.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.707;DP=310;Dels=0.00;FS=4.155;HaplotypeScore=14.3655;MLEAC=1;MLEAF=0.500;MQ=41.48;MQ0=0;MQRankSum=-5.024;QD=3.38;ReadPosRankSum=0.153;SB=-6.740e+02 GT:AD:DP:GQ:PL 0/1:213,94:310:99:1077,0,4334 chrX 24894 . T C 4094.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.472;DP=303;Dels=0.00;FS=9.955;HaplotypeScore=15.2089;MLEAC=1;MLEAF=0.500;MQ=41.33;MQ0=0;MQRankSum=4.083;QD=13.51;ReadPosRankSum=0.565;SB=-1.857e+03 GT:AD:DP:GQ:PL 0/1:91,210:303:99:4094,0,1180 chrX 24908 . G A 1078.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.773;DP=264;Dels=0.00;FS=28.504;HaplotypeScore=5.3859;MLEAC=1;MLEAF=0.500;MQ=42.08;MQ0=0;MQRankSum=-5.501;QD=4.08;ReadPosRankSum=-2.927;SB=-3.370e+02 GT:AD:DP:GQ:PL 0/1:180,84:264:99:1108,0,3482 chrX 24926 . T C 649.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.446;DP=221;Dels=0.00;FS=78.374;HaplotypeScore=8.8801;MLEAC=1;MLEAF=0.500;MQ=42.42;MQ0=0;MQRankSum=-6.933;QD=2.94;ReadPosRankSum=-1.122;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,63:221:99:679,0,2917 chrX 24935 . G A 550.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.595;DP=203;Dels=0.00;FS=118.203;HaplotypeScore=4.1480;MLEAC=1;MLEAF=0.500;MQ=42.18;MQ0=0;MQRankSum=-6.435;QD=2.71;ReadPosRankSum=0.764;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,57:203:99:580,0,2427 chrX 24938 . G A 517.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DP=201;Dels=0.00;FS=115.527;HaplotypeScore=4.1480;MLEAC=1;MLEAF=0.500;MQ=41.63;MQ0=0;MQRankSum=-6.056;QD=2.57;ReadPosRankSum=1.603;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,55:201:99:547,0,2436 chrX 24944 . A C 481.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.870;DP=199;Dels=0.00;FS=119.920;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=40.56;MQ0=0;MQRankSum=-6.746;QD=2.42;ReadPosRankSum=2.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,56:199:99:511,0,2231 chrX 24947 . A T 540.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DP=197;Dels=0.00;FS=119.034;HaplotypeScore=10.2214;MLEAC=1;MLEAF=0.500;MQ=39.79;MQ0=0;MQRankSum=-5.861;QD=2.74;ReadPosRankSum=2.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,56:197:99:570,0,2182 chrX 24968 . G A 3045 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;MQRankSum=0.283;QD=15.54;ReadPosRankSum=0.407;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3078,351,0 chrX 24971 . A G 3000 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;MQRankSum=-1.570;QD=15.62;ReadPosRankSum=1.696;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3033,339,0 chrX 24974 . A G 2819 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;MQRankSum=-1.566;QD=14.99;ReadPosRankSum=1.714;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:2852,324,0 chrX 24983 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=15.33;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2854,315,0 chrX 24986 . G C 2487 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=13.59;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2520,300,0 chrX 24996 . T G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=196;Dels=0.00;FS=12.109;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=1.096;QD=13.39;ReadPosRankSum=2.425;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:2657,309,0 chrX 25025 . A T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.9783;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=16.38;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:3588,390,0 chrX 25027 . G T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.9783;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=16.35;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:3580,387,0 chrX 25055 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=15.27;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:3511,384,0 chrX 25070 . C A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=15.57;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3597,405,0 chrX 25079 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.407;DP=230;Dels=0.00;FS=2.401;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;MQRankSum=1.133;QD=15.78;ReadPosRankSum=3.392;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:4,226:230:99:3630,414,0 chrX 25082 . T G 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=219;Dels=0.00;FS=5.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;MQRankSum=-1.558;QD=15.22;ReadPosRankSum=1.716;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:3333,381,0 chrX 25091 . G A 3033 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=15.40;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3066,345,0 chrX 25259 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=22.61;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3549,390,0 chrX 25382 . T A 3392.01 SnpCluster AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=14.56;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:3392,381,0 chrX 25384 . T C 3165 SnpCluster AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;QD=14.00;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:3198,363,0 chrX 25385 . T C 3142 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.818;DP=227;Dels=0.00;FS=4.838;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;MQRankSum=0.003;QD=13.84;ReadPosRankSum=3.804;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:5,222:227:99:3175,363,0 chrX 25394 . A G 2987 SnpCluster AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=11.81;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:3020,345,0 chrX 25397 . T A 2886 SnpCluster AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=11.64;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:2919,330,0 chrX 25400 . A T 2789 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=247;Dels=0.00;FS=4.951;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=-1.283;QD=11.29;ReadPosRankSum=1.718;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:2822,321,0 chrX 25406 . A G 2669 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=242;Dels=0.00;FS=4.647;HaplotypeScore=3.2071;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=-1.288;QD=11.03;ReadPosRankSum=1.718;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:2702,312,0 chrX 25421 . G T 2855 SnpCluster AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=11.61;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:2888,327,0 chrX 25426 . G A 2648 SnpCluster AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;QD=10.99;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:2681,300,0 chrX 25430 . C T 2462 SnpCluster AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;QD=10.61;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:2495,276,0 chrX 25433 . A T 2259 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=236;Dels=0.00;FS=3.817;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;MQRankSum=0.998;QD=9.57;ReadPosRankSum=1.688;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:2292,264,0 chrX 25436 . C T 2358 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=231;Dels=0.00;FS=3.813;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=0;MQRankSum=-0.652;QD=10.21;ReadPosRankSum=1.687;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:2391,261,0 chrX 25439 . A G 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DP=240;Dels=0.00;FS=136.835;HaplotypeScore=3.3394;MLEAC=1;MLEAF=0.500;MQ=34.13;MQ0=0;MQRankSum=-2.933;QD=0.16;ReadPosRankSum=-0.070;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,63:240:69:69,0,1825 chrX 25452 . C T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.533;DP=231;Dels=0.00;FS=73.797;HaplotypeScore=6.4942;MLEAC=1;MLEAF=0.500;MQ=38.58;MQ0=0;MQRankSum=-3.266;QD=0.37;ReadPosRankSum=-1.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,61:231:99:116,0,1982 chrX 25463 . A T 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;DP=224;Dels=0.00;FS=68.611;HaplotypeScore=6.4942;MLEAC=1;MLEAF=0.500;MQ=41.57;MQ0=0;MQRankSum=-4.789;QD=0.39;ReadPosRankSum=-0.978;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,54:224:99:117,0,2193 chrX 25484 . A G 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.386;DP=212;Dels=0.00;FS=54.617;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=47.67;MQ0=0;MQRankSum=-7.131;QD=0.33;ReadPosRankSum=1.906;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,42:212:99:99,0,2749 chrX 25562 . A G 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;DP=226;Dels=0.00;FS=63.134;HaplotypeScore=13.3963;MLEAC=1;MLEAF=0.500;MQ=47.17;MQ0=0;MQRankSum=-7.801;QD=0.65;ReadPosRankSum=-4.976;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,34:226:99:176,0,3668 chrX 25563 . A G 5060.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=232;Dels=0.00;FS=2.572;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;MQRankSum=-1.430;QD=21.81;ReadPosRankSum=2.883;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:3,228:232:99:5060,579,0 chrX 25569 . A T 269.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.081;DP=238;Dels=0.00;FS=20.395;HaplotypeScore=18.6548;MLEAC=1;MLEAF=0.500;MQ=45.42;MQ0=0;MQRankSum=-6.747;QD=1.13;ReadPosRankSum=-4.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,47:238:99:299,0,3785 chrX 25718 . A G 349.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;DP=248;Dels=0.00;FS=24.244;HaplotypeScore=15.4888;MLEAC=1;MLEAF=0.500;MQ=53.20;MQ0=0;MQRankSum=-10.817;QD=1.41;ReadPosRankSum=-3.193;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,55:248:99:379,0,3736 chrX 25720 . C T 5523.01 SnpCluster AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.9114;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=22.64;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5523,618,0 chrX 25724 . A G 238.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;DP=245;Dels=0.00;FS=36.097;HaplotypeScore=10.6336;MLEAC=1;MLEAF=0.500;MQ=53.51;MQ0=0;MQRankSum=-10.881;QD=0.97;ReadPosRankSum=-3.354;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,52:244:99:268,0,3784 chrX 25731 . C T 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.607;DP=247;Dels=0.00;FS=30.213;HaplotypeScore=13.9828;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=0;MQRankSum=-10.848;QD=0.22;ReadPosRankSum=-3.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:194,53:247:84:84,0,3741 chrX 25755 . T C 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.877;DP=251;Dels=0.00;FS=24.110;HaplotypeScore=20.3952;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=10.318;QD=16.95;ReadPosRankSum=-1.385;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:48,202:251:99:4254,215,0 chrX 25790 . A C 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DP=267;Dels=0.00;FS=4.220;HaplotypeScore=73.0008;MLEAC=1;MLEAF=0.500;MQ=53.81;MQ0=0;MQRankSum=-11.766;QD=0.05;ReadPosRankSum=-0.465;SB=-2.490e+02 GT:AD:DP:GQ:PL 0/1:204,62:267:44:44,0,3917 chrX 25805 . C T 127.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.857;DP=281;Dels=0.00;FS=2.259;HaplotypeScore=22.3771;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=0;MQRankSum=-12.018;QD=0.45;ReadPosRankSum=-3.027;SB=-4.630e+02 GT:AD:DP:GQ:PL 0/1:201,80:281:99:157,0,3930 chrX 25835 . A G 914.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.481;DP=322;Dels=0.00;FS=26.501;HaplotypeScore=17.4263;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=-13.907;QD=2.84;ReadPosRankSum=1.241;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:225,97:322:99:944,0,4631 chrX 25868 . C T 906.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.260;DP=338;Dels=0.00;FS=33.365;HaplotypeScore=17.8310;MLEAC=1;MLEAF=0.500;MQ=52.59;MQ0=0;MQRankSum=-13.608;QD=2.68;ReadPosRankSum=0.738;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:240,96:338:99:936,0,4752 chrX 25877 . G T 718.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;DP=328;Dels=0.00;FS=29.580;HaplotypeScore=15.3110;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=-13.652;QD=2.19;ReadPosRankSum=0.609;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:240,88:328:99:748,0,4795 chrX 25880 . A G 736.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;DP=324;Dels=0.00;FS=24.383;HaplotypeScore=12.9450;MLEAC=1;MLEAF=0.500;MQ=52.96;MQ0=0;MQRankSum=-13.563;QD=2.27;ReadPosRankSum=0.534;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:239,84:324:99:766,0,4845 chrX 25901 . T C 328.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.937;DP=294;Dels=0.00;FS=43.477;HaplotypeScore=17.4741;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-11.561;QD=1.12;ReadPosRankSum=-1.377;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:234,57:294:99:358,0,4926 chrX 25910 . G T 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.646;DP=256;Dels=0.00;FS=62.489;HaplotypeScore=12.4982;MLEAC=1;MLEAF=0.500;MQ=54.64;MQ0=0;MQRankSum=-10.313;QD=0.77;ReadPosRankSum=-2.793;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,47:256:99:227,0,4255 chrX 25916 . A G 269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DP=253;Dels=0.00;FS=61.685;HaplotypeScore=11.7530;MLEAC=1;MLEAF=0.500;MQ=54.19;MQ0=0;MQRankSum=-10.691;QD=1.06;ReadPosRankSum=-3.756;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,49:253:99:299,0,4062 chrX 25922 . G A 252.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.443;DP=250;Dels=0.00;FS=70.488;HaplotypeScore=11.2717;MLEAC=1;MLEAF=0.500;MQ=53.50;MQ0=0;MQRankSum=-10.439;QD=1.01;ReadPosRankSum=-5.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:193,55:250:99:282,0,3818 chrX 25970 . G T 464.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;DP=241;Dels=0.00;FS=32.578;HaplotypeScore=10.3426;MLEAC=1;MLEAF=0.500;MQ=52.72;MQ0=0;MQRankSum=-10.323;QD=1.93;ReadPosRankSum=4.521;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:186,54:241:99:494,0,3478 chrX 26108 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.79;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3421,393,0 chrX 26191 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.92;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2523,276,0 chrX 26202 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.354;QD=19.37;ReadPosRankSum=1.587;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2357,279,0 chrX 26331 . C G 2912 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.73;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2945,336,0 chrX 26365 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.46;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2436,273,0 chrX 26481 . A G 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=93;Dels=0.00;FS=2.996;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.702;QD=20.71;ReadPosRankSum=2.397;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1959,219,0 chrX 26529 . C G 1565 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=16.13;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1598,177,0 chrX 26534 . T A 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.096;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=0.611;QD=15.63;ReadPosRankSum=1.630;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1627,183,0 chrX 26567 . G T 1701 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.91;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1734,192,0 chrX 26666 . G T 1469 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.08;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1502,171,0 chrX 26695 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.35;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1720,195,0 chrX 26807 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.23;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2545,288,0 chrX 26958 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.50;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2806,315,0 chrX 26988 . T C 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;DP=146;Dels=0.00;FS=57.057;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=7.642;QD=17.79;ReadPosRankSum=4.618;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:25,121:146:99:2630,243,0 chrX 27126 . C T 1163.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.771;DP=260;Dels=0.00;FS=76.548;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=51.73;MQ0=0;MQRankSum=-9.289;QD=4.47;ReadPosRankSum=3.700;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:178,82:260:99:1193,0,3154 chrX 27168 . T G 465.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.543;DP=212;Dels=0.00;FS=41.427;HaplotypeScore=17.3756;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=0;MQRankSum=-8.329;QD=2.19;ReadPosRankSum=-0.858;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,62:212:99:495,0,2813 chrX 27169 . G A 521.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.275;DP=211;Dels=0.00;FS=37.730;HaplotypeScore=16.5869;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=0;MQRankSum=-8.916;QD=2.47;ReadPosRankSum=-1.217;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,63:211:99:551,0,2750 chrX 27178 . A T 535.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;DP=215;Dels=0.00;FS=40.960;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=52.05;MQ0=0;MQRankSum=-9.749;QD=2.49;ReadPosRankSum=-2.955;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:147,68:215:99:565,0,2991 chrX 27195 . T C 462.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;DP=207;Dels=0.00;FS=7.861;HaplotypeScore=10.3760;MLEAC=1;MLEAF=0.500;MQ=52.79;MQ0=0;MQRankSum=-10.140;QD=2.23;ReadPosRankSum=-0.297;SB=-2.700e+02 GT:AD:DP:GQ:PL 0/1:147,59:207:99:492,0,2858 chrX 27210 . C T 646.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.445;DP=205;Dels=0.00;FS=6.296;HaplotypeScore=12.6189;MLEAC=1;MLEAF=0.500;MQ=52.59;MQ0=0;MQRankSum=-9.387;QD=3.15;ReadPosRankSum=-0.139;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:137,67:205:99:676,0,2608 chrX 27287 . T C 1345.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.047;DP=308;Dels=0.00;FS=14.450;HaplotypeScore=10.9756;MLEAC=1;MLEAF=0.500;MQ=51.60;MQ0=0;MQRankSum=-6.789;QD=4.37;ReadPosRankSum=-1.302;SB=-8.300e+02 GT:AD:DP:GQ:PL 0/1:180,125:308:99:1375,0,3590 chrX 27302 . G A 1445.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.364;DP=318;Dels=0.00;FS=11.593;HaplotypeScore=11.1770;MLEAC=1;MLEAF=0.500;MQ=50.84;MQ0=0;MQRankSum=-8.159;QD=4.54;ReadPosRankSum=-0.060;SB=-1.070e+03 GT:AD:DP:GQ:PL 0/1:183,134:318:99:1475,0,3561 chrX 27316 . C T 1322.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.555;DP=311;Dels=0.00;FS=1.890;HaplotypeScore=11.1860;MLEAC=1;MLEAF=0.500;MQ=49.07;MQ0=0;MQRankSum=-8.793;QD=4.25;ReadPosRankSum=0.801;SB=-1.202e+03 GT:AD:DP:GQ:PL 0/1:178,133:311:99:1352,0,3237 chrX 27318 . C T 5863.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=14.2172;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=18.97;SB=-3.947e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:5863,651,0 chrX 27330 . G A 5820.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=16.4411;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=17.58;SB=-3.971e+03 GT:AD:DP:GQ:PL 1/1:0,329:331:99:5820,669,0 chrX 27361 . A G 1788.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;DP=331;Dels=0.00;FS=6.618;HaplotypeScore=13.4076;MLEAC=1;MLEAF=0.500;MQ=52.02;MQ0=0;MQRankSum=-8.139;QD=5.40;ReadPosRankSum=0.320;SB=-9.840e+02 GT:AD:DP:GQ:PL 0/1:183,147:331:99:1818,0,2967 chrX 27379 . T C 2845.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890;DP=330;Dels=0.00;FS=5.043;HaplotypeScore=21.7432;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=0;MQRankSum=6.511;QD=8.62;ReadPosRankSum=0.828;SB=-1.563e+03 GT:AD:DP:GQ:PL 0/1:155,175:330:99:2875,0,2140 chrX 27408 . T G 2378.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.146;DP=327;Dels=0.00;FS=10.819;HaplotypeScore=15.4200;MLEAC=1;MLEAF=0.500;MQ=55.99;MQ0=0;MQRankSum=-0.302;QD=7.27;ReadPosRankSum=1.405;SB=-8.710e+02 GT:AD:DP:GQ:PL 0/1:173,152:327:99:2408,0,3018 chrX 27429 . A T 6984.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.62;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:6984,783,0 chrX 27445 . A C 2341.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DP=330;Dels=0.00;FS=3.683;HaplotypeScore=21.6124;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=0;MQRankSum=-0.425;QD=7.09;ReadPosRankSum=-0.403;SB=-1.170e+03 GT:AD:DP:GQ:PL 0/1:163,164:330:99:2371,0,2770 chrX 27507 . A T 3131.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.179;DP=377;Dels=0.00;FS=1.701;HaplotypeScore=27.7233;MLEAC=1;MLEAF=0.500;MQ=55.96;MQ0=0;MQRankSum=-3.889;QD=8.31;ReadPosRankSum=-0.703;SB=-1.494e+03 GT:AD:DP:GQ:PL 0/1:187,190:377:99:3161,0,3314 chrX 27606 . G A 3773.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.427;DP=452;Dels=0.00;FS=4.658;HaplotypeScore=26.6974;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-0.463;QD=8.35;ReadPosRankSum=-1.262;SB=-2.045e+03 GT:AD:DP:GQ:PL 0/1:228,221:452:99:3773,0,3621 chrX 27636 . T C 3484.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;DP=451;Dels=0.00;FS=1.966;HaplotypeScore=35.1373;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=-0.081;QD=7.73;ReadPosRankSum=0.884;SB=-2.057e+03 GT:AD:DP:GQ:PL 0/1:228,220:451:99:3484,0,3519 chrX 27674 . G T 3298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.982;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=19.2416;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=-3.760;QD=8.87;ReadPosRankSum=0.194;SB=-1.732e+03 GT:AD:DP:GQ:PL 0/1:177,194:372:99:3298,0,2762 chrX 27780 . T C 3768.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.582;DP=442;Dels=0.00;FS=4.231;HaplotypeScore=22.2714;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=-0.460;QD=8.52;ReadPosRankSum=0.925;SB=-1.743e+03 GT:AD:DP:GQ:PL 0/1:224,214:442:99:3768,0,3882 chrX 27894 . G C 2691.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.063;DP=304;Dels=0.00;FS=1.365;HaplotypeScore=18.9461;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=2.298;QD=8.85;ReadPosRankSum=-0.972;SB=-1.442e+03 GT:AD:DP:GQ:PL 0/1:148,152:304:99:2721,0,2647 chrX 27906 . C A 2736.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.066;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=22.1772;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=0;MQRankSum=-0.425;QD=8.58;ReadPosRankSum=-0.822;SB=-1.476e+03 GT:AD:DP:GQ:PL 0/1:164,154:319:99:2766,0,2741 chrX 27942 . C T 2728.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DP=351;Dels=0.00;FS=12.750;HaplotypeScore=17.0257;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-2.391;QD=7.77;ReadPosRankSum=-1.034;SB=-1.165e+03 GT:AD:DP:GQ:PL 0/1:188,161:351:99:2758,0,3362 chrX 28053 . T C 2148.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.385;DP=261;Dels=0.00;FS=3.546;HaplotypeScore=17.5224;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=1.952;QD=8.23;ReadPosRankSum=-0.058;SB=-9.780e+02 GT:AD:DP:GQ:PL 0/1:135,126:261:99:2178,0,2231 chrX 28102 . T C 2669.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;DP=330;Dels=0.00;FS=7.318;HaplotypeScore=14.0727;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=0;MQRankSum=-0.378;QD=8.09;ReadPosRankSum=1.819;SB=-1.219e+03 GT:AD:DP:GQ:PL 0/1:172,158:330:99:2699,0,2743 chrX 28147 . G C 1950.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.471;DP=283;Dels=0.00;FS=10.444;HaplotypeScore=17.3510;MLEAC=1;MLEAF=0.500;MQ=56.21;MQ0=0;MQRankSum=-0.110;QD=6.89;ReadPosRankSum=0.229;SB=-1.146e+03 GT:AD:DP:GQ:PL 0/1:148,133:283:99:1980,0,2516 chrX 28161 . A G 1730.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.081;DP=267;Dels=0.00;FS=5.870;HaplotypeScore=11.7208;MLEAC=1;MLEAF=0.500;MQ=55.60;MQ0=0;MQRankSum=-0.098;QD=6.48;ReadPosRankSum=1.746;SB=-1.073e+03 GT:AD:DP:GQ:PL 0/1:144,122:267:99:1760,0,2542 chrX 28178 . C T 5543.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.01;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:5543,612,0 chrX 28244 . T C 2626.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.898;DP=306;Dels=0.00;FS=6.081;HaplotypeScore=12.6189;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=0;MQRankSum=2.278;QD=8.58;ReadPosRankSum=1.305;SB=-1.487e+03 GT:AD:DP:GQ:PL 0/1:149,156:306:99:2656,0,2457 chrX 28257 . A C 6706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=313;Dels=0.00;FS=5.747;HaplotypeScore=15.3623;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-0.610;QD=21.42;ReadPosRankSum=2.900;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:3,308:313:99:6706,753,0 chrX 28302 . G C 2141.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;DP=278;Dels=0.00;FS=4.046;HaplotypeScore=10.4194;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-0.171;QD=7.70;ReadPosRankSum=0.471;SB=-1.204e+03 GT:AD:DP:GQ:PL 0/1:144,131:278:99:2171,0,2414 chrX 28329 . C T 5314.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.8543;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.96;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5314,597,0 chrX 28380 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=21.14;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4291,471,0 chrX 28401 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=20.50;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4264,474,0 chrX 28422 . T C 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=225;Dels=0.00;FS=7.608;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.049;QD=19.42;ReadPosRankSum=2.406;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4369,495,0 chrX 28454 . T A 1259.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;DP=203;Dels=0.00;FS=87.573;HaplotypeScore=10.2706;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-1.075;QD=6.20;ReadPosRankSum=1.647;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:123,80:203:99:1289,0,1836 chrX 28461 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.364;QD=19.84;ReadPosRankSum=1.697;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3967,444,0 chrX 28530 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=23.35;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3643,402,0 chrX 28548 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=21.89;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3415,378,0 chrX 28569 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=20.92;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3004,336,0 chrX 28578 . C T 597.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.989;DP=148;Dels=0.00;FS=40.854;HaplotypeScore=7.9922;MLEAC=1;MLEAF=0.500;MQ=46.37;MQ0=0;MQRankSum=-7.116;QD=4.03;ReadPosRankSum=-0.734;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,45:148:99:627,0,1825 chrX 28581 . C T 485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=154;Dels=0.00;FS=61.344;HaplotypeScore=14.9809;MLEAC=1;MLEAF=0.500;MQ=47.33;MQ0=0;MQRankSum=-7.037;QD=3.15;ReadPosRankSum=-0.817;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,42:154:99:515,0,1875 chrX 28593 . T C 295.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.166;DP=146;Dels=0.00;FS=73.793;HaplotypeScore=10.8227;MLEAC=1;MLEAF=0.500;MQ=48.35;MQ0=0;MQRankSum=-6.402;QD=2.02;ReadPosRankSum=-3.926;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,33:146:99:325,0,2192 chrX 28596 . G A 296.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;DP=142;Dels=0.00;FS=74.298;HaplotypeScore=6.8793;MLEAC=1;MLEAF=0.500;MQ=48.58;MQ0=0;MQRankSum=-6.244;QD=2.08;ReadPosRankSum=-6.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,32:142:99:326,0,2019 chrX 28599 . C T 241.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.711;DP=141;Dels=0.00;FS=55.052;HaplotypeScore=5.4113;MLEAC=1;MLEAF=0.500;MQ=48.69;MQ0=0;MQRankSum=-7.256;QD=1.71;ReadPosRankSum=-6.307;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,29:141:99:271,0,1947 chrX 28600 . G A 258.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.274;DP=142;Dels=0.00;FS=64.651;HaplotypeScore=5.4113;MLEAC=1;MLEAF=0.500;MQ=48.58;MQ0=0;MQRankSum=-6.396;QD=1.82;ReadPosRankSum=-6.104;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,28:142:99:288,0,1995 chrX 28602 . T C 211.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.964;DP=142;Dels=0.00;FS=64.480;HaplotypeScore=4.6227;MLEAC=1;MLEAF=0.500;MQ=48.78;MQ0=0;MQRankSum=-6.364;QD=1.49;ReadPosRankSum=-6.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,28:142:99:241,0,2138 chrX 28606 . A G 204.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=147;Dels=0.00;FS=63.785;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=48.63;MQ0=0;MQRankSum=-5.978;QD=1.39;ReadPosRankSum=-7.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,28:147:99:234,0,2267 chrX 28612 . C T 2540 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.34;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2573,285,0 chrX 28745 . T C 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7518;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-1.047;QD=21.20;ReadPosRankSum=1.656;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1983,225,0 chrX 28769 . G T 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.8840;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.258;QD=21.15;ReadPosRankSum=0.627;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2021,209,0 chrX 28795 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=21.72;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1923,210,0 chrX 28824 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=20.87;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1995,231,0 chrX 28859 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=21.27;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1777,198,0 chrX 28874 . G C 1576 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=19.46;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1609,183,0 chrX 28919 . T A 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.833;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.4657;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=1.379;QD=13.45;ReadPosRankSum=1.996;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1055,120,0 chrX 28927 . G A 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.169;DP=80;Dels=0.00;FS=3.349;HaplotypeScore=7.1676;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=0.563;QD=14.86;ReadPosRankSum=0.390;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1222,138,0 chrX 29082 . C T 1258 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=19.66;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1291,144,0 chrX 29083 . G T 1265 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=19.77;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1298,144,0 chrX 29088 . A T 1319 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=18.84;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1352,150,0 chrX 29203 . C T 1874 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0721;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=20.15;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1907,213,0 chrX 29205 . G C 1653 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=18.37;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1686,192,0 chrX 29225 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=16.48;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1500,171,0 chrX 29241 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=14.26;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1174,132,0 chrX 29255 . A T 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;MQRankSum=-0.887;QD=13.50;ReadPosRankSum=1.690;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1140,126,0 chrX 29300 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=18.11;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1500,171,0 chrX 29329 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=21.21;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1772,198,0 chrX 29443 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=431.6188;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=23.97;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2598,294,0 chrX 29515 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=20.69;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1833,201,0 chrX 29538 . C G 1539 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.32;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1572,174,0 chrX 29540 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.58;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1527,174,0 chrX 29610 . C G 2619 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.64;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2652,300,0 chrX 29671 . G T 2262 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.56;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2295,258,0 chrX 29701 . C G 1743 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=21.79;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1776,204,0 chrX 29806 . A T 1741 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=7.7000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.14;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1774,201,0 chrX 29815 . G T 2003 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.45;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2036,231,0 chrX 29930 . C A 1765 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=14.9466;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.34;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1798,201,0 chrX 29943 . T C 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.203;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.075;QD=20.64;ReadPosRankSum=1.632;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1457,162,0 chrX 29944 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.58;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1453,162,0 chrX 29995 . G C 1626 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.83;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1659,189,0 chrX 30160 . G T 2007 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.07;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2040,228,0 chrX 30194 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.22;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2077,228,0 chrX 30251 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.53;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2245,246,0 chrX 30273 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.68;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1901,219,0 chrX 30288 . G T 1918 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.44;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1951,219,0 chrX 30332 . A G 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=107;Dels=0.00;FS=3.033;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-1.093;QD=18.12;ReadPosRankSum=2.404;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1972,225,0 chrX 30373 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.52;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2244,246,0 chrX 30462 . C A 3067 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=23.59;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3100,345,0 chrX 30542 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.10;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2309,264,0 chrX 30584 . G A 1930 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.71;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1963,216,0 chrX 30655 . T C 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=-0.464;QD=17.92;ReadPosRankSum=1.639;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2040,237,0 chrX 30656 . C T 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;MQRankSum=-0.031;QD=18.50;ReadPosRankSum=1.701;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2086,234,0 chrX 30667 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-1.272;QD=17.28;ReadPosRankSum=1.701;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1986,225,0 chrX 30689 . G A 1757 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=15.69;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1790,198,0 chrX 30715 . T A 1300 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=15.12;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1333,147,0 chrX 30730 . T C 1106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.393;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-1.417;QD=14.36;ReadPosRankSum=1.687;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1139,129,0 chrX 30783 . A G 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.308;QD=16.52;ReadPosRankSum=1.685;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1239,141,0 chrX 30793 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.88;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1451,165,0 chrX 30891 . T A 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=104;Dels=0.00;FS=2.949;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.438;QD=19.68;ReadPosRankSum=2.237;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2080,228,0 chrX 30927 . T C 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=92;Dels=0.00;FS=2.685;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.230;QD=20.26;ReadPosRankSum=2.287;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:1897,216,0 chrX 31175 . T A 2253 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.53;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2286,252,0 chrX 31334 . C G 1440 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=51.3741;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.28;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1473,165,0 chrX 31505 . T C 1929 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.52;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1962,225,0 chrX 31566 . A T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=25.06;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3633,405,0 chrX 31590 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=23.09;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3268,378,0 chrX 31686 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.21;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3690,417,0 chrX 31756 . A T 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=191;Dels=0.00;FS=2.684;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=-1.601;QD=19.49;ReadPosRankSum=2.424;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3723,402,0 chrX 31771 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=16.52;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3172,372,0 chrX 31796 . G A 3106 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=16.01;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3139,354,0 chrX 31798 . C G 3059 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=15.69;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3092,348,0 chrX 31824 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8367;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=12.87;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:2272,255,0 chrX 31838 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=14.04;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2349,267,0 chrX 31900 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=6.503;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.272;QD=20.92;ReadPosRankSum=2.387;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3306,375,0 chrX 31931 . A C 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=172;Dels=0.00;FS=6.973;HaplotypeScore=9.7173;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.345;QD=22.48;ReadPosRankSum=2.362;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,167:172:99:3866,444,0 chrX 31975 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.9746;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=22.67;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3741,420,0 chrX 32004 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.78;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3640,420,0 chrX 32051 . T C 3086 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.93;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3119,360,0 chrX 32429 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=3.310;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.519;QD=19.89;ReadPosRankSum=1.714;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3899,456,0 chrX 32465 . C A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.19;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3962,438,0 chrX 32957 . T A 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;MQRankSum=-1.682;QD=22.07;ReadPosRankSum=1.682;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3056,360,0 chrX 32964 . A G 2992 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=23.37;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3025,342,0 chrX 33164 . T A 2080 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=20.00;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2113,231,0 chrX 33178 . A G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;MQRankSum=-1.542;QD=16.95;ReadPosRankSum=1.656;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1575,186,0 chrX 33185 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=16.22;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1363,153,0 chrX 33198 . A G 803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;MQRankSum=-0.817;QD=11.81;ReadPosRankSum=2.377;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:96:836,96,0 chrX 33207 . G A 605 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9246;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=10.80;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:638,72,0 chrX 33243 . C T 544 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=9.71;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:577,63,0 chrX 33256 . G A 728 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=11.93;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:81:761,81,0 chrX 33291 . G C 631 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=11.47;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:75:664,75,0 chrX 33298 . G A 606 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=10.45;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:72:639,72,0 chrX 33303 . G A 526 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=10.12;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:63:559,63,0 chrX 33320 . G A 456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.7249;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;MQRankSum=-1.205;QD=9.91;ReadPosRankSum=1.055;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:54:489,54,0 chrX 33378 . T C 571 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.84;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:604,72,0 chrX 33525 . C G 1137 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=22.74;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1170,135,0 chrX 33585 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.63;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:920,102,0 chrX 33603 . A G 1054 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.96;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1087,126,0 chrX 33714 . A G 1015 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.15;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1048,120,0 chrX 34030 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.9509;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.49;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1982,222,0 chrX 34093 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.16;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2593,288,0 chrX 34438 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.16;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4464,504,0 chrX 34681 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.1437;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.54;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3317,381,0 chrX 34816 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.40;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2943,327,0 chrX 34837 . T C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=140;Dels=0.00;FS=9.316;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.130;QD=21.16;ReadPosRankSum=2.921;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2996,339,0 chrX 34903 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.34;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4138,447,0 chrX 35185 . G T 4711.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.67;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4711,528,0 chrX 35365 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.42;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4005,444,0 chrX 35419 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.03;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3425,378,0 chrX 35563 . T C 2739 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=19.99;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2772,318,0 chrX 35569 . A G 2538 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=18.66;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2571,300,0 chrX 35623 . A C 2211 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.26;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2244,255,0 chrX 35625 . G A 2283 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=16.66;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2316,252,0 chrX 35632 . G A 2272 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=16.23;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2305,258,0 chrX 35680 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.06;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3545,414,0 chrX 35863 . C T 4601.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.3294;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.20;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4601,528,0 chrX 35890 . G A 4386.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=19.94;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4386,489,0 chrX 35908 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=17.60;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4258,471,0 chrX 35923 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.77;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4246,471,0 chrX 36034 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.211;QD=21.26;ReadPosRankSum=1.695;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4060,462,0 chrX 36217 . C T 2648 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.53;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2681,309,0 chrX 36357 . A G 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.825;QD=17.52;ReadPosRankSum=1.691;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1505,174,0 chrX 36381 . G A 503 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=25.3896;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=5.47;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:63:536,63,0 chrX 36391 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.4359;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=5.63;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,102:106:69:630,69,0 chrX 36445 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8096;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.70;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2550,291,0 chrX 36481 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5716;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.86;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3626,399,0 chrX 36524 . T C 3190 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=20.2807;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.27;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3223,366,0 chrX 36583 . A G 5798.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.3329;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.29;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,244:249:99:5798,651,0 chrX 36722 . G A 9070.01 filter AC=2;AF=1.00;AN=2;DP=406;Dels=0.00;FS=0.000;HaplotypeScore=31.6293;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.34;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,400:406:99:9070,1050,0 chrX 36818 . C G 8522.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=19.4225;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.73;SB=-4.509e+03 GT:AD:DP:GQ:PL 1/1:0,371:375:99:8522,957,0 chrX 37127 . T C 6069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=330;Dels=0.00;FS=15.219;HaplotypeScore=11.6865;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-2.107;QD=18.39;ReadPosRankSum=2.979;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:3,327:330:99:6069,690,0 chrX 37895 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.68;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2913,330,0 chrX 37922 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.56;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2771,315,0 chrX 37925 . G C 2715 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=19.53;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2748,309,0 chrX 37938 . T G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=14.3728;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-2.204;QD=18.21;ReadPosRankSum=2.415;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2601,288,0 chrX 38095 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.452;QD=20.27;ReadPosRankSum=1.710;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3215,366,0 chrX 38155 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3282;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=0.518;QD=20.99;ReadPosRankSum=1.682;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2929,339,0 chrX 38229 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.96;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3283,360,0 chrX 38250 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=147;Dels=0.00;FS=5.756;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.651;QD=21.00;ReadPosRankSum=2.909;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:3,141:147:99:3120,357,0 chrX 38373 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.31;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2612,297,0 chrX 38388 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.10;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2707,300,0 chrX 38691 . A G 2158 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.75;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2191,255,0 chrX 39051 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3695,414,0 chrX 39241 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.178;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3484;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-2.249;QD=24.03;ReadPosRankSum=0.425;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3820,432,0 chrX 39393 . A C 3073 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3106,354,0 chrX 39441 . C G 2465 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.0232;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.88;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2498,288,0 chrX 39500 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=2.796;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.099;QD=22.56;ReadPosRankSum=2.415;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3236,363,0 chrX 39525 . G C 3137 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.77;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3170,372,0 chrX 39598 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=3.167;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.921;QD=22.43;ReadPosRankSum=1.683;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3240,363,0 chrX 39814 . C T 4046.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.13;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4046,441,0 chrX 40068 . T C 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.02;FS=3.655;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.717;QD=21.34;ReadPosRankSum=1.673;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1292,147,0 chrX 40100 . A T 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=60;Dels=0.00;FS=3.005;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.021;QD=19.45;ReadPosRankSum=2.327;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1200,135,0 chrX 40107 . G T 1106 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.75;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1139,126,0 chrX 40239 . T C 2919 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.16;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2952,333,0 chrX 40575 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2048,228,0 chrX 40683 . T C 2138 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.04;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2171,246,0 chrX 41107 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.11;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2797,315,0 chrX 41211 . G C 1936 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.78;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1969,222,0 chrX 41577 . T C 5022.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.69;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5022,561,0 chrX 41794 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=20.62;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1827,204,0 chrX 41803 . A G 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.154;QD=19.32;ReadPosRankSum=1.694;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1791,204,0 chrX 42451 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4114;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.01;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2840,318,0 chrX 42694 . C A 2609 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.89;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2642,297,0 chrX 42739 . A G 2376 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.84;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2409,276,0 chrX 42745 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.64;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2587,279,0 chrX 43261 . G C 2541 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.41;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2574,303,0 chrX 43354 . G T 2993 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.64;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3026,348,0 chrX 43381 . A G 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=128;Dels=0.00;FS=2.583;HaplotypeScore=10.2622;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.071;QD=20.83;ReadPosRankSum=2.897;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2699,309,0 chrX 43594 . A C 2057 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2090,240,0 chrX 43681 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.80;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2071,234,0 chrX 44482 . G C 2625 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2658,303,0 chrX 44566 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.23;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3857,438,0 chrX 44863 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.19;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3506,396,0 chrX 45922 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1710,195,0 chrX 45970 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.93;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2052,222,0 chrX 46139 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2091,237,0 chrX 46240 . T G 2878 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3593;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.16;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2911,330,0 chrX 46258 . A G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=145;Dels=0.00;FS=9.152;HaplotypeScore=6.8089;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.356;QD=19.42;ReadPosRankSum=3.096;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:4,141:145:99:2849,318,0 chrX 46312 . A G 2387 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.76;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2420,276,0 chrX 47473 . T C 1478 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=20.25;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1511,171,0 chrX 47899 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3262,369,0 chrX 48186 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.54;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2855,324,0 chrX 48515 . G C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.26;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3303,372,0 chrX 48670 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.10;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2619,297,0 chrX 48799 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.46;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3648,411,0 chrX 48931 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2551,288,0 chrX 48974 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=3.606;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.955;QD=22.73;ReadPosRankSum=1.688;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3546,399,0 chrX 49561 . T C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.601;QD=21.64;ReadPosRankSum=1.706;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2890,339,0 chrX 49768 . T C 3879.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3879,438,0 chrX 50022 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3535,387,0 chrX 50434 . A G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.200;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.696;QD=21.54;ReadPosRankSum=1.703;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2553,297,0 chrX 50613 . A C 2393 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.45;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2426,273,0 chrX 51007 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2611,294,0 chrX 51340 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1212,141,0 chrX 51976 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2680,294,0 chrX 52127 . A T 1302 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1335,153,0 chrX 52186 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.26;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1370,153,0 chrX 52237 . T C 958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=52;Dels=0.00;FS=5.528;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.485;QD=18.42;ReadPosRankSum=1.663;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:1,49:52:99:991,114,0 chrX 52312 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.67;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1203,138,0 chrX 52757 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.16;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1263,141,0 chrX 52825 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1510,165,0 chrX 52869 . T C 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.997;QD=24.08;ReadPosRankSum=1.680;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1622,183,0 chrX 52905 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1739,192,0 chrX 52932 . T C 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.577;QD=22.46;ReadPosRankSum=1.684;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1650,189,0 chrX 53177 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=14.5469;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.63;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2240,252,0 chrX 53312 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.45;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3058,351,0 chrX 53513 . A T 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.287;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.214;QD=23.12;ReadPosRankSum=1.711;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3769,414,0 chrX 53538 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.32;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3284,369,0 chrX 53550 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=16.71;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2807,306,0 chrX 53568 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=16.57;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2717,300,0 chrX 53592 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.54;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:3525,408,0 chrX 53842 . A G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.754;QD=20.98;ReadPosRankSum=1.704;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2655,300,0 chrX 53843 . C T 2639 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.62;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2672,303,0 chrX 54311 . A T 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=182;Dels=0.00;FS=7.504;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.115;QD=23.57;ReadPosRankSum=2.409;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4290,477,0 chrX 54420 . T C 4033.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.5018;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.68;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4033,456,0 chrX 54825 . G A 2078 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2111,231,0 chrX 55276 . A T 2470 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9172;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.66;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2503,270,0 chrX 55443 . C T 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.680;QD=23.31;ReadPosRankSum=-0.362;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3156,329,0 chrX 55512 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.87;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3986,456,0 chrX 55552 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.21;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3458,372,0 chrX 55566 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;DP=164;Dels=0.00;FS=3.993;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.265;QD=20.87;ReadPosRankSum=1.180;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3422,372,0 chrX 55650 . C T 4622.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.11;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4622,513,0 chrX 56177 . A G 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.072;QD=20.03;ReadPosRankSum=1.677;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1295,147,0 chrX 56320 . G A 159.06 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=9.94;SB=-2.606e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:21:192,21,0 chrX 56675 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.41;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4467,492,0 chrX 56885 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1164;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.59;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3274,375,0 chrX 57032 . T C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.310;QD=21.10;ReadPosRankSum=1.706;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2861,321,0 chrX 57103 . A G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.997;HaplotypeScore=8.8501;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.422;QD=22.20;ReadPosRankSum=1.704;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2786,315,0 chrX 57144 . T C 2497 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.10;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2530,282,0 chrX 57356 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.27;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3084,339,0 chrX 58202 . C A 3134 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.18;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3167,354,0 chrX 58607 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=4.698;HaplotypeScore=10.5155;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.558;QD=21.72;ReadPosRankSum=1.713;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3844,429,0 chrX 59035 . C G 728 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=15.17;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:87:761,87,0 chrX 59185 . T G 1294 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=19.61;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1327,159,0 chrX 59186 . T A 1305 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;QD=20.39;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1338,156,0 chrX 59187 . T A 1311 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=21.15;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1344,159,0 chrX 59202 . A G 860 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;QD=21.50;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:893,111,0 chrX 59304 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=24.79;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1570,180,0 chrX 59308 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.58;MQ0=0;QD=23.47;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1629,186,0 chrX 59376 . C T 296 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=11.38;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:36:329,36,0 chrX 59484 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.63;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1890,210,0 chrX 59496 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=18.57;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1704,189,0 chrX 59557 . T A 631 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=66.5369;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=7.60;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:72:664,72,0 chrX 59573 . A G 637 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=81.4056;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=6.92;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:75:670,75,0 chrX 59641 . A G 2699 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.42;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2732,309,0 chrX 59791 . A C 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=175;Dels=0.00;FS=8.150;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=1.370;QD=22.78;ReadPosRankSum=2.421;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3986,444,0 chrX 60064 . A T 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.103;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.203;QD=22.23;ReadPosRankSum=1.696;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4224,468,0 chrX 60675 . T A 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=101;Dels=0.00;FS=9.564;HaplotypeScore=29.1533;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=1.750;QD=14.54;ReadPosRankSum=2.831;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1502,168,0 chrX 60697 . G T 57.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;DP=110;Dels=0.05;FS=6.121;HaplotypeScore=31.5120;MLEAC=1;MLEAF=0.500;MQ=51.14;MQ0=0;MQRankSum=4.625;QD=0.52;ReadPosRankSum=3.306;SB=-6.260e+02 GT:AD:DP:GQ:PL 0/1:25,80:105:70:87,0,70 chrX 60979 . T A 4270.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.9570;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.12;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4270,468,0 chrX 61260 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.495;QD=21.88;ReadPosRankSum=1.716;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4595,537,0 chrX 61449 . A G 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=208;Dels=0.00;FS=2.953;HaplotypeScore=11.7329;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.600;QD=21.07;ReadPosRankSum=2.355;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4382,498,0 chrX 61680 . C T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.46;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3563,390,0 chrX 61713 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.60;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3775,417,0 chrX 61813 . C A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.66;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3257,366,0 chrX 61814 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.06;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3412,375,0 chrX 61833 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=169;Dels=0.00;FS=2.580;HaplotypeScore=6.9129;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.315;QD=19.50;ReadPosRankSum=2.959;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3295,372,0 chrX 61926 . T A 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=3.822;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.476;QD=22.82;ReadPosRankSum=1.712;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4016,450,0 chrX 62016 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;DP=207;Dels=0.00;FS=5.234;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.173;QD=21.04;ReadPosRankSum=3.359;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:4,203:207:99:4356,495,0 chrX 62065 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=4.102;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.808;QD=19.41;ReadPosRankSum=1.713;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3493,396,0 chrX 62076 . C G 3066 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.47;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3099,348,0 chrX 62571 . A G 5678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=267;Dels=0.00;FS=11.154;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.357;QD=21.27;ReadPosRankSum=2.906;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:5678,663,0 chrX 62857 . A G 4291.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4291,492,0 chrX 63405 . T C 4343.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.5705;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.29;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4343,486,0 chrX 63597 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.71;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3485,378,0 chrX 64213 . C T 4602.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.9395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4602,501,0 chrX 64516 . A G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3918,444,0 chrX 64596 . T A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3583,402,0 chrX 65469 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.8443;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.44;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3343,372,0 chrX 65514 . C G 2656 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.59;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,125:129:99:2689,312,0 chrX 65790 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.10;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3615,411,0 chrX 65971 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3016,342,0 chrX 66305 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.0189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.13;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3354,369,0 chrX 66411 . A G 2307 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.18;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2340,267,0 chrX 66738 . A G 3039 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3072,345,0 chrX 67153 . T C 4800.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.08;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4800,543,0 chrX 67353 . G A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.04;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3663,402,0 chrX 67377 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.42;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3161,354,0 chrX 67380 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.38;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3029,336,0 chrX 67416 . A G 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.157;DP=118;Dels=0.00;FS=4.933;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.127;QD=17.91;ReadPosRankSum=3.322;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:4,113:118:99:2146,246,0 chrX 67457 . A G 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.258;QD=20.58;ReadPosRankSum=1.695;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1988,225,0 chrX 67774 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.701;QD=23.68;ReadPosRankSum=1.545;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2685,297,0 chrX 67836 . A T 2975 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.79;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3008,336,0 chrX 68090 . T C 8264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=13.7624;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.630;QD=24.31;ReadPosRankSum=1.722;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:1,338:340:99:8264,927,0 chrX 68261 . G A 7460.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=21.9728;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.81;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:0,327:327:99:7460,811,0 chrX 68438 . T C 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=225;Dels=0.00;FS=4.049;HaplotypeScore=13.2800;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.729;QD=20.05;ReadPosRankSum=1.685;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,220:225:99:4511,516,0 chrX 68659 . C A 2713 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.88;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2746,303,0 chrX 68967 . A C 4010.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4010,456,0 chrX 69094 . T C 2518 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2551,291,0 chrX 69155 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2761,315,0 chrX 69275 . A T 3076 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.2274;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.21;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3109,339,0 chrX 69503 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=188;Dels=0.00;FS=7.406;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.241;QD=21.77;ReadPosRankSum=2.344;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4092,462,0 chrX 69523 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.45;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4602,516,0 chrX 69580 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=195;Dels=0.00;FS=3.358;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.341;QD=20.86;ReadPosRankSum=1.714;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4068,456,0 chrX 69760 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.10;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4110,468,0 chrX 69814 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8725;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.616;QD=22.18;ReadPosRankSum=1.635;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3970,456,0 chrX 70030 . T C 3948.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.69;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3948,450,0 chrX 70072 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.49;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3353,378,0 chrX 70786 . G A 1861 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.70;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1894,210,0 chrX 70825 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.66;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2004,225,0 chrX 71014 . T A 1461 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=59.0458;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.01;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1494,165,0 chrX 71043 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=19.52;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1751,189,0 chrX 71087 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=18.61;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1875,210,0 chrX 71097 . A G 1811 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=18.48;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1844,207,0 chrX 71156 . A G 1210 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=10.80;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1243,144,0 chrX 71177 . G A 35.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DP=116;Dels=0.00;FS=3.954;HaplotypeScore=1.9248;MLEAC=1;MLEAF=0.500;MQ=38.75;MQ0=0;MQRankSum=-1.527;QD=0.30;ReadPosRankSum=-3.846;SB=-3.707e+01 GT:AD:DP:GQ:PL 0/1:110,6:116:15:65,0,15 chrX 71182 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=11.01;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1321,150,0 chrX 71728 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.95;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2777,306,0 chrX 72040 . C T 3162 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3195,360,0 chrX 72544 . G C 2822 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.22;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2855,324,0 chrX 72705 . T G 1980 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2013,228,0 chrX 72884 . A T 2477 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.17;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2510,276,0 chrX 73067 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3237,375,0 chrX 73190 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.35;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3755,417,0 chrX 73368 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.20;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3863,420,0 chrX 73391 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=3.362;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.404;QD=21.27;ReadPosRankSum=1.713;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3871,447,0 chrX 73708 . C A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=24.68;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3356,366,0 chrX 73732 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.33;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2934,324,0 chrX 73745 . G A 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6971;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.290;QD=20.37;ReadPosRankSum=-1.511;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2925,306,0 chrX 74010 . T A 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=3.087;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.671;QD=23.80;ReadPosRankSum=1.702;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2746,303,0 chrX 74077 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.352;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.102;QD=22.92;ReadPosRankSum=1.706;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3058,345,0 chrX 74423 . A G 5447.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=12.4357;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.63;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5447,638,0 chrX 74530 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.86;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3247,363,0 chrX 74572 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.57;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3847,444,0 chrX 74857 . T G 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.650;QD=22.05;ReadPosRankSum=1.701;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2525,300,0 chrX 74884 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.57;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2674,288,0 chrX 74905 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.87;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3121,339,0 chrX 74988 . G A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.42;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3946,462,0 chrX 75066 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.59;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3933,447,0 chrX 75075 . G A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.63;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4174,456,0 chrX 75279 . A T 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.940;QD=20.60;ReadPosRankSum=1.707;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2917,324,0 chrX 75337 . A T 2917 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=20.84;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2950,324,0 chrX 75340 . C T 2882 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=20.59;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2915,321,0 chrX 75343 . G C 2675 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=18.97;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2708,309,0 chrX 75366 . C G 2756 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=20.57;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2789,321,0 chrX 75400 . T A 1954 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.9995;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.97;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1987,225,0 chrX 75467 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.10;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1867,213,0 chrX 75537 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=22.17;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2095,228,0 chrX 75559 . T G 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=3.415;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=-0.616;QD=19.25;ReadPosRankSum=1.694;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1785,204,0 chrX 75669 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.61;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2441,267,0 chrX 75699 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.18;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2151,252,0 chrX 75869 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.379;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.192;QD=23.95;ReadPosRankSum=1.655;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3267,369,0 chrX 76676 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.87;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1179,141,0 chrX 76754 . C A 1275 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.52;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1308,144,0 chrX 77140 . T G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=152;Dels=0.00;FS=2.990;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.336;QD=22.74;ReadPosRankSum=2.417;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3457,390,0 chrX 77203 . A G 3058 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.34;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3091,351,0 chrX 78874 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.7260;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.56;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4074,465,0 chrX 79092 . G A 4373.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4373,492,0 chrX 79138 . C T 4226.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4226,465,0 chrX 79551 . A C 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=108;Dels=0.00;FS=3.351;HaplotypeScore=96.9805;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.915;QD=21.24;ReadPosRankSum=1.699;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2327,264,0 chrX 79607 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.05;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1690,195,0 chrX 79611 . T C 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=90;Dels=0.02;FS=3.003;HaplotypeScore=15.6464;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-1.666;QD=18.91;ReadPosRankSum=2.394;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1735,198,0 chrX 79717 . A C 3096 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.76;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3129,354,0 chrX 79806 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=16.05;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1895,213,0 chrX 79812 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=15.27;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1759,195,0 chrX 79831 . T C 1329 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;MQRankSum=-1.579;QD=11.76;ReadPosRankSum=1.701;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1362,156,0 chrX 79835 . A C 1315 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.531;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;MQRankSum=-0.045;QD=11.24;ReadPosRankSum=1.702;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:1348,153,0 chrX 79840 . T C 1421 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=11.84;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1454,165,0 chrX 80055 . T A 2231 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=20.85;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2264,252,0 chrX 80196 . C T 2251 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=21.44;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2284,261,0 chrX 80203 . G C 2149 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=20.27;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2182,252,0 chrX 80208 . A G 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=3.345;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;MQRankSum=-0.545;QD=18.84;ReadPosRankSum=1.700;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2087,243,0 chrX 80223 . T C 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.177;DP=131;Dels=0.00;FS=8.335;HaplotypeScore=8.7240;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-1.652;QD=18.52;ReadPosRankSum=3.391;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2459,285,0 chrX 80279 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.69;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3449,381,0 chrX 80313 . C A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.43;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3409,375,0 chrX 80358 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=19.13;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2310,258,0 chrX 80366 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=16.56;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2136,243,0 chrX 80376 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=17.17;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2213,249,0 chrX 80433 . C T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.74;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3277,363,0 chrX 80439 . T C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=180;Dels=0.00;FS=9.179;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-2.169;QD=17.37;ReadPosRankSum=3.382;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:3159,369,0 chrX 80673 . C G 4734.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.44;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4734,546,0 chrX 80742 . G A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.0601;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.51;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4367,486,0 chrX 80935 . A G 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=191;Dels=0.00;FS=9.142;HaplotypeScore=15.5474;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.084;QD=22.26;ReadPosRankSum=2.424;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4251,489,0 chrX 81028 . A G 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=3.276;HaplotypeScore=9.8415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.355;QD=22.98;ReadPosRankSum=1.698;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4641,531,0 chrX 81358 . A C 4959.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.7147;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.92;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4959,567,0 chrX 81387 . C A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8857;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.86;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4132,453,0 chrX 81409 . T A 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=186;Dels=0.00;FS=3.719;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=1.266;QD=18.90;ReadPosRankSum=1.695;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3515,393,0 chrX 81757 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.45;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1985,219,0 chrX 81758 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.30;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1993,225,0 chrX 81974 . A T 1042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-0.256;QD=17.08;ReadPosRankSum=1.675;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1075,120,0 chrX 81975 . T G 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-0.596;QD=17.23;ReadPosRankSum=1.675;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1084,123,0 chrX 82055 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=16.06;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1768,207,0 chrX 82182 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=22.21;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2454,282,0 chrX 82254 . C A 3146 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.83;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3179,354,0 chrX 82439 . T C 2342 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2375,267,0 chrX 82538 . G C 2956 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.53;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,140:144:99:2989,342,0 chrX 82557 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.68;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2981,324,0 chrX 82785 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.561;HaplotypeScore=8.8032;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.639;QD=23.03;ReadPosRankSum=1.691;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3892,444,0 chrX 82809 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.18;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3593,411,0 chrX 82930 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.97;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4045,447,0 chrX 82983 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.26;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3785,417,0 chrX 82997 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.17;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3348,384,0 chrX 83057 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=153;Dels=0.00;FS=9.556;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.770;QD=19.25;ReadPosRankSum=2.941;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:2978,336,0 chrX 83207 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.93;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3197,363,0 chrX 83271 . G C 2908 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.03;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2941,330,0 chrX 83298 . G A 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.3080;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.218;QD=22.56;ReadPosRankSum=1.706;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3079,336,0 chrX 83446 . C T 5023.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.9813;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.27;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5023,567,0 chrX 83621 . G A 5316.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.53;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5316,594,0 chrX 83690 . T A 5167.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.87;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5167,591,0 chrX 83747 . A T 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.990;QD=22.27;ReadPosRankSum=1.694;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4054,453,0 chrX 83804 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.8058;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.55;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3834,429,0 chrX 83877 . A G 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=121.7175;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.061;QD=20.02;ReadPosRankSum=1.708;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2896,324,0 chrX 83895 . C A 2460 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=16.97;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2493,276,0 chrX 83937 . T A 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=144;Dels=0.02;FS=0.000;HaplotypeScore=15.9807;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.651;QD=13.63;ReadPosRankSum=1.708;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:1996,222,0 chrX 83981 . C G 2802 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.89;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2835,327,0 chrX 84062 . G T 2288 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.11;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2321,252,0 chrX 84655 . T C 2955 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2988,336,0 chrX 84848 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=16.9712;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.165;QD=22.31;ReadPosRankSum=2.355;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,154:159:99:3548,402,0 chrX 85363 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.68;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1956,222,0 chrX 85430 . A T 408 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=11.33;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:48:441,48,0 chrX 85456 . G A 510 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=8.50;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:63:543,63,0 chrX 85459 . A G 524 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=8.45;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:62:66:557,66,0 chrX 85607 . G C 2097 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.10;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2130,249,0 chrX 85656 . T A 2877 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=23.58;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2910,324,0 chrX 85671 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.85;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2732,315,0 chrX 85773 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.54;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3053,336,0 chrX 85992 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.19;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3411,393,0 chrX 86001 . T G 3051 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.34;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3084,354,0 chrX 86090 . T C 2301 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.34;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2334,267,0 chrX 86192 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.05;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2745,303,0 chrX 86271 . T A 2245 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.45;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2278,249,0 chrX 86328 . A T 2563 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.01;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2596,291,0 chrX 86329 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.60;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2526,288,0 chrX 86358 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.29;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2348,261,0 chrX 86454 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.65;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2871,321,0 chrX 86567 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=3.699;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.686;QD=23.06;ReadPosRankSum=1.709;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3459,365,0 chrX 86592 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8668;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.02;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2934,333,0 chrX 86690 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.87;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3430,375,0 chrX 86831 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.659;QD=20.66;ReadPosRankSum=1.635;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2987,333,0 chrX 86832 . A G 2988 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.75;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3021,342,0 chrX 86967 . G T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.6802;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.65;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3738,411,0 chrX 87022 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.52;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3006,339,0 chrX 87172 . A G 4406.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.49;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4406,507,0 chrX 87183 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=215;Dels=0.00;FS=15.667;HaplotypeScore=11.3248;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.338;QD=19.51;ReadPosRankSum=2.892;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:4194,495,0 chrX 87390 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.89;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3928,432,0 chrX 87652 . A G 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=3.583;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.058;QD=22.74;ReadPosRankSum=1.693;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,88:91:99:2102,234,0 chrX 87664 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.22;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2053,228,0 chrX 87688 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.35;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1997,219,0 chrX 87958 . G A 2856 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.00;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2889,324,0 chrX 87976 . A G 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.169;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.710;QD=19.55;ReadPosRankSum=1.707;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2770,318,0 chrX 88021 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.57;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3640,405,0 chrX 88033 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.6903;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.223;QD=20.04;ReadPosRankSum=1.713;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3628,408,0 chrX 88303 . A T 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=160;Dels=0.00;FS=9.618;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.013;QD=21.78;ReadPosRankSum=2.881;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3485,393,0 chrX 88714 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2482,288,0 chrX 89050 . G A 1250 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.83;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1283,141,0 chrX 89273 . T C 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.863;QD=22.26;ReadPosRankSum=3.553;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:5,64:69:99:1569,183,0 chrX 90197 . G C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.77;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4049,453,0 chrX 90410 . G C 3364.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.16;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3364,390,0 chrX 90432 . T A 2500 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.66;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2533,285,0 chrX 90441 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=17.20;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2234,246,0 chrX 90473 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.18;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2315,261,0 chrX 90680 . T G 3449.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.99;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3449,387,0 chrX 90733 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=154;Dels=0.00;FS=3.007;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.249;QD=23.27;ReadPosRankSum=2.353;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3583,408,0 chrX 91114 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=172;Dels=0.00;FS=5.693;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.689;QD=22.00;ReadPosRankSum=2.958;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:3,165:172:99:3784,429,0 chrX 91153 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.89;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2791,315,0 chrX 91264 . A G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.689;QD=22.36;ReadPosRankSum=1.690;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1889,213,0 chrX 91730 . G A 652 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.15;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:685,75,0 chrX 91817 . A T 157.06 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=10.47;SB=-2.706e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:21:190,21,0 chrX 92203 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=126;Dels=0.00;FS=3.809;HaplotypeScore=4.8830;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.649;QD=21.13;ReadPosRankSum=1.704;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2695,306,0 chrX 92413 . T A 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=3.821;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.221;QD=20.56;ReadPosRankSum=1.622;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1966,216,0 chrX 92485 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.10;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2796,321,0 chrX 92512 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.87;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2754,318,0 chrX 92630 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.637;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0454;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.307;QD=23.68;ReadPosRankSum=-0.235;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3671,399,0 chrX 92800 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.472;QD=21.68;ReadPosRankSum=1.710;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3338,390,0 chrX 93000 . A T 2584 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.28;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2617,294,0 chrX 93181 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.75;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3026,330,0 chrX 93538 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.28;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2365,267,0 chrX 93553 . C A 2571 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.97;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2604,291,0 chrX 93850 . G A 5057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=3.301;HaplotypeScore=14.4444;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.609;QD=23.30;ReadPosRankSum=-0.898;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:5057,576,0 chrX 94118 . T C 6470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=296;Dels=0.00;FS=8.369;HaplotypeScore=11.0005;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.014;QD=21.86;ReadPosRankSum=3.318;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:4,287:296:99:6470,729,0 chrX 94327 . A G 8308.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=408;Dels=0.00;FS=3.830;HaplotypeScore=27.6651;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.456;QD=20.36;ReadPosRankSum=1.689;SB=-4.082e+03 GT:AD:DP:GQ:PL 1/1:1,402:408:99:8308,974,0 chrX 94494 . C T 9059.01 filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=29.8017;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.99;SB=-4.760e+03 GT:AD:DP:GQ:PL 1/1:0,392:394:99:9059,1011,0 chrX 95022 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=171;Dels=0.00;FS=3.026;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.640;QD=19.99;ReadPosRankSum=2.406;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3419,390,0 chrX 95024 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.60;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3522,387,0 chrX 95205 . T C 5835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=253;Dels=0.00;FS=2.565;HaplotypeScore=12.9467;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.504;QD=23.06;ReadPosRankSum=2.933;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:3,250:253:99:5835,675,0 chrX 96041 . A T 1710 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1743,189,0 chrX 96194 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.87;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2850,315,0 chrX 96323 . G A 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;DP=162;Dels=0.00;FS=3.529;HaplotypeScore=14.7261;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.520;QD=22.36;ReadPosRankSum=-1.537;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3622,382,0 chrX 96365 . C A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.8874;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.94;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4126,453,0 chrX 96379 . C T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.03;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4027,438,0 chrX 96432 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.405;QD=19.38;ReadPosRankSum=1.683;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4167,477,0 chrX 96721 . C T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5270;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.04;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3587,414,0 chrX 96738 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1047;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.49;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3782,411,0 chrX 96767 . T G 3168 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.44;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3201,360,0 chrX 96780 . C A 2999 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.22;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3032,333,0 chrX 96918 . G T 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.620;HaplotypeScore=8.2799;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;MQRankSum=1.039;QD=23.71;ReadPosRankSum=0.753;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3462,378,0 chrX 96949 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=21.56;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2146,240,0 chrX 97011 . A G 977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-0.985;QD=19.16;ReadPosRankSum=1.664;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1010,114,0 chrX 97063 . C T 1777 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=21.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1810,195,0 chrX 97082 . G C 1609 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=18.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1642,198,0 chrX 97085 . A G 1710 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.604;DP=149;Dels=0.00;FS=414.227;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;MQRankSum=-1.101;QD=11.48;ReadPosRankSum=10.480;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:67,82:149:99:1743,198,0 chrX 97092 . T A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;MQRankSum=-3.003;QD=0.40;ReadPosRankSum=3.175;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:4,78:82:9:65,9,0 chrX 97192 . G T 1856 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.91;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1889,207,0 chrX 97211 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.48;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1945,219,0 chrX 97478 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.03;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3877,447,0 chrX 97697 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.50;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5006,558,0 chrX 98106 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.2796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4032,438,0 chrX 99116 . G C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4728;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.92;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3792,429,0 chrX 99372 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1334,150,0 chrX 99941 . A G 5497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=250;Dels=0.00;FS=3.028;HaplotypeScore=8.1585;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.245;QD=21.99;ReadPosRankSum=1.704;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5497,624,0 chrX 99962 . G A 5591.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=7.6425;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.42;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5591,627,0 chrX 100224 . C T 4799.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.85;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4799,531,0 chrX 100496 . G A 5971.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=20.0396;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.79;SB=-3.178e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5971,651,0 chrX 101106 . T A 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=3.979;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;MQRankSum=-1.509;QD=20.69;ReadPosRankSum=1.633;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2929,327,0 chrX 101339 . G C 3458.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.45;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3458,390,0 chrX 101966 . C G 2651 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.07;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2684,306,0 chrX 102363 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.51;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2892,312,0 chrX 102425 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.85;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2611,288,0 chrX 102662 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.56;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3440,393,0 chrX 103255 . T C 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.233;QD=22.20;ReadPosRankSum=1.706;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2985,342,0 chrX 103352 . A G 2856 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.00;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2889,324,0 chrX 103477 . C T 4431.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.61;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4431,486,0 chrX 103478 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=3.645;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.959;QD=20.61;ReadPosRankSum=1.715;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4246,483,0 chrX 103601 . A G 3112 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.07;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3145,366,0 chrX 104033 . A G 5067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.221;DP=247;Dels=0.00;FS=9.127;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.568;QD=20.51;ReadPosRankSum=3.320;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:4,243:247:99:5067,582,0 chrX 104395 . C T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.48;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3710,408,0 chrX 104669 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.8344;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.98;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2802,309,0 chrX 104685 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.90;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3055,336,0 chrX 105490 . G A 5056.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.30;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5056,552,0 chrX 105643 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.40;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4479,507,0 chrX 105664 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.4787;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.72;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4165,468,0 chrX 105718 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.26;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3636,399,0 chrX 105829 . G A 4270.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.57;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4270,486,0 chrX 106108 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.03;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2743,300,0 chrX 106326 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=23.41;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2702,309,0 chrX 106893 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.732;QD=23.42;ReadPosRankSum=2.795;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:4,110:114:99:2703,303,0 chrX 106919 . T G 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.912;QD=24.03;ReadPosRankSum=1.641;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2772,312,0 chrX 107092 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.82;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3469,405,0 chrX 107239 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3001,333,0 chrX 107485 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3771,417,0 chrX 107557 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.3726;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.59;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4015,453,0 chrX 107864 . C A 5110.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.69;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5110,558,0 chrX 107995 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.6065;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.79;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4157,477,0 chrX 108091 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=206;Dels=0.00;FS=2.981;HaplotypeScore=16.1737;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.403;QD=20.40;ReadPosRankSum=2.425;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4202,480,0 chrX 108143 . A G 2928 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.92;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2961,339,0 chrX 108247 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.01;FS=0.000;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=18.70;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3722,411,0 chrX 108259 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.14;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3540,396,0 chrX 108616 . C T 4542.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.41;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4542,504,0 chrX 108688 . A G 4563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=1.204;QD=22.04;ReadPosRankSum=1.431;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:2,203:207:99:4563,525,0 chrX 108712 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=186;Dels=0.00;FS=6.991;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.109;QD=20.11;ReadPosRankSum=2.423;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3740,426,0 chrX 108722 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.98;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3713,405,0 chrX 108784 . G A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.58;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4240,480,0 chrX 108954 . G T 4514.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.39;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4514,495,0 chrX 109360 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.732;QD=18.65;ReadPosRankSum=1.703;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2234,255,0 chrX 109481 . T A 1248 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.20;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1281,141,0 chrX 109926 . A T 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.941;DP=87;Dels=0.00;FS=2.614;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.918;QD=16.63;ReadPosRankSum=2.518;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1480,168,0 chrX 110584 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.79;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3082,345,0 chrX 110925 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.574;QD=21.29;ReadPosRankSum=1.709;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3278,369,0 chrX 111085 . A T 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.691;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.615;QD=20.81;ReadPosRankSum=1.704;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2614,288,0 chrX 111089 . T G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.912;QD=19.10;ReadPosRankSum=1.626;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2535,288,0 chrX 111248 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.9764;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.21;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3193,354,0 chrX 111316 . A T 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.510;DP=124;Dels=0.00;FS=9.135;HaplotypeScore=4.9130;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.233;QD=18.19;ReadPosRankSum=2.553;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2288,258,0 chrX 111317 . T A 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.062;DP=124;Dels=0.00;FS=9.072;HaplotypeScore=4.9130;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-2.044;QD=17.98;ReadPosRankSum=2.652;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2263,255,0 chrX 111784 . C G 5259.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.64;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5259,594,0 chrX 111801 . G A 5505.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=6.6383;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.20;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5505,606,0 chrX 111968 . G A 6514.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=24.0295;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.04;SB=-3.425e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6514,709,0 chrX 112070 . A G 5792.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.5017;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.93;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5792,657,0 chrX 112239 . A G 5067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=223;Dels=0.00;FS=5.708;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.407;QD=22.72;ReadPosRankSum=2.941;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:3,219:223:99:5067,588,0 chrX 112731 . G A 5888.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.47;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5888,654,0 chrX 112791 . T C 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=222;Dels=0.00;FS=6.078;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.532;QD=20.57;ReadPosRankSum=2.941;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:4567,525,0 chrX 112938 . T A 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=238;Dels=0.00;FS=10.985;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.591;QD=18.38;ReadPosRankSum=2.954;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:3,235:238:99:4375,483,0 chrX 112965 . T C 3820.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.59;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3820,444,0 chrX 112991 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.95;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4001,450,0 chrX 113314 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.54;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2632,297,0 chrX 113443 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.75;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2149,237,0 chrX 113505 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=15.51;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1150,129,0 chrX 113559 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.85;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1326,153,0 chrX 113657 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.44;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:96:871,96,0 chrX 113712 . C T 392 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.60;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:425,48,0 chrX 113716 . A G 363 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=17.29;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:45:396,45,0 chrX 114082 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.21;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3442,387,0 chrX 115201 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.13;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3909,438,0 chrX 115860 . A T 3148 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3181,351,0 chrX 116030 . A G 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.585;QD=22.22;ReadPosRankSum=1.695;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2144,255,0 chrX 116802 . C A 2640 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.56;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2673,294,0 chrX 116822 . G T 2747 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.98;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2780,303,0 chrX 116906 . T G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=129;Dels=0.00;FS=4.260;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.027;QD=20.73;ReadPosRankSum=1.651;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2707,306,0 chrX 116986 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.71;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1941,210,0 chrX 117184 . G C 1921 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.87;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1954,225,0 chrX 117205 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.88;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2252,249,0 chrX 117295 . A T 2277 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.48;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2310,261,0 chrX 117715 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.50;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2247,246,0 chrX 117792 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1367;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.88;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2965,330,0 chrX 118010 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.52;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4364,474,0 chrX 118430 . T C 4943.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.47;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4943,576,0 chrX 118694 . G A 4589.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.0077;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.06;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4589,501,0 chrX 118772 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.85;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3857,438,0 chrX 118793 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.02;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3501,396,0 chrX 118832 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.41;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3339,363,0 chrX 118865 . T C 2900 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.57;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2933,330,0 chrX 118892 . T C 2403 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=18.77;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2436,276,0 chrX 118895 . A G 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=-0.643;QD=18.13;ReadPosRankSum=1.704;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2281,255,0 chrX 118904 . G T 1974 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=17.78;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2007,231,0 chrX 118943 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.59;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2071,234,0 chrX 119064 . G T 2403 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.33;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2436,270,0 chrX 119720 . A C 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.017;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.4789;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.904;QD=21.00;ReadPosRankSum=0.414;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,91:96:99:2049,214,0 chrX 119772 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=17.6482;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.525;QD=21.86;ReadPosRankSum=1.680;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2940,345,0 chrX 120011 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.9336;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.48;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3126,342,0 chrX 120106 . A T 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=129;Dels=0.00;FS=7.450;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.600;QD=20.78;ReadPosRankSum=2.354;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2714,303,0 chrX 120196 . G T 2353 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.62;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2386,270,0 chrX 120357 . G C 2336 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.83;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2369,267,0 chrX 120394 . T C 2673 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.09;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2706,309,0 chrX 120754 . G A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=25.1339;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=16.67;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:4734,522,0 chrX 120814 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.035;DP=207;Dels=0.00;FS=14.271;HaplotypeScore=16.8531;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=1;MQRankSum=-0.532;QD=16.63;ReadPosRankSum=1.451;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:4,202:207:99:3443,405,0 chrX 120874 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=14.06;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3127,348,0 chrX 120877 . T C 3008 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=13.37;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:3041,351,0 chrX 120887 . A G 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=226;Dels=0.00;FS=2.980;HaplotypeScore=5.8866;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-0.707;QD=12.49;ReadPosRankSum=2.406;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:2856,327,0 chrX 120895 . T C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.9227;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;MQRankSum=0.824;QD=12.52;ReadPosRankSum=0.506;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:2737,309,0 chrX 120971 . G A 315 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=9.00;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,32:34:39:348,39,0 chrX 120973 . T C 302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=8.6637;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-0.571;QD=7.74;ReadPosRankSum=2.183;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:2,35:39:39:335,39,0 chrX 121043 . G A 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.133;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=1;MQRankSum=1.710;QD=14.67;ReadPosRankSum=-0.200;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2336,258,0 chrX 121045 . T C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.066;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=1;MQRankSum=1.710;QD=14.13;ReadPosRankSum=-0.482;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2279,261,0 chrX 121234 . C G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=25.8769;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=18.31;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,193:198:99:3626,429,0 chrX 121384 . T C 4504.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=17.94;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4504,522,0 chrX 121447 . C T 4184.01 SnpCluster AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=19.37;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4184,462,0 chrX 121449 . G C 4099.01 SnpCluster AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=18.98;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4099,462,0 chrX 121450 . T C 4100.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=0.103;QD=18.72;ReadPosRankSum=1.637;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4100,465,0 chrX 121516 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=233;Dels=0.00;FS=3.017;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-0.894;QD=14.17;ReadPosRankSum=2.428;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:3302,375,0 chrX 121522 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=14.42;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:3389,381,0 chrX 122256 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.081;QD=25.65;ReadPosRankSum=2.414;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3514,396,0 chrX 122391 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4004,453,0 chrX 122718 . G T 5718.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=25.6977;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.74;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5718,654,0 chrX 123010 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.01;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3609,411,0 chrX 123026 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=149;Dels=0.00;FS=5.498;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.196;QD=20.56;ReadPosRankSum=2.912;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3096,348,0 chrX 123360 . C A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4237,474,0 chrX 123517 . G C 2519 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.48;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2552,291,0 chrX 123761 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.57;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2049,225,0 chrX 123919 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.25;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2541,291,0 chrX 124061 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.82;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3880,444,0 chrX 124136 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.33;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2920,324,0 chrX 124553 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=3.220;HaplotypeScore=12.3478;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.815;QD=22.51;ReadPosRankSum=1.712;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3872,441,0 chrX 125246 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.23;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4490,528,0 chrX 125687 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.66;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3964,450,0 chrX 125702 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.113;QD=21.12;ReadPosRankSum=1.676;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3886,441,0 chrX 125717 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.42;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3635,399,0 chrX 125785 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.97;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3559,390,0 chrX 125897 . T G 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.007;DP=172;Dels=0.00;FS=6.678;HaplotypeScore=11.2111;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.736;QD=21.04;ReadPosRankSum=1.564;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3619,392,0 chrX 126262 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.84;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1804,198,0 chrX 126296 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.40;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1701,192,0 chrX 126339 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.95;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1751,189,0 chrX 126481 . T C 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=2.923;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.421;QD=19.48;ReadPosRankSum=2.302;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:1007,114,0 chrX 126504 . A T 939 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.56;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:972,108,0 chrX 126673 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.95;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2191,243,0 chrX 126679 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.31;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2061,234,0 chrX 126835 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5850;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.455;QD=20.14;ReadPosRankSum=1.712;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3545,405,0 chrX 127063 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=5.378;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.301;QD=18.47;ReadPosRankSum=1.707;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2600,312,0 chrX 127567 . A C 3334.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.65;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3334,390,0 chrX 127776 . C G 2942 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.35;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2975,333,0 chrX 127878 . T C 3932.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3932,441,0 chrX 128154 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.54;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3005,330,0 chrX 128296 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.44;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2990,327,0 chrX 128489 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=144;Dels=0.00;FS=3.020;HaplotypeScore=7.0006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.272;QD=22.43;ReadPosRankSum=2.228;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3264,369,0 chrX 128535 . T A 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.188;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.822;QD=22.95;ReadPosRankSum=1.673;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4016,444,0 chrX 128573 . C T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4074,444,0 chrX 128652 . G A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4730,534,0 chrX 128821 . G T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.59;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4470,492,0 chrX 128891 . G T 4642.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.91;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4642,513,0 chrX 129006 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.24;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3555,399,0 chrX 129184 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.24;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1957,216,0 chrX 129186 . A C 1852 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.90;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1885,213,0 chrX 129219 . A G 1486 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=16.89;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1519,174,0 chrX 129510 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.521;QD=23.20;ReadPosRankSum=1.659;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3317,381,0 chrX 129833 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.388;QD=22.82;ReadPosRankSum=1.643;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2680,303,0 chrX 129900 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.25;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2059,240,0 chrX 129954 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.72;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2188,240,0 chrX 130023 . T G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.631;QD=23.50;ReadPosRankSum=2.416;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3454,390,0 chrX 130065 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.78;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3148,357,0 chrX 130174 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=18.33;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1719,189,0 chrX 130179 . T C 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=-1.275;QD=16.96;ReadPosRankSum=1.694;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1593,180,0 chrX 130203 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=16.07;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1688,189,0 chrX 130224 . A G 1802 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;MQRankSum=-1.513;QD=15.95;ReadPosRankSum=2.319;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1835,210,0 chrX 130227 . C A 1715 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=16.65;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1748,195,0 chrX 130230 . T C 1708 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=17.08;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1741,195,0 chrX 130263 . C T 1986 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=20.69;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2019,225,0 chrX 130584 . G T 2189 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.54;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2222,246,0 chrX 130774 . T A 2100 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.11;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2133,240,0 chrX 130800 . A G 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.726;QD=21.15;ReadPosRankSum=1.695;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2021,228,0 chrX 130889 . T C 2052 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.60;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2085,237,0 chrX 130946 . A G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=3.159;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.109;QD=24.21;ReadPosRankSum=1.693;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2188,249,0 chrX 131168 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.7474;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.11;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3847,429,0 chrX 131182 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=193;Dels=0.00;FS=5.292;HaplotypeScore=9.2653;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-0.195;QD=20.51;ReadPosRankSum=1.690;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:3,188:193:99:3958,456,0 chrX 131236 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=186;Dels=0.01;FS=5.952;HaplotypeScore=8.5067;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-0.049;QD=17.83;ReadPosRankSum=2.841;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3317,375,0 chrX 131240 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=183;Dels=0.00;FS=6.586;HaplotypeScore=8.6527;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.383;QD=18.25;ReadPosRankSum=2.208;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3339,375,0 chrX 131266 . A T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.1199;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.75;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3393,381,0 chrX 131366 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=4.357;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.212;QD=21.34;ReadPosRankSum=1.597;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3842,432,0 chrX 131878 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.11;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1764,201,0 chrX 131884 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.28;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1635,186,0 chrX 131968 . A G 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=108;Dels=0.00;FS=7.661;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.832;QD=22.42;ReadPosRankSum=2.404;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2454,288,0 chrX 132010 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.18;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2676,303,0 chrX 132022 . A G 2469 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.86;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2502,282,0 chrX 132405 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.50;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2742,309,0 chrX 132867 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.77;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3708,420,0 chrX 133192 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.73;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4296,471,0 chrX 133342 . T C 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.359;QD=20.28;ReadPosRankSum=1.705;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2690,309,0 chrX 133354 . T C 2839 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.72;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2872,327,0 chrX 133624 . T A 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.000;QD=22.63;ReadPosRankSum=1.708;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3247,360,0 chrX 133771 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.76;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4177,459,0 chrX 133964 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=1;QD=18.53;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2294,255,0 chrX 134041 . T C 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.217;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=103.8379;MLEAC=1;MLEAF=0.500;MQ=51.34;MQ0=1;MQRankSum=2.050;QD=1.04;ReadPosRankSum=-5.242;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,19:121:99:156,0,305 chrX 134053 . T A 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.207;DP=111;Dels=0.00;FS=3.747;HaplotypeScore=4.7897;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=1.700;QD=15.05;ReadPosRankSum=1.446;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:1704,192,0 chrX 134085 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=14.59;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1346,153,0 chrX 134238 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=20.90;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1998,234,0 chrX 134291 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.94;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2041,231,0 chrX 134410 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.01;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2218,246,0 chrX 134512 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0977;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.46;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2780,312,0 chrX 134554 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.10;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2949,324,0 chrX 134908 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.667;QD=24.52;ReadPosRankSum=1.883;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3776,435,0 chrX 134956 . G T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3838,429,0 chrX 135448 . T C 5890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.2441;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.397;QD=22.40;ReadPosRankSum=1.719;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:1,261:263:99:5890,660,0 chrX 135579 . T C 5327.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.7283;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.65;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5327,624,0 chrX 135650 . T C 6303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=312;Dels=0.00;FS=6.556;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.057;QD=20.20;ReadPosRankSum=2.418;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:2,308:312:99:6303,734,0 chrX 135693 . A G 7354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.228;QD=22.22;ReadPosRankSum=1.722;SB=-4.259e+03 GT:AD:DP:GQ:PL 1/1:1,329:331:99:7354,837,0 chrX 135754 . C T 5033.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.0247;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.33;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5033,573,0 chrX 135821 . G T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.77;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4940,540,0 chrX 135988 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=3.724;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.346;QD=20.67;ReadPosRankSum=1.711;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3431,393,0 chrX 135996 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.25;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3381,384,0 chrX 136071 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.41;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3156,366,0 chrX 136144 . G A 2811 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.79;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2844,312,0 chrX 136195 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.31;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3683,408,0 chrX 136260 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.4847;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.97;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3648,393,0 chrX 136384 . G A 5871.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.67;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5871,654,0 chrX 136623 . A C 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=214;Dels=0.00;FS=5.176;HaplotypeScore=14.0067;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.552;QD=20.96;ReadPosRankSum=3.385;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:4,206:214:99:4486,528,0 chrX 136648 . C T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.7214;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.07;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4369,498,0 chrX 136933 . A G 248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=65;Dels=0.05;FS=7.849;HaplotypeScore=13.6311;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.079;QD=3.82;ReadPosRankSum=3.757;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:9,52:62:33:281,33,0 chrX 137367 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.111;DP=146;Dels=0.00;FS=8.970;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.229;QD=22.03;ReadPosRankSum=3.363;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:4,142:146:99:3249,369,0 chrX 137481 . A G 3175 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3208,372,0 chrX 137516 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.27;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3407,387,0 chrX 137767 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.53;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3854,441,0 chrX 138413 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.61;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2410,261,0 chrX 138706 . A G 3071 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3104,348,0 chrX 138759 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.455;QD=23.93;ReadPosRankSum=1.686;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3614,402,0 chrX 138806 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=174;Dels=0.00;FS=6.899;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.450;QD=22.72;ReadPosRankSum=2.378;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3953,468,0 chrX 138890 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3320,375,0 chrX 139088 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=163;Dels=0.00;FS=5.397;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.142;QD=21.68;ReadPosRankSum=2.945;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3534,399,0 chrX 139563 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.42;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1376,150,0 chrX 139713 . T C 2401 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2434,282,0 chrX 139819 . A G 1825 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=68.2664;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.51;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1858,216,0 chrX 139986 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.59;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2405,270,0 chrX 140088 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.84;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1860,204,0 chrX 140130 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1630,183,0 chrX 140297 . C A 1611 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.48;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1644,183,0 chrX 140425 . C A 1272 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.43;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1305,144,0 chrX 140646 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.22;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2205,249,0 chrX 140649 . T A 2306 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.96;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2339,261,0 chrX 140994 . T G 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=4.064;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.986;QD=21.94;ReadPosRankSum=1.713;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3971,465,0 chrX 141042 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.4074;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.81;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4698,528,0 chrX 141078 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.75;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3417,375,0 chrX 141083 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.11;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3339,369,0 chrX 141161 . G C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.28;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3306,378,0 chrX 141376 . T C 2511 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.28;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2544,291,0 chrX 141409 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.28;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2438,276,0 chrX 141656 . G T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.53;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3595,408,0 chrX 141658 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.26;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3508,393,0 chrX 141743 . A G 2528 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.37;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2561,288,0 chrX 141800 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2820,321,0 chrX 141883 . A T 3209 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.97;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3242,363,0 chrX 141900 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.00;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3344,366,0 chrX 141924 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.95;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3260,360,0 chrX 142022 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.970;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.2798;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.970;QD=22.54;ReadPosRankSum=1.132;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3404,361,0 chrX 142168 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.18;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4148,468,0 chrX 142186 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.61;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3652,402,0 chrX 142222 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.01;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3718,405,0 chrX 142256 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.45;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3040,333,0 chrX 142259 . G C 2846 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.01;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2879,336,0 chrX 142307 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.28;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2925,342,0 chrX 142640 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3632,393,0 chrX 142749 . T A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.16;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3821,429,0 chrX 143026 . T A 3083 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0802;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.71;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3116,345,0 chrX 143033 . G C 2687 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.99;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2720,309,0 chrX 143163 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.94;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1927,213,0 chrX 143166 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.54;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1923,213,0 chrX 143550 . T G 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=199;Dels=0.00;FS=3.025;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.345;QD=22.96;ReadPosRankSum=2.399;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:4570,525,0 chrX 143678 . A T 4619.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4619,507,0 chrX 144098 . A G 2453 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.15;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2486,285,0 chrX 144131 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=16.25;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:1869,213,0 chrX 144137 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.19;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2027,225,0 chrX 144558 . A G 2949 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.68;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2982,333,0 chrX 144890 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=22.31;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2130,231,0 chrX 144923 . C T 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.1525;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=-0.101;QD=17.50;ReadPosRankSum=0.014;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1538,168,0 chrX 144958 . G T 1875 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=22.87;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1908,216,0 chrX 145040 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=16.93;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1489,171,0 chrX 145097 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=79.4541;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=0;QD=13.53;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1345,147,0 chrX 145118 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=32.00;MQ0=0;QD=13.10;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1369,150,0 chrX 145124 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=12.90;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1400,162,0 chrX 145142 . T C 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9413;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;MQRankSum=-0.686;QD=15.59;ReadPosRankSum=1.699;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1686,189,0 chrX 145195 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.29;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2907,324,0 chrX 145341 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=23.29;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2921,318,0 chrX 145726 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.03;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2893,315,0 chrX 145771 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.323;QD=22.27;ReadPosRankSum=1.708;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3273,372,0 chrX 145826 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.20;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3387,378,0 chrX 145879 . A G 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.603;HaplotypeScore=5.8803;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.074;QD=21.77;ReadPosRankSum=1.695;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2101,243,0 chrX 146059 . C G 2492 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.30;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2525,285,0 chrX 146367 . G A 2266 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=16.91;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2299,255,0 chrX 146369 . G A 2055 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=15.93;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2088,231,0 chrX 146376 . T C 1875 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.410;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;MQRankSum=-1.621;QD=15.00;ReadPosRankSum=1.649;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1908,216,0 chrX 146388 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=12.90;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1658,189,0 chrX 146394 . A G 1725 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=12.32;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:1758,204,0 chrX 146412 . T C 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=135;Dels=0.00;FS=5.806;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;MQRankSum=-2.202;QD=12.02;ReadPosRankSum=2.948;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:1656,189,0 chrX 146535 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.20;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3897,432,0 chrX 146580 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=22.49;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4094,453,0 chrX 146598 . T A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=21.22;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4074,444,0 chrX 146738 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.40;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2769,306,0 chrX 147014 . G T 2611 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.35;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2644,288,0 chrX 147143 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.93;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3921,420,0 chrX 147445 . G A 5620.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.0571;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.75;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5620,627,0 chrX 147612 . T C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=174;Dels=0.00;FS=13.011;HaplotypeScore=4.0640;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.117;QD=17.32;ReadPosRankSum=2.936;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:3,169:174:99:3047,345,0 chrX 147613 . T C 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=174;Dels=0.00;FS=12.755;HaplotypeScore=4.8527;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.428;QD=16.85;ReadPosRankSum=2.960;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:2965,345,0 chrX 147768 . C T 2639 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.46;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2672,294,0 chrX 147787 . A G 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=2.976;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.704;QD=20.48;ReadPosRankSum=2.366;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2429,279,0 chrX 147794 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.18;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2384,267,0 chrX 147855 . T A 2121 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.33;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2154,237,0 chrX 147905 . T G 2057 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.6183;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.41;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2090,243,0 chrX 147927 . A C 2167 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9006;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=18.68;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2200,249,0 chrX 148026 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.78;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2407,279,0 chrX 148061 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.90;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2595,294,0 chrX 148135 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.9707;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.05;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3373,369,0 chrX 148152 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.74;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2806,318,0 chrX 148168 . G C 2556 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=16.71;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,148:153:99:2589,297,0 chrX 148288 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.02;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2598,285,0 chrX 148303 . T C 2398 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.15;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2431,273,0 chrX 148402 . G C 2234 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.02;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,119:124:99:2267,270,0 chrX 148411 . T A 2298 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.16;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2331,255,0 chrX 148549 . A G 1910 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.22;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1943,219,0 chrX 148569 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.49;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2147,237,0 chrX 149059 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.06;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3161,342,0 chrX 149085 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.305;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.872;QD=22.29;ReadPosRankSum=1.707;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3109,360,0 chrX 149152 . C T 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.966;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8670;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.242;QD=23.03;ReadPosRankSum=0.843;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2635,294,0 chrX 149570 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.7903;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.28;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4191,474,0 chrX 150379 . G T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.1701;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=20.69;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4263,471,0 chrX 150482 . A G 2887 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.21;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2920,330,0 chrX 150493 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=8.048;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.030;QD=22.18;ReadPosRankSum=2.410;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2761,306,0 chrX 150662 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=20.6361;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.25;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2179,246,0 chrX 150714 . C T 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.027;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.962;QD=20.92;ReadPosRankSum=0.412;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1351,132,0 chrX 151050 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.16;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3228,360,0 chrX 151245 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.98;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3781,417,0 chrX 151609 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3457,381,0 chrX 151846 . C T 4766.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.6586;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.32;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4766,519,0 chrX 152040 . G A 5869.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.4915;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.49;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5869,672,0 chrX 152136 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.0362;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.79;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4216,468,0 chrX 152244 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.2916;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.32;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3767,423,0 chrX 152343 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3378,384,0 chrX 152475 . A G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=119;Dels=0.00;FS=7.583;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.651;QD=21.57;ReadPosRankSum=2.408;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2600,294,0 chrX 152637 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.18;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3283,357,0 chrX 153250 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.57;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1123,126,0 chrX 153254 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.38;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1052,120,0 chrX 153377 . A C 545 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=19.46;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:66:578,66,0 chrX 153410 . T A 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;MQRankSum=-0.346;QD=24.04;ReadPosRankSum=1.669;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1355,150,0 chrX 153468 . A G 2045 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=23.78;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:2078,237,0 chrX 153819 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=11.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:80,9,0 chrX 154954 . T A 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.7635;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.167;QD=23.15;ReadPosRankSum=1.599;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2464,276,0 chrX 154973 . A G 2137 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=20.95;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2170,255,0 chrX 154996 . G T 2037 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.79;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2070,228,0 chrX 155099 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.26;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3197,351,0 chrX 155165 . A G 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=4.299;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.161;QD=20.05;ReadPosRankSum=1.694;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3669,414,0 chrX 155175 . T G 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=188;Dels=0.00;FS=2.577;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-1.604;QD=19.00;ReadPosRankSum=2.920;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:3572,411,0 chrX 155209 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=16.51;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2740,303,0 chrX 155215 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=14.48;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:2393,279,0 chrX 155396 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.9689;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.92;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4078,459,0 chrX 155624 . T C 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=127;Dels=0.01;FS=6.640;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.625;QD=18.41;ReadPosRankSum=2.350;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2371,276,0 chrX 155625 . A G 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.596;QD=19.16;ReadPosRankSum=1.594;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2428,282,0 chrX 155705 . T C 1821 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.79;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1854,216,0 chrX 156143 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.8148;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=24.21;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3341,366,0 chrX 156360 . A C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.958;QD=19.18;ReadPosRankSum=1.610;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1663,186,0 chrX 156493 . A T 1162 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.13;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1195,135,0 chrX 156523 . T C 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7864;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.201;QD=23.12;ReadPosRankSum=1.692;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2021,228,0 chrX 157046 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.37;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2874,315,0 chrX 157169 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.28;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1459,165,0 chrX 157189 . A C 1329 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.84;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1362,153,0 chrX 157299 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.732;QD=20.57;ReadPosRankSum=1.699;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2213,252,0 chrX 157319 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.95;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2589,294,0 chrX 157380 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=21.24;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2688,306,0 chrX 157408 . A G 1958 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=17.03;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1991,234,0 chrX 157409 . G A 1986 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=17.27;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2019,231,0 chrX 157412 . G C 2044 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.32;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2077,240,0 chrX 157487 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.58;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2246,261,0 chrX 157502 . G C 2480 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.22;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2513,285,0 chrX 157517 . G C 2432 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.15;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2465,282,0 chrX 157579 . A T 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=184;Dels=0.00;FS=9.163;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.166;QD=21.26;ReadPosRankSum=3.412;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:3911,435,0 chrX 157602 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=-0.369;QD=21.47;ReadPosRankSum=1.714;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4036,462,0 chrX 157619 . A T 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=3.300;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=0.372;QD=20.72;ReadPosRankSum=1.713;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3854,441,0 chrX 157691 . T C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.711;DP=106;Dels=0.00;FS=12.321;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=0.432;QD=17.09;ReadPosRankSum=3.696;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:5,101:106:99:1845,210,0 chrX 157695 . G T 1962 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=17.06;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1995,222,0 chrX 157773 . C G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.5938;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.81;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3566,417,0 chrX 157821 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=3.597;HaplotypeScore=11.1920;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.677;QD=22.20;ReadPosRankSum=1.652;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3862,447,0 chrX 157921 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.80;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4265,474,0 chrX 158024 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=172;Dels=0.00;FS=3.220;HaplotypeScore=10.5953;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.020;QD=23.45;ReadPosRankSum=1.671;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4033,444,0 chrX 158168 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.28;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3520,387,0 chrX 158223 . A C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.805;QD=21.65;ReadPosRankSum=1.708;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3129,357,0 chrX 158376 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=3.010;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.137;QD=22.04;ReadPosRankSum=1.655;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2987,348,0 chrX 158721 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.7722;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.19;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3795,432,0 chrX 158898 . G C 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.4232;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=1.996;QD=22.79;ReadPosRankSum=2.169;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4193,474,0 chrX 159076 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0694;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=20.58;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3767,414,0 chrX 159102 . T C 3083 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=17.82;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3116,354,0 chrX 159120 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-2.172;QD=15.29;ReadPosRankSum=2.420;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:2601,315,0 chrX 159124 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=16.47;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2898,327,0 chrX 159135 . G T 2550 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=14.83;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2583,282,0 chrX 159148 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=15.78;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2431,264,0 chrX 159201 . A G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.6587;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.562;QD=16.82;ReadPosRankSum=1.665;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2624,300,0 chrX 159443 . T A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;DP=73;Dels=0.00;FS=54.498;HaplotypeScore=6.6021;MLEAC=1;MLEAF=0.500;MQ=47.35;MQ0=0;MQRankSum=0.676;QD=0.27;ReadPosRankSum=-4.260;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,13:73:50:50,0,319 chrX 159754 . T C 2480 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.75;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2513,288,0 chrX 159830 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.72;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2520,285,0 chrX 160491 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.94;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2098,234,0 chrX 160511 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=5.633;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.254;QD=19.81;ReadPosRankSum=1.686;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3005,339,0 chrX 160930 . G A 6106.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=9.1510;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.81;SB=-3.533e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6106,678,0 chrX 160945 . T C 5152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=255;Dels=0.00;FS=6.605;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.169;QD=20.20;ReadPosRankSum=2.430;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5152,608,0 chrX 161023 . C T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.89;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4556,519,0 chrX 161251 . A G 3107 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.19;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3140,360,0 chrX 161596 . A G 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.340;QD=20.54;ReadPosRankSum=1.700;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2251,258,0 chrX 162223 . A T 2868 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.41;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2901,315,0 chrX 162437 . G A 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=115;Dels=0.00;FS=4.135;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.337;QD=21.50;ReadPosRankSum=-0.577;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2505,270,0 chrX 162448 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.08;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1986,219,0 chrX 162522 . C A 2891 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=24.09;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2924,321,0 chrX 162540 . A G 2960 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.68;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2993,339,0 chrX 162711 . T C 4242.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=24.38;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4242,477,0 chrX 162765 . C A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.91;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3365,372,0 chrX 162768 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7080;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.04;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,174:179:99:3263,360,0 chrX 162832 . A C 4816.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.49;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4816,546,0 chrX 162922 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.1181;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.73;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:3689,414,0 chrX 162937 . C T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.66;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4214,462,0 chrX 163140 . A G 5504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=248;Dels=0.00;FS=12.437;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.109;QD=22.19;ReadPosRankSum=3.369;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:4,242:248:99:5504,633,0 chrX 163580 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=137;Dels=0.00;FS=5.625;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.508;QD=21.64;ReadPosRankSum=2.875;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2997,339,0 chrX 163830 . A C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.155;QD=21.28;ReadPosRankSum=0.483;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,133:138:99:2969,336,0 chrX 163998 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=153;Dels=0.00;FS=3.037;HaplotypeScore=11.6337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.474;QD=22.22;ReadPosRankSum=2.417;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3400,384,0 chrX 164112 . T C 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=5.027;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=-1.237;QD=20.18;ReadPosRankSum=1.666;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2172,255,0 chrX 164155 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=15.3943;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=21.73;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2402,264,0 chrX 164308 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.94;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2488,276,0 chrX 164500 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.05;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2749,300,0 chrX 164522 . C A 2444 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.71;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2477,273,0 chrX 164529 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.26;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2647,288,0 chrX 164772 . A G 2299 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.99;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2332,264,0 chrX 164955 . C G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3313,372,0 chrX 165091 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.40;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3723,408,0 chrX 165169 . T A 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=147;Dels=0.00;FS=3.006;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.176;QD=21.75;ReadPosRankSum=-0.594;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3230,369,0 chrX 165369 . C G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.2043;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.78;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3372,390,0 chrX 165469 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.06;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1555,171,0 chrX 165578 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.21;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1810,201,0 chrX 165596 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.55;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1615,183,0 chrX 165680 . A C 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;DP=46;Dels=0.00;FS=5.166;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.356;QD=21.28;ReadPosRankSum=1.657;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1012,114,0 chrX 166098 . A G 5834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=257;Dels=0.00;FS=8.735;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=2.100;QD=22.70;ReadPosRankSum=3.386;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:4,252:257:99:5834,669,0 chrX 166362 . A G 5720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=252;Dels=0.00;FS=9.511;HaplotypeScore=14.2433;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.876;QD=22.70;ReadPosRankSum=2.956;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:3,247:252:99:5720,648,0 chrX 166532 . A G 5160.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.14;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5160,591,0 chrX 166575 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=4.157;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.222;QD=20.15;ReadPosRankSum=1.670;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:4553,537,0 chrX 166590 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.95;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4526,507,0 chrX 166814 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7659;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.22;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3288,372,0 chrX 167196 . G A 5510.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.0264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5510,618,0 chrX 167286 . C T 4824.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.88;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4824,531,0 chrX 167289 . C T 4675.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.81;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:4675,525,0 chrX 167370 . G A 5748.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=13.5044;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.38;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:5748,648,0 chrX 167552 . G A 6111.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.89;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6111,675,0 chrX 167814 . C T 5424.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.4868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.98;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5424,603,0 chrX 168672 . G A 5031.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.3732;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.97;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5031,579,0 chrX 168888 . T C 5143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=245;Dels=0.00;FS=3.192;HaplotypeScore=14.0530;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.795;QD=20.99;ReadPosRankSum=1.704;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5143,582,0 chrX 169356 . A G 4491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=3.522;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.457;QD=23.76;ReadPosRankSum=1.677;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4491,519,0 chrX 169908 . A G 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.109;QD=21.56;ReadPosRankSum=1.714;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4117,462,0 chrX 170079 . A G 4143.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8120;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.28;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4143,465,0 chrX 170556 . T A 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.8215;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.384;QD=22.81;ReadPosRankSum=1.695;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4219,474,0 chrX 170649 . C G 4170.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.8143;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.85;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4170,474,0 chrX 170886 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.78;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3896,432,0 chrX 170937 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.7862;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.358;QD=20.79;ReadPosRankSum=1.693;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:3805,432,0 chrX 170991 . G A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3958,441,0 chrX 171207 . T C 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=217;Dels=0.00;FS=3.174;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.026;QD=22.79;ReadPosRankSum=1.700;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4945,570,0 chrX 171357 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=192;Dels=0.00;FS=5.770;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.963;QD=20.88;ReadPosRankSum=2.910;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:4008,456,0 chrX 171764 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.648;QD=21.97;ReadPosRankSum=1.674;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3955,456,0 chrX 171829 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.82;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4050,438,0 chrX 172240 . A G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=137;Dels=0.00;FS=6.117;HaplotypeScore=11.1566;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.027;QD=20.99;ReadPosRankSum=2.342;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2909,330,0 chrX 172657 . A T 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=119;Dels=0.00;FS=6.747;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.134;QD=21.29;ReadPosRankSum=2.367;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2567,282,0 chrX 172660 . A G 2306 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.38;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2339,270,0 chrX 173029 . G T 1837 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.96;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1870,210,0 chrX 173226 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8538;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.07;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2120,246,0 chrX 173334 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=7.2614;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.07;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2238,252,0 chrX 173399 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.59;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2624,288,0 chrX 173420 . T C 2688 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.03;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2721,306,0 chrX 173466 . T C 2644 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.34;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2677,303,0 chrX 173479 . T A 2493 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.89;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2526,282,0 chrX 173883 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.922;QD=21.87;ReadPosRankSum=2.347;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4177,477,0 chrX 173923 . C T 4533.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.55;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4533,507,0 chrX 174178 . C T 5221.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.6479;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=24.28;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5221,582,0 chrX 174214 . C A 6132.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.58;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6132,705,0 chrX 174303 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4064,468,0 chrX 175220 . C T 5354.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.5884;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.00;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5354,582,0 chrX 175242 . T C 5223.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.23;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5223,585,0 chrX 175309 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.5888;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.86;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3957,429,0 chrX 175369 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.73;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3797,426,0 chrX 175519 . T A 5620.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.98;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5620,624,0 chrX 175555 . T A 5983.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.22;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5983,669,0 chrX 175633 . C G 4641.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.21;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4641,525,0 chrX 175828 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.03;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=18.52;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3518,411,0 chrX 176002 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.7726;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.39;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2536,285,0 chrX 176039 . G C 2919 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.78;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:2952,333,0 chrX 176054 . G A 3145 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.83;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3178,345,0 chrX 176153 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.51;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3230,357,0 chrX 176194 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.475;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.377;QD=22.65;ReadPosRankSum=1.707;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3182,363,0 chrX 176225 . T G 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.00;FS=3.042;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.991;QD=19.39;ReadPosRankSum=2.395;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2651,303,0 chrX 176228 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.670;QD=19.28;ReadPosRankSum=1.707;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2674,306,0 chrX 176636 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4110,453,0 chrX 176870 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3494,390,0 chrX 177327 . T C 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=15.0244;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.167;QD=22.04;ReadPosRankSum=1.681;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3008,342,0 chrX 177532 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.60;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2731,312,0 chrX 177542 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.029;QD=21.59;ReadPosRankSum=1.706;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2926,333,0 chrX 177578 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.92;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3255,363,0 chrX 177594 . A C 3123 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.02;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3156,357,0 chrX 177637 . T A 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.9481;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.381;QD=19.56;ReadPosRankSum=1.710;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3124,354,0 chrX 177669 . T C 2906 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.69;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2939,336,0 chrX 177798 . C T 1206 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1239,144,0 chrX 178010 . G T 2411 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.78;MQ0=0;QD=25.11;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2444,270,0 chrX 178358 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.67;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4568,501,0 chrX 178475 . T C 4967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.803;QD=24.11;ReadPosRankSum=1.698;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4967,570,0 chrX 178571 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.6822;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.00;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4327,498,0 chrX 178616 . G A 5476.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.9951;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.45;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5476,594,0 chrX 179084 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.225;DP=152;Dels=0.00;FS=13.443;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.951;QD=22.84;ReadPosRankSum=3.400;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:4,146:152:99:3471,393,0 chrX 179602 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=204;Dels=0.00;FS=9.894;HaplotypeScore=14.1234;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-2.079;QD=22.11;ReadPosRankSum=2.966;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:4510,510,0 chrX 179749 . A T 6120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=253;Dels=0.00;FS=8.445;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.073;QD=24.19;ReadPosRankSum=2.430;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:6120,678,0 chrX 180158 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.96;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2690,303,0 chrX 180249 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=25.09;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2944,324,0 chrX 180268 . T C 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.629;QD=22.34;ReadPosRankSum=1.698;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2289,264,0 chrX 180354 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1746;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.74;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3194,363,0 chrX 180756 . A G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=140;Dels=0.00;FS=5.899;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.079;QD=22.39;ReadPosRankSum=2.921;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3167,357,0 chrX 180789 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.00;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2563,282,0 chrX 181065 . C T 4651.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.26;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4651,516,0 chrX 181431 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3001,336,0 chrX 181523 . G C 3970.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.01;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3970,462,0 chrX 181803 . C A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.7573;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.85;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3533,405,0 chrX 181808 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=3.715;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=-0.570;QD=19.46;ReadPosRankSum=1.711;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3309,387,0 chrX 181820 . T G 3043 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.89;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3076,354,0 chrX 182087 . C G 3443.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.95;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3443,384,0 chrX 182274 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.09;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2437,279,0 chrX 182284 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.28;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2459,279,0 chrX 182572 . C T 5812.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.98;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:5812,645,0 chrX 182825 . G A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.24;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3886,420,0 chrX 183608 . T C 4526.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.95;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4526,510,0 chrX 183648 . G C 4484.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.77;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,197:206:99:4484,513,0 chrX 183678 . T A 4743.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.60;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4743,525,0 chrX 183738 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.3996;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.33;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3391,387,0 chrX 183814 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.9595;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=17.95;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3066,336,0 chrX 183827 . T C 3138 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.2545;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=17.53;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3171,354,0 chrX 183834 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.5261;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.35;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3376,375,0 chrX 184128 . C A 3166 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.39;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3199,357,0 chrX 184212 . A G 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-0.861;QD=20.28;ReadPosRankSum=2.374;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2669,297,0 chrX 184236 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=79.4022;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=19.35;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1929,216,0 chrX 184244 . G C 122.13 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=1.25;SB=-7.241e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:18:155,18,0 chrX 184350 . A G 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.313;QD=20.04;ReadPosRankSum=1.699;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2177,249,0 chrX 184421 . G T 1885 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=20.94;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1918,210,0 chrX 184438 . A G 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=90;Dels=0.00;FS=7.459;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-0.734;QD=17.76;ReadPosRankSum=2.394;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1631,183,0 chrX 184439 . A G 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=7.533;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=0.101;QD=19.26;ReadPosRankSum=2.334;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1670,186,0 chrX 184592 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.51;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3042,336,0 chrX 184824 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.70;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3268,372,0 chrX 184846 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.22;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3417,387,0 chrX 184848 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=168;Dels=0.00;FS=6.583;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.139;QD=20.38;ReadPosRankSum=2.406;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3423,384,0 chrX 184941 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3700,414,0 chrX 185090 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.99;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4000,450,0 chrX 185180 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.65;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3511,411,0 chrX 185495 . A T 775 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:808,90,0 chrX 185641 . T C 1894 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1927,219,0 chrX 186023 . G T 4607.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=4.9273;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.07;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:4607,513,0 chrX 186025 . A C 4574.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.80;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:4574,525,0 chrX 186317 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.8612;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.108;QD=19.56;ReadPosRankSum=1.714;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3795,432,0 chrX 186880 . T A 181.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.10;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:214,24,0 chrX 187044 . T G 1307 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1340,150,0 chrX 187652 . G T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3570,411,0 chrX 187746 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.037;DP=122;Dels=0.00;FS=5.217;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.428;QD=20.20;ReadPosRankSum=3.385;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:4,117:122:99:2497,279,0 chrX 188331 . C T 4741.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.4611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4741,552,0 chrX 188547 . A G 2811 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2844,333,0 chrX 188919 . T A 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.6976;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.722;QD=22.56;ReadPosRankSum=1.697;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4489,498,0 chrX 188959 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.42;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3218,366,0 chrX 188961 . G A 3033 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.20;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3066,345,0 chrX 189105 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.68;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3602,402,0 chrX 189246 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.23;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3005,327,0 chrX 189334 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.62;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2887,321,0 chrX 189441 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=4.732;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.134;QD=21.80;ReadPosRankSum=1.669;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2453,270,0 chrX 189631 . G T 1893 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.81;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1926,210,0 chrX 189655 . A T 2110 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.69;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2143,243,0 chrX 190275 . A C 3754.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.35;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3754,426,0 chrX 190298 . G A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.46;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3905,432,0 chrX 191257 . C A 2632 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=7.8838;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.50;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2665,297,0 chrX 191326 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.86;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2615,297,0 chrX 191341 . T C 2711 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.44;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2744,315,0 chrX 191353 . T C 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.080;QD=19.44;ReadPosRankSum=1.687;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3027,342,0 chrX 191458 . A T 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=126;Dels=0.00;FS=5.423;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.696;QD=19.45;ReadPosRankSum=2.912;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2484,279,0 chrX 191621 . A T 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=8.553;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.729;QD=21.89;ReadPosRankSum=2.413;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2944,327,0 chrX 192156 . A G 5063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=13.5396;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.822;QD=19.85;ReadPosRankSum=1.637;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5063,588,0 chrX 192956 . C T 5820.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.13;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5820,630,0 chrX 193023 . T C 5737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=269;Dels=0.00;FS=3.718;HaplotypeScore=22.8170;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.664;QD=21.33;ReadPosRankSum=1.706;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:1,265:269:99:5737,651,0 chrX 193406 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.87;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1520,171,0 chrX 193639 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.46;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1291,144,0 chrX 194259 . A G 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=222;Dels=0.00;FS=4.993;HaplotypeScore=11.1885;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.149;QD=22.58;ReadPosRankSum=1.669;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5013,567,0 chrX 194790 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.53;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4585,498,0 chrX 194922 . A T 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.087;DP=129;Dels=0.00;FS=2.950;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.505;QD=21.87;ReadPosRankSum=2.412;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2854,315,0 chrX 195076 . C T 2333 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.46;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2366,264,0 chrX 195081 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.97;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2406,264,0 chrX 195299 . T C 2279 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.72;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2312,270,0 chrX 195349 . T C 2745 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.45;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2778,315,0 chrX 195849 . C A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.5261;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.61;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3912,435,0 chrX 195964 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.70;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3494,399,0 chrX 196239 . A T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3610,396,0 chrX 196517 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.55;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3857,423,0 chrX 196544 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.82;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3587,402,0 chrX 196724 . A C 6559.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=24.9518;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.08;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,293:297:99:6559,782,0 chrX 197018 . G C 4218.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.4278;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.08;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4218,477,0 chrX 197042 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=19.38;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3275,375,0 chrX 197119 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.58;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2195,246,0 chrX 197272 . A G 1903 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=22.39;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1936,219,0 chrX 197407 . T A 1230 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1263,138,0 chrX 197409 . A C 1192 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1225,138,0 chrX 197415 . G A 1233 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=19.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1266,135,0 chrX 203857 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=1;MLEAF=0.500;MQ=32.44;MQ0=0;MQRankSum=0.358;QD=2.27;ReadPosRankSum=-1.231;SB=-6.862e-03 GT:AD:DP:GQ:PL 0/1:3,2:5:38:41,0,38 chrX 203899 . A G 128.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=1;QD=10.68;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:12:18:161,18,0 chrX 203911 . C T 91.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.51;MQ0=10;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.000;SB=-8.044e-01 GT:AD:DP:GQ:PL 0/1:11,9:20:8:121,0,8 chrX 204138 . G T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DP=53;Dels=0.00;FS=126.278;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=5;MQRankSum=-4.807;QD=0.29;ReadPosRankSum=-2.371;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,32:53:45:45,0,379 chrX 204161 . G A 183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;DP=60;Dels=0.02;FS=102.410;HaplotypeScore=15.9891;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=12;MQRankSum=3.631;QD=3.05;ReadPosRankSum=-2.550;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:47,12:59:99:213,0,176 chrX 204180 . G A 176.04 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.152;DP=62;Dels=0.00;FS=55.213;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=25;MQRankSum=-2.905;QD=2.84;ReadPosRankSum=3.523;SB=-3.051e+00 GT:AD:DP:GQ:PL 0/1:27,34:62:18:206,0,18 chrX 204181 . C T 191.07 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.135;DP=62;Dels=0.00;FS=55.114;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=26;MQRankSum=-3.559;QD=3.08;ReadPosRankSum=3.465;SB=-3.085e+00 GT:AD:DP:GQ:PL 0/1:28,33:62:15:221,0,15 chrX 204184 . A G 186.19 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=59;Dels=0.00;FS=37.369;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=26;MQRankSum=-2.849;QD=3.16;ReadPosRankSum=2.724;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:26,33:59:8:218,8,0 chrX 204306 . A C 379.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;DP=54;Dels=0.00;FS=83.918;HaplotypeScore=6.9908;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=15;MQRankSum=2.690;QD=7.02;ReadPosRankSum=3.564;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:33,21:54:99:409,0,154 chrX 204309 . T A 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DP=55;Dels=0.00;FS=37.901;HaplotypeScore=7.7795;MLEAC=1;MLEAF=0.500;MQ=22.12;MQ0=14;MQRankSum=-1.966;QD=3.44;ReadPosRankSum=-2.736;SB=0.101 GT:AD:DP:GQ:PL 0/1:41,14:55:99:219,0,382 chrX 204339 . C G 963 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=21.89;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:996,111,0 chrX 204359 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=22.62;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:983,114,0 chrX 204393 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=21.57;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:87:788,87,0 chrX 204641 . A G 189.03 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:222,24,0 chrX 204724 . C A 1352 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=21.12;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1385,147,0 chrX 204730 . A G 1250 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.49;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1283,147,0 chrX 205042 . A G 2531 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.92;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2564,288,0 chrX 205045 . G T 2523 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.68;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2556,279,0 chrX 205176 . C G 3013 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.22;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3046,342,0 chrX 205203 . A T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.98;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3461,387,0 chrX 205252 . C A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.6454;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.88;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3786,423,0 chrX 205704 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.69;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4265,483,0 chrX 205745 . G C 4479.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.1904;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.06;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:4479,501,0 chrX 205934 . T C 2235 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.50;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2268,264,0 chrX 205946 . T A 1814 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.70;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1847,207,0 chrX 206436 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=3.695;HaplotypeScore=16.1666;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.515;QD=22.39;ReadPosRankSum=-0.946;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4143,456,0 chrX 206489 . C A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.77;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3462,387,0 chrX 206537 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=146;Dels=0.00;FS=9.676;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.924;QD=20.68;ReadPosRankSum=2.924;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3052,357,0 chrX 206790 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.44;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4296,483,0 chrX 206795 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.0581;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.75;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4425,519,0 chrX 206922 . C T 5558.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.3876;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.06;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5558,612,0 chrX 207161 . G A 8188.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=18.4864;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.94;SB=-3.997e+03 GT:AD:DP:GQ:PL 1/1:0,338:342:99:8188,936,0 chrX 207263 . C T 6330.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=12.1111;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.93;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,273:276:99:6330,702,0 chrX 207300 . C T 6534.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.76;SB=-3.321e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6534,706,0 chrX 207320 . T C 5444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=256;Dels=0.00;FS=4.754;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.232;QD=21.27;ReadPosRankSum=1.691;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5444,624,0 chrX 207693 . A C 1960 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.22;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1993,222,0 chrX 207695 . T A 2002 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.22;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2035,222,0 chrX 208362 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.02;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3338,378,0 chrX 208377 . G A 3138 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.94;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3171,348,0 chrX 208641 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.29;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2874,318,0 chrX 209220 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=24.01;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4466,510,0 chrX 209321 . T A 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=209;Dels=0.00;FS=2.910;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.369;QD=24.34;ReadPosRankSum=2.403;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:5087,555,0 chrX 209759 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.59;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1824,204,0 chrX 209763 . T C 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=3.039;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.817;QD=17.62;ReadPosRankSum=2.369;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1672,198,0 chrX 209814 . C T 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.279;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=1.667;QD=19.37;ReadPosRankSum=0.987;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2125,218,0 chrX 209866 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.192;QD=22.66;ReadPosRankSum=1.700;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2480,288,0 chrX 209880 . A T 2268 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.02;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2301,255,0 chrX 209941 . T C 2116 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.24;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2149,243,0 chrX 209951 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.54;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2477,270,0 chrX 210582 . T A 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=215;Dels=0.00;FS=3.412;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.073;QD=23.67;ReadPosRankSum=1.684;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5090,561,0 chrX 210603 . G A 4695.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.1101;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.46;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4695,537,0 chrX 210645 . A G 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.951;QD=21.69;ReadPosRankSum=1.698;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4446,504,0 chrX 210671 . A C 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.590;QD=21.38;ReadPosRankSum=1.679;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4169,477,0 chrX 210759 . G C 3683.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.05;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3683,414,0 chrX 210834 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.80;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3452,393,0 chrX 210923 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=149;Dels=0.00;FS=5.795;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.007;QD=20.70;ReadPosRankSum=2.952;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:3,144:149:99:3118,360,0 chrX 210936 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.86;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3275,372,0 chrX 211104 . A G 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=4.429;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-0.237;QD=21.89;ReadPosRankSum=1.713;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4027,456,0 chrX 211107 . G T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.35;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4067,447,0 chrX 211226 . A T 5161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=225;Dels=0.00;FS=3.228;HaplotypeScore=10.0498;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.717;QD=22.94;ReadPosRankSum=1.686;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5161,585,0 chrX 211287 . T C 5428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;DP=252;Dels=0.00;FS=8.448;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-1.290;QD=21.54;ReadPosRankSum=3.378;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:4,248:252:99:5428,633,0 chrX 211319 . T C 4297.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.66;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4297,489,0 chrX 211322 . A G 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=3.759;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-0.326;QD=20.78;ReadPosRankSum=1.715;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4218,471,0 chrX 211343 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=178;Dels=0.00;FS=2.859;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.242;QD=19.78;ReadPosRankSum=2.381;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3520,405,0 chrX 211421 . C A 4828.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.46;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4828,528,0 chrX 211498 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.71;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4190,474,0 chrX 211638 . A T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.02;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3637,408,0 chrX 211656 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.90;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3635,408,0 chrX 211764 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.56;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3202,354,0 chrX 211787 . A T 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.230;QD=22.15;ReadPosRankSum=1.659;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3201,357,0 chrX 211845 . C A 2474 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.09;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2507,282,0 chrX 211863 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.15;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2625,294,0 chrX 211924 . T A 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=122;Dels=0.02;FS=4.771;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.173;QD=19.74;ReadPosRankSum=1.703;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2441,264,0 chrX 211937 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=140;Dels=0.00;FS=5.692;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.419;QD=19.51;ReadPosRankSum=2.919;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:3,134:140:99:2764,309,0 chrX 212108 . A G 2710 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.03;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2743,318,0 chrX 212471 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3590,408,0 chrX 212831 . T C 2147 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.26;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2180,264,0 chrX 213175 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.81;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3901,441,0 chrX 213509 . C A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.75;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3871,426,0 chrX 213639 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.69;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3074,336,0 chrX 213641 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.15;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2975,330,0 chrX 213827 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.62;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2584,282,0 chrX 213944 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2507,282,0 chrX 214033 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3716,411,0 chrX 214163 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.41;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4190,492,0 chrX 214337 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.4486;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.71;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4537,501,0 chrX 214698 . A G 3032 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.97;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3065,351,0 chrX 215069 . C T 5911.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.2911;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.63;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5911,642,0 chrX 215224 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=25.16;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4352,492,0 chrX 215249 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.2026;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=24.41;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4540,507,0 chrX 215426 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=184;Dels=0.00;FS=6.067;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.186;QD=22.55;ReadPosRankSum=2.962;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4149,477,0 chrX 215480 . G A 2286 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.41;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2319,264,0 chrX 215481 . G A 2372 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.76;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2405,261,0 chrX 215482 . T C 2272 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.23;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2305,264,0 chrX 215637 . A G 2534 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.3466;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.03;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2567,294,0 chrX 215934 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.805;QD=23.58;ReadPosRankSum=1.666;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3725,423,0 chrX 215951 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=23.27;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3607,396,0 chrX 215960 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.12;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3562,384,0 chrX 215975 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.9035;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.97;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3647,399,0 chrX 216038 . C T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.3309;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.48;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3710,423,0 chrX 216132 . A C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=166;Dels=0.00;FS=5.886;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.302;QD=22.54;ReadPosRankSum=2.945;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:3,160:166:99:3742,423,0 chrX 216295 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.95;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3842,423,0 chrX 216313 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.0100;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.62;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3981,438,0 chrX 216509 . A G 4435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.549;QD=23.22;ReadPosRankSum=1.714;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4435,498,0 chrX 217028 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.7345;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.52;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2885,330,0 chrX 217316 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.685;QD=20.65;ReadPosRankSum=1.707;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2903,324,0 chrX 217327 . C A 2964 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.96;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2997,324,0 chrX 217367 . T C 2534 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.80;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2567,291,0 chrX 218068 . A G 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=232;Dels=0.00;FS=3.402;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.702;QD=22.08;ReadPosRankSum=1.717;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5123,588,0 chrX 218107 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.71;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4329,495,0 chrX 218143 . A G 3526.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=184;Dels=0.00;FS=2.992;HaplotypeScore=8.1240;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-1.982;QD=19.16;ReadPosRankSum=2.423;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3526,396,0 chrX 218146 . T C 3344.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.00;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3344,384,0 chrX 218152 . C T 3326.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=19.68;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3326,372,0 chrX 218206 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.216;DP=194;Dels=0.00;FS=14.421;HaplotypeScore=14.4477;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.985;QD=20.21;ReadPosRankSum=3.333;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:4,189:194:99:3920,444,0 chrX 218293 . C T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.99;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4397,501,0 chrX 218308 . G T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=21.28;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3661,414,0 chrX 218340 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.87;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3206,357,0 chrX 218473 . G A 3994.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.69;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3994,435,0 chrX 218503 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.91;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3688,411,0 chrX 218719 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.74;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4543,501,0 chrX 218728 . G A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.7850;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=19.37;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4319,477,0 chrX 218964 . A G 4818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=225;Dels=0.00;FS=2.900;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-2.417;QD=21.41;ReadPosRankSum=2.417;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4818,552,0 chrX 219051 . T C 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.007;DP=160;Dels=0.00;FS=15.093;HaplotypeScore=5.9133;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=1.123;QD=19.99;ReadPosRankSum=4.098;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:6,152:160:99:3232,369,0 chrX 219066 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=5.9522;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.56;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3598,405,0 chrX 219267 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8334;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.76;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4301,477,0 chrX 219321 . T A 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=3.277;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.113;QD=19.00;ReadPosRankSum=1.709;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2902,327,0 chrX 219324 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.25;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2843,330,0 chrX 219354 . A C 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=123;Dels=0.00;FS=6.057;HaplotypeScore=9.6768;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.762;QD=18.58;ReadPosRankSum=2.943;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2318,270,0 chrX 220326 . C A 2239 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=11.0854;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.08;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2272,249,0 chrX 220622 . G C 1617 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.7139;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.25;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1650,189,0 chrX 220637 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.98;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1722,198,0 chrX 221804 . A C 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=155;Dels=0.00;FS=5.887;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.059;QD=22.76;ReadPosRankSum=2.955;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3528,399,0 chrX 222688 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3271,372,0 chrX 222854 . A C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=3.608;HaplotypeScore=13.0016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.336;QD=22.99;ReadPosRankSum=1.683;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3251,366,0 chrX 223465 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.8901;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.52;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2503,276,0 chrX 225236 . A T 5074.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=22.0908;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.63;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5074,564,0 chrX 225353 . C A 4801.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.92;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4801,537,0 chrX 225498 . T A 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=3.345;HaplotypeScore=11.2208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.364;QD=21.36;ReadPosRankSum=1.689;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3460,405,0 chrX 225521 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.618;QD=22.06;ReadPosRankSum=1.671;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3817,429,0 chrX 225601 . A G 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=196;Dels=0.00;FS=2.977;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.361;QD=22.81;ReadPosRankSum=2.361;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4470,513,0 chrX 225914 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=170;Dels=0.00;FS=6.150;HaplotypeScore=23.0549;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.120;QD=16.48;ReadPosRankSum=2.421;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:2835,327,0 chrX 226023 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.8990;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.44;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3546,390,0 chrX 226353 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.40;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2981,345,0 chrX 226665 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.81;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1712,195,0 chrX 226802 . A T 1304 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.88;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1337,144,0 chrX 226827 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=50.2584;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=20.51;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1284,147,0 chrX 226843 . T C 1241 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.34;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1274,144,0 chrX 226899 . A G 1096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=56;Dels=0.00;FS=5.863;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.604;QD=19.57;ReadPosRankSum=1.668;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:1,53:56:99:1129,135,0 chrX 227061 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.69;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1812,204,0 chrX 227070 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.99;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1647,186,0 chrX 227303 . A T 2981 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.24;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3014,327,0 chrX 227560 . C G 3680.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.86;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3680,414,0 chrX 227777 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.626;QD=22.93;ReadPosRankSum=1.711;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,163:168:99:3853,438,0 chrX 227829 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=171;Dels=0.00;FS=3.114;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.530;QD=22.26;ReadPosRankSum=1.712;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3806,444,0 chrX 227961 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.31;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3771,411,0 chrX 228019 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.86;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3635,402,0 chrX 228032 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.36;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3299,378,0 chrX 228198 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.97;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3295,372,0 chrX 228508 . A T 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.297;QD=20.89;ReadPosRankSum=1.683;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1495,162,0 chrX 228732 . A G 967 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.15;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1000,114,0 chrX 228793 . A T 1151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=1.609;QD=20.55;ReadPosRankSum=1.547;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1184,135,0 chrX 229144 . A T 2449 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2482,273,0 chrX 229307 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2368,264,0 chrX 229619 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.91;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3483,390,0 chrX 229709 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.78;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3554,399,0 chrX 229834 . C T 4410.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.71;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4410,489,0 chrX 229877 . G A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.86;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4080,465,0 chrX 230024 . G A 4548.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.32;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4548,507,0 chrX 230069 . T C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=175;Dels=0.00;FS=14.721;HaplotypeScore=8.1582;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.530;QD=17.94;ReadPosRankSum=1.662;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:4,170:175:99:3172,360,0 chrX 230075 . T A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.5374;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.28;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3639,402,0 chrX 230256 . T G 4297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;MQRankSum=-0.583;QD=22.26;ReadPosRankSum=1.678;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4297,489,0 chrX 230257 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=22.46;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4313,483,0 chrX 230270 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=22.72;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4407,480,0 chrX 230372 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.53;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3514,384,0 chrX 230438 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-0.861;QD=20.79;ReadPosRankSum=1.713;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3721,423,0 chrX 230464 . G C 3429.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=19.37;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3429,402,0 chrX 230470 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=18.77;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3472,390,0 chrX 230483 . C G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=19.70;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3487,396,0 chrX 230565 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4024;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.32;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2573,303,0 chrX 230587 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.46;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2683,300,0 chrX 230666 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.28;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3059,336,0 chrX 230768 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.5444;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.65;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3042,333,0 chrX 230867 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=118;Dels=0.00;FS=10.075;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.804;QD=22.38;ReadPosRankSum=2.941;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2674,309,0 chrX 231171 . G A 6000.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.4406;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.19;SB=-3.260e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6000,663,0 chrX 231314 . A G 5135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=16.4596;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.598;QD=23.34;ReadPosRankSum=1.685;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5135,585,0 chrX 231417 . T G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=185;Dels=0.00;FS=7.782;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.107;QD=18.79;ReadPosRankSum=2.409;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3477,399,0 chrX 231423 . T A 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=189;Dels=0.00;FS=3.877;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.161;QD=18.66;ReadPosRankSum=1.603;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3527,402,0 chrX 231543 . T C 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.658;DP=131;Dels=0.00;FS=4.030;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.416;QD=20.73;ReadPosRankSum=0.363;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2748,297,0 chrX 231610 . C A 2809 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.02;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2842,312,0 chrX 231747 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.60;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3197,354,0 chrX 231892 . A G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=186;Dels=0.00;FS=3.021;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-2.329;QD=21.68;ReadPosRankSum=2.396;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4032,471,0 chrX 232021 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.54;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3223,363,0 chrX 232040 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.12;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3306,372,0 chrX 232656 . A G 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=83;Dels=0.00;FS=9.163;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.584;QD=19.40;ReadPosRankSum=3.349;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:4,79:83:99:1643,186,0 chrX 232663 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.21;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1599,183,0 chrX 233083 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.571;QD=23.24;ReadPosRankSum=-0.218;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3509,371,0 chrX 233256 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.61;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2904,321,0 chrX 233289 . A G 2925 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.50;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2958,336,0 chrX 233469 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=22.50;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2441,276,0 chrX 233472 . G A 2306 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.77;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2339,267,0 chrX 233503 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.20;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2726,297,0 chrX 233724 . C G 2042 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.22;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2075,243,0 chrX 233805 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.51;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3216,363,0 chrX 233808 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-1.614;QD=20.98;ReadPosRankSum=1.709;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3117,354,0 chrX 233826 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=5.4663;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.60;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3390,369,0 chrX 233923 . G A 2391 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.54;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2424,270,0 chrX 233924 . A C 2410 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.52;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2443,279,0 chrX 234121 . G A 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-1.693;QD=20.62;ReadPosRankSum=-0.236;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1868,207,0 chrX 234306 . G A 2005 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=20.25;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2038,222,0 chrX 234309 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.44;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2077,225,0 chrX 234318 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.47;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2080,225,0 chrX 234413 . T C 2867 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.12;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2900,327,0 chrX 234627 . G T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9561;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.12;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3570,393,0 chrX 234644 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.26;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3435,375,0 chrX 234695 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.08;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1900,207,0 chrX 234705 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.35;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1783,195,0 chrX 234824 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.55;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4082,465,0 chrX 235019 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3575,396,0 chrX 235177 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.11;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3281,366,0 chrX 235235 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=189;Dels=0.00;FS=7.855;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.296;QD=22.39;ReadPosRankSum=2.423;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4232,483,0 chrX 235337 . C A 6342.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.94;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:6342,723,0 chrX 235362 . G T 6162.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.57;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6162,678,0 chrX 235550 . C G 5989.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.39;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:5989,690,0 chrX 235574 . G A 5561.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.72;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5561,627,0 chrX 235604 . A C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=208;Dels=0.00;FS=2.430;HaplotypeScore=19.3748;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.597;QD=19.95;ReadPosRankSum=2.937;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4149,471,0 chrX 235667 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.45;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2911,327,0 chrX 235668 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.34;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3011,330,0 chrX 235976 . G C 4410.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.1614;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.16;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,193:199:99:4410,504,0 chrX 236393 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.9075;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.93;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3531,384,0 chrX 236421 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=135.3661;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.035;QD=21.53;ReadPosRankSum=1.667;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3444,387,0 chrX 236585 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.33;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3839,441,0 chrX 236615 . C A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0642;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.87;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4225,465,0 chrX 236901 . T A 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=175;Dels=0.00;FS=6.720;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=1.102;QD=14.81;ReadPosRankSum=2.239;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:2625,291,0 chrX 236905 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=14.68;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:2602,297,0 chrX 236912 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=15.30;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2955,333,0 chrX 237017 . A C 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=173;Dels=0.00;FS=2.839;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=-0.746;QD=19.86;ReadPosRankSum=2.364;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3436,393,0 chrX 237020 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=20.75;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3423,384,0 chrX 237032 . G C 3018 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=18.52;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3051,354,0 chrX 237035 . T G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.064;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=-1.518;QD=18.15;ReadPosRankSum=1.668;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:2973,339,0 chrX 237161 . C T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.97;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4157,471,0 chrX 237205 . T G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-0.367;QD=20.56;ReadPosRankSum=1.691;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3495,396,0 chrX 237213 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=19.25;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3349,384,0 chrX 237366 . G A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.17;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4882,549,0 chrX 237403 . G A 5231.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.1235;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.33;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5231,579,0 chrX 237480 . A G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=183;Dels=0.00;FS=6.688;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.926;QD=22.03;ReadPosRankSum=2.409;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4032,462,0 chrX 237740 . T C 4724.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=18.4623;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.77;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4724,531,0 chrX 237784 . G A 4863.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.6623;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.83;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4863,546,0 chrX 238089 . A G 2344 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.76;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2377,267,0 chrX 238135 . G T 2824 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.15;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2857,312,0 chrX 238262 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.72;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2950,324,0 chrX 238334 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.336;QD=20.52;ReadPosRankSum=1.711;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3448,387,0 chrX 238356 . G C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4380;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.91;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3639,408,0 chrX 238393 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;DP=182;Dels=0.00;FS=6.696;HaplotypeScore=16.3727;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.106;QD=19.99;ReadPosRankSum=2.368;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3638,420,0 chrX 238463 . T C 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.000;DP=214;Dels=0.00;FS=10.640;HaplotypeScore=18.9967;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.138;QD=22.10;ReadPosRankSum=4.135;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:6,206:214:99:4729,531,0 chrX 238738 . A G 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.694;QD=21.97;ReadPosRankSum=2.428;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5032,570,0 chrX 238867 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=165;Dels=0.00;FS=9.189;HaplotypeScore=16.6307;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=2.937;QD=20.40;ReadPosRankSum=3.406;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:4,160:165:99:3366,387,0 chrX 238948 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.755;DP=159;Dels=0.00;FS=10.998;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.252;QD=20.14;ReadPosRankSum=3.706;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:5,154:159:99:3236,375,0 chrX 238968 . A G 2951 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.23;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2984,342,0 chrX 238997 . G T 2598 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.7184;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.14;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2631,297,0 chrX 239123 . A T 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=-2.071;QD=18.92;ReadPosRankSum=2.396;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1755,198,0 chrX 239131 . T A 1691 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=18.58;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1724,198,0 chrX 239145 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=18.95;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1568,183,0 chrX 239174 . C A 1323 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=15.03;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1356,156,0 chrX 239180 . T C 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=89;Dels=0.00;FS=3.061;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;MQRankSum=-2.058;QD=15.28;ReadPosRankSum=2.394;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1393,162,0 chrX 239328 . C G 1533 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=16.14;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1566,180,0 chrX 239337 . A C 1381 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=13.81;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1414,162,0 chrX 239361 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=13.32;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1538,177,0 chrX 239386 . G A 1357 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=12.01;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1390,162,0 chrX 239387 . C G 1394 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=12.12;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1427,168,0 chrX 239413 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-1.146;QD=17.59;ReadPosRankSum=1.707;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2425,276,0 chrX 239558 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=23.39;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3322,372,0 chrX 239599 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.0065;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.71;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3647,417,0 chrX 239807 . T C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.528;DP=144;Dels=0.00;FS=5.883;HaplotypeScore=14.8299;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.486;QD=21.71;ReadPosRankSum=2.923;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3159,360,0 chrX 239917 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.06;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4060,441,0 chrX 239955 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.35;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2915,327,0 chrX 239959 . T C 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=3.374;HaplotypeScore=5.3383;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=1.302;QD=19.97;ReadPosRankSum=0.190;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2789,321,0 chrX 240040 . A G 2984 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.89;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3017,342,0 chrX 240082 . C A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.7051;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.50;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3424,384,0 chrX 240119 . G C 2560 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.32;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2593,300,0 chrX 240199 . A G 2251 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.65;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2284,267,0 chrX 240364 . T G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=151;Dels=0.00;FS=2.748;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.899;QD=21.79;ReadPosRankSum=2.351;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3291,387,0 chrX 240782 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.00;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3498,396,0 chrX 240847 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=149;Dels=0.00;FS=6.088;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.680;QD=22.93;ReadPosRankSum=2.817;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3416,387,0 chrX 241123 . T C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=146;Dels=0.00;FS=3.037;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.850;QD=21.45;ReadPosRankSum=2.416;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3165,360,0 chrX 241420 . A G 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-1.201;QD=19.59;ReadPosRankSum=1.704;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2462,276,0 chrX 241421 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.98;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2634,291,0 chrX 241543 . T A 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.4795;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.648;QD=24.89;ReadPosRankSum=1.704;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3095,339,0 chrX 242203 . T A 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=108;Dels=0.00;FS=3.037;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.308;QD=22.60;ReadPosRankSum=2.404;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2474,270,0 chrX 242249 . A G 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=118;Dels=0.00;FS=7.903;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.347;QD=24.07;ReadPosRankSum=2.407;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2873,327,0 chrX 242396 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.78;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4232,483,0 chrX 242534 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.07;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4613,504,0 chrX 242557 . A C 5002.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.67;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5002,582,0 chrX 242592 . C T 5392.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.8203;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.83;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5392,603,0 chrX 242867 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.06;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2855,315,0 chrX 242918 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.23;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2432,276,0 chrX 242936 . A G 2440 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.84;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2473,282,0 chrX 242954 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.05;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2840,318,0 chrX 243083 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.055;QD=22.74;ReadPosRankSum=1.706;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3058,345,0 chrX 243119 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.53;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3581,399,0 chrX 243326 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=178;Dels=0.00;FS=6.452;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.445;QD=21.94;ReadPosRankSum=2.408;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3906,459,0 chrX 243812 . C A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.35;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3420,378,0 chrX 244181 . C T 4691.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.81;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4691,519,0 chrX 244294 . A G 5601.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.04;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5601,636,0 chrX 244325 . T C 5588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=29.3527;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.340;QD=21.58;ReadPosRankSum=1.705;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,255:259:99:5588,645,0 chrX 244400 . A T 6933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=337;Dels=0.00;FS=4.377;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.344;QD=20.57;ReadPosRankSum=1.629;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:1,336:337:99:6933,768,0 chrX 244406 . C T 6830.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.57;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,330:332:99:6830,765,0 chrX 244474 . G A 7935.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=23.9268;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.42;SB=-3.682e+03 GT:AD:DP:GQ:PL 1/1:0,354:354:99:7935,888,0 chrX 244609 . G A 9176.01 filter AC=2;AF=1.00;AN=2;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=16.1030;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=23.71;SB=-4.341e+03 GT:AD:DP:GQ:PL 1/1:0,386:387:99:9176,1003,0 chrX 244637 . T C 7982.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=3.3809;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.93;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:0,364:364:99:7982,900,0 chrX 244650 . A G 7228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=354;Dels=0.00;FS=2.565;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=1.139;QD=20.42;ReadPosRankSum=2.946;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:3,350:354:99:7228,831,0 chrX 244689 . G A 6428.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=20.6014;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.54;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:6428,714,0 chrX 244726 . A G 5481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.6186;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.815;QD=21.33;ReadPosRankSum=1.705;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5481,621,0 chrX 244744 . A G 5643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=271;Dels=0.00;FS=4.934;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.266;QD=20.82;ReadPosRankSum=3.389;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:4,261:271:99:5643,648,0 chrX 245030 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.118;QD=22.43;ReadPosRankSum=1.653;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3948,450,0 chrX 245039 . G C 3648.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.52;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3648,423,0 chrX 245076 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.17;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3093,339,0 chrX 245099 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.16;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2603,282,0 chrX 245436 . T C 1262 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.69;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1295,147,0 chrX 245568 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.49;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3951,435,0 chrX 245918 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3359,369,0 chrX 246266 . G A 526 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=15.47;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,32:34:63:559,63,0 chrX 246303 . G T 1183 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.92;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1216,135,0 chrX 246321 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.04;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1632,186,0 chrX 246407 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.46;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1900,222,0 chrX 246420 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4573;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.54;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1799,201,0 chrX 246451 . C G 1688 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4597;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.59;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1721,192,0 chrX 246591 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.33;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3159,354,0 chrX 246652 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.54;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3337,369,0 chrX 247029 . A G 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.856;QD=22.54;ReadPosRankSum=1.613;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1994,231,0 chrX 247088 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.19;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2525,279,0 chrX 247233 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=113;Dels=0.00;FS=11.772;HaplotypeScore=15.4298;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.743;QD=21.78;ReadPosRankSum=2.317;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2494,285,0 chrX 247320 . T A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.49;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3773,414,0 chrX 247356 . A G 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.937;QD=22.98;ReadPosRankSum=1.647;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2837,324,0 chrX 247484 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=196;Dels=0.00;FS=3.193;HaplotypeScore=13.7972;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.036;QD=19.78;ReadPosRankSum=1.696;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3877,441,0 chrX 247585 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.42;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2732,312,0 chrX 247668 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.38;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3592,393,0 chrX 247893 . A G 2479 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.54;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2512,294,0 chrX 247938 . T G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.861;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.778;QD=22.51;ReadPosRankSum=1.697;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2239,255,0 chrX 247968 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.98;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2216,246,0 chrX 248007 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.7942;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.62;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2346,267,0 chrX 248190 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.241;QD=23.70;ReadPosRankSum=1.705;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3043,342,0 chrX 248378 . G C 2982 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.42;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3015,336,0 chrX 248379 . T C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.790;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.214;QD=19.48;ReadPosRankSum=1.685;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2896,336,0 chrX 248569 . G C 2950 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.18;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2983,342,0 chrX 248611 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=127;Dels=0.00;FS=4.516;HaplotypeScore=7.3830;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.605;QD=23.31;ReadPosRankSum=2.609;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:4,122:127:99:2993,339,0 chrX 248872 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.74;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2489,270,0 chrX 248893 . C A 1991 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.64;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2024,228,0 chrX 248957 . G A 1561 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.94;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1594,174,0 chrX 248967 . G C 1568 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.62;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1601,180,0 chrX 249011 . C G 1825 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.25;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1858,210,0 chrX 249054 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.11;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2111,231,0 chrX 249099 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.34;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1932,225,0 chrX 249294 . T C 2473 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.78;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2506,288,0 chrX 249343 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.71;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1878,213,0 chrX 249375 . C G 2099 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.33;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2132,249,0 chrX 249414 . A G 2543 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2576,303,0 chrX 249801 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.11;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3536,393,0 chrX 249879 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.71;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3316,366,0 chrX 249923 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.93;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3487,390,0 chrX 249990 . A G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.246;QD=22.18;ReadPosRankSum=1.711;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3638,408,0 chrX 250133 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.75;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3174,354,0 chrX 250151 . T C 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=142;Dels=0.00;FS=3.136;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-1.039;QD=17.54;ReadPosRankSum=1.683;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2524,291,0 chrX 250158 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=18.15;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2592,291,0 chrX 250174 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=17.69;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2297,258,0 chrX 250241 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=2.824;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.711;QD=22.35;ReadPosRankSum=2.416;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3308,375,0 chrX 250329 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.66;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4010,441,0 chrX 250353 . G A 4027.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=23.41;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4027,447,0 chrX 250419 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.96;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4110,462,0 chrX 250565 . A C 4425.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.46;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4425,507,0 chrX 250812 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.36;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2960,333,0 chrX 251498 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.59;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3282,372,0 chrX 251544 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.64;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3020,342,0 chrX 251581 . A G 2594 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.80;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2627,294,0 chrX 251673 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.28;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2506,279,0 chrX 251702 . C G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.460;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.710;QD=23.06;ReadPosRankSum=1.533;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2869,327,0 chrX 251780 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.92;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2209,249,0 chrX 251884 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.700;QD=21.97;ReadPosRankSum=1.029;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3405,396,0 chrX 252286 . A G 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=3.326;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.246;QD=21.87;ReadPosRankSum=1.702;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2526,288,0 chrX 252393 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.2150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2905,324,0 chrX 252496 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.18;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1538,171,0 chrX 252499 . C G 1428 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=15.52;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:92:99:1461,168,0 chrX 252564 . T C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.914;QD=19.18;ReadPosRankSum=1.705;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2469,288,0 chrX 252640 . G C 2011 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2044,234,0 chrX 252684 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.15;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2348,258,0 chrX 252846 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.60;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3516,393,0 chrX 252960 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.6455;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.60;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4059,447,0 chrX 252997 . G C 4022.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.72;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4022,465,0 chrX 253071 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.45;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3861,438,0 chrX 253108 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=1.410;QD=21.55;ReadPosRankSum=1.675;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3944,444,0 chrX 253125 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=3.003;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.044;QD=20.55;ReadPosRankSum=2.180;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3556,399,0 chrX 253150 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.72;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3356,390,0 chrX 253186 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.31;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3555,402,0 chrX 253312 . G A 3894.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.32;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3894,435,0 chrX 253339 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.17;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3203,351,0 chrX 253378 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=19.19;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2739,312,0 chrX 253393 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=15.89;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2543,288,0 chrX 253405 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=17.78;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3002,336,0 chrX 254075 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=149;Dels=0.00;FS=5.228;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.340;QD=22.73;ReadPosRankSum=2.953;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3387,384,0 chrX 254119 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3051,345,0 chrX 254247 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=24.54;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3362,381,0 chrX 254489 . G A 1988 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=20.08;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2021,222,0 chrX 254492 . T C 1906 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=19.65;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1939,219,0 chrX 254497 . T C 1735 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.847;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.768;QD=17.89;ReadPosRankSum=1.661;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1768,204,0 chrX 254503 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.03;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1796,204,0 chrX 254968 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=136;Dels=0.00;FS=8.107;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.890;QD=22.40;ReadPosRankSum=2.413;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3079,348,0 chrX 255203 . C G 2871 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.79;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2904,333,0 chrX 255496 . C A 3084 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3117,357,0 chrX 255746 . T C 2714 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2747,309,0 chrX 256123 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=179;Dels=0.00;FS=6.025;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.062;QD=22.61;ReadPosRankSum=2.961;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4047,459,0 chrX 256465 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=3.279;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.109;QD=23.70;ReadPosRankSum=1.697;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2403,267,0 chrX 256690 . A G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.162;QD=20.07;ReadPosRankSum=1.707;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2823,318,0 chrX 256883 . C A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=151.7418;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.25;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3422,387,0 chrX 256934 . G C 2218 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=13.61;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:2251,264,0 chrX 256964 . A T 1551 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=115.5973;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;QD=12.31;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1584,180,0 chrX 256977 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=13.20;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1723,189,0 chrX 256980 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=0;QD=12.63;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1637,180,0 chrX 256992 . A G 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=134;Dels=0.00;FS=7.493;HaplotypeScore=8.3472;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;MQRankSum=0.754;QD=14.50;ReadPosRankSum=2.412;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:1976,225,0 chrX 257035 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=17.56;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2491,276,0 chrX 257039 . T A 2469 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=17.03;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2502,282,0 chrX 257216 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=25.11;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3767,414,0 chrX 257259 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.65;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3068,342,0 chrX 257295 . G A 2280 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.16;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2313,255,0 chrX 257310 . G C 2120 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.4934;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.24;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2153,240,0 chrX 257383 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2213;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.61;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3371,372,0 chrX 257445 . G T 3189 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.3293;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.84;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3222,357,0 chrX 257831 . G C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.16;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3720,423,0 chrX 257958 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=3.802;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.924;QD=22.33;ReadPosRankSum=1.694;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4020,456,0 chrX 258022 . T A 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=172;Dels=0.00;FS=6.569;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.878;QD=21.62;ReadPosRankSum=2.421;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3718,432,0 chrX 258025 . T C 3662.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.54;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3662,414,0 chrX 258142 . G A 5259.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=18.0970;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.00;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,235:239:99:5259,576,0 chrX 258292 . G T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.02;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3476,378,0 chrX 258301 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=4.993;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.259;QD=21.09;ReadPosRankSum=1.689;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3395,384,0 chrX 258658 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.76;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2187,243,0 chrX 258835 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.19;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1760,198,0 chrX 258848 . A G 1930 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.10;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1963,222,0 chrX 258895 . G C 2320 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.09;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2353,267,0 chrX 258958 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=22.10;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2398,264,0 chrX 258965 . T C 2100 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.63;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2133,246,0 chrX 259182 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=17.75;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1755,195,0 chrX 259189 . A G 1670 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=15.75;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1703,198,0 chrX 259208 . G A 1438 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=12.95;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1471,165,0 chrX 259213 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=11.94;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1382,162,0 chrX 259228 . C A 1276 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;QD=10.91;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1309,153,0 chrX 259357 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5987;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.92;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3013,336,0 chrX 259441 . G C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6530;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=22.90;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3343,381,0 chrX 259540 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.52;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2240,252,0 chrX 259787 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.3400;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.60;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2818,306,0 chrX 259981 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.19;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2809,312,0 chrX 260023 . C A 2707 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.66;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2740,312,0 chrX 260075 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.42;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3981,447,0 chrX 260175 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.61;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3266,369,0 chrX 260269 . A G 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=174;Dels=0.00;FS=2.971;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.817;QD=16.17;ReadPosRankSum=2.393;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:2847,330,0 chrX 260294 . T C 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=185;Dels=0.00;FS=12.521;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.126;QD=12.02;ReadPosRankSum=2.929;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:2256,255,0 chrX 260320 . T C 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=173;Dels=0.00;FS=10.119;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.478;QD=12.88;ReadPosRankSum=2.335;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:2262,258,0 chrX 260357 . G C 2583 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.28;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2616,294,0 chrX 260428 . T C 2573 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.99;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2606,294,0 chrX 260588 . C A 2999 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.99;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3032,330,0 chrX 260627 . A T 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.634;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.732;QD=25.22;ReadPosRankSum=1.705;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3261,357,0 chrX 260920 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.78;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2423,276,0 chrX 261113 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2325,252,0 chrX 261196 . T C 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=87;Dels=0.00;FS=2.854;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.807;QD=23.71;ReadPosRankSum=2.393;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:2096,237,0 chrX 261296 . C A 2600 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2633,291,0 chrX 261358 . T A 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.202;QD=22.46;ReadPosRankSum=1.646;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2728,297,0 chrX 261413 . A G 2441 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.99;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2474,279,0 chrX 261474 . C G 2952 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.40;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2985,333,0 chrX 261529 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.35;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2531,288,0 chrX 261777 . A G 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.243;QD=22.77;ReadPosRankSum=1.702;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2629,300,0 chrX 261829 . G A 2180 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2213,246,0 chrX 261902 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.78;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2676,300,0 chrX 261994 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2573,282,0 chrX 262115 . A G 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=117;Dels=0.00;FS=8.933;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.787;QD=20.92;ReadPosRankSum=1.882;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2481,282,0 chrX 262236 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.35;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1831,210,0 chrX 262403 . A T 2993 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.74;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3026,336,0 chrX 262565 . T C 2873 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2906,342,0 chrX 262653 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.99;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3278,369,0 chrX 262668 . A G 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=152;Dels=0.00;FS=5.259;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.857;QD=20.27;ReadPosRankSum=3.377;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:4,146:152:99:3114,357,0 chrX 262698 . T A 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=135;Dels=0.00;FS=3.379;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.399;QD=20.50;ReadPosRankSum=1.681;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2801,318,0 chrX 262898 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.424;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.538;QD=23.41;ReadPosRankSum=1.659;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3347,372,0 chrX 263057 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.45;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2406,276,0 chrX 263085 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=7.0366;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.62;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2044,225,0 chrX 263129 . G C 2023 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.91;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2056,240,0 chrX 263201 . A G 2281 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2314,258,0 chrX 263244 . T C 2354 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.85;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2387,270,0 chrX 263508 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.16;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2901,327,0 chrX 263540 . C A 2745 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.29;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2778,318,0 chrX 263633 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.53;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2399,273,0 chrX 263687 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3399,378,0 chrX 263723 . G T 3046 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.73;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3079,345,0 chrX 264165 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.537;QD=21.21;ReadPosRankSum=1.710;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3393,387,0 chrX 264167 . C G 3389.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.05;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3389,381,0 chrX 264194 . T C 2672 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.65;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2705,306,0 chrX 264272 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3049,339,0 chrX 264413 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=112;Dels=0.00;FS=6.802;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.918;QD=21.64;ReadPosRankSum=2.405;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2457,282,0 chrX 264641 . C T 2796 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.71;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2829,321,0 chrX 264790 . A G 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.155;QD=22.71;ReadPosRankSum=1.688;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1827,207,0 chrX 264838 . G T 1976 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.20;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2009,228,0 chrX 265067 . A G 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=4.683;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.411;QD=21.64;ReadPosRankSum=1.696;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2132,243,0 chrX 265123 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.86;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2919,333,0 chrX 265324 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.88;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3661,408,0 chrX 265353 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=161;Dels=0.00;FS=2.583;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.681;QD=22.88;ReadPosRankSum=2.881;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3683,417,0 chrX 265422 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.0526;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.31;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3592,411,0 chrX 265456 . A T 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.7210;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.530;QD=23.22;ReadPosRankSum=1.709;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3414,375,0 chrX 265527 . A T 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.873;QD=19.08;ReadPosRankSum=1.673;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2265,249,0 chrX 265530 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.62;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2156,243,0 chrX 265751 . A C 1765 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=18.01;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1798,207,0 chrX 265893 . T C 710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.573;DP=101;Dels=0.00;FS=25.629;HaplotypeScore=69.7408;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.184;QD=7.03;ReadPosRankSum=1.810;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:23,78:101:36:743,36,0 chrX 265950 . T G 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.994;DP=99;Dels=0.00;FS=135.576;HaplotypeScore=20.2030;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=-0.783;QD=1.68;ReadPosRankSum=-3.376;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,37:99:99:196,0,989 chrX 266229 . A T 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=5.0399;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-0.272;QD=18.25;ReadPosRankSum=2.213;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1949,213,0 chrX 266235 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=19.08;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1941,216,0 chrX 266253 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=17.70;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1891,213,0 chrX 266273 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=16.26;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1675,192,0 chrX 266570 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.15;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2004,228,0 chrX 266638 . C A 1968 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.60;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2001,216,0 chrX 266741 . T A 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.9133;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.655;QD=24.52;ReadPosRankSum=1.655;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2240,252,0 chrX 266999 . T A 1668 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1701,189,0 chrX 267355 . A C 1556 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1589,177,0 chrX 267522 . A G 2209 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2242,246,0 chrX 267731 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1495,174,0 chrX 267824 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=107;Dels=0.00;FS=2.995;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.126;QD=22.31;ReadPosRankSum=2.357;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2420,276,0 chrX 267902 . A C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=124;Dels=0.00;FS=11.526;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.710;QD=22.58;ReadPosRankSum=2.410;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2833,324,0 chrX 267941 . C G 2526 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8042;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.78;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2559,294,0 chrX 267977 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2611,300,0 chrX 268513 . G T 2849 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.26;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2882,321,0 chrX 269086 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.346;QD=23.55;ReadPosRankSum=1.640;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3556,414,0 chrX 269458 . G T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.26;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3383,378,0 chrX 269475 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=151;Dels=0.00;FS=12.009;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.681;QD=20.19;ReadPosRankSum=3.791;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:5,146:151:99:3081,351,0 chrX 269821 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.49;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1787,198,0 chrX 269832 . T C 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=4.514;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.605;QD=20.84;ReadPosRankSum=1.648;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1763,195,0 chrX 269989 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.10;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2250,243,0 chrX 270173 . A G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.840;QD=21.95;ReadPosRankSum=1.698;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2294,261,0 chrX 270200 . G T 2659 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.12;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2692,300,0 chrX 270332 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=154;Dels=0.00;FS=8.938;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.084;QD=21.93;ReadPosRankSum=2.417;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3377,387,0 chrX 270695 . C G 2222 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5630;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.44;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2255,255,0 chrX 270752 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=6.608;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.406;QD=23.45;ReadPosRankSum=2.401;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2378,264,0 chrX 271477 . T C 2175 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.71;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2208,255,0 chrX 272069 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4135,471,0 chrX 272123 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.114;DP=152;Dels=0.00;FS=8.841;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.006;QD=21.67;ReadPosRankSum=3.367;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3294,372,0 chrX 272177 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.01;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3477,384,0 chrX 272191 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.3530;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.40;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3428,387,0 chrX 272233 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.21;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3598,402,0 chrX 272267 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=3.748;HaplotypeScore=12.8269;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.083;QD=22.21;ReadPosRankSum=1.714;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4287,492,0 chrX 272315 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.12;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4025,462,0 chrX 272381 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.68;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3923,467,0 chrX 272728 . T G 2833 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2866,324,0 chrX 273075 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.18;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3361,363,0 chrX 273348 . C T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.28;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4298,471,0 chrX 273525 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9690;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.44;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3659,402,0 chrX 273531 . C A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.8982;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.66;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3761,408,0 chrX 273972 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.0020;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.56;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3881,444,0 chrX 274173 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.9397;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.55;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3721,438,0 chrX 274203 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.49;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3829,438,0 chrX 274782 . T G 1842 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1875,213,0 chrX 275124 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.40;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3744,432,0 chrX 275159 . C T 4294.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.9604;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.72;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4294,477,0 chrX 275495 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.3389;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.27;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3585,393,0 chrX 275537 . T C 2915 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.43;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2948,333,0 chrX 275542 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.35;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2936,318,0 chrX 275588 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.62;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2054,228,0 chrX 275597 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.8241;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.69;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1802,204,0 chrX 275984 . G C 2345 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.13;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2378,276,0 chrX 276470 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.03;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2705,297,0 chrX 276699 . G T 2140 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.62;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2173,240,0 chrX 276704 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=92;Dels=0.00;FS=3.059;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-1.382;QD=19.82;ReadPosRankSum=1.693;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,88:92:99:1856,210,0 chrX 277465 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3020,348,0 chrX 277623 . T C 2819 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2852,318,0 chrX 277760 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.47;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3248,351,0 chrX 277936 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.5868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.87;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3256,363,0 chrX 278226 . A T 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=103;Dels=0.00;FS=6.046;HaplotypeScore=8.4404;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.830;QD=16.54;ReadPosRankSum=2.911;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:3,98:103:99:1737,192,0 chrX 278337 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2587,297,0 chrX 278411 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.606;QD=23.36;ReadPosRankSum=1.646;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2860,318,0 chrX 279038 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0907;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.41;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2880,327,0 chrX 279207 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=166;Dels=0.00;FS=13.076;HaplotypeScore=11.7770;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.163;QD=22.66;ReadPosRankSum=3.386;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3761,426,0 chrX 279278 . T C 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=150;Dels=0.00;FS=3.407;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.174;QD=20.00;ReadPosRankSum=1.686;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3033,351,0 chrX 279361 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.66;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3002,336,0 chrX 279703 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3755,417,0 chrX 280016 . C A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.97;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3355,387,0 chrX 280598 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.84;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2477,282,0 chrX 281003 . T C 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.360;QD=18.20;ReadPosRankSum=1.629;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1871,210,0 chrX 281006 . C A 1939 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=18.29;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1972,213,0 chrX 281056 . T C 2983 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.01;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3016,342,0 chrX 281289 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.05;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4137,459,0 chrX 281529 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.88;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4324,489,0 chrX 281676 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.88;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3869,441,0 chrX 282090 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.71;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4168,462,0 chrX 282456 . C T 4934.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.31;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4934,561,0 chrX 282525 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=3.164;HaplotypeScore=13.6282;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.542;QD=21.32;ReadPosRankSum=1.680;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4306,495,0 chrX 282672 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.5838;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.59;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4189,465,0 chrX 282729 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.41;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2923,330,0 chrX 282750 . G A 2828 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.92;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2861,315,0 chrX 282888 . A G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=141;Dels=0.00;FS=3.399;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.891;QD=23.70;ReadPosRankSum=1.707;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3341,378,0 chrX 283056 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.02;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2525,276,0 chrX 283074 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.51;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2152,234,0 chrX 283381 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.92;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1766,192,0 chrX 283387 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=16.85;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:1600,186,0 chrX 283605 . C G 1924 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.62;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1957,231,0 chrX 283650 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.01;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2002,219,0 chrX 283943 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.4526;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=18.84;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3279,357,0 chrX 284198 . A G 3099 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3132,369,0 chrX 284309 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.15;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2935,324,0 chrX 284375 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.32;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2934,330,0 chrX 284867 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.314;QD=23.65;ReadPosRankSum=1.712;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4044,456,0 chrX 284933 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3129,348,0 chrX 285086 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=170;Dels=0.00;FS=10.009;HaplotypeScore=14.2027;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.054;QD=21.43;ReadPosRankSum=2.958;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3643,429,0 chrX 285116 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.78;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3850,438,0 chrX 285278 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0373;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.41;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2537,291,0 chrX 285419 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=17.07;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1894,207,0 chrX 285492 . A C 1959 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.01;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1992,228,0 chrX 285553 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.64;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2175,240,0 chrX 285555 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.30;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2043,237,0 chrX 285967 . G T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0092;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.99;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3817,423,0 chrX 286028 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=164;Dels=0.00;FS=6.083;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.405;QD=20.19;ReadPosRankSum=2.896;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3311,384,0 chrX 286125 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=20.13;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3173,360,0 chrX 286218 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.067;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.552;QD=20.75;ReadPosRankSum=1.642;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3249,378,0 chrX 286349 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.61;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2791,312,0 chrX 286446 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.80;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3717,408,0 chrX 286569 . T A 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=129;Dels=0.00;FS=6.261;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.029;QD=21.34;ReadPosRankSum=2.412;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2786,312,0 chrX 286743 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.7564;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.23;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2990,330,0 chrX 287040 . A G 3602.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=187;Dels=0.00;FS=3.028;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.440;QD=19.26;ReadPosRankSum=2.423;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3602,411,0 chrX 287043 . A G 3533.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.791;QD=18.79;ReadPosRankSum=1.713;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,183:188:99:3533,405,0 chrX 287049 . A G 3547.01 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.57;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3547,408,0 chrX 287490 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.17;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2836,321,0 chrX 287517 . A G 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=113;Dels=0.00;FS=8.663;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.404;QD=21.38;ReadPosRankSum=2.406;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2449,279,0 chrX 287913 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.21;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3332,363,0 chrX 287994 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.74;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2816,321,0 chrX 287997 . T C 2714 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.71;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2747,315,0 chrX 288054 . A T 1669 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.75;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1702,195,0 chrX 288142 . T C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=3.551;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.170;QD=22.12;ReadPosRankSum=1.701;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2511,282,0 chrX 288231 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.82;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1601,183,0 chrX 288239 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=16.83;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1497,165,0 chrX 288255 . A G 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=8.029;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=0.609;QD=16.60;ReadPosRankSum=2.372;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1627,186,0 chrX 288267 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=15.89;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1733,201,0 chrX 288305 . T G 2096 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.47;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2129,240,0 chrX 288319 . A G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.424;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.530;QD=17.17;ReadPosRankSum=1.703;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2110,243,0 chrX 288609 . G A 5206.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.2659;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.25;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5206,582,0 chrX 288990 . T C 6099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=278;Dels=0.00;FS=3.018;HaplotypeScore=29.0785;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.841;QD=21.94;ReadPosRankSum=2.414;SB=-3.350e+03 GT:AD:DP:GQ:PL 1/1:2,272:278:99:6099,696,0 chrX 289229 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.10;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3223,369,0 chrX 289332 . T A 2493 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.95;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2526,282,0 chrX 289772 . A G 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=95;Dels=0.00;FS=6.647;HaplotypeScore=10.8114;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.432;QD=18.04;ReadPosRankSum=2.397;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1747,207,0 chrX 289825 . A T 2675 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.2757;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.57;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2708,300,0 chrX 290106 . G A 5852.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.9093;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.41;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5852,642,0 chrX 290358 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=233;Dels=0.00;FS=2.574;HaplotypeScore=16.6968;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.711;QD=17.29;ReadPosRankSum=2.935;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:4028,465,0 chrX 290364 . G T 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.008;DP=224;Dels=0.00;FS=4.850;HaplotypeScore=5.4959;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=1.313;QD=18.01;ReadPosRankSum=1.188;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4035,459,0 chrX 290406 . A G 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-1.338;QD=17.98;ReadPosRankSum=1.685;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:3974,462,0 chrX 290444 . A G 5353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=20.0383;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-0.680;QD=21.58;ReadPosRankSum=1.718;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5353,606,0 chrX 290515 . A G 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.035;DP=290;Dels=0.00;FS=2.086;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-1.107;QD=18.22;ReadPosRankSum=1.446;SB=-3.449e+03 GT:AD:DP:GQ:PL 1/1:3,287:290:99:5283,601,0 chrX 290520 . G A 5487.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=19.12;SB=-3.405e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:5487,606,0 chrX 290542 . G A 5143.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=10.7316;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.63;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:5143,567,0 chrX 290669 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.1569;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-1.058;QD=18.46;ReadPosRankSum=1.039;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:3488,370,0 chrX 290682 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=208;Dels=0.00;FS=2.565;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=-0.481;QD=17.45;ReadPosRankSum=2.908;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:3629,417,0 chrX 290709 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.5544;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=18.93;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4051,453,0 chrX 290730 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=18.47;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:3972,447,0 chrX 290883 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.5271;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.01;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2050,228,0 chrX 290907 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=21.28;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2033,222,0 chrX 291106 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=14.6604;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.95;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3266,360,0 chrX 291165 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.364;QD=21.26;ReadPosRankSum=1.667;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3402,390,0 chrX 291251 . T A 2815 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0613;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.96;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2848,315,0 chrX 291405 . G A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.16;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4377,498,0 chrX 291438 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=4.018;HaplotypeScore=15.7369;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.732;QD=22.15;ReadPosRankSum=1.589;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3787,432,0 chrX 291807 . A G 4456.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.3298;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.17;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4456,519,0 chrX 291846 . T C 4807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=230;Dels=0.00;FS=2.863;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.799;QD=20.90;ReadPosRankSum=2.428;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4807,558,0 chrX 291863 . T A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.0955;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.83;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5369,585,0 chrX 291927 . G A 5132.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.45;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5132,588,0 chrX 291961 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.8753;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.42;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4330,474,0 chrX 291966 . G T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=18.25;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4033,459,0 chrX 291981 . A G 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=229;Dels=0.00;FS=7.685;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.622;QD=18.40;ReadPosRankSum=2.363;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:2,225:229:99:4213,492,0 chrX 292117 . A G 7038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=314;Dels=0.00;FS=3.152;HaplotypeScore=11.1190;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.877;QD=22.41;ReadPosRankSum=1.721;SB=-3.763e+03 GT:AD:DP:GQ:PL 1/1:1,311:314:99:7038,798,0 chrX 292170 . A T 6295.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=20.8077;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.17;SB=-3.465e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6295,690,0 chrX 292319 . C T 5873.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=12.7018;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.25;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5873,645,0 chrX 292331 . T C 4983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=243;Dels=0.00;FS=8.285;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.047;QD=20.51;ReadPosRankSum=2.408;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,236:243:99:4983,585,0 chrX 292376 . A G 5222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=254;Dels=0.00;FS=2.908;HaplotypeScore=18.6461;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.842;QD=20.56;ReadPosRankSum=2.391;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:2,250:254:99:5222,614,0 chrX 292518 . A T 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=210;Dels=0.00;FS=10.074;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.928;QD=21.87;ReadPosRankSum=2.966;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4592,510,0 chrX 292545 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=194;Dels=0.00;FS=6.607;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.825;QD=20.34;ReadPosRankSum=2.373;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:3945,444,0 chrX 292580 . C T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.9939;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.95;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:3914,432,0 chrX 292593 . G T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=17.26;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3556,402,0 chrX 292611 . G T 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=1.400;QD=15.85;ReadPosRankSum=-0.404;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:3805,429,0 chrX 292616 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-1.703;QD=15.05;ReadPosRankSum=1.718;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:3612,426,0 chrX 292672 . A G 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=241;Dels=0.00;FS=6.075;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.669;QD=19.77;ReadPosRankSum=2.921;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:4764,543,0 chrX 292804 . G A 4825.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=23.42;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4825,528,0 chrX 292848 . T A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=22.04;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3746,414,0 chrX 292851 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=9.292;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-0.022;QD=20.30;ReadPosRankSum=2.392;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:3512,411,0 chrX 292896 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=178;Dels=0.00;FS=2.967;HaplotypeScore=26.5274;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;MQRankSum=-0.565;QD=19.13;ReadPosRankSum=2.394;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3406,407,0 chrX 292930 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.324;DP=182;Dels=0.00;FS=17.320;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;MQRankSum=-1.127;QD=21.74;ReadPosRankSum=4.426;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:7,175:182:99:3957,467,0 chrX 292953 . T G 3851.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;QD=21.51;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3851,458,0 chrX 292958 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=184;Dels=0.00;FS=5.707;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;MQRankSum=-0.361;QD=20.24;ReadPosRankSum=2.962;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3724,452,0 chrX 293043 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=20.18;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2898,339,0 chrX 293044 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=20.97;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2969,345,0 chrX 293059 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.85;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2284,270,0 chrX 293070 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;QD=13.15;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1979,239,0 chrX 293080 . G C 1539 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.7623;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;QD=10.91;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1572,189,0 chrX 293105 . C T 89.26 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.01;FS=0.000;HaplotypeScore=1054.4604;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=0.32;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:15:122,15,0 chrX 293109 . G A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.092;DP=288;Dels=0.00;FS=6.318;HaplotypeScore=537.3590;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=4.940;QD=0.12;ReadPosRankSum=-7.674;SB=-9.130e+02 GT:AD:DP:GQ:PL 0/1:157,131:288:65:65,0,921 chrX 293117 . T C 270.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;DP=312;Dels=0.00;FS=3.053;HaplotypeScore=3.8378;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=0;MQRankSum=1.936;QD=0.87;ReadPosRankSum=7.117;SB=-1.235e+03 GT:AD:DP:GQ:PL 0/1:155,155:312:99:300,0,793 chrX 293118 . A T 278.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.372;DP=312;Dels=0.00;FS=2.450;HaplotypeScore=2.8713;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=0;MQRankSum=2.818;QD=0.89;ReadPosRankSum=8.075;SB=-1.279e+03 GT:AD:DP:GQ:PL 0/1:156,156:312:99:308,0,785 chrX 293121 . G A 430.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.121;DP=324;Dels=0.00;FS=3.023;HaplotypeScore=2.6934;MLEAC=1;MLEAF=0.500;MQ=29.61;MQ0=0;MQRankSum=4.519;QD=1.33;ReadPosRankSum=8.416;SB=-1.390e+03 GT:AD:DP:GQ:PL 0/1:153,170:324:99:460,0,747 chrX 293133 . G A,T 1565.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=4.7229;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.31;MQ0=0;QD=4.59;SB=-3.221e+03 GT:AD:DP:GQ:PL 1/2:0,206,135:341:99:1625,685,559,940,0,845 chrX 293142 . C A 437.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.673;DP=365;Dels=0.00;FS=0.846;HaplotypeScore=4.0045;MLEAC=1;MLEAF=0.500;MQ=31.06;MQ0=0;MQRankSum=1.529;QD=1.20;ReadPosRankSum=-15.461;SB=-7.570e+02 GT:AD:DP:GQ:PL 0/1:241,123:365:99:467,0,1053 chrX 293271 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;QD=20.04;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3788,438,0 chrX 293368 . G A 5971.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=22.20;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:5971,657,0 chrX 293436 . G A 4800.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=21.72;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4800,528,0 chrX 293490 . A T 2414 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=15.18;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2447,273,0 chrX 293499 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;QD=13.55;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2228,258,0 chrX 293502 . T C 2172 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=13.24;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2205,264,0 chrX 293517 . T C 2526 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=14.03;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:2559,300,0 chrX 293664 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=169;Dels=0.00;FS=8.668;HaplotypeScore=16.1510;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.598;QD=20.99;ReadPosRankSum=3.407;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:4,164:169:99:3548,402,0 chrX 293700 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.61;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4121,465,0 chrX 293718 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.613;DP=216;Dels=0.00;FS=4.810;HaplotypeScore=14.3261;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-1.151;QD=18.41;ReadPosRankSum=3.801;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:5,211:216:99:3976,447,0 chrX 293844 . G C 3364.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.33;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3364,396,0 chrX 293868 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.68;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3425,384,0 chrX 293985 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=23.7201;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.86;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,196:203:99:4256,474,0 chrX 294039 . A G 3681.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.1897;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.31;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3681,417,0 chrX 294093 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.86;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2845,309,0 chrX 294232 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=23.40;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3346,375,0 chrX 294234 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.2191;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=1.320;QD=23.17;ReadPosRankSum=0.618;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3313,372,0 chrX 294251 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=21.51;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3131,354,0 chrX 294302 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.391;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;MQRankSum=-1.706;QD=22.08;ReadPosRankSum=1.706;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2926,336,0 chrX 294332 . C T 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=153;Dels=0.00;FS=3.037;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=-1.036;QD=19.42;ReadPosRankSum=2.257;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3005,339,0 chrX 294333 . T C 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=-0.607;QD=18.45;ReadPosRankSum=1.507;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2892,333,0 chrX 294432 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.13;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2716,300,0 chrX 294578 . A T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=23.72;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4720,525,0 chrX 294619 . T A 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=192;Dels=0.00;FS=2.675;HaplotypeScore=20.1998;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=-0.710;QD=23.70;ReadPosRankSum=2.424;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4550,504,0 chrX 294826 . G A 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=216;Dels=0.00;FS=13.150;HaplotypeScore=8.2760;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=2.435;QD=20.85;ReadPosRankSum=2.444;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:4503,504,0 chrX 294827 . A G 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=213;Dels=0.01;FS=2.575;HaplotypeScore=12.0178;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.322;QD=20.30;ReadPosRankSum=2.957;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4324,501,0 chrX 294947 . G T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.1755;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=20.98;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3399,378,0 chrX 294972 . T A 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=147;Dels=0.01;FS=3.514;HaplotypeScore=14.8826;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.068;QD=21.33;ReadPosRankSum=-0.475;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3169,348,0 chrX 295057 . T A 2495 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7202;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=20.45;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2528,276,0 chrX 295075 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=114.1727;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=18.08;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2383,261,0 chrX 295077 . A G 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=133;Dels=0.00;FS=3.146;HaplotypeScore=115.4175;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=1.679;QD=16.50;ReadPosRankSum=1.705;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2227,258,0 chrX 295147 . G T 2905 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=17.50;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2938,330,0 chrX 295148 . C T 2880 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=17.14;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2913,330,0 chrX 295154 . C T 2962 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=17.22;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2995,327,0 chrX 295184 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=17.10;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2479,279,0 chrX 295294 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=188;Dels=0.00;FS=3.297;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.529;QD=19.92;ReadPosRankSum=1.658;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3745,432,0 chrX 295391 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.605;QD=22.48;ReadPosRankSum=-1.180;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3732,426,0 chrX 295430 . G T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.7690;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.05;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3881,423,0 chrX 295604 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=7.177;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.102;QD=22.24;ReadPosRankSum=2.387;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3492,393,0 chrX 295664 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.23;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3833,423,0 chrX 295697 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.8185;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.88;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3775,432,0 chrX 295724 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.6189;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.50;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3315,378,0 chrX 295802 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.18;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4258,483,0 chrX 296106 . A T 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.062;QD=22.60;ReadPosRankSum=1.676;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4271,462,0 chrX 296529 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.7546;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.77;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3324,369,0 chrX 296771 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.8176;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.87;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3740,426,0 chrX 296872 . T A 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=194;Dels=0.00;FS=5.004;HaplotypeScore=6.6605;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.409;QD=21.76;ReadPosRankSum=3.415;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4222,462,0 chrX 296895 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.95;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4109,471,0 chrX 296919 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.67;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3953,456,0 chrX 296964 . T G 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.614;QD=19.35;ReadPosRankSum=1.710;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3129,360,0 chrX 296966 . A G 2973 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.06;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3006,351,0 chrX 297012 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2583;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=16.81;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2621,303,0 chrX 297025 . G A 2642 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=16.83;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2675,294,0 chrX 297043 . T C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=169;Dels=0.00;FS=5.651;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.953;QD=17.26;ReadPosRankSum=1.691;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2950,333,0 chrX 297146 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=19.0183;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=1.590;QD=21.80;ReadPosRankSum=2.381;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3946,447,0 chrX 297331 . T C 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.0079;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.192;QD=19.74;ReadPosRankSum=1.627;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2046,237,0 chrX 297365 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.61;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2321,270,0 chrX 297732 . T G 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.107;QD=22.68;ReadPosRankSum=1.696;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4423,498,0 chrX 297745 . C T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.53;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4589,504,0 chrX 297888 . G A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.3148;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.87;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4299,477,0 chrX 297976 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.16;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2847,321,0 chrX 298271 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.85;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2983,327,0 chrX 298682 . T G 2046 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2079,237,0 chrX 298833 . G T 1378 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.97;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1411,162,0 chrX 298915 . C T 542 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.57;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:66:575,66,0 chrX 298953 . T C 577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.418;QD=19.23;ReadPosRankSum=1.614;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:69:610,69,0 chrX 298955 . C T 604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=6.320;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.693;QD=20.13;ReadPosRankSum=1.502;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:72:637,72,0 chrX 299141 . T C 1801 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.23;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1834,207,0 chrX 299346 . G A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.99;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3454,387,0 chrX 299490 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=168;Dels=0.00;FS=13.972;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.140;QD=20.14;ReadPosRankSum=3.355;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:4,164:168:99:3384,384,0 chrX 299496 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.69;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3203,357,0 chrX 299551 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.10;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2342,258,0 chrX 299577 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.76;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3136,354,0 chrX 299757 . A G 2751 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.83;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2784,318,0 chrX 299820 . T C 2440 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.17;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2473,276,0 chrX 299874 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2300,255,0 chrX 299961 . A G 2352 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2385,276,0 chrX 300176 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.50;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3250,363,0 chrX 300297 . T A 3133 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3166,351,0 chrX 300402 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2913,327,0 chrX 300626 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.88;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2641,282,0 chrX 300732 . A T 2582 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.07;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2615,285,0 chrX 300756 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.75;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2378,270,0 chrX 300816 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.40;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3338,360,0 chrX 300846 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.2338;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.41;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3361,378,0 chrX 301020 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.551;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.846;QD=22.87;ReadPosRankSum=-0.123;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4825,538,0 chrX 301035 . G T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.45;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4478,489,0 chrX 301236 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.88;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3889,423,0 chrX 301476 . T G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=148;Dels=0.00;FS=3.353;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.203;QD=18.08;ReadPosRankSum=1.708;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:2709,312,0 chrX 301479 . T C 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.165;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.279;QD=19.12;ReadPosRankSum=1.684;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2787,315,0 chrX 301512 . A G 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.103;QD=17.09;ReadPosRankSum=1.709;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2614,303,0 chrX 301515 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=158;Dels=0.00;FS=3.802;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-1.732;QD=16.55;ReadPosRankSum=1.710;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:2648,303,0 chrX 301569 . A G 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=146;Dels=0.01;FS=5.567;HaplotypeScore=12.8739;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.497;QD=19.41;ReadPosRankSum=2.909;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2867,321,0 chrX 301677 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.90;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2964,327,0 chrX 301867 . T C 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.549;QD=23.56;ReadPosRankSum=1.704;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2931,330,0 chrX 302097 . A G 2954 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.80;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2987,354,0 chrX 302207 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=185;Dels=0.00;FS=6.092;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.896;QD=21.21;ReadPosRankSum=2.423;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3923,453,0 chrX 302882 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=120.2983;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.52;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3110,339,0 chrX 302943 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.919;QD=19.63;ReadPosRankSum=1.627;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2663,303,0 chrX 303003 . G C 3575.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3575,414,0 chrX 303097 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.50;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2822,324,0 chrX 303104 . A G 2655 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=19.81;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2688,303,0 chrX 303151 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=175;Dels=0.00;FS=3.680;HaplotypeScore=6.3460;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.692;QD=20.13;ReadPosRankSum=1.692;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3523,396,0 chrX 303215 . A T 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.197;HaplotypeScore=10.6009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.784;QD=23.61;ReadPosRankSum=1.677;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4486,501,0 chrX 303269 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.37;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3506,396,0 chrX 303316 . C A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.50;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3313,363,0 chrX 303556 . G A 4840.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.3867;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.30;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4840,555,0 chrX 303606 . G A 4644.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.88;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4644,522,0 chrX 303780 . T A 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=229;Dels=0.00;FS=4.104;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.945;QD=21.29;ReadPosRankSum=1.672;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4875,543,0 chrX 303882 . G A 5423.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.0297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5423,618,0 chrX 304262 . T A 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.396;QD=24.42;ReadPosRankSum=2.362;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3419,375,0 chrX 304503 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3507;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.73;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3796,426,0 chrX 304560 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.92;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3255,369,0 chrX 304659 . G T 3125 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6574;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.64;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3158,354,0 chrX 304829 . G C 3145 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.97;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3178,360,0 chrX 305004 . A G 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.025;DP=90;Dels=0.00;FS=14.923;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.029;QD=17.54;ReadPosRankSum=3.319;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:4,86:90:99:1612,183,0 chrX 305635 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=169;Dels=0.00;FS=2.941;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.839;QD=21.98;ReadPosRankSum=2.421;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3715,417,0 chrX 305904 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.45;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2704,297,0 chrX 305977 . G T 2853 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.01;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2886,324,0 chrX 306157 . A G 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.386;QD=22.16;ReadPosRankSum=1.707;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3113,354,0 chrX 306270 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.681;QD=23.10;ReadPosRankSum=1.708;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3372,384,0 chrX 306555 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=141;Dels=0.00;FS=2.627;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.500;QD=20.95;ReadPosRankSum=2.415;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2987,339,0 chrX 306623 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2398;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.10;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2592,294,0 chrX 306632 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.64;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2645,294,0 chrX 307287 . A G 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.247;QD=22.36;ReadPosRankSum=1.650;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2850,324,0 chrX 307910 . T G 1180 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.44;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1213,138,0 chrX 307956 . A T 1554 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=17.46;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1587,183,0 chrX 307977 . A T 1798 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=15.63;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1831,207,0 chrX 307980 . G C 1699 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=13.70;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,119:124:99:1732,198,0 chrX 308004 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=15.23;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2195,252,0 chrX 308090 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=1;MQRankSum=-0.208;QD=24.10;ReadPosRankSum=2.400;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3591,405,0 chrX 308132 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.69;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3449,393,0 chrX 308184 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=0.058;QD=18.84;ReadPosRankSum=1.713;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3392,390,0 chrX 308193 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=20.02;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3844,426,0 chrX 308229 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.8384;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.80;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3873,441,0 chrX 308559 . A G 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.785;QD=23.73;ReadPosRankSum=1.614;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2809,318,0 chrX 308682 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.97;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1871,210,0 chrX 308751 . T C 1765 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.01;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1798,204,0 chrX 308763 . A G 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.464;QD=20.62;ReadPosRankSum=2.322;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1641,183,0 chrX 308766 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.88;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1578,177,0 chrX 308880 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.70;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1589,171,0 chrX 308909 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.68;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1334,144,0 chrX 308946 . A G 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.239;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.778;QD=22.62;ReadPosRankSum=1.682;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1594,180,0 chrX 308999 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.36;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1972,219,0 chrX 309105 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.72;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2678,291,0 chrX 309239 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.23;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2797,318,0 chrX 309329 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=133;Dels=0.00;FS=10.493;HaplotypeScore=9.1368;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.705;QD=21.92;ReadPosRankSum=2.902;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2948,333,0 chrX 309348 . T G 2601 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.86;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2634,300,0 chrX 309483 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.295;QD=20.71;ReadPosRankSum=1.674;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2498,276,0 chrX 309490 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=22.71;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2622,282,0 chrX 309498 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.16;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2530,273,0 chrX 309882 . A G 2390 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8872;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.93;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2423,282,0 chrX 309948 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.10;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3471,390,0 chrX 310000 . T C 358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.796;DP=117;Dels=0.00;FS=2.547;HaplotypeScore=190.2243;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.159;QD=3.06;ReadPosRankSum=-6.362;SB=-1.200e+01 GT:AD:DP:GQ:PL 1/1:100,17:117:45:391,45,0 chrX 310003 . T C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;DP=113;Dels=0.00;FS=5.320;HaplotypeScore=190.2243;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=0.828;QD=0.15;ReadPosRankSum=5.313;SB=-6.840e+02 GT:AD:DP:GQ:PL 0/1:11,102:113:47:47,0,161 chrX 310187 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.85;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3605,414,0 chrX 310498 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.12;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2648,306,0 chrX 310503 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=19.88;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2558,294,0 chrX 310519 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-0.056;QD=19.58;ReadPosRankSum=1.620;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2461,276,0 chrX 310533 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.03;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2355,258,0 chrX 310656 . T C 2217 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.74;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2250,255,0 chrX 310812 . G A 1464 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=20.62;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1497,177,0 chrX 310843 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2375,261,0 chrX 310994 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.47;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4388,489,0 chrX 311129 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.5514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.672;QD=21.68;ReadPosRankSum=1.697;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4249,489,0 chrX 311627 . A C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.189;QD=22.92;ReadPosRankSum=1.705;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2990,342,0 chrX 311660 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.50;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3120,339,0 chrX 311828 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.260;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.554;QD=21.10;ReadPosRankSum=1.630;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2903,324,0 chrX 311840 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7469;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.75;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3127,336,0 chrX 311915 . T C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=126;Dels=0.00;FS=2.802;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.420;QD=21.99;ReadPosRankSum=2.372;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2804,321,0 chrX 312326 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.50;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4343,492,0 chrX 312403 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=194;Dels=0.00;FS=5.759;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.057;QD=20.66;ReadPosRankSum=2.932;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4008,459,0 chrX 312482 . T G 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.463;QD=21.53;ReadPosRankSum=1.636;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3875,441,0 chrX 312708 . G T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=165.1304;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=0.27;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:9:79,9,0 chrX 312710 . C G 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=159.4089;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=0.52;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:169:15:121,15,0 chrX 312711 . G A 161.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=171;Dels=0.00;FS=18.306;HaplotypeScore=159.4040;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;MQRankSum=4.203;QD=0.94;ReadPosRankSum=-4.967;SB=-5.903e+01 GT:AD:DP:GQ:PL 1/1:161,10:171:24:194,24,0 chrX 312728 . T G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=5.089;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;MQRankSum=-0.245;QD=18.98;ReadPosRankSum=1.713;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3492,393,0 chrX 312940 . T G 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.677;DP=103;Dels=0.00;FS=6.118;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=-0.853;QD=18.71;ReadPosRankSum=2.932;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1960,222,0 chrX 312946 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=19.42;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2014,222,0 chrX 313030 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3612,402,0 chrX 313808 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.0885;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.25;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4419,489,0 chrX 313947 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=172;Dels=0.00;FS=3.757;HaplotypeScore=13.8119;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.388;QD=21.09;ReadPosRankSum=1.611;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3627,411,0 chrX 314406 . C G 4472.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.05;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4472,501,0 chrX 314624 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-1.538;QD=22.14;ReadPosRankSum=1.646;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3564,411,0 chrX 314642 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.885;QD=20.67;ReadPosRankSum=1.713;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3804,444,0 chrX 314885 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.82;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2915,315,0 chrX 315022 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=9.6010;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.76;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3710,411,0 chrX 315237 . T C 4784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=224;Dels=0.00;FS=6.118;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.474;QD=21.36;ReadPosRankSum=2.373;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4784,552,0 chrX 315327 . T C 4780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=230;Dels=0.00;FS=6.053;HaplotypeScore=19.3724;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.784;QD=20.78;ReadPosRankSum=2.943;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:3,225:230:99:4780,549,0 chrX 315571 . T C 2985 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.5223;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.89;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3018,339,0 chrX 315587 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.199;QD=18.32;ReadPosRankSum=1.708;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2671,303,0 chrX 315842 . C T 4716.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.82;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4716,519,0 chrX 315866 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.31;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4593,504,0 chrX 315888 . T C 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;DP=210;Dels=0.00;FS=5.162;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.615;QD=21.07;ReadPosRankSum=3.335;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:4,205:210:99:4425,504,0 chrX 316551 . T G 5879.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5879,675,0 chrX 316590 . T C 5748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.0791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.486;QD=22.54;ReadPosRankSum=1.705;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:1,252:255:99:5748,654,0 chrX 317045 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.40;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2380,264,0 chrX 317046 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.94;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2406,264,0 chrX 317150 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.58;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2364,261,0 chrX 317223 . T G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.610;QD=23.25;ReadPosRankSum=1.699;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2497,288,0 chrX 317257 . C G 3618.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.19;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3618,411,0 chrX 317305 . T A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.80;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3750,408,0 chrX 317491 . T A 5739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.518;QD=23.62;ReadPosRankSum=1.718;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5739,648,0 chrX 317989 . C T 5912.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=17.4803;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.65;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:0,258:261:99:5912,654,0 chrX 318240 . A G 5497.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=18.4824;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.90;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5497,630,0 chrX 318505 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=181;Dels=0.00;FS=3.583;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.246;QD=21.41;ReadPosRankSum=1.713;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3875,441,0 chrX 318519 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.951;DP=183;Dels=0.00;FS=2.637;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.655;QD=20.70;ReadPosRankSum=1.194;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3788,421,0 chrX 318543 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.72;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3979,441,0 chrX 318588 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=19.76;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3933,426,0 chrX 318592 . C G 3547.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.19;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3547,399,0 chrX 318613 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=17.86;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3230,357,0 chrX 318628 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=3.925;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.680;QD=17.97;ReadPosRankSum=1.710;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2891,327,0 chrX 318819 . C T 3805.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.51;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3805,432,0 chrX 318923 . T C 4757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.680;QD=23.67;ReadPosRankSum=1.715;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4757,537,0 chrX 318987 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3775,417,0 chrX 319218 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2329,252,0 chrX 319398 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=136;Dels=0.00;FS=2.540;HaplotypeScore=10.3272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.111;QD=23.35;ReadPosRankSum=2.874;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3208,360,0 chrX 319781 . G T 2310 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.62;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2343,264,0 chrX 319840 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=89.0741;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.17;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2123,237,0 chrX 319952 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.7760;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.655;QD=23.89;ReadPosRankSum=2.376;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3211,360,0 chrX 320192 . T C 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=3.645;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.555;QD=20.90;ReadPosRankSum=1.698;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4348,495,0 chrX 320259 . C T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.07;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4016,447,0 chrX 320639 . T C 3990.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.67;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3990,447,0 chrX 320686 . A G 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=197;Dels=0.00;FS=2.973;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.305;QD=22.45;ReadPosRankSum=2.400;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4423,504,0 chrX 320788 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.52;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3947,447,0 chrX 320812 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.49;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3771,414,0 chrX 320873 . G C 3403.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.39;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3403,384,0 chrX 320888 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.39;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3313,369,0 chrX 321044 . G C 2648 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.21;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2681,306,0 chrX 321261 . G C 2272 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.23;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2305,264,0 chrX 321279 . A G 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.717;QD=21.89;ReadPosRankSum=1.627;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2200,249,0 chrX 321299 . T C 1864 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=20.48;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1897,216,0 chrX 321305 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=19.39;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1836,201,0 chrX 321374 . T C 1671 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=18.36;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1704,192,0 chrX 321381 . C T 1874 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=20.15;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1907,207,0 chrX 321383 . G A 1833 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=19.29;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1866,210,0 chrX 321406 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=19.25;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2073,222,0 chrX 321433 . T C 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=4.004;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=-1.535;QD=16.97;ReadPosRankSum=1.693;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1543,174,0 chrX 321436 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=17.36;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1509,165,0 chrX 321602 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=23.85;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2323,258,0 chrX 322043 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.42;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2609,288,0 chrX 322451 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.6562;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.06;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3269,360,0 chrX 322480 . G T 3195 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.02;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3228,366,0 chrX 322508 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.50;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2806,309,0 chrX 322604 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.26;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2615,285,0 chrX 322612 . A G 2645 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.50;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2678,309,0 chrX 322729 . A G 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.8340;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=1.049;QD=14.84;ReadPosRankSum=2.408;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:1591,195,0 chrX 322730 . G A 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.5394;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.775;QD=15.03;ReadPosRankSum=1.534;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1611,195,0 chrX 322763 . C A 1672 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.79;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1705,192,0 chrX 322997 . T C 2520 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.32;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2553,297,0 chrX 323004 . T C 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=122;Dels=0.00;FS=3.046;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.673;QD=19.57;ReadPosRankSum=1.560;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2421,273,0 chrX 323077 . C A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.52;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3325,381,0 chrX 323078 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=161;Dels=0.00;FS=4.874;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.070;QD=20.58;ReadPosRankSum=2.525;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3313,375,0 chrX 323243 . A G 4070.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.53;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4070,465,0 chrX 323333 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.529;QD=21.35;ReadPosRankSum=1.711;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3566,405,0 chrX 323823 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5573;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.76;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3483,399,0 chrX 324913 . T C 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.013;QD=21.83;ReadPosRankSum=2.343;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2041,237,0 chrX 324924 . T C 2066 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.30;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2099,243,0 chrX 325190 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.68;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3646,405,0 chrX 325369 . A T 2654 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.0532;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.88;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2687,297,0 chrX 325803 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.89;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3908,429,0 chrX 326192 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.35;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3005,327,0 chrX 326422 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.27;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3244,363,0 chrX 327501 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.26;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4597,501,0 chrX 327851 . A G 2550 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2490;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.77;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2583,291,0 chrX 328338 . T C 3108 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.37;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3141,363,0 chrX 328430 . A G 2581 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.65;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2614,303,0 chrX 328451 . A G 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=110;Dels=0.00;FS=3.045;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.376;QD=19.27;ReadPosRankSum=2.404;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2153,252,0 chrX 328664 . A G 3074 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.50;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3107,366,0 chrX 328877 . G T 4294.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4294,474,0 chrX 328971 . G A 4547.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.6692;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.86;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4547,522,0 chrX 329323 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.3085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2384,258,0 chrX 329633 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.55;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2123,237,0 chrX 329730 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.71;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3588,414,0 chrX 330001 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=147;Dels=0.00;FS=6.106;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.660;QD=22.54;ReadPosRankSum=2.910;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:3314,378,0 chrX 330191 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.503;QD=19.22;ReadPosRankSum=1.675;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2378,279,0 chrX 330470 . C G 2266 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.00;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2299,261,0 chrX 331024 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=13.58;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:2817,309,0 chrX 332595 . A T 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=-0.080;QD=19.22;ReadPosRankSum=1.705;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2532,285,0 chrX 332597 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=20.57;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2686,288,0 chrX 332621 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=16.51;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2344,267,0 chrX 332629 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=17.30;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2524,279,0 chrX 332672 . A T 3179 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.75;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3212,351,0 chrX 332735 . G A 5073.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.3015;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.04;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5073,561,0 chrX 332945 . G A 6103.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=15.9179;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.19;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:6103,675,0 chrX 333136 . C T 4836.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=19.9614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4836,528,0 chrX 333385 . G A 4595.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=19.9276;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.88;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4595,504,0 chrX 333992 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.9431;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.78;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3553,396,0 chrX 334125 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.54;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3461,381,0 chrX 334204 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=172;Dels=0.00;FS=6.961;HaplotypeScore=12.8871;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-2.220;QD=23.38;ReadPosRankSum=2.421;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4021,465,0 chrX 334468 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.3525;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.05;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4034,441,0 chrX 334858 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.85;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4113,462,0 chrX 335215 . T A 2350 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2383,273,0 chrX 335305 . A G 2988 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8518;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.71;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3021,342,0 chrX 335788 . C A 802 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=4.3656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.13;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:93:835,93,0 chrX 336181 . C A 4510.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.12;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4510,492,0 chrX 336365 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=6.236;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.327;QD=22.06;ReadPosRankSum=2.423;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4059,468,0 chrX 336383 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.51;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4187,459,0 chrX 336512 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.77;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4288,483,0 chrX 336524 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.78;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4396,477,0 chrX 336551 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.97;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3714,420,0 chrX 336614 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=161;Dels=0.00;FS=11.342;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.531;QD=20.05;ReadPosRankSum=2.956;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3262,369,0 chrX 337122 . T G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.43;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3327,372,0 chrX 337220 . C G 2022 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.74;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2055,234,0 chrX 337222 . A C 2032 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.62;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2065,237,0 chrX 337263 . A C 1924 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.8766;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.68;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1957,219,0 chrX 337299 . A C 2321 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.18;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2354,267,0 chrX 337300 . C A 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.431;QD=20.03;ReadPosRankSum=1.702;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2337,261,0 chrX 337345 . A C 2220 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.47;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2253,255,0 chrX 337436 . A T 2350 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.82;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2383,276,0 chrX 337551 . T C 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=176;Dels=0.00;FS=2.380;HaplotypeScore=7.1101;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.185;QD=23.60;ReadPosRankSum=3.350;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:4,171:176:99:4153,471,0 chrX 337579 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.37;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3975,438,0 chrX 337582 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.85;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3837,432,0 chrX 338561 . T C 5977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=287;Dels=0.00;FS=6.376;HaplotypeScore=19.6937;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.380;QD=20.83;ReadPosRankSum=2.381;SB=-3.419e+03 GT:AD:DP:GQ:PL 1/1:2,285:287:99:5977,687,0 chrX 338643 . T A 7880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=351;Dels=0.00;FS=6.677;HaplotypeScore=19.0669;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.276;QD=22.45;ReadPosRankSum=2.408;SB=-3.928e+03 GT:AD:DP:GQ:PL 1/1:2,349:351:99:7880,894,0 chrX 338765 . T C 6430.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=348;Dels=0.00;FS=2.981;HaplotypeScore=25.5548;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=23;MQRankSum=-1.177;QD=18.48;ReadPosRankSum=2.427;SB=-3.669e+03 GT:AD:DP:GQ:PL 1/1:15,332:348:99:6430,735,0 chrX 339013 . A C 7221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=345;Dels=0.00;FS=2.992;HaplotypeScore=19.4434;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=2;MQRankSum=2.291;QD=20.93;ReadPosRankSum=2.435;SB=-3.752e+03 GT:AD:DP:GQ:PL 1/1:4,339:345:99:7221,831,0 chrX 339206 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.97;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4529,504,0 chrX 339302 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.2023;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.105;QD=22.14;ReadPosRankSum=2.267;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3897,438,0 chrX 339346 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3675,417,0 chrX 339657 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.69;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2853,315,0 chrX 339669 . C G 2509 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.15;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2542,300,0 chrX 340014 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.8493;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.29;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3960,450,0 chrX 340095 . C T 3794.01 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.86;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3794,417,0 chrX 340103 . G A 3730.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=177;Dels=0.01;FS=3.622;HaplotypeScore=16.8423;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-1.653;QD=21.07;ReadPosRankSum=1.158;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3730,385,0 chrX 340104 . C T 3756.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=177;Dels=0.01;FS=3.565;HaplotypeScore=16.8423;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.505;QD=21.22;ReadPosRankSum=1.198;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3756,386,0 chrX 340506 . C A 2557 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.04;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2590,282,0 chrX 341121 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.19;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3662,417,0 chrX 341205 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=16.6636;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.96;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3719,408,0 chrX 341279 . T C 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=200;Dels=0.00;FS=2.933;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.254;QD=21.02;ReadPosRankSum=2.350;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4203,486,0 chrX 341290 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.3693;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.39;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4107,444,0 chrX 341296 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.01;FS=0.000;HaplotypeScore=4.1910;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.29;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3795,429,0 chrX 341422 . C G 5347.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.0764;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.09;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:5347,606,0 chrX 341469 . G A 5341.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.02;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5341,606,0 chrX 341586 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.14;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4473,522,0 chrX 341631 . G C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4924;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=20.29;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3734,438,0 chrX 342031 . A T 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=140;Dels=0.00;FS=3.019;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.325;QD=22.17;ReadPosRankSum=2.327;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3137,345,0 chrX 342263 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.11;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1891,216,0 chrX 342290 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.15;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1544,177,0 chrX 342457 . C G 2671 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.50;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2704,306,0 chrX 342558 . A G 2118 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.97;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2151,243,0 chrX 342564 . G C 2126 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.87;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2159,249,0 chrX 342956 . A T 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=186;Dels=0.00;FS=2.872;HaplotypeScore=11.1948;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.354;QD=22.82;ReadPosRankSum=2.397;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4245,474,0 chrX 343571 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.91;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4202,462,0 chrX 343574 . A G 3885.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.77;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3885,444,0 chrX 344460 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.62;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2914,327,0 chrX 344492 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=130;Dels=0.00;FS=8.729;HaplotypeScore=11.5126;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.349;QD=22.18;ReadPosRankSum=3.376;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:4,124:130:99:2917,339,0 chrX 344732 . T C 3069 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.74;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3102,351,0 chrX 344742 . A G 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.366;QD=20.29;ReadPosRankSum=1.683;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2955,339,0 chrX 344747 . A C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.638;QD=19.41;ReadPosRankSum=1.685;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2886,324,0 chrX 344828 . G T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=22.81;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3627,408,0 chrX 344873 . C T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=25.09;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3563,393,0 chrX 344909 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=24.26;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2920,318,0 chrX 344939 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.95;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2787,312,0 chrX 345047 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=21.27;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3297,369,0 chrX 345062 . A T 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=3.206;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.861;QD=17.92;ReadPosRankSum=1.667;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2883,318,0 chrX 345066 . C A 2659 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=17.15;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2692,288,0 chrX 345085 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=13.34;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2008,219,0 chrX 345099 . C A 1297 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=9.61;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1330,147,0 chrX 345117 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=8.02;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1067,123,0 chrX 345119 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=7.11;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:986,111,0 chrX 345365 . C T 4676.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=24.48;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4676,510,0 chrX 345392 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.32;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3862,444,0 chrX 345962 . A G 2054 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2087,246,0 chrX 346113 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.99;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3766,426,0 chrX 346401 . A G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.518;QD=21.64;ReadPosRankSum=1.661;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2154,243,0 chrX 346488 . T C 2524 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.86;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2557,294,0 chrX 346495 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.96;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2508,279,0 chrX 346529 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.07;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3079,333,0 chrX 346858 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=139;Dels=0.00;FS=3.036;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.946;QD=23.95;ReadPosRankSum=2.414;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3329,378,0 chrX 347630 . C G 3288.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9901;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.42;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3288,387,0 chrX 347852 . G A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.6837;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.90;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4213,477,0 chrX 347951 . T A 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.8367;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.099;QD=24.75;ReadPosRankSum=1.712;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4380,474,0 chrX 348292 . A G 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=8.160;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.165;QD=23.26;ReadPosRankSum=2.423;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4373,498,0 chrX 348560 . A C 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.167;QD=18.86;ReadPosRankSum=2.397;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2673,318,0 chrX 348584 . A G 2670 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.08;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2703,306,0 chrX 348652 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.276;QD=18.88;ReadPosRankSum=2.418;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2960,342,0 chrX 348689 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.17;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2525,279,0 chrX 348750 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.22;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2033,222,0 chrX 348770 . T C 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=1.159;QD=18.61;ReadPosRankSum=2.402;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1950,225,0 chrX 348792 . T C 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.639;QD=18.19;ReadPosRankSum=2.874;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:3,117:122:99:2252,258,0 chrX 348930 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.73;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2999,330,0 chrX 349396 . T A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=12.4321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.83;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3384,384,0 chrX 349631 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.520;DP=164;Dels=0.00;FS=7.454;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.172;QD=23.18;ReadPosRankSum=3.768;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:5,159:164:99:3801,438,0 chrX 350244 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.7419;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4104,453,0 chrX 350351 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3972,450,0 chrX 350627 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2386;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.83;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3538,393,0 chrX 351056 . T C 3043 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.1945;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.15;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3076,363,0 chrX 351163 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.54;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2851,315,0 chrX 351259 . T C 2603 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.04;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2636,294,0 chrX 351479 . A G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.358;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.773;QD=22.57;ReadPosRankSum=1.705;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2990,342,0 chrX 351611 . T G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.496;QD=18.93;ReadPosRankSum=1.706;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2551,288,0 chrX 351617 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8635;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.59;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2548,285,0 chrX 352052 . C A 3036 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.51;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3069,345,0 chrX 352196 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=150;Dels=0.00;FS=10.326;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.318;QD=22.31;ReadPosRankSum=2.939;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3346,384,0 chrX 352608 . G A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.29;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3368,372,0 chrX 352620 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.02;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3265,375,0 chrX 353165 . C T 2241 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2274,258,0 chrX 353336 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.5233;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.66;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2662,303,0 chrX 353471 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2164,240,0 chrX 353878 . A C 2563 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=22.48;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2596,294,0 chrX 353888 . A T 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.617;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;MQRankSum=0.166;QD=21.83;ReadPosRankSum=1.672;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2543,285,0 chrX 353927 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.92;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2773,306,0 chrX 354030 . T A 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.346;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.644;QD=21.52;ReadPosRankSum=1.703;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2637,294,0 chrX 354057 . T C 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=126;Dels=0.00;FS=7.406;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-1.220;QD=17.38;ReadPosRankSum=2.411;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2223,236,0 chrX 354070 . G T 2073 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=18.03;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2106,237,0 chrX 354099 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=15.73;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1905,210,0 chrX 354103 . C A 1953 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=15.50;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1986,222,0 chrX 354137 . A T 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;MQRankSum=-1.024;QD=17.89;ReadPosRankSum=1.706;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2394,261,0 chrX 354138 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=18.02;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2393,264,0 chrX 354152 . C A 2510 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4008;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=17.31;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2543,279,0 chrX 354200 . T A 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=127;Dels=0.00;FS=3.479;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.041;QD=17.94;ReadPosRankSum=1.541;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2311,255,0 chrX 354215 . A C 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.598;QD=19.13;ReadPosRankSum=1.701;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2195,249,0 chrX 354287 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=5.7123;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=22.37;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1890,204,0 chrX 354372 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=9.8530;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=20.51;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1612,180,0 chrX 354446 . G A 943 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:976,108,0 chrX 354475 . T C 633 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:81:666,81,0 chrX 354576 . G T 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.384;DP=32;Dels=0.00;FS=38.490;HaplotypeScore=13.6366;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=1;MQRankSum=0.340;QD=7.47;ReadPosRankSum=-1.221;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,13:32:99:269,0,175 chrX 354579 . G A 185.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;DP=32;Dels=0.00;FS=38.490;HaplotypeScore=13.6366;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=1;MQRankSum=0.580;QD=5.78;ReadPosRankSum=-1.861;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,14:32:99:215,0,183 chrX 354580 . A G 99.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;DP=32;Dels=0.00;FS=31.971;HaplotypeScore=13.6366;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=1;MQRankSum=0.692;QD=3.09;ReadPosRankSum=0.889;SB=-8.589e+01 GT:AD:DP:GQ:PL 0/1:16,16:32:99:129,0,268 chrX 354588 . T A 165.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;DP=29;Dels=0.00;FS=30.538;HaplotypeScore=7.9396;MLEAC=1;MLEAF=0.500;MQ=29.06;MQ0=1;MQRankSum=-0.072;QD=5.69;ReadPosRankSum=-3.812;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,10:29:99:195,0,181 chrX 354603 . A G 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;DP=23;Dels=0.00;FS=15.420;HaplotypeScore=5.9525;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=1;MQRankSum=0.298;QD=1.26;ReadPosRankSum=-3.107;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,4:23:59:59,0,198 chrX 354655 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=5.95;SB=-2.880e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrX 354758 . T A 639 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.175;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=9;MQRankSum=1.761;QD=14.20;ReadPosRankSum=0.656;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:4,41:45:56:672,56,0 chrX 354785 . C T 812 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=8;QD=18.88;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:96:845,96,0 chrX 354967 . C T 50.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=17.80;MQ0=5;QD=2.68;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:3,16:19:9:83,9,0 chrX 354975 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.36;MQ0=4;QD=2.65;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:4,13:17:9:77,9,0 chrX 355002 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.82;MQ0=17;QD=1.96;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:14,9:24:9:79,9,0 chrX 355087 . C A 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;DP=39;Dels=0.00;FS=8.451;HaplotypeScore=8.5007;MLEAC=1;MLEAF=0.500;MQ=11.82;MQ0=25;MQRankSum=0.639;QD=0.60;ReadPosRankSum=-0.091;SB=-3.224e+00 GT:AD:DP:GQ:PL 0/1:26,13:39:10:53,0,10 chrX 355089 . T C 42.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;DP=38;Dels=0.00;FS=8.451;HaplotypeScore=8.5007;MLEAC=1;MLEAF=0.500;MQ=11.97;MQ0=24;MQRankSum=0.456;QD=1.12;ReadPosRankSum=-0.091;SB=-3.428e+00 GT:AD:DP:GQ:PL 0/1:26,12:38:7:72,0,7 chrX 355092 . G A 42.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;DP=39;Dels=0.00;FS=15.441;HaplotypeScore=13.0127;MLEAC=1;MLEAF=0.500;MQ=12.06;MQ0=24;MQRankSum=1.516;QD=1.09;ReadPosRankSum=0.794;SB=-3.428e+00 GT:AD:DP:GQ:PL 0/1:25,12:39:7:72,0,7 chrX 355093 . C T 42.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;DP=39;Dels=0.00;FS=15.441;HaplotypeScore=2.8627;MLEAC=1;MLEAF=0.500;MQ=12.06;MQ0=24;MQRankSum=1.371;QD=1.09;ReadPosRankSum=0.794;SB=-3.428e+00 GT:AD:DP:GQ:PL 0/1:26,12:39:7:72,0,7 chrX 355100 . T A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DP=48;Dels=0.00;FS=34.820;HaplotypeScore=3.9049;MLEAC=1;MLEAF=0.500;MQ=18.14;MQ0=17;MQRankSum=-0.971;QD=0.75;ReadPosRankSum=1.919;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,23:48:55:66,0,55 chrX 355110 . G A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;DP=50;Dels=0.02;FS=60.856;HaplotypeScore=3.7133;MLEAC=1;MLEAF=0.500;MQ=20.18;MQ0=12;MQRankSum=-0.016;QD=0.94;ReadPosRankSum=3.675;SB=-3.010e+00 GT:AD:DP:GQ:PL 0/1:24,25:49:77:77,0,147 chrX 355125 . C T 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;DP=45;Dels=0.00;FS=65.193;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=21.27;MQ0=7;MQRankSum=-0.409;QD=1.00;ReadPosRankSum=4.312;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:21,24:45:75:75,0,173 chrX 355127 . A G 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DP=42;Dels=0.00;FS=65.193;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=22.02;MQ0=4;MQRankSum=-0.136;QD=1.07;ReadPosRankSum=4.161;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:18,24:42:75:75,0,174 chrX 355129 . C T 287 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=2;MQRankSum=1.641;QD=7.17;ReadPosRankSum=1.641;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,38:40:39:320,39,0 chrX 355137 . A C 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166;DP=38;Dels=0.00;FS=70.399;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=1;MQRankSum=-0.684;QD=1.16;ReadPosRankSum=-0.366;SB=-2.962e+00 GT:AD:DP:GQ:PL 0/1:14,24:38:74:74,0,174 chrX 355146 . A G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=38;Dels=0.00;FS=70.399;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=1;MQRankSum=-0.366;QD=1.16;ReadPosRankSum=-4.979;SB=-2.974e+00 GT:AD:DP:GQ:PL 0/1:14,24:38:74:74,0,170 chrX 355147 . G A 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.452;DP=38;Dels=0.00;FS=70.399;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=1;MQRankSum=-0.175;QD=1.18;ReadPosRankSum=-4.979;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:14,24:38:75:75,0,174 chrX 355152 . T C 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;DP=38;Dels=0.00;FS=70.399;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=1;MQRankSum=-0.939;QD=1.13;ReadPosRankSum=-4.979;SB=-2.962e+00 GT:AD:DP:GQ:PL 0/1:14,24:38:73:73,0,172 chrX 355187 . T G 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778;DP=60;Dels=0.00;FS=50.614;HaplotypeScore=10.3314;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=1;MQRankSum=0.616;QD=1.12;ReadPosRankSum=0.556;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,10:60:97:97,0,286 chrX 355206 . G A 598 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=9.97;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:72:631,72,0 chrX 355278 . A T 1991 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=22.89;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2024,222,0 chrX 355339 . G C 1940 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=16.87;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1973,242,0 chrX 355344 . C T 1928 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=0;QD=16.91;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1961,236,0 chrX 355347 . T C 1854 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;MQRankSum=-1.732;QD=16.41;ReadPosRankSum=1.640;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1887,233,0 chrX 355353 . C A 1862 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;QD=15.91;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1895,230,0 chrX 355538 . A T 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=-0.760;QD=18.05;ReadPosRankSum=1.702;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2091,246,0 chrX 355540 . G C 2032 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=18.31;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2065,237,0 chrX 355564 . T G 2033 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=16.80;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2066,240,0 chrX 355601 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=111.4816;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=18.59;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2413,267,0 chrX 355630 . T A 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=3.044;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=0.086;QD=20.27;ReadPosRankSum=2.411;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2627,291,0 chrX 355696 . A G 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=123;Dels=0.00;FS=6.201;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=1.059;QD=20.73;ReadPosRankSum=2.409;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2583,294,0 chrX 355877 . T C 2223 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.79;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2256,255,0 chrX 355891 . C G 2087 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.63;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2120,243,0 chrX 355949 . T C 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=111;Dels=0.00;FS=7.074;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=1.107;QD=18.48;ReadPosRankSum=2.405;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2084,237,0 chrX 355957 . A G 2069 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=17.99;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2102,237,0 chrX 356129 . C T 5238.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.80;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:5238,567,0 chrX 356308 . G A 6931.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.58;SB=-3.744e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:6931,780,0 chrX 356605 . G A 4803.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.01;FS=0.000;HaplotypeScore=15.0955;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.03;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4803,543,0 chrX 356743 . G C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.55;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3580,405,0 chrX 356833 . T C 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=217;Dels=0.00;FS=7.989;HaplotypeScore=15.2244;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.074;QD=21.66;ReadPosRankSum=2.392;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4701,534,0 chrX 357097 . T G 4807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.024;QD=22.57;ReadPosRankSum=1.651;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4807,564,0 chrX 357157 . C G 5511.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.78;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5511,647,0 chrX 357273 . A C 7182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=311;Dels=0.00;FS=9.264;HaplotypeScore=25.0168;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.739;QD=23.09;ReadPosRankSum=2.426;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:3,305:311:99:7182,828,0 chrX 357352 . A G 6647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=313;Dels=0.00;FS=3.023;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.533;QD=21.24;ReadPosRankSum=2.418;SB=-3.619e+03 GT:AD:DP:GQ:PL 1/1:2,310:313:99:6647,782,0 chrX 357628 . T C 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=201;Dels=0.00;FS=3.021;HaplotypeScore=12.7166;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.755;QD=22.21;ReadPosRankSum=2.376;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4464,513,0 chrX 357980 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.92;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1205,138,0 chrX 358552 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4563;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.89;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3489,402,0 chrX 358569 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.08;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3500,381,0 chrX 358755 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.9386;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.01;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3181,354,0 chrX 359101 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3433,366,0 chrX 359301 . T G 5410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.4601;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.122;QD=23.12;ReadPosRankSum=1.717;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5410,615,0 chrX 359445 . C T 4905.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.8093;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.71;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4905,537,0 chrX 359702 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.31;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2815,315,0 chrX 359859 . G T 998 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=10.40;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1031,123,0 chrX 359875 . A G 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.0373;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.268;QD=12.18;ReadPosRankSum=2.105;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:3,84:88:99:1105,129,0 chrX 360186 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.652;QD=24.21;ReadPosRankSum=1.692;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4164,477,0 chrX 360306 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=186;Dels=0.00;FS=6.627;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.010;QD=21.01;ReadPosRankSum=2.384;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3908,453,0 chrX 360316 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.76;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4135,465,0 chrX 360588 . G A 7857.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=31.5131;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.03;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,325:327:99:7857,856,0 chrX 360746 . T C 5188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=304;Dels=0.00;FS=6.021;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.658;QD=17.07;ReadPosRankSum=1.721;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,299:304:99:5188,591,0 chrX 360767 . C G 5098.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=17.40;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,290:293:99:5098,582,0 chrX 360976 . C A 4510.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.79;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4510,498,0 chrX 361124 . A G 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=221;Dels=0.00;FS=3.404;HaplotypeScore=19.7558;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.989;QD=21.79;ReadPosRankSum=1.700;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:4815,561,0 chrX 361221 . A G 7409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=332;Dels=0.00;FS=3.022;HaplotypeScore=20.7389;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.263;QD=22.32;ReadPosRankSum=2.435;SB=-4.148e+03 GT:AD:DP:GQ:PL 1/1:2,329:332:99:7409,837,0 chrX 361340 . G C 5589.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.75;SB=-3.325e+03 GT:AD:DP:GQ:PL 1/1:0,253:257:99:5589,627,0 chrX 361485 . T C 7566.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=372;Dels=0.00;FS=2.567;HaplotypeScore=24.7718;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=2.132;QD=20.34;ReadPosRankSum=2.932;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:3,368:372:99:7566,867,0 chrX 362386 . T C 5232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.659;DP=264;Dels=0.00;FS=9.909;HaplotypeScore=24.4064;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.153;QD=19.82;ReadPosRankSum=2.943;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:3,259:264:99:5232,597,0 chrX 362496 . C T 6215.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.81;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6215,690,0 chrX 362538 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.8367;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.05;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:4811,522,0 chrX 362546 . A G 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=231;Dels=0.00;FS=6.955;HaplotypeScore=7.6363;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.058;QD=19.33;ReadPosRankSum=2.311;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4466,510,0 chrX 362886 . T C 5707.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=19.3763;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.37;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5707,654,0 chrX 363087 . G A 5469.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=16.5869;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.48;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5469,627,0 chrX 363678 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.216;QD=21.89;ReadPosRankSum=1.689;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3546,417,0 chrX 363726 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=16.2475;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.16;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3435,378,0 chrX 364028 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.124;QD=22.49;ReadPosRankSum=1.706;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:3024,351,0 chrX 364186 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.13;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3539,396,0 chrX 364397 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.99;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4606,507,0 chrX 364524 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.86;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3230,360,0 chrX 364569 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3645,426,0 chrX 364721 . G A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.90;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4230,474,0 chrX 364761 . T C 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.410;DP=176;Dels=0.00;FS=5.250;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.534;QD=22.27;ReadPosRankSum=3.320;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:3919,447,0 chrX 364938 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=183;Dels=0.00;FS=8.092;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.100;QD=21.81;ReadPosRankSum=2.396;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3991,450,0 chrX 365022 . G A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.3981;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.26;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4512,513,0 chrX 366471 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.9444;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.12;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2574,297,0 chrX 366482 . A C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=167;Dels=0.00;FS=14.129;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.207;QD=13.79;ReadPosRankSum=3.290;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:4,161:167:99:2336,267,0 chrX 366671 . C A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=22.56;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3520,390,0 chrX 366673 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=156;Dels=0.00;FS=2.907;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-1.419;QD=21.62;ReadPosRankSum=2.370;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3372,384,0 chrX 366948 . G A 1525 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=9;QD=10.89;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:1558,174,0 chrX 366966 . C T 1560 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.9686;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=10;MQRankSum=0.129;QD=10.83;ReadPosRankSum=1.241;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:1593,177,0 chrX 367200 . G A 2932 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.236;DP=185;Dels=0.00;FS=38.699;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=8;MQRankSum=5.019;QD=15.85;ReadPosRankSum=-3.196;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:24,161:185:99:2965,118,0 chrX 367212 . C T 2766 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.012;DP=195;Dels=0.00;FS=20.112;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=5;MQRankSum=6.108;QD=14.18;ReadPosRankSum=-2.939;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:27,167:195:93:2799,93,0 chrX 367284 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.227;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=20.1310;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=1;MQRankSum=-0.564;QD=19.04;ReadPosRankSum=-2.112;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4056,431,0 chrX 367399 . A G 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.438;DP=185;Dels=0.00;FS=12.574;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=3.260;QD=20.57;ReadPosRankSum=1.723;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:4,180:185:99:3805,426,0 chrX 367594 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4298,471,0 chrX 367642 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=191;Dels=0.00;FS=2.919;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.842;QD=20.93;ReadPosRankSum=2.372;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3997,462,0 chrX 368244 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1598,183,0 chrX 368828 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.52;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3118,339,0 chrX 368840 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.7880;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.211;QD=20.49;ReadPosRankSum=1.680;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2778,321,0 chrX 369255 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.01;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2344,267,0 chrX 369324 . C T 2203 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.69;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2236,255,0 chrX 369900 . T C 2978 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.8682;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3011,339,0 chrX 369999 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.09;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4152,480,0 chrX 370140 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.12;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3569,399,0 chrX 370407 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=181;Dels=0.00;FS=3.208;HaplotypeScore=13.3072;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.982;QD=22.59;ReadPosRankSum=1.713;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4089,468,0 chrX 371132 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3150,354,0 chrX 371294 . T C 2263 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.19;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2296,258,0 chrX 371772 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.26;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2410,264,0 chrX 372633 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=12.5964;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.884;QD=16.73;ReadPosRankSum=1.709;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2543,291,0 chrX 373143 . A G 1188 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1221,144,0 chrX 373437 . G T 2518 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2551,288,0 chrX 373775 . G C 3039 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.25;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3072,360,0 chrX 374244 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=25.43;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2830,306,0 chrX 374343 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=23.72;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2500,276,0 chrX 374408 . G T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=132.9226;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.84;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3471,390,0 chrX 375038 . T G 2887 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.68;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2920,330,0 chrX 375069 . G C 2633 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.90;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2666,309,0 chrX 375100 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.17;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1969,216,0 chrX 375115 . T C 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2035;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.578;QD=19.02;ReadPosRankSum=1.655;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1745,198,0 chrX 375163 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.4310;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.03;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2809,318,0 chrX 375392 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.75;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3168,348,0 chrX 375932 . T A 810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.038;DP=42;Dels=0.00;FS=2.638;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.443;QD=19.29;ReadPosRankSum=2.333;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:2,40:42:93:843,93,0 chrX 375980 . C A 1141 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=13.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=0.279;QD=18.40;ReadPosRankSum=1.565;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1174,129,0 chrX 375981 . T C 1099 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=17.73;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1132,129,0 chrX 375984 . T C 1153 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=-0.797;QD=17.74;ReadPosRankSum=2.892;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:3,62:65:99:1186,135,0 chrX 376009 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.53;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1488,168,0 chrX 376051 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.16;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1404,153,0 chrX 376071 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.25;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1457,162,0 chrX 376315 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.14;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1472,162,0 chrX 376379 . A G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=85;Dels=0.00;FS=2.656;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.073;QD=21.38;ReadPosRankSum=2.391;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1850,210,0 chrX 377543 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.79;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2031,228,0 chrX 377632 . T A 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=0.493;QD=22.01;ReadPosRankSum=1.700;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2432,264,0 chrX 377711 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=18.83;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1803,198,0 chrX 377730 . T C 1422 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=18.47;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:77:99:1455,165,0 chrX 377783 . G T 947 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=18.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:980,111,0 chrX 377789 . A G 1122 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=20.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1155,129,0 chrX 377800 . A T 1154 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=-1.444;QD=19.23;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1187,132,0 chrX 378111 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=21.35;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2232,246,0 chrX 378131 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=18.04;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1765,201,0 chrX 378171 . A G 1510 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=16.06;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1543,174,0 chrX 378185 . T G 1291 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=14.03;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1324,150,0 chrX 378189 . G C 1340 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=14.41;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1373,162,0 chrX 378204 . T G 1425 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=14.84;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1458,165,0 chrX 378208 . A G 1401 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=-1.583;QD=14.90;ReadPosRankSum=1.695;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1434,162,0 chrX 378211 . A T 1278 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=14.36;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1311,150,0 chrX 378217 . T A 1286 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=4.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;MQRankSum=-1.732;QD=14.78;ReadPosRankSum=1.692;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1319,141,0 chrX 378226 . T A 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=7.616;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;MQRankSum=-2.359;QD=13.32;ReadPosRankSum=2.328;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1112,126,0 chrX 378252 . T A 1215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=93;Dels=0.04;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;MQRankSum=-0.837;QD=13.06;ReadPosRankSum=1.693;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1248,141,0 chrX 378266 . T A 1528 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=15.75;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1561,177,0 chrX 378337 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=76.7574;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=19.53;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1752,192,0 chrX 378557 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=156;Dels=0.00;FS=2.543;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.474;QD=21.99;ReadPosRankSum=2.955;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3430,390,0 chrX 378608 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.03;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4100,453,0 chrX 378706 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.62;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3783,441,0 chrX 378869 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.15;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3659,411,0 chrX 378873 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.19;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3412,375,0 chrX 379232 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.34;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4065,459,0 chrX 379268 . T C 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=176;Dels=0.01;FS=2.871;HaplotypeScore=11.2119;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.970;QD=23.53;ReadPosRankSum=2.365;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:4141,471,0 chrX 379586 . T C 4121.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4121,474,0 chrX 379742 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=158;Dels=0.00;FS=2.583;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.686;QD=22.63;ReadPosRankSum=2.917;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3576,414,0 chrX 379811 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.962;QD=24.26;ReadPosRankSum=1.684;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3518,399,0 chrX 380369 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.21;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3209,348,0 chrX 380706 . T C 9044.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=424;Dels=0.00;FS=9.186;HaplotypeScore=22.2280;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.057;QD=21.33;ReadPosRankSum=2.979;SB=-5.231e+03 GT:AD:DP:GQ:PL 1/1:3,421:424:99:9044,1035,0 chrX 380992 . T C 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=274;Dels=0.00;FS=5.425;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-1.070;QD=20.07;ReadPosRankSum=1.707;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,271:274:99:5499,627,0 chrX 381023 . A G 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.117;QD=17.77;ReadPosRankSum=1.719;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:4620,540,0 chrX 381025 . C T 4661.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=17.86;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:4661,534,0 chrX 381093 . T C 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=193;Dels=0.00;FS=5.056;HaplotypeScore=13.5909;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.742;QD=17.43;ReadPosRankSum=1.714;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:3364,381,0 chrX 381120 . T G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=168;Dels=0.00;FS=8.185;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.096;QD=19.74;ReadPosRankSum=2.420;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3316,378,0 chrX 381644 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=3.557;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.000;QD=21.06;ReadPosRankSum=1.658;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3939,459,0 chrX 381650 . T C 3966.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.87;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3966,447,0 chrX 381896 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.112;DP=186;Dels=0.00;FS=5.025;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.164;QD=22.49;ReadPosRankSum=3.413;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:4,182:186:99:4183,480,0 chrX 382565 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.478;QD=20.28;ReadPosRankSum=1.711;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3305,378,0 chrX 382988 . C G 5535.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.5252;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.45;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,250:258:99:5535,648,0 chrX 383067 . T G 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=198;Dels=0.00;FS=4.230;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.555;QD=22.15;ReadPosRankSum=1.714;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4386,501,0 chrX 383417 . T C 1432 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.60;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1465,177,0 chrX 384052 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=180;Dels=0.00;FS=2.802;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.525;QD=19.10;ReadPosRankSum=2.368;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3438,384,0 chrX 384310 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3867,441,0 chrX 384481 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.65;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3465,396,0 chrX 384523 . A C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.093;QD=21.99;ReadPosRankSum=1.679;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2958,333,0 chrX 385172 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3597,399,0 chrX 385408 . A G 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.732;QD=23.05;ReadPosRankSum=1.699;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4794,540,0 chrX 385510 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=178;Dels=0.00;FS=5.465;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.059;QD=23.25;ReadPosRankSum=1.693;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4139,489,0 chrX 385772 . T C 4242.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.31;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4242,483,0 chrX 385990 . G T 2878 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.71;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2911,324,0 chrX 385991 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.59;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2915,324,0 chrX 386167 . A G 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.346;QD=20.15;ReadPosRankSum=1.691;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1746,201,0 chrX 386286 . A C 727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.173;QD=18.17;ReadPosRankSum=1.646;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:87:760,87,0 chrX 386296 . A T 542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.809;QD=18.07;ReadPosRankSum=1.617;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:63:575,63,0 chrX 386413 . C G 1156 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.60;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1189,135,0 chrX 386494 . G T 1279 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.08;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1312,147,0 chrX 386527 . T G 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.086;QD=24.63;ReadPosRankSum=1.674;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1486,171,0 chrX 387413 . A G 2382 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2415,276,0 chrX 387637 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2881,315,0 chrX 387695 . A G 3026 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3059,357,0 chrX 387767 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.15;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3719,414,0 chrX 387794 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.83;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3646,402,0 chrX 387923 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.73;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4509,507,0 chrX 388010 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.86;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4057,453,0 chrX 388199 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.3723;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=18.93;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2343,261,0 chrX 388253 . T C 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=87;Dels=0.00;FS=3.496;HaplotypeScore=14.4420;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.306;QD=13.93;ReadPosRankSum=1.691;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1245,141,0 chrX 388275 . A T 685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.063;DP=101;Dels=0.00;FS=9.776;HaplotypeScore=9.7264;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.515;QD=6.78;ReadPosRankSum=0.497;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:8,93:101:65:718,65,0 chrX 388388 . A G 2232 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2265,252,0 chrX 388820 . A C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6308;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-0.854;QD=19.56;ReadPosRankSum=1.709;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2986,348,0 chrX 388825 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2775;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=19.88;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2935,330,0 chrX 388835 . A G 2602 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=17.94;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2635,297,0 chrX 388844 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.48;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2823,324,0 chrX 389073 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.03;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2912,318,0 chrX 389413 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.77;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3575,393,0 chrX 389929 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2084,228,0 chrX 389963 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1968,222,0 chrX 390467 . T G 2857 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.50;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2890,324,0 chrX 390521 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.36;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2739,300,0 chrX 390617 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.77;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2484,276,0 chrX 390902 . G C 2572 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.41;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2605,291,0 chrX 390905 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.38;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2662,303,0 chrX 390932 . C G 2820 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.43;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2853,324,0 chrX 391129 . C G 2731 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.76;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2764,318,0 chrX 391162 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.97;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3005,330,0 chrX 391247 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.496;DP=122;Dels=0.00;FS=5.956;HaplotypeScore=92.0620;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;MQRankSum=-1.174;QD=20.00;ReadPosRankSum=2.893;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2473,279,0 chrX 391269 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=17.23;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2411,282,0 chrX 391555 . G A 5575.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=8.8678;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.61;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5575,615,0 chrX 391657 . T C 5142.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=9.7954;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=19.33;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,263:266:99:5142,588,0 chrX 391693 . T C 6062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=333;Dels=0.00;FS=7.743;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-1.493;QD=18.20;ReadPosRankSum=1.680;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,332:333:99:6062,687,0 chrX 392058 . T C 5634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=291;Dels=0.00;FS=4.439;HaplotypeScore=13.2941;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.073;QD=19.36;ReadPosRankSum=1.720;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,288:291:99:5634,648,0 chrX 392321 . C T 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=164;Dels=0.00;FS=3.230;HaplotypeScore=8.9164;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.625;QD=18.10;ReadPosRankSum=0.642;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3001,333,0 chrX 392346 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.76;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3883,438,0 chrX 392871 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3036,336,0 chrX 393423 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.80;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3117,366,0 chrX 393501 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1870,216,0 chrX 393564 . G C 1521 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.33;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1554,174,0 chrX 393690 . T C 170.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.00;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:203,24,0 chrX 393764 . T C 101.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.47;SB=-2.714e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:134,15,0 chrX 393918 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.624;QD=23.56;ReadPosRankSum=1.704;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2978,333,0 chrX 394217 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.528;DP=212;Dels=0.00;FS=7.446;HaplotypeScore=13.5703;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.105;QD=20.77;ReadPosRankSum=3.474;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:6,206:212:99:4403,484,0 chrX 394408 . C A 4448.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.79;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4448,489,0 chrX 394692 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.17;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3680,402,0 chrX 394713 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.02;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3236,366,0 chrX 394810 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.1245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3372,372,0 chrX 395209 . A G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=3.332;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.767;QD=20.73;ReadPosRankSum=1.683;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2956,345,0 chrX 395307 . T C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.038;QD=23.08;ReadPosRankSum=1.681;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3172,357,0 chrX 395395 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.81;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3262,363,0 chrX 395409 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.20;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3433,375,0 chrX 395805 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.3804;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1917,207,0 chrX 395874 . G T 2479 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2512,276,0 chrX 396063 . A T 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.424;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.585;QD=22.71;ReadPosRankSum=1.642;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3498,387,0 chrX 396269 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.88;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3629,399,0 chrX 396515 . A C 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=128;Dels=0.00;FS=5.390;HaplotypeScore=9.7289;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;MQRankSum=-0.310;QD=22.66;ReadPosRankSum=2.881;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2933,330,0 chrX 396551 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=110.6150;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.44;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2567,282,0 chrX 396638 . A G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.732;QD=20.49;ReadPosRankSum=1.707;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2840,324,0 chrX 396640 . A G 2706 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.04;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2739,312,0 chrX 396723 . A G 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.779;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=1.369;QD=20.67;ReadPosRankSum=2.211;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2017,188,0 chrX 396848 . T G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=3.802;HaplotypeScore=6.2451;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.283;QD=23.36;ReadPosRankSum=1.700;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2556,285,0 chrX 396982 . T C 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=107;Dels=0.00;FS=2.865;HaplotypeScore=13.7861;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.498;QD=19.24;ReadPosRankSum=2.403;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2092,243,0 chrX 397072 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.6644;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2331,270,0 chrX 397262 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.6261;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.75;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2626,294,0 chrX 397295 . T C 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=128;Dels=0.00;FS=2.802;HaplotypeScore=10.9139;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.747;QD=21.15;ReadPosRankSum=2.391;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2740,312,0 chrX 397474 . T C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=148;Dels=0.00;FS=6.110;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.062;QD=20.32;ReadPosRankSum=2.925;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3041,357,0 chrX 397497 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.45;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3480,378,0 chrX 397607 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.7529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.33;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4012,447,0 chrX 398093 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.20;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3188,360,0 chrX 398145 . A T 2938 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.8406;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.76;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2971,336,0 chrX 398191 . T C 3014 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.36;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3047,348,0 chrX 398286 . T C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=3.047;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.568;QD=19.67;ReadPosRankSum=1.645;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2374,273,0 chrX 398357 . G T 2557 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.96;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2590,282,0 chrX 398569 . T A 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.5119;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.425;QD=21.90;ReadPosRankSum=1.704;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2748,315,0 chrX 398746 . A G 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=116;Dels=0.00;FS=5.822;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.374;QD=20.39;ReadPosRankSum=2.818;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2398,270,0 chrX 398997 . A G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=3.371;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.475;QD=22.89;ReadPosRankSum=1.640;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2643,297,0 chrX 399390 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.0738;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.90;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3503,390,0 chrX 400231 . A G 731.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.307;DP=372;Dels=0.00;FS=63.313;HaplotypeScore=868.3169;MLEAC=1;MLEAF=0.500;MQ=29.78;MQ0=0;MQRankSum=-0.388;QD=1.97;ReadPosRankSum=0.607;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:319,53:372:99:761,0,1001 chrX 400232 . C T 677.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.097;DP=372;Dels=0.00;FS=3.594;HaplotypeScore=766.6583;MLEAC=1;MLEAF=0.500;MQ=29.88;MQ0=0;MQRankSum=0.280;QD=1.82;ReadPosRankSum=5.538;SB=-1.623e+03 GT:AD:DP:GQ:PL 0/1:150,222:372:99:707,0,1120 chrX 400234 . G A 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.203;DP=388;Dels=0.00;FS=2.610;HaplotypeScore=643.9619;MLEAC=1;MLEAF=0.500;MQ=29.96;MQ0=0;MQRankSum=0.057;QD=0.07;ReadPosRankSum=-0.090;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:332,56:388:56:56,0,1643 chrX 400235 . A G 331.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;DP=389;Dels=0.00;FS=83.476;HaplotypeScore=532.4410;MLEAC=1;MLEAF=0.500;MQ=29.96;MQ0=0;MQRankSum=-0.088;QD=0.85;ReadPosRankSum=0.796;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:347,42:389:99:361,0,1889 chrX 400242 . A T 2116.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;DP=416;Dels=0.00;FS=23.008;HaplotypeScore=242.1286;MLEAC=1;MLEAF=0.500;MQ=30.06;MQ0=0;MQRankSum=0.077;QD=5.09;ReadPosRankSum=2.359;SB=-1.982e+03 GT:AD:DP:GQ:PL 0/1:135,281:416:99:2146,0,394 chrX 400246 . A G 421.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;DP=428;Dels=0.00;FS=22.282;HaplotypeScore=250.1041;MLEAC=1;MLEAF=0.500;MQ=30.03;MQ0=0;MQRankSum=-1.445;QD=0.98;ReadPosRankSum=-0.402;SB=-1.053e+03 GT:AD:DP:GQ:PL 0/1:291,136:428:99:451,0,1904 chrX 400249 . G A 261.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.638;DP=451;Dels=0.00;FS=6.663;HaplotypeScore=262.7577;MLEAC=1;MLEAF=0.500;MQ=30.08;MQ0=0;MQRankSum=-0.495;QD=0.58;ReadPosRankSum=2.709;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:368,83:451:99:291,0,2317 chrX 400254 . A T 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;DP=474;Dels=0.00;FS=19.317;HaplotypeScore=259.4804;MLEAC=1;MLEAF=0.500;MQ=30.10;MQ0=0;MQRankSum=-1.683;QD=0.10;ReadPosRankSum=-0.273;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:396,78:474:79:79,0,2903 chrX 400260 . T A 388.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;DP=475;Dels=0.00;FS=25.427;HaplotypeScore=221.7589;MLEAC=1;MLEAF=0.500;MQ=30.20;MQ0=0;MQRankSum=-2.108;QD=0.82;ReadPosRankSum=5.234;SB=-1.057e+03 GT:AD:DP:GQ:PL 0/1:323,152:475:99:418,0,2615 chrX 400262 . G A 399.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.603;DP=468;Dels=0.00;FS=21.408;HaplotypeScore=332.9194;MLEAC=1;MLEAF=0.500;MQ=30.21;MQ0=0;MQRankSum=-1.297;QD=0.85;ReadPosRankSum=5.269;SB=-1.138e+03 GT:AD:DP:GQ:PL 0/1:315,153:468:99:429,0,2421 chrX 400263 . A G 398.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.825;DP=468;Dels=0.00;FS=21.408;HaplotypeScore=332.9194;MLEAC=1;MLEAF=0.500;MQ=30.21;MQ0=0;MQRankSum=-1.239;QD=0.85;ReadPosRankSum=5.706;SB=-1.156e+03 GT:AD:DP:GQ:PL 0/1:315,153:468:99:428,0,2477 chrX 400271 . G A 216.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.070;DP=472;Dels=0.00;FS=59.899;HaplotypeScore=190.8110;MLEAC=1;MLEAF=0.500;MQ=30.20;MQ0=0;MQRankSum=-0.925;QD=0.46;ReadPosRankSum=-0.775;SB=-3.490e+02 GT:AD:DP:GQ:PL 0/1:341,130:472:99:246,0,2425 chrX 400288 . G A 1924.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;DP=444;Dels=0.00;FS=43.953;HaplotypeScore=10.3624;MLEAC=1;MLEAF=0.500;MQ=30.18;MQ0=0;MQRankSum=2.121;QD=4.33;ReadPosRankSum=-0.500;SB=-1.879e+03 GT:AD:DP:GQ:PL 0/1:205,239:444:99:1954,0,631 chrX 400335 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9915;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;QD=12.51;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1910,204,0 chrX 400622 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.66;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3512,393,0 chrX 400631 . T G 3196 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.73;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3229,375,0 chrX 400808 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=201;Dels=0.00;FS=3.004;HaplotypeScore=11.5668;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.706;QD=21.70;ReadPosRankSum=2.425;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4362,498,0 chrX 401166 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.0540;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.89;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4327,477,0 chrX 401242 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.3932;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.96;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4631,525,0 chrX 401648 . A G 3181 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.79;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3214,360,0 chrX 402145 . A T 2683 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2716,300,0 chrX 402267 . C A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.1048;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.43;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4221,471,0 chrX 402396 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.30;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3457,387,0 chrX 402484 . C A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.02;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3531,384,0 chrX 402557 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.6968;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.57;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3012,333,0 chrX 402577 . T C 2461 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.17;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2494,288,0 chrX 402683 . T G 2740 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2773,318,0 chrX 402983 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=3.010;HaplotypeScore=14.2313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.437;QD=21.79;ReadPosRankSum=1.715;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4314,501,0 chrX 403036 . C T 4937.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.4585;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.29;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4937,540,0 chrX 404816 . T C 2458 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.35;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2491,282,0 chrX 404952 . A T 2832 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.98;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2865,309,0 chrX 404987 . G T 2011 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=5.6346;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=14.16;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2044,228,0 chrX 404990 . A C 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=4.089;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-0.111;QD=12.97;ReadPosRankSum=1.708;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:1887,216,0 chrX 405244 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1286;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=1.433;QD=20.72;ReadPosRankSum=1.493;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2437,279,0 chrX 405306 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.7935;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.82;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1764,195,0 chrX 405553 . A G 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=7.871;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.050;QD=22.83;ReadPosRankSum=2.390;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2864,327,0 chrX 405572 . G C 2746 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.79;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2779,318,0 chrX 405778 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.203;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.355;QD=23.08;ReadPosRankSum=1.689;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3739,423,0 chrX 405884 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2669,306,0 chrX 405983 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.37;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2864,324,0 chrX 405992 . C G 2919 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.41;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2952,336,0 chrX 406334 . C T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=20.3416;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.91;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4215,465,0 chrX 407535 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.0791;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.79;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3898,426,0 chrX 411303 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2190,246,0 chrX 411519 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=170;Dels=0.00;FS=2.949;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.730;QD=21.07;ReadPosRankSum=2.291;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3582,414,0 chrX 411632 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.3311;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.69;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3951,456,0 chrX 412419 . C T 4903.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.7892;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.69;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4903,540,0 chrX 412734 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=192;Dels=0.00;FS=2.990;HaplotypeScore=9.5687;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.534;QD=22.73;ReadPosRankSum=2.424;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4365,489,0 chrX 412914 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.3187;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.82;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3665,417,0 chrX 413049 . T G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1386;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.44;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3666,417,0 chrX 414104 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1683,189,0 chrX 414830 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2981,342,0 chrX 415079 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=19.7284;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.10;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2817,321,0 chrX 415231 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=140;Dels=0.00;FS=9.705;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=2.274;QD=21.76;ReadPosRankSum=2.864;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3079,354,0 chrX 415348 . G A 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3311;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.586;QD=22.33;ReadPosRankSum=-0.153;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3070,342,0 chrX 415355 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=142;Dels=0.00;FS=3.231;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.437;QD=20.46;ReadPosRankSum=1.708;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2939,333,0 chrX 415440 . G T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.1745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.57;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4447,489,0 chrX 415501 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3475,381,0 chrX 415736 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.67;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3977,441,0 chrX 415991 . C T 1916 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=9;QD=20.17;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:8,87:95:99:1949,225,0 chrX 416075 . G T 1256 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=20.26;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1289,141,0 chrX 416411 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.84;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3334,375,0 chrX 416446 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=180;Dels=0.01;FS=12.494;HaplotypeScore=10.8765;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.745;QD=20.50;ReadPosRankSum=3.400;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3690,429,0 chrX 416768 . A T 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.691;QD=23.05;ReadPosRankSum=1.608;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1969,216,0 chrX 416952 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.99;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2240,258,0 chrX 417033 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1856,207,0 chrX 417132 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0141;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.184;QD=23.51;ReadPosRankSum=1.706;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3136,363,0 chrX 417327 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.71;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1878,204,0 chrX 417350 . C A 1760 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.28;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1793,198,0 chrX 417351 . A C 1716 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.72;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1749,198,0 chrX 417411 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.83;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1441,162,0 chrX 417428 . A T 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.325;QD=20.89;ReadPosRankSum=1.624;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1370,147,0 chrX 417470 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.26;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1564,171,0 chrX 417590 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.90;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1726,189,0 chrX 417877 . T C 4411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=180;Dels=0.00;FS=2.572;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.644;QD=24.51;ReadPosRankSum=2.395;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4411,495,0 chrX 418708 . T C 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=6.642;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.449;QD=21.16;ReadPosRankSum=2.391;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3533,396,0 chrX 419227 . T A 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=3.109;HaplotypeScore=11.0372;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=0.487;QD=23.43;ReadPosRankSum=1.693;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4194,465,0 chrX 419397 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.08;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3532,390,0 chrX 419759 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.97;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2214,246,0 chrX 419761 . G C 2074 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.52;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2107,243,0 chrX 419940 . A T 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=4.497;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.602;QD=24.24;ReadPosRankSum=1.607;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3345,369,0 chrX 420014 . C T 4502.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8299;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.69;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4502,501,0 chrX 420914 . G A 4498.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1231;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.94;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4498,510,0 chrX 421427 . A G 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.9011;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.636;QD=19.91;ReadPosRankSum=1.619;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4281,480,0 chrX 421930 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.4913;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.03;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2981,324,0 chrX 421977 . C A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.27;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3274,372,0 chrX 421994 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.27;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3421,390,0 chrX 422049 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.04;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2876,324,0 chrX 422162 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.75;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3468,381,0 chrX 422207 . G C 2369 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.15;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2402,273,0 chrX 422267 . T A 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.617;HaplotypeScore=7.1187;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.497;QD=17.92;ReadPosRankSum=1.672;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2094,231,0 chrX 422597 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.41;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2913,330,0 chrX 422897 . T G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.079;QD=20.58;ReadPosRankSum=1.632;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2893,327,0 chrX 422921 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.30;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2611,285,0 chrX 423030 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.244;DP=156;Dels=0.01;FS=19.316;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.434;QD=20.19;ReadPosRankSum=3.402;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3183,369,0 chrX 423483 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=157;Dels=0.00;FS=6.104;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.164;QD=22.84;ReadPosRankSum=2.418;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3586,405,0 chrX 423584 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2810,306,0 chrX 423783 . T C 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.335;QD=22.38;ReadPosRankSum=1.704;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2808,321,0 chrX 424383 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.53;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2466,273,0 chrX 424402 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.34;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2238,243,0 chrX 424406 . A T 2176 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.44;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2209,243,0 chrX 424695 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=23.49;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3547,402,0 chrX 424721 . G T 2582 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.45;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2615,291,0 chrX 424833 . A G 2257 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.33;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2290,261,0 chrX 424857 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.191;QD=18.91;ReadPosRankSum=1.696;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1867,213,0 chrX 424928 . G T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DP=85;Dels=0.04;FS=59.451;HaplotypeScore=15.5320;MLEAC=1;MLEAF=0.500;MQ=52.11;MQ0=0;MQRankSum=1.796;QD=0.19;ReadPosRankSum=-1.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,26:82:46:46,0,243 chrX 425486 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.1129;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.50;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4816,534,0 chrX 426379 . C A 7510.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=14.5856;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.77;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,313:316:99:7510,858,0 chrX 427445 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.20;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2297,252,0 chrX 427737 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=3.478;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.544;QD=23.35;ReadPosRankSum=1.709;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3433,393,0 chrX 428015 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.68;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2922,315,0 chrX 428088 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2945,324,0 chrX 428213 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.878;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.077;QD=24.60;ReadPosRankSum=1.650;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3182,360,0 chrX 428258 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8341;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.28;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2799,318,0 chrX 428489 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3468,390,0 chrX 428552 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=4.022;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.530;QD=22.15;ReadPosRankSum=1.687;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3433,399,0 chrX 429437 . A C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.676;QD=22.39;ReadPosRankSum=1.676;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4143,474,0 chrX 429608 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.62;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4630,510,0 chrX 429747 . G A 4953.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.63;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4953,573,0 chrX 430166 . C T 5283.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.2710;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.20;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5283,597,0 chrX 430190 . C A 5407.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.91;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5407,603,0 chrX 430766 . T C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.175;QD=22.13;ReadPosRankSum=1.684;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3197,372,0 chrX 430892 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.33;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3360,378,0 chrX 431050 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.09;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3649,402,0 chrX 431409 . A G 3007 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3040,345,0 chrX 431487 . C T 2448 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.92;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2481,276,0 chrX 431531 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.236;QD=20.96;ReadPosRankSum=1.680;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2841,318,0 chrX 431547 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=5.621;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.449;QD=19.61;ReadPosRankSum=1.706;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2700,309,0 chrX 431554 . C G 2674 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.24;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2707,306,0 chrX 431895 . T A 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.654;QD=23.39;ReadPosRankSum=1.706;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3190,348,0 chrX 432118 . C G 4149.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.98;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4149,468,0 chrX 432578 . A T 2545 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.52;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2578,291,0 chrX 433072 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1903,210,0 chrX 433686 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=179;Dels=0.00;FS=2.990;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.062;QD=20.31;ReadPosRankSum=2.381;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3635,420,0 chrX 434034 . C T 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=4.434;HaplotypeScore=7.0538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.001;QD=24.84;ReadPosRankSum=-0.204;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4000,441,0 chrX 434094 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.11;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3397,378,0 chrX 434615 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.693;QD=20.11;ReadPosRankSum=1.703;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2446,282,0 chrX 434806 . A G 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=172;Dels=0.00;FS=13.858;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.244;QD=21.95;ReadPosRankSum=2.875;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:3,166:172:99:3776,435,0 chrX 434839 . C T 4285.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.66;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4285,468,0 chrX 434989 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=152;Dels=0.00;FS=9.427;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.516;QD=21.18;ReadPosRankSum=2.384;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3253,366,0 chrX 435102 . T A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8712;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.21;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3487,402,0 chrX 435254 . A T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1470;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.67;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3858,426,0 chrX 435638 . T A 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=137;Dels=0.00;FS=6.925;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.691;QD=22.81;ReadPosRankSum=2.342;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3158,348,0 chrX 436111 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=24.22;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2019,222,0 chrX 436284 . A G 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;MQRankSum=-1.732;QD=20.19;ReadPosRankSum=1.666;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,51:53:99:1103,123,0 chrX 436312 . A G 822 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=20.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:96:855,96,0 chrX 436332 . T A 519 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;QD=17.90;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:552,63,0 chrX 436337 . T G 313 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.61;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:346,39,0 chrX 436479 . G A 147.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=16.34;SB=-2.504e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:180,21,0 chrX 436489 . A T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.9566;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=1.55;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:45,6,0 chrX 436602 . T C 485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.867;QD=20.21;ReadPosRankSum=1.445;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:60:518,60,0 chrX 436624 . G T 46.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=16.8240;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=1.88;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:9:79,9,0 chrX 437160 . A C 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=202;Dels=0.00;FS=3.011;HaplotypeScore=13.3812;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.735;QD=21.49;ReadPosRankSum=2.328;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4340,495,0 chrX 437758 . C G 3087 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.5065;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.00;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3120,369,0 chrX 437854 . T C 2957 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2990,342,0 chrX 438505 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.41;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3339,381,0 chrX 438630 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.89;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3536,381,0 chrX 438766 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.09;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2463,270,0 chrX 438853 . G T 2857 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.01;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2890,327,0 chrX 439624 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=6.2733;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;QD=8.90;SB=-3.662e+03 GT:AD:DP:GQ:PL 1/1:0,334:335:99:3013,327,0 chrX 439651 . G A 3576.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=12.8998;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=9.80;SB=-3.908e+03 GT:AD:DP:GQ:PL 1/1:0,360:365:99:3576,390,0 chrX 440160 . G T 5195.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=22.5008;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.89;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5195,579,0 chrX 440847 . T C 2844 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2877,330,0 chrX 441609 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=4.346;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.942;QD=20.72;ReadPosRankSum=1.707;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2872,327,0 chrX 441617 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.55;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2787,306,0 chrX 442275 . A T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.25;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4185,477,0 chrX 442524 . C T 3293.01 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=21.52;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3293,366,0 chrX 442529 . C T 3168 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.26;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3201,354,0 chrX 442530 . C G 3101 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.81;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3134,354,0 chrX 442545 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.39;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3194,354,0 chrX 442813 . T A 2675 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.24;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2708,294,0 chrX 443196 . T C 6511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=280;Dels=0.00;FS=2.871;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.559;QD=23.25;ReadPosRankSum=2.414;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:2,277:280:99:6511,735,0 chrX 443517 . A G 5188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=223;Dels=0.00;FS=7.530;HaplotypeScore=16.7629;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.292;QD=23.26;ReadPosRankSum=2.394;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:5188,582,0 chrX 443738 . A C 5133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=265;Dels=0.00;FS=9.129;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.181;QD=19.37;ReadPosRankSum=3.402;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:4,260:265:99:5133,582,0 chrX 443746 . G A 5291.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.27;SB=-3.330e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5291,579,0 chrX 443816 . G T 5918.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=16.6536;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.59;SB=-3.422e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5918,645,0 chrX 444241 . G A 4771.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.3159;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.69;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4771,522,0 chrX 444274 . A G 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=219;Dels=0.00;FS=2.839;HaplotypeScore=10.5313;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.862;QD=21.95;ReadPosRankSum=2.427;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4808,540,0 chrX 444290 . C T 4748.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.29;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4748,513,0 chrX 444865 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.57;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3012,342,0 chrX 444969 . T G 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.557;QD=20.41;ReadPosRankSum=1.642;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2380,270,0 chrX 445175 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.50;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2333,264,0 chrX 445186 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.61;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2045,228,0 chrX 445267 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3057,342,0 chrX 445306 . T C 2648 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2681,324,0 chrX 445395 . T G 1426 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.00;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1459,165,0 chrX 445483 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.66;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2470,270,0 chrX 445655 . A T 5189.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.0515;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.17;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5189,585,0 chrX 445696 . T A 5136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.6249;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.117;QD=22.23;ReadPosRankSum=1.702;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5136,582,0 chrX 445738 . T C 4920.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.76;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:4920,555,0 chrX 445741 . A G 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=251;Dels=0.00;FS=6.926;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.411;QD=19.60;ReadPosRankSum=2.380;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:2,246:251:99:4919,558,0 chrX 445825 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.99;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4529,495,0 chrX 445855 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.898;QD=23.19;ReadPosRankSum=1.639;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4337,492,0 chrX 446085 . G C 2541 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.89;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2574,291,0 chrX 446477 . C A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.6128;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.60;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4113,477,0 chrX 446576 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4392,483,0 chrX 446692 . A C 3335.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.85;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3335,381,0 chrX 447086 . G C 3637.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.04;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3637,420,0 chrX 447176 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.5982;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.18;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3210,354,0 chrX 447287 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.95;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3172,351,0 chrX 447484 . T C 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=159;Dels=0.00;FS=2.870;HaplotypeScore=9.1677;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.916;QD=23.74;ReadPosRankSum=2.418;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3774,423,0 chrX 447605 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.82;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3153,360,0 chrX 447638 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.82;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3287,369,0 chrX 447879 . G A 2399 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2432,279,0 chrX 447952 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2459,282,0 chrX 448328 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.0644;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.89;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3344,372,0 chrX 448448 . T C 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.474;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.513;QD=20.02;ReadPosRankSum=1.601;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3196,360,0 chrX 448845 . C A 1475 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.21;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1508,165,0 chrX 448869 . T C 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.0526;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.228;QD=19.29;ReadPosRankSum=-1.185;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1518,177,0 chrX 448936 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.20;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2724,306,0 chrX 449033 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2083,231,0 chrX 449256 . T C 3208 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3241,366,0 chrX 449329 . G A 4493.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4493,510,0 chrX 450386 . C A 5500.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.6319;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.31;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5500,600,0 chrX 450678 . A G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=121;Dels=0.00;FS=2.625;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.728;QD=22.38;ReadPosRankSum=2.409;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2741,309,0 chrX 451382 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.69;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3435,378,0 chrX 451942 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1953,219,0 chrX 452144 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2590,291,0 chrX 452436 . A G 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=208;Dels=0.00;FS=6.213;HaplotypeScore=13.6329;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.244;QD=22.86;ReadPosRankSum=2.378;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:2,204:208:99:4754,540,0 chrX 452579 . C T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.95;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4862,546,0 chrX 452919 . T A 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=222;Dels=0.00;FS=6.443;HaplotypeScore=12.6659;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.039;QD=22.83;ReadPosRankSum=2.394;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:5069,567,0 chrX 453420 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.71;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4059,456,0 chrX 453451 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.62;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3336,387,0 chrX 453740 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.92;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3684,402,0 chrX 454963 . G C 4572.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.9724;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.75;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4572,519,0 chrX 455260 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.27;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3764,417,0 chrX 455335 . T A 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=177;Dels=0.00;FS=3.787;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.519;QD=22.29;ReadPosRankSum=1.693;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3946,435,0 chrX 455390 . A T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.20;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3828,426,0 chrX 455458 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3372,387,0 chrX 455506 . T A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.0987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3397,384,0 chrX 456781 . T C 6374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=18.0192;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.282;QD=23.26;ReadPosRankSum=2.396;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,272:274:99:6374,723,0 chrX 456853 . G A 4669.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.82;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4669,510,0 chrX 456997 . T A 5926.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=15.7982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.16;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:5926,669,0 chrX 457504 . C T 5626.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.2693;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.04;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5626,624,0 chrX 457744 . C T 2024 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2057,225,0 chrX 457791 . C T 2017 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2050,219,0 chrX 457950 . A G 1094 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1127,129,0 chrX 458438 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=109.6795;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.59;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2506,276,0 chrX 458530 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.03;FS=0.000;HaplotypeScore=28.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3222,351,0 chrX 458980 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=156;Dels=0.02;FS=2.581;HaplotypeScore=6.1597;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.404;QD=22.59;ReadPosRankSum=2.941;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3524,396,0 chrX 459002 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.76;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3823,441,0 chrX 459291 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=3.424;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.669;QD=21.93;ReadPosRankSum=1.693;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3859,441,0 chrX 459351 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4932;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.570;QD=23.01;ReadPosRankSum=1.648;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3774,417,0 chrX 459420 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.72;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3323,381,0 chrX 459431 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.7798;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.686;QD=20.88;ReadPosRankSum=1.492;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3341,372,0 chrX 459643 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.16;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2719,306,0 chrX 459751 . A G 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.044;DP=91;Dels=0.04;FS=3.062;HaplotypeScore=80.7237;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-0.797;QD=16.03;ReadPosRankSum=2.247;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,83:87:99:1492,168,0 chrX 459858 . G T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.33;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4127,456,0 chrX 459864 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.57;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,208:213:99:3955,468,0 chrX 460024 . T G 7543.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.02;SB=-3.593e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:7543,855,0 chrX 460076 . T C 6345.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.03;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:6345,723,0 chrX 460229 . G A 4527.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.96;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4527,498,0 chrX 460257 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.5556;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.751;QD=19.58;ReadPosRankSum=1.712;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3407,396,0 chrX 460723 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.79;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2964,336,0 chrX 460832 . A G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=100;Dels=0.00;FS=2.979;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.808;QD=18.50;ReadPosRankSum=2.400;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1883,216,0 chrX 460833 . G C 1813 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=18.69;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1846,210,0 chrX 460997 . A G 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=5.954;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.817;QD=23.48;ReadPosRankSum=1.696;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4555,516,0 chrX 461089 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=184;Dels=0.00;FS=5.872;HaplotypeScore=7.8987;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.049;QD=22.77;ReadPosRankSum=2.896;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4190,474,0 chrX 461507 . G C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7040;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.98;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3608,408,0 chrX 461623 . T A 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.091;DP=144;Dels=0.00;FS=7.220;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.050;QD=21.38;ReadPosRankSum=2.381;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3112,342,0 chrX 461666 . A G 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8389;MLEAC=1;MLEAF=0.500;MQ=55.76;MQ0=0;MQRankSum=-0.141;QD=0.15;ReadPosRankSum=-3.681;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:112,6:118:48:48,0,98 chrX 461667 . A G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8305;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=0.808;QD=0.34;ReadPosRankSum=4.230;SB=-1.184e+03 GT:AD:DP:GQ:PL 0/1:7,112:119:71:71,0,72 chrX 461801 . T C 3188 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.10;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3221,363,0 chrX 461825 . T A 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.367;QD=16.59;ReadPosRankSum=1.707;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2323,255,0 chrX 461843 . C A 2379 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.75;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2412,279,0 chrX 461906 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.2816;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.921;QD=21.44;ReadPosRankSum=1.708;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3056,345,0 chrX 461975 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.93;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3325,372,0 chrX 462161 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=190;Dels=0.00;FS=2.580;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.280;QD=19.42;ReadPosRankSum=2.963;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:3690,423,0 chrX 462170 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.9648;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.518;QD=19.49;ReadPosRankSum=2.424;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3743,423,0 chrX 462595 . G T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.7410;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.32;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3516,387,0 chrX 462605 . A G 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=188;Dels=0.00;FS=2.989;HaplotypeScore=5.3050;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-0.703;QD=16.49;ReadPosRankSum=2.371;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3133,363,0 chrX 462634 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.358;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.395;QD=18.86;ReadPosRankSum=1.714;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3678,414,0 chrX 462689 . A G 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=202;Dels=0.00;FS=3.186;HaplotypeScore=14.3429;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.429;QD=19.65;ReadPosRankSum=1.715;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:3970,465,0 chrX 462924 . T A 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=4.952;HaplotypeScore=5.4656;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.002;QD=21.77;ReadPosRankSum=1.685;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3233,360,0 chrX 463068 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.48;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2482,282,0 chrX 463086 . T C 2013 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.74;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2046,240,0 chrX 463170 . T C 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3012;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.077;QD=22.63;ReadPosRankSum=-0.693;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2092,237,0 chrX 463222 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.42;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3812,423,0 chrX 463257 . A G 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=192;Dels=0.00;FS=5.418;HaplotypeScore=8.2215;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.884;QD=21.43;ReadPosRankSum=1.640;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4114,488,0 chrX 463428 . C G 5198.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.5719;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.66;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5198,591,0 chrX 463516 . C G 5600.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.13;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,249:253:99:5600,639,0 chrX 463561 . A G 5399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=242;Dels=0.00;FS=9.984;HaplotypeScore=8.3864;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.224;QD=22.31;ReadPosRankSum=2.946;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:5399,609,0 chrX 463573 . T C 5124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.152;QD=20.83;ReadPosRankSum=1.704;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5124,585,0 chrX 463641 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.7403;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.43;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4372,501,0 chrX 464252 . A G 2599 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2632,297,0 chrX 464438 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=26.17;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1760,192,0 chrX 465021 . G A 5366.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.0020;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5366,594,0 chrX 465282 . G A 5028.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.65;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5028,543,0 chrX 465795 . G A 5358.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.5612;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.01;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5358,597,0 chrX 465816 . T G 5335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=259;Dels=0.00;FS=3.937;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.034;QD=20.60;ReadPosRankSum=1.691;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:1,254:259:99:5335,594,0 chrX 466167 . A G 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.674;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.549;QD=19.07;ReadPosRankSum=2.938;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2798,315,0 chrX 466454 . C T 4383.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1910;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.95;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4383,489,0 chrX 467010 . C G 2368 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=14.27;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,163:166:99:2401,276,0 chrX 467107 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.95;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2456,267,0 chrX 467162 . A G 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.038;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.1925;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.802;QD=19.59;ReadPosRankSum=2.359;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1091,123,0 chrX 467199 . A G 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;DP=62;Dels=0.00;FS=11.761;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.404;QD=18.31;ReadPosRankSum=1.675;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:1,59:62:99:1168,138,0 chrX 467559 . A G 6481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=13.0064;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.598;QD=18.95;ReadPosRankSum=1.702;SB=-3.700e+03 GT:AD:DP:GQ:PL 1/1:1,341:342:99:6481,758,0 chrX 467565 . C T 6391.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=7.4167;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.85;SB=-4.234e+03 GT:AD:DP:GQ:PL 1/1:0,335:339:99:6391,711,0 chrX 467589 . C T 6230.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.82;SB=-3.975e+03 GT:AD:DP:GQ:PL 1/1:0,331:331:99:6230,690,0 chrX 467729 . G T 7265.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.43;SB=-3.871e+03 GT:AD:DP:GQ:PL 1/1:0,338:339:99:7265,834,0 chrX 468087 . C T 5225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.599;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.505;QD=20.65;ReadPosRankSum=-0.745;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:5225,550,0 chrX 468102 . G A 5012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.861;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.5607;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.274;QD=20.21;ReadPosRankSum=0.324;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:2,244:248:99:5012,511,0 chrX 468122 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.237;QD=19.05;ReadPosRankSum=1.641;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4325,492,0 chrX 468905 . G A 5546.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.01;FS=0.000;HaplotypeScore=4.3860;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.32;SB=-3.626e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:5546,624,0 chrX 468906 . A G 5434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=284;Dels=0.00;FS=6.014;HaplotypeScore=5.3727;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.622;QD=19.13;ReadPosRankSum=2.954;SB=-3.512e+03 GT:AD:DP:GQ:PL 1/1:3,281:284:99:5434,624,0 chrX 469095 . G A 4671.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.9308;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.31;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4671,516,0 chrX 469331 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.142;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.293;QD=21.79;ReadPosRankSum=1.706;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2974,333,0 chrX 469453 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.43;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3493,384,0 chrX 469457 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.07;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3472,390,0 chrX 469520 . T C 2739 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.76;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2772,318,0 chrX 470014 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2304,264,0 chrX 470130 . G A 548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.006;DP=44;Dels=0.00;FS=2.675;HaplotypeScore=6.7857;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-2.030;QD=12.45;ReadPosRankSum=-1.956;SB=-7.900e+01 GT:AD:DP:GQ:PL 1/1:15,29:44:66:581,66,0 chrX 470582 . T C 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.607;DP=222;Dels=0.00;FS=3.335;HaplotypeScore=15.4267;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.576;QD=21.63;ReadPosRankSum=-0.296;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4802,526,0 chrX 470777 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.6199;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.48;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3563,417,0 chrX 471040 . A G 2792 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=106.3615;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.86;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2825,321,0 chrX 471093 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.08;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2854,318,0 chrX 471486 . T A 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=18.8077;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.290;QD=21.97;ReadPosRankSum=0.103;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4065,453,0 chrX 471532 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.829;DP=167;Dels=0.00;FS=3.037;HaplotypeScore=13.8769;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=23.13;ReadPosRankSum=1.627;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3862,417,0 chrX 471666 . A G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=142;Dels=0.00;FS=2.955;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.216;QD=19.99;ReadPosRankSum=2.380;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2871,330,0 chrX 472011 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.190;QD=18.65;ReadPosRankSum=2.893;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2308,261,0 chrX 472013 . A C 2254 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2287,261,0 chrX 472288 . T C 1665 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;QD=24.85;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1698,195,0 chrX 472296 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;QD=23.75;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1743,192,0 chrX 475313 . A C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.767;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=37.9839;MLEAC=1;MLEAF=0.500;MQ=9.20;MQ0=112;MQRankSum=-5.818;QD=0.10;ReadPosRankSum=5.143;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,119:395:71:71,0,77 chrX 475334 . T C 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.825;DP=470;Dels=0.00;FS=0.000;HaplotypeScore=22.9989;MLEAC=1;MLEAF=0.500;MQ=9.67;MQ0=151;MQRankSum=9.046;QD=0.09;ReadPosRankSum=0.128;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:184,286:470:70:70,0,154 chrX 475661 . G A 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.702;DP=485;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=3.30;MQ0=322;MQRankSum=1.643;QD=0.10;ReadPosRankSum=-0.583;SB=-1.382e-03 GT:AD:DP:GQ:PL 0/1:180,304:485:31:80,0,31 chrX 475682 . G A 255.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.864;DP=430;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.95;MQ0=104;MQRankSum=1.592;QD=0.59;ReadPosRankSum=0.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,203:430:99:285,0,259 chrX 475687 . G C 311.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;DP=445;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.31;MQ0=104;MQRankSum=0.719;QD=0.70;ReadPosRankSum=0.975;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,213:445:99:341,0,293 chrX 475689 . G A 334.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.041;DP=451;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.52;MQ0=103;MQRankSum=1.186;QD=0.74;ReadPosRankSum=1.317;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,216:451:99:364,0,312 chrX 475740 . G A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;DP=679;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=9.45;MQ0=220;MQRankSum=0.014;QD=0.05;ReadPosRankSum=-1.984;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:602,77:679:67:67,0,1416 chrX 475796 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;DP=468;Dels=0.00;FS=0.000;HaplotypeScore=20.5782;MLEAC=1;MLEAF=0.500;MQ=7.27;MQ0=334;MQRankSum=1.043;QD=0.05;ReadPosRankSum=-1.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:428,28:468:52:52,0,190 chrX 484073 . A T 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=217;Dels=0.00;FS=5.583;HaplotypeScore=8.2048;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.774;QD=22.86;ReadPosRankSum=1.684;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4960,561,0 chrX 484353 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=14.4100;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=17.84;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2994,336,0 chrX 484372 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.88;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3129,351,0 chrX 484425 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.66;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3430,390,0 chrX 484754 . T A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3551,396,0 chrX 484997 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=135;Dels=0.00;FS=6.940;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.739;QD=22.99;ReadPosRankSum=2.413;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3136,357,0 chrX 485168 . G T 2996 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.03;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3029,333,0 chrX 485198 . G T 3132 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.90;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3165,348,0 chrX 485447 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.7505;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.66;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3617,402,0 chrX 485561 . A C 3850.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3850,435,0 chrX 485982 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.0968;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.08;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3901,441,0 chrX 486222 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.5179;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.36;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3645,411,0 chrX 486292 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.34;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2880,315,0 chrX 486334 . T G 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=128;Dels=0.03;FS=3.997;HaplotypeScore=11.2586;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.239;QD=17.95;ReadPosRankSum=1.704;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2331,264,0 chrX 486724 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=191;Dels=0.00;FS=10.040;HaplotypeScore=9.0651;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-2.059;QD=23.71;ReadPosRankSum=2.952;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:3,186:191:99:4528,510,0 chrX 487730 . A G 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=4.818;HaplotypeScore=10.3082;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.603;QD=23.75;ReadPosRankSum=1.658;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4489,504,0 chrX 487992 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.220;QD=23.86;ReadPosRankSum=1.712;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4056,459,0 chrX 488230 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=176;Dels=0.00;FS=8.561;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.040;QD=19.44;ReadPosRankSum=2.422;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3422,399,0 chrX 488782 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.4829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3419,384,0 chrX 488961 . A G 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=103;Dels=0.00;FS=2.852;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.784;QD=20.79;ReadPosRankSum=2.377;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2174,249,0 chrX 489013 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.96;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2024,225,0 chrX 489262 . A G 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.260;QD=20.87;ReadPosRankSum=1.693;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1911,216,0 chrX 489283 . A G 1947 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.88;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1980,225,0 chrX 489536 . G C 1752 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.61;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1785,201,0 chrX 490707 . T C 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=176;Dels=0.00;FS=2.874;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.207;QD=21.74;ReadPosRankSum=2.338;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3826,444,0 chrX 490924 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.02;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3391,384,0 chrX 491635 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=6.8174;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=17.91;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2111,246,0 chrX 491650 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.787;HaplotypeScore=6.3707;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.276;QD=19.34;ReadPosRankSum=2.405;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,107:111:99:2180,249,0 chrX 491686 . T A 2595 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.18;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2628,288,0 chrX 492238 . G A 1100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.206;DP=54;Dels=0.00;FS=8.418;HaplotypeScore=2.6500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.069;QD=20.37;ReadPosRankSum=-0.069;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:2,52:54:91:1133,91,0 chrX 492486 . A C 1568 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.40;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1601,180,0 chrX 492531 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.90;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1865,213,0 chrX 493068 . T C 4201.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4201,474,0 chrX 493204 . G A 4303.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.39;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4303,477,0 chrX 493575 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.29;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3201,360,0 chrX 494352 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=3.571;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.916;QD=22.88;ReadPosRankSum=1.644;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3592,423,0 chrX 494994 . C G 2618 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.9968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2651,306,0 chrX 495112 . T A 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.930;HaplotypeScore=7.4680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.706;QD=22.11;ReadPosRankSum=1.706;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2930,327,0 chrX 495458 . G A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.58;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4198,462,0 chrX 496029 . T C 4845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=218;Dels=0.00;FS=9.913;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.023;QD=22.22;ReadPosRankSum=2.594;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:3,212:218:99:4845,543,0 chrX 496140 . G A 5406.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5406,588,0 chrX 496391 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=170;Dels=0.00;FS=3.089;HaplotypeScore=11.7764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.653;QD=21.05;ReadPosRankSum=1.670;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3579,411,0 chrX 496522 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.54;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3234,366,0 chrX 497359 . A C 2180 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2213,258,0 chrX 497589 . A G 5206.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.2575;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.34;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,241:244:99:5206,591,0 chrX 497602 . C A 5534.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.22;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5534,615,0 chrX 498148 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.69;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2847,321,0 chrX 498149 . A G 2787 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=20.64;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2820,321,0 chrX 498452 . G T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.47;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4365,474,0 chrX 498735 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2687,294,0 chrX 498791 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.49;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2676,297,0 chrX 498893 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.058;QD=23.94;ReadPosRankSum=1.709;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3615,405,0 chrX 499082 . T C 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=4.006;HaplotypeScore=14.5001;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.914;QD=12.12;ReadPosRankSum=1.538;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:1985,225,0 chrX 499118 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=15.23;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2272,246,0 chrX 499158 . C A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.03;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3478,381,0 chrX 499382 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3807,426,0 chrX 500057 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.2939;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.68;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2945,327,0 chrX 500147 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.66;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2567,285,0 chrX 500159 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.27;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2661,297,0 chrX 500192 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.81;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2781,315,0 chrX 500362 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.19;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3226,345,0 chrX 500407 . C T 2806 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.6232;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.45;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2839,315,0 chrX 501283 . C T 2333 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.10;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2366,255,0 chrX 501331 . C T 2405 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2438,267,0 chrX 502163 . G A 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.0089;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.568;QD=23.27;ReadPosRankSum=-1.326;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3035,317,0 chrX 502687 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2821,309,0 chrX 502861 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2799,318,0 chrX 502945 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2894,324,0 chrX 503263 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3669,405,0 chrX 503332 . C G 3020 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.2641;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.41;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3053,345,0 chrX 503542 . A G 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.733;QD=21.16;ReadPosRankSum=1.699;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2255,255,0 chrX 503675 . C A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.10;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4066,453,0 chrX 503688 . G T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.83;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3749,423,0 chrX 503779 . A G 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=176;Dels=0.00;FS=4.531;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.594;QD=24.61;ReadPosRankSum=1.712;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4332,486,0 chrX 503880 . G C 4938.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.24;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,215:222:99:4938,555,0 chrX 503940 . C T 4926.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.91;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4926,561,0 chrX 504158 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.852;QD=21.11;ReadPosRankSum=1.704;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2608,294,0 chrX 504709 . T C 5113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=232;Dels=0.00;FS=4.570;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.165;QD=22.04;ReadPosRankSum=1.717;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5113,579,0 chrX 504862 . A C 3829.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.64;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3829,432,0 chrX 505150 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.09;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3838,438,0 chrX 505156 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.95;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3561,393,0 chrX 505163 . A G 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=159;Dels=0.00;FS=12.324;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.830;QD=19.19;ReadPosRankSum=3.303;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:4,153:159:99:3084,363,0 chrX 505193 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.65;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3000,336,0 chrX 505297 . A T 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=182;Dels=0.00;FS=2.739;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.965;QD=23.23;ReadPosRankSum=2.355;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4227,459,0 chrX 505396 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.31;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2698,306,0 chrX 505404 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.41;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2809,309,0 chrX 505450 . C A 2792 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.68;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2825,321,0 chrX 505554 . T G 2882 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.52;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2915,327,0 chrX 505607 . T C 3102 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.32;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3135,354,0 chrX 506036 . C A 1764 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.84;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1797,195,0 chrX 506055 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.50;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1427,156,0 chrX 506424 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2885,315,0 chrX 506521 . A G 2635 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.75;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2668,312,0 chrX 506574 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.3611;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.541;QD=21.55;ReadPosRankSum=1.700;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2425,282,0 chrX 506780 . G T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.20;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3550,402,0 chrX 506881 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.70;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2659,300,0 chrX 506903 . T C 2372 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.45;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2405,276,0 chrX 507451 . A G 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.350;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.620;QD=21.70;ReadPosRankSum=1.695;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2051,234,0 chrX 507511 . T C 1870 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.26;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1903,219,0 chrX 508237 . G T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.23;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3541,390,0 chrX 508258 . T C 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=3.108;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.250;QD=20.96;ReadPosRankSum=1.674;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3793,426,0 chrX 508514 . T A 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=184;Dels=0.00;FS=6.061;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.907;QD=21.86;ReadPosRankSum=2.819;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4022,441,0 chrX 508529 . A C 3812.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.95;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3812,435,0 chrX 508682 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=178;Dels=0.00;FS=9.207;HaplotypeScore=19.4615;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.622;QD=21.52;ReadPosRankSum=2.422;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3830,432,0 chrX 509431 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.47;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4112,468,0 chrX 509825 . T A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.21;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3922,435,0 chrX 510183 . C T 1986 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.57;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2019,225,0 chrX 510548 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3157,351,0 chrX 510695 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.79;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3493,390,0 chrX 510914 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.99;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3430,387,0 chrX 510934 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.611;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-1.402;QD=20.73;ReadPosRankSum=1.685;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3080,345,0 chrX 510952 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=18.59;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2599,297,0 chrX 510956 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=19.02;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2544,276,0 chrX 511281 . T C 1961 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.61;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1994,225,0 chrX 511607 . A G 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.3755;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-1.732;QD=21.81;ReadPosRankSum=1.701;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2519,285,0 chrX 511949 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.17;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3248,354,0 chrX 512002 . G T 2929 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2962,321,0 chrX 512096 . C T 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.009;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.828;QD=21.51;ReadPosRankSum=-0.407;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2528,257,0 chrX 512140 . T C 2611 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.95;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2644,300,0 chrX 512272 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3635,402,0 chrX 512347 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.15;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3197,351,0 chrX 512491 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.18;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3072,336,0 chrX 512710 . T C 2530 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2563,288,0 chrX 513026 . G C 2793 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2826,327,0 chrX 513191 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0200;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.55;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3094,351,0 chrX 513265 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.33;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3849,432,0 chrX 513398 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.01;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3385,372,0 chrX 513423 . T C 3002 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.99;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3035,345,0 chrX 514163 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=21.85;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2633,288,0 chrX 514177 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=20.74;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2480,273,0 chrX 514245 . A G 2704 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.91;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2737,312,0 chrX 514246 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=19.03;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2773,309,0 chrX 514264 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.22;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2944,324,0 chrX 514273 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=1.331;QD=18.42;ReadPosRankSum=1.685;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:2777,324,0 chrX 514366 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=170;Dels=0.00;FS=2.380;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.858;QD=22.66;ReadPosRankSum=3.408;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:3853,438,0 chrX 514465 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.61;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3544,399,0 chrX 514490 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.90;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3614,402,0 chrX 514559 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3756;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.17;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4085,444,0 chrX 514663 . G A 3919.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.3781;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.47;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3919,432,0 chrX 514702 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.74;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3870,429,0 chrX 514731 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.155;QD=22.04;ReadPosRankSum=1.711;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3571,414,0 chrX 514825 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.65;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3397,384,0 chrX 514851 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.98;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3585,402,0 chrX 515263 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.99;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2636,288,0 chrX 515338 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;DP=181;Dels=0.00;FS=11.592;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.326;QD=21.61;ReadPosRankSum=3.777;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:5,174:181:99:3912,444,0 chrX 515351 . A G 4323.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.9932;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.17;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4323,492,0 chrX 515450 . C T 5475.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.23;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5475,606,0 chrX 516019 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.04;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3231,354,0 chrX 516099 . T C 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.061;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.652;QD=22.17;ReadPosRankSum=1.672;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3836,435,0 chrX 516190 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.00;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1673,192,0 chrX 516246 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2041,231,0 chrX 516436 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.62;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2200,243,0 chrX 516802 . T G 2996 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.87;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3029,339,0 chrX 516831 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.03;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2578,285,0 chrX 516847 . T C 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=114;Dels=0.00;FS=9.014;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.846;QD=18.93;ReadPosRankSum=2.340;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2191,249,0 chrX 517244 . G C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.31;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3548,411,0 chrX 517494 . T G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.27;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3467,396,0 chrX 517501 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.19;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3390,369,0 chrX 517657 . T C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=6.710;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.443;QD=22.02;ReadPosRankSum=2.391;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2807,324,0 chrX 517720 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=4.865;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.111;QD=20.76;ReadPosRankSum=1.683;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2960,333,0 chrX 517912 . T A 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;DP=74;Dels=0.00;FS=17.497;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;MQRankSum=1.375;QD=22.50;ReadPosRankSum=3.167;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:4,70:74:99:1698,189,0 chrX 518283 . A T 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=158;Dels=0.00;FS=3.027;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=2.185;QD=17.78;ReadPosRankSum=2.387;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2843,315,0 chrX 518451 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.27;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2095,237,0 chrX 518465 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.47;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1998,225,0 chrX 518494 . G C 2194 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.31;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2227,255,0 chrX 518528 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.17;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2700,294,0 chrX 518647 . G T 1361 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=5.4430;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=16.40;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1394,159,0 chrX 518650 . A G 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=-0.091;QD=17.26;ReadPosRankSum=1.687;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1345,153,0 chrX 518721 . C T 1582 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=20.03;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1615,183,0 chrX 518745 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.51;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1603,180,0 chrX 519377 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1452,162,0 chrX 519482 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=22.33;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1395,153,0 chrX 519506 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.76;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1194,129,0 chrX 520379 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0921;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.39;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3813,429,0 chrX 521282 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.2544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4423,489,0 chrX 521645 . T G 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=190;Dels=0.00;FS=5.764;HaplotypeScore=12.5433;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.064;QD=23.15;ReadPosRankSum=2.899;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:3,185:190:99:4399,504,0 chrX 522284 . T C 5761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=296;Dels=0.00;FS=9.076;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.058;QD=19.46;ReadPosRankSum=2.969;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:3,291:296:99:5761,666,0 chrX 522287 . A G 5669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.558;DP=298;Dels=0.00;FS=15.274;HaplotypeScore=10.5863;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-2.187;QD=19.02;ReadPosRankSum=3.821;SB=-3.514e+03 GT:AD:DP:GQ:PL 1/1:5,292:298:99:5669,654,0 chrX 522481 . C G 7487.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=26.9705;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.35;SB=-3.618e+03 GT:AD:DP:GQ:PL 1/1:1,324:335:99:7487,855,0 chrX 522533 . A G 6868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=331;Dels=0.00;FS=1.766;HaplotypeScore=24.9667;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.528;QD=20.75;ReadPosRankSum=2.319;SB=-3.776e+03 GT:AD:DP:GQ:PL 1/1:5,323:331:99:6868,770,0 chrX 522608 . T C 7061.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.906;DP=363;Dels=0.00;FS=27.461;HaplotypeScore=43.7710;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.564;QD=19.45;ReadPosRankSum=5.333;SB=-3.970e+03 GT:AD:DP:GQ:PL 1/1:10,351:363:99:7061,819,0 chrX 522788 . A G 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.052;DP=270;Dels=0.00;FS=10.314;HaplotypeScore=19.6399;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.624;QD=17.00;ReadPosRankSum=4.142;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:6,263:270:99:4591,543,0 chrX 522917 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.4894;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.50;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4326,477,0 chrX 523115 . G A 4379.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.57;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4379,504,0 chrX 523205 . C T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.00;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4508,513,0 chrX 523373 . C T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.6302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4508,507,0 chrX 523499 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.00;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2885,327,0 chrX 523867 . T G 1341 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.73;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1374,156,0 chrX 523921 . G A 65.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.463;DP=78;Dels=0.01;FS=1.294;HaplotypeScore=38.2096;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;MQRankSum=1.220;QD=0.84;ReadPosRankSum=2.417;SB=-5.879e+02 GT:AD:DP:GQ:PL 1/1:10,67:77:12:98,12,0 chrX 523946 . C T 546 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=7.91;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:63:579,63,0 chrX 523960 . T G 569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;MQRankSum=-0.140;QD=7.69;ReadPosRankSum=1.685;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:69:602,69,0 chrX 523980 . T C 704 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=76.7839;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=8.59;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:84:737,84,0 chrX 523984 . T C 695 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=8.69;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:84:728,84,0 chrX 523997 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=8.33;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:78:708,78,0 chrX 523998 . G A 679 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=8.28;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:78:712,78,0 chrX 524113 . T G 2439 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=22.58;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2472,285,0 chrX 524166 . G C 3203 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=22.56;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3236,372,0 chrX 524270 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=1.507;QD=20.32;ReadPosRankSum=1.704;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2532,282,0 chrX 524292 . C G 2304 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=19.36;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2337,264,0 chrX 524341 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=18.85;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1824,201,0 chrX 524370 . T C 1432 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.4998;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=14.04;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1465,174,0 chrX 524377 . T C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=4.858;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-1.149;QD=15.77;ReadPosRankSum=1.664;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1642,192,0 chrX 524477 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.30;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1738,189,0 chrX 524507 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=20.69;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1585,174,0 chrX 524523 . T C 1594 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=18.98;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1627,186,0 chrX 524550 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=16.63;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1563,177,0 chrX 524557 . A T 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=8.674;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;MQRankSum=-0.731;QD=16.91;ReadPosRankSum=2.393;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1487,162,0 chrX 524596 . C A 1241 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=17.24;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1274,144,0 chrX 524618 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=17.73;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:955,108,0 chrX 524704 . G T 644 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.95;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:75:677,75,0 chrX 525388 . G C 5878.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=19.9033;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.61;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:5878,660,0 chrX 525745 . C A 180.03 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=41.6069;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=3.21;SB=-9.604e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:24:213,24,0 chrX 525907 . A T 2066 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.82;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2099,237,0 chrX 526305 . A G 4165.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.64;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4165,492,0 chrX 526311 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=192;Dels=0.00;FS=15.392;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.534;QD=21.47;ReadPosRankSum=2.931;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:4123,486,0 chrX 526730 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.00;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2011,225,0 chrX 526954 . A T 2476 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2509,282,0 chrX 527043 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=175;Dels=0.00;FS=2.947;HaplotypeScore=9.1315;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.200;QD=22.83;ReadPosRankSum=2.422;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3995,450,0 chrX 528114 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.27;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4142,471,0 chrX 528153 . C T 4661.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.90;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4661,513,0 chrX 528639 . A T 7287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=318;Dels=0.00;FS=3.024;HaplotypeScore=19.8056;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.629;QD=22.92;ReadPosRankSum=2.419;SB=-4.070e+03 GT:AD:DP:GQ:PL 1/1:2,316:318:99:7287,796,0 chrX 528849 . G A 5061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.3128;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.490;QD=23.87;ReadPosRankSum=-0.948;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5061,539,0 chrX 528913 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.680;DP=164;Dels=0.00;FS=12.073;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.223;QD=21.75;ReadPosRankSum=3.787;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:5,157:164:99:3567,405,0 chrX 529045 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.262;HaplotypeScore=6.6087;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.707;QD=24.60;ReadPosRankSum=1.708;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3493,390,0 chrX 529296 . A T 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=14.4042;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.362;QD=23.25;ReadPosRankSum=1.695;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4348,480,0 chrX 529374 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-1.429;QD=18.76;ReadPosRankSum=1.656;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2622,300,0 chrX 529383 . A G 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=141;Dels=0.00;FS=2.953;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.342;QD=17.15;ReadPosRankSum=2.309;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2451,279,0 chrX 529442 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.31;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3559,399,0 chrX 529470 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.908;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.132;QD=21.85;ReadPosRankSum=1.709;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3278,369,0 chrX 529486 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.638;QD=20.99;ReadPosRankSum=1.706;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2866,321,0 chrX 529549 . T C 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.645;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=0.102;QD=17.38;ReadPosRankSum=1.630;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1806,213,0 chrX 529553 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=18.78;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1986,219,0 chrX 529640 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.13;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2547,285,0 chrX 529795 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.5174;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.98;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2363,267,0 chrX 530061 . G T 3197 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.05;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3230,363,0 chrX 530079 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.17;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3303,372,0 chrX 530154 . C A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3568,399,0 chrX 530394 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4006,441,0 chrX 530494 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1523;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4344,480,0 chrX 530778 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.063;DP=140;Dels=0.00;FS=2.969;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.079;QD=20.81;ReadPosRankSum=2.362;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2946,333,0 chrX 531028 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.24;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4290,465,0 chrX 531195 . G T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.90;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4030,447,0 chrX 531521 . G A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=11.2034;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.15;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3985,435,0 chrX 531568 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=25.10;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4493,498,0 chrX 531599 . T G 4481.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=23.96;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4481,498,0 chrX 531713 . T C 4552.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.88;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4552,525,0 chrX 531747 . T G 4381.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=20.47;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4381,501,0 chrX 531776 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=20.30;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3613,402,0 chrX 531785 . T G 3436.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=18.78;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3436,390,0 chrX 531794 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=4.472;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;MQRankSum=-1.423;QD=17.61;ReadPosRankSum=1.691;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2992,354,0 chrX 531809 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.2798;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=18.32;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3257,375,0 chrX 531918 . G C 2732 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.0611;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=19.65;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2765,327,0 chrX 532280 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=164;Dels=0.00;FS=2.965;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.475;QD=19.36;ReadPosRankSum=2.389;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3208,378,0 chrX 532287 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.95;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3298,378,0 chrX 532293 . A T 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=174;Dels=0.00;FS=7.343;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.529;QD=19.25;ReadPosRankSum=2.407;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3349,342,0 chrX 532511 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6201;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.23;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4414,486,0 chrX 532884 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.28;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3585,405,0 chrX 532916 . T A 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=3.227;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.211;QD=22.84;ReadPosRankSum=1.690;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3746,423,0 chrX 533424 . A C 5855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=257;Dels=0.00;FS=2.633;HaplotypeScore=17.4332;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.899;QD=22.78;ReadPosRankSum=2.392;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:2,252:257:99:5855,666,0 chrX 533726 . T C 2683 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.17;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2716,315,0 chrX 534618 . G A 4837.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4837,540,0 chrX 534755 . A G 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.561;QD=21.05;ReadPosRankSum=1.707;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2980,345,0 chrX 534756 . A G 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.805;QD=20.65;ReadPosRankSum=1.683;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3006,342,0 chrX 535430 . T C 5969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=255;Dels=0.00;FS=2.881;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.140;QD=23.41;ReadPosRankSum=2.401;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5969,675,0 chrX 535622 . T C 4957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=4.228;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.978;QD=21.93;ReadPosRankSum=1.717;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4957,573,0 chrX 535642 . T C 5034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.316;QD=21.33;ReadPosRankSum=0.120;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5034,567,0 chrX 535873 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.02;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3072,345,0 chrX 535930 . G C 2298 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2331,264,0 chrX 536822 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2671,294,0 chrX 537677 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.61;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1867,210,0 chrX 537808 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=24.48;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1869,210,0 chrX 537810 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=24.31;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1929,213,0 chrX 537839 . T G 1810 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=25.14;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1843,210,0 chrX 537858 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=21.97;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1615,183,0 chrX 538417 . A G 53.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.10;MQ0=6;MQRankSum=0.731;QD=4.86;ReadPosRankSum=0.731;SB=-3.766e+01 GT:AD:DP:GQ:PL 0/1:3,8:11:7:83,0,7 chrX 538426 . T C 49.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.6808;MLEAC=1;MLEAF=0.500;MQ=16.53;MQ0=3;MQRankSum=0.731;QD=6.18;ReadPosRankSum=0.731;SB=-3.766e+01 GT:AD:DP:GQ:PL 0/1:1,7:8:7:79,0,7 chrX 538432 . A T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.00;FS=10.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=0;MQRankSum=1.231;QD=3.18;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,2:5:6:47,6,0 chrX 538435 . A C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.294;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=-2.396;QD=0.46;ReadPosRankSum=2.341;SB=-6.976e+01 GT:AD:DP:GQ:PL 1/1:43,2:45:6:52,6,0 chrX 538490 . G A 613 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=11.35;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:72:646,72,0 chrX 538514 . C G 963 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=14.37;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:996,114,0 chrX 538523 . T C 1257 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=15.91;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1290,150,0 chrX 539272 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=19.95;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1689,192,0 chrX 539275 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=20.01;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1674,186,0 chrX 539286 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.06;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1729,198,0 chrX 539353 . A G 2187 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.32;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2220,252,0 chrX 539441 . G C 2234 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.34;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2267,261,0 chrX 539503 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=23.55;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2341,252,0 chrX 539522 . C A 2202 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.17;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2235,249,0 chrX 539780 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.48;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1880,207,0 chrX 539975 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.87;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2778,303,0 chrX 540022 . C G 2607 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.28;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2640,297,0 chrX 540077 . T C 2895 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2928,333,0 chrX 540433 . A G 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.309;QD=23.39;ReadPosRankSum=1.713;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4328,504,0 chrX 540549 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.0817;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=23.52;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2950,327,0 chrX 540603 . G T 2814 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=24.47;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2847,303,0 chrX 540668 . T C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-0.892;QD=23.42;ReadPosRankSum=1.697;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2375,270,0 chrX 540782 . A G 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.268;DP=72;Dels=0.00;FS=6.208;HaplotypeScore=5.9912;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;MQRankSum=1.635;QD=21.54;ReadPosRankSum=1.049;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1584,183,0 chrX 540790 . G T 1164 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=21.96;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1197,132,0 chrX 540793 . G A 960 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=22.86;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:993,111,0 chrX 540794 . G T 960 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=23.41;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:993,108,0 chrX 540805 . G T 496 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.08;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:57:529,57,0 chrX 540806 . G T 461 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.73;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:57:494,57,0 chrX 540808 . C T 461 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.73;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:57:494,57,0 chrX 540810 . C T 502 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.31;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,25:26:57:535,57,0 chrX 540813 . C T 519 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.74;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:60:552,60,0 chrX 540841 . C T 908 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=18.16;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:941,108,0 chrX 540916 . T C 824.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.099;DP=69;Dels=0.00;FS=71.615;HaplotypeScore=7.3764;MLEAC=1;MLEAF=0.500;MQ=33.91;MQ0=2;MQRankSum=4.145;QD=11.94;ReadPosRankSum=-5.404;SB=-4.602e+01 GT:AD:DP:GQ:PL 0/1:14,55:69:99:854,0,107 chrX 540958 . A G 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=15;Dels=0.00;FS=14.564;HaplotypeScore=1.9445;MLEAC=1;MLEAF=0.500;MQ=20.53;MQ0=2;MQRankSum=-0.437;QD=7.80;ReadPosRankSum=2.680;SB=1.75 GT:AD:DP:GQ:PL 0/1:6,9:15:71:147,0,71 chrX 540968 . G A 176.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=1;QD=16.00;SB=-2.499e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:27:209,27,0 chrX 540972 . A T 145.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.00;MQ0=0;MQRankSum=-0.751;QD=16.11;ReadPosRankSum=0.751;SB=-2.697e+01 GT:AD:DP:GQ:PL 1/1:1,8:9:24:178,24,0 chrX 541059 . G A 209.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=0;MQRankSum=2.073;QD=16.11;ReadPosRankSum=2.073;SB=0.369 GT:AD:DP:GQ:PL 0/1:2,11:13:7:239,0,7 chrX 541067 . C A 309 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=20.60;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:342,39,0 chrX 541096 . A C 33.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=19.66;MQ0=0;MQRankSum=0.727;QD=6.61;ReadPosRankSum=-0.727;SB=10.91 GT:AD:DP:GQ:PL 1/1:1,3:5:9:65,9,0 chrX 541411 . T G 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;DP=22;Dels=0.00;FS=17.076;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=4;MQRankSum=2.251;QD=2.41;ReadPosRankSum=-1.659;SB=-2.963e+00 GT:AD:DP:GQ:PL 0/1:7,15:22:34:83,0,34 chrX 541447 . C T 133.13 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=2.83;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:18:166,18,0 chrX 541613 . A T 1555 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=23.92;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1588,177,0 chrX 541969 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=20.85;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2994,327,0 chrX 542014 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=14.2204;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.597;QD=20.09;ReadPosRankSum=1.702;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2363,264,0 chrX 542131 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.02;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3228,357,0 chrX 542200 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3405,378,0 chrX 542293 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.89;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4290,483,0 chrX 542308 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=7.971;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.282;QD=20.40;ReadPosRankSum=2.423;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3836,435,0 chrX 542637 . G A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.2085;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=22.45;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4130,459,0 chrX 542954 . A G 2514 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=2;QD=22.25;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2547,291,0 chrX 543047 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=154;Dels=0.00;FS=7.022;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.412;QD=21.39;ReadPosRankSum=2.417;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3294,375,0 chrX 543067 . T G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=6.731;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.694;QD=20.84;ReadPosRankSum=2.383;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3138,351,0 chrX 543104 . T C 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=11.1658;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.394;QD=17.62;ReadPosRankSum=1.708;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2605,294,0 chrX 543140 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=11.8562;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.09;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3049,333,0 chrX 543170 . A G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.155;QD=21.20;ReadPosRankSum=1.706;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2874,321,0 chrX 543250 . T G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.517;QD=24.34;ReadPosRankSum=1.665;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3748,426,0 chrX 543343 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.54;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3313,381,0 chrX 543490 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1918;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.74;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2685,303,0 chrX 543512 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=22.50;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2576,282,0 chrX 543697 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=1;QD=23.00;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2701,300,0 chrX 543712 . A T 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=3.624;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=1;MQRankSum=-0.389;QD=19.68;ReadPosRankSum=1.544;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2591,291,0 chrX 543721 . A G 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=130;Dels=0.00;FS=3.438;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=1;MQRankSum=-1.110;QD=19.45;ReadPosRankSum=1.678;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2562,294,0 chrX 543756 . A G 2033 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=17.83;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2066,237,0 chrX 543776 . T C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.688;DP=116;Dels=0.00;FS=2.414;HaplotypeScore=11.4729;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.920;QD=16.99;ReadPosRankSum=2.724;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:3,110:116:99:2004,228,0 chrX 543878 . T G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.225;QD=23.48;ReadPosRankSum=1.687;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3686,414,0 chrX 544304 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.96;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3887,420,0 chrX 544322 . C G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.23;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:3673,417,0 chrX 544361 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=18.81;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3556,411,0 chrX 544484 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.51;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3835,423,0 chrX 544493 . T C 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=3.830;HaplotypeScore=5.1048;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.000;QD=19.78;ReadPosRankSum=1.695;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3680,426,0 chrX 544523 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.755;QD=19.65;ReadPosRankSum=1.437;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3694,423,0 chrX 545026 . C T 4352.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.7362;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.06;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4352,483,0 chrX 545038 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.1640;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.761;QD=19.39;ReadPosRankSum=1.700;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:1,213:218:99:4226,477,0 chrX 545092 . A G 4387.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.31;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4387,489,0 chrX 545209 . T C 4993.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.59;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4993,561,0 chrX 545233 . C T 5313.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.71;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5313,585,0 chrX 545249 . A G 5354.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.25;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5354,615,0 chrX 545654 . T C 5856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=265;Dels=0.00;FS=8.372;HaplotypeScore=20.1971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.451;QD=22.10;ReadPosRankSum=2.394;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:2,262:265:99:5856,666,0 chrX 545817 . G C 2807 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=16.3727;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.84;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2840,333,0 chrX 545885 . G C 4308.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.44;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4308,495,0 chrX 546078 . T C 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.251;QD=21.23;ReadPosRankSum=-0.289;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3090,351,0 chrX 546103 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.164;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.545;QD=20.27;ReadPosRankSum=2.051;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2912,308,0 chrX 546305 . T C 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.2199;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.801;QD=23.03;ReadPosRankSum=1.663;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4629,528,0 chrX 546527 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.454;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.1768;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.931;QD=18.95;ReadPosRankSum=1.297;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3771,426,0 chrX 546530 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=198;Dels=0.00;FS=2.726;HaplotypeScore=4.1768;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.106;QD=18.62;ReadPosRankSum=2.312;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:3687,423,0 chrX 546674 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8007;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.35;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3486,387,0 chrX 546746 . T A 3109 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.21;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3142,351,0 chrX 547067 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.28;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4541,495,0 chrX 547200 . C T 5226.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.6444;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.16;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5226,576,0 chrX 547458 . A G 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=206;Dels=0.00;FS=9.084;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.660;QD=21.66;ReadPosRankSum=3.341;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:4,201:206:99:4462,507,0 chrX 547637 . C T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.8519;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.71;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4497,516,0 chrX 547820 . C A 4623.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.23;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4623,507,0 chrX 547903 . T C 4858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.130;QD=22.49;ReadPosRankSum=1.716;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:4858,558,0 chrX 548018 . C T 4969.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.38;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4969,567,0 chrX 548133 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=16.52;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2693,300,0 chrX 548204 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.83;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3265,378,0 chrX 548463 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.02;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1949,222,0 chrX 548477 . G C 2071 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=7.1149;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.57;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2104,237,0 chrX 548654 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=3.352;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.568;QD=19.12;ReadPosRankSum=1.703;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2308,273,0 chrX 548666 . A G 2239 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=125;Dels=0.00;FS=10.593;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.121;QD=17.91;ReadPosRankSum=2.944;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2272,261,0 chrX 548667 . A T 2326 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.575;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.239;QD=18.91;ReadPosRankSum=1.704;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2359,261,0 chrX 548670 . A G 2155 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.58;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2188,252,0 chrX 549001 . G C 7735.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=24.5679;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-4.175e+03 GT:AD:DP:GQ:PL 1/1:0,331:336:99:7735,876,0 chrX 549157 . G A 7640.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=14.1737;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.34;SB=-3.893e+03 GT:AD:DP:GQ:PL 1/1:0,341:342:99:7640,841,0 chrX 549323 . G A 6135.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=17.5794;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.38;SB=-3.086e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6135,696,0 chrX 549542 . T C 4908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=231;Dels=0.00;FS=6.078;HaplotypeScore=15.1816;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.004;QD=21.25;ReadPosRankSum=2.934;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:3,226:231:99:4908,570,0 chrX 550026 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3384;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=22.37;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2292,249,0 chrX 550048 . G T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=96.2272;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=0.20;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:6:51,6,0 chrX 550062 . T C 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.625;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.732;QD=21.83;ReadPosRankSum=1.699;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2347,267,0 chrX 550306 . T C 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=0.830;QD=17.43;ReadPosRankSum=1.696;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1724,198,0 chrX 550314 . G T 1637 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=17.99;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1670,189,0 chrX 550333 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=0.173;QD=15.61;ReadPosRankSum=1.663;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1594,186,0 chrX 550347 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=16.52;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1817,210,0 chrX 550400 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.61;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2268,249,0 chrX 550587 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.26;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3406,372,0 chrX 550609 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=5.286;HaplotypeScore=9.6768;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.390;QD=22.13;ReadPosRankSum=1.709;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3386,387,0 chrX 550738 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.15;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3913,444,0 chrX 551089 . G A 5307.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:5307,603,0 chrX 551409 . C A 4542.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.3745;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.66;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4542,501,0 chrX 551577 . C G 3653.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=16.9501;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.24;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,166:172:99:3653,408,0 chrX 551614 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=3.424;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.661;QD=23.68;ReadPosRankSum=1.690;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3931,450,0 chrX 551901 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=147;Dels=0.00;FS=6.801;HaplotypeScore=14.2125;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.160;QD=21.95;ReadPosRankSum=2.399;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3259,369,0 chrX 552134 . G A 5719.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.9577;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.63;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5719,633,0 chrX 552241 . A G 5186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.1062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.170;QD=22.65;ReadPosRankSum=1.717;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5186,594,0 chrX 552473 . T A 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=3.201;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.950;QD=23.33;ReadPosRankSum=1.676;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4340,492,0 chrX 552529 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.1514;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.27;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3942,456,0 chrX 552584 . A T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.67;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3814,417,0 chrX 552593 . T C 3693.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.60;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3693,414,0 chrX 552814 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=126;Dels=0.00;FS=2.814;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.384;QD=21.07;ReadPosRankSum=2.391;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2688,303,0 chrX 553360 . C A 1554 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.89;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1587,174,0 chrX 553376 . C A 1787 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=22.06;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1820,201,0 chrX 553392 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.68;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1637,183,0 chrX 553480 . C A 1699 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.24;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1732,195,0 chrX 553533 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.44;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2705,297,0 chrX 553545 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=22.26;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2482,276,0 chrX 553604 . T C 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;MQRankSum=-1.123;QD=14.38;ReadPosRankSum=2.396;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1342,153,0 chrX 553611 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=16.36;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1489,168,0 chrX 553617 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=16.37;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1555,174,0 chrX 553641 . T C 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.045;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9498;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=1.618;QD=15.98;ReadPosRankSum=-0.959;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1967,206,0 chrX 553769 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.01;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2870,315,0 chrX 553782 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.45;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2906,318,0 chrX 553828 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1010;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.74;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2954,333,0 chrX 553911 . G T 3188 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.29;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3221,360,0 chrX 554196 . A G 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=187;Dels=0.00;FS=2.563;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.865;QD=22.75;ReadPosRankSum=2.919;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4255,486,0 chrX 554517 . A T 2520 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2553,285,0 chrX 554739 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=159;Dels=0.00;FS=9.765;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.842;QD=23.34;ReadPosRankSum=2.419;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3711,420,0 chrX 554895 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=195;Dels=0.00;FS=4.726;HaplotypeScore=13.3159;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.081;QD=22.09;ReadPosRankSum=1.696;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4307,492,0 chrX 554957 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.87;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3431,375,0 chrX 554972 . G A 3065 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.43;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3098,345,0 chrX 554999 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.81;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2821,327,0 chrX 555162 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.32;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2734,300,0 chrX 555458 . G A 5034.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:5034,549,0 chrX 555723 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=189;Dels=0.00;FS=6.424;HaplotypeScore=12.4401;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.117;QD=22.97;ReadPosRankSum=2.319;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4341,492,0 chrX 556042 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.18;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4014,453,0 chrX 556240 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=3.454;HaplotypeScore=10.4178;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.881;QD=23.46;ReadPosRankSum=1.653;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4152,471,0 chrX 556720 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.18;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3569,405,0 chrX 556864 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.8945;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.36;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3855,441,0 chrX 557209 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.79;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4554,501,0 chrX 557221 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.26;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4210,462,0 chrX 557275 . C A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.38;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3799,429,0 chrX 557590 . A G 1632 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.66;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1665,189,0 chrX 557920 . G T 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.4041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=24.47;ReadPosRankSum=1.249;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4038,441,0 chrX 558226 . T C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=169;Dels=0.00;FS=9.831;HaplotypeScore=7.2919;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.708;QD=23.24;ReadPosRankSum=2.911;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3927,444,0 chrX 558253 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.36;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3846,435,0 chrX 558314 . T C 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.917;QD=21.96;ReadPosRankSum=1.691;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3733,423,0 chrX 558558 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=189;Dels=0.00;FS=2.496;HaplotypeScore=12.4984;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.422;QD=19.55;ReadPosRankSum=2.919;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:3,183:189:99:3694,420,0 chrX 558652 . A G 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.980;QD=19.86;ReadPosRankSum=1.625;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2595,306,0 chrX 558676 . T C 2750 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.52;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2783,318,0 chrX 558889 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=145;Dels=0.00;FS=2.939;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.418;QD=22.96;ReadPosRankSum=2.415;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3329,381,0 chrX 559033 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.190;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.124;QD=22.42;ReadPosRankSum=1.615;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3340,399,0 chrX 559588 . A G 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.2544;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.453;QD=22.20;ReadPosRankSum=1.613;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3908,438,0 chrX 559763 . A G 3704.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.45;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3704,435,0 chrX 559813 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.49;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3547,393,0 chrX 559883 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=157;Dels=0.00;FS=2.630;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.524;QD=22.50;ReadPosRankSum=2.418;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3532,399,0 chrX 559938 . G T 4372.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.63;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4372,489,0 chrX 560037 . T C 3791.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.91;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3791,423,0 chrX 560471 . G A 3920.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.8765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3920,438,0 chrX 560603 . T G 2466 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.49;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2499,282,0 chrX 560828 . A G 2847 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.3620;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.96;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2880,330,0 chrX 561055 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.64;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2955,339,0 chrX 561231 . T C 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.634;QD=24.27;ReadPosRankSum=1.704;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3018,345,0 chrX 561296 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3765,423,0 chrX 561590 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=138;Dels=0.00;FS=5.597;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.058;QD=21.54;ReadPosRankSum=2.905;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3005,333,0 chrX 562799 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.24;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3879,429,0 chrX 562979 . T G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=3.305;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.948;QD=21.92;ReadPosRankSum=1.656;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3036,345,0 chrX 563006 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.02;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2819,315,0 chrX 563766 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.93;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4475,489,0 chrX 563792 . A C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.426;QD=21.84;ReadPosRankSum=1.694;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3975,453,0 chrX 563819 . G T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.78;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4124,453,0 chrX 564333 . T G 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.604;QD=23.44;ReadPosRankSum=1.653;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4125,465,0 chrX 564414 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=150;Dels=0.00;FS=6.109;HaplotypeScore=10.5261;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.229;QD=23.77;ReadPosRankSum=2.367;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3565,402,0 chrX 564566 . G A 4977.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.26;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4977,546,0 chrX 564818 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=15.8713;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.63;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:3941,444,0 chrX 564851 . G A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.56;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4084,450,0 chrX 565262 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.554;QD=22.70;ReadPosRankSum=1.673;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3995,456,0 chrX 565364 . A G 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=145;Dels=0.00;FS=2.589;HaplotypeScore=7.0292;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.281;QD=18.65;ReadPosRankSum=2.415;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2737,309,0 chrX 565373 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=17.75;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2678,315,0 chrX 565457 . T C 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=191;Dels=0.00;FS=7.879;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.601;QD=23.19;ReadPosRankSum=2.398;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4430,498,0 chrX 565631 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=184;Dels=0.00;FS=3.001;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-2.102;QD=22.82;ReadPosRankSum=2.316;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4198,474,0 chrX 565667 . A C 3481.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.49;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3481,405,0 chrX 566045 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.75;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3389,378,0 chrX 566093 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.5736;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.36;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3377,372,0 chrX 566114 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.23;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3056,339,0 chrX 566519 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.2229;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.01;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4178,480,0 chrX 566594 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.18;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3813,420,0 chrX 566600 . G C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.88;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3339,390,0 chrX 566656 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.99;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3590,414,0 chrX 566822 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=16.24;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1901,210,0 chrX 566943 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.19;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1261,144,0 chrX 566962 . A T 1636 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.71;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1669,186,0 chrX 567157 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=139;Dels=0.00;FS=6.047;HaplotypeScore=8.8605;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.934;QD=23.74;ReadPosRankSum=2.935;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:3300,372,0 chrX 567193 . C T 4270.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.96;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4270,474,0 chrX 567252 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.35;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4273,471,0 chrX 567298 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=149;Dels=0.00;FS=3.650;HaplotypeScore=17.2563;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.708;QD=23.69;ReadPosRankSum=-0.403;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3530,387,0 chrX 567353 . C T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.98;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3671,405,0 chrX 567462 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3488,396,0 chrX 567525 . A G 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=202;Dels=0.00;FS=6.087;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.742;QD=21.38;ReadPosRankSum=2.945;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:3,196:202:99:4319,492,0 chrX 568041 . G A 4386.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.84;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4386,483,0 chrX 568363 . G A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.6620;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.27;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4573,498,0 chrX 568805 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2493,273,0 chrX 569963 . C T 4714.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.95;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4714,537,0 chrX 570422 . T C 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.4898;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.638;QD=19.58;ReadPosRankSum=0.792;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,220:226:99:4426,501,0 chrX 570648 . C G 1741 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.03;FS=0.000;HaplotypeScore=13.2367;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=18.52;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1774,204,0 chrX 570822 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.39;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1670,201,0 chrX 571276 . T C 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.097;DP=258;Dels=0.00;FS=16.891;HaplotypeScore=26.3910;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.271;QD=17.98;ReadPosRankSum=3.427;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:4,251:258:99:4638,528,0 chrX 571582 . A G 6914.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=21.4911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-4.035e+03 GT:AD:DP:GQ:PL 1/1:0,325:326:99:6914,786,0 chrX 571756 . G A 5197.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.1204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5197,597,0 chrX 571909 . G A 4497.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.7511;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.83;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4497,498,0 chrX 572041 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2572;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.30;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3568,390,0 chrX 572059 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.05;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3307,357,0 chrX 572441 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.926;QD=23.66;ReadPosRankSum=1.710;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3762,423,0 chrX 572786 . G T 7694.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=17.5139;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.41;SB=-4.271e+03 GT:AD:DP:GQ:PL 1/1:0,375:377:99:7694,885,0 chrX 572814 . G A 7930.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=18.1007;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.44;SB=-4.339e+03 GT:AD:DP:GQ:PL 1/1:0,380:388:99:7930,897,0 chrX 572936 . C T 6124.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=21.2055;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.28;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6124,690,0 chrX 572982 . T C 5407.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.25;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5407,606,0 chrX 573386 . A G 7019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=316;Dels=0.00;FS=3.294;HaplotypeScore=15.8722;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.296;QD=22.21;ReadPosRankSum=1.721;SB=-3.737e+03 GT:AD:DP:GQ:PL 1/1:1,315:316:99:7019,789,0 chrX 573648 . A G 4187.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.25;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4187,477,0 chrX 574073 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.77;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3661,399,0 chrX 574272 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.16;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2869,321,0 chrX 574412 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.59;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3659,408,0 chrX 574799 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.221;QD=22.24;ReadPosRankSum=1.709;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3358,384,0 chrX 574857 . A C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=200;Dels=0.00;FS=8.972;HaplotypeScore=13.7319;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.873;QD=21.31;ReadPosRankSum=3.372;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:4,195:200:99:4262,501,0 chrX 575375 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.9699;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.22;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1751,195,0 chrX 575485 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.12;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3072,339,0 chrX 575549 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1700;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.48;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2409,279,0 chrX 575842 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.34;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3895,426,0 chrX 576464 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=4.235;HaplotypeScore=9.0167;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.277;QD=21.27;ReadPosRankSum=1.673;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3722,423,0 chrX 576551 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.4589;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.71;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3068,351,0 chrX 576835 . C A 1417 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=55.8249;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=20.24;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1450,159,0 chrX 576915 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.41;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1189,135,0 chrX 576952 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.06;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1718,195,0 chrX 576987 . T G 1416 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.82;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1449,162,0 chrX 577001 . G A 1082 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=18.66;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1115,123,0 chrX 577019 . A C 380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.734;QD=16.52;ReadPosRankSum=1.583;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:48:413,48,0 chrX 577035 . T A 44.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=6.42;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:9:77,9,0 chrX 577306 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.99;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3623,402,0 chrX 577387 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=187;Dels=0.00;FS=4.075;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.450;QD=21.98;ReadPosRankSum=1.713;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,183:187:99:4110,468,0 chrX 577591 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.08;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3900,426,0 chrX 577732 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=18.9790;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.85;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3201,360,0 chrX 578278 . G A 5040.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=18.3421;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.12;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5040,552,0 chrX 578638 . C A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.57;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3386,387,0 chrX 578723 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.79;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2239,261,0 chrX 578943 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.47;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4014,447,0 chrX 579055 . G A 5420.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.3412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5420,594,0 chrX 579112 . A G 4900.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.8892;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.07;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4900,549,0 chrX 579487 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.8615;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.40;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3876,435,0 chrX 579671 . G A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.80;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4514,501,0 chrX 580104 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=7.246;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.767;QD=20.82;ReadPosRankSum=1.704;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2573,294,0 chrX 580110 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=7.246;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.852;QD=20.24;ReadPosRankSum=1.704;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2523,297,0 chrX 580229 . C T 832 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:99:865,99,0 chrX 580312 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.52;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1024,117,0 chrX 580504 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.8801;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.385;QD=23.28;ReadPosRankSum=2.324;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3655,417,0 chrX 580939 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.2190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.09;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2944,336,0 chrX 581143 . A T 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=3.197;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.713;QD=22.29;ReadPosRankSum=1.703;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2686,303,0 chrX 581745 . A G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.449;QD=16.84;ReadPosRankSum=1.689;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1414,162,0 chrX 581760 . T C 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.394;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.549;QD=17.00;ReadPosRankSum=1.648;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,81:86:99:1495,168,0 chrX 582187 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=3.017;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.204;QD=22.04;ReadPosRankSum=2.314;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3592,405,0 chrX 582214 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.15;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3750,426,0 chrX 582303 . G A 2455 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.98;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2488,282,0 chrX 582415 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=100.4908;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.72;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2360,255,0 chrX 582462 . A T 1823 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=78.7744;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=17.36;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1856,213,0 chrX 582510 . A T 1808 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.55;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1841,210,0 chrX 582558 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.91;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2141,234,0 chrX 582722 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.54;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2986,327,0 chrX 582845 . G T 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=3.388;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.217;QD=22.05;ReadPosRankSum=-0.024;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3208,360,0 chrX 583112 . A G 2219 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2252,261,0 chrX 583236 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.07;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2461,270,0 chrX 583430 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.97;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3471,399,0 chrX 583447 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.38;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3442,375,0 chrX 583675 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.729;QD=21.42;ReadPosRankSum=1.709;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3277,378,0 chrX 584125 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.45;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1881,204,0 chrX 584131 . T C 1590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=5.229;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.924;QD=17.67;ReadPosRankSum=1.655;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1623,195,0 chrX 584485 . C T 4244.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.98;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4244,474,0 chrX 584707 . T C 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=227;Dels=0.00;FS=9.223;HaplotypeScore=10.7441;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.693;QD=13.07;ReadPosRankSum=3.600;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:7,219:227:99:2999,331,0 chrX 584710 . C T 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.390;DP=224;Dels=0.00;FS=9.131;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.994;QD=14.08;ReadPosRankSum=3.288;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:4,218:224:99:3188,357,0 chrX 584812 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.12;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3970,456,0 chrX 584830 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.10;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3270,369,0 chrX 585070 . A T 424 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=16.96;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:51:457,51,0 chrX 585612 . A G 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.928;QD=18.51;ReadPosRankSum=1.701;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2106,240,0 chrX 586085 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.66;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2943,324,0 chrX 586588 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.83;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2762,309,0 chrX 586596 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.53;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2620,294,0 chrX 586827 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=24.8785;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.479;QD=21.50;ReadPosRankSum=2.293;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:3107,357,0 chrX 586934 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.61;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3130,342,0 chrX 587575 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.03;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4032,444,0 chrX 587592 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=6.973;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.051;QD=22.56;ReadPosRankSum=2.406;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3813,432,0 chrX 587671 . G T 4883.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.82;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4883,534,0 chrX 587843 . T C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.069;DP=158;Dels=0.00;FS=9.191;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.097;QD=19.28;ReadPosRankSum=3.236;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:4,153:158:99:3079,351,0 chrX 588023 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.11;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3978,453,0 chrX 588360 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=180;Dels=0.00;FS=3.024;HaplotypeScore=15.6810;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.750;QD=21.64;ReadPosRankSum=2.381;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3895,447,0 chrX 588502 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.1014;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.622;QD=21.05;ReadPosRankSum=1.658;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4020,462,0 chrX 588574 . C A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.55;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4217,468,0 chrX 588774 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.11;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2245,252,0 chrX 588782 . T C 2073 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.13;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2106,237,0 chrX 588893 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.85;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2935,324,0 chrX 588968 . C G 2484 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.00;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2517,288,0 chrX 589213 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.20;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2979,330,0 chrX 589288 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3807,411,0 chrX 589719 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3080,336,0 chrX 589855 . G A 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.106;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.511;QD=21.62;ReadPosRankSum=-1.511;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2087,208,0 chrX 589903 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=110;Dels=0.00;FS=11.122;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.880;QD=21.75;ReadPosRankSum=1.417;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:3,106:110:99:2425,285,0 chrX 589961 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.53;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2646,294,0 chrX 590030 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=119;Dels=0.00;FS=9.921;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.573;QD=23.46;ReadPosRankSum=2.408;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2825,324,0 chrX 590069 . T C 2059 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.80;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,95:99:99:2092,240,0 chrX 590113 . T G 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=4.314;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.262;QD=19.41;ReadPosRankSum=1.604;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1605,180,0 chrX 590177 . A G 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.415;QD=20.28;ReadPosRankSum=2.364;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1797,207,0 chrX 590474 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.69;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1644,180,0 chrX 590713 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.48;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3062,330,0 chrX 590944 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=176;Dels=0.00;FS=2.416;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.063;QD=23.25;ReadPosRankSum=2.914;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:4092,459,0 chrX 591060 . A G 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.126;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.369;QD=21.67;ReadPosRankSum=1.641;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4183,480,0 chrX 591128 . C G 4310.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.68;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4310,510,0 chrX 591544 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.02;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3614,393,0 chrX 591652 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.32;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3343,366,0 chrX 591656 . T A 3190 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.99;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3223,357,0 chrX 591766 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.16;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3844,423,0 chrX 591807 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.775;QD=22.71;ReadPosRankSum=1.709;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3452,387,0 chrX 591944 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.48;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4063,456,0 chrX 591972 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=162;Dels=0.00;FS=3.536;HaplotypeScore=6.5840;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.250;QD=22.88;ReadPosRankSum=1.644;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:3707,417,0 chrX 592000 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.38;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3357,384,0 chrX 592363 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3279,378,0 chrX 592549 . A T 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.407;DP=148;Dels=0.00;FS=11.266;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.361;QD=22.39;ReadPosRankSum=2.335;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:5,143:148:99:3313,343,0 chrX 592732 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.9074;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.10;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3327,390,0 chrX 592918 . G C 4127.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.19;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4127,468,0 chrX 593074 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=160;Dels=0.00;FS=9.115;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.255;QD=20.56;ReadPosRankSum=2.341;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3290,375,0 chrX 593365 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.40;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3635,399,0 chrX 593414 . C G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3612,402,0 chrX 593953 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.31;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4667,528,0 chrX 594030 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=22.40;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4615,507,0 chrX 594047 . G T 4501.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.43;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4501,492,0 chrX 594122 . G C 5284.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.78;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5284,594,0 chrX 594688 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1806,198,0 chrX 594795 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=2.754;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.746;QD=21.76;ReadPosRankSum=2.400;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2165,246,0 chrX 594901 . T C 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.550;QD=22.64;ReadPosRankSum=1.696;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2184,249,0 chrX 595037 . G A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.73;MQ0=0;QD=25.15;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4426,480,0 chrX 595337 . G A 4515.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.0223;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.92;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4515,501,0 chrX 595640 . G C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.71;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3438,399,0 chrX 595994 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.61;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3846,438,0 chrX 596003 . A C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.27;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3710,414,0 chrX 596023 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.92;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3646,402,0 chrX 596273 . C T 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.212;QD=23.51;ReadPosRankSum=0.918;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4702,519,0 chrX 596468 . G C 4899.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.97;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4899,561,0 chrX 596987 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.28;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4004,447,0 chrX 597435 . A T 5012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=223;Dels=0.00;FS=3.941;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.344;QD=22.48;ReadPosRankSum=1.685;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5012,552,0 chrX 597635 . T C 6520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.9359;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.925;QD=22.25;ReadPosRankSum=1.720;SB=-3.592e+03 GT:AD:DP:GQ:PL 1/1:1,291:293:99:6520,738,0 chrX 597989 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3994,456,0 chrX 598043 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.227;QD=20.97;ReadPosRankSum=1.708;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3073,360,0 chrX 598202 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3675,420,0 chrX 598360 . T A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.56;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4308,486,0 chrX 598414 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=3.362;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.218;QD=20.66;ReadPosRankSum=1.670;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3451,393,0 chrX 598472 . A C 3130 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.9670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3163,357,0 chrX 598821 . T A 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=18.6794;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.575;QD=24.31;ReadPosRankSum=1.665;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3744,411,0 chrX 598936 . G C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.36;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3823,447,0 chrX 598977 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.12;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3760,414,0 chrX 599034 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.7793;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.13;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3951,447,0 chrX 599163 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.62;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3448,381,0 chrX 599181 . T A 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-1.155;QD=21.99;ReadPosRankSum=1.689;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3563,393,0 chrX 599205 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.3372;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.88;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3836,432,0 chrX 599274 . C T 5428.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.34;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5428,597,0 chrX 599285 . A G 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=253;Dels=0.00;FS=5.329;HaplotypeScore=15.7143;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.257;QD=19.65;ReadPosRankSum=1.649;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,248:253:99:4972,561,0 chrX 599394 . T C 6570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=9.0207;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.593;QD=21.68;ReadPosRankSum=1.663;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:1,300:303:99:6570,759,0 chrX 599412 . C A 6407.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.50;SB=-3.203e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:6407,717,0 chrX 599776 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.0171;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.58;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3884,429,0 chrX 599973 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.15;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3765,423,0 chrX 600045 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.36;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3141,339,0 chrX 600173 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=3.206;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.035;QD=22.47;ReadPosRankSum=1.689;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3595,405,0 chrX 600233 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.07;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2863,321,0 chrX 600241 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.34;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2509,279,0 chrX 600288 . A T 2577 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.98;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2610,288,0 chrX 600305 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.528;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.062;QD=17.54;ReadPosRankSum=1.707;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2471,282,0 chrX 600311 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.59;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2689,297,0 chrX 600374 . G C 3041 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0084;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.88;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3074,348,0 chrX 600714 . T G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.36;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3824,438,0 chrX 600731 . C A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.48;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3318,378,0 chrX 600915 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=24.22;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3730,408,0 chrX 600963 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.99;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3034,330,0 chrX 600970 . A G 2843 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.34;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2876,330,0 chrX 601098 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.87;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2994,330,0 chrX 601100 . T C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=153;Dels=0.00;FS=7.022;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.380;QD=18.71;ReadPosRankSum=2.369;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:2895,327,0 chrX 601208 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=136;Dels=0.00;FS=7.185;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.456;QD=19.00;ReadPosRankSum=2.394;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:2,130:136:99:2617,297,0 chrX 602496 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2619,288,0 chrX 602831 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2876,315,0 chrX 603340 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7633;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.44;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3792,441,0 chrX 603396 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.30;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3578,393,0 chrX 603892 . G A 6143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=258;Dels=0.00;FS=4.925;HaplotypeScore=5.1654;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.564;QD=23.81;ReadPosRankSum=0.161;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:6143,681,0 chrX 604049 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.165;DP=178;Dels=0.00;FS=5.249;HaplotypeScore=12.3621;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.613;QD=21.12;ReadPosRankSum=3.391;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3760,441,0 chrX 604069 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.08;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3809,417,0 chrX 604227 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0854;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.67;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2426,261,0 chrX 604367 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=24.1378;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.82;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1494,162,0 chrX 604715 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.00;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2954,330,0 chrX 604758 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.34;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3231,360,0 chrX 604788 . G T 2964 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.96;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2997,327,0 chrX 604877 . T G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=133;Dels=0.00;FS=14.988;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.245;QD=22.68;ReadPosRankSum=3.340;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:4,129:133:99:3050,345,0 chrX 604903 . T A 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.391;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.045;QD=22.38;ReadPosRankSum=1.706;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2965,327,0 chrX 604929 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.72;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3168,354,0 chrX 605026 . G T 2821 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.31;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2854,312,0 chrX 605043 . T C 2618 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.19;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2651,306,0 chrX 605100 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=124;Dels=0.00;FS=3.226;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.754;QD=20.60;ReadPosRankSum=1.676;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2588,291,0 chrX 605353 . G C 3050 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.33;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3083,363,0 chrX 605589 . A G 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=137;Dels=0.00;FS=15.509;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.758;QD=19.54;ReadPosRankSum=2.857;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:2710,309,0 chrX 605591 . G C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.205;DP=140;Dels=0.00;FS=15.637;HaplotypeScore=6.0402;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.121;QD=19.25;ReadPosRankSum=2.557;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:4,134:140:99:2728,315,0 chrX 605998 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.281;QD=21.82;ReadPosRankSum=1.704;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2782,321,0 chrX 606285 . C A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.35;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3459,390,0 chrX 606300 . T A 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.197;QD=21.44;ReadPosRankSum=1.688;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3388,369,0 chrX 606367 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=189;Dels=0.00;FS=7.833;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;MQRankSum=1.111;QD=18.98;ReadPosRankSum=2.424;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3588,395,0 chrX 606382 . C A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=19.15;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3850,429,0 chrX 606409 . C G 2741 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=14.50;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:2774,332,0 chrX 606410 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=16.22;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3018,339,0 chrX 606423 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.112;DP=186;Dels=0.00;FS=20.521;HaplotypeScore=2.3885;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;MQRankSum=-2.424;QD=13.50;ReadPosRankSum=4.051;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:6,180:186:99:2544,291,0 chrX 606425 . C T 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.008;DP=189;Dels=0.00;FS=20.327;HaplotypeScore=2.3885;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;MQRankSum=-2.203;QD=13.28;ReadPosRankSum=3.690;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:6,183:189:99:2542,288,0 chrX 606447 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=14.12;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:2588,294,0 chrX 606584 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=22.09;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4131,497,0 chrX 606612 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=161;Dels=0.00;FS=10.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;MQRankSum=-2.669;QD=20.58;ReadPosRankSum=2.919;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3314,398,0 chrX 606614 . T G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.583;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;MQRankSum=-1.540;QD=20.48;ReadPosRankSum=1.689;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3317,401,0 chrX 606625 . C A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=19.22;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3441,401,0 chrX 606777 . C G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=3.597;HaplotypeScore=123.6658;MLEAC=2;MLEAF=1.00;MQ=32.90;MQ0=0;MQRankSum=-0.896;QD=14.19;ReadPosRankSum=-1.195;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2502,297,0 chrX 606787 . T A 1428 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=12.31;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1461,180,0 chrX 606788 . C A 1286 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.6696;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=10.72;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:1319,165,0 chrX 606789 . C A 1270 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=8.167;HaplotypeScore=4.5192;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;MQRankSum=-0.915;QD=10.76;ReadPosRankSum=2.408;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:1303,162,0 chrX 606791 . C T 1229 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=118;Dels=0.00;FS=2.522;HaplotypeScore=3.5527;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;MQRankSum=-1.966;QD=10.42;ReadPosRankSum=2.924;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:1262,161,0 chrX 606792 . T C 1229 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.280;DP=121;Dels=0.02;FS=2.530;HaplotypeScore=5.4896;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=-1.636;QD=10.16;ReadPosRankSum=2.907;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:1262,161,0 chrX 606958 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=21.16;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3343,372,0 chrX 606979 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=19.82;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2768,315,0 chrX 607024 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=20.89;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2769,303,0 chrX 607047 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=6.517;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-1.084;QD=19.55;ReadPosRankSum=1.707;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2750,321,0 chrX 607230 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=74.3483;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=22.49;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1922,210,0 chrX 607262 . T C 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.599;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=12.2171;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=0.933;QD=16.60;ReadPosRankSum=0.999;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:82:913,82,0 chrX 607271 . A G 937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.393;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.713;QD=18.37;ReadPosRankSum=0.577;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:85:970,85,0 chrX 607298 . G A 765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.333;QD=14.71;ReadPosRankSum=-1.599;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:70:798,70,0 chrX 607387 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.46;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1980,216,0 chrX 607391 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.80;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1937,210,0 chrX 607434 . A T 687 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=16.76;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:720,84,0 chrX 607442 . T C 455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=32;Dels=0.00;FS=3.332;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;MQRankSum=0.990;QD=14.22;ReadPosRankSum=1.609;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:1,27:32:57:488,57,0 chrX 607458 . G T 635 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.17;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:668,75,0 chrX 607508 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=21.07;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1466,168,0 chrX 607523 . G T 1623 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=20.29;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1656,186,0 chrX 607636 . G A 2545 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=24.24;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2578,285,0 chrX 607672 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.02;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2059,237,0 chrX 607746 . A G 1996 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=15.97;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2029,231,0 chrX 607750 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=16.26;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2212,246,0 chrX 607795 . A G 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=168;Dels=0.00;FS=9.268;HaplotypeScore=7.4884;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=1.329;QD=16.33;ReadPosRankSum=2.958;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:2776,324,0 chrX 607808 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=16.97;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2833,330,0 chrX 607839 . T C 2132 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=15.79;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2165,249,0 chrX 607843 . A G 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.523;DP=131;Dels=0.00;FS=11.215;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-1.005;QD=15.16;ReadPosRankSum=3.438;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:5,125:131:99:2019,231,0 chrX 608096 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2351;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.89;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2002,222,0 chrX 608110 . T G 1938 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.19;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1971,225,0 chrX 608158 . T C 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.512;QD=17.62;ReadPosRankSum=1.683;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1302,147,0 chrX 608184 . A T 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=3.779;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.281;QD=21.24;ReadPosRankSum=1.685;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1605,177,0 chrX 608281 . C A 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.577;QD=23.49;ReadPosRankSum=-0.990;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2993,330,0 chrX 608323 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.23;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2913,321,0 chrX 608367 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=14.1958;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.02;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2556,291,0 chrX 608407 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.066;QD=21.68;ReadPosRankSum=1.666;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2288,258,0 chrX 608420 . A G 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=4.342;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.699;QD=21.18;ReadPosRankSum=1.699;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2278,258,0 chrX 608501 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=16.92;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:1860,222,0 chrX 608521 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=17.13;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1815,198,0 chrX 608983 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.8121;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.00;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3289,372,0 chrX 609527 . C A 2447 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2480,285,0 chrX 610092 . T C 4288.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.43;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4288,483,0 chrX 610450 . T G 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=3.877;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.369;QD=20.91;ReadPosRankSum=1.695;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3932,465,0 chrX 610784 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.75;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1949,216,0 chrX 610792 . C A 1828 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.54;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1861,204,0 chrX 610863 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.26;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2435,267,0 chrX 611105 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.20;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3582,417,0 chrX 611152 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.06;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3943,429,0 chrX 611431 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=4.164;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.232;QD=20.61;ReadPosRankSum=1.694;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3710,432,0 chrX 611452 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=185;Dels=0.00;FS=2.831;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.274;QD=19.70;ReadPosRankSum=2.423;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3645,414,0 chrX 611484 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.6808;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.68;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4157,465,0 chrX 611521 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.34;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4200,465,0 chrX 611557 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.18;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4036,456,0 chrX 611653 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=161;Dels=0.00;FS=6.212;HaplotypeScore=12.7191;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.679;QD=20.08;ReadPosRankSum=2.343;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3268,381,0 chrX 611749 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.56;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3404,372,0 chrX 612053 . G T 2060 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.25;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2093,231,0 chrX 612054 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.32;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2042,228,0 chrX 612134 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=18.42;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2520,282,0 chrX 612176 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.8277;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=13.37;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1570,183,0 chrX 612184 . A C 1228 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6917;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=11.70;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1261,144,0 chrX 612199 . C T 979 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=10.09;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1012,111,0 chrX 612209 . T A 1053 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=10.97;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1086,123,0 chrX 612210 . A C 1053 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=10.97;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1086,123,0 chrX 612277 . C G 2094 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=21.81;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2127,243,0 chrX 612338 . A G 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-1.550;QD=18.95;ReadPosRankSum=1.671;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2212,249,0 chrX 612341 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=18.15;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2084,234,0 chrX 612397 . T A 2509 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=19.91;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2542,279,0 chrX 612549 . A G 2610 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.39;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2643,297,0 chrX 612558 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.52;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2680,294,0 chrX 612904 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4797;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.63;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2522,288,0 chrX 612937 . A T 1889 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.91;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1922,210,0 chrX 613020 . A T 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.827;QD=21.81;ReadPosRankSum=2.388;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1756,198,0 chrX 613050 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=61.4424;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.23;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1567,168,0 chrX 613103 . T G 733 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=11.0157;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=12.02;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:87:766,87,0 chrX 613133 . T C 552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5031;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;MQRankSum=-0.125;QD=7.89;ReadPosRankSum=0.089;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:72:585,72,0 chrX 613161 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5424;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=14.45;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1160,135,0 chrX 613192 . A G 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.1835;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.957;QD=19.93;ReadPosRankSum=0.274;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1548,177,0 chrX 613229 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.43;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1962,216,0 chrX 613234 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.73;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1945,219,0 chrX 613648 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=192;Dels=0.00;FS=5.597;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.660;QD=20.62;ReadPosRankSum=2.932;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3959,462,0 chrX 613662 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.96;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4194,459,0 chrX 613909 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.8018;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.43;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2562,297,0 chrX 614053 . G A 2683 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=22.17;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2716,306,0 chrX 614058 . A G 2553 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.158;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-0.115;QD=21.27;ReadPosRankSum=1.703;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2586,294,0 chrX 614062 . G A 2511 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=21.10;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2544,285,0 chrX 614089 . T C 2393 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.14;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2426,276,0 chrX 614123 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=158;Dels=0.00;FS=9.283;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.675;QD=20.75;ReadPosRankSum=2.930;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3278,366,0 chrX 614239 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.60;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3345,363,0 chrX 614320 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=174;Dels=0.00;FS=2.977;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.964;QD=23.10;ReadPosRankSum=2.421;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4019,456,0 chrX 614662 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.29;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2396,264,0 chrX 614663 . T C 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=112;Dels=0.00;FS=6.101;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.865;QD=20.81;ReadPosRankSum=2.937;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2364,270,0 chrX 614716 . A T 2797 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.74;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2830,324,0 chrX 614843 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.426;QD=20.99;ReadPosRankSum=1.705;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2825,318,0 chrX 614862 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.13;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3182,354,0 chrX 614889 . T C 3057 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.72;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3090,351,0 chrX 614931 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=134;Dels=0.00;FS=2.855;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.679;QD=19.29;ReadPosRankSum=2.413;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2618,297,0 chrX 615149 . G C 3055 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=20.64;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3088,348,0 chrX 615169 . C G 3378.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=21.52;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3378,390,0 chrX 615291 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=22.11;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3339,363,0 chrX 615313 . C A 2943 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=19.36;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2976,330,0 chrX 615340 . A C 2451 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;QD=17.51;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2484,282,0 chrX 615361 . C A 2073 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=0;QD=15.36;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2106,234,0 chrX 615368 . C T 1737 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=0;QD=13.57;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1770,198,0 chrX 615371 . G A 1760 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=0;QD=13.64;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1793,195,0 chrX 615389 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=14.44;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1722,192,0 chrX 615410 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=13.28;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1547,177,0 chrX 615442 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=16.24;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1771,192,0 chrX 615454 . T C 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=5.399;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.400;QD=16.58;ReadPosRankSum=1.666;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1757,198,0 chrX 615463 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=18.49;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2196,243,0 chrX 615498 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=21.95;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2864,312,0 chrX 615575 . T A 2877 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=23.58;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2910,321,0 chrX 615743 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.92;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3690,420,0 chrX 615792 . A G 2607 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.49;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2640,297,0 chrX 616115 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.99;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2263,255,0 chrX 616200 . G C 3068 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3101,351,0 chrX 616678 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4116,447,0 chrX 617134 . T C 4597.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.00;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4597,540,0 chrX 617155 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.8795;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.94;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4147,477,0 chrX 617185 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.43;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3678,408,0 chrX 617282 . C G 3866.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=21.48;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3866,447,0 chrX 617312 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=20.92;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3578,414,0 chrX 617313 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-0.213;QD=21.73;ReadPosRankSum=1.631;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3716,420,0 chrX 617336 . T G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=162;Dels=0.00;FS=9.278;HaplotypeScore=4.3778;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-1.888;QD=19.43;ReadPosRankSum=2.404;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3180,372,0 chrX 617528 . C A 1699 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=81.5288;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=18.07;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1732,201,0 chrX 617529 . T C 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.840;HaplotypeScore=84.2505;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;MQRankSum=0.038;QD=18.55;ReadPosRankSum=1.657;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1758,204,0 chrX 617671 . A T 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=107;Dels=0.00;FS=10.055;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.500;QD=22.09;ReadPosRankSum=2.878;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2397,264,0 chrX 617775 . T A 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.669;QD=23.74;ReadPosRankSum=2.408;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4225,474,0 chrX 617886 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.10;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3156,357,0 chrX 617903 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.46;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3020,330,0 chrX 618088 . T A 3157 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.7133;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.35;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3190,357,0 chrX 618094 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=8.6397;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.16;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3269,363,0 chrX 618157 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.97;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2909,339,0 chrX 618202 . T A 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;DP=163;Dels=0.00;FS=2.576;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.031;QD=23.62;ReadPosRankSum=2.809;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3850,420,0 chrX 618545 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.2317;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.92;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3288,372,0 chrX 618797 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.61;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4504,507,0 chrX 618902 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.65;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3670,429,0 chrX 619267 . T C 2677 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2710,303,0 chrX 619438 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.9791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2888,333,0 chrX 619528 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.39;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2541,279,0 chrX 619852 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=4.320;HaplotypeScore=10.6322;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.902;QD=21.71;ReadPosRankSum=1.661;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3202,363,0 chrX 619880 . A T 2784 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.27;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2817,306,0 chrX 620018 . T A 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=77;Dels=0.00;FS=7.173;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;MQRankSum=-1.105;QD=18.40;ReadPosRankSum=2.290;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1450,159,0 chrX 620052 . T C 1505 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=17.92;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1538,180,0 chrX 620054 . T C 1459 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=18.01;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1492,171,0 chrX 620064 . T C 1478 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=17.81;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1511,174,0 chrX 620116 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.01;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1594,174,0 chrX 620127 . G A 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.336;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=0.148;QD=18.90;ReadPosRankSum=-1.633;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1356,130,0 chrX 620141 . A T 1228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.698;QD=18.33;ReadPosRankSum=1.681;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1261,144,0 chrX 620255 . T A 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.279;QD=21.37;ReadPosRankSum=1.565;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1358,153,0 chrX 620267 . C A 1269 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.51;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1302,141,0 chrX 620371 . T C 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.2489;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=1.254;QD=19.87;ReadPosRankSum=2.296;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1305,150,0 chrX 620576 . T A 782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=12.1574;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.373;QD=12.82;ReadPosRankSum=2.137;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:3,57:61:96:815,96,0 chrX 620650 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=71.0625;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.16;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1706,195,0 chrX 620736 . T G 69.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.764;DP=99;Dels=0.00;FS=15.296;HaplotypeScore=72.1867;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=0;MQRankSum=-1.153;QD=0.70;ReadPosRankSum=-3.952;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:92,7:99:10:99,0,10 chrX 620870 . T A 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.481;QD=23.14;ReadPosRankSum=1.678;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4466,513,0 chrX 621191 . G A 4689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.2023;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.825;QD=24.42;ReadPosRankSum=0.045;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4689,492,0 chrX 621470 . G A 5814.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.0316;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.61;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:5814,669,0 chrX 621779 . A G 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=3.093;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.359;QD=21.49;ReadPosRankSum=1.716;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4555,525,0 chrX 621972 . T C 6132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.041;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=20.2182;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.327;QD=22.88;ReadPosRankSum=1.643;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:3,264:268:99:6132,666,0 chrX 622052 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=205;Dels=0.00;FS=3.458;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.221;QD=20.76;ReadPosRankSum=1.715;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4256,498,0 chrX 622163 . A G 5053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.4656;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.187;QD=21.50;ReadPosRankSum=1.673;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5053,585,0 chrX 622386 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.2131;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.35;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4313,477,0 chrX 622799 . A G 7650.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=16.9464;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.577;QD=20.90;ReadPosRankSum=1.704;SB=-4.022e+03 GT:AD:DP:GQ:PL 1/1:1,365:366:99:7650,879,0 chrX 622874 . G A 4542.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.7903;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.22;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4542,498,0 chrX 623040 . T C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.389;QD=20.56;ReadPosRankSum=1.652;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2706,306,0 chrX 623184 . C G 3032 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.83;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3065,360,0 chrX 623186 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.58;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3205,354,0 chrX 623290 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.14;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3464,384,0 chrX 623291 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3282;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.37;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3454,384,0 chrX 623961 . C T 6781.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=22.0594;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.96;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:6781,747,0 chrX 624405 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=5.330;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.448;QD=19.64;ReadPosRankSum=1.687;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4557,516,0 chrX 624474 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.11;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3378,369,0 chrX 625188 . T C 5102.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=20.33;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5102,594,0 chrX 625191 . G A 5330.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=2.4706;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.41;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:5330,585,0 chrX 625230 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=23.5338;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.03;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4016,447,0 chrX 625757 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.08;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4056,456,0 chrX 625768 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=4.131;HaplotypeScore=8.1824;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.475;QD=20.54;ReadPosRankSum=1.219;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3903,450,0 chrX 625848 . G A 4689.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.10;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4689,522,0 chrX 626304 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3329,378,0 chrX 626736 . A C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.50;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3313,375,0 chrX 626814 . A G 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.681;DP=123;Dels=0.00;FS=5.605;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.025;QD=19.95;ReadPosRankSum=2.894;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2487,282,0 chrX 626887 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.50;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2370,270,0 chrX 627134 . T C 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=94;Dels=0.00;FS=3.049;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.694;QD=19.30;ReadPosRankSum=2.397;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1847,210,0 chrX 627266 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.67;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1687,186,0 chrX 627282 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.03;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1575,174,0 chrX 627341 . T C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=110;Dels=0.00;FS=5.928;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.422;QD=20.52;ReadPosRankSum=2.936;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2290,264,0 chrX 627385 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=131;Dels=0.00;FS=6.677;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.554;QD=21.52;ReadPosRankSum=2.412;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2852,321,0 chrX 627813 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=24.68;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3307,363,0 chrX 627942 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.41;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2750,303,0 chrX 627948 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.17;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2759,312,0 chrX 628044 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.46;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2248,255,0 chrX 628048 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8171;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.65;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2257,246,0 chrX 628180 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.12;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2508,273,0 chrX 628564 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.465;QD=22.06;ReadPosRankSum=1.704;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2769,309,0 chrX 628891 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.13;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4628,525,0 chrX 628897 . A T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.85;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4587,513,0 chrX 629091 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=4.284;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.302;QD=21.94;ReadPosRankSum=1.713;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3905,444,0 chrX 629161 . A T 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=193;Dels=0.00;FS=2.907;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.928;QD=22.36;ReadPosRankSum=2.424;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4316,486,0 chrX 629316 . T G 2276 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.27;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2309,267,0 chrX 629422 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.22;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2075,234,0 chrX 629482 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=22.17;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1363,150,0 chrX 629495 . G A 1040 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=20.80;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1073,117,0 chrX 629557 . A G 903 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=16.12;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:936,105,0 chrX 629566 . A G 811 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=9.8350;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=13.30;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:844,102,0 chrX 629879 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=146;Dels=0.00;FS=10.454;HaplotypeScore=12.1710;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.573;QD=22.58;ReadPosRankSum=2.924;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3297,369,0 chrX 630221 . G A 5249.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.02;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5249,579,0 chrX 630494 . C T 5525.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.34;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5525,609,0 chrX 630959 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.28;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3383,378,0 chrX 631955 . C A 4811.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.9921;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.35;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4811,528,0 chrX 632414 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.7633;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.24;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4035,456,0 chrX 632927 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.706;QD=19.88;ReadPosRankSum=2.395;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2697,309,0 chrX 633213 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.14;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2254,255,0 chrX 633743 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.7112;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.674;QD=21.42;ReadPosRankSum=1.655;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3898,438,0 chrX 633794 . A G 5319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=240;Dels=0.00;FS=7.121;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.568;QD=22.16;ReadPosRankSum=2.398;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:5319,618,0 chrX 634421 . T C 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=4.832;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.563;QD=18.10;ReadPosRankSum=1.659;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2639,300,0 chrX 634423 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.01;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2698,300,0 chrX 634484 . G C 2969 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.20;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3002,339,0 chrX 634529 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=3.049;HaplotypeScore=9.3589;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.723;QD=20.60;ReadPosRankSum=2.403;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2196,252,0 chrX 634657 . G C 2450 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.90;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2483,282,0 chrX 634727 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.14;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2254,255,0 chrX 634896 . C T 2288 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.65;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2321,258,0 chrX 635390 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.89;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2757,303,0 chrX 635444 . C T 2352 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2385,261,0 chrX 635592 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.50;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1468,162,0 chrX 635779 . C T 41.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=5.25;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:74,9,0 chrX 636335 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2311,252,0 chrX 636485 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.5527;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.51;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4559,513,0 chrX 637007 . A G 980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.932;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=22.0359;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=1.225;QD=9.42;ReadPosRankSum=0.168;SB=-7.789e+02 GT:AD:DP:GQ:PL 1/1:10,90:103:99:1013,120,0 chrX 637009 . T G 1213 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=23.8140;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=11.34;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1246,144,0 chrX 637056 . T C 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=115;Dels=0.00;FS=2.714;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.939;QD=17.36;ReadPosRankSum=2.363;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2029,231,0 chrX 637418 . C T 6098.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.54;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:6098,672,0 chrX 637470 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.8337;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.99;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4387,486,0 chrX 637486 . A G 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.370;QD=20.90;ReadPosRankSum=1.715;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4305,486,0 chrX 637574 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.89;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4763,525,0 chrX 637657 . G A 4852.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.95;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4852,525,0 chrX 637665 . T C 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.209;DP=223;Dels=0.00;FS=9.013;HaplotypeScore=7.2295;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-1.127;QD=20.61;ReadPosRankSum=3.405;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:4,218:223:99:4597,519,0 chrX 637795 . A G 5469.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=20.2321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5469,647,0 chrX 637876 . T C 8730.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=374;Dels=0.00;FS=2.581;HaplotypeScore=18.7655;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.380;QD=23.34;ReadPosRankSum=2.410;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:2,369:374:99:8730,1013,0 chrX 637972 . T C 6583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=17.4594;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.094;QD=22.32;ReadPosRankSum=1.637;SB=-3.673e+03 GT:AD:DP:GQ:PL 1/1:1,292:295:99:6583,738,0 chrX 638343 . A G 5268.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.71;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5268,603,0 chrX 638472 . T C 6128.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=14.3339;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-3.295e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:6128,705,0 chrX 638604 . G A 4959.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.6539;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.34;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4959,552,0 chrX 638730 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=183;Dels=0.00;FS=6.189;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.128;QD=19.44;ReadPosRankSum=2.409;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3558,417,0 chrX 639041 . T C 4413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=6.220;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.474;QD=21.96;ReadPosRankSum=1.715;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4413,510,0 chrX 639061 . T A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=22.10;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4729,525,0 chrX 639113 . T G 425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.951;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-1.084;QD=2.41;ReadPosRankSum=-7.774;SB=-6.996e+00 GT:AD:DP:GQ:PL 1/1:146,26:176:54:458,54,0 chrX 639136 . G T 2549 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=1;QD=20.23;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2582,288,0 chrX 639220 . G T 166.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;DP=135;Dels=0.02;FS=159.120;HaplotypeScore=15.5917;MLEAC=1;MLEAF=0.500;MQ=50.55;MQ0=1;MQRankSum=-0.788;QD=1.23;ReadPosRankSum=-3.485;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,52:132:99:196,0,488 chrX 639221 . C T 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DP=134;Dels=0.02;FS=130.410;HaplotypeScore=16.5040;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=1;MQRankSum=-1.307;QD=1.27;ReadPosRankSum=-4.005;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,46:131:99:200,0,598 chrX 639226 . C T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;DP=123;Dels=0.00;FS=71.830;HaplotypeScore=20.0401;MLEAC=1;MLEAF=0.500;MQ=53.77;MQ0=0;MQRankSum=-2.311;QD=0.12;ReadPosRankSum=-5.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,28:123:44:44,0,862 chrX 639270 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.76;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2209,255,0 chrX 639288 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=18.98;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2406,261,0 chrX 639321 . A G 1365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=5.579;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;MQRankSum=0.990;QD=12.19;ReadPosRankSum=1.701;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1398,162,0 chrX 639332 . A G 1326 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=12.05;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1359,156,0 chrX 639333 . T G 1337 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=12.15;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1370,156,0 chrX 639365 . A C 1819 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=15.16;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1852,213,0 chrX 639440 . T A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9969;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=22.03;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3547,396,0 chrX 639500 . C G 2805 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.3576;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=19.21;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2838,333,0 chrX 639618 . A G 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=116;Dels=0.00;FS=5.450;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=2.272;QD=17.39;ReadPosRankSum=2.939;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:3,112:116:99:2050,234,0 chrX 639731 . T C 1373 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=106.7489;MLEAC=2;MLEAF=1.00;MQ=33.95;MQ0=0;QD=9.81;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1406,159,0 chrX 639775 . A T 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.162;DP=114;Dels=0.00;FS=14.110;HaplotypeScore=6.6429;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;MQRankSum=0.893;QD=13.48;ReadPosRankSum=3.380;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:4,109:114:99:1570,174,0 chrX 639826 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.047;QD=23.08;ReadPosRankSum=1.701;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2618,303,0 chrX 639986 . G C 1448 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=182.5036;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=14.78;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1481,174,0 chrX 640034 . T C 662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.610;DP=143;Dels=0.00;FS=11.989;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;MQRankSum=-2.940;QD=4.63;ReadPosRankSum=3.742;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:5,138:143:81:695,81,0 chrX 640108 . T C 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.962;DP=240;Dels=0.00;FS=9.899;HaplotypeScore=25.1038;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.162;QD=20.60;ReadPosRankSum=4.296;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:7,231:240:99:4945,564,0 chrX 640236 . A G 6405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=280;Dels=0.00;FS=8.997;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=1.320;QD=22.88;ReadPosRankSum=2.344;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:2,276:280:99:6405,729,0 chrX 640392 . C T 5642.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=17.9168;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.26;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,290:293:99:5642,618,0 chrX 640451 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.3179;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-0.883;QD=17.44;ReadPosRankSum=2.345;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,233:236:99:4115,465,0 chrX 640468 . C T 3805.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.38;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3805,417,0 chrX 640502 . G C 2692 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=15.84;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:2725,315,0 chrX 640506 . T C 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=6.729;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-1.441;QD=14.96;ReadPosRankSum=2.322;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:2636,309,0 chrX 640664 . C A 1932 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.71;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1965,222,0 chrX 640718 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.461;QD=23.53;ReadPosRankSum=2.409;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2857,318,0 chrX 640807 . G C 2261 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.5979;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.00;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,123:133:99:2294,261,0 chrX 640849 . G A 4896.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.00;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4896,534,0 chrX 640893 . T C 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.773;DP=237;Dels=0.00;FS=5.492;HaplotypeScore=15.6311;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.463;QD=22.11;ReadPosRankSum=0.203;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:2,234:237:99:5240,594,0 chrX 641019 . G A 7787.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=15.0945;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.64;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:7787,876,0 chrX 641050 . A G 8396.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=428;Dels=0.00;FS=7.602;HaplotypeScore=19.8393;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.420;QD=19.62;ReadPosRankSum=2.397;SB=-4.329e+03 GT:AD:DP:GQ:PL 1/1:2,422:428:99:8396,992,0 chrX 641256 . C T 7584.01 filter AC=2;AF=1.00;AN=2;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=32.3678;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.85;SB=-3.604e+03 GT:AD:DP:GQ:PL 1/1:0,381:382:99:7584,834,0 chrX 641346 . T C 6570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=331;Dels=0.00;FS=9.057;HaplotypeScore=27.6266;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.434;QD=19.85;ReadPosRankSum=2.420;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:2,329:331:99:6570,744,0 chrX 641571 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=201;Dels=0.00;FS=8.661;HaplotypeScore=19.3350;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.829;QD=20.25;ReadPosRankSum=2.425;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,195:201:99:4071,462,0 chrX 641631 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.15;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3667,426,0 chrX 641753 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=13.25;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1543,171,0 chrX 641754 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=12.88;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1489,171,0 chrX 641813 . T G 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=106;Dels=0.00;FS=2.879;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.949;QD=19.19;ReadPosRankSum=0.434;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2067,237,0 chrX 641931 . T C 1267 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=13.20;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1300,150,0 chrX 642317 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.29;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3043,357,0 chrX 642324 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.038;QD=20.33;ReadPosRankSum=2.416;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3042,348,0 chrX 642375 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.26;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2809,312,0 chrX 642510 . T C 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.014;QD=22.51;ReadPosRankSum=1.626;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3692,420,0 chrX 643441 . G C 3000 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3033,351,0 chrX 643548 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2542;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.15;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2883,318,0 chrX 643787 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=119;Dels=0.00;FS=6.086;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=1.551;QD=20.51;ReadPosRankSum=2.670;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2474,279,0 chrX 643789 . G A 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=118;Dels=0.00;FS=6.110;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.578;QD=21.28;ReadPosRankSum=2.802;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2544,282,0 chrX 644364 . A C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=189;Dels=0.00;FS=3.346;HaplotypeScore=13.9736;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.884;QD=21.88;ReadPosRankSum=1.677;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4136,471,0 chrX 644400 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.345;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.984;QD=21.93;ReadPosRankSum=1.689;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3553,414,0 chrX 644548 . T G 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=210;Dels=0.00;FS=6.255;HaplotypeScore=12.1859;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.967;QD=23.28;ReadPosRankSum=2.426;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:2,205:210:99:4888,552,0 chrX 644641 . G T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.30;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4617,498,0 chrX 644706 . A T 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.116;QD=22.83;ReadPosRankSum=1.694;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4110,459,0 chrX 644952 . A C 2897 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.36;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2930,339,0 chrX 645000 . A G 3079 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.64;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3112,360,0 chrX 645026 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.04;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3462,378,0 chrX 645177 . A G 3055 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.67;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3088,345,0 chrX 645361 . A T 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.010;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.181;QD=22.04;ReadPosRankSum=1.706;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2987,330,0 chrX 645479 . G C 4476.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.61;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4476,507,0 chrX 645498 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.131;DP=198;Dels=0.00;FS=3.578;HaplotypeScore=8.1591;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.689;QD=21.61;ReadPosRankSum=-1.502;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4279,452,0 chrX 645565 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.03;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2641,291,0 chrX 645845 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.47;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3336,363,0 chrX 645972 . G A 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.2970;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.643;QD=20.44;ReadPosRankSum=-0.725;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2445,270,0 chrX 646018 . A C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.784;QD=20.70;ReadPosRankSum=1.699;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2227,255,0 chrX 646155 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.67;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1396,156,0 chrX 646230 . G T 2028 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.29;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2061,228,0 chrX 646268 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.01;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1989,219,0 chrX 646356 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.21;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2551,282,0 chrX 646377 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.88;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2493,282,0 chrX 646464 . T A 2684 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2717,312,0 chrX 646496 . T C 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=135;Dels=0.00;FS=3.014;HaplotypeScore=15.1311;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.011;QD=22.35;ReadPosRankSum=2.413;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3050,357,0 chrX 646557 . T A 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=135;Dels=0.00;FS=6.250;HaplotypeScore=104.9208;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.064;QD=21.47;ReadPosRankSum=2.395;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2932,321,0 chrX 646873 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3189,348,0 chrX 646969 . T C 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=112;Dels=0.00;FS=12.240;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.482;QD=20.95;ReadPosRankSum=2.937;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:3,108:112:99:2379,270,0 chrX 647016 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.6875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3386,381,0 chrX 647136 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=139;Dels=0.01;FS=11.329;HaplotypeScore=28.5724;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.064;QD=24.39;ReadPosRankSum=2.395;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,133:137:99:3390,378,0 chrX 647196 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.38;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2153,243,0 chrX 648002 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.90;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3778,420,0 chrX 648026 . T A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.24;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3742,408,0 chrX 648251 . C A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.86;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3795,423,0 chrX 648431 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=6.497;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.567;QD=22.18;ReadPosRankSum=2.380;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3182,360,0 chrX 648461 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.30;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3228,363,0 chrX 648638 . T C 2657 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.2745;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.71;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2690,306,0 chrX 648980 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.20;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4196,483,0 chrX 649204 . A T 1663 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=18.69;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1696,186,0 chrX 649217 . A G 721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.859;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=30.4595;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-2.882;QD=8.79;ReadPosRankSum=2.273;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:13,69:82:87:754,87,0 chrX 649459 . G T 1639 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=21.01;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1672,186,0 chrX 649474 . T C 1231 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=14.15;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1264,147,0 chrX 649481 . A T 1322 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=14.06;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1355,150,0 chrX 649486 . T C 1294 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=13.20;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1327,156,0 chrX 649585 . G A 3891.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.3183;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.78;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3891,432,0 chrX 649659 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.84;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3730,423,0 chrX 649660 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=181;Dels=0.00;FS=6.025;HaplotypeScore=3.5429;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-1.197;QD=20.69;ReadPosRankSum=2.938;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:3,176:181:99:3744,420,0 chrX 649682 . T A 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=0.410;QD=18.81;ReadPosRankSum=1.695;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3499,402,0 chrX 649755 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=195;Dels=0.00;FS=3.488;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.343;QD=21.06;ReadPosRankSum=1.714;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4106,471,0 chrX 649976 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.13;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3695,417,0 chrX 650077 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=23.49;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3204,363,0 chrX 650265 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=3.458;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-1.143;QD=19.34;ReadPosRankSum=1.596;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3011,339,0 chrX 650270 . T C 3125 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=20.70;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3158,357,0 chrX 650297 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=18.46;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2267,249,0 chrX 650299 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=18.49;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2270,249,0 chrX 650350 . A G 1780 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.94;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1813,207,0 chrX 650585 . A G 2751 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.74;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2784,330,0 chrX 650625 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.59;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2769,300,0 chrX 650654 . C G 2167 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.35;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2200,249,0 chrX 650669 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=8.2859;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.03;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2557,276,0 chrX 650707 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.437;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.037;QD=20.77;ReadPosRankSum=1.707;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2941,330,0 chrX 650894 . A G 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=146;Dels=0.00;FS=2.931;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.636;QD=21.89;ReadPosRankSum=2.399;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3229,369,0 chrX 650906 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.60;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3390,390,0 chrX 650992 . A C 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.529;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.256;QD=22.64;ReadPosRankSum=1.667;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3622,414,0 chrX 651009 . A C 3107 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.14;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3140,366,0 chrX 651084 . T C 2903 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.44;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2936,333,0 chrX 651089 . T C 2784 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.03;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2817,324,0 chrX 651274 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.82;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2761,318,0 chrX 651313 . A G 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=115;Dels=0.00;FS=2.845;HaplotypeScore=3.9498;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.075;QD=20.00;ReadPosRankSum=2.407;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2333,264,0 chrX 651316 . G T 2158 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.17;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2191,243,0 chrX 651374 . G T 2206 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.42;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2239,246,0 chrX 651454 . A C 2106 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.65;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2139,240,0 chrX 652362 . T C 5257.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.9186;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.54;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5257,615,0 chrX 652783 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.17;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2097,234,0 chrX 652822 . G T 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.140;DP=94;Dels=0.00;FS=6.194;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.983;QD=19.53;ReadPosRankSum=1.349;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1869,172,0 chrX 652831 . C T 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.071;DP=100;Dels=0.00;FS=5.051;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.702;QD=20.36;ReadPosRankSum=0.086;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2069,193,0 chrX 653144 . A G 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=2.994;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.287;QD=21.90;ReadPosRankSum=2.371;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4117,474,0 chrX 653249 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.889;QD=22.43;ReadPosRankSum=1.592;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3365,378,0 chrX 653480 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3895,444,0 chrX 653566 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.96;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3395,393,0 chrX 653585 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=168;Dels=0.00;FS=6.257;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-1.090;QD=21.68;ReadPosRankSum=2.347;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3642,411,0 chrX 653755 . T C 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=3.449;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.362;QD=23.01;ReadPosRankSum=1.713;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4073,456,0 chrX 654221 . A G 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1297;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.116;QD=19.27;ReadPosRankSum=2.387;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:2,115:119:99:2326,264,0 chrX 654244 . C G 2352 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.28;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2385,267,0 chrX 654313 . T A 2365 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.75;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2398,261,0 chrX 654472 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.87;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1682,198,0 chrX 654502 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.36;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2023,222,0 chrX 654612 . A T 1656 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.82;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1689,192,0 chrX 654625 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.03;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1854,207,0 chrX 655074 . T C 3133 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.46;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3166,357,0 chrX 655282 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.209;QD=23.80;ReadPosRankSum=1.689;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3831,438,0 chrX 655382 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.82;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3360,387,0 chrX 655475 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.91;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3549,399,0 chrX 655558 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.09;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3822,429,0 chrX 655589 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6246;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.000;QD=20.11;ReadPosRankSum=1.711;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3318,381,0 chrX 655670 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.89;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3731,429,0 chrX 655865 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.5361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4283,471,0 chrX 656454 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3698,417,0 chrX 656567 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3031,330,0 chrX 656868 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=3.010;HaplotypeScore=14.5099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.168;QD=22.48;ReadPosRankSum=1.698;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4653,528,0 chrX 657010 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.90;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3720,420,0 chrX 657034 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.101;QD=20.13;ReadPosRankSum=1.692;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3482,402,0 chrX 657067 . C G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.99;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3262,372,0 chrX 657109 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.59;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3455,378,0 chrX 657256 . A G 2463 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.52;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2496,288,0 chrX 657265 . A C 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-0.235;QD=18.94;ReadPosRankSum=1.703;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2287,264,0 chrX 657270 . A G 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-0.998;QD=18.70;ReadPosRankSum=1.644;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2277,258,0 chrX 657406 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.69;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2826,312,0 chrX 657541 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.337;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.295;QD=22.62;ReadPosRankSum=1.659;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2205,258,0 chrX 658094 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.46;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4313,474,0 chrX 658862 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.07;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2218,252,0 chrX 659775 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.23;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3609,408,0 chrX 659931 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.70;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4100,444,0 chrX 660307 . T C 2783 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.63;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2816,324,0 chrX 660402 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.5583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3573,417,0 chrX 660487 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.83;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3425,390,0 chrX 660546 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.21;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4434,498,0 chrX 660664 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.328;QD=21.51;ReadPosRankSum=1.690;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3527,399,0 chrX 660786 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.20;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3411,375,0 chrX 661017 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=144;Dels=0.00;FS=3.038;HaplotypeScore=8.2409;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.372;QD=21.01;ReadPosRankSum=2.346;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3058,348,0 chrX 661171 . T C 4593.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.85;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4593,522,0 chrX 661503 . A C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.33;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4086,468,0 chrX 661546 . G C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.24;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3470,399,0 chrX 661626 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7772;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.42;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4005,447,0 chrX 661952 . C T 4854.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.96;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4854,534,0 chrX 662083 . A G 5106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=235;Dels=0.00;FS=6.499;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.257;QD=21.73;ReadPosRankSum=2.397;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:5106,585,0 chrX 662262 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.91;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4162,471,0 chrX 662277 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=193;Dels=0.00;FS=5.441;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.361;QD=20.64;ReadPosRankSum=2.932;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:3983,450,0 chrX 662983 . T G 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=2.844;HaplotypeScore=12.2227;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.110;QD=23.34;ReadPosRankSum=2.348;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3408,387,0 chrX 663013 . A C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.7577;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.27;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3679,435,0 chrX 663082 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=4.681;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=-1.533;QD=17.81;ReadPosRankSum=1.714;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3402,387,0 chrX 663083 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=191;Dels=0.00;FS=14.106;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=-1.350;QD=17.48;ReadPosRankSum=2.930;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:3,185:191:99:3338,378,0 chrX 663098 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=213;Dels=0.02;FS=4.941;HaplotypeScore=38.6187;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=-0.157;QD=16.40;ReadPosRankSum=1.699;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:3493,402,0 chrX 663261 . T G 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=212;Dels=0.00;FS=9.181;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.098;QD=17.76;ReadPosRankSum=2.415;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:3765,423,0 chrX 663281 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.72;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4298,468,0 chrX 663395 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.5781;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.37;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3377,378,0 chrX 663511 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=162;Dels=0.00;FS=7.161;HaplotypeScore=6.4036;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-2.063;QD=19.96;ReadPosRankSum=2.311;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,157:162:99:3266,384,0 chrX 663534 . A T 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.929;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.714;QD=20.82;ReadPosRankSum=2.359;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2865,318,0 chrX 663564 . A G 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=128;Dels=0.00;FS=9.181;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.103;QD=20.88;ReadPosRankSum=3.389;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:2706,306,0 chrX 663590 . A C 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.569;QD=21.42;ReadPosRankSum=1.653;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2839,327,0 chrX 663614 . A C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=2.699;HaplotypeScore=3.6478;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.252;QD=22.08;ReadPosRankSum=2.321;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2572,294,0 chrX 663684 . T A 2471 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.06;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2504,273,0 chrX 663706 . T C 2549 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.60;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2582,294,0 chrX 663794 . A G 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.194;QD=19.47;ReadPosRankSum=2.380;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1396,159,0 chrX 663968 . T A 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.338;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.680;QD=14.30;ReadPosRankSum=1.688;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1177,138,0 chrX 664236 . C T 5608.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.5223;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.56;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5608,627,0 chrX 664330 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.758;DP=204;Dels=0.00;FS=12.242;HaplotypeScore=16.6521;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.035;QD=20.30;ReadPosRankSum=3.743;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:5,199:204:99:4142,456,0 chrX 664449 . A G 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=210;Dels=0.00;FS=6.384;HaplotypeScore=15.7786;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.691;QD=19.79;ReadPosRankSum=2.426;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,206:210:99:4156,480,0 chrX 664516 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.7313;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.00;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4199,483,0 chrX 664541 . C G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.51;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,210:219:99:4054,471,0 chrX 664705 . G A 5312.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.7667;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.70;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5312,588,0 chrX 664815 . C T 5767.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=9.1741;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.16;SB=-3.321e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:5767,630,0 chrX 664824 . A G 5730.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.83;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:5730,651,0 chrX 664882 . C T 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=3.381;HaplotypeScore=9.9318;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.575;QD=19.79;ReadPosRankSum=1.512;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4353,477,0 chrX 665027 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=202;Dels=0.00;FS=5.628;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.629;QD=19.82;ReadPosRankSum=1.715;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4004,450,0 chrX 665076 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.39;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3077,336,0 chrX 665087 . T G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=149;Dels=0.00;FS=9.192;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.008;QD=20.14;ReadPosRankSum=2.416;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3034,348,0 chrX 665172 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=3.738;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.477;QD=20.72;ReadPosRankSum=1.686;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3121,354,0 chrX 665401 . A G 2741 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.65;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2774,309,0 chrX 665597 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.14;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2402,264,0 chrX 665643 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.72;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3045,336,0 chrX 665668 . C G 3127 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.85;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3160,369,0 chrX 665938 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.732;QD=21.24;ReadPosRankSum=1.630;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2921,327,0 chrX 666046 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8987;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.606;QD=22.25;ReadPosRankSum=1.689;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3560,408,0 chrX 666321 . A C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=176;Dels=0.00;FS=9.338;HaplotypeScore=9.5603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.529;QD=20.51;ReadPosRankSum=2.936;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:3,170:176:99:3609,420,0 chrX 666422 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.07;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3368,366,0 chrX 666622 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=141;Dels=0.00;FS=14.805;HaplotypeScore=5.9961;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.106;QD=20.27;ReadPosRankSum=3.396;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:2891,330,0 chrX 666637 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.68;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2835,318,0 chrX 666639 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.396;QD=17.97;ReadPosRankSum=2.159;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2765,315,0 chrX 666742 . T G 3669.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.82;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3669,414,0 chrX 667152 . C G 1619 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1021;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.61;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1652,189,0 chrX 667280 . T G 687 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=20.82;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:81:720,81,0 chrX 667389 . A T 2071 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2104,234,0 chrX 667452 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.20;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2074,228,0 chrX 667630 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3420,396,0 chrX 668010 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.66;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3857,441,0 chrX 668091 . G C 3529.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.06;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3529,399,0 chrX 668102 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.8395;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.51;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3571,411,0 chrX 668216 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.72;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3440,381,0 chrX 668331 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.4526;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=17.45;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2424,267,0 chrX 668393 . A G 2159 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.27;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2192,249,0 chrX 668612 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3747,420,0 chrX 668723 . A T 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.5148;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.560;QD=20.43;ReadPosRankSum=1.697;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4004,459,0 chrX 669185 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.85;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1475,162,0 chrX 669408 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.08;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2128,237,0 chrX 669427 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.23;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2034,231,0 chrX 669743 . A C 3118 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.07;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3151,357,0 chrX 669761 . A G 3188 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.05;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3221,363,0 chrX 670200 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.56;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2789,309,0 chrX 670398 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.30;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3611,408,0 chrX 670580 . T G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=185;Dels=0.00;FS=5.812;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.379;QD=22.16;ReadPosRankSum=2.863;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4099,480,0 chrX 670778 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.8844;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.59;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4180,465,0 chrX 670803 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=7.772;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.135;QD=20.37;ReadPosRankSum=2.393;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:3585,402,0 chrX 670831 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9357;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.26;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3487,381,0 chrX 671070 . G A 4263.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.04;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4263,465,0 chrX 671129 . T A 4883.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.3293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4883,540,0 chrX 671597 . C G 2653 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.69;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2686,306,0 chrX 671903 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3785,429,0 chrX 672140 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3657,393,0 chrX 672584 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.45;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3265,375,0 chrX 672728 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.29;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2387,267,0 chrX 672815 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.056;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.258;QD=19.57;ReadPosRankSum=1.696;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1892,213,0 chrX 672827 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.37;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1741,201,0 chrX 672859 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.97;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1475,165,0 chrX 672937 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.962;QD=23.87;ReadPosRankSum=1.700;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2635,297,0 chrX 672968 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.08;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2704,294,0 chrX 672973 . A G 2492 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.46;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2525,288,0 chrX 673554 . C T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.96;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4289,468,0 chrX 673602 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.21;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4348,480,0 chrX 673630 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.9952;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.24;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4391,477,0 chrX 673644 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.74;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3908,438,0 chrX 673646 . T A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.55;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4130,450,0 chrX 673954 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=163;Dels=0.00;FS=6.052;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.075;QD=22.84;ReadPosRankSum=2.957;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3723,420,0 chrX 674143 . G C 3500.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.01;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3500,399,0 chrX 674293 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=17.3285;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.38;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2688,297,0 chrX 674570 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2122,243,0 chrX 674716 . A G 3006 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.63;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3039,357,0 chrX 675076 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.094;QD=22.40;ReadPosRankSum=1.669;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2497,282,0 chrX 675286 . T A 2815 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7325;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.70;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2848,321,0 chrX 675399 . G T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.34;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3665,402,0 chrX 675477 . C T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.9480;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.20;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4848,531,0 chrX 675709 . G A 6104.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=17.2530;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.44;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:6104,690,0 chrX 675754 . C A 4808.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.42;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:4808,534,0 chrX 675820 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2701;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.55;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3586,396,0 chrX 675872 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=6.765;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.511;QD=21.43;ReadPosRankSum=2.330;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3558,411,0 chrX 675901 . T A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3334,372,0 chrX 676193 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.68;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3856,426,0 chrX 676242 . C T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.6919;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.19;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4548,510,0 chrX 676590 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.12;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3086,342,0 chrX 676905 . A G 4647.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.00;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4647,537,0 chrX 677087 . A G 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.090;QD=23.58;ReadPosRankSum=1.702;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2792,312,0 chrX 677297 . C T 1139 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1172,135,0 chrX 677385 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=16.82;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1463,168,0 chrX 677391 . T C 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=55.8340;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=-1.643;QD=14.87;ReadPosRankSum=1.688;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1223,138,0 chrX 677477 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.02;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2634,288,0 chrX 677552 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.72;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2639,300,0 chrX 677952 . T C 2753 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.65;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2786,315,0 chrX 677961 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5678;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=16.48;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2422,276,0 chrX 678059 . G T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9281;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.36;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3353,375,0 chrX 678323 . C A 4738.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.3738;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.81;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4738,516,0 chrX 678464 . T C 5346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=227;Dels=0.00;FS=6.719;HaplotypeScore=11.1825;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.579;QD=23.55;ReadPosRankSum=1.390;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5346,589,0 chrX 678527 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.66;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4509,501,0 chrX 678600 . C T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.64;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3826,429,0 chrX 678652 . T C 2400 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.17;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2433,279,0 chrX 678665 . C A 2159 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.56;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2192,243,0 chrX 679917 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4606,516,0 chrX 679959 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.5452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4245,483,0 chrX 680001 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4463,507,0 chrX 680298 . C T 5146.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.9195;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.08;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5146,570,0 chrX 681152 . T C 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.748;DP=217;Dels=0.00;FS=16.338;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.531;QD=20.92;ReadPosRankSum=4.725;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:8,209:217:99:4539,525,0 chrX 681561 . G T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.02;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3987,450,0 chrX 681587 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.18;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3612,402,0 chrX 681606 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.10;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3739,420,0 chrX 681747 . T C 3058 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.65;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3091,360,0 chrX 681843 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.81;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3596,396,0 chrX 681969 . G T 2988 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3021,336,0 chrX 682101 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2058,234,0 chrX 682202 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.31;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2643,291,0 chrX 682343 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.47;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2864,315,0 chrX 682390 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.28;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2840,312,0 chrX 682401 . C G 2858 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.01;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2891,330,0 chrX 682740 . T C 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.128;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.478;QD=20.97;ReadPosRankSum=1.686;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3179,363,0 chrX 682752 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=150;Dels=0.00;FS=6.471;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.041;QD=19.75;ReadPosRankSum=2.400;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2996,342,0 chrX 682784 . A T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.26;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3383,369,0 chrX 683353 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.07;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3507,393,0 chrX 683408 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.91;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3057,342,0 chrX 683446 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.42;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3326,375,0 chrX 683820 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.939;DP=137;Dels=0.00;FS=15.454;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.237;QD=21.77;ReadPosRankSum=4.013;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:6,131:137:99:3016,339,0 chrX 683969 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=21.15;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2486,270,0 chrX 683975 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=19.75;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2364,270,0 chrX 684045 . G T 1399 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=15.90;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1432,162,0 chrX 684046 . T A 1474 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=16.94;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1507,171,0 chrX 684047 . G A 1562 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=17.75;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1595,177,0 chrX 684065 . T A 1409 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=15.32;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1442,162,0 chrX 684078 . A C 1352 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=14.54;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1385,159,0 chrX 684288 . C G 2834 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=5.8286;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=23.04;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2867,321,0 chrX 684334 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.313;QD=21.99;ReadPosRankSum=1.684;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3243,363,0 chrX 684348 . A G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=142;Dels=0.00;FS=2.778;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=1.839;QD=21.33;ReadPosRankSum=2.345;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3062,351,0 chrX 684508 . C A 2457 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.31;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2490,279,0 chrX 684510 . G A 2419 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=20.16;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2452,273,0 chrX 684514 . C A 2427 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6936;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=18.81;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2460,270,0 chrX 684758 . G C 4145.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.28;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4145,468,0 chrX 684785 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.58;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4100,459,0 chrX 685154 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=3.964;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.125;QD=24.06;ReadPosRankSum=1.682;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3320,378,0 chrX 685208 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.42;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2768,303,0 chrX 685607 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.64;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2489,282,0 chrX 685862 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=2.923;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.052;QD=23.40;ReadPosRankSum=2.376;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3908,447,0 chrX 685982 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.49;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3383,387,0 chrX 686023 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.38;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3600,405,0 chrX 686102 . T C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=3.933;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.364;QD=21.32;ReadPosRankSum=1.683;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3061,348,0 chrX 686736 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.8179;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.679;QD=22.89;ReadPosRankSum=1.705;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3032,342,0 chrX 686894 . A C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.329;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.228;QD=21.59;ReadPosRankSum=1.705;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2818,301,0 chrX 686917 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0640;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.72;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3582,393,0 chrX 687329 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=6.009;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.629;QD=22.07;ReadPosRankSum=2.912;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3289,375,0 chrX 687612 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.77;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3198,354,0 chrX 688286 . A G 2146 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.66;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2179,252,0 chrX 688289 . T A 2119 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.75;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2152,246,0 chrX 688565 . C T 4649.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.25;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4649,522,0 chrX 689090 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1507;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3281,369,0 chrX 689222 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.37;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1692,183,0 chrX 689592 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.46;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2567,285,0 chrX 689796 . G A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.86;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4300,474,0 chrX 689967 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=172;Dels=0.00;FS=2.904;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.207;QD=21.99;ReadPosRankSum=2.392;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3783,429,0 chrX 690183 . A T 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.157;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.814;QD=24.32;ReadPosRankSum=1.709;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3672,408,0 chrX 690743 . G T 5281.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.91;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5281,600,0 chrX 690933 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=201;Dels=0.00;FS=9.329;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.764;QD=20.39;ReadPosRankSum=2.352;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4099,462,0 chrX 690963 . G T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.58;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4423,486,0 chrX 691035 . T A 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=210;Dels=0.00;FS=2.954;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.654;QD=23.62;ReadPosRankSum=2.414;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4960,549,0 chrX 691434 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.09;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2596,303,0 chrX 691772 . C T 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.057;QD=21.67;ReadPosRankSum=1.249;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2677,291,0 chrX 691788 . G C 2606 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.20;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2639,306,0 chrX 691911 . A C 2838 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.83;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2871,336,0 chrX 691989 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.46;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3301,378,0 chrX 692064 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0785;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=18.69;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3364,384,0 chrX 692082 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=3.754;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.148;QD=19.81;ReadPosRankSum=1.693;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3546,402,0 chrX 692310 . A G 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=3.500;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.853;QD=23.33;ReadPosRankSum=1.697;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4619,525,0 chrX 692358 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.78;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3872,441,0 chrX 692804 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.81;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3572,396,0 chrX 692865 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.0957;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3875,423,0 chrX 693120 . C T 4501.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.07;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4501,492,0 chrX 693187 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.38;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3530,399,0 chrX 693238 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.56;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3835,429,0 chrX 693257 . G A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.49;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3958,438,0 chrX 693760 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.47;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3249,357,0 chrX 693792 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.25;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3637,396,0 chrX 693951 . T C 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.709;QD=23.88;ReadPosRankSum=1.627;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3185,363,0 chrX 694022 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.810;QD=21.56;ReadPosRankSum=1.710;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3321,375,0 chrX 694041 . T C 2848 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.06;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2881,336,0 chrX 694254 . A G 2927 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.84;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2960,345,0 chrX 694296 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=137;Dels=0.00;FS=12.367;HaplotypeScore=13.0068;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.275;QD=21.86;ReadPosRankSum=3.330;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:3028,339,0 chrX 694428 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.09;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3092,342,0 chrX 694713 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.7411;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.18;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3121,342,0 chrX 694743 . A C 3120 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7592;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.75;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3153,354,0 chrX 695217 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.39;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3257,360,0 chrX 695523 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.88;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2756,303,0 chrX 695701 . A T 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=171;Dels=0.00;FS=5.254;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-1.631;QD=20.27;ReadPosRankSum=1.611;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3466,384,0 chrX 695712 . G C 2855 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.1953;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.07;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2888,324,0 chrX 695857 . A G 5497.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.26;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5497,636,0 chrX 695968 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.11;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4290,489,0 chrX 695983 . G C 4228.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.91;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4228,486,0 chrX 696080 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1700;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.34;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4187,468,0 chrX 696286 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.49;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2410,273,0 chrX 697206 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2984,324,0 chrX 697486 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.79;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3669,423,0 chrX 697654 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=18.9509;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.51;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3405,375,0 chrX 697926 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.15;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3472,381,0 chrX 697940 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.94;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3648,396,0 chrX 698028 . A T 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=3.502;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.897;QD=22.83;ReadPosRankSum=1.670;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2590,291,0 chrX 698125 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.40;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2630,288,0 chrX 698245 . T A 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=128;Dels=0.00;FS=5.808;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-0.315;QD=19.41;ReadPosRankSum=2.945;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2517,279,0 chrX 698246 . A T 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.363;QD=19.47;ReadPosRankSum=1.571;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2544,279,0 chrX 698280 . A G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=4.508;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-0.337;QD=17.52;ReadPosRankSum=1.684;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2556,288,0 chrX 698283 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=17.88;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2625,288,0 chrX 698785 . A G 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.092;QD=22.02;ReadPosRankSum=1.666;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4668,537,0 chrX 698908 . A G 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.701;QD=19.48;ReadPosRankSum=1.681;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:3994,450,0 chrX 698917 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.63;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3867,426,0 chrX 699021 . T C 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.500;QD=22.77;ReadPosRankSum=1.696;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4440,501,0 chrX 699058 . A T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.76;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4052,444,0 chrX 699108 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.388;QD=21.87;ReadPosRankSum=1.711;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3631,411,0 chrX 699217 . A G 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=20.3107;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.082;QD=21.17;ReadPosRankSum=1.716;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:1,211:216:99:4573,519,0 chrX 699340 . G A 8362.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=20.6878;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.38;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,343:343:99:8362,913,0 chrX 699469 . G A 6251.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.25;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6251,714,0 chrX 699851 . G A 6085.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.96;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6085,666,0 chrX 700600 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.62;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3687,417,0 chrX 700674 . A G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.756;QD=22.32;ReadPosRankSum=1.708;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3225,360,0 chrX 700864 . T A 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.808;QD=21.90;ReadPosRankSum=1.629;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2989,327,0 chrX 701241 . T A 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.0682;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.357;QD=19.69;ReadPosRankSum=1.679;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3819,420,0 chrX 701478 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.880;QD=21.89;ReadPosRankSum=-1.134;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4202,455,0 chrX 701586 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7396;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.50;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3488,402,0 chrX 701827 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.61;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1675,183,0 chrX 701892 . A G 1210 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.17;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1243,147,0 chrX 701906 . T C 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.136;DP=67;Dels=0.00;FS=19.373;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;MQRankSum=-1.283;QD=18.22;ReadPosRankSum=3.321;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:4,63:67:99:1254,144,0 chrX 701912 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=19.33;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1367,153,0 chrX 701944 . C G 1623 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=17.84;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1656,189,0 chrX 702141 . A G 5122.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.2245;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=1;QD=22.76;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,221:225:99:5122,605,0 chrX 702597 . C A 7693.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=17.0397;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.67;SB=-3.495e+03 GT:AD:DP:GQ:PL 1/1:0,354:355:99:7693,873,0 chrX 702874 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.61;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2383,267,0 chrX 702981 . G A 400 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=12.90;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:51:433,51,0 chrX 702986 . C T 374 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=12.47;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:45:407,45,0 chrX 702987 . A C 332 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=11.07;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:42:365,42,0 chrX 703302 . G A 986 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1019,111,0 chrX 703339 . A G 1059 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1092,129,0 chrX 703571 . T A 6288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.5453;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.496;QD=24.66;ReadPosRankSum=2.430;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:6288,705,0 chrX 703802 . C G 6453.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=20.5443;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.80;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6453,720,0 chrX 703814 . C T 6306.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.01;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:6306,687,0 chrX 703858 . G A 4637.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.9255;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.87;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4637,513,0 chrX 703893 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.16;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3501,393,0 chrX 704066 . T C 5346.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.8087;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.24;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5346,603,0 chrX 704281 . T C 5071.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.1256;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.70;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5071,579,0 chrX 704310 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.1054;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.195;QD=19.14;ReadPosRankSum=1.120;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:4479,492,0 chrX 704425 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.14;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3467,390,0 chrX 704426 . C A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=22.37;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3624,399,0 chrX 704535 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=17.47;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2269,252,0 chrX 704627 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4340;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.39;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,145:150:99:3092,342,0 chrX 704699 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.65;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3443,393,0 chrX 704768 . C G 3098 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.22;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3131,363,0 chrX 704987 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.48;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3911,438,0 chrX 704998 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.03;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3768,414,0 chrX 705014 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=17.80;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3347,381,0 chrX 705450 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2695,297,0 chrX 705542 . A G 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.528;DP=123;Dels=0.00;FS=1.861;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.120;QD=18.80;ReadPosRankSum=3.400;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:5,118:123:99:2345,264,0 chrX 705639 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.21;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2210,240,0 chrX 705848 . G C 2476 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.16;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2509,288,0 chrX 705865 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.45;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2757,309,0 chrX 705917 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=3.001;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-1.221;QD=18.18;ReadPosRankSum=2.417;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2760,318,0 chrX 705920 . T C 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.442;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=0.117;QD=18.12;ReadPosRankSum=1.709;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2715,306,0 chrX 706135 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.50;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2841,327,0 chrX 706145 . T C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=141;Dels=0.00;FS=5.850;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-0.835;QD=19.21;ReadPosRankSum=2.907;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:2742,315,0 chrX 706322 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.73;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4023,453,0 chrX 706397 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=3.390;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.732;QD=19.82;ReadPosRankSum=1.674;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3567,399,0 chrX 706457 . C G 4616.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.41;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4616,531,0 chrX 707018 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.59;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2428,279,0 chrX 707260 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.0411;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.94;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2595,288,0 chrX 707488 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=109;Dels=0.00;FS=2.838;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.308;QD=23.51;ReadPosRankSum=2.381;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2596,294,0 chrX 707627 . A T 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.107;QD=21.90;ReadPosRankSum=1.675;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2705,300,0 chrX 707639 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.68;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2639,291,0 chrX 707659 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.57;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2538,282,0 chrX 707903 . A T 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=2.988;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.453;QD=21.08;ReadPosRankSum=2.394;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2837,318,0 chrX 707913 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.72;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2975,321,0 chrX 708177 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.20;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3086,336,0 chrX 708302 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=18.81;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1613,189,0 chrX 708320 . A C 1592 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=18.95;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1625,189,0 chrX 708329 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=18.51;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1458,165,0 chrX 708347 . C G 1212 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=17.31;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1245,144,0 chrX 708349 . C G 1270 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=17.89;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1303,147,0 chrX 708426 . A T 1380 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.62;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1413,153,0 chrX 708500 . C A 748 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=15.58;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:781,93,0 chrX 708504 . G T 778 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=3.203;HaplotypeScore=35.7608;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;MQRankSum=1.356;QD=16.91;ReadPosRankSum=0.377;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:93:811,93,0 chrX 708506 . A G 747 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=36.7273;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=15.89;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:780,90,0 chrX 708569 . A G 337 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;QD=18.72;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:42:370,42,0 chrX 708604 . T C 305 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=16.05;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:338,39,0 chrX 708607 . C T 324 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=14.73;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:39:357,39,0 chrX 708614 . G A 446 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=19.39;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:54:479,54,0 chrX 708644 . G A 732 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.85;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:87:765,87,0 chrX 708695 . A G 523 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=17.43;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:63:556,63,0 chrX 708696 . A G 482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=0.553;QD=16.07;ReadPosRankSum=2.765;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:3,27:30:60:515,60,0 chrX 708844 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7131;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.92;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3373,402,0 chrX 708931 . A G 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=7.563;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.839;QD=23.09;ReadPosRankSum=1.696;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2273,267,0 chrX 708946 . T C 2479 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=23.39;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2512,282,0 chrX 708970 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.09;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2544,294,0 chrX 709141 . G A 102.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.147;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=46.71;MQ0=0;MQRankSum=-6.278;QD=0.49;ReadPosRankSum=-8.074;SB=-5.240e+02 GT:AD:DP:GQ:PL 0/1:140,67:207:99:132,0,2202 chrX 709145 . G T 146.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.749;DP=202;Dels=0.00;FS=1.142;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=46.19;MQ0=0;MQRankSum=-5.965;QD=0.72;ReadPosRankSum=-7.207;SB=-5.850e+02 GT:AD:DP:GQ:PL 0/1:131,70:202:99:176,0,2012 chrX 709147 . A G 1949.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=46.26;MQ0=0;MQRankSum=2.764;QD=9.60;ReadPosRankSum=6.237;SB=-1.308e+03 GT:AD:DP:GQ:PL 0/1:74,129:203:99:1979,0,232 chrX 709148 . A G 229.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.733;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=46.04;MQ0=0;MQRankSum=-3.998;QD=1.13;ReadPosRankSum=-5.565;SB=-6.620e+02 GT:AD:DP:GQ:PL 0/1:127,75:202:99:259,0,2055 chrX 709153 . G A 392.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.262;DP=208;Dels=0.00;FS=1.088;HaplotypeScore=9.7128;MLEAC=1;MLEAF=0.500;MQ=46.36;MQ0=0;MQRankSum=-4.486;QD=1.88;ReadPosRankSum=-3.152;SB=-7.690e+02 GT:AD:DP:GQ:PL 0/1:122,86:208:99:422,0,1788 chrX 709185 . T C 184.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;DP=182;Dels=0.00;FS=9.822;HaplotypeScore=9.4964;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=0;MQRankSum=-5.540;QD=1.01;ReadPosRankSum=-4.260;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:142,39:182:99:214,0,1882 chrX 709186 . G A 189.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.810;DP=182;Dels=0.00;FS=9.850;HaplotypeScore=6.3964;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=0;MQRankSum=-5.620;QD=1.04;ReadPosRankSum=-4.602;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:143,39:182:99:219,0,1853 chrX 709188 . T A 184.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.437;DP=182;Dels=0.00;FS=8.405;HaplotypeScore=5.5095;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=0;MQRankSum=-6.611;QD=1.01;ReadPosRankSum=-4.741;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:145,37:182:99:214,0,1966 chrX 709189 . G A 180.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.786;DP=182;Dels=0.00;FS=8.405;HaplotypeScore=5.5095;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=0;MQRankSum=-5.534;QD=0.99;ReadPosRankSum=-5.387;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:145,37:182:99:210,0,1872 chrX 709193 . G T 157.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.146;DP=187;Dels=0.00;FS=8.251;HaplotypeScore=5.9104;MLEAC=1;MLEAF=0.500;MQ=47.29;MQ0=0;MQRankSum=-5.139;QD=0.84;ReadPosRankSum=-6.692;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:148,39:187:99:187,0,2045 chrX 709326 . C A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.6509;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=23.04;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4262,468,0 chrX 709369 . C T 4231.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.81;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4231,471,0 chrX 709740 . T A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.21;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3551,396,0 chrX 709864 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.05;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3656,402,0 chrX 710013 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.6277;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.38;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,151:156:99:3491,408,0 chrX 710385 . A C 2789 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2822,327,0 chrX 710892 . C G 3407.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.18;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3407,390,0 chrX 710983 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=174;Dels=0.00;FS=7.846;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.379;QD=22.86;ReadPosRankSum=2.421;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3978,462,0 chrX 711083 . A T 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.678;QD=22.22;ReadPosRankSum=1.624;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4288,471,0 chrX 711174 . G T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.5930;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.02;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4719,528,0 chrX 711200 . T C 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.546;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.852;QD=22.66;ReadPosRankSum=1.694;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:4146,480,0 chrX 711237 . G T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.96;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3421,393,0 chrX 711284 . G A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.67;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4096,441,0 chrX 711316 . A T 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.617;QD=24.05;ReadPosRankSum=1.672;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4184,462,0 chrX 711399 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.43;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2892,324,0 chrX 711565 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.32;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2578,282,0 chrX 711577 . A G 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=3.181;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-1.166;QD=20.65;ReadPosRankSum=1.699;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2181,246,0 chrX 711580 . C A 2079 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.58;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2112,237,0 chrX 711713 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=122;Dels=0.00;FS=3.032;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.132;QD=22.35;ReadPosRankSum=2.409;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2760,312,0 chrX 711724 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.15;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2514,282,0 chrX 711818 . A T 1369 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.84;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1402,159,0 chrX 711879 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.10;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1784,198,0 chrX 711984 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.64;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1349,147,0 chrX 712026 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.06;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1477,168,0 chrX 712034 . T C 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.053;QD=18.93;ReadPosRankSum=2.380;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1358,156,0 chrX 712319 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.85;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3434,390,0 chrX 712375 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.52;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3218,369,0 chrX 712403 . G T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.12;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3606,399,0 chrX 712489 . A T 4887.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.72;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4887,546,0 chrX 712580 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.2998;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=17.38;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:3562,405,0 chrX 712640 . C G 4250.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=18.16;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4250,480,0 chrX 712726 . G A 5053.01 filter AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.0376;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=5;QD=21.69;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5053,561,0 chrX 712728 . C T 4989.01 filter AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.2489;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=5;QD=21.79;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4989,558,0 chrX 712774 . T G 1609 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=12;QD=11.10;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:1642,183,0 chrX 712830 . A G 1983 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=157;Dels=0.00;FS=2.575;HaplotypeScore=11.5029;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=10;MQRankSum=-1.490;QD=12.63;ReadPosRankSum=2.883;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:3,153:157:99:2016,228,0 chrX 712927 . A G 1888.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.211;DP=154;Dels=0.00;FS=61.397;HaplotypeScore=5.8485;MLEAC=1;MLEAF=0.500;MQ=32.68;MQ0=6;MQRankSum=-1.178;QD=12.26;ReadPosRankSum=1.154;SB=-1.154e+03 GT:AD:DP:GQ:PL 0/1:33,121:154:99:1918,0,309 chrX 712951 . T A 1098.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.073;DP=116;Dels=0.00;FS=14.534;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=32.72;MQ0=6;MQRankSum=-0.792;QD=9.47;ReadPosRankSum=4.993;SB=-7.150e+02 GT:AD:DP:GQ:PL 0/1:27,89:116:98:1128,0,98 chrX 712965 . A T 1085 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=14;QD=11.30;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1118,126,0 chrX 712983 . C T 888 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=14;QD=8.22;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:921,105,0 chrX 712995 . T C 1095 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=15;MQRankSum=-1.518;QD=9.78;ReadPosRankSum=1.696;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1128,129,0 chrX 713263 . T C 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.195;DP=259;Dels=0.00;FS=26.997;HaplotypeScore=22.1638;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=4.987;QD=19.57;ReadPosRankSum=5.502;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:17,241:259:99:5069,403,0 chrX 713362 . G A 4703.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.29;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4703,534,0 chrX 713502 . A G 4814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=235;Dels=0.00;FS=2.857;HaplotypeScore=7.4128;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.008;QD=20.49;ReadPosRankSum=2.408;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:4814,537,0 chrX 713510 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=234;Dels=0.00;FS=5.700;HaplotypeScore=4.4359;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.788;QD=18.81;ReadPosRankSum=2.701;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:3,229:233:99:4401,501,0 chrX 713519 . A G 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.5979;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.747;QD=18.93;ReadPosRankSum=1.686;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:4296,489,0 chrX 713591 . G A 4653.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.3276;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.54;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4653,525,0 chrX 713874 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.68;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3652,417,0 chrX 714056 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=206;Dels=0.00;FS=3.896;HaplotypeScore=10.1556;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;MQRankSum=-0.420;QD=19.73;ReadPosRankSum=1.715;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4065,456,0 chrX 714187 . T C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.538;DP=154;Dels=0.00;FS=72.862;HaplotypeScore=5.6494;MLEAC=1;MLEAF=0.500;MQ=38.79;MQ0=0;MQRankSum=-3.706;QD=0.19;ReadPosRankSum=-3.759;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,21:154:60:60,0,2632 chrX 714203 . A G 1549.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300;DP=122;Dels=0.00;FS=65.018;HaplotypeScore=9.6683;MLEAC=1;MLEAF=0.500;MQ=38.54;MQ0=0;MQRankSum=1.338;QD=12.70;ReadPosRankSum=3.495;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:25,97:122:99:1579,0,270 chrX 714208 . A G 252.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DP=94;Dels=0.00;FS=35.044;HaplotypeScore=5.7462;MLEAC=1;MLEAF=0.500;MQ=37.50;MQ0=0;MQRankSum=-1.035;QD=2.68;ReadPosRankSum=-6.209;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,21:94:99:282,0,1048 chrX 714218 . A G 822.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DP=59;Dels=0.00;FS=8.073;HaplotypeScore=4.1946;MLEAC=1;MLEAF=0.500;MQ=37.33;MQ0=0;MQRankSum=-2.327;QD=13.93;ReadPosRankSum=2.381;SB=-4.540e+02 GT:AD:DP:GQ:PL 0/1:5,54:59:24:852,0,24 chrX 714240 . A C 642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;MQRankSum=-1.646;QD=16.05;ReadPosRankSum=1.646;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:78:675,78,0 chrX 714247 . G T 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;DP=47;Dels=0.00;FS=4.884;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=1;MQRankSum=3.753;QD=1.89;ReadPosRankSum=4.217;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,9:47:99:119,0,477 chrX 714259 . T C 166.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.158;DP=54;Dels=0.00;FS=11.569;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.98;MQ0=1;MQRankSum=-0.083;QD=3.07;ReadPosRankSum=0.676;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:31,22:54:99:196,0,267 chrX 714275 . A G 244.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=1;MQRankSum=-1.965;QD=4.78;ReadPosRankSum=5.168;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,39:51:99:274,0,163 chrX 714280 . A G 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.056;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=1;MQRankSum=2.741;QD=2.28;ReadPosRankSum=-4.602;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,10:50:99:144,0,269 chrX 714312 . A C 122.13 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=17.04;MQ0=0;QD=3.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:34:18:155,18,0 chrX 714331 . T C 74.51 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.73;MQ0=0;QD=2.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:12:107,12,0 chrX 714434 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=12.88;MQ0=0;MQRankSum=-0.839;QD=0.45;ReadPosRankSum=-0.503;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,30:31:6:45,6,0 chrX 714456 . A C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.59;MQ0=0;QD=0.38;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,37:37:6:45,6,0 chrX 714463 . G T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.59;MQ0=0;QD=0.38;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,37:37:6:45,6,0 chrX 714491 . A G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.82;MQ0=0;QD=0.39;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,36:36:6:45,6,0 chrX 714535 . G T 106.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=5.90;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:139,18,0 chrX 714563 . A G 1402 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;QD=19.75;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1435,165,0 chrX 714764 . G T 2936 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=32.1753;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=17.90;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2969,345,0 chrX 714865 . C A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.207;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=24.4868;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=0;MQRankSum=2.008;QD=0.09;ReadPosRankSum=-2.468;SB=-6.006e+00 GT:AD:DP:GQ:PL 0/1:131,13:150:44:44,0,1237 chrX 714868 . G A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;DP=151;Dels=0.00;FS=5.187;HaplotypeScore=18.6073;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=-0.262;QD=0.24;ReadPosRankSum=-1.227;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:134,17:151:66:66,0,1337 chrX 714870 . G A 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=18.6073;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=0;MQRankSum=0.501;QD=0.08;ReadPosRankSum=-1.697;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:137,13:150:42:42,0,1258 chrX 714873 . C T 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.549;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=19.5820;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=-0.176;QD=0.44;ReadPosRankSum=0.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,16:143:93:93,0,1168 chrX 714875 . G C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=43.1764;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=0;MQRankSum=0.595;QD=0.20;ReadPosRankSum=1.038;SB=-2.996e+00 GT:AD:DP:GQ:PL 0/1:145,13:158:61:61,0,1402 chrX 714881 . A C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.254;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=51.0014;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=0;MQRankSum=-0.645;QD=0.13;ReadPosRankSum=-3.740;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,37:183:53:53,0,1410 chrX 714883 . G A 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.700;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=57.7128;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=0;MQRankSum=0.267;QD=0.26;ReadPosRankSum=-2.423;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,39:181:77:77,0,1327 chrX 714892 . G T 1397.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=171.2602;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=0;MQRankSum=-0.666;QD=6.85;ReadPosRankSum=5.033;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:77,113:204:99:1427,0,272 chrX 714897 . A G 1139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970;DP=196;Dels=0.00;FS=11.900;HaplotypeScore=184.7716;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=1.409;QD=5.81;ReadPosRankSum=4.987;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,89:196:99:1169,0,713 chrX 714898 . G C 1139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.054;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=183.9829;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=-0.537;QD=5.81;ReadPosRankSum=2.739;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,89:196:99:1169,0,357 chrX 714901 . T A 1194.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;DP=201;Dels=0.00;FS=18.296;HaplotypeScore=229.7963;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=1.509;QD=5.94;ReadPosRankSum=3.106;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,89:201:99:1224,0,721 chrX 714906 . A G 350.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250;DP=212;Dels=0.00;FS=10.053;HaplotypeScore=226.5209;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=1.505;QD=1.65;ReadPosRankSum=1.080;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,69:212:99:380,0,1663 chrX 714907 . A C 299.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.394;DP=212;Dels=0.00;FS=10.053;HaplotypeScore=238.7454;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=1.634;QD=1.41;ReadPosRankSum=1.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,69:212:99:329,0,1660 chrX 714910 . T A,G 1442.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.898;DP=199;Dels=0.00;FS=32.401;HaplotypeScore=61.6266;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.22;MQ0=0;MQRankSum=2.735;QD=7.25;ReadPosRankSum=3.755;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:43,80,76:199:99:1502,898,1181,293,0,489 chrX 714911 . G C 1152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DP=201;Dels=0.00;FS=13.356;HaplotypeScore=277.1408;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=0;MQRankSum=3.115;QD=5.73;ReadPosRankSum=1.124;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,76:201:99:1182,0,856 chrX 714917 . G C 762.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;DP=177;Dels=0.00;FS=9.895;HaplotypeScore=315.3109;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=2.311;QD=4.31;ReadPosRankSum=1.496;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,54:177:99:792,0,918 chrX 714919 . T A 1486.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DP=177;Dels=0.00;FS=37.330;HaplotypeScore=330.2220;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=2.327;QD=8.40;ReadPosRankSum=0.601;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,123:177:99:1516,0,195 chrX 714920 . G C 776.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;DP=177;Dels=0.00;FS=9.895;HaplotypeScore=330.2220;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=1.824;QD=4.38;ReadPosRankSum=-0.384;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,54:177:99:806,0,882 chrX 714922 . A T 1445.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;DP=176;Dels=0.00;FS=37.155;HaplotypeScore=332.1214;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=2.029;QD=8.21;ReadPosRankSum=-0.755;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,122:176:99:1475,0,218 chrX 714924 . G A 1471.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.231;DP=176;Dels=0.00;FS=37.155;HaplotypeScore=343.1000;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=3.104;QD=8.36;ReadPosRankSum=-3.136;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,122:176:99:1501,0,222 chrX 714927 . C T 1499.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.186;DP=176;Dels=0.00;FS=79.053;HaplotypeScore=345.0657;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=4.382;QD=8.52;ReadPosRankSum=-2.854;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,160:176:88:1529,0,88 chrX 714929 . G C 397.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;DP=176;Dels=0.00;FS=13.544;HaplotypeScore=331.3158;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=2.387;QD=2.26;ReadPosRankSum=1.773;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,68:176:99:427,0,1194 chrX 714931 . A C 396.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.185;DP=176;Dels=0.00;FS=17.665;HaplotypeScore=235.6989;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=1.502;QD=2.25;ReadPosRankSum=3.828;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,79:176:99:426,0,1069 chrX 714934 . G A 422.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;DP=176;Dels=0.00;FS=26.852;HaplotypeScore=243.1540;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=1.373;QD=2.40;ReadPosRankSum=5.330;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,95:176:99:452,0,1016 chrX 714942 . A G 430.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.862;DP=155;Dels=0.00;FS=2.240;HaplotypeScore=252.5375;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=1.932;QD=2.77;ReadPosRankSum=-4.699;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,30:155:99:460,0,755 chrX 714943 . A C 404.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.167;DP=150;Dels=0.00;FS=2.218;HaplotypeScore=273.6002;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=2.201;QD=2.69;ReadPosRankSum=-5.119;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,30:150:99:434,0,705 chrX 714948 . T C 232.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;DP=139;Dels=0.00;FS=10.917;HaplotypeScore=393.1069;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=0;MQRankSum=1.922;QD=1.67;ReadPosRankSum=0.513;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,56:139:99:262,0,795 chrX 714958 . A T 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;DP=123;Dels=0.00;FS=2.303;HaplotypeScore=242.1597;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=2.880;QD=1.70;ReadPosRankSum=-5.999;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,21:123:99:239,0,620 chrX 714969 . G A 349.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=16.5151;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=0;MQRankSum=0.180;QD=4.65;ReadPosRankSum=-2.083;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:29,46:75:85:379,0,85 chrX 714976 . C A 317.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=14.6978;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=0;MQRankSum=-0.304;QD=5.56;ReadPosRankSum=-0.041;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:26,30:57:32:347,0,32 chrX 714979 . T G 229.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;DP=42;Dels=0.00;FS=4.260;HaplotypeScore=7.8295;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=0;MQRankSum=0.978;QD=5.45;ReadPosRankSum=-0.196;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:25,15:42:49:259,0,49 chrX 714983 . C G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=17;Dels=0.00;FS=12.304;HaplotypeScore=5.6456;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;MQRankSum=0.102;QD=0.99;ReadPosRankSum=-1.123;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,16:17:6:48,6,0 chrX 714985 . T A 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.063;DP=17;Dels=0.00;FS=7.533;HaplotypeScore=5.6456;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;MQRankSum=0.441;QD=0.88;ReadPosRankSum=-1.701;SB=1.87 GT:AD:DP:GQ:PL 1/1:3,14:17:6:46,6,0 chrX 715114 . G A 89.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.925;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=92.7552;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=0;MQRankSum=6.297;QD=0.54;ReadPosRankSum=-0.299;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:65,99:164:99:119,0,315 chrX 715141 . A G 441.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.181;DP=198;Dels=0.00;FS=4.122;HaplotypeScore=497.3750;MLEAC=1;MLEAF=0.500;MQ=32.79;MQ0=0;MQRankSum=6.319;QD=2.23;ReadPosRankSum=2.331;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:81,117:198:99:471,0,177 chrX 715159 . A G 68.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;DP=191;Dels=0.00;FS=2.190;HaplotypeScore=356.0167;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=0;MQRankSum=-3.312;QD=0.36;ReadPosRankSum=-5.509;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:174,17:191:98:98,0,451 chrX 715162 . A T 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=205.2566;MLEAC=1;MLEAF=0.500;MQ=33.00;MQ0=0;MQRankSum=-4.980;QD=0.43;ReadPosRankSum=-4.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,16:189:99:112,0,419 chrX 715167 . A G 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=90.9801;MLEAC=1;MLEAF=0.500;MQ=33.13;MQ0=0;MQRankSum=-3.160;QD=0.11;ReadPosRankSum=-3.530;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:173,9:182:50:50,0,491 chrX 715168 . G A 58.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DP=182;Dels=0.00;FS=6.085;HaplotypeScore=135.5735;MLEAC=1;MLEAF=0.500;MQ=33.13;MQ0=0;MQRankSum=-5.963;QD=0.32;ReadPosRankSum=-0.270;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:134,48:182:88:88,0,735 chrX 715195 . A G 431.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.253;DP=125;Dels=0.00;FS=15.906;HaplotypeScore=132.9757;MLEAC=1;MLEAF=0.500;MQ=32.26;MQ0=0;MQRankSum=-4.769;QD=3.45;ReadPosRankSum=3.028;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,46:125:99:461,0,128 chrX 715203 . G A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;DP=93;Dels=0.03;FS=6.267;HaplotypeScore=52.7955;MLEAC=1;MLEAF=0.500;MQ=31.21;MQ0=0;MQRankSum=2.869;QD=0.37;ReadPosRankSum=-0.028;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:46,44:90:64:64,0,493 chrX 715222 . G A 290 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.030;DP=26;Dels=0.00;FS=8.129;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;MQRankSum=-0.249;QD=11.15;ReadPosRankSum=-3.162;SB=4.76 GT:AD:DP:GQ:PL 1/1:4,22:26:36:323,36,0 chrX 715234 . A T 55.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;DP=14;Dels=0.00;FS=8.616;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=0;MQRankSum=-0.715;QD=3.93;ReadPosRankSum=3.165;SB=-6.350e+01 GT:AD:DP:GQ:PL 0/1:6,8:14:53:85,0,53 chrX 715237 . C A 156.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DP=18;Dels=0.00;FS=6.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=0;MQRankSum=-0.592;QD=8.67;ReadPosRankSum=2.606;SB=-7.800e+01 GT:AD:DP:GQ:PL 0/1:3,15:18:40:186,0,40 chrX 715240 . T A 176.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;DP=17;Dels=0.00;FS=3.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;MQRankSum=0.306;QD=10.38;ReadPosRankSum=1.531;SB=-1.385e+02 GT:AD:DP:GQ:PL 1/1:1,16:17:4:207,4,0 chrX 715249 . A G 622 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=5.7123;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=11.96;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:78:655,78,0 chrX 715501 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=6.253;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=1.895;QD=22.69;ReadPosRankSum=2.413;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3051,342,0 chrX 715567 . G C 2928 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.42;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2961,339,0 chrX 715574 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=17.49;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2937,330,0 chrX 715592 . A T 3113 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=17.69;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3146,357,0 chrX 715639 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.4414;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.80;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3494,378,0 chrX 716285 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.11;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3673,417,0 chrX 716360 . A T 3077 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.08;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3110,345,0 chrX 716361 . A T 3053 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.91;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3086,345,0 chrX 716566 . C G 2584 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.18;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,117:122:99:2617,300,0 chrX 716647 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.16;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2759,312,0 chrX 716807 . T C 3012 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.67;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3045,339,0 chrX 716812 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.47;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2980,345,0 chrX 716901 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4688;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.62;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3778,414,0 chrX 717010 . T C 3533.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.94;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3533,402,0 chrX 717041 . G T 3124 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.54;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3157,348,0 chrX 717188 . C A 2580 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=19.85;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2613,288,0 chrX 717193 . C A 2342 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8499;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=18.30;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2375,267,0 chrX 717315 . T C 1751 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=20.60;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1784,207,0 chrX 717333 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=70.4827;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=21.18;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1643,186,0 chrX 717336 . T A 1574 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=71.4721;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=20.99;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1607,180,0 chrX 717388 . C A 2107 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=12.9907;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=21.72;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2140,234,0 chrX 717437 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=23.02;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2957,324,0 chrX 717444 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.962;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=0.568;QD=20.13;ReadPosRankSum=1.675;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2489,288,0 chrX 717536 . T C 625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.88;MQ0=0;MQRankSum=-1.702;QD=5.43;ReadPosRankSum=1.672;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:75:658,75,0 chrX 717626 . G A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.85;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4245,465,0 chrX 717822 . C A 4755.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.02;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4755,525,0 chrX 718316 . A T 2733 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=25.78;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2766,303,0 chrX 718404 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.34;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2834,312,0 chrX 718427 . T C 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.192;QD=18.71;ReadPosRankSum=1.677;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2390,279,0 chrX 718433 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.53;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2553,285,0 chrX 718475 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=9.5897;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=20.04;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3407,381,0 chrX 718527 . C T 3662.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.19;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3662,405,0 chrX 718630 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=27.7006;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.61;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3369,387,0 chrX 718679 . G C 3192 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=24.18;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3225,369,0 chrX 718719 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.47;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2837,315,0 chrX 718729 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=4.195;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.655;QD=20.65;ReadPosRankSum=1.680;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2800,312,0 chrX 718866 . G T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.09;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3336,375,0 chrX 719114 . C T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.60;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3775,423,0 chrX 719495 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3032,330,0 chrX 719842 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.93;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2928,318,0 chrX 720040 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.59;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2607,309,0 chrX 720598 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3434,378,0 chrX 720763 . A T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.49;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3712,423,0 chrX 721009 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=166;Dels=0.00;FS=3.940;HaplotypeScore=9.7818;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.125;QD=22.69;ReadPosRankSum=1.711;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3767,405,0 chrX 721305 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.16;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2473,267,0 chrX 721361 . A T 1135 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.61;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1168,132,0 chrX 721520 . A G 1481 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.63;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1514,174,0 chrX 721626 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.95;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3359,387,0 chrX 721671 . G T 2844 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=129.0190;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.83;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2877,333,0 chrX 721886 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.55;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3339,366,0 chrX 721980 . A T 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=103;Dels=0.00;FS=3.139;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.194;QD=22.80;ReadPosRankSum=1.698;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2381,258,0 chrX 722183 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.51;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2737,300,0 chrX 722317 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.0722;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.48;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2753,300,0 chrX 722324 . A G 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=124;Dels=0.00;FS=2.567;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.022;QD=20.74;ReadPosRankSum=2.410;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2605,291,0 chrX 722676 . A C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.248;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.224;QD=23.04;ReadPosRankSum=1.663;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3456,387,0 chrX 722689 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8882;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.36;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3421,381,0 chrX 722943 . T C 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.469;QD=23.71;ReadPosRankSum=1.692;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4101,468,0 chrX 723126 . C A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.0160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4193,474,0 chrX 723534 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.11;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2752,303,0 chrX 723691 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=24.13;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3306,378,0 chrX 723717 . T C 2915 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.42;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2948,345,0 chrX 723909 . T A 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=118;Dels=0.00;FS=4.449;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.429;QD=20.86;ReadPosRankSum=1.643;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2495,279,0 chrX 723930 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.80;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2251,252,0 chrX 723948 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.18;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2047,228,0 chrX 724217 . G C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.50;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3290,378,0 chrX 724246 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.94;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3263,369,0 chrX 724283 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.20;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2836,318,0 chrX 724337 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.0824;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.35;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3172,354,0 chrX 724397 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.12;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3398,372,0 chrX 724519 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.87;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2378,261,0 chrX 724641 . G A 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=-0.885;QD=17.50;ReadPosRankSum=1.617;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1608,180,0 chrX 724642 . A G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=-0.759;QD=16.79;ReadPosRankSum=1.654;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1544,177,0 chrX 724657 . T C 1492 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6339;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=16.76;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1525,171,0 chrX 724710 . A G 1520 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=16.89;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1553,177,0 chrX 724711 . G C 1515 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=16.29;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1548,183,0 chrX 724770 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.44;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1785,198,0 chrX 724819 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=71.3438;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=21.17;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1875,213,0 chrX 724820 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=70.5551;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=21.82;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1888,210,0 chrX 724901 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.65;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1499,162,0 chrX 724987 . A C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=96;Dels=0.00;FS=3.649;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.550;QD=22.56;ReadPosRankSum=1.696;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2199,249,0 chrX 725020 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.03;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2556,288,0 chrX 725123 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2167,246,0 chrX 725433 . C G 2594 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2627,303,0 chrX 725475 . A T 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.019;QD=22.60;ReadPosRankSum=1.698;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2338,264,0 chrX 725575 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.60;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2926,318,0 chrX 725596 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.86;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2662,303,0 chrX 725705 . C T 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.776;QD=22.59;ReadPosRankSum=-1.469;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3321,375,0 chrX 725757 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1004;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.41;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2902,318,0 chrX 725767 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=138;Dels=0.00;FS=17.980;HaplotypeScore=4.8157;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.628;QD=18.75;ReadPosRankSum=3.014;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2620,306,0 chrX 725776 . T C 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.718;QD=18.39;ReadPosRankSum=1.676;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2295,255,0 chrX 725808 . A T 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=3.869;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.341;QD=18.15;ReadPosRankSum=1.673;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2156,243,0 chrX 726314 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.62;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4309,471,0 chrX 726731 . A G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=145;Dels=0.00;FS=3.163;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.323;QD=20.71;ReadPosRankSum=1.708;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3036,354,0 chrX 727023 . G C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3421,393,0 chrX 727128 . T A 2640 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2673,297,0 chrX 727369 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.078;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=17.5467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.029;QD=21.28;ReadPosRankSum=2.094;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:4,170:177:99:3767,429,0 chrX 727488 . G A 4738.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.8978;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.67;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4738,522,0 chrX 727921 . A T 4620.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.9023;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.54;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4620,513,0 chrX 728001 . C T 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.470;DP=202;Dels=0.00;FS=86.628;HaplotypeScore=19.1892;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=6.966;QD=17.86;ReadPosRankSum=2.860;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:19,179:202:99:3608,394,0 chrX 728247 . T C 5890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=318;Dels=0.00;FS=2.982;HaplotypeScore=17.7384;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;MQRankSum=0.786;QD=18.52;ReadPosRankSum=2.364;SB=-3.087e+03 GT:AD:DP:GQ:PL 1/1:2,315:318:99:5890,678,0 chrX 728301 . T C 5326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=313;Dels=0.00;FS=3.006;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=-0.384;QD=17.02;ReadPosRankSum=2.410;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:2,308:313:99:5326,624,0 chrX 728336 . G A 5763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=263;Dels=0.00;FS=5.816;HaplotypeScore=12.8892;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;MQRankSum=-0.416;QD=21.91;ReadPosRankSum=2.760;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:3,260:263:99:5763,642,0 chrX 728337 . T G 5637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.428;DP=263;Dels=0.00;FS=1.973;HaplotypeScore=6.4266;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;MQRankSum=-1.506;QD=21.43;ReadPosRankSum=3.341;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:4,258:263:99:5637,642,0 chrX 728351 . T C 6181.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=22.31;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6181,708,0 chrX 728402 . T C 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=226;Dels=0.00;FS=10.482;HaplotypeScore=9.7637;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=0.293;QD=21.43;ReadPosRankSum=2.285;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:4843,549,0 chrX 728412 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.4629;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=18.80;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4098,450,0 chrX 728436 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.6863;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=1;QD=0.14;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:163:6:54,6,0 chrX 728437 . G C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.390;DP=161;Dels=0.00;FS=16.636;HaplotypeScore=2.6996;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=1;MQRankSum=-0.653;QD=0.12;ReadPosRankSum=-2.434;SB=-1.776e+01 GT:AD:DP:GQ:PL 1/1:159,2:161:6:50,6,0 chrX 728473 . A G 2907 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.160;DP=213;Dels=0.00;FS=2.404;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=4;MQRankSum=-3.427;QD=13.65;ReadPosRankSum=3.402;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:4,208:213:99:2940,336,0 chrX 728530 . C A 4643.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.801;DP=284;Dels=0.00;FS=3.177;HaplotypeScore=13.5380;MLEAC=2;MLEAF=1.00;MQ=22.35;MQ0=72;MQRankSum=1.683;QD=16.35;ReadPosRankSum=1.307;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:6,277:284:99:4643,513,0 chrX 728721 . G A 4750.01 filter AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=4.1810;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=74;QD=16.84;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:7,275:282:99:4750,516,0 chrX 728835 . T G 233.79 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;DP=71;Dels=0.00;FS=10.300;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.83;MQ0=46;MQRankSum=0.451;QD=3.29;ReadPosRankSum=1.553;SB=-1.378e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:10:266,10,0 chrX 728856 . A G 687 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;DP=146;Dels=0.00;FS=14.890;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=75;MQRankSum=4.215;QD=4.71;ReadPosRankSum=1.658;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:55,91:146:42:720,42,0 chrX 728961 . T C 326 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=16;QD=8.15;SB=-7.300e+01 GT:AD:DP:GQ:PL 1/1:2,33:40:42:359,42,0 chrX 728997 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=3;QD=1.98;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:49,6,0 chrX 729042 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;DP=187;Dels=0.00;FS=2.751;HaplotypeScore=39.0368;MLEAC=1;MLEAF=0.500;MQ=15.10;MQ0=116;MQRankSum=0.249;QD=0.07;ReadPosRankSum=-2.526;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:139,48:187:43:43,0,553 chrX 729099 . G A 1506.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.221;DP=537;Dels=0.00;FS=16.959;HaplotypeScore=14.2285;MLEAC=1;MLEAF=0.500;MQ=11.65;MQ0=308;MQRankSum=4.625;QD=2.80;ReadPosRankSum=1.646;SB=-6.230e+02 GT:AD:DP:GQ:PL 0/1:253,279:537:99:1536,0,295 chrX 729142 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.779;DP=477;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=5.59;MQ0=341;MQRankSum=-3.614;QD=0.05;ReadPosRankSum=3.602;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:5,469:477:6:53,6,0 chrX 729186 . A G 80.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=274;Dels=0.00;FS=36.955;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.34;MQ0=242;MQRankSum=-2.845;QD=0.29;ReadPosRankSum=2.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,271:274:15:113,15,0 chrX 729249 . T C 360.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.306;DP=423;Dels=0.00;FS=15.413;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.56;MQ0=350;MQRankSum=1.515;QD=0.85;ReadPosRankSum=1.188;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:190,233:423:24:393,24,0 chrX 729273 . A G 698 filter AC=2;AF=1.00;AN=2;DP=545;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.12;MQ0=338;QD=1.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,541:545:84:731,84,0 chrX 730613 . G A 155.06 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.55;MQ0=12;QD=5.74;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:21:188,21,0 chrX 730652 . T C 332 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.31;MQ0=11;MQRankSum=0.299;QD=8.30;ReadPosRankSum=1.614;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:42:365,42,0 chrX 730660 . T A 339 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=15;QD=8.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:42:372,42,0 chrX 730662 . T C 332 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=15;QD=7.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:42:365,42,0 chrX 730795 . T C 544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=33;Dels=0.00;FS=3.153;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=22.91;MQ0=2;MQRankSum=-0.040;QD=16.48;ReadPosRankSum=2.131;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:66:577,66,0 chrX 730841 . A C 1367 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=6;QD=18.99;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1400,162,0 chrX 730885 . T A 813 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=20;QD=13.11;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:93:846,93,0 chrX 730903 . T C 413 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=28;QD=8.10;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:1,48:51:51:446,51,0 chrX 731032 . A G 417 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.03;MQ0=27;QD=7.45;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:51:450,51,0 chrX 731132 . C T 77.51 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=9.37;MQ0=37;QD=1.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:12:110,12,0 chrX 736365 . A C 2095 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=4;QD=18.38;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2128,249,0 chrX 737720 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=7.02;MQ0=61;QD=0.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:6:50,6,0 chrX 737755 . C T 78.51 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=9.88;MQ0=46;QD=1.48;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,52:52:12:111,12,0 chrX 737756 . C T 77.51 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=9.97;MQ0=45;QD=1.49;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,51:51:12:110,12,0 chrX 737925 . G A 756 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=41;QD=9.69;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:90:789,90,0 chrX 737966 . G T 822 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=10;QD=16.78;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:855,96,0 chrX 737968 . C T 953 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=9;QD=16.72;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:986,111,0 chrX 738000 . A G 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=48;Dels=0.04;FS=5.488;HaplotypeScore=35.4408;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=0;MQRankSum=1.582;QD=20.69;ReadPosRankSum=1.506;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1026,114,0 chrX 738022 . T C 626 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=23.19;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:659,75,0 chrX 738062 . G A 458 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;QD=21.81;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:57:491,57,0 chrX 738065 . T C 381 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=18.14;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:48:414,48,0 chrX 738074 . G T 403 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=1;QD=20.15;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:436,51,0 chrX 738075 . G T 394 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=2;QD=18.76;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:427,51,0 chrX 738101 . C T 542 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=10;QD=14.26;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:575,66,0 chrX 738215 . G A 454 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=37;QD=7.44;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:54:487,54,0 chrX 739973 . C T 600 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=21;QD=9.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:72:633,72,0 chrX 740023 . T C 255 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.89;MQ0=42;QD=4.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:33:288,33,0 chrX 740210 . C T 517 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=4;QD=11.49;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:63:550,63,0 chrX 740243 . C T 39.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.40;MQ0=4;QD=5.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:9:72,9,0 chrX 740309 . C T 141.06 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.57;MQ0=7;QD=3.00;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:21:174,21,0 chrX 740361 . A C 148.06 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=18.98;MQ0=3;QD=2.69;SB=-2.206e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:21:181,21,0 chrX 740363 . G A 148.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=3;MQRankSum=0.306;QD=2.74;ReadPosRankSum=1.664;SB=-2.206e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:21:181,21,0 chrX 740367 . G T 149.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=1;MQRankSum=-0.650;QD=3.04;ReadPosRankSum=-1.083;SB=-2.206e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:21:182,21,0 chrX 740373 . T C 220 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.90;MQ0=4;QD=4.49;SB=-9.300e+01 GT:AD:DP:GQ:PL 1/1:2,47:49:30:253,30,0 chrX 740403 . T C 124.13 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.52;MQ0=7;QD=4.43;SB=-7.863e+01 GT:AD:DP:GQ:PL 1/1:0,27:28:18:157,18,0 chrX 740578 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.96;MQ0=54;QD=0.41;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,57:58:6:55,6,0 chrX 741359 . G A 455 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.30;MQ0=22;QD=7.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:57:488,57,0 chrX 741375 . A G 495 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.08;MQ0=25;QD=6.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:63:528,63,0 chrX 741444 . C G 205.01 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.61;MQ0=53;QD=2.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:75:27:238,27,0 chrX 741464 . T C 125.13 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.12;MQ0=60;QD=1.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,67:70:18:158,18,0 chrX 741534 . C T 1508 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=19.95;MQ0=23;QD=16.22;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1541,174,0 chrX 741616 . T C 1378 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.65;MQ0=30;QD=13.38;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:1411,162,0 chrX 741618 . G T 1462 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.41;MQ0=31;QD=14.62;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1495,168,0 chrX 741716 . T C 251 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.70;MQ0=31;QD=4.18;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:33:284,33,0 chrX 741777 . A G 550 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=16.66;MQ0=22;MQRankSum=0.257;QD=7.24;ReadPosRankSum=1.668;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:2,74:76:66:583,66,0 chrX 741815 . A G 355 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=14.12;MQ0=40;MQRankSum=-0.325;QD=4.93;ReadPosRankSum=1.625;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:1,71:72:45:388,45,0 chrX 743180 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.66;MQ0=14;QD=1.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:6:53,6,0 chrX 743331 . C T 239 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.21;MQ0=26;QD=6.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:30:272,30,0 chrX 743332 . C T 235 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.21;MQ0=26;QD=6.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:37:30:268,30,0 chrX 744155 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.88;MQ0=7;QD=2.18;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:53,6,0 chrX 745593 . C A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=0;QD=2.11;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:48,6,0 chrXI 28 . A C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=2.9413;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=12;MQRankSum=0.467;QD=0.47;ReadPosRankSum=-0.156;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,4:25:42:42,0,191 chrXI 89 . C T 66.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:99,12,0 chrXI 116 . C T 76.51 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=0;QD=2.39;SB=-2.352e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:109,12,0 chrXI 160 . C T 75.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=24;Dels=0.00;FS=27.042;HaplotypeScore=16.5294;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=0;MQRankSum=0.436;QD=3.15;ReadPosRankSum=1.833;SB=-1.452e+01 GT:AD:DP:GQ:PL 1/1:3,21:24:12:108,12,0 chrXI 260 . A G 130.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737;DP=15;Dels=0.00;FS=8.129;HaplotypeScore=5.7220;MLEAC=2;MLEAF=1.00;MQ=20.43;MQ0=1;MQRankSum=-1.737;QD=8.67;ReadPosRankSum=1.470;SB=-1.901e+01 GT:AD:DP:GQ:PL 1/1:1,13:15:21:163,21,0 chrXI 295 . G A 225.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.848;DP=65;Dels=0.00;FS=78.577;HaplotypeScore=5.9513;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=6;MQRankSum=1.137;QD=3.46;ReadPosRankSum=3.651;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:40,22:65:99:255,0,375 chrXI 296 . T A 357.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=65;Dels=0.00;FS=54.728;HaplotypeScore=8.9211;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=6;MQRankSum=-1.002;QD=5.49;ReadPosRankSum=-3.256;SB=-5.582e+01 GT:AD:DP:GQ:PL 0/1:25,40:65:99:387,0,252 chrXI 306 . T C 350.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.388;DP=65;Dels=0.00;FS=84.457;HaplotypeScore=5.9473;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=6;MQRankSum=-0.536;QD=5.38;ReadPosRankSum=-4.011;SB=-5.702e+01 GT:AD:DP:GQ:PL 0/1:22,43:65:99:380,0,256 chrXI 307 . G A 355.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DP=65;Dels=0.00;FS=84.457;HaplotypeScore=2.9748;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=6;MQRankSum=0.136;QD=5.46;ReadPosRankSum=-2.522;SB=-5.702e+01 GT:AD:DP:GQ:PL 0/1:22,43:65:99:385,0,243 chrXI 324 . T A 802 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=17.3032;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=6;QD=12.15;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:835,102,0 chrXI 486 . C T 113.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.464;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=1;MQRankSum=1.380;QD=5.96;ReadPosRankSum=0.789;SB=2.74 GT:AD:DP:GQ:PL 1/1:5,14:19:15:146,15,0 chrXI 515 . C T 130.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.082;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=1;MQRankSum=1.525;QD=4.49;ReadPosRankSum=1.377;SB=2.87 GT:AD:DP:GQ:PL 1/1:9,20:29:18:163,18,0 chrXI 517 . A T 137.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.656;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=23.4335;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=1;MQRankSum=1.673;QD=4.73;ReadPosRankSum=1.082;SB=2.87 GT:AD:DP:GQ:PL 1/1:9,20:29:18:170,18,0 chrXI 518 . A C 122.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.787;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=23.4335;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=1;MQRankSum=1.673;QD=4.21;ReadPosRankSum=0.787;SB=2.87 GT:AD:DP:GQ:PL 1/1:9,20:29:18:155,18,0 chrXI 546 . T G 126.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.840;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=1;MQRankSum=2.421;QD=5.26;ReadPosRankSum=0.290;SB=2.87 GT:AD:DP:GQ:PL 1/1:8,16:24:18:159,18,0 chrXI 568 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.06;MQ0=0;QD=1.27;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:49,6,0 chrXI 2183 . A G 91.26 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=4;QD=1.66;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:15:124,15,0 chrXI 2197 . T C 195.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3838;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=2;MQRankSum=3.528;QD=2.95;ReadPosRankSum=-0.731;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:9,57:66:27:228,27,0 chrXI 2198 . C G 208 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2997;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=2;MQRankSum=-1.732;QD=3.15;ReadPosRankSum=1.677;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:1,62:66:30:241,30,0 chrXI 2205 . C T 283 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2997;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=2;MQRankSum=3.525;QD=3.88;ReadPosRankSum=-1.168;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:8,65:73:36:316,36,0 chrXI 2223 . G A 317 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3260;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=2;MQRankSum=3.290;QD=4.01;ReadPosRankSum=2.368;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:8,71:79:39:350,39,0 chrXI 2231 . G T 311 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=2;MQRankSum=1.447;QD=3.99;ReadPosRankSum=1.258;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:3,72:78:39:344,39,0 chrXI 2236 . A G 299 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5576;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=2;MQRankSum=2.919;QD=3.83;ReadPosRankSum=2.477;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:6,72:78:39:332,39,0 chrXI 2239 . A G 309 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.7258;MLEAC=2;MLEAF=1.00;MQ=24.99;MQ0=2;QD=4.01;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:39:342,39,0 chrXI 2254 . A G 310 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.35;MQ0=0;QD=5.08;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:39:343,39,0 chrXI 2259 . C T 188.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=0;QD=3.76;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:24:221,24,0 chrXI 2265 . A G 190.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;QD=4.22;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:24:223,24,0 chrXI 2268 . C T 185.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;QD=4.11;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:24:218,24,0 chrXI 2397 . G T 2308.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.828;DP=245;Dels=0.00;FS=86.370;HaplotypeScore=35.7900;MLEAC=1;MLEAF=0.500;MQ=23.04;MQ0=57;MQRankSum=5.514;QD=9.42;ReadPosRankSum=-6.507;SB=-1.128e+03 GT:AD:DP:GQ:PL 0/1:87,158:245:99:2338,0,373 chrXI 2457 . A C 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;DP=176;Dels=0.00;FS=53.576;HaplotypeScore=28.6541;MLEAC=1;MLEAF=0.500;MQ=25.16;MQ0=37;MQRankSum=-1.127;QD=0.08;ReadPosRankSum=-4.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,30:176:44:44,0,1820 chrXI 2483 . T C 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;DP=37;Dels=0.00;FS=17.681;HaplotypeScore=4.2495;MLEAC=1;MLEAF=0.500;MQ=13.88;MQ0=10;MQRankSum=0.882;QD=2.05;ReadPosRankSum=-2.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:7,29:37:31:106,0,31 chrXI 2492 . A G 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=13;Dels=0.00;FS=26.646;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=14.98;MQ0=2;MQRankSum=0.143;QD=3.38;ReadPosRankSum=2.637;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,8:13:9:76,9,0 chrXI 2538 . T C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.572;DP=40;Dels=0.00;FS=21.408;HaplotypeScore=43.8268;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=4;MQRankSum=-2.325;QD=0.68;ReadPosRankSum=1.250;SB=-3.090e+01 GT:AD:DP:GQ:PL 0/1:22,18:40:57:57,0,256 chrXI 2546 . T C 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.397;DP=55;Dels=0.00;FS=29.702;HaplotypeScore=57.0437;MLEAC=1;MLEAF=0.500;MQ=20.26;MQ0=6;MQRankSum=0.010;QD=0.89;ReadPosRankSum=0.211;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:33,22:55:79:79,0,255 chrXI 2547 . G T 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;DP=56;Dels=0.00;FS=8.450;HaplotypeScore=69.4007;MLEAC=1;MLEAF=0.500;MQ=20.08;MQ0=7;MQRankSum=-1.118;QD=0.39;ReadPosRankSum=1.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,15:56:52:52,0,262 chrXI 2549 . C A 165.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.793;DP=57;Dels=0.00;FS=16.122;HaplotypeScore=46.4823;MLEAC=1;MLEAF=0.500;MQ=19.91;MQ0=8;MQRankSum=-0.962;QD=2.89;ReadPosRankSum=1.212;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:18,39:57:99:195,0,134 chrXI 2550 . A G 160.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DP=59;Dels=0.00;FS=16.122;HaplotypeScore=46.4823;MLEAC=1;MLEAF=0.500;MQ=19.57;MQ0=10;MQRankSum=-0.985;QD=2.71;ReadPosRankSum=1.189;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:19,39:59:99:190,0,146 chrXI 2556 . T G 237.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300;DP=105;Dels=0.00;FS=18.811;HaplotypeScore=65.9196;MLEAC=1;MLEAF=0.500;MQ=17.93;MQ0=28;MQRankSum=-1.836;QD=2.26;ReadPosRankSum=0.841;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:30,75:105:99:267,0,239 chrXI 2557 . T C 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.866;DP=112;Dels=0.00;FS=10.179;HaplotypeScore=56.4199;MLEAC=1;MLEAF=0.500;MQ=17.86;MQ0=31;MQRankSum=-1.278;QD=1.30;ReadPosRankSum=0.214;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:66,46:112:99:176,0,340 chrXI 2565 . C T 128.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.224;DP=162;Dels=0.00;FS=42.849;HaplotypeScore=49.2672;MLEAC=1;MLEAF=0.500;MQ=17.61;MQ0=50;MQRankSum=-0.845;QD=0.79;ReadPosRankSum=-2.148;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,34:162:99:158,0,561 chrXI 2610 . T C 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;DP=254;Dels=0.00;FS=10.698;HaplotypeScore=43.3366;MLEAC=1;MLEAF=0.500;MQ=18.29;MQ0=73;MQRankSum=-1.466;QD=0.69;ReadPosRankSum=1.728;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:180,73:254:99:205,0,1072 chrXI 2624 . C T 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.435;DP=230;Dels=0.00;FS=20.951;HaplotypeScore=10.6925;MLEAC=1;MLEAF=0.500;MQ=17.90;MQ0=73;MQRankSum=-5.270;QD=1.00;ReadPosRankSum=-0.827;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:113,116:230:99:261,0,846 chrXI 2626 . T A 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.563;DP=225;Dels=0.00;FS=26.206;HaplotypeScore=11.4811;MLEAC=1;MLEAF=0.500;MQ=17.85;MQ0=73;MQRankSum=-5.009;QD=0.84;ReadPosRankSum=-0.734;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:111,114:225:99:219,0,853 chrXI 2639 . C T 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;DP=200;Dels=0.00;FS=33.151;HaplotypeScore=10.9892;MLEAC=1;MLEAF=0.500;MQ=17.75;MQ0=68;MQRankSum=-5.836;QD=0.93;ReadPosRankSum=-0.170;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:93,104:200:99:215,0,776 chrXI 2652 . A G 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;DP=136;Dels=0.00;FS=110.997;HaplotypeScore=25.4022;MLEAC=1;MLEAF=0.500;MQ=19.47;MQ0=41;MQRankSum=-4.258;QD=0.60;ReadPosRankSum=3.549;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:69,67:136:99:112,0,496 chrXI 2655 . C G 190.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.469;DP=127;Dels=0.00;FS=138.038;HaplotypeScore=25.3475;MLEAC=1;MLEAF=0.500;MQ=19.68;MQ0=35;MQRankSum=-5.474;QD=1.50;ReadPosRankSum=0.508;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:37,87:127:99:220,0,337 chrXI 2717 . G T 234.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.191;DP=47;Dels=0.00;FS=58.608;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=2;MQRankSum=2.776;QD=4.98;ReadPosRankSum=3.280;SB=-2.228e+01 GT:AD:DP:GQ:PL 0/1:10,37:47:9:264,0,9 chrXI 2722 . C G 325 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.5363;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=3;QD=6.25;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:42:358,42,0 chrXI 2731 . A G 196.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;DP=49;Dels=0.00;FS=71.395;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=6;MQRankSum=2.164;QD=4.00;ReadPosRankSum=3.693;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:20,29:49:99:226,0,140 chrXI 2733 . T A 189.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.092;DP=54;Dels=0.00;FS=94.041;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=22.25;MQ0=9;MQRankSum=2.985;QD=3.50;ReadPosRankSum=3.757;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:26,28:54:99:219,0,167 chrXI 2734 . C T 467 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=9;QD=8.49;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:57:500,57,0 chrXI 2737 . G A 181.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;DP=60;Dels=0.00;FS=111.607;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=10;MQRankSum=3.656;QD=3.02;ReadPosRankSum=3.459;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:31,29:60:99:211,0,172 chrXI 2740 . T C 166.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.022;DP=62;Dels=0.00;FS=108.521;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=10;MQRankSum=4.219;QD=2.68;ReadPosRankSum=2.579;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:33,29:62:99:196,0,191 chrXI 2796 . A T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;DP=90;Dels=0.00;FS=2.653;HaplotypeScore=2.5059;MLEAC=1;MLEAF=0.500;MQ=19.22;MQ0=19;MQRankSum=-0.535;QD=0.74;ReadPosRankSum=-2.006;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:43,47:90:97:97,0,274 chrXI 2812 . G A 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DP=82;Dels=0.00;FS=2.258;HaplotypeScore=6.6323;MLEAC=1;MLEAF=0.500;MQ=17.91;MQ0=19;MQRankSum=2.047;QD=1.43;ReadPosRankSum=-2.947;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:63,19:82:99:147,0,156 chrXI 2828 . A G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869;DP=73;Dels=0.00;FS=11.602;HaplotypeScore=6.6323;MLEAC=1;MLEAF=0.500;MQ=18.08;MQ0=11;MQRankSum=2.369;QD=0.29;ReadPosRankSum=-3.060;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:65,8:73:51:51,0,192 chrXI 2905 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=22.19;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:987,105,0 chrXI 2928 . A G 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=0;MQRankSum=0.510;QD=24.03;ReadPosRankSum=1.631;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:96:850,96,0 chrXI 3393 . G A 1757 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.74;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1790,198,0 chrXI 3435 . C A 2081 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2114,237,0 chrXI 3814 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1662,186,0 chrXI 3898 . A G 2594 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.80;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2627,294,0 chrXI 3922 . T C 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=2.874;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.817;QD=22.72;ReadPosRankSum=2.349;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2260,255,0 chrXI 3968 . A T 2290 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.13;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2323,255,0 chrXI 4271 . T C 2623 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2656,306,0 chrXI 4534 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.30;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2503,270,0 chrXI 5087 . T G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.96;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3930,447,0 chrXI 5583 . T C 1873 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.9993;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.54;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1906,216,0 chrXI 5833 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.49;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2241,240,0 chrXI 5911 . T C 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=97;Dels=0.00;FS=4.305;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.661;QD=21.58;ReadPosRankSum=1.661;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2126,243,0 chrXI 6589 . A G 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=136;Dels=0.00;FS=4.028;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.499;QD=21.44;ReadPosRankSum=1.680;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2949,345,0 chrXI 6932 . G A 6280.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.06;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6280,702,0 chrXI 7040 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.12;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3802,423,0 chrXI 7061 . T A 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=4.633;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.117;QD=22.22;ReadPosRankSum=1.676;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4133,447,0 chrXI 7228 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.69;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4107,447,0 chrXI 7314 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.66;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2926,321,0 chrXI 7552 . A T 1354 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.57;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1387,156,0 chrXI 7571 . T G 1526 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.44;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1559,174,0 chrXI 7704 . A G 901 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:934,105,0 chrXI 7754 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,48:51:99:1212,132,0 chrXI 8317 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=139;Dels=0.00;FS=5.269;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.620;QD=17.04;ReadPosRankSum=3.394;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:4,134:139:99:2401,270,0 chrXI 8354 . G T 2304 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=16.1941;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=15.67;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2337,258,0 chrXI 9055 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.12;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2400,273,0 chrXI 9352 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3514,381,0 chrXI 9467 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.558;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.091;QD=22.36;ReadPosRankSum=1.618;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3399,375,0 chrXI 9517 . A T 3125 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.3057;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.26;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3158,351,0 chrXI 9675 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.530;QD=23.34;ReadPosRankSum=1.687;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3595,396,0 chrXI 9915 . G A 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=136;Dels=0.00;FS=4.491;HaplotypeScore=7.4192;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.731;QD=22.74;ReadPosRankSum=1.116;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3125,342,0 chrXI 10419 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2720,294,0 chrXI 10550 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2828,306,0 chrXI 10762 . A G 5223.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.41;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5223,573,0 chrXI 11253 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.07;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3104,342,0 chrXI 11792 . A G 3007 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3040,339,0 chrXI 12089 . A G 2435 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.81;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2468,273,0 chrXI 12236 . A G 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=141;Dels=0.00;FS=6.240;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.630;QD=23.70;ReadPosRankSum=2.380;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3342,369,0 chrXI 12585 . C G 2179 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.46;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2212,249,0 chrXI 12688 . G T 1835 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=117.6816;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=14.34;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1868,222,0 chrXI 12708 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.09;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2425,273,0 chrXI 13039 . C G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3424,396,0 chrXI 13310 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.50;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2204,237,0 chrXI 13335 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.57;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2382,270,0 chrXI 13358 . A T 2476 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.65;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2509,276,0 chrXI 13360 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.677;QD=19.22;ReadPosRankSum=2.392;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2532,282,0 chrXI 13378 . A G 2666 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.90;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2699,303,0 chrXI 13502 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.44;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2471,270,0 chrXI 13635 . A T 1749 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.63;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1782,192,0 chrXI 13729 . T G 2090 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.29;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2123,234,0 chrXI 13945 . C A 2607 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.07;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2640,282,0 chrXI 13973 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.10;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2897,318,0 chrXI 14184 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.81;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3285,378,0 chrXI 14229 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.155;QD=22.12;ReadPosRankSum=1.674;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2687,303,0 chrXI 14326 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.05;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3010,336,0 chrXI 14347 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7953;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.93;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3147,342,0 chrXI 14494 . G C 2834 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.7789;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.42;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2867,324,0 chrXI 14550 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.21;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3389,375,0 chrXI 14566 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.52;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3051,333,0 chrXI 14729 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.680;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.118;QD=22.06;ReadPosRankSum=1.689;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3574,408,0 chrXI 14779 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.263;QD=21.72;ReadPosRankSum=1.706;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2922,327,0 chrXI 14945 . C G 2306 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=15.6773;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.17;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2339,264,0 chrXI 15842 . A G 671 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=21.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:81:704,81,0 chrXI 15843 . A G 649 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=20.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:78:682,78,0 chrXI 15847 . A G 639 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;MQRankSum=-1.509;QD=20.61;ReadPosRankSum=1.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:78:672,78,0 chrXI 15848 . A G 626 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=20.87;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:75:659,75,0 chrXI 16538 . G C 2778 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.87;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2811,330,0 chrXI 16556 . A G 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-1.341;QD=21.23;ReadPosRankSum=1.672;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2496,282,0 chrXI 16671 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=4.329;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.278;QD=21.44;ReadPosRankSum=1.691;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3645,414,0 chrXI 16677 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=178;Dels=0.00;FS=7.922;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.370;QD=20.53;ReadPosRankSum=2.422;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3654,417,0 chrXI 16782 . A G 2759 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.06;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2792,318,0 chrXI 16794 . T A 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.205;QD=21.50;ReadPosRankSum=1.705;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2764,300,0 chrXI 16846 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.432;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.073;QD=20.24;ReadPosRankSum=1.645;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2441,270,0 chrXI 16866 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.26;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2393,264,0 chrXI 17051 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.05;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2149,231,0 chrXI 17206 . T A 1764 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1797,195,0 chrXI 17335 . G C 2946 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2979,339,0 chrXI 17458 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.3715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.366;QD=22.68;ReadPosRankSum=2.422;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4060,462,0 chrXI 17941 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.34;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3944,426,0 chrXI 17990 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.13;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3386,387,0 chrXI 18181 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.06;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2173,237,0 chrXI 18416 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.93;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1638,180,0 chrXI 18538 . T G 2082 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2115,237,0 chrXI 18574 . A G 2188 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.56;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2221,246,0 chrXI 18639 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.64;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2523,276,0 chrXI 18811 . C A 3035 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=21.37;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3068,342,0 chrXI 18848 . A G 2289 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.577;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;MQRankSum=-0.361;QD=16.47;ReadPosRankSum=1.657;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2322,270,0 chrXI 18850 . G C 2166 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=15.93;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2199,261,0 chrXI 18852 . A T 2349 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=17.15;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2382,261,0 chrXI 18863 . T A 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-1.587;QD=14.94;ReadPosRankSum=1.708;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2170,237,0 chrXI 18968 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=18.53;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2776,312,0 chrXI 18976 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=19.97;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3009,330,0 chrXI 19023 . A G 1888 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.301;DP=127;Dels=0.00;FS=4.919;HaplotypeScore=5.7668;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;MQRankSum=0.058;QD=14.87;ReadPosRankSum=4.901;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:10,117:127:99:1921,228,0 chrXI 19024 . G A 2044 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.999;DP=125;Dels=0.00;FS=13.737;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=1.505;QD=16.35;ReadPosRankSum=3.919;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:7,117:125:99:2077,237,0 chrXI 19032 . C T 2223 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=16.84;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2256,255,0 chrXI 19141 . T G 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.154;DP=102;Dels=0.00;FS=6.990;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.702;QD=21.26;ReadPosRankSum=2.302;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,98:102:99:2202,246,0 chrXI 19164 . A G 2514 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.50;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2547,282,0 chrXI 19206 . T C 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-2.402;QD=23.62;ReadPosRankSum=2.331;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2489,279,0 chrXI 19335 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=23.04;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2383,276,0 chrXI 19491 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=22.81;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2268,243,0 chrXI 19503 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=19.62;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1701,195,0 chrXI 19521 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=18.89;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1431,150,0 chrXI 19529 . C T 1193 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=17.04;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1226,141,0 chrXI 19537 . C G 1223 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=17.23;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1256,141,0 chrXI 19563 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=17.62;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1284,138,0 chrXI 19657 . T C 1401 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.96;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1434,162,0 chrXI 20209 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.02;FS=0.000;HaplotypeScore=66.4592;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=0.28;SB=-7.268e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:6:54,6,0 chrXI 20275 . C T 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.569;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.9967;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.086;QD=21.30;ReadPosRankSum=-0.103;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2887,324,0 chrXI 20424 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=170;Dels=0.00;FS=7.025;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=1.814;QD=23.88;ReadPosRankSum=2.377;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4059,459,0 chrXI 20616 . G A 4785.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.46;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4785,540,0 chrXI 20761 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=193;Dels=0.00;FS=7.701;HaplotypeScore=16.0337;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-1.794;QD=20.62;ReadPosRankSum=2.424;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:3980,453,0 chrXI 20802 . A T 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.794;QD=20.79;ReadPosRankSum=1.656;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3763,426,0 chrXI 20824 . A T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.80;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3786,426,0 chrXI 20841 . C T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6895;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.41;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4057,435,0 chrXI 20955 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.68;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2938,324,0 chrXI 21006 . C G 2327 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=22.16;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2360,270,0 chrXI 21008 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=22.51;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2374,261,0 chrXI 21063 . A C 2186 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.01;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2219,246,0 chrXI 21193 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=16.79;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1175,132,0 chrXI 21194 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=16.66;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1166,132,0 chrXI 21208 . C T 952 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=14.00;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:985,108,0 chrXI 21214 . A T 911 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=12.83;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:944,105,0 chrXI 21250 . A T 91.26 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=51.6020;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=1.20;SB=-6.393e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:15:124,15,0 chrXI 21280 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=14.39;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:925,105,0 chrXI 21328 . C T 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=17.7568;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.879;QD=23.00;ReadPosRankSum=1.481;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1643,180,0 chrXI 21391 . T C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=87;Dels=0.00;FS=2.895;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.467;QD=23.53;ReadPosRankSum=2.337;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:2080,228,0 chrXI 21546 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.58;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2167,249,0 chrXI 21568 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.01;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2105,240,0 chrXI 21793 . G T 2794 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.83;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2827,309,0 chrXI 22075 . G T 209.01 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=1;QD=3.37;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:27:242,27,0 chrXI 22088 . C T 456 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=7.24;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:54:489,54,0 chrXI 22343 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0781;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.25;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3032,327,0 chrXI 22620 . C T 4410.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.1399;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.73;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4410,486,0 chrXI 22917 . C T 4555.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.36;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4555,504,0 chrXI 23064 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.79;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3988,450,0 chrXI 23296 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.5781;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.75;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4180,447,0 chrXI 23463 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=202;Dels=0.00;FS=3.516;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.710;QD=20.64;ReadPosRankSum=1.680;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4169,480,0 chrXI 23592 . A G 5524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.866;QD=21.16;ReadPosRankSum=1.652;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,259:261:99:5524,621,0 chrXI 23688 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=182;Dels=0.00;FS=2.996;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.092;QD=21.11;ReadPosRankSum=2.368;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3842,444,0 chrXI 23928 . T C 4516.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.6473;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4516,501,0 chrXI 24181 . A G 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=152;Dels=0.00;FS=2.858;HaplotypeScore=7.5170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.448;QD=21.15;ReadPosRankSum=2.417;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3248,378,0 chrXI 24745 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,130:135:99:2821,318,0 chrXI 24924 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.48;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2798,324,0 chrXI 25153 . A G 2691 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.02;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2724,312,0 chrXI 25154 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.78;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2843,309,0 chrXI 25337 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.68;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4049,447,0 chrXI 25386 . G A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=22.73;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3819,435,0 chrXI 25577 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=17.54;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2804,309,0 chrXI 25599 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=17.09;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2835,318,0 chrXI 25601 . A G 2634 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=16.16;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2667,303,0 chrXI 25610 . T G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.471;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=-0.933;QD=15.30;ReadPosRankSum=1.712;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2619,294,0 chrXI 25622 . G C 2508 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=14.67;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2541,285,0 chrXI 25673 . G A 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1904;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.629;QD=19.02;ReadPosRankSum=0.218;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2601,268,0 chrXI 26450 . T G 1129 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.52;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1162,129,0 chrXI 26709 . C A 1294 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.37;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1327,141,0 chrXI 26810 . A T 1930 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.83;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1963,225,0 chrXI 26971 . A C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=141;Dels=0.00;FS=4.156;HaplotypeScore=12.3489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.276;QD=20.84;ReadPosRankSum=1.657;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,137:141:99:2972,333,0 chrXI 27091 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=161;Dels=0.00;FS=2.955;HaplotypeScore=11.1238;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.484;QD=20.50;ReadPosRankSum=2.419;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3301,375,0 chrXI 27322 . T G 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.226;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.950;QD=21.28;ReadPosRankSum=1.704;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2714,306,0 chrXI 27376 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.3607;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.73;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3318,366,0 chrXI 27541 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2986,324,0 chrXI 27643 . T C 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.738;QD=22.64;ReadPosRankSum=1.700;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2501,279,0 chrXI 27752 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.859;QD=21.80;ReadPosRankSum=1.705;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2823,318,0 chrXI 28033 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.978;QD=23.57;ReadPosRankSum=1.685;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3465,390,0 chrXI 28300 . G C 3699.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.63;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3699,420,0 chrXI 30189 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.51;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2720,318,0 chrXI 30361 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.70;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4223,465,0 chrXI 30438 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=11.4110;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.11;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3975,429,0 chrXI 30481 . A G 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=200;Dels=0.00;FS=4.750;HaplotypeScore=7.8281;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.364;QD=22.63;ReadPosRankSum=1.697;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4526,504,0 chrXI 30593 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.82;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3862,417,0 chrXI 30716 . T G 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=3.680;HaplotypeScore=11.3883;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.265;QD=22.80;ReadPosRankSum=1.714;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4514,513,0 chrXI 30911 . A T 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.033;QD=23.01;ReadPosRankSum=1.700;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2541,270,0 chrXI 30923 . A C 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.891;QD=22.50;ReadPosRankSum=1.698;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2350,267,0 chrXI 31185 . T C 2182 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.49;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2215,252,0 chrXI 31379 . A G 2675 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.48;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2708,303,0 chrXI 31754 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.92;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2941,327,0 chrXI 31804 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.08;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3027,333,0 chrXI 32054 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3612,399,0 chrXI 32212 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.45;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3861,432,0 chrXI 32644 . T C 2774 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.01;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2807,324,0 chrXI 32647 . T A 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=155;Dels=0.00;FS=2.866;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.181;QD=19.08;ReadPosRankSum=2.402;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2990,330,0 chrXI 32704 . A G 4386.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.69;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4386,518,0 chrXI 32862 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=4.309;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.156;QD=21.42;ReadPosRankSum=1.713;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3812,444,0 chrXI 33673 . G A 4891.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.07;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4891,546,0 chrXI 33790 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.25;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3605,393,0 chrXI 34159 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.49;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3250,369,0 chrXI 34378 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.99;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3407,366,0 chrXI 34404 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6769;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.39;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3560,408,0 chrXI 34444 . C G 3778.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.9624;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.36;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3778,417,0 chrXI 34686 . G C 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.590;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=2.395;QD=22.84;ReadPosRankSum=-1.866;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4156,433,0 chrXI 35136 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=159;Dels=0.00;FS=2.988;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.538;QD=21.55;ReadPosRankSum=2.357;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3427,390,0 chrXI 35244 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.49;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3047,330,0 chrXI 35283 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.8095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,154:159:99:3431,387,0 chrXI 35589 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=19.65;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3655,423,0 chrXI 35608 . C T 4551.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.53;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4551,492,0 chrXI 35758 . T C 5369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.8663;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.031;QD=24.18;ReadPosRankSum=1.716;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:5369,600,0 chrXI 35874 . T C 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=217;Dels=0.00;FS=10.581;HaplotypeScore=19.0091;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.117;QD=20.74;ReadPosRankSum=2.921;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:3,212:217:99:4500,525,0 chrXI 36243 . T C 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=3.203;HaplotypeScore=6.1343;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.628;QD=21.50;ReadPosRankSum=1.682;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4450,501,0 chrXI 36249 . C G 4264.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.21;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,206:211:99:4264,492,0 chrXI 36393 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.47;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2190,240,0 chrXI 36452 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.45;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2098,234,0 chrXI 36454 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=22.48;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2011,231,0 chrXI 36537 . C T 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=11.07;ReadPosRankSum=0.742;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:12:110,12,0 chrXI 36689 . T C 1420 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1453,159,0 chrXI 36695 . T C 1321 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.404;QD=17.85;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1354,159,0 chrXI 36777 . A T 1784 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.47;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1817,195,0 chrXI 36900 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.93;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3463,387,0 chrXI 37338 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.39;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3636,420,0 chrXI 37401 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.16;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4189,456,0 chrXI 37498 . C T 4641.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.0737;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.68;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4641,513,0 chrXI 37551 . A G 4211.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.16;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4211,497,0 chrXI 37587 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=226;Dels=0.01;FS=0.000;HaplotypeScore=10.7319;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.047;QD=18.58;ReadPosRankSum=1.685;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:4199,471,0 chrXI 37590 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=19.22;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4344,471,0 chrXI 37740 . T G 5810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=279;Dels=0.00;FS=3.390;HaplotypeScore=16.5225;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.611;QD=20.82;ReadPosRankSum=1.656;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:1,274:279:99:5810,660,0 chrXI 37977 . C T 4730.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.6899;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.00;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4730,531,0 chrXI 37995 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.64;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4189,456,0 chrXI 38222 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=20.59;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3974,432,0 chrXI 38226 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.062;QD=18.89;ReadPosRankSum=1.714;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3702,414,0 chrXI 38351 . A T 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=209;Dels=0.00;FS=2.987;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.699;QD=22.82;ReadPosRankSum=2.403;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4769,525,0 chrXI 39003 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3812,420,0 chrXI 39127 . G C 4141.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.2624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4141,474,0 chrXI 39184 . C G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3983,465,0 chrXI 39666 . T C 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.425;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.9601;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.588;QD=19.64;ReadPosRankSum=-1.177;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4203,460,0 chrXI 39672 . G A 4472.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.7017;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.90;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4472,480,0 chrXI 39711 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=202;Dels=0.00;FS=4.296;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.183;QD=18.56;ReadPosRankSum=1.715;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:3749,438,0 chrXI 39867 . C A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0119;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.88;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3866,432,0 chrXI 40144 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2983,330,0 chrXI 40617 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=158;Dels=0.00;FS=3.038;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.034;QD=19.28;ReadPosRankSum=1.665;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3080,354,0 chrXI 41067 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.95;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4082,456,0 chrXI 41343 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.47;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2910,315,0 chrXI 41369 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.23;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3462,375,0 chrXI 41403 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-1.250;QD=18.25;ReadPosRankSum=1.710;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:2953,336,0 chrXI 41404 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.58;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3024,339,0 chrXI 42021 . A G 2638 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2671,303,0 chrXI 42198 . A T 1609 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1642,177,0 chrXI 42450 . G A 1450 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1483,153,0 chrXI 42676 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.914;QD=22.22;ReadPosRankSum=1.711;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3578,399,0 chrXI 42738 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=189;Dels=0.00;FS=2.791;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.500;QD=20.41;ReadPosRankSum=2.411;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3857,438,0 chrXI 42757 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=21.75;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4197,447,0 chrXI 42771 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.29;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3469,384,0 chrXI 42807 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-1.732;QD=19.73;ReadPosRankSum=1.677;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3689,426,0 chrXI 42834 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=173;Dels=0.00;FS=5.255;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.843;QD=19.08;ReadPosRankSum=3.398;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:4,167:173:99:3300,375,0 chrXI 42835 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=8.150;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.405;QD=19.49;ReadPosRankSum=2.407;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3372,375,0 chrXI 42897 . A G 2772 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.22;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2805,327,0 chrXI 42900 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=17.25;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2949,330,0 chrXI 42936 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.37;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3239,351,0 chrXI 43185 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.273;QD=23.90;ReadPosRankSum=1.713;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4326,489,0 chrXI 43419 . G A 5777.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.27;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5777,622,0 chrXI 43629 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.27;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3094,342,0 chrXI 43630 . C G 3069 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.32;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3102,348,0 chrXI 43668 . A T 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=147;Dels=0.00;FS=3.161;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.624;QD=20.07;ReadPosRankSum=1.709;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2983,333,0 chrXI 43800 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.47;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3108,351,0 chrXI 43830 . A G 2413 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.71;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2446,285,0 chrXI 43835 . T C 2528 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.91;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2561,285,0 chrXI 43854 . T C 2519 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.39;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2552,291,0 chrXI 43946 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.30;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3947,435,0 chrXI 44246 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.688;QD=22.26;ReadPosRankSum=1.708;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3316,375,0 chrXI 44293 . C T 2188 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=17.09;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2221,243,0 chrXI 44298 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.90;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2378,267,0 chrXI 44334 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=17.64;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2626,288,0 chrXI 44336 . A G 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=146;Dels=0.00;FS=19.837;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-2.632;QD=17.68;ReadPosRankSum=3.398;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:2614,291,0 chrXI 44440 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4109,450,0 chrXI 44511 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.67;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4592,513,0 chrXI 44733 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.03;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3480,390,0 chrXI 44796 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.33;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3305,357,0 chrXI 45213 . A T 2670 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.89;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2703,297,0 chrXI 45217 . G T 2558 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.80;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2591,276,0 chrXI 45525 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=192;Dels=0.00;FS=3.032;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.254;QD=21.94;ReadPosRankSum=2.398;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4212,492,0 chrXI 45588 . C A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.98;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4067,453,0 chrXI 45765 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.163;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.490;QD=22.21;ReadPosRankSum=1.684;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3253,363,0 chrXI 46134 . T G 4443.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.8415;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.36;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4443,510,0 chrXI 46275 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.91;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2700,297,0 chrXI 46282 . C T 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.165;QD=20.65;ReadPosRankSum=1.677;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2655,288,0 chrXI 46370 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=22.15;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2602,279,0 chrXI 46376 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=115;Dels=0.00;FS=5.990;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-0.443;QD=19.74;ReadPosRankSum=2.868;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:3,111:115:99:2303,261,0 chrXI 46420 . G C 1974 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=17.02;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2007,231,0 chrXI 46424 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=18.17;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2086,228,0 chrXI 46444 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=17.99;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1940,219,0 chrXI 46458 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.938;HaplotypeScore=3.7150;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-1.599;QD=18.05;ReadPosRankSum=1.699;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1910,210,0 chrXI 46587 . A C 1013 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=-0.527;QD=22.02;ReadPosRankSum=1.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1046,126,0 chrXI 46608 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=21.75;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:60:99:1338,153,0 chrXI 46710 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=4.80;SB=-5.347e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:80,9,0 chrXI 46718 . G A 146.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=8.59;SB=-5.407e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:21:179,21,0 chrXI 46843 . C G 502 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.90;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:60:535,60,0 chrXI 46848 . C G 479 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.81;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:57:512,57,0 chrXI 46850 . T G 458 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.81;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:57:491,57,0 chrXI 46914 . G A 749 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.24;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:782,90,0 chrXI 46927 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.66;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1234,141,0 chrXI 47071 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.489;QD=25.02;ReadPosRankSum=1.706;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3277,363,0 chrXI 47435 . A T 4973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.616;DP=219;Dels=0.00;FS=1.832;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.324;QD=22.71;ReadPosRankSum=2.338;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:5,214:219:99:4973,552,0 chrXI 47705 . T C 4879.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.23;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4879,564,0 chrXI 47924 . G T 4488.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.0867;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.55;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4488,498,0 chrXI 47998 . C A 4955.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.26;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4955,526,0 chrXI 48118 . C A 6372.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.32;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:6372,694,0 chrXI 49705 . C G 2792 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2825,318,0 chrXI 49758 . T C 2437 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.31;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2470,276,0 chrXI 49819 . C T 2133 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2166,237,0 chrXI 50020 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=7.469;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.525;QD=23.52;ReadPosRankSum=1.706;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3232,369,0 chrXI 50112 . C T 2834 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.80;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2867,312,0 chrXI 50257 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.63;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3507,375,0 chrXI 50386 . G T 2783 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.81;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2816,306,0 chrXI 50395 . T G 2551 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.91;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2584,294,0 chrXI 50810 . C T 915 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.33;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:948,105,0 chrXI 50968 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1751,192,0 chrXI 51307 . T C 2182 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.98;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2215,246,0 chrXI 51512 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=105;Dels=0.00;FS=12.452;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.048;QD=24.46;ReadPosRankSum=2.933;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2601,285,0 chrXI 51558 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.43;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2574,273,0 chrXI 51964 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=133;Dels=0.00;FS=3.505;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.986;QD=23.36;ReadPosRankSum=1.652;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:3140,354,0 chrXI 52588 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=144;Dels=0.00;FS=2.515;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.133;QD=23.06;ReadPosRankSum=2.923;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3321,369,0 chrXI 53003 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4373,471,0 chrXI 53209 . T C 2737 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.25;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2770,303,0 chrXI 53295 . A G 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.217;QD=18.73;ReadPosRankSum=1.705;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2430,276,0 chrXI 53379 . T C 945 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.87;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:978,114,0 chrXI 53539 . C T 1746 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1779,195,0 chrXI 53908 . G A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.37;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3740,408,0 chrXI 53931 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.358;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.777;QD=19.55;ReadPosRankSum=1.710;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3083,348,0 chrXI 54204 . T C 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=215;Dels=0.00;FS=6.719;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.361;QD=22.80;ReadPosRankSum=2.415;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:4903,561,0 chrXI 54420 . A G 2854 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.24;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2887,327,0 chrXI 55108 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.28;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3587,399,0 chrXI 55815 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=4.387;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.210;QD=23.41;ReadPosRankSum=1.672;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4050,447,0 chrXI 56082 . C T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4319,489,0 chrXI 56302 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4024,432,0 chrXI 56664 . T C 5125.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.9650;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.09;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5125,579,0 chrXI 56919 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.4992;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.99;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3695,417,0 chrXI 57354 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.67;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3627,399,0 chrXI 57957 . G C 4754.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.19;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4754,534,0 chrXI 58239 . G A 5035.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.86;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5035,549,0 chrXI 58428 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.90;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3877,441,0 chrXI 59004 . T A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.32;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3660,396,0 chrXI 59136 . A C 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=212;Dels=0.00;FS=3.094;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.584;QD=20.72;ReadPosRankSum=1.716;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4392,495,0 chrXI 59814 . A G 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=199;Dels=0.00;FS=9.863;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.717;QD=19.95;ReadPosRankSum=2.201;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:3,192:199:99:3970,443,0 chrXI 59823 . A G 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.611;QD=21.30;ReadPosRankSum=1.632;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4410,495,0 chrXI 60015 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.90;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3373,369,0 chrXI 60173 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.37;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2464,264,0 chrXI 60459 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=163;Dels=0.00;FS=7.378;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.912;QD=22.30;ReadPosRankSum=2.389;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3635,414,0 chrXI 61338 . G C 3165 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7627;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.61;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3198,363,0 chrXI 61541 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.53;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3257,363,0 chrXI 62229 . T C 4536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.113;QD=24.65;ReadPosRankSum=1.713;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4536,516,0 chrXI 62547 . C T 5357.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.41;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5357,606,0 chrXI 62706 . A T 6807.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=11.7319;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.49;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6807,747,0 chrXI 62759 . T C 6074.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=12.7101;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.01;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:0,261:264:99:6074,669,0 chrXI 62943 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.4322;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.057;QD=21.46;ReadPosRankSum=1.713;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3948,441,0 chrXI 63248 . G T 3046 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.1914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3079,345,0 chrXI 63297 . G A 3584.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2693;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.97;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3584,399,0 chrXI 63525 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.329;QD=21.93;ReadPosRankSum=1.618;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2686,312,0 chrXI 63630 . A C 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=169;Dels=0.00;FS=5.933;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.923;QD=22.24;ReadPosRankSum=2.923;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3759,432,0 chrXI 63649 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.53;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3445,399,0 chrXI 63662 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.53;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3174,348,0 chrXI 63772 . A C 2767 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=22.50;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2800,321,0 chrXI 63876 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=22.65;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1913,207,0 chrXI 63934 . T C 2699 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=23.47;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2732,303,0 chrXI 63975 . G A 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=84;Dels=0.00;FS=21.282;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;MQRankSum=0.668;QD=15.55;ReadPosRankSum=0.853;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:13,71:84:88:1339,88,0 chrXI 63984 . C T 801.45 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.312;DP=69;Dels=0.00;FS=18.485;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;MQRankSum=0.569;QD=11.62;ReadPosRankSum=-1.327;SB=-4.865e+02 GT:AD:DP:GQ:PL 1/1:14,54:69:7:833,7,0 chrXI 63999 . C G 408.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.729;DP=48;Dels=0.00;FS=14.703;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=0;MQRankSum=-0.450;QD=8.50;ReadPosRankSum=-0.701;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:20,28:48:99:438,0,108 chrXI 64001 . G T 366.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.734;DP=46;Dels=0.00;FS=9.161;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=0;MQRankSum=-1.850;QD=7.96;ReadPosRankSum=-0.875;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:20,26:46:99:396,0,114 chrXI 64017 . A C 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=0;MQRankSum=-1.386;QD=3.23;ReadPosRankSum=0.726;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,10:30:99:127,0,150 chrXI 64023 . A C 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.345;QD=3.41;ReadPosRankSum=2.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,8:27:99:122,0,150 chrXI 64025 . T G 88.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.292;QD=3.26;ReadPosRankSum=2.097;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,8:27:99:118,0,161 chrXI 64032 . G C 255 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.75;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:288,33,0 chrXI 64101 . A C 98.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.38;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:131,15,0 chrXI 64104 . T C 100.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.71;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:133,15,0 chrXI 64197 . C T 76.51 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:109,12,0 chrXI 64203 . T C 73.51 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.34;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:106,12,0 chrXI 64212 . C A 71.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.131;QD=3.11;ReadPosRankSum=1.583;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:12:104,12,0 chrXI 64218 . T C 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.529;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.7518;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.289;QD=2.34;ReadPosRankSum=4.416;SB=2.49 GT:AD:DP:GQ:PL 1/1:10,21:31:12:105,12,0 chrXI 64221 . C T 78.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.7518;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.621;QD=2.53;ReadPosRankSum=1.509;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,30:31:12:111,12,0 chrXI 64224 . C T 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.967;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.3292;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.095;QD=2.32;ReadPosRankSum=4.258;SB=2.49 GT:AD:DP:GQ:PL 1/1:11,22:33:12:109,12,0 chrXI 64230 . T C 73.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.644;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=18.4447;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.262;QD=1.93;ReadPosRankSum=4.345;SB=2.49 GT:AD:DP:GQ:PL 1/1:17,21:38:12:106,12,0 chrXI 64236 . C A,G 137.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.301;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=29.00;MQ0=0;MQRankSum=1.378;QD=3.19;ReadPosRankSum=-0.237;SB=29.99 GT:AD:DP:GQ:PL 1/2:11,11,21:43:78:197,93,78,104,0,92 chrXI 64242 . T C 265 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.526;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=75.5713;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.217;QD=6.02;ReadPosRankSum=-1.735;SB=3.00 GT:AD:DP:GQ:PL 1/1:11,33:44:36:298,36,0 chrXI 64260 . C G 219.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.786;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.101;QD=5.62;ReadPosRankSum=5.182;SB=-6.526e-03 GT:AD:DP:GQ:PL 0/1:15,24:39:55:249,0,55 chrXI 64262 . T G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=19.5107;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.145;QD=0.59;ReadPosRankSum=-2.543;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,12:44:56:56,0,272 chrXI 64266 . T C 346 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.902;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=19.5107;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.983;QD=8.05;ReadPosRankSum=2.530;SB=0.061 GT:AD:DP:GQ:PL 1/1:4,39:43:42:379,42,0 chrXI 64278 . T C 383 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=10.5039;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.225;QD=8.91;ReadPosRankSum=1.648;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,40:43:48:416,48,0 chrXI 64284 . C G 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.335;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.991;QD=1.82;ReadPosRankSum=-4.835;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,21:45:99:112,0,255 chrXI 64286 . T G 222.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.125;QD=4.93;ReadPosRankSum=3.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,24:45:99:252,0,172 chrXI 64299 . C T 575 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9195;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=1.455;QD=11.50;ReadPosRankSum=1.525;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,49:50:66:608,66,0 chrXI 64302 . T A,C 501.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.416;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.81;MQ0=0;MQRankSum=-0.139;QD=10.02;ReadPosRankSum=0.901;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:1,24,25:50:99:561,276,240,285,0,249 chrXI 64308 . C A 229.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.8776;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=0;MQRankSum=1.984;QD=4.87;ReadPosRankSum=-4.498;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,19:47:99:259,0,266 chrXI 64310 . T G 234.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.7194;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=1.870;QD=4.88;ReadPosRankSum=5.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,27:48:99:264,0,240 chrXI 64320 . C T 338.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.631;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=0;MQRankSum=-1.149;QD=7.51;ReadPosRankSum=4.635;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,34:45:99:368,0,129 chrXI 64323 . C T 359.05 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.753;DP=47;Dels=0.02;FS=3.524;HaplotypeScore=6.8580;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=0;MQRankSum=-0.884;QD=7.64;ReadPosRankSum=4.246;SB=-4.691e+01 GT:AD:DP:GQ:PL 0/1:8,38:46:17:389,0,17 chrXI 64326 . T A 462 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.027;DP=46;Dels=0.00;FS=6.825;HaplotypeScore=2.9765;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;MQRankSum=-0.996;QD=10.04;ReadPosRankSum=2.020;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:2,44:46:57:495,57,0 chrXI 64329 . C T 534 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.389;DP=49;Dels=0.00;FS=7.871;HaplotypeScore=2.9765;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;MQRankSum=-1.732;QD=10.90;ReadPosRankSum=0.955;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:66:567,66,0 chrXI 64332 . C A 675 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.1312;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=11.44;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:84:708,84,0 chrXI 64527 . A G 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.8532;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=0.514;QD=21.21;ReadPosRankSum=1.705;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2790,321,0 chrXI 64560 . A G 2661 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=18.87;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2694,315,0 chrXI 64563 . A T 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.136;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=0.495;QD=18.62;ReadPosRankSum=1.707;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2658,303,0 chrXI 64590 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.712;QD=18.35;ReadPosRankSum=1.661;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2712,309,0 chrXI 64671 . T G 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.018;QD=22.35;ReadPosRankSum=1.696;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2201,249,0 chrXI 65198 . T C 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=135;Dels=0.00;FS=2.894;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.375;QD=22.42;ReadPosRankSum=2.377;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3060,354,0 chrXI 65339 . T C 2783 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3570;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.33;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2816,333,0 chrXI 66027 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.1013;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.46;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3659,399,0 chrXI 66073 . A C 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=166;Dels=0.00;FS=3.014;HaplotypeScore=7.4730;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.303;QD=22.86;ReadPosRankSum=1.813;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3794,423,0 chrXI 66130 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.54;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3404,363,0 chrXI 66233 . A T 2113 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.34;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2146,240,0 chrXI 66243 . C G 2201 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.37;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2234,252,0 chrXI 66392 . C G 2176 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=18.5641;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.43;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2209,252,0 chrXI 66546 . A G 3288.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.4524;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.83;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3288,369,0 chrXI 66663 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.09;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3480,393,0 chrXI 66675 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=178;Dels=0.00;FS=3.590;HaplotypeScore=3.6048;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.827;QD=20.54;ReadPosRankSum=1.712;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3656,417,0 chrXI 66702 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=3.066;HaplotypeScore=6.0020;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=-0.777;QD=22.00;ReadPosRankSum=1.665;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3454,369,0 chrXI 66804 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.96;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4456,486,0 chrXI 66860 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.977;QD=21.10;ReadPosRankSum=1.714;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,187:192:99:4051,453,0 chrXI 66882 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.8990;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.48;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4002,441,0 chrXI 67050 . G A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.40;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4368,468,0 chrXI 67187 . A G 5443.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.77;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5443,606,0 chrXI 67215 . G A 5845.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=7.2301;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.47;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5845,645,0 chrXI 67332 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.73;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4086,474,0 chrXI 67386 . G C 3859.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.5405;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.75;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3859,432,0 chrXI 67440 . A C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=1.336;QD=20.34;ReadPosRankSum=1.673;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3579,408,0 chrXI 67619 . A G 1016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=-0.157;QD=23.09;ReadPosRankSum=1.654;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1049,120,0 chrXI 67635 . C T 562 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=22.48;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:66:595,66,0 chrXI 67641 . T C 548 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=22.83;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:69:581,69,0 chrXI 67672 . G A 666 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.81;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:78:699,78,0 chrXI 67691 . A C 687 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=18.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:84:720,84,0 chrXI 67740 . C G 714 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=8.6583;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=15.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:84:747,84,0 chrXI 67755 . G T 421 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=13.16;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,31:32:51:454,51,0 chrXI 67783 . T C 123.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;DP=36;Dels=0.00;FS=25.908;HaplotypeScore=14.3026;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=1;MQRankSum=0.880;QD=3.42;ReadPosRankSum=-0.535;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:18,18:36:62:153,0,62 chrXI 67790 . T C 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=36;Dels=0.00;FS=33.829;HaplotypeScore=14.0456;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=1;MQRankSum=1.562;QD=0.92;ReadPosRankSum=-1.342;SB=-6.508e-03 GT:AD:DP:GQ:PL 0/1:26,10:36:63:63,0,81 chrXI 67802 . G A 517 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=15.21;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:63:550,63,0 chrXI 67816 . G A 744 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=37.5266;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=18.15;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:87:777,87,0 chrXI 67844 . G A 870 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=18.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:903,102,0 chrXI 67862 . C G 916 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=18.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:949,108,0 chrXI 67872 . C G 898 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=18.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:931,105,0 chrXI 67884 . A G 445 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=12.71;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:54:478,54,0 chrXI 67929 . T C 46.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.74;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:79,9,0 chrXI 67935 . T A 45.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:78,9,0 chrXI 67941 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=4.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrXI 67992 . T C 408 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=13.60;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:51:441,51,0 chrXI 67998 . C T 592 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=16.00;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:72:625,72,0 chrXI 68184 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;QD=26.15;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2674,288,0 chrXI 68250 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=24.74;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2383,270,0 chrXI 68337 . G A 2363 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.08;MQ0=0;QD=15.65;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2396,264,0 chrXI 68360 . G T 107.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.134;DP=161;Dels=0.00;FS=33.053;HaplotypeScore=936.5527;MLEAC=1;MLEAF=0.500;MQ=30.89;MQ0=0;MQRankSum=0.672;QD=0.66;ReadPosRankSum=-4.463;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,20:161:99:137,0,603 chrXI 68368 . G A 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;DP=151;Dels=0.00;FS=14.627;HaplotypeScore=674.1435;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=0;MQRankSum=0.169;QD=0.21;ReadPosRankSum=-4.845;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:142,9:151:61:61,0,239 chrXI 68369 . G T 381 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=578.4591;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=2.51;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:45:414,45,0 chrXI 68377 . G A 1600 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=161;Dels=0.00;FS=2.074;HaplotypeScore=102.7397;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;MQRankSum=0.944;QD=9.94;ReadPosRankSum=2.956;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:1633,141,0 chrXI 68447 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=3.029;HaplotypeScore=144.7821;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-0.826;QD=13.63;ReadPosRankSum=2.421;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:2363,270,0 chrXI 68563 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=172;Dels=0.00;FS=7.998;HaplotypeScore=9.7842;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;MQRankSum=-0.296;QD=21.95;ReadPosRankSum=2.045;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:3775,420,0 chrXI 68580 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=157;Dels=0.00;FS=7.835;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;MQRankSum=-1.495;QD=19.67;ReadPosRankSum=2.356;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3121,372,0 chrXI 68640 . C G 3522.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.02;FS=0.000;HaplotypeScore=22.9412;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=17.70;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3522,396,0 chrXI 68643 . A C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=200;Dels=0.00;FS=13.470;HaplotypeScore=22.1525;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;MQRankSum=0.190;QD=16.65;ReadPosRankSum=3.416;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:4,194:200:99:3329,398,0 chrXI 68691 . A C 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=259;Dels=0.00;FS=4.737;HaplotypeScore=18.2254;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-1.353;QD=18.17;ReadPosRankSum=1.651;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,255:259:99:4707,540,0 chrXI 68793 . T C 1259 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=3.680;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;MQRankSum=-0.742;QD=9.33;ReadPosRankSum=1.706;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:1292,153,0 chrXI 68799 . T C 1603 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.514;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;MQRankSum=-0.807;QD=10.76;ReadPosRankSum=1.708;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:1636,183,0 chrXI 68802 . G A 1605 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3647;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=10.22;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,151:157:99:1638,186,0 chrXI 68838 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=18.58;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3456,384,0 chrXI 68859 . G A 4808.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=19.47;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4808,531,0 chrXI 68895 . G A 6613.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.27;SB=-3.388e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:6613,720,0 chrXI 68934 . G A 6480.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=25.2378;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.67;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,297:299:99:6480,723,0 chrXI 69000 . A G 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=243;Dels=0.00;FS=8.983;HaplotypeScore=19.5934;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.706;QD=21.83;ReadPosRankSum=2.409;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:2,239:243:99:5305,618,0 chrXI 69070 . A T 5464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=268;Dels=0.00;FS=7.679;HaplotypeScore=12.0516;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.360;QD=20.39;ReadPosRankSum=2.404;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:5464,612,0 chrXI 69087 . A C 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=241;Dels=0.00;FS=3.490;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.659;QD=18.36;ReadPosRankSum=1.718;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:4425,507,0 chrXI 69153 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=20.6968;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.46;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4120,453,0 chrXI 69279 . C T 5139.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=23.5143;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.89;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5139,573,0 chrXI 69417 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.13;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3804,444,0 chrXI 69498 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.36;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4248,456,0 chrXI 69630 . A G 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=241;Dels=0.00;FS=4.937;HaplotypeScore=10.3574;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.433;QD=22.00;ReadPosRankSum=1.703;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:5302,624,0 chrXI 69662 . T C 4865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=221;Dels=0.00;FS=2.554;HaplotypeScore=15.1254;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.466;QD=22.01;ReadPosRankSum=2.813;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:3,217:221:99:4865,561,0 chrXI 69696 . G A 6055.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.38;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6055,675,0 chrXI 69954 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.9915;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.80;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3940,432,0 chrXI 69964 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=206;Dels=0.00;FS=8.977;HaplotypeScore=12.5964;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.904;QD=18.62;ReadPosRankSum=3.383;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:4,199:206:99:3836,444,0 chrXI 70228 . T C 2516 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.8567;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.62;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2549,297,0 chrXI 70422 . A G 746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=39;Dels=0.03;FS=6.767;HaplotypeScore=30.8830;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.365;QD=19.13;ReadPosRankSum=1.641;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:87:779,87,0 chrXI 70540 . A T 1662 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.04;FS=0.000;HaplotypeScore=10.2212;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.09;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1695,183,0 chrXI 70579 . A C 1608 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=60.3861;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.62;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1641,186,0 chrXI 70690 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.985;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.843;QD=19.11;ReadPosRankSum=2.417;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2957,348,0 chrXI 70692 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.86;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3204,345,0 chrXI 70711 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6706;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.36;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2604,285,0 chrXI 70841 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.054;QD=19.62;ReadPosRankSum=1.689;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3212,360,0 chrXI 71068 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.99;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3678,411,0 chrXI 71149 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=17.2999;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.05;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3064,333,0 chrXI 71199 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=174;Dels=0.00;FS=5.454;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-2.535;QD=16.49;ReadPosRankSum=2.959;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:3,168:174:99:2902,324,0 chrXI 71203 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-0.343;QD=15.19;ReadPosRankSum=1.713;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:2736,306,0 chrXI 71211 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=16.69;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3254,360,0 chrXI 71541 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.5430;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.22;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3467,384,0 chrXI 71901 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.83;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3311,357,0 chrXI 71930 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.40;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3072,327,0 chrXI 72189 . A G 2567 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.57;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2600,294,0 chrXI 72294 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.60;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2937,330,0 chrXI 72330 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.6820;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.712;QD=19.66;ReadPosRankSum=1.705;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2589,288,0 chrXI 72431 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.234;DP=167;Dels=0.00;FS=3.715;HaplotypeScore=6.7387;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.545;QD=22.80;ReadPosRankSum=0.591;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3808,395,0 chrXI 72462 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=175;Dels=0.00;FS=7.983;HaplotypeScore=12.3973;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.843;QD=20.94;ReadPosRankSum=3.369;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:4,169:174:99:3665,420,0 chrXI 72570 . A G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=140;Dels=0.00;FS=5.610;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.525;QD=19.53;ReadPosRankSum=2.777;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2767,312,0 chrXI 72594 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.77;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2544,279,0 chrXI 72614 . T C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=4.656;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.105;QD=18.03;ReadPosRankSum=1.709;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2737,321,0 chrXI 72679 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.44;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3523,375,0 chrXI 73029 . T A 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=3.020;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.040;QD=24.33;ReadPosRankSum=2.417;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3698,411,0 chrXI 73164 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=207;Dels=0.00;FS=3.002;HaplotypeScore=7.3433;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.014;QD=22.45;ReadPosRankSum=2.378;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4648,522,0 chrXI 73173 . A G 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=199;Dels=0.00;FS=6.039;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.741;QD=21.13;ReadPosRankSum=2.944;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4205,480,0 chrXI 73235 . A G 3159 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.5571;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.38;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3192,357,0 chrXI 73263 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=3.508;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=1.357;QD=20.94;ReadPosRankSum=1.688;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3350,390,0 chrXI 73279 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.60;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3672,393,0 chrXI 73320 . T C 4345.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.99;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4345,501,0 chrXI 73515 . A G 4743.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.1219;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.99;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4743,552,0 chrXI 73548 . C A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.91;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4392,489,0 chrXI 73560 . G A 4427.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.08;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4427,471,0 chrXI 73911 . C G 3124 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.11;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3157,360,0 chrXI 73964 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.85;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3410,378,0 chrXI 74052 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.027;QD=19.90;ReadPosRankSum=1.705;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2600,300,0 chrXI 74086 . C T 2067 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=17.52;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2100,228,0 chrXI 74091 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=15.87;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1858,201,0 chrXI 74103 . C A 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=95.2378;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;MQRankSum=-0.755;QD=15.03;ReadPosRankSum=0.459;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1791,195,0 chrXI 74144 . A T 2168 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=17.21;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2201,243,0 chrXI 74163 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=19.42;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2461,279,0 chrXI 74329 . T A 1277 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=21.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1310,141,0 chrXI 74375 . C G 988 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;QD=19.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1021,114,0 chrXI 74429 . C T 183.03 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=18.30;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:216,24,0 chrXI 74491 . T A 256 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;QD=21.33;SB=-5.500e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:289,33,0 chrXI 74603 . A C 220 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=18.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:30:253,30,0 chrXI 74756 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=21.38;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1273,138,0 chrXI 75787 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=3.206;HaplotypeScore=8.8077;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.357;QD=22.51;ReadPosRankSum=1.707;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3095,357,0 chrXI 76124 . A G 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=4.381;HaplotypeScore=12.0571;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.311;QD=22.65;ReadPosRankSum=1.713;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4168,494,0 chrXI 76804 . C T 4820.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.29;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4820,534,0 chrXI 76914 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=4.653;HaplotypeScore=6.9016;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.679;QD=22.16;ReadPosRankSum=1.694;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4011,453,0 chrXI 77035 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=156;Dels=0.00;FS=10.064;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.768;QD=22.12;ReadPosRankSum=2.386;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3451,384,0 chrXI 77172 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.71;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2655,294,0 chrXI 77204 . A C 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.529;QD=21.92;ReadPosRankSum=1.696;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,94:98:99:2181,246,0 chrXI 77534 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.7334;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.34;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3888,435,0 chrXI 77759 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.22;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3924,423,0 chrXI 77827 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=3.014;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.229;QD=22.97;ReadPosRankSum=2.290;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3226,357,0 chrXI 77856 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.76;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2840,309,0 chrXI 78002 . T C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.261;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.180;QD=23.34;ReadPosRankSum=1.704;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2950,324,0 chrXI 78194 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3006,321,0 chrXI 78224 . A G 3039 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.68;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3072,348,0 chrXI 78639 . A G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.978;QD=19.00;ReadPosRankSum=2.340;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2161,240,0 chrXI 78694 . T C 2147 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.2187;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2180,243,0 chrXI 78708 . A T 2118 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2151,240,0 chrXI 78869 . G T 1032 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1065,120,0 chrXI 79002 . G C 1557 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.71;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1590,174,0 chrXI 79169 . G T 1937 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1970,219,0 chrXI 79540 . A G 2598 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.06;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2631,294,0 chrXI 79688 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.55;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3321,369,0 chrXI 79772 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8231;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.700;QD=24.31;ReadPosRankSum=1.708;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3452,390,0 chrXI 79829 . C G 2568 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.22;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2601,294,0 chrXI 79835 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.32;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2464,270,0 chrXI 79898 . G T 2512 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.66;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2545,273,0 chrXI 80289 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.93;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2555,288,0 chrXI 80724 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.25;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4268,462,0 chrXI 80751 . C A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.43;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3811,426,0 chrXI 80805 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.00;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3335,369,0 chrXI 80854 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=140;Dels=0.00;FS=2.969;HaplotypeScore=12.1594;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.448;QD=19.58;ReadPosRankSum=2.415;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2774,327,0 chrXI 80953 . C T 3193 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.43;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3226,351,0 chrXI 81202 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.43;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3408,381,0 chrXI 81244 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.38;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3785,435,0 chrXI 81400 . A C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-1.365;QD=19.89;ReadPosRankSum=1.663;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3057,351,0 chrXI 81406 . T C 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=3.471;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-1.174;QD=19.23;ReadPosRankSum=1.709;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2899,342,0 chrXI 81504 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3278;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=19.73;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3230,357,0 chrXI 81518 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;MQRankSum=-0.979;QD=18.24;ReadPosRankSum=1.711;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3006,336,0 chrXI 81526 . C A 2747 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=16.35;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2780,312,0 chrXI 81532 . T C 2786 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=16.10;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2819,324,0 chrXI 81670 . T C 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=2.640;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.077;QD=20.97;ReadPosRankSum=2.408;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3712,426,0 chrXI 81688 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=19.92;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3885,432,0 chrXI 81709 . T A 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=201;Dels=0.00;FS=5.466;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=-1.815;QD=16.65;ReadPosRankSum=2.935;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:3346,372,0 chrXI 81718 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.043;DP=196;Dels=0.00;FS=4.058;HaplotypeScore=8.7229;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=1.485;QD=16.16;ReadPosRankSum=1.661;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3201,372,0 chrXI 81758 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.240;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.054;QD=17.81;ReadPosRankSum=1.714;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3455,411,0 chrXI 81976 . A G 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=219;Dels=0.00;FS=5.881;HaplotypeScore=10.6074;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.319;QD=20.96;ReadPosRankSum=2.940;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:3,214:219:99:4590,519,0 chrXI 82057 . A G 5015.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.9297;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.16;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5015,561,0 chrXI 82454 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4070;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=17.74;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3300,369,0 chrXI 82462 . A G 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=179;Dels=0.00;FS=2.373;HaplotypeScore=9.0572;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.122;QD=17.60;ReadPosRankSum=3.362;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3184,357,0 chrXI 82777 . G T 1755 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=25.07;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1788,195,0 chrXI 83196 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.924;QD=23.43;ReadPosRankSum=1.690;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3843,441,0 chrXI 83481 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.00;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2994,339,0 chrXI 83535 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=22.35;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3419,375,0 chrXI 83549 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.82;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3317,372,0 chrXI 83551 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=22.34;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3373,369,0 chrXI 83619 . T C 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=132;Dels=0.00;FS=8.712;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.804;QD=21.67;ReadPosRankSum=2.393;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2893,321,0 chrXI 83666 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=77.0963;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.61;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2238,252,0 chrXI 83924 . A C 696 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;MQRankSum=-1.648;QD=16.98;ReadPosRankSum=1.648;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,40:41:84:729,84,0 chrXI 83934 . C T 531 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=16.09;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:60:564,60,0 chrXI 83983 . A G 806 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=17.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:93:839,93,0 chrXI 84009 . C T 1327 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=21.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1360,150,0 chrXI 84057 . G A 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.0810;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=0.490;QD=20.82;ReadPosRankSum=1.977;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1553,153,0 chrXI 84166 . G T 1606 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=20.86;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1639,183,0 chrXI 84171 . C G 1606 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=21.13;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1639,189,0 chrXI 84184 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=22.61;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1706,186,0 chrXI 84187 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=20.33;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1558,177,0 chrXI 84308 . A T 312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.129;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=79.2890;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;MQRankSum=-0.215;QD=3.39;ReadPosRankSum=4.358;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:9,81:90:39:345,39,0 chrXI 84327 . G T 1659 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=18.23;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1692,183,0 chrXI 84360 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=19.14;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1985,213,0 chrXI 84384 . A G 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=92;Dels=0.00;FS=8.728;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=0.174;QD=17.78;ReadPosRankSum=2.396;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1669,192,0 chrXI 84401 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=18.34;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1647,189,0 chrXI 84454 . A G 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.731;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=1.039;QD=20.22;ReadPosRankSum=1.651;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1752,195,0 chrXI 84589 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.83;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3067,336,0 chrXI 84611 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.351;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.5008;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.102;QD=22.12;ReadPosRankSum=0.147;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3407,362,0 chrXI 84826 . G A 5175.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.5693;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.52;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5175,570,0 chrXI 84965 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.17;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4403,504,0 chrXI 85027 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=2.884;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.184;QD=21.38;ReadPosRankSum=2.405;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3528,396,0 chrXI 85122 . T C 4530.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=23.35;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4530,516,0 chrXI 85468 . C G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.73;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3260,378,0 chrXI 85567 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=99;Dels=0.00;FS=6.066;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.244;QD=22.43;ReadPosRankSum=2.299;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2254,258,0 chrXI 85801 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.42;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2303,261,0 chrXI 85821 . T C 1782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.433;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.125;QD=18.18;ReadPosRankSum=1.518;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1815,198,0 chrXI 85837 . T G 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.896;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.050;QD=16.66;ReadPosRankSum=1.598;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:1782,201,0 chrXI 85942 . C A 2217 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2250,249,0 chrXI 87002 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3432,384,0 chrXI 87043 . G C 3042 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.98;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3075,351,0 chrXI 87119 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2820,312,0 chrXI 87176 . T A 2298 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2331,264,0 chrXI 87422 . T G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.70;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3257,375,0 chrXI 87650 . C T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.01;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3631,405,0 chrXI 87764 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3434,378,0 chrXI 88322 . T C 3019 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3052,348,0 chrXI 88715 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.10;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1784,198,0 chrXI 88724 . G A 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.030;QD=20.21;ReadPosRankSum=0.047;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1549,154,0 chrXI 89063 . A T 1622 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.02;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1655,186,0 chrXI 89072 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.54;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1635,183,0 chrXI 89124 . A G 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=76;Dels=0.00;FS=2.770;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.925;QD=19.79;ReadPosRankSum=2.320;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1537,180,0 chrXI 89198 . A T 2390 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.16;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2423,264,0 chrXI 89262 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=13.89;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1269,138,0 chrXI 89273 . A G 1183 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=81.4016;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=13.76;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1216,132,0 chrXI 89285 . T C 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;MQRankSum=-1.557;QD=10.25;ReadPosRankSum=1.697;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1048,123,0 chrXI 89332 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.627;DP=153;Dels=0.00;FS=2.333;HaplotypeScore=3.6354;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-1.719;QD=17.67;ReadPosRankSum=3.792;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:5,148:153:99:2736,309,0 chrXI 89356 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.98;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3677,399,0 chrXI 89367 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.352;QD=18.93;ReadPosRankSum=2.413;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3767,441,0 chrXI 89443 . C A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=22.4131;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.00;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4368,483,0 chrXI 89534 . A T 4822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.7549;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=1.487;QD=21.24;ReadPosRankSum=0.189;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:4822,519,0 chrXI 89554 . C T 4759.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.42;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4759,543,0 chrXI 89684 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.400;QD=20.53;ReadPosRankSum=2.422;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3634,408,0 chrXI 89886 . A G 4452.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.3269;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.60;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4452,498,0 chrXI 90346 . T C 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.666;QD=22.53;ReadPosRankSum=1.682;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4754,546,0 chrXI 90552 . A G 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.0876;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.364;QD=22.72;ReadPosRankSum=1.682;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4748,531,0 chrXI 90600 . G C 4690.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.42;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4690,546,0 chrXI 90681 . C T 5367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.201;DP=235;Dels=0.00;FS=3.417;HaplotypeScore=18.1567;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.216;QD=22.84;ReadPosRankSum=-0.980;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5367,591,0 chrXI 90778 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=187;Dels=0.00;FS=9.900;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.780;QD=21.25;ReadPosRankSum=2.812;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:3973,459,0 chrXI 90991 . A G 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=3.622;HaplotypeScore=15.4539;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.295;QD=23.40;ReadPosRankSum=1.662;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4656,543,0 chrXI 91036 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.2313;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.97;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3627,426,0 chrXI 91192 . G A 4590.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.9109;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.68;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4590,525,0 chrXI 91339 . G A 5090.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1196;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.72;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5090,547,0 chrXI 91402 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4708,531,0 chrXI 91565 . C T 3890.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.1294;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.58;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3890,420,0 chrXI 91766 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.84;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2326,258,0 chrXI 91773 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.36;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2110,234,0 chrXI 91796 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.63;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1654,192,0 chrXI 91825 . G C 1654 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=17.78;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1687,192,0 chrXI 92069 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.52;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2099,240,0 chrXI 92137 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.300;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=1.564;QD=21.80;ReadPosRankSum=1.648;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2758,309,0 chrXI 92158 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=23.50;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3159,339,0 chrXI 92193 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4039;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=20.73;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2998,339,0 chrXI 92202 . A G 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=132;Dels=0.00;FS=2.592;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=-0.687;QD=19.73;ReadPosRankSum=2.245;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2638,300,0 chrXI 92251 . G T 1552 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=16.87;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1585,177,0 chrXI 92252 . T A 1684 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=18.92;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1717,189,0 chrXI 92272 . C A 1187 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=71.9129;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=14.13;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1220,138,0 chrXI 92313 . T C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.033;QD=17.87;ReadPosRankSum=1.699;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1927,219,0 chrXI 92330 . G T 2390 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.82;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2423,264,0 chrXI 92358 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=151;Dels=0.00;FS=13.717;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.336;QD=20.19;ReadPosRankSum=2.953;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3081,363,0 chrXI 92395 . T C 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.073;QD=20.95;ReadPosRankSum=1.708;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3008,342,0 chrXI 92422 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=20.08;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2664,294,0 chrXI 92424 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=19.45;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2561,285,0 chrXI 92441 . G T 2043 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=17.46;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2076,228,0 chrXI 92500 . T G 1649 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=17.54;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1682,195,0 chrXI 92507 . G T 1634 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.57;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1667,183,0 chrXI 92653 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=6.9334;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=16.97;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1492,168,0 chrXI 92948 . A T 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=153;Dels=0.00;FS=7.474;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.490;QD=22.01;ReadPosRankSum=2.369;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3367,375,0 chrXI 93041 . G A 4463.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.0891;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.20;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4463,492,0 chrXI 93349 . G T 4376.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.2087;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.56;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4376,483,0 chrXI 93445 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3066;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=16.80;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3007,339,0 chrXI 93852 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.486;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.705;QD=21.29;ReadPosRankSum=1.673;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2566,300,0 chrXI 94372 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.04;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1857,204,0 chrXI 94383 . T C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.942;QD=18.58;ReadPosRankSum=2.400;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1854,213,0 chrXI 94473 . T C 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.611;DP=132;Dels=0.00;FS=2.560;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.038;QD=18.90;ReadPosRankSum=1.557;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2528,265,0 chrXI 94669 . T A 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=201;Dels=0.00;FS=2.954;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-2.083;QD=22.88;ReadPosRankSum=2.352;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4598,513,0 chrXI 94945 . C A 4859.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.25;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4859,543,0 chrXI 94985 . C T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.34;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4021,438,0 chrXI 95179 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.32;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2805,303,0 chrXI 95374 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.50;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3758,417,0 chrXI 95608 . T A 2642 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4442;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.66;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2675,297,0 chrXI 95620 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=13.2252;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.54;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2744,309,0 chrXI 96045 . C G 5026.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.01;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:5026,582,0 chrXI 96552 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.02;FS=0.000;HaplotypeScore=5.2651;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.37;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2063,231,0 chrXI 96900 . C T 2669 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9096;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.37;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2702,291,0 chrXI 96914 . T C 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.126;QD=18.35;ReadPosRankSum=1.607;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2583,288,0 chrXI 97036 . G C 3477.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3477,399,0 chrXI 97113 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.247;QD=22.72;ReadPosRankSum=1.685;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3385,387,0 chrXI 97347 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.05;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3412,369,0 chrXI 97362 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.38;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3095,348,0 chrXI 97380 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.13;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2921,318,0 chrXI 97410 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=17.06;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2404,261,0 chrXI 97535 . G T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.39;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4093,453,0 chrXI 97582 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.90;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4111,447,0 chrXI 97680 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.67;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3605,417,0 chrXI 97716 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.9781;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.55;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4263,474,0 chrXI 97758 . G A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4127,462,0 chrXI 97897 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4593;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.29;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3322,378,0 chrXI 97953 . G A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1515;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=23.68;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4096,444,0 chrXI 98109 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=21.65;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3508,393,0 chrXI 98162 . T A 1909 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=20.75;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1942,213,0 chrXI 98172 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=18.39;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1798,210,0 chrXI 98175 . G C 1764 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=18.57;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1797,213,0 chrXI 98234 . G C 1510 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=18.64;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1543,177,0 chrXI 98240 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.33;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1481,165,0 chrXI 98324 . A G 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;MQRankSum=-0.467;QD=19.71;ReadPosRankSum=1.677;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1275,147,0 chrXI 98325 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;QD=20.95;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1332,147,0 chrXI 98422 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=25.46;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2070,228,0 chrXI 98452 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=24.48;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2922,318,0 chrXI 98597 . T A 2700 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.29;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2733,303,0 chrXI 98608 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=19.08;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2838,306,0 chrXI 98619 . G T 3079 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=18.22;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3112,351,0 chrXI 98634 . T A 3137 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=17.82;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3170,348,0 chrXI 98658 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-1.414;QD=15.80;ReadPosRankSum=0.153;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,183:188:99:3004,345,0 chrXI 98707 . A C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=13.7085;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.462;QD=16.54;ReadPosRankSum=1.687;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:2646,303,0 chrXI 98939 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2578;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=15.75;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:2947,321,0 chrXI 99008 . T C 4767.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.7164;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.03;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4767,549,0 chrXI 99224 . T C 5818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=287;Dels=0.00;FS=3.008;HaplotypeScore=24.5982;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.410;QD=20.27;ReadPosRankSum=2.432;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:2,282:287:99:5818,666,0 chrXI 99601 . A G 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.226;DP=231;Dels=0.00;FS=5.058;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.194;QD=21.78;ReadPosRankSum=3.423;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:4,226:231:99:5032,573,0 chrXI 99633 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=230;Dels=0.00;FS=5.164;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.110;QD=19.90;ReadPosRankSum=3.407;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:4,225:230:99:4576,531,0 chrXI 99646 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.4843;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.03;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4480,501,0 chrXI 99882 . C A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.00;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3652,396,0 chrXI 100090 . C G 3454.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3454,396,0 chrXI 100379 . A C 842 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.39;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:875,99,0 chrXI 100443 . C T 559 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=15.97;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:66:592,66,0 chrXI 100445 . A G 560 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.47;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:593,66,0 chrXI 100475 . T C 718 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.10;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:751,84,0 chrXI 100670 . T C 2413 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.13;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2446,276,0 chrXI 101564 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=223;Dels=0.00;FS=9.149;HaplotypeScore=20.0989;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.457;QD=20.61;ReadPosRankSum=3.304;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:4,219:223:99:4597,496,0 chrXI 102797 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4061,447,0 chrXI 103490 . T C 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=223;Dels=0.00;FS=3.230;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-0.629;QD=19.24;ReadPosRankSum=1.717;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4291,495,0 chrXI 103493 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.4328;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.71;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4375,498,0 chrXI 103508 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.8395;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.04;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3828,441,0 chrXI 103577 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2002;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.48;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4317,468,0 chrXI 103649 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.7714;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=17.62;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:3947,429,0 chrXI 103675 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=224;Dels=0.00;FS=13.296;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.292;QD=17.30;ReadPosRankSum=3.406;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:4,220:224:99:3875,450,0 chrXI 104318 . G T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=23.47;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4013,441,0 chrXI 104696 . G A 6142.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.6792;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.27;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6142,681,0 chrXI 104921 . T C 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=209;Dels=0.00;FS=4.183;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.126;QD=20.45;ReadPosRankSum=1.648;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4273,498,0 chrXI 105045 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4390,489,0 chrXI 105107 . C A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=18.9516;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.60;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3819,423,0 chrXI 105188 . C T 4516.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.16;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4516,498,0 chrXI 105353 . T C 6667.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.23;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6667,744,0 chrXI 105752 . T G 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.240;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.676;QD=22.75;ReadPosRankSum=0.342;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3845,423,0 chrXI 105974 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=20.0765;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.04;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3724,417,0 chrXI 106209 . T C 5349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=219;Dels=0.00;FS=10.762;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.959;QD=24.42;ReadPosRankSum=2.959;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:5349,588,0 chrXI 106700 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.48;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2170,243,0 chrXI 106799 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.25;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1969,222,0 chrXI 106922 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.22;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1255,138,0 chrXI 106932 . A T 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=57;Dels=0.00;FS=3.941;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.064;QD=18.95;ReadPosRankSum=1.672;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1113,123,0 chrXI 106986 . A C 1569 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=64.5782;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.64;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1602,177,0 chrXI 107762 . T A 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.229;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.445;QD=23.10;ReadPosRankSum=1.713;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4228,471,0 chrXI 108272 . C T 4791.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.0210;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.18;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4791,519,0 chrXI 108780 . T G 1755 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.265;QD=20.41;ReadPosRankSum=1.691;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1788,210,0 chrXI 108782 . T C 1734 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.330;QD=20.64;ReadPosRankSum=1.691;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1767,201,0 chrXI 108783 . G A 1790 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.31;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1823,204,0 chrXI 108984 . A T 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=4.949;HaplotypeScore=12.7598;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.647;QD=23.96;ReadPosRankSum=1.709;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3594,405,0 chrXI 109080 . G C 1885 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.45;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1918,213,0 chrXI 109094 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=15.95;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1931,213,0 chrXI 109100 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=15.08;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1918,210,0 chrXI 109601 . T A 2999 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3032,342,0 chrXI 109778 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.82;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1713,189,0 chrXI 109838 . C G 2242 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.65;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2275,267,0 chrXI 110439 . A T 2320 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.43;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2353,261,0 chrXI 110685 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.272;QD=23.03;ReadPosRankSum=1.710;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3639,405,0 chrXI 110740 . T C 3029 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.61;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3062,342,0 chrXI 110746 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.13;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3012,336,0 chrXI 110832 . G C 2908 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.77;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2941,327,0 chrXI 110922 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.51;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3527,384,0 chrXI 111256 . T C 2875 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.69;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2908,324,0 chrXI 111552 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.60;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2819,309,0 chrXI 111555 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=139;Dels=0.00;FS=2.581;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.599;QD=19.01;ReadPosRankSum=2.891;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2675,300,0 chrXI 111787 . T G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.893;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.204;QD=20.66;ReadPosRankSum=0.979;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3388,361,0 chrXI 112039 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.49;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3256,378,0 chrXI 112062 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=24.04;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3341,360,0 chrXI 112116 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=18.77;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2210,240,0 chrXI 112117 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4131;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=18.71;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2222,240,0 chrXI 112672 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=176;Dels=0.00;FS=2.994;HaplotypeScore=12.6072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.807;QD=23.43;ReadPosRankSum=2.379;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4123,456,0 chrXI 112727 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2883,312,0 chrXI 112813 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2290,249,0 chrXI 113037 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.79;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1389,153,0 chrXI 113281 . A C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.666;QD=22.30;ReadPosRankSum=1.666;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2375,273,0 chrXI 113704 . G C 3630.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.10;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3630,414,0 chrXI 115354 . A G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.814;QD=22.29;ReadPosRankSum=1.690;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1883,216,0 chrXI 115481 . T C 1254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.031;QD=22.80;ReadPosRankSum=2.359;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:2,52:55:99:1287,147,0 chrXI 115716 . T C 3104 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.88;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3137,354,0 chrXI 117096 . A G 4787.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.9174;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.93;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4787,534,0 chrXI 117695 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=182;Dels=0.00;FS=2.946;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.574;QD=20.49;ReadPosRankSum=2.396;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3730,414,0 chrXI 117714 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=190;Dels=0.00;FS=2.876;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.261;QD=18.14;ReadPosRankSum=2.371;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:3447,399,0 chrXI 118487 . C A 4544.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.92;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4544,486,0 chrXI 119301 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.54;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5094,573,0 chrXI 119326 . C T 4265.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.47;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4265,459,0 chrXI 119339 . T C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=219;Dels=0.00;FS=2.943;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.710;QD=19.30;ReadPosRankSum=2.382;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4227,468,0 chrXI 119362 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.5792;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.01;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:3764,423,0 chrXI 119794 . G C 2882 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.1528;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.44;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2915,324,0 chrXI 120088 . A G 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.740;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.911;QD=23.76;ReadPosRankSum=1.714;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4634,510,0 chrXI 120268 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.2897;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.11;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4113,462,0 chrXI 120563 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=6.985;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.763;QD=22.69;ReadPosRankSum=2.412;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2960,333,0 chrXI 120740 . A G 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=4.124;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.215;QD=22.60;ReadPosRankSum=1.707;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3129,366,0 chrXI 120788 . A T 3109 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.87;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3142,345,0 chrXI 120917 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.16;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3435,384,0 chrXI 120989 . T C 2252 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.58;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2285,261,0 chrXI 120995 . A T 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.613;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.706;QD=20.44;ReadPosRankSum=1.700;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2240,243,0 chrXI 121247 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=3.009;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.595;QD=23.21;ReadPosRankSum=2.403;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3736,417,0 chrXI 121473 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.11;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2806,300,0 chrXI 121841 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3099,351,0 chrXI 123365 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.93;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3988,441,0 chrXI 123413 . G T 3099 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.79;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3132,351,0 chrXI 123525 . C T 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.257;DP=125;Dels=0.00;FS=4.213;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.307;QD=19.50;ReadPosRankSum=0.307;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2471,251,0 chrXI 123526 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.92;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2543,276,0 chrXI 124864 . T A 2644 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1699;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.99;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2677,291,0 chrXI 125651 . T A 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.161;QD=21.87;ReadPosRankSum=1.625;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2154,234,0 chrXI 126182 . G A 5201.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.32;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:5201,564,0 chrXI 126748 . A G 4897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.265;DP=226;Dels=0.00;FS=17.064;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.997;QD=21.67;ReadPosRankSum=4.473;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:7,216:226:99:4897,549,0 chrXI 126997 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.13;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3012,330,0 chrXI 127000 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.37;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3129,354,0 chrXI 127589 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.6361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.196;QD=19.99;ReadPosRankSum=0.862;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4117,459,0 chrXI 128185 . A G 2978 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.22;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3011,333,0 chrXI 128195 . A C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.088;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6051;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.029;QD=20.35;ReadPosRankSum=1.981;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2618,275,0 chrXI 128515 . G A 4589.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4589,501,0 chrXI 128646 . C T 5434.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.37;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5434,589,0 chrXI 128761 . G A 5970.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=21.2986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5970,669,0 chrXI 129198 . C G 3654.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.42;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3654,405,0 chrXI 129200 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.72;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3583,399,0 chrXI 129329 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.24;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2964,330,0 chrXI 129511 . A G 2766 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.0069;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.28;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2799,324,0 chrXI 129862 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.10;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3558,399,0 chrXI 129968 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.72;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3888,432,0 chrXI 130226 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.14;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3378,366,0 chrXI 130459 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=131.4747;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.30;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3704,390,0 chrXI 130562 . T C 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.467;QD=18.97;ReadPosRankSum=1.702;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2214,252,0 chrXI 130567 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.15;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2465,264,0 chrXI 130642 . T C 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=3.617;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.998;QD=19.48;ReadPosRankSum=1.713;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3624,405,0 chrXI 130717 . G T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.22;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3585,390,0 chrXI 130867 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.10;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4343,468,0 chrXI 132152 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.75;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2008,222,0 chrXI 132155 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.41;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1892,207,0 chrXI 132251 . T A 2882 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=19.88;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2915,312,0 chrXI 132257 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=19.18;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2641,285,0 chrXI 132266 . A G 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=136;Dels=0.00;FS=2.590;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;MQRankSum=-1.470;QD=17.51;ReadPosRankSum=2.948;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2415,273,0 chrXI 132287 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=16.25;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2097,237,0 chrXI 132298 . A G 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=2.922;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-1.261;QD=16.19;ReadPosRankSum=2.283;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1944,219,0 chrXI 132450 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=22.46;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2706,291,0 chrXI 132570 . C A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.27;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3932,435,0 chrXI 133472 . C A 2555 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.77;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2588,291,0 chrXI 133509 . G T 2492 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.12;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2525,276,0 chrXI 133596 . C G 2172 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.93;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2205,246,0 chrXI 133597 . A T 2131 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.10;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2164,243,0 chrXI 134030 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2188,249,0 chrXI 134184 . A G 3177 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.4516;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.19;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3210,363,0 chrXI 134382 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2861,321,0 chrXI 134462 . T C 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.534;DP=108;Dels=0.00;FS=9.410;HaplotypeScore=75.2493;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.886;QD=14.54;ReadPosRankSum=0.457;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:4,104:108:99:1603,183,0 chrXI 134692 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.44;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3197,342,0 chrXI 135130 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3707,414,0 chrXI 135581 . C A 2466 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.90;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2499,273,0 chrXI 135691 . C G 2754 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2787,309,0 chrXI 136140 . T A 362 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.347;QD=18.10;ReadPosRankSum=1.561;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,19:20:45:395,45,0 chrXI 136180 . G A 1257 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1290,144,0 chrXI 136273 . T A 2004 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.935;QD=24.14;ReadPosRankSum=2.391;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,81:83:99:2037,219,0 chrXI 136298 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.33;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2059,237,0 chrXI 136328 . A G 37.97 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=97.3390;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=0.34;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:9:70,9,0 chrXI 136421 . A C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=10.2185;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.026;QD=21.40;ReadPosRankSum=1.680;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2943,336,0 chrXI 136665 . A T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.18;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3579,387,0 chrXI 136692 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.03;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3316,357,0 chrXI 136764 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.86;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3074,339,0 chrXI 136868 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=186;Dels=0.00;FS=2.973;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.235;QD=23.57;ReadPosRankSum=2.265;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4384,504,0 chrXI 136898 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.20;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3921,444,0 chrXI 136931 . A C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.582;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-1.519;QD=22.99;ReadPosRankSum=1.661;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3357,375,0 chrXI 137177 . T A 1844 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=18.82;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1877,207,0 chrXI 137180 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=20.36;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1886,204,0 chrXI 137228 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.157;QD=20.03;ReadPosRankSum=1.693;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1796,204,0 chrXI 137272 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.54;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2217,243,0 chrXI 137300 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.56;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1883,210,0 chrXI 137342 . C G 1663 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.60;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1696,201,0 chrXI 137381 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.14;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2254,246,0 chrXI 137449 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.05;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1831,201,0 chrXI 137500 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.13;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1814,201,0 chrXI 137979 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3389,375,0 chrXI 138829 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=140;Dels=0.00;FS=6.711;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.042;QD=21.89;ReadPosRankSum=2.307;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3098,360,0 chrXI 139006 . T A 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=126;Dels=0.00;FS=7.087;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.830;QD=19.41;ReadPosRankSum=2.313;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2479,273,0 chrXI 139012 . A G 2531 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.77;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2564,291,0 chrXI 139573 . T C 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.350;QD=22.52;ReadPosRankSum=1.707;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3096,348,0 chrXI 140688 . A C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.095;QD=21.73;ReadPosRankSum=1.708;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3206,360,0 chrXI 140707 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.27;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3274,357,0 chrXI 140833 . T G 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.077;DP=102;Dels=0.00;FS=2.954;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.734;QD=19.64;ReadPosRankSum=2.350;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:2,97:102:99:2036,231,0 chrXI 141122 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3297,369,0 chrXI 141194 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3602,402,0 chrXI 141805 . G C 4601.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.8275;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.84;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4601,516,0 chrXI 141902 . A G 5829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=263;Dels=0.00;FS=4.243;HaplotypeScore=19.8915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.428;QD=22.16;ReadPosRankSum=1.706;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5829,678,0 chrXI 142063 . T C 5504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=262;Dels=0.00;FS=14.232;HaplotypeScore=15.1501;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.194;QD=21.01;ReadPosRankSum=3.373;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:4,255:262:99:5504,618,0 chrXI 142095 . T A 6301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=277;Dels=0.00;FS=3.743;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.294;QD=22.75;ReadPosRankSum=1.720;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:1,276:277:99:6301,699,0 chrXI 142262 . A G 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.030;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;MQRankSum=-0.986;QD=18.57;ReadPosRankSum=1.941;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2280,232,0 chrXI 142268 . A T 1925 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=18.51;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1958,225,0 chrXI 142277 . G T 1376 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.4882;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=17.87;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1409,159,0 chrXI 142283 . A G 972 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=74;Dels=0.00;FS=6.570;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;MQRankSum=0.717;QD=13.14;ReadPosRankSum=2.183;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1005,117,0 chrXI 142286 . A G 65.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=42.04;MQ0=0;MQRankSum=4.557;QD=0.93;ReadPosRankSum=-3.601;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:51,18:70:95:95,0,587 chrXI 142535 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=19.0183;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.817;QD=21.54;ReadPosRankSum=1.555;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3748,429,0 chrXI 142812 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=5.760;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.119;QD=21.63;ReadPosRankSum=1.701;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2477,282,0 chrXI 143087 . T C 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.439;QD=22.76;ReadPosRankSum=1.673;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2719,312,0 chrXI 143133 . T A 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=108;Dels=0.00;FS=11.879;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.710;QD=23.36;ReadPosRankSum=2.935;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2556,279,0 chrXI 143177 . G A 2627 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.3623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2660,291,0 chrXI 143527 . A T 2542 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.76;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2575,282,0 chrXI 143668 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.02;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3302,360,0 chrXI 143713 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.88;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3707,402,0 chrXI 143731 . A T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.26;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3238,357,0 chrXI 144014 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.9539;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.00;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2655,288,0 chrXI 144571 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=2;QD=16.42;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1839,207,0 chrXI 144682 . T C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.562;DP=205;Dels=0.00;FS=22.649;HaplotypeScore=60.2488;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;MQRankSum=4.123;QD=11.88;ReadPosRankSum=6.551;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:60,145:205:99:2469,191,0 chrXI 144700 . C T 1921.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.146;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=53.0763;MLEAC=1;MLEAF=0.500;MQ=42.23;MQ0=4;MQRankSum=-0.059;QD=8.32;ReadPosRankSum=4.526;SB=-1.506e+03 GT:AD:DP:GQ:PL 0/1:52,178:231:99:1951,0,183 chrXI 144727 . T C 449.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.144;DP=269;Dels=0.00;FS=2.342;HaplotypeScore=54.3002;MLEAC=1;MLEAF=0.500;MQ=44.61;MQ0=8;MQRankSum=-1.574;QD=1.67;ReadPosRankSum=2.220;SB=-6.290e+02 GT:AD:DP:GQ:PL 0/1:176,93:269:99:479,0,2484 chrXI 144736 . T C 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.936;DP=294;Dels=0.00;FS=8.186;HaplotypeScore=158.5821;MLEAC=1;MLEAF=0.500;MQ=43.60;MQ0=9;MQRankSum=1.232;QD=0.16;ReadPosRankSum=-4.441;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:256,38:294:77:77,0,2874 chrXI 144742 . C T 1137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.947;DP=313;Dels=0.00;FS=4.018;HaplotypeScore=45.3445;MLEAC=1;MLEAF=0.500;MQ=42.85;MQ0=9;MQRankSum=-0.370;QD=3.63;ReadPosRankSum=-7.900;SB=-3.810e+02 GT:AD:DP:GQ:PL 0/1:189,124:313:99:1167,0,2048 chrXI 144790 . C T 1300.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.430;DP=330;Dels=0.00;FS=6.852;HaplotypeScore=147.2833;MLEAC=1;MLEAF=0.500;MQ=44.19;MQ0=9;MQRankSum=-0.385;QD=3.94;ReadPosRankSum=-2.843;SB=-9.170e+02 GT:AD:DP:GQ:PL 0/1:204,126:330:99:1330,0,2441 chrXI 144796 . T C 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.115;DP=342;Dels=0.00;FS=7.682;HaplotypeScore=166.2053;MLEAC=1;MLEAF=0.500;MQ=44.08;MQ0=9;MQRankSum=0.580;QD=0.43;ReadPosRankSum=-0.607;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:290,51:342:99:176,0,4003 chrXI 144808 . C T 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;DP=326;Dels=0.00;FS=23.827;HaplotypeScore=125.9050;MLEAC=1;MLEAF=0.500;MQ=43.69;MQ0=10;MQRankSum=-2.006;QD=0.37;ReadPosRankSum=-0.289;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:259,64:326:99:149,0,3547 chrXI 144814 . A G 2538.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.212;DP=310;Dels=0.00;FS=58.579;HaplotypeScore=86.5781;MLEAC=1;MLEAF=0.500;MQ=43.14;MQ0=11;MQRankSum=7.164;QD=8.19;ReadPosRankSum=3.668;SB=-9.320e+02 GT:AD:DP:GQ:PL 0/1:136,174:310:99:2568,0,1069 chrXI 144829 . G A 2460.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.997;DP=297;Dels=0.00;FS=23.405;HaplotypeScore=84.8807;MLEAC=1;MLEAF=0.500;MQ=44.95;MQ0=18;MQRankSum=7.531;QD=8.28;ReadPosRankSum=4.500;SB=-1.169e+03 GT:AD:DP:GQ:PL 0/1:129,165:297:99:2490,0,842 chrXI 144865 . T C 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.841;DP=329;Dels=0.00;FS=13.361;HaplotypeScore=11.5426;MLEAC=1;MLEAF=0.500;MQ=43.52;MQ0=1;MQRankSum=-9.463;QD=0.05;ReadPosRankSum=1.291;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:238,90:329:45:45,0,3322 chrXI 144889 . T C 2008.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.410;DP=354;Dels=0.00;FS=17.505;HaplotypeScore=15.1149;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=0;MQRankSum=-3.519;QD=5.67;ReadPosRankSum=-3.128;SB=-1.822e+03 GT:AD:DP:GQ:PL 0/1:149,203:354:99:2038,0,1509 chrXI 144916 . C T 2918.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.282;DP=337;Dels=0.00;FS=22.247;HaplotypeScore=32.2104;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=0;MQRankSum=0.075;QD=8.66;ReadPosRankSum=6.967;SB=-2.371e+03 GT:AD:DP:GQ:PL 0/1:100,237:337:99:2948,0,874 chrXI 144928 . G A 355.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.460;DP=293;Dels=0.00;FS=0.476;HaplotypeScore=46.1109;MLEAC=1;MLEAF=0.500;MQ=48.63;MQ0=0;MQRankSum=-6.051;QD=1.21;ReadPosRankSum=-11.365;SB=-4.280e+02 GT:AD:DP:GQ:PL 0/1:211,81:293:99:385,0,2966 chrXI 145596 . A C 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.147;QD=19.62;ReadPosRankSum=1.683;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1426,162,0 chrXI 145622 . C T 1094 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=16.83;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1127,123,0 chrXI 145718 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=47.3195;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.65;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1239,132,0 chrXI 145814 . T C 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.055;QD=24.81;ReadPosRankSum=2.379;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1745,192,0 chrXI 145907 . T C 2715 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.37;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2748,309,0 chrXI 145942 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.55;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3391,378,0 chrXI 146277 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.20;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3186,348,0 chrXI 146436 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=171;Dels=0.01;FS=2.831;HaplotypeScore=38.1303;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.519;QD=22.16;ReadPosRankSum=2.421;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3790,438,0 chrXI 146650 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-1.055;QD=22.40;ReadPosRankSum=2.397;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3191,357,0 chrXI 146689 . A T 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=119;Dels=0.03;FS=0.000;HaplotypeScore=6.9660;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.159;QD=21.13;ReadPosRankSum=2.921;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2547,276,0 chrXI 146690 . T C 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.978;DP=117;Dels=0.00;FS=6.201;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=-0.209;QD=20.53;ReadPosRankSum=4.054;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:6,108:117:99:2435,276,0 chrXI 146730 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=19.38;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1661,189,0 chrXI 146743 . A T 1683 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=19.57;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1716,192,0 chrXI 146760 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=19.67;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2059,231,0 chrXI 146797 . T A 3002 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=23.45;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3035,324,0 chrXI 146817 . T G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=5.406;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.457;QD=20.44;ReadPosRankSum=1.261;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2588,297,0 chrXI 146875 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=14.52;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1601,180,0 chrXI 146915 . A G 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=7.183;HaplotypeScore=95.6458;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;MQRankSum=-1.702;QD=12.37;ReadPosRankSum=1.672;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1455,174,0 chrXI 146918 . C T 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.076;DP=101;Dels=0.00;FS=2.250;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=4.087;QD=0.37;ReadPosRankSum=-4.102;SB=-5.797e+01 GT:AD:DP:GQ:PL 1/1:95,6:101:9:69,9,0 chrXI 146936 . C T 1475 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=12.19;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1508,177,0 chrXI 147072 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=23.42;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3700,411,0 chrXI 147232 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.83;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2702,297,0 chrXI 147476 . G C 2422 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.02;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2455,282,0 chrXI 148157 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=112;Dels=0.00;FS=4.019;HaplotypeScore=8.6116;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.952;QD=21.96;ReadPosRankSum=1.607;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2493,285,0 chrXI 148629 . G T 2885 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.45;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2918,318,0 chrXI 148801 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.56;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2361,276,0 chrXI 148838 . T C 2110 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.01;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2143,243,0 chrXI 148894 . T C 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=3.416;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.635;QD=20.18;ReadPosRankSum=1.698;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2091,237,0 chrXI 148916 . A T 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.629;QD=21.90;ReadPosRankSum=1.698;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2245,249,0 chrXI 149209 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2242,252,0 chrXI 149332 . G T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.78;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3865,417,0 chrXI 149388 . A C 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=3.643;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.263;QD=22.83;ReadPosRankSum=1.665;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3539,405,0 chrXI 149575 . G T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.42;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3841,426,0 chrXI 150122 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.510;QD=22.69;ReadPosRankSum=1.710;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3539,396,0 chrXI 150247 . A T 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.023;QD=21.35;ReadPosRankSum=1.663;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3236,360,0 chrXI 150307 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.44;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2838,315,0 chrXI 150681 . T C 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=128;Dels=0.00;FS=3.035;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.873;QD=21.82;ReadPosRankSum=2.411;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2826,315,0 chrXI 150866 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.93;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3714,408,0 chrXI 150990 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,101:105:99:2302,261,0 chrXI 151229 . G T 2138 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.07;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2171,234,0 chrXI 151420 . A T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.25;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3459,387,0 chrXI 151858 . T C 2640 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.12;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2673,297,0 chrXI 151866 . G T 2786 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.11;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2819,306,0 chrXI 151935 . T C 2715 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.1610;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.07;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2748,306,0 chrXI 152011 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3789,426,0 chrXI 152114 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.02;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3499,393,0 chrXI 152294 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=204;Dels=0.00;FS=6.486;HaplotypeScore=18.0348;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.225;QD=21.26;ReadPosRankSum=2.364;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:2,200:204:99:4337,474,0 chrXI 152470 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=3.565;HaplotypeScore=14.7812;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.052;QD=20.18;ReadPosRankSum=1.628;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4076,462,0 chrXI 152571 . T G 4038.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=11.4223;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.07;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4038,447,0 chrXI 152632 . C T 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.930;QD=24.18;ReadPosRankSum=-1.204;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:4352,471,0 chrXI 153112 . T C 1895 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1928,222,0 chrXI 153208 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=3.647;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.118;QD=22.94;ReadPosRankSum=1.693;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2052,234,0 chrXI 153726 . C A 2272 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.50;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2305,258,0 chrXI 153799 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2747,300,0 chrXI 153948 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.77;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3244,363,0 chrXI 154462 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.63;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2901,324,0 chrXI 154732 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.28;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4004,456,0 chrXI 154842 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.24;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4651,519,0 chrXI 154914 . A C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.300;QD=23.01;ReadPosRankSum=1.713;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4142,462,0 chrXI 154982 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=168;Dels=0.00;FS=3.024;HaplotypeScore=12.0816;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.214;QD=22.45;ReadPosRankSum=2.420;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3771,417,0 chrXI 155185 . A T 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=135;Dels=0.00;FS=5.331;HaplotypeScore=11.6297;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.767;QD=20.45;ReadPosRankSum=2.888;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:2794,303,0 chrXI 155363 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6684;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.13;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3568,384,0 chrXI 155453 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3129,348,0 chrXI 155667 . T A 4298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=179;Dels=0.00;FS=2.963;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.089;QD=24.01;ReadPosRankSum=2.312;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4298,468,0 chrXI 155787 . A T 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.317;QD=24.04;ReadPosRankSum=1.513;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3414,384,0 chrXI 155819 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.75;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3440,366,0 chrXI 156351 . G T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.4281;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.79;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4227,474,0 chrXI 156669 . G A 4548.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.06;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4548,492,0 chrXI 156730 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.126;DP=185;Dels=0.00;FS=5.208;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.961;QD=21.19;ReadPosRankSum=3.412;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:4,179:185:99:3920,438,0 chrXI 156795 . C T 4518.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.3228;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.53;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4518,481,0 chrXI 156873 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;DP=156;Dels=0.00;FS=8.882;HaplotypeScore=17.7679;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.938;QD=21.75;ReadPosRankSum=3.264;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:4,149:156:99:3393,384,0 chrXI 157203 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=164;Dels=0.00;FS=3.036;HaplotypeScore=13.0372;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.259;QD=22.91;ReadPosRankSum=2.419;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3758,420,0 chrXI 157323 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.84;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3335,372,0 chrXI 157626 . C G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.10;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3425,399,0 chrXI 157764 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=156;Dels=0.00;FS=4.022;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.405;QD=21.49;ReadPosRankSum=1.575;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3353,390,0 chrXI 158092 . A C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9711;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.546;QD=20.69;ReadPosRankSum=1.686;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3136,354,0 chrXI 158228 . A T 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.732;QD=19.79;ReadPosRankSum=1.651;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2566,279,0 chrXI 158241 . C A 2284 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.88;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2317,264,0 chrXI 158497 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.86;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3412,378,0 chrXI 158549 . T G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=3.013;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.366;QD=19.18;ReadPosRankSum=2.356;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2545,297,0 chrXI 158990 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4474,483,0 chrXI 159194 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.842;QD=21.19;ReadPosRankSum=2.950;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2999,342,0 chrXI 159487 . T C 1836 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=0.577;QD=22.67;ReadPosRankSum=1.689;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1869,207,0 chrXI 159489 . G A 1851 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=22.85;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1884,210,0 chrXI 159495 . A G 1935 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=22.50;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1968,213,0 chrXI 159705 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.85;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3245,354,0 chrXI 159732 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=19.18;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2757,312,0 chrXI 159741 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=19.03;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2774,309,0 chrXI 159843 . A G 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=20.52;ReadPosRankSum=1.688;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3234,363,0 chrXI 159923 . T C 2942 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3772;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.48;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2975,333,0 chrXI 160401 . T C 2983 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3016,348,0 chrXI 160661 . T C 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6437;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.018;QD=22.99;ReadPosRankSum=1.696;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4484,504,0 chrXI 160799 . A G 4311.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.95;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4311,486,0 chrXI 160836 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.88;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4490,504,0 chrXI 160971 . G T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.83;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3584,393,0 chrXI 161178 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.64;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3302,369,0 chrXI 161493 . G C 2979 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.57;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3012,345,0 chrXI 161769 . C T 4403.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.81;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4403,480,0 chrXI 162073 . T C 3186 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3219,381,0 chrXI 162581 . C T 1405 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.25;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1438,159,0 chrXI 162583 . G A 1405 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.25;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1438,156,0 chrXI 162589 . T G 1362 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.41;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1395,156,0 chrXI 162595 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.17;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1432,159,0 chrXI 162828 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.36;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2152,240,0 chrXI 162874 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.54;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2222,246,0 chrXI 163461 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.06;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2942,327,0 chrXI 163473 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.75;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3228,348,0 chrXI 163484 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.74;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3247,357,0 chrXI 163846 . G A 6634.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.69;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:1,279:280:99:6634,726,0 chrXI 164020 . G T 5546.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.2977;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.54;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,242:246:99:5546,621,0 chrXI 164421 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=155;Dels=0.00;FS=2.998;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.230;QD=19.93;ReadPosRankSum=2.339;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3122,345,0 chrXI 164422 . G T 3064 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.16;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3097,348,0 chrXI 164793 . T C 1878 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.19;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1911,216,0 chrXI 164905 . T A 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=-0.427;QD=17.65;ReadPosRankSum=1.915;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2133,234,0 chrXI 165003 . G A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.8966;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=24.33;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4306,465,0 chrXI 165037 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.7441;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=1.400;QD=23.84;ReadPosRankSum=-0.111;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4554,488,0 chrXI 165249 . C T 5258.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=9.7985;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.55;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:5258,582,0 chrXI 165256 . G A 5112.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.81;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5112,558,0 chrXI 165315 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.13;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5109,573,0 chrXI 165418 . G A 4728.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.1470;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.62;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4728,513,0 chrXI 165571 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.6151;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.34;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4490,498,0 chrXI 165685 . T G 4286.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.09;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4286,489,0 chrXI 165712 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.10;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4045,447,0 chrXI 165754 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.88;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3612,396,0 chrXI 166202 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.74;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4440,474,0 chrXI 166454 . T A 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=4.771;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.196;QD=19.04;ReadPosRankSum=1.608;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3231,369,0 chrXI 166464 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.06;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3290,360,0 chrXI 166502 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.89;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:2961,324,0 chrXI 166543 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.00;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3138,348,0 chrXI 166687 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=176;Dels=0.00;FS=4.387;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.151;QD=21.95;ReadPosRankSum=1.712;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3864,429,0 chrXI 166705 . C T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.06;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4548,501,0 chrXI 166774 . C T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.6772;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.23;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4413,489,0 chrXI 167238 . A T 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4225;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.899;QD=21.48;ReadPosRankSum=1.694;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3930,417,0 chrXI 167254 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.93;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3043,351,0 chrXI 167261 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.60;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2897,330,0 chrXI 167857 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.55;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3439,375,0 chrXI 167974 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.6020;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.15;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2906,327,0 chrXI 168128 . G C 3744.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1055;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.64;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3744,438,0 chrXI 168140 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.88;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3477,372,0 chrXI 168162 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.98;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2782,309,0 chrXI 168746 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2212,246,0 chrXI 168942 . A G 714 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.31;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:87:747,87,0 chrXI 169345 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.87;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3682,405,0 chrXI 170773 . T C 5141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=240;Dels=0.00;FS=3.916;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.703;QD=21.42;ReadPosRankSum=1.689;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5141,576,0 chrXI 171082 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.73;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2843,321,0 chrXI 171261 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=18.9201;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.37;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3235,342,0 chrXI 171480 . C A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.68;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3908,420,0 chrXI 171642 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3675,402,0 chrXI 171742 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.76;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2628,294,0 chrXI 172034 . C T 5689.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.6775;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.13;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5689,633,0 chrXI 172091 . G A 4639.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.7452;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.88;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,207:212:99:4639,507,0 chrXI 172454 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4235;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.086;QD=22.56;ReadPosRankSum=2.387;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3587,405,0 chrXI 172538 . C T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.2960;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.62;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3827,414,0 chrXI 172688 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.20;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3944,438,0 chrXI 172701 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=204;Dels=0.00;FS=2.572;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.401;QD=19.49;ReadPosRankSum=2.916;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:3975,444,0 chrXI 172973 . T A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.59;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3973,447,0 chrXI 173009 . G A 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.911;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.8136;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.432;QD=22.21;ReadPosRankSum=0.951;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3843,412,0 chrXI 173060 . C A 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.5772;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.990;QD=22.01;ReadPosRankSum=-0.837;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4027,428,0 chrXI 173114 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=153;Dels=0.00;FS=6.895;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=1.738;QD=21.06;ReadPosRankSum=2.385;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3255,372,0 chrXI 173133 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.97;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3428,375,0 chrXI 173190 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.12;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3682,426,0 chrXI 173315 . G C 3667.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.5284;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.72;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3667,411,0 chrXI 173875 . A T 1891 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.6979;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=20.55;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1924,204,0 chrXI 173878 . G A 1685 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=18.12;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1718,192,0 chrXI 173977 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.70;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1716,195,0 chrXI 174085 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.24;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1234,138,0 chrXI 174125 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.84;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2203,237,0 chrXI 174180 . G T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.45;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3496,375,0 chrXI 174419 . G C 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.6260;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.481;QD=22.89;ReadPosRankSum=-1.163;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4783,555,0 chrXI 174509 . C T 5431.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.5888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5431,600,0 chrXI 174833 . T A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4055,450,0 chrXI 175133 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.4068;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.17;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3946,435,0 chrXI 175391 . T G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=204;Dels=0.00;FS=4.023;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.578;QD=19.53;ReadPosRankSum=1.698;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:3985,462,0 chrXI 175397 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.87;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3934,453,0 chrXI 175954 . A G 2006 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2039,240,0 chrXI 175999 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=2.714;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.831;QD=22.58;ReadPosRankSum=2.363;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2607,291,0 chrXI 176128 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.38;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3938,426,0 chrXI 176323 . G C 2819 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.71;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:2852,333,0 chrXI 176335 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.29;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2792,312,0 chrXI 176422 . G C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.67;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3469,387,0 chrXI 176521 . A G 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.207;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.414;QD=22.65;ReadPosRankSum=1.701;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2593,291,0 chrXI 176572 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.60;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2798,306,0 chrXI 176582 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.99;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2870,318,0 chrXI 177551 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3268,369,0 chrXI 177728 . A T 4693.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4693,510,0 chrXI 177965 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.41;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3725,429,0 chrXI 178025 . G T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.52;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3776,423,0 chrXI 178046 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=167;Dels=0.00;FS=5.389;HaplotypeScore=4.9877;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.398;QD=19.04;ReadPosRankSum=1.669;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3212,384,0 chrXI 178121 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.75;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2447,267,0 chrXI 178177 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.22;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2277,249,0 chrXI 178243 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.9296;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.57;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2484,279,0 chrXI 178268 . C A 2134 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.13;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2167,243,0 chrXI 178399 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.16;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2465,276,0 chrXI 178422 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.36;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2813,309,0 chrXI 179372 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.20;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1773,192,0 chrXI 179422 . T C 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.713;QD=21.64;ReadPosRankSum=2.376;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1483,168,0 chrXI 179438 . A T 1677 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.50;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1710,189,0 chrXI 179509 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3021,330,0 chrXI 179928 . T C 2676 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=17.38;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2709,300,0 chrXI 179949 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=16.85;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2476,270,0 chrXI 180074 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.39;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2386,261,0 chrXI 180128 . A G 2082 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.15;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2115,246,0 chrXI 180215 . T C 1062 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=19.31;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1095,123,0 chrXI 180512 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.64;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1684,192,0 chrXI 180524 . A C 1671 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.89;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1704,195,0 chrXI 180583 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.78;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1550,168,0 chrXI 180730 . C A 2029 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.30;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2062,225,0 chrXI 180758 . A G 2298 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.08;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2331,267,0 chrXI 182392 . G T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5859;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.18;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3603,402,0 chrXI 182634 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.86;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2110,228,0 chrXI 183161 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.13;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3673,405,0 chrXI 183657 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2866,309,0 chrXI 184809 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4344,477,0 chrXI 185459 . T C 2501 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2534,282,0 chrXI 186571 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3528,393,0 chrXI 186668 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2472,282,0 chrXI 186950 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3423,384,0 chrXI 187243 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2948,327,0 chrXI 187398 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.33;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3430,381,0 chrXI 188443 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.38;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4252,465,0 chrXI 188539 . T A 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=4.050;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.816;QD=22.95;ReadPosRankSum=1.665;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3558,387,0 chrXI 188557 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.650;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.000;QD=21.68;ReadPosRankSum=1.637;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3220,369,0 chrXI 188706 . G A 2088 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=16.57;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2121,246,0 chrXI 188875 . T A 2566 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.7121;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.54;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2599,282,0 chrXI 188916 . A G 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.469;QD=21.96;ReadPosRankSum=1.696;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2141,237,0 chrXI 189011 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=24.94;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2427,264,0 chrXI 189250 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.48;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3459,369,0 chrXI 189718 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.6742;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.37;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3646,405,0 chrXI 189907 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.37;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3209,348,0 chrXI 189929 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.71;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3181,342,0 chrXI 190193 . T C 2709 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.1444;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.39;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2742,306,0 chrXI 190441 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.24;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4170,462,0 chrXI 190594 . T C 2959 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2992,351,0 chrXI 190747 . T C 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=1.311;QD=23.49;ReadPosRankSum=1.667;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2546,285,0 chrXI 190915 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=152;Dels=0.00;FS=8.234;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.286;QD=23.29;ReadPosRankSum=3.389;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:4,146:152:99:3540,390,0 chrXI 191290 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=5.477;HaplotypeScore=7.3357;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.202;QD=23.99;ReadPosRankSum=1.646;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2912,321,0 chrXI 191390 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.18;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2278,249,0 chrXI 191416 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.08;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2506,282,0 chrXI 191510 . G T 2341 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.51;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2374,258,0 chrXI 191520 . T C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=4.273;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.308;QD=18.95;ReadPosRankSum=1.700;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2080,234,0 chrXI 191606 . T C 2081 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.81;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2114,249,0 chrXI 191609 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.07;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2262,246,0 chrXI 191928 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.20;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3735,417,0 chrXI 192038 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.65;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2717,300,0 chrXI 192080 . T A 2591 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.73;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2624,288,0 chrXI 192111 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.82;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2407,276,0 chrXI 192187 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2669,288,0 chrXI 192348 . A G 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.177;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.850;QD=23.32;ReadPosRankSum=1.699;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2505,282,0 chrXI 192706 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.397;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-0.846;QD=20.27;ReadPosRankSum=1.705;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2648,306,0 chrXI 192713 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=21.00;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2616,288,0 chrXI 192718 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.171;DP=134;Dels=0.00;FS=8.429;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=0.686;QD=18.06;ReadPosRankSum=3.301;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:4,130:134:99:2453,276,0 chrXI 192744 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.54;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2536,282,0 chrXI 193196 . A G 2419 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.41;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2452,285,0 chrXI 193235 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.253;QD=21.34;ReadPosRankSum=1.624;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2082,243,0 chrXI 193314 . T C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.240;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.875;QD=22.40;ReadPosRankSum=1.696;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2206,246,0 chrXI 193315 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.13;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2202,240,0 chrXI 193449 . T A 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=164;Dels=0.00;FS=2.676;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.476;QD=23.85;ReadPosRankSum=2.360;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3911,420,0 chrXI 193550 . A T 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=3.522;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-1.347;QD=24.38;ReadPosRankSum=1.703;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2886,321,0 chrXI 193727 . A G 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=202;Dels=0.00;FS=4.415;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.175;QD=23.06;ReadPosRankSum=1.680;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,198:202:99:4659,537,0 chrXI 193814 . A G 4239.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.38;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4239,492,0 chrXI 193826 . T C 4363.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.5032;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.88;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4363,486,0 chrXI 193963 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.61;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4115,456,0 chrXI 194175 . C G 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;DP=109;Dels=0.00;FS=157.306;HaplotypeScore=15.2016;MLEAC=1;MLEAF=0.500;MQ=57.63;MQ0=0;MQRankSum=1.117;QD=1.98;ReadPosRankSum=-6.970;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:66,42:109:99:246,0,1073 chrXI 194564 . A C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4009,450,0 chrXI 194709 . C T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.16;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4469,477,0 chrXI 194991 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=97;Dels=0.00;FS=2.725;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.079;QD=22.65;ReadPosRankSum=2.399;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2230,249,0 chrXI 195050 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.810;QD=21.65;ReadPosRankSum=1.700;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2393,267,0 chrXI 195153 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.27;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2415,267,0 chrXI 195199 . T C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.417;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.521;QD=20.97;ReadPosRankSum=1.704;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2612,300,0 chrXI 195226 . A C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.133;QD=21.18;ReadPosRankSum=1.680;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2871,324,0 chrXI 195269 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.94;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3149,351,0 chrXI 195507 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.00;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4416,492,0 chrXI 195729 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=159;Dels=0.00;FS=9.046;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.847;QD=21.66;ReadPosRankSum=3.348;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:4,154:159:99:3444,387,0 chrXI 195771 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.0621;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.13;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3377,360,0 chrXI 196346 . T A 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.479;QD=23.30;ReadPosRankSum=2.397;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3285,372,0 chrXI 196469 . A G 4671.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0924;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.24;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4671,519,0 chrXI 196589 . C A 4848.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.8470;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.04;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4848,546,0 chrXI 196624 . C A 4711.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.4831;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.13;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4711,525,0 chrXI 196712 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.97;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3355,378,0 chrXI 196937 . G A 4263.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.32;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4263,480,0 chrXI 196966 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=48.6360;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=11.01;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,108:176:99:1970,219,0 chrXI 197099 . G T 4697.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.72;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4697,519,0 chrXI 197500 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=130;Dels=0.00;FS=2.920;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.199;QD=22.15;ReadPosRankSum=2.374;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2912,318,0 chrXI 198215 . G A 2730 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7082;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=23.33;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2763,312,0 chrXI 198458 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.52;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3089,345,0 chrXI 198632 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2964,345,0 chrXI 198833 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2571,276,0 chrXI 199373 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.602;QD=20.86;ReadPosRankSum=1.706;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2828,324,0 chrXI 199443 . T C 3058 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.69;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3091,345,0 chrXI 199502 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.94;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2882,312,0 chrXI 199547 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.79;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2887,324,0 chrXI 199676 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.5155;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.31;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3501,396,0 chrXI 199802 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.89;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3775,417,0 chrXI 199979 . T C 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.010;QD=21.08;ReadPosRankSum=2.333;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2689,306,0 chrXI 199994 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.79;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2632,297,0 chrXI 200056 . T C 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0332;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.161;QD=19.65;ReadPosRankSum=1.694;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1841,213,0 chrXI 200248 . T C 2285 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.18;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2318,264,0 chrXI 200367 . A C 2213 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=18.60;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2246,255,0 chrXI 200384 . T C 1890 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=89.0336;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=16.87;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1923,216,0 chrXI 200402 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=15.18;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1475,162,0 chrXI 200416 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=16.55;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1721,189,0 chrXI 200506 . A G 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.552;QD=20.64;ReadPosRankSum=1.656;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1932,219,0 chrXI 200552 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=19.70;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1550,165,0 chrXI 200616 . G C 1436 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=21.12;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1469,162,0 chrXI 200667 . T A 842 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=20.05;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:875,96,0 chrXI 200678 . A G 921 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.47;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:954,108,0 chrXI 200708 . G A 781 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.60;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:814,90,0 chrXI 200730 . C A 781 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=21.11;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:814,87,0 chrXI 200767 . T A 576 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.58;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:609,66,0 chrXI 200776 . C A 481 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.81;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:57:514,57,0 chrXI 200798 . T C 321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;DP=23;Dels=0.00;FS=4.075;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.980;QD=13.96;ReadPosRankSum=1.583;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:42:354,42,0 chrXI 200857 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=17.65;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1392,153,0 chrXI 201291 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=217;Dels=0.00;FS=2.836;HaplotypeScore=10.9385;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=2.313;QD=19.14;ReadPosRankSum=2.404;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4153,474,0 chrXI 201376 . T C 5914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.664;DP=286;Dels=0.00;FS=11.957;HaplotypeScore=19.5725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.946;QD=20.68;ReadPosRankSum=3.829;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:5,278:286:99:5914,684,0 chrXI 201496 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.3451;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.93;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4604,501,0 chrXI 201685 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=6.151;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.133;QD=20.09;ReadPosRankSum=1.671;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,169:173:99:3475,396,0 chrXI 201727 . A G 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.098;DP=168;Dels=0.00;FS=7.486;HaplotypeScore=10.2066;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.124;QD=19.54;ReadPosRankSum=4.107;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:6,162:168:99:3283,378,0 chrXI 201754 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.21;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3775,408,0 chrXI 202203 . G T 3159 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.64;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3192,345,0 chrXI 202204 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.82;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3073,342,0 chrXI 202339 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.3930;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.499;QD=22.10;ReadPosRankSum=1.673;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2641,297,0 chrXI 202593 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=0;QD=23.33;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1293,144,0 chrXI 202594 . T A 1303 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=0;QD=24.13;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1336,144,0 chrXI 202604 . A G 968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;MQRankSum=-1.732;QD=20.17;ReadPosRankSum=1.660;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1001,114,0 chrXI 202620 . C T 926 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=22.05;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:959,108,0 chrXI 202624 . T C 808 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:93:841,93,0 chrXI 202626 . C T 776 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:87:809,87,0 chrXI 202631 . G C 650 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:81:683,81,0 chrXI 202641 . A T 649 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.94;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:75:682,75,0 chrXI 202986 . A T 40.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=44;Dels=0.00;FS=17.998;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=32.62;MQ0=0;MQRankSum=0.366;QD=0.91;ReadPosRankSum=2.338;SB=-9.506e+01 GT:AD:DP:GQ:PL 0/1:2,42:44:17:70,0,17 chrXI 203086 . G C 1475 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=25.9676;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=15.05;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1508,174,0 chrXI 204122 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2047,225,0 chrXI 204194 . A T 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=4.668;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.363;QD=24.11;ReadPosRankSum=1.711;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4026,444,0 chrXI 204464 . G A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.2649;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.83;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5240,585,0 chrXI 205160 . T C 1596 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=3.7873;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.28;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1629,189,0 chrXI 205207 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.82;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1813,198,0 chrXI 205304 . C A 1692 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.50;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1725,195,0 chrXI 205481 . G T 2077 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.58;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2110,231,0 chrXI 205494 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.60;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2107,237,0 chrXI 205594 . C G 1943 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.45;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1976,225,0 chrXI 205614 . A G 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.839;QD=20.46;ReadPosRankSum=1.696;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2018,225,0 chrXI 206732 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.98;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3501,387,0 chrXI 207105 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3913,435,0 chrXI 207429 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2830;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=18.79;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:2964,324,0 chrXI 207449 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.10;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2966,318,0 chrXI 208114 . T C 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.550;QD=19.04;ReadPosRankSum=1.595;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1480,168,0 chrXI 208115 . A T 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.245;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.048;QD=18.91;ReadPosRankSum=1.641;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1470,162,0 chrXI 208346 . C T 2304 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.94;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2337,252,0 chrXI 208390 . A T 2748 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.11;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2781,309,0 chrXI 208585 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.359;QD=22.83;ReadPosRankSum=1.638;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2567,285,0 chrXI 208639 . C A 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.542;QD=21.01;ReadPosRankSum=0.933;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1966,213,0 chrXI 208745 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2848,327,0 chrXI 209107 . T C 5684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=255;Dels=0.00;FS=2.988;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.281;QD=22.29;ReadPosRankSum=2.411;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:2,250:255:99:5684,654,0 chrXI 209449 . G A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.27;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4520,510,0 chrXI 210091 . A G 2501 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2534,282,0 chrXI 210799 . C T 5677.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=16.8588;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.71;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5677,642,0 chrXI 211081 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3050,336,0 chrXI 211221 . A C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3517,405,0 chrXI 211921 . A G 5210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=220;Dels=0.00;FS=3.428;HaplotypeScore=16.9668;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.763;QD=23.68;ReadPosRankSum=1.716;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5210,585,0 chrXI 211999 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.47;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4209,456,0 chrXI 212498 . A G 845 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:878,96,0 chrXI 213004 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.59;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3366,366,0 chrXI 213287 . T C 92.26 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=0.46;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:15:125,15,0 chrXI 213298 . A T 4208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.4803;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.684;QD=19.39;ReadPosRankSum=1.668;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4208,471,0 chrXI 213351 . T G 4172.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.1479;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.18;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4172,474,0 chrXI 213389 . T G 4116.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.49;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4116,465,0 chrXI 213442 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.67;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3262,360,0 chrXI 213480 . T C 2688 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.36;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2721,318,0 chrXI 213501 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=6.128;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.127;QD=20.90;ReadPosRankSum=1.676;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2625,291,0 chrXI 213597 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=94.2197;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.52;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2044,228,0 chrXI 213630 . C T 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=102;Dels=0.00;FS=2.765;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-0.037;QD=18.32;ReadPosRankSum=1.933;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,98:102:99:1902,204,0 chrXI 213633 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=18.17;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1850,201,0 chrXI 213680 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=78.2872;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=19.54;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1772,198,0 chrXI 213714 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.39;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2365,264,0 chrXI 213763 . A G 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=5.579;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.577;QD=23.60;ReadPosRankSum=1.701;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2676,297,0 chrXI 213795 . T C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=100;Dels=0.00;FS=2.587;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.859;QD=20.40;ReadPosRankSum=2.889;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2073,240,0 chrXI 214047 . C T 4076.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.70;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4076,453,0 chrXI 214124 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3475,387,0 chrXI 214537 . A G 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=4.367;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.648;QD=22.43;ReadPosRankSum=1.690;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1895,213,0 chrXI 215029 . A G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.479;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.050;QD=21.76;ReadPosRankSum=1.678;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2796,327,0 chrXI 215535 . A G 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.999;DP=100;Dels=0.00;FS=16.325;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.800;QD=20.60;ReadPosRankSum=3.368;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:4,96:100:99:2093,240,0 chrXI 215651 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.641;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.671;QD=22.95;ReadPosRankSum=1.638;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2603,294,0 chrXI 215821 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.41;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3881,438,0 chrXI 215962 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=200;Dels=0.00;FS=9.707;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.167;QD=20.02;ReadPosRankSum=2.945;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:4003,447,0 chrXI 215965 . T C 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.589;QD=20.79;ReadPosRankSum=1.714;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4033,441,0 chrXI 216046 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5542;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.87;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3543,384,0 chrXI 216646 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.35;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2040,234,0 chrXI 216709 . A C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.6485;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.932;QD=19.47;ReadPosRankSum=2.417;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2954,336,0 chrXI 216898 . T C 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=1.085;QD=21.25;ReadPosRankSum=2.367;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2562,294,0 chrXI 216902 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=21.93;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2621,285,0 chrXI 216920 . T A 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=106;Dels=0.00;FS=2.596;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;MQRankSum=-1.143;QD=18.45;ReadPosRankSum=2.915;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:3,103:106:99:1989,216,0 chrXI 216924 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=15.76;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1688,192,0 chrXI 216973 . A G 2114 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.94;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2147,243,0 chrXI 217268 . T A 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.568;QD=24.73;ReadPosRankSum=1.704;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3124,339,0 chrXI 217457 . A T 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.276;QD=22.61;ReadPosRankSum=1.664;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3436,381,0 chrXI 217814 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.804;QD=22.95;ReadPosRankSum=1.711;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3902,432,0 chrXI 217889 . T C 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.950;QD=22.83;ReadPosRankSum=1.695;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4270,489,0 chrXI 218542 . T A 2700 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.11;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2733,300,0 chrXI 218544 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.03;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2682,294,0 chrXI 218667 . A G 4896.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.98;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4896,537,0 chrXI 218804 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.58;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3301,375,0 chrXI 218829 . T A 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=5.031;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.644;QD=23.04;ReadPosRankSum=1.692;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3963,435,0 chrXI 218948 . T A 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=3.432;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.597;QD=18.40;ReadPosRankSum=1.703;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2223,243,0 chrXI 218957 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.51;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2236,252,0 chrXI 218976 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.03;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2393,279,0 chrXI 219042 . T G 2651 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.55;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2684,306,0 chrXI 219155 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9882;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.28;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3667,405,0 chrXI 219404 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.05;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1958,219,0 chrXI 219454 . G C 1982 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=23.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2015,228,0 chrXI 219481 . C T 1936 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=23.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1969,207,0 chrXI 219742 . A G 574 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=9.73;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:69:607,69,0 chrXI 219762 . A T 739 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=13.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:87:772,87,0 chrXI 219828 . A C 862 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=18.34;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:895,99,0 chrXI 219829 . G C 875 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=18.23;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:908,102,0 chrXI 219865 . A C 1793 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=21.87;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1826,204,0 chrXI 220007 . C A 2168 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.68;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2201,237,0 chrXI 220092 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.080;QD=23.99;ReadPosRankSum=1.640;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3623,402,0 chrXI 220166 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.08;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2895,318,0 chrXI 220287 . A G 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=219;Dels=0.00;FS=10.980;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.384;QD=22.47;ReadPosRankSum=2.968;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:3,214:219:99:4921,576,0 chrXI 220315 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.11;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4623,522,0 chrXI 220323 . C A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.6577;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.52;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4236,483,0 chrXI 220373 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.33;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3415,372,0 chrXI 220647 . A G 4724.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.04;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4724,552,0 chrXI 220701 . T C 4530.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.59;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4530,522,0 chrXI 220785 . A T 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.061;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.067;QD=19.68;ReadPosRankSum=0.866;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3424,384,0 chrXI 220788 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=174;Dels=0.00;FS=6.097;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.092;QD=19.83;ReadPosRankSum=2.393;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3450,399,0 chrXI 220819 . C A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=18.47;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3472,384,0 chrXI 220881 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.9058;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.12;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3379,375,0 chrXI 220953 . A C 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.886;QD=17.84;ReadPosRankSum=1.706;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2370,282,0 chrXI 220967 . A G 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.965;QD=18.29;ReadPosRankSum=1.704;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2264,255,0 chrXI 221090 . A C 1149 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.68;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1182,132,0 chrXI 221472 . A C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3702,420,0 chrXI 221820 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.76;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2195,240,0 chrXI 222010 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.53;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1888,219,0 chrXI 222020 . A T 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=101;Dels=0.00;FS=6.141;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.570;QD=17.95;ReadPosRankSum=2.891;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1846,207,0 chrXI 222033 . A G 2036 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.57;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2069,237,0 chrXI 222096 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.98;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2745,297,0 chrXI 222271 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.49;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2619,291,0 chrXI 222563 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.81;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3558,390,0 chrXI 223233 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=126;Dels=0.00;FS=6.113;HaplotypeScore=5.8652;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.176;QD=20.16;ReadPosRankSum=2.928;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2573,291,0 chrXI 223330 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.429;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.891;QD=21.00;ReadPosRankSum=1.598;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2196,249,0 chrXI 223904 . T C 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=118;Dels=0.00;FS=3.439;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.222;QD=21.54;ReadPosRankSum=1.703;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2575,285,0 chrXI 224066 . T A 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=2.906;HaplotypeScore=6.3869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.734;QD=23.68;ReadPosRankSum=2.316;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3088,345,0 chrXI 224890 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.77;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2297,258,0 chrXI 224949 . A T 3848.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.64;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3848,432,0 chrXI 225609 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3172,351,0 chrXI 225834 . A T 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.6406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.318;QD=21.64;ReadPosRankSum=0.895;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3593,411,0 chrXI 225909 . T A 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.336;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.897;QD=22.95;ReadPosRankSum=1.711;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3810,420,0 chrXI 226243 . A T 3046 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.25;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3079,342,0 chrXI 226531 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.45;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3643,399,0 chrXI 226659 . T C 2673 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2706,306,0 chrXI 226949 . A C 5514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=246;Dels=0.00;FS=4.935;HaplotypeScore=23.1119;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.805;QD=22.41;ReadPosRankSum=1.647;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,243:246:99:5514,624,0 chrXI 227319 . C T 7868.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=25.3015;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.35;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:0,336:337:99:7868,867,0 chrXI 227625 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.47;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3249,348,0 chrXI 227955 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3964,426,0 chrXI 228015 . A G 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.083;QD=23.41;ReadPosRankSum=1.690;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3933,447,0 chrXI 228339 . G A 5287.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.94;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5287,571,0 chrXI 228361 . G A 5361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.586;DP=270;Dels=0.00;FS=3.328;HaplotypeScore=13.6902;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.238;QD=19.86;ReadPosRankSum=-1.191;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:5361,618,0 chrXI 228576 . T C 5163.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.05;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5163,600,0 chrXI 229432 . C T 4310.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.7490;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.93;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4310,471,0 chrXI 229929 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.38;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2349,255,0 chrXI 230116 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8440;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.60;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3399,381,0 chrXI 230208 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.77;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1666,186,0 chrXI 230640 . A T 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=190;Dels=0.00;FS=8.346;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.304;QD=23.94;ReadPosRankSum=2.320;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4548,489,0 chrXI 230673 . G C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.70;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3383,378,0 chrXI 231356 . A C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=6.137;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.013;QD=21.16;ReadPosRankSum=2.406;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2424,279,0 chrXI 231739 . G C 1490 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.86;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1523,174,0 chrXI 231784 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1268,138,0 chrXI 231843 . C G 608 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,26:28:72:641,72,0 chrXI 232173 . G C 1917 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.78;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1950,219,0 chrXI 232217 . A G 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.465;QD=18.67;ReadPosRankSum=1.183;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1564,177,0 chrXI 232567 . T C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.039;QD=20.49;ReadPosRankSum=1.686;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1570,177,0 chrXI 232793 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.97;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2514,273,0 chrXI 232838 . T C 2072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=108;Dels=0.00;FS=6.142;HaplotypeScore=4.7675;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.095;QD=19.19;ReadPosRankSum=2.858;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,103:108:99:2105,234,0 chrXI 232839 . C T 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=6.144;HaplotypeScore=3.1901;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-0.035;QD=19.94;ReadPosRankSum=2.243;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2167,237,0 chrXI 233135 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.9258;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.26;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2964,327,0 chrXI 233252 . T G 4588.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.0041;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.17;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4588,534,0 chrXI 233286 . T C 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=178;Dels=0.00;FS=6.501;HaplotypeScore=12.8734;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-1.464;QD=22.11;ReadPosRankSum=2.394;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3935,456,0 chrXI 233315 . G T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.78;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3576,390,0 chrXI 233331 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.36;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3399,363,0 chrXI 233727 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.824;DP=143;Dels=0.00;FS=6.061;HaplotypeScore=12.6124;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.345;QD=22.12;ReadPosRankSum=2.951;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3196,369,0 chrXI 234252 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=16.21;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1135,132,0 chrXI 234260 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=111.2003;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=14.63;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1072,120,0 chrXI 234298 . C T 853 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=12.01;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:886,99,0 chrXI 234299 . G A 824 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=11.44;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:857,99,0 chrXI 234378 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.80;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2042,222,0 chrXI 234462 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=24.09;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3092,336,0 chrXI 234622 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=2.963;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-2.030;QD=22.78;ReadPosRankSum=2.390;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2835,318,0 chrXI 234655 . A G 3006 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.43;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3039,345,0 chrXI 234765 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.44;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4309,480,0 chrXI 234821 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.475;QD=23.14;ReadPosRankSum=1.714;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4396,501,0 chrXI 234902 . A T 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;DP=177;Dels=0.00;FS=9.058;HaplotypeScore=15.4145;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.303;QD=20.86;ReadPosRankSum=3.390;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:4,172:177:99:3693,414,0 chrXI 235232 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.64;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3696,411,0 chrXI 235318 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=385.8920;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;QD=16.07;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2412,258,0 chrXI 235400 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=17.01;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2636,294,0 chrXI 235406 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=16.09;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2576,285,0 chrXI 235420 . A C 2976 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=18.37;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3009,330,0 chrXI 235427 . T G 2920 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.60;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2953,330,0 chrXI 235565 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=23.01;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2518,282,0 chrXI 236078 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.27;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3018,336,0 chrXI 236129 . G A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.84;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3677,402,0 chrXI 236254 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.708;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.995;QD=21.54;ReadPosRankSum=1.665;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3338,396,0 chrXI 236273 . C G 3055 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.37;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3088,360,0 chrXI 236278 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.978;QD=20.01;ReadPosRankSum=1.709;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2975,333,0 chrXI 236875 . G T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3907,438,0 chrXI 238207 . A G 2715 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2748,309,0 chrXI 238513 . C G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.28;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3724,432,0 chrXI 238663 . G A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.7130;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.48;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3754,408,0 chrXI 239027 . C A 810 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:843,93,0 chrXI 239182 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.41;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:94:99:2046,243,0 chrXI 239868 . T C 2999 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3032,348,0 chrXI 240181 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.95;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3511,381,0 chrXI 240375 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3575,390,0 chrXI 240637 . G A 5397.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.03;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5397,597,0 chrXI 240758 . T G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.499;DP=223;Dels=0.00;FS=3.149;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.639;QD=17.71;ReadPosRankSum=0.660;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:3950,435,0 chrXI 240828 . C T 5299.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.0410;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.11;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5299,573,0 chrXI 241013 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.83;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3384,366,0 chrXI 241041 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.89;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2999,336,0 chrXI 241418 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4516;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.18;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3231,348,0 chrXI 241425 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.91;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3198,360,0 chrXI 241665 . C T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.85;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3912,426,0 chrXI 241707 . T G 3153 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.74;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3186,363,0 chrXI 241807 . C G 2928 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.85;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,129:134:99:2961,333,0 chrXI 241920 . T G 3134 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4740;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.39;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3167,372,0 chrXI 241961 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.74;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2854,312,0 chrXI 241962 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.28;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2832,312,0 chrXI 242055 . G C 2706 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.0830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2739,318,0 chrXI 242387 . A G 5630.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.7031;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.99;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5630,645,0 chrXI 242705 . C A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.30;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3448,375,0 chrXI 242750 . T A 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=119;Dels=0.00;FS=3.039;HaplotypeScore=8.9533;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.155;QD=20.18;ReadPosRankSum=2.284;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2434,276,0 chrXI 243020 . G A 998 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1031,114,0 chrXI 243064 . T C 426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.445;QD=16.38;ReadPosRankSum=1.589;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:1,23:26:51:459,51,0 chrXI 243364 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3217,351,0 chrXI 243556 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.89;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2375,261,0 chrXI 243712 . C A 2482 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.77;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2515,279,0 chrXI 243724 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.24;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2442,264,0 chrXI 243754 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.69;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2593,282,0 chrXI 243823 . C T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.22;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3577,399,0 chrXI 243838 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7206;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.23;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4002,426,0 chrXI 244570 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3044,339,0 chrXI 244927 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2428,270,0 chrXI 245907 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1256,147,0 chrXI 246336 . G A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.45;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3845,417,0 chrXI 246807 . A G 4994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=241;Dels=0.00;FS=2.968;HaplotypeScore=14.8850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.810;QD=20.72;ReadPosRankSum=2.408;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:2,236:241:99:4994,579,0 chrXI 246873 . T C 4746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=3.693;HaplotypeScore=11.3727;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.244;QD=21.97;ReadPosRankSum=1.700;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4746,534,0 chrXI 247464 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=22.90;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3056,342,0 chrXI 247882 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=17.98;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2011,216,0 chrXI 247889 . T A 1825 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;QD=16.15;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1858,213,0 chrXI 247896 . A G 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.979;HaplotypeScore=77.6847;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;MQRankSum=-1.480;QD=15.76;ReadPosRankSum=1.701;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1767,198,0 chrXI 247900 . A T 1583 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=87.1946;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=15.52;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1616,180,0 chrXI 247927 . G T 1003 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.27;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1036,114,0 chrXI 247931 . T C 990 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.38;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1023,114,0 chrXI 247951 . G T 864 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=9.00;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:897,102,0 chrXI 247965 . T C 813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.694;DP=102;Dels=0.00;FS=2.605;HaplotypeScore=3.5271;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;MQRankSum=-0.317;QD=7.97;ReadPosRankSum=1.268;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:846,102,0 chrXI 247983 . A T 874 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=8.25;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:907,99,0 chrXI 247987 . G A 970 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=8.82;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1003,111,0 chrXI 248004 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=12.67;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1629,177,0 chrXI 248307 . G C 1245 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=9.73;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1278,147,0 chrXI 248310 . C A 1214 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=9.71;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:1247,138,0 chrXI 248487 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7294;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.99;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3672,420,0 chrXI 248663 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=23.68;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3434,381,0 chrXI 248727 . A G 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.675;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.960;QD=20.94;ReadPosRankSum=2.945;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2693,306,0 chrXI 249447 . T A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4274,480,0 chrXI 249660 . A G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.086;QD=20.91;ReadPosRankSum=1.268;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2730,291,0 chrXI 249723 . T C 2239 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.08;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2272,258,0 chrXI 249846 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.61;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2300,264,0 chrXI 249855 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=3.040;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.744;QD=20.70;ReadPosRankSum=2.407;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2413,270,0 chrXI 249882 . A G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.524;QD=18.99;ReadPosRankSum=1.678;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2502,282,0 chrXI 249915 . T C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=114;Dels=0.00;FS=6.533;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.076;QD=18.47;ReadPosRankSum=2.407;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2139,240,0 chrXI 249960 . A G 2363 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.86;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2396,279,0 chrXI 250113 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.60;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2560,285,0 chrXI 250134 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.27;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2841,315,0 chrXI 250518 . A C 5625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=241;Dels=0.00;FS=6.073;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.604;QD=23.34;ReadPosRankSum=2.963;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5625,651,0 chrXI 250826 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.08;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4047,435,0 chrXI 250932 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.0478;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.46;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4403,510,0 chrXI 250977 . G A 4024.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=11.6256;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.48;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4024,453,0 chrXI 251644 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.3248;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=16.50;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2360,261,0 chrXI 251727 . G C 2903 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4573;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.44;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2936,342,0 chrXI 251749 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.63;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2866,315,0 chrXI 252174 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.0945;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.67;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3258,360,0 chrXI 252204 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.1091;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.24;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3009,339,0 chrXI 252966 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=21.99;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2320,252,0 chrXI 253028 . C A 2529 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.55;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2562,276,0 chrXI 253608 . A G 1693 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.51;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1726,192,0 chrXI 254095 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4933;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.56;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3887,417,0 chrXI 254358 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.02;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3960,444,0 chrXI 254796 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.07;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3345,360,0 chrXI 254951 . G C 3493.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.39;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3493,399,0 chrXI 254966 . A G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.62;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3394,393,0 chrXI 255050 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.57;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4078,459,0 chrXI 255077 . G A 5002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.4772;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.224;QD=23.93;ReadPosRankSum=0.472;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5002,546,0 chrXI 255714 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=3.472;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.874;QD=23.92;ReadPosRankSum=1.669;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2640,300,0 chrXI 256637 . G T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.85;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4107,450,0 chrXI 256761 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=181;Dels=0.00;FS=2.970;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.020;QD=21.78;ReadPosRankSum=2.368;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3942,444,0 chrXI 256790 . G T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.5940;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.42;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4198,468,0 chrXI 257249 . C A 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.973;QD=19.78;ReadPosRankSum=0.798;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3581,405,0 chrXI 257258 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.1411;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.713;QD=20.19;ReadPosRankSum=-0.924;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:3695,388,0 chrXI 257878 . T A 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=148;Dels=0.00;FS=8.648;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.789;QD=20.89;ReadPosRankSum=2.400;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3125,342,0 chrXI 257882 . T A 3017 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.81;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3050,324,0 chrXI 257970 . C A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.92;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3749,420,0 chrXI 257993 . G T 3537.01 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.9460;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.57;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3537,396,0 chrXI 258001 . T A 3280.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=7.4376;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.240;QD=20.63;ReadPosRankSum=2.419;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3280,354,0 chrXI 258002 . C A 3363.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.0149;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.63;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3363,366,0 chrXI 258116 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.64;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3380,378,0 chrXI 258561 . C T 6837.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=13.8027;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.05;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,308:310:99:6837,756,0 chrXI 258576 . T C 5970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=302;Dels=0.00;FS=2.928;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.893;QD=19.77;ReadPosRankSum=2.417;SB=-3.226e+03 GT:AD:DP:GQ:PL 1/1:2,299:302:99:5970,690,0 chrXI 258604 . A T 5996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=308;Dels=0.00;FS=6.412;HaplotypeScore=15.1319;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.348;QD=19.47;ReadPosRankSum=2.410;SB=-3.806e+03 GT:AD:DP:GQ:PL 1/1:2,305:308:99:5996,660,0 chrXI 258771 . C T 5129.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.55;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5129,585,0 chrXI 258873 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.517;QD=19.89;ReadPosRankSum=1.713;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3520,390,0 chrXI 258943 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.1707;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.19;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3141,345,0 chrXI 259176 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.63;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3125,348,0 chrXI 259177 . C G 3005 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=17.99;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3038,348,0 chrXI 259318 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.13;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3298,357,0 chrXI 259465 . T C 2098 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.1120;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=15.89;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2131,252,0 chrXI 259538 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=15.3076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.27;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1415,159,0 chrXI 259634 . C A 425 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.71;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:51:458,51,0 chrXI 259792 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=25.33;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2490,270,0 chrXI 259816 . C G 1901 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.63;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1934,231,0 chrXI 259883 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.82;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2692,285,0 chrXI 260037 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=106.4233;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.49;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2483,276,0 chrXI 260152 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=24.30;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2997,333,0 chrXI 260236 . G A 2671 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.93;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2704,285,0 chrXI 260245 . A C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.917;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.853;QD=17.85;ReadPosRankSum=1.707;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2496,291,0 chrXI 260286 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=3.688;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.211;QD=19.09;ReadPosRankSum=1.712;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3302,369,0 chrXI 260491 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=4.415;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.410;QD=21.63;ReadPosRankSum=1.618;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3287,372,0 chrXI 260530 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.87;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2975,342,0 chrXI 260745 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=25.38;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3502,390,0 chrXI 260953 . T C 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=114.3966;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=0.992;QD=17.32;ReadPosRankSum=2.851;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2267,261,0 chrXI 260992 . C T 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.883;DP=102;Dels=0.00;FS=4.523;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;MQRankSum=1.664;QD=15.92;ReadPosRankSum=1.291;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1657,186,0 chrXI 261094 . C A 2616 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.22;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2649,288,0 chrXI 261127 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=8.6039;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.05;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2661,300,0 chrXI 261192 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.03;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3533,396,0 chrXI 261356 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=207;Dels=0.00;FS=13.783;HaplotypeScore=8.5027;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.156;QD=21.72;ReadPosRankSum=3.375;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:4,202:207:99:4497,522,0 chrXI 261609 . G C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.2274;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.71;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3548,396,0 chrXI 262136 . C A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.77;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3589,402,0 chrXI 262447 . T C 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.4122;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.590;QD=22.48;ReadPosRankSum=1.637;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4114,471,0 chrXI 262597 . A G 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=212;Dels=0.00;FS=15.815;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=-1.457;QD=21.91;ReadPosRankSum=3.402;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:4,205:212:99:4644,537,0 chrXI 262641 . A T 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.732;QD=22.10;ReadPosRankSum=1.690;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3624,396,0 chrXI 263151 . C G 4525.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.5091;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.07;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4525,516,0 chrXI 263194 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.84;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3654,405,0 chrXI 263873 . A G 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=3.601;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.488;QD=21.57;ReadPosRankSum=1.713;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3905,447,0 chrXI 263933 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=151;Dels=0.00;FS=3.016;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.220;QD=23.44;ReadPosRankSum=2.417;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3540,396,0 chrXI 264063 . A G 3796.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1159;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.33;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3796,438,0 chrXI 264354 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.19;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2597,282,0 chrXI 264362 . T C 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.945;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=0.112;QD=19.37;ReadPosRankSum=1.676;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2474,279,0 chrXI 264372 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=132;Dels=0.00;FS=7.976;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=0.214;QD=18.57;ReadPosRankSum=2.412;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2484,276,0 chrXI 264393 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=17.57;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2089,237,0 chrXI 264463 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=11.7994;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=14.74;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1374,153,0 chrXI 264513 . A T 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.042;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.300;QD=22.00;ReadPosRankSum=1.666;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2321,255,0 chrXI 264611 . T G 2224 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=23.17;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2257,258,0 chrXI 264644 . T G 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.2234;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.223;QD=21.48;ReadPosRankSum=1.698;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2224,249,0 chrXI 264812 . C A 2151 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=15.36;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2184,240,0 chrXI 264824 . T C 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-0.291;QD=17.43;ReadPosRankSum=1.707;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2421,276,0 chrXI 264857 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=2.999;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-0.595;QD=16.95;ReadPosRankSum=2.372;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:2762,309,0 chrXI 264863 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=16.73;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2827,315,0 chrXI 264974 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.97;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4089,456,0 chrXI 265409 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.68;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3143,342,0 chrXI 265522 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.10;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3732,405,0 chrXI 265706 . A T 1525 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=15.72;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1558,183,0 chrXI 265911 . C T 584 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.84;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:69:617,69,0 chrXI 265955 . G A 477 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.68;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:57:510,57,0 chrXI 266175 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.19;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1919,222,0 chrXI 266189 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.59;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2443,264,0 chrXI 266523 . A G 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.074;QD=18.34;ReadPosRankSum=1.688;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1500,168,0 chrXI 266888 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.16;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2958,312,0 chrXI 267033 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.63;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2590,291,0 chrXI 267161 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.11;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3010,327,0 chrXI 267180 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=130;Dels=0.00;FS=2.993;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.104;QD=21.70;ReadPosRankSum=2.412;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2854,321,0 chrXI 267483 . T C 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.796;QD=20.60;ReadPosRankSum=1.670;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2340,267,0 chrXI 267501 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=20.17;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2393,270,0 chrXI 267504 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=19.92;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2383,270,0 chrXI 267528 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.9721;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.19;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2415,267,0 chrXI 267712 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.10;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3766,399,0 chrXI 267738 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.933;QD=21.97;ReadPosRankSum=1.688;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3427,384,0 chrXI 267822 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3023,321,0 chrXI 268389 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.04;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2546,285,0 chrXI 268550 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.73;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2749,297,0 chrXI 269100 . T C 2394 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2427,270,0 chrXI 269301 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.65;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3249,381,0 chrXI 269524 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.5282;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.48;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2859,309,0 chrXI 270178 . G C 3105 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.87;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3138,351,0 chrXI 270231 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7549;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.99;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3278,381,0 chrXI 270276 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3949,438,0 chrXI 270852 . A G 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=7.751;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.227;QD=22.32;ReadPosRankSum=2.342;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2578,297,0 chrXI 271065 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.43;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2712,294,0 chrXI 271129 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.55;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2536,282,0 chrXI 271321 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.04;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2237,249,0 chrXI 271504 . A G 2687 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.5137;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.21;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2720,312,0 chrXI 271548 . A C 3092 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.07;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3125,357,0 chrXI 271718 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.51;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4162,471,0 chrXI 272320 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:3039,324,0 chrXI 272494 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.7284;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3500,381,0 chrXI 272535 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.173;QD=23.54;ReadPosRankSum=1.683;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3296,357,0 chrXI 272996 . A G 2093 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.03;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2126,249,0 chrXI 273068 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.5444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2234,246,0 chrXI 273176 . C T 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.9239;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.692;QD=21.26;ReadPosRankSum=-0.498;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1883,207,0 chrXI 273206 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.65;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2232,252,0 chrXI 273474 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.66;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3853,429,0 chrXI 273882 . A G 4404.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.3206;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4404,501,0 chrXI 274746 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.88;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3844,432,0 chrXI 274971 . A G 5677.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.4110;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.47;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5677,630,0 chrXI 275624 . G T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=20.1752;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.71;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4104,450,0 chrXI 275743 . T A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.94;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4794,534,0 chrXI 276092 . G A 3145 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.42;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3178,342,0 chrXI 276098 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3886;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.53;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3112,342,0 chrXI 276275 . T A 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=131;Dels=0.00;FS=6.257;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.554;QD=21.68;ReadPosRankSum=2.412;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2873,321,0 chrXI 276368 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.95;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3692,405,0 chrXI 276893 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=5.669;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.190;QD=18.10;ReadPosRankSum=1.711;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3056,363,0 chrXI 276968 . G C 4111.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.95;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4111,485,0 chrXI 277058 . T A 779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=89;Dels=0.00;FS=69.638;HaplotypeScore=18.6263;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.499;QD=8.75;ReadPosRankSum=0.323;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:16,73:89:93:812,93,0 chrXI 277106 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.48;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1548,180,0 chrXI 277294 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.77;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2720,303,0 chrXI 277663 . G C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.38;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3424,396,0 chrXI 277694 . G T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=22.21;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3331,363,0 chrXI 277704 . A G 2890 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.40;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2923,336,0 chrXI 277738 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=3.741;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.701;QD=18.46;ReadPosRankSum=1.650;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3134,369,0 chrXI 277754 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=2.993;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-0.567;QD=17.96;ReadPosRankSum=2.363;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3105,348,0 chrXI 277761 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=19.59;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3369,363,0 chrXI 277809 . A G 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.4524;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.946;QD=19.77;ReadPosRankSum=1.607;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:3856,432,0 chrXI 277967 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=139.1109;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=22.06;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3750,417,0 chrXI 278042 . G C 3188 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.1105;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.86;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3221,363,0 chrXI 278119 . C A 2560 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.00;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2593,294,0 chrXI 278179 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.92;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3102,348,0 chrXI 278223 . T A 2777 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=20.42;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2810,312,0 chrXI 278251 . A G 67.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.275;DP=127;Dels=0.00;FS=1.436;HaplotypeScore=109.9132;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;MQRankSum=1.235;QD=0.53;ReadPosRankSum=4.580;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:8,119:127:12:100,12,0 chrXI 278363 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.93;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3105,339,0 chrXI 278388 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.42;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2280,252,0 chrXI 278406 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.1428;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=16.51;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2443,276,0 chrXI 278445 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=12.69;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:1771,204,0 chrXI 278448 . T C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0388;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;MQRankSum=-1.476;QD=10.46;ReadPosRankSum=2.952;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:3,144:147:99:1570,183,0 chrXI 278756 . A C 1979 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=16.91;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2012,234,0 chrXI 278761 . C A 1839 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=17.35;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1872,207,0 chrXI 278762 . T C 1777 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;MQRankSum=-1.105;QD=16.92;ReadPosRankSum=1.699;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1810,207,0 chrXI 278767 . T C 1751 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=15.77;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1784,201,0 chrXI 278776 . G C 1718 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=3.3321;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=15.20;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1751,198,0 chrXI 278902 . T A 1651 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.13;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1684,183,0 chrXI 278996 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=148;Dels=0.00;FS=6.477;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=0.042;QD=20.63;ReadPosRankSum=2.349;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3086,363,0 chrXI 279017 . T A 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.514;QD=22.14;ReadPosRankSum=1.708;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3243,357,0 chrXI 279067 . G T 2926 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.00;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2959,327,0 chrXI 279099 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.2914;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=18.28;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2610,288,0 chrXI 279188 . T C 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.0939;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.272;QD=23.35;ReadPosRankSum=1.717;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5230,597,0 chrXI 279367 . A G 5955.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.73;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5955,663,0 chrXI 279467 . C T 4880.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=20.7950;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.85;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:4880,549,0 chrXI 279551 . T C 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=257;Dels=0.00;FS=3.044;HaplotypeScore=11.9462;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.609;QD=19.21;ReadPosRankSum=1.651;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:4936,552,0 chrXI 279656 . A G 5674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=246;Dels=0.00;FS=7.758;HaplotypeScore=12.1527;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.033;QD=23.07;ReadPosRankSum=2.410;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:5674,633,0 chrXI 279830 . T C 6590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=19.0891;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.411;QD=22.57;ReadPosRankSum=1.708;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:1,290:292:99:6590,762,0 chrXI 280076 . A C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.114;QD=20.88;ReadPosRankSum=1.675;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2601,306,0 chrXI 280396 . A G 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;DP=72;Dels=0.03;FS=4.168;HaplotypeScore=60.5562;MLEAC=1;MLEAF=0.500;MQ=57.47;MQ0=0;MQRankSum=0.245;QD=0.99;ReadPosRankSum=-3.727;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:54,16:70:99:101,0,1037 chrXI 280523 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.08;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2329,258,0 chrXI 280538 . A G 2146 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.33;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2179,258,0 chrXI 280749 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.83;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2393,279,0 chrXI 281006 . G A 420 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.09;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:51:453,51,0 chrXI 281154 . G T 2512 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.70;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2545,279,0 chrXI 281172 . A G 2270 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.83;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2303,261,0 chrXI 281247 . A G 2821 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.46;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2854,333,0 chrXI 281307 . C T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4528,486,0 chrXI 281630 . T C 3156 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.04;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3189,363,0 chrXI 281745 . G T 2793 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.82;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2826,312,0 chrXI 281858 . C G 2727 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2760,315,0 chrXI 282240 . A G 2834 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.0460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2867,336,0 chrXI 282383 . G T 2153 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2186,237,0 chrXI 282489 . A T 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=4.006;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.190;QD=22.01;ReadPosRankSum=1.690;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1860,204,0 chrXI 282696 . T C 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.680;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.501;QD=20.67;ReadPosRankSum=1.699;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2203,252,0 chrXI 282982 . T C 2772 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.49;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2805,312,0 chrXI 283085 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9014;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.18;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2838,306,0 chrXI 283167 . C A 2488 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.25;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2521,270,0 chrXI 283186 . A G 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.283;QD=20.43;ReadPosRankSum=1.636;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2260,258,0 chrXI 283395 . A G 3053 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.65;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3086,351,0 chrXI 283403 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.53;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2961,327,0 chrXI 283495 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.42;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3677,402,0 chrXI 283662 . T A 6175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.956;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=20.1400;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.924;QD=23.30;ReadPosRankSum=1.430;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:4,261:265:99:6175,661,0 chrXI 283710 . C G 5543.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.9501;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.44;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:5543,633,0 chrXI 283762 . T C 5245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=244;Dels=0.00;FS=6.671;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.429;QD=21.50;ReadPosRankSum=2.389;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:5245,588,0 chrXI 283904 . T C 5657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=254;Dels=0.00;FS=6.918;HaplotypeScore=17.0925;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.201;QD=22.27;ReadPosRankSum=2.391;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:2,248:254:99:5657,630,0 chrXI 284248 . T C 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=210;Dels=0.00;FS=6.005;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.771;QD=21.25;ReadPosRankSum=2.946;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:3,203:210:99:4463,510,0 chrXI 284656 . A C 1285 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1318,147,0 chrXI 284914 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.75;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3104,345,0 chrXI 285158 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.11;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2321,270,0 chrXI 285242 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9731;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.259;QD=22.32;ReadPosRankSum=1.591;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2845,327,0 chrXI 285308 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.48;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3250,369,0 chrXI 285338 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.4859;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.69;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3028,345,0 chrXI 285383 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.66;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2676,297,0 chrXI 286292 . C T 107.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=11.92;SB=-8.014e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:140,15,0 chrXI 286298 . G A 120.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=12.01;SB=-8.307e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:153,18,0 chrXI 286522 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.58;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1613,180,0 chrXI 286581 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1944,213,0 chrXI 287276 . C G 3098 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.29;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3131,354,0 chrXI 287380 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.32;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2146,234,0 chrXI 287397 . G T 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.203;DP=111;Dels=0.00;FS=4.019;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.139;QD=22.18;ReadPosRankSum=-1.451;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2495,252,0 chrXI 287430 . G A 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;DP=133;Dels=0.00;FS=5.006;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.341;QD=21.82;ReadPosRankSum=1.003;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2935,306,0 chrXI 287510 . A T 2718 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.17;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2751,303,0 chrXI 287715 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.55;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2516,288,0 chrXI 287808 . A G 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=109;Dels=0.00;FS=3.522;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.059;QD=22.84;ReadPosRankSum=1.668;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2523,288,0 chrXI 288159 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.12;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3907,432,0 chrXI 288425 . T G 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=132;Dels=0.00;FS=3.319;HaplotypeScore=12.7976;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.674;QD=20.67;ReadPosRankSum=1.600;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2762,309,0 chrXI 288741 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2172,237,0 chrXI 289501 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=184;Dels=0.00;FS=2.919;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.649;QD=21.70;ReadPosRankSum=2.423;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3992,450,0 chrXI 289528 . T A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.19;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3861,432,0 chrXI 289859 . G C 4553.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4553,507,0 chrXI 291136 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3268,357,0 chrXI 292055 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.21;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2964,327,0 chrXI 292695 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1976,216,0 chrXI 293072 . G A 4985.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.5889;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4985,543,0 chrXI 293792 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.753;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.064;QD=22.81;ReadPosRankSum=1.707;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3249,363,0 chrXI 295309 . T C 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=137;Dels=0.00;FS=3.680;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.612;QD=22.70;ReadPosRankSum=1.706;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:3143,351,0 chrXI 296531 . C G 2703 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.6036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.26;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2736,327,0 chrXI 297280 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.2864;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.13;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3673,402,0 chrXI 297330 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.80;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2745,309,0 chrXI 297401 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8114;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.75;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3250,357,0 chrXI 297512 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.3744;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.55;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4075,453,0 chrXI 297561 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.27;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3737,417,0 chrXI 298637 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.09;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1933,210,0 chrXI 298924 . A G 1643 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.47;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1676,189,0 chrXI 299008 . T C 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=6.223;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.669;QD=20.37;ReadPosRankSum=1.693;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1826,201,0 chrXI 299201 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.34;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1323,147,0 chrXI 300874 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=177;Dels=0.00;FS=2.989;HaplotypeScore=16.4293;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.221;QD=22.52;ReadPosRankSum=2.352;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3986,447,0 chrXI 300931 . A G 4820.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.72;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4820,531,0 chrXI 301521 . A G 2957 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.57;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2990,336,0 chrXI 301932 . T C 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=5.465;HaplotypeScore=9.3181;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.653;QD=19.73;ReadPosRankSum=1.693;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1809,216,0 chrXI 302097 . T C 2262 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=25.13;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2295,255,0 chrXI 302158 . A T 967 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=21.02;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1000,114,0 chrXI 302180 . C T 887 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=20.63;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:920,102,0 chrXI 302296 . A G 282 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=5.42;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,50:52:36:315,36,0 chrXI 302470 . G T 2222 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=21.57;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2255,246,0 chrXI 302490 . T A 2468 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=20.40;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2501,279,0 chrXI 302515 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.83;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2824,315,0 chrXI 303165 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.15;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2163,237,0 chrXI 303454 . A C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.24;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3830,420,0 chrXI 303559 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=199;Dels=0.00;FS=10.500;HaplotypeScore=12.9086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.548;QD=22.55;ReadPosRankSum=2.883;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4488,510,0 chrXI 304896 . T C 157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.268;DP=155;Dels=0.00;FS=1.583;HaplotypeScore=4.8810;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=0.112;QD=1.01;ReadPosRankSum=-6.633;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:119,34:155:99:187,0,2431 chrXI 304908 . C T 483.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DP=155;Dels=0.00;FS=1.371;HaplotypeScore=5.8040;MLEAC=1;MLEAF=0.500;MQ=55.37;MQ0=0;MQRankSum=0.626;QD=3.12;ReadPosRankSum=-5.564;SB=-3.250e+02 GT:AD:DP:GQ:PL 0/1:105,50:155:99:513,0,2125 chrXI 304949 . T A 591.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;DP=153;Dels=0.00;FS=8.167;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=55.31;MQ0=0;MQRankSum=-0.041;QD=3.86;ReadPosRankSum=-8.766;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:105,48:153:99:621,0,1866 chrXI 305056 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.728;QD=22.03;ReadPosRankSum=1.700;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2412,267,0 chrXI 305729 . C A 2923 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.5998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2956,327,0 chrXI 306214 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=166;Dels=0.00;FS=2.996;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.777;QD=22.07;ReadPosRankSum=2.420;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3664,417,0 chrXI 306453 . T G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.49;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3571,396,0 chrXI 307466 . C G 4720.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.08;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4720,534,0 chrXI 307562 . T C 5088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.228;QD=22.32;ReadPosRankSum=1.717;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5088,582,0 chrXI 307722 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.58;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4186,459,0 chrXI 307923 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=118;Dels=0.00;FS=6.940;HaplotypeScore=7.2515;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.160;QD=21.92;ReadPosRankSum=2.386;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,113:118:99:2620,297,0 chrXI 307947 . T G 2527 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.18;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2560,288,0 chrXI 308031 . T A 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=140;Dels=0.00;FS=14.390;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.244;QD=21.78;ReadPosRankSum=2.633;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:3082,342,0 chrXI 308042 . T C 3063 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.4735;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.27;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3096,363,0 chrXI 308234 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.80;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3853,432,0 chrXI 308325 . G T 5058.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.55;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5058,558,0 chrXI 308425 . T C 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=207;Dels=0.00;FS=4.065;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.272;QD=22.76;ReadPosRankSum=1.715;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:4712,537,0 chrXI 308754 . T G 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=199;Dels=0.00;FS=7.016;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.401;QD=22.90;ReadPosRankSum=2.376;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4558,504,0 chrXI 309009 . C T 5921.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.6859;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.27;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5921,648,0 chrXI 309090 . T A 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9273;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.212;QD=23.81;ReadPosRankSum=1.683;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3333,372,0 chrXI 309188 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=4.446;HaplotypeScore=13.4386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.757;QD=22.02;ReadPosRankSum=1.698;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4558,519,0 chrXI 309294 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.58;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3186,342,0 chrXI 309310 . T C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.820;QD=18.55;ReadPosRankSum=1.709;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2871,324,0 chrXI 309751 . T G 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=104;Dels=0.00;FS=2.784;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.154;QD=19.10;ReadPosRankSum=2.331;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2019,231,0 chrXI 309823 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=5.198;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.134;QD=25.05;ReadPosRankSum=1.707;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3482,384,0 chrXI 310373 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.8648;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.70;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3654,405,0 chrXI 310507 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.30;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2936,336,0 chrXI 310702 . C A 2998 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.1355;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.98;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3031,321,0 chrXI 310798 . C A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.3284;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.90;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3613,402,0 chrXI 310828 . A T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.60;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3542,393,0 chrXI 310861 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=177;Dels=0.00;FS=7.609;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.936;QD=21.07;ReadPosRankSum=2.422;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3729,426,0 chrXI 310963 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.994;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.055;QD=20.18;ReadPosRankSum=-0.102;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3241,346,0 chrXI 311155 . A G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=142;Dels=0.00;FS=9.171;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;MQRankSum=-2.595;QD=16.35;ReadPosRankSum=3.397;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:4,138:142:99:2354,267,0 chrXI 311174 . T G 1330.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.259;DP=229;Dels=0.00;FS=5.434;HaplotypeScore=12.7750;MLEAC=1;MLEAF=0.500;MQ=32.82;MQ0=0;MQRankSum=-0.789;QD=5.81;ReadPosRankSum=-12.264;SB=-1.050e+03 GT:AD:DP:GQ:PL 0/1:115,113:229:73:1360,0,73 chrXI 311233 . G C 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.941;DP=167;Dels=0.00;FS=28.311;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=4.266;QD=17.25;ReadPosRankSum=5.780;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:27,139:167:99:2914,321,0 chrXI 311278 . T C 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7780;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;MQRankSum=-1.290;QD=20.37;ReadPosRankSum=1.360;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,148:153:99:3149,369,0 chrXI 311294 . A C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=137;Dels=0.00;FS=4.346;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;MQRankSum=-0.560;QD=20.74;ReadPosRankSum=1.707;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2875,321,0 chrXI 311331 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=20.0209;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=20.08;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2964,339,0 chrXI 311431 . A T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.23;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4309,465,0 chrXI 311476 . C G 5015.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=10.4629;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.64;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,239:243:99:5015,588,0 chrXI 311502 . A G 5183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.176;DP=256;Dels=0.00;FS=27.620;HaplotypeScore=12.0194;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-0.658;QD=20.25;ReadPosRankSum=4.170;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:6,249:256:99:5183,579,0 chrXI 311526 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=245;Dels=0.00;FS=2.737;HaplotypeScore=17.4701;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=-0.226;QD=17.88;ReadPosRankSum=2.369;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:2,242:245:99:4381,504,0 chrXI 311562 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.5827;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=16.96;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:3985,447,0 chrXI 311590 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=17.39;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:3877,429,0 chrXI 311614 . C G 3821.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.8733;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=16.69;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:3821,450,0 chrXI 311668 . A G 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=264;Dels=0.00;FS=2.977;HaplotypeScore=14.9210;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-0.792;QD=19.09;ReadPosRankSum=2.412;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:2,260:264:99:5041,570,0 chrXI 311695 . A G 5268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.628;QD=19.23;ReadPosRankSum=1.669;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:5268,615,0 chrXI 311735 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.0017;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=18.13;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4460,507,0 chrXI 311744 . T G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.828;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.8736;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=1.250;QD=17.23;ReadPosRankSum=-1.566;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,229:234:99:4032,432,0 chrXI 311806 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=19.29;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:3877,417,0 chrXI 311820 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=18.50;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:3736,417,0 chrXI 311897 . A G 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=173;Dels=0.00;FS=2.568;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-1.390;QD=19.32;ReadPosRankSum=2.960;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3342,384,0 chrXI 311898 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=-0.394;QD=19.60;ReadPosRankSum=1.594;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3470,393,0 chrXI 311916 . A T 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=-0.371;QD=18.85;ReadPosRankSum=1.650;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3200,348,0 chrXI 311975 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=20.3168;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.671;QD=20.13;ReadPosRankSum=-0.531;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3523,405,0 chrXI 312016 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.63;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3598,390,0 chrXI 312103 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=24.21;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3510,381,0 chrXI 312130 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.58;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2832,324,0 chrXI 312273 . G A 2625 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.06;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2658,288,0 chrXI 312289 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.54;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2738,312,0 chrXI 312511 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.17;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3747,417,0 chrXI 312545 . T G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.58;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3499,390,0 chrXI 312553 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.085;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.525;QD=20.02;ReadPosRankSum=1.692;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3504,402,0 chrXI 312734 . A C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.554;QD=22.48;ReadPosRankSum=1.591;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3349,378,0 chrXI 313024 . T C 2253 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=23.97;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2286,261,0 chrXI 313063 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.43;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1978,210,0 chrXI 313073 . A C 1940 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.56;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1973,219,0 chrXI 313195 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=17.36;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1804,201,0 chrXI 313203 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=15.18;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1581,177,0 chrXI 313226 . A G 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=115;Dels=0.00;FS=10.019;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-0.991;QD=15.17;ReadPosRankSum=2.297;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:2,111:115:99:1777,193,0 chrXI 313299 . T C 1628 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=22.61;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1661,195,0 chrXI 313318 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=25.62;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1442,156,0 chrXI 313345 . G T 828 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;QD=19.26;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:861,96,0 chrXI 313349 . T C 740 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=19.47;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:773,87,0 chrXI 313365 . C T 771 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=20.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:90:804,90,0 chrXI 313367 . G A 789 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=19.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:90:822,90,0 chrXI 313486 . G A 844 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=17.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:877,99,0 chrXI 313489 . T G 829 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=46;Dels=0.00;FS=16.435;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=-1.732;QD=18.02;ReadPosRankSum=1.654;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,43:46:99:862,99,0 chrXI 313523 . T A 48.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=16.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:81,9,0 chrXI 313544 . A C 98.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=19.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:131,15,0 chrXI 313602 . G A 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=13.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:59,6,0 chrXI 313868 . G T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:80,9,0 chrXI 313869 . C G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:78,9,0 chrXI 313870 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:77,9,0 chrXI 313873 . T G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:74,9,0 chrXI 313874 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:80,9,0 chrXI 313985 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=21.82;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1691,183,0 chrXI 313997 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=3.059;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;MQRankSum=0.746;QD=23.25;ReadPosRankSum=2.389;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1916,213,0 chrXI 314119 . G C 1765 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=22.92;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1798,204,0 chrXI 314126 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;QD=22.19;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1542,180,0 chrXI 314131 . T C 1538 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=22.62;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1571,186,0 chrXI 314163 . A G 1196 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=21.36;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1229,144,0 chrXI 314607 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=21.32;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2463,273,0 chrXI 314694 . A G 2274 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=21.87;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2307,255,0 chrXI 314713 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=21.33;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2123,237,0 chrXI 314752 . T C 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-1.339;QD=20.55;ReadPosRankSum=1.696;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2026,234,0 chrXI 314787 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.10;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2000,219,0 chrXI 314820 . T C 2283 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.18;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2316,258,0 chrXI 314906 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.63;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3285,372,0 chrXI 315021 . G A 4598.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5928;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=24.99;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4598,495,0 chrXI 315068 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.17;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3328,360,0 chrXI 315069 . A G 3196 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.49;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3229,360,0 chrXI 315107 . G C 3164 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.5750;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=18.83;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3197,357,0 chrXI 315617 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=166;Dels=0.00;FS=2.712;HaplotypeScore=140.0908;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-0.659;QD=22.05;ReadPosRankSum=2.420;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3660,408,0 chrXI 315654 . G C 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=22.0326;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.668;QD=21.50;ReadPosRankSum=0.339;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3913,435,0 chrXI 315726 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=177;Dels=0.00;FS=2.827;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;MQRankSum=-0.854;QD=22.51;ReadPosRankSum=2.408;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3985,444,0 chrXI 315777 . A G 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=135;Dels=0.00;FS=2.630;HaplotypeScore=117.9606;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;MQRankSum=-1.606;QD=0.31;ReadPosRankSum=2.358;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:9:74,9,0 chrXI 315792 . T C 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=4.342;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;MQRankSum=-1.372;QD=18.40;ReadPosRankSum=1.704;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2333,261,0 chrXI 315805 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=18.88;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2204,240,0 chrXI 315840 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=15.65;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1473,162,0 chrXI 315844 . T C 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.63;MQ0=0;MQRankSum=-0.332;QD=13.71;ReadPosRankSum=1.697;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1390,165,0 chrXI 315867 . A G 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;MQRankSum=-0.499;QD=15.09;ReadPosRankSum=1.703;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1814,207,0 chrXI 315893 . G T 1711 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=13.69;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1744,198,0 chrXI 315895 . C T 1784 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=14.50;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1817,201,0 chrXI 315903 . C T 1613 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=13.33;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1646,186,0 chrXI 315904 . T A 1607 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=13.28;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1640,186,0 chrXI 315915 . A G 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;MQRankSum=0.723;QD=12.61;ReadPosRankSum=1.705;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1635,183,0 chrXI 315977 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=17.00;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1461,165,0 chrXI 315983 . A G 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=84;Dels=0.00;FS=3.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;MQRankSum=0.836;QD=17.70;ReadPosRankSum=2.391;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1520,168,0 chrXI 316142 . T C 1917 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=22.82;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1950,222,0 chrXI 316198 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=21.82;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1255,141,0 chrXI 316238 . A T 698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=63.8669;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;MQRankSum=-1.417;QD=15.86;ReadPosRankSum=1.654;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:78:731,78,0 chrXI 316255 . C T 529 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=13.92;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:562,60,0 chrXI 316261 . C T 596 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=14.54;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:69:629,69,0 chrXI 316332 . A G 850 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=15.45;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:883,99,0 chrXI 316346 . A G 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;MQRankSum=-0.289;QD=13.90;ReadPosRankSum=1.675;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:867,99,0 chrXI 316351 . A C 887 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=15.03;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:920,108,0 chrXI 316362 . C A 897 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=15.47;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:930,102,0 chrXI 316511 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=24.27;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2193,240,0 chrXI 316643 . C T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.17;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3600,393,0 chrXI 316707 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.575;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.365;QD=22.73;ReadPosRankSum=2.378;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3170,363,0 chrXI 316845 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.85;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3496,390,0 chrXI 317019 . A G 3093 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.3735;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.09;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3126,363,0 chrXI 317375 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.754;QD=22.30;ReadPosRankSum=1.690;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3635,414,0 chrXI 317549 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.86;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3234,354,0 chrXI 317644 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.4774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3561,384,0 chrXI 317712 . C G 4797.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.84;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4797,531,0 chrXI 317831 . A G 4519.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4519,528,0 chrXI 318297 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.09;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4144,474,0 chrXI 318732 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=186;Dels=0.00;FS=3.807;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.564;QD=22.34;ReadPosRankSum=1.713;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4155,465,0 chrXI 318939 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.22;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2580,288,0 chrXI 319126 . A G 3049 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.59;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3082,348,0 chrXI 319143 . T C 2915 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.60;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2948,327,0 chrXI 319554 . C A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.84;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3358,363,0 chrXI 319577 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.5902;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.65;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3377,372,0 chrXI 319692 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.11;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4143,453,0 chrXI 320103 . C A 6875.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=19.0772;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.84;SB=-3.577e+03 GT:AD:DP:GQ:PL 1/1:0,300:301:99:6875,762,0 chrXI 320335 . G T 5858.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.01;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5858,622,0 chrXI 320400 . A G 4918.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.05;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4918,546,0 chrXI 320565 . G A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.47;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3821,432,0 chrXI 321042 . C G 2742 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.04;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2775,327,0 chrXI 321333 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.073;QD=20.61;ReadPosRankSum=1.635;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2960,342,0 chrXI 321345 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.07;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2924,324,0 chrXI 321631 . T C 2667 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=21.68;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2700,306,0 chrXI 321646 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=22.54;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2738,291,0 chrXI 321711 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=16.63;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2012,228,0 chrXI 321714 . T C 1883 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=16.52;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1916,222,0 chrXI 321847 . T C 1519 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=10.33;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1552,174,0 chrXI 321853 . C A 1573 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=11.16;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1606,174,0 chrXI 321982 . T A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=23.53;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4306,486,0 chrXI 322024 . C A 4268.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=22.11;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4268,480,0 chrXI 322047 . A C 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=177;Dels=0.00;FS=3.479;HaplotypeScore=12.0542;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=1.161;QD=20.66;ReadPosRankSum=1.712;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3656,429,0 chrXI 322176 . T C 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=6.761;HaplotypeScore=10.3181;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.200;QD=23.23;ReadPosRankSum=2.367;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4181,468,0 chrXI 322974 . C G 1623 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.23;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1656,192,0 chrXI 323019 . A T 1325 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.93;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1358,153,0 chrXI 323096 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.78;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1633,177,0 chrXI 323120 . A C 1398 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=19.97;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1431,156,0 chrXI 323165 . T C 734 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=9.92;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:90:767,90,0 chrXI 323178 . C T 766 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=9.57;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:84:799,84,0 chrXI 323187 . G A 796 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1523;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=9.26;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:93:829,93,0 chrXI 323380 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=23.28;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3375,375,0 chrXI 323565 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.049;DP=147;Dels=0.00;FS=3.348;HaplotypeScore=10.6950;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.365;QD=23.12;ReadPosRankSum=-1.402;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3399,362,0 chrXI 323761 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3455,387,0 chrXI 323867 . A T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4200,456,0 chrXI 324133 . A G 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.504;DP=175;Dels=0.00;FS=12.086;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.459;QD=22.10;ReadPosRankSum=3.702;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:5,169:175:99:3868,435,0 chrXI 324276 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.15;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3427,378,0 chrXI 324286 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9697;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.144;QD=21.37;ReadPosRankSum=1.689;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3440,393,0 chrXI 324317 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.204;DP=199;Dels=0.00;FS=8.352;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.468;QD=20.26;ReadPosRankSum=3.337;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:4,194:199:99:4031,456,0 chrXI 324419 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.46;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3645,390,0 chrXI 324667 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.052;QD=19.77;ReadPosRankSum=1.684;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,213:217:99:4290,489,0 chrXI 324673 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.98;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4081,468,0 chrXI 324894 . G C 5708.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.74;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5708,657,0 chrXI 325158 . C G 2679 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.14;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2712,303,0 chrXI 325747 . A T 2845 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.88;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2878,312,0 chrXI 325756 . G T 2684 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.74;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2717,294,0 chrXI 326243 . T C 1348 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=22.47;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1381,150,0 chrXI 326248 . A T 1372 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=22.49;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1405,159,0 chrXI 326278 . C A 1000 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=21.74;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1033,114,0 chrXI 326312 . A G 544 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;MQRankSum=-1.733;QD=18.76;ReadPosRankSum=1.614;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:66:577,66,0 chrXI 326313 . C T 575 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;QD=20.54;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,27:28:66:608,66,0 chrXI 326320 . T G 370 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=16.82;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:45:403,45,0 chrXI 326578 . C T 5260.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.13;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5260,576,0 chrXI 326734 . C T 6256.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.87;SB=-3.312e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6256,682,0 chrXI 326759 . T G 7020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=12.4267;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.181;QD=20.89;ReadPosRankSum=2.628;SB=-4.011e+03 GT:AD:DP:GQ:PL 1/1:3,329:336:99:7020,789,0 chrXI 326807 . G A 8122.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=20.2333;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.50;SB=-4.776e+03 GT:AD:DP:GQ:PL 1/1:0,360:361:99:8122,888,0 chrXI 327038 . G A 7380.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=25.7518;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.16;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:0,331:333:99:7380,819,0 chrXI 327648 . G C 2815 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.33;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2848,321,0 chrXI 327663 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.57;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2636,300,0 chrXI 327707 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5833;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=18.52;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2718,297,0 chrXI 327893 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=22.17;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4235,474,0 chrXI 327982 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.38;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4683,531,0 chrXI 327998 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=241;Dels=0.00;FS=7.039;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-1.529;QD=19.45;ReadPosRankSum=2.429;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:2,238:241:99:4687,522,0 chrXI 328028 . C G 4926.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=17.59;SB=-3.272e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:4926,555,0 chrXI 328041 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=286;Dels=0.00;FS=5.872;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;MQRankSum=-1.539;QD=16.07;ReadPosRankSum=2.933;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:3,282:286:99:4596,513,0 chrXI 328057 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=15.34;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:4204,468,0 chrXI 328076 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=2.3983;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=15.55;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:4028,450,0 chrXI 328102 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.32;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:3862,426,0 chrXI 328199 . G A 5564.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.6169;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.16;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5564,604,0 chrXI 328292 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.562;DP=198;Dels=0.00;FS=7.757;HaplotypeScore=10.8265;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=0.200;QD=17.78;ReadPosRankSum=3.810;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:5,191:198:99:3520,408,0 chrXI 328373 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=201;Dels=0.00;FS=3.442;HaplotypeScore=10.3810;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.336;QD=19.16;ReadPosRankSum=1.646;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3852,432,0 chrXI 328613 . T C 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=3.458;HaplotypeScore=6.2630;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.532;QD=18.69;ReadPosRankSum=1.415;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2893,324,0 chrXI 328619 . A T 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.342;QD=19.34;ReadPosRankSum=1.661;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2876,324,0 chrXI 328709 . G C 2744 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.6991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2777,312,0 chrXI 329482 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=3.906;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.343;QD=21.55;ReadPosRankSum=1.713;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3814,429,0 chrXI 329573 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.73;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3249,363,0 chrXI 329586 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.41;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3139,366,0 chrXI 329590 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.60;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3189,375,0 chrXI 329645 . T A 2854 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=18.41;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2887,315,0 chrXI 329681 . A T 2333 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;MQRankSum=-1.623;QD=19.12;ReadPosRankSum=2.389;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2366,255,0 chrXI 329685 . C T 2115 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=18.72;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2148,243,0 chrXI 329686 . T A 2198 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=19.62;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2231,249,0 chrXI 329718 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=20.03;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1956,219,0 chrXI 329802 . G A 1529 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=18.20;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1562,174,0 chrXI 329804 . G T 1459 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=18.01;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1492,171,0 chrXI 329812 . A T 1391 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=17.61;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1424,159,0 chrXI 329815 . T C 1361 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=17.91;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1394,159,0 chrXI 329885 . A G 905 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=14.84;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:938,108,0 chrXI 329892 . A G 821 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=13.46;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:854,99,0 chrXI 329896 . A C 812 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=59;Dels=0.00;FS=6.767;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;MQRankSum=-0.760;QD=13.76;ReadPosRankSum=1.672;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:1,56:59:99:845,99,0 chrXI 329897 . T C 826 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;MQRankSum=-1.732;QD=13.77;ReadPosRankSum=1.617;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:859,102,0 chrXI 329949 . T A 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-1.601;QD=14.77;ReadPosRankSum=1.601;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1200,132,0 chrXI 329955 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=16.53;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1554,168,0 chrXI 330549 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2370,267,0 chrXI 330610 . C A 2451 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.95;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2484,267,0 chrXI 330692 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.2758;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.37;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1871,207,0 chrXI 331291 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.97;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2502,276,0 chrXI 331388 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=93;Dels=0.00;FS=10.390;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=0.703;QD=21.62;ReadPosRankSum=2.924;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,89:93:99:2044,240,0 chrXI 331675 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=145;Dels=0.00;FS=3.040;HaplotypeScore=11.0324;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.060;QD=22.71;ReadPosRankSum=2.381;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3293,375,0 chrXI 331936 . A G 2710 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2743,312,0 chrXI 332298 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.46;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2144,234,0 chrXI 332454 . A G 2786 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.02;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2819,312,0 chrXI 332476 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.86;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2443,267,0 chrXI 332860 . A C 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.257;QD=20.36;ReadPosRankSum=1.568;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3046,342,0 chrXI 332863 . A C 3063 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.84;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3096,345,0 chrXI 333057 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=23.87;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3040,324,0 chrXI 333073 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=19.24;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2611,291,0 chrXI 333079 . A G 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=5.1288;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=0.436;QD=19.33;ReadPosRankSum=1.706;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2565,285,0 chrXI 333397 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.49;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2993,333,0 chrXI 333556 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=170;Dels=0.00;FS=3.014;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.166;QD=23.27;ReadPosRankSum=2.406;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3956,444,0 chrXI 333577 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.92;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3323,372,0 chrXI 333609 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.23;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3980,444,0 chrXI 333757 . A G 4963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=201;Dels=0.00;FS=9.563;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.615;QD=24.69;ReadPosRankSum=2.935;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4963,549,0 chrXI 334135 . C A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1489;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.49;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3688,408,0 chrXI 334655 . A G 9628.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=416;Dels=0.00;FS=4.201;HaplotypeScore=23.8986;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.556;QD=23.14;ReadPosRankSum=1.707;SB=-3.938e+03 GT:AD:DP:GQ:PL 1/1:1,412:416:99:9628,1095,0 chrXI 334735 . C T 5849.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.91;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:5849,657,0 chrXI 334962 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.783;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.662;QD=23.63;ReadPosRankSum=3.783;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:5,134:139:99:3284,366,0 chrXI 334980 . T C 2588 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=23.11;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2621,291,0 chrXI 334995 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=22.88;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1795,201,0 chrXI 335009 . A G 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.497;QD=21.54;ReadPosRankSum=2.376;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1476,165,0 chrXI 335143 . C G 65.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=4.37;SB=-7.351e+01 GT:AD:DP:GQ:PL 1/1:0,14:15:12:98,12,0 chrXI 335312 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.33;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1676,189,0 chrXI 335314 . T A 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.224;QD=19.12;ReadPosRankSum=1.691;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1658,158,0 chrXI 335340 . C G 1910 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.90;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1943,222,0 chrXI 335383 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.41;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2453,273,0 chrXI 335408 . T G 2630 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.74;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2663,306,0 chrXI 335429 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.69;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2533,276,0 chrXI 335465 . G C 2711 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.79;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2744,309,0 chrXI 335606 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=168;Dels=0.00;FS=6.099;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.416;QD=21.88;ReadPosRankSum=2.934;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3676,414,0 chrXI 335708 . C G 4415.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.92;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4415,504,0 chrXI 336012 . C T 3554.01 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=21.41;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3554,390,0 chrXI 336013 . C G 3345.01 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.03;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3345,387,0 chrXI 336015 . C T 3491.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.54;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3491,390,0 chrXI 336059 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.030;DP=176;Dels=0.00;FS=14.681;HaplotypeScore=12.0644;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.267;QD=18.71;ReadPosRankSum=3.940;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:6,169:176:99:3293,375,0 chrXI 336133 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.93;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3781,408,0 chrXI 336232 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.68;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3379,369,0 chrXI 336457 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.40;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1937,219,0 chrXI 336540 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.99;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2694,291,0 chrXI 336698 . G A 5751.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.45;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5751,616,0 chrXI 337206 . A G 6820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.371;DP=309;Dels=0.00;FS=23.172;HaplotypeScore=27.2472;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.792;QD=22.07;ReadPosRankSum=4.485;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:8,296:309:99:6820,780,0 chrXI 337365 . T G 9107.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=403;Dels=0.00;FS=6.045;HaplotypeScore=12.9910;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-1.461;QD=22.60;ReadPosRankSum=2.908;SB=-4.983e+03 GT:AD:DP:GQ:PL 1/1:3,399:403:99:9107,1023,0 chrXI 337387 . T A 8453.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=22.78;SB=-4.667e+03 GT:AD:DP:GQ:PL 1/1:0,371:371:99:8453,916,0 chrXI 337473 . C T 5358.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=15.0289;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=18.93;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:5358,579,0 chrXI 337504 . G A 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.743;DP=225;Dels=0.00;FS=22.655;HaplotypeScore=385.3433;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;MQRankSum=-2.408;QD=7.46;ReadPosRankSum=2.308;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:10,215:225:99:1711,198,0 chrXI 337540 . G T 214.01 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;QD=1.60;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:27:247,27,0 chrXI 337543 . T A 213.45 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.676;DP=129;Dels=0.00;FS=2.617;HaplotypeScore=2.9571;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;MQRankSum=-3.616;QD=1.65;ReadPosRankSum=-0.307;SB=1.55 GT:AD:DP:GQ:PL 1/1:115,14:129:7:245,7,0 chrXI 337545 . C T 289 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5912;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;QD=2.33;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:36:322,36,0 chrXI 337549 . G T 260.33 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.181;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5655;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;MQRankSum=0.131;QD=1.97;ReadPosRankSum=0.210;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:14:293,14,0 chrXI 337554 . C T 261 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8188;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=2.06;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:36:294,36,0 chrXI 337555 . T A 261.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.5703;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;MQRankSum=-4.392;QD=2.14;ReadPosRankSum=9.004;SB=-2.042e+02 GT:AD:DP:GQ:PL 1/1:73,49:122:17:294,17,0 chrXI 337558 . G T 333 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.351;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5787;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;MQRankSum=-5.299;QD=2.43;ReadPosRankSum=9.777;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:58,72:137:42:366,42,0 chrXI 337563 . C T 647 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6448;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=6.67;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:72:680,72,0 chrXI 337572 . C T 845 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=6.7823;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;QD=6.93;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:96:878,96,0 chrXI 337576 . G T 877 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.7823;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=6.45;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:910,102,0 chrXI 337581 . C T 1050 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=6.77;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1083,120,0 chrXI 337585 . G T 1056 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=139.6461;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;MQRankSum=-0.261;QD=5.90;ReadPosRankSum=1.345;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:1089,120,0 chrXI 337772 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.8789;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=19.06;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3507,396,0 chrXI 337829 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.72;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4257,465,0 chrXI 337857 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.752;QD=20.87;ReadPosRankSum=1.662;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4194,468,0 chrXI 337917 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.09;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3859,417,0 chrXI 337995 . C T 4813.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.36;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4813,519,0 chrXI 338056 . C T 4753.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.7271;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.77;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4753,516,0 chrXI 338328 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1624;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.792;QD=18.53;ReadPosRankSum=1.645;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3688,426,0 chrXI 338559 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2240,246,0 chrXI 338730 . A T 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.018;QD=21.95;ReadPosRankSum=1.659;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2118,237,0 chrXI 338893 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=17.21;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1771,195,0 chrXI 339113 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=3.358;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=0.888;QD=22.77;ReadPosRankSum=1.688;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3552,405,0 chrXI 339180 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=19.4293;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.13;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3359,369,0 chrXI 339266 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.75;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3480,378,0 chrXI 339536 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=20.40;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1889,210,0 chrXI 340007 . T C 5050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=231;Dels=0.00;FS=2.734;HaplotypeScore=16.2969;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.281;QD=21.86;ReadPosRankSum=2.418;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:5050,567,0 chrXI 340064 . A G 5383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=270;Dels=0.00;FS=3.026;HaplotypeScore=14.4309;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.039;QD=19.94;ReadPosRankSum=1.287;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:2,266:270:99:5383,597,0 chrXI 340155 . T G 4725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.7853;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.425;QD=23.28;ReadPosRankSum=1.715;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4725,528,0 chrXI 340231 . G C 5125.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=5.8344;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.17;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:5125,576,0 chrXI 340235 . A G 4993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=279;Dels=0.00;FS=5.884;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.054;QD=17.90;ReadPosRankSum=2.967;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:3,274:279:99:4993,564,0 chrXI 340285 . G C 4296.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=20.7408;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.18;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4296,498,0 chrXI 340451 . A G 4869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.2293;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.106;QD=22.54;ReadPosRankSum=1.716;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:4869,546,0 chrXI 340626 . A T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.5263;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.82;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3727,408,0 chrXI 340714 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.91;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3465,387,0 chrXI 340743 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=180;Dels=0.00;FS=2.757;HaplotypeScore=9.6433;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-1.331;QD=19.95;ReadPosRankSum=2.395;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3591,408,0 chrXI 340770 . T A 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=0.393;QD=16.82;ReadPosRankSum=1.699;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:3499,402,0 chrXI 340783 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.9893;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=17.64;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3423,375,0 chrXI 340811 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.611;QD=17.67;ReadPosRankSum=1.663;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:3570,402,0 chrXI 341198 . C G 1634 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.01;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1667,195,0 chrXI 341302 . A C 2595 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.25;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2628,300,0 chrXI 341413 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.3485;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.12;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2638,291,0 chrXI 341641 . G A 4766.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.5217;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.19;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4766,516,0 chrXI 341753 . A T 5150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=234;Dels=0.00;FS=4.398;HaplotypeScore=7.2724;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.799;QD=22.01;ReadPosRankSum=-0.725;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5150,561,0 chrXI 341772 . C T 5118.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.78;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5118,555,0 chrXI 342080 . A G 3201 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.508;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;MQRankSum=-1.247;QD=20.39;ReadPosRankSum=1.666;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3234,378,0 chrXI 342082 . T C 3308.01 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=21.34;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3308,381,0 chrXI 342088 . A T 3367.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=159;Dels=0.00;FS=10.795;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-1.551;QD=21.18;ReadPosRankSum=2.905;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3367,366,0 chrXI 342298 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=19.65;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2647,303,0 chrXI 342308 . G C 2659 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=19.70;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2692,309,0 chrXI 342529 . C T 1729 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.36;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1762,186,0 chrXI 342621 . C T 853 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:93:886,93,0 chrXI 342813 . A G 1092 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1125,126,0 chrXI 342972 . A G 1381 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1414,168,0 chrXI 343032 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2700,294,0 chrXI 343477 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.0969;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.25;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3088,336,0 chrXI 343519 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.33;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3309,372,0 chrXI 343772 . C T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.00;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3795,423,0 chrXI 343793 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.93;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3837,426,0 chrXI 343926 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=3.307;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=0.400;QD=18.52;ReadPosRankSum=1.637;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:3427,381,0 chrXI 343932 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.88;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3361,369,0 chrXI 343968 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.09;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3284,366,0 chrXI 343977 . T A 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.631;QD=19.09;ReadPosRankSum=1.652;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3302,360,0 chrXI 344089 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.89;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3614,402,0 chrXI 344106 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.0037;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.50;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3341,375,0 chrXI 344140 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.09;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3881,429,0 chrXI 344217 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.97;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3867,423,0 chrXI 344242 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=18.80;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3153,342,0 chrXI 344249 . C A 2722 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.03;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:2755,300,0 chrXI 344412 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.437;DP=168;Dels=0.00;FS=5.514;HaplotypeScore=25.8618;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.012;QD=17.80;ReadPosRankSum=2.934;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:3,163:168:99:3024,339,0 chrXI 344465 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=195;Dels=0.00;FS=5.250;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=-0.448;QD=19.56;ReadPosRankSum=3.406;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:4,189:195:99:3815,432,0 chrXI 344474 . G T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=21.62;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4238,453,0 chrXI 344684 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=19.26;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3312,354,0 chrXI 344692 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=17.34;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:2980,330,0 chrXI 344705 . G C 2794 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.35;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2827,324,0 chrXI 345576 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4262,453,0 chrXI 345623 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=177;Dels=0.00;FS=6.770;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.928;QD=21.36;ReadPosRankSum=2.394;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3780,432,0 chrXI 346598 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=221;Dels=0.00;FS=3.747;HaplotypeScore=19.7789;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.159;QD=20.79;ReadPosRankSum=1.653;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,217:221:99:4595,510,0 chrXI 346911 . A G 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.680;QD=23.15;ReadPosRankSum=1.627;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,65:68:99:1607,183,0 chrXI 346941 . A G 1488 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.89;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1521,174,0 chrXI 347012 . C A 1520 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1553,171,0 chrXI 347287 . T G 3167 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.78;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3200,366,0 chrXI 347376 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4171,486,0 chrXI 348332 . C G 2496 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.1628;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.33;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2529,285,0 chrXI 348351 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.84;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2660,294,0 chrXI 348497 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.63;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3349,369,0 chrXI 348702 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.31;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3341,375,0 chrXI 348711 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.89;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3676,402,0 chrXI 348777 . T C 3175 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.45;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3208,372,0 chrXI 348933 . A G 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=188;Dels=0.00;FS=6.331;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.103;QD=21.30;ReadPosRankSum=2.397;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4005,447,0 chrXI 348953 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.23;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3630,414,0 chrXI 349155 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.98;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3802,444,0 chrXI 349224 . G C 43.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DP=161;Dels=0.00;FS=27.345;HaplotypeScore=139.4674;MLEAC=1;MLEAF=0.500;MQ=51.08;MQ0=0;MQRankSum=-2.442;QD=0.27;ReadPosRankSum=-5.499;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:145,13:161:10:73,0,10 chrXI 349286 . A G 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.224;QD=20.53;ReadPosRankSum=1.709;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3072,348,0 chrXI 349395 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=3.066;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-1.421;QD=20.26;ReadPosRankSum=1.710;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3194,360,0 chrXI 349404 . T C 2770 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.9092;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=19.24;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2803,321,0 chrXI 349433 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=3.253;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-1.329;QD=18.72;ReadPosRankSum=1.652;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2467,276,0 chrXI 349453 . T C 2482 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.52;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2515,279,0 chrXI 349504 . A G 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.490;QD=22.06;ReadPosRankSum=1.705;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2879,330,0 chrXI 349628 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.44;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4032,435,0 chrXI 349723 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=172;Dels=0.00;FS=4.030;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.692;QD=21.70;ReadPosRankSum=1.672;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3733,426,0 chrXI 349875 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.2813;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.64;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4137,439,0 chrXI 349940 . T G 4452.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.56;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4452,510,0 chrXI 350196 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.29;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3343,363,0 chrXI 350267 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.14;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4152,462,0 chrXI 350428 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.670;QD=23.43;ReadPosRankSum=1.631;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3267,375,0 chrXI 350464 . A T 3013 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.91;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3046,321,0 chrXI 350473 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=128;Dels=0.00;FS=2.594;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.759;QD=20.54;ReadPosRankSum=2.334;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2662,297,0 chrXI 350485 . T C 2728 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9252;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.91;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2761,312,0 chrXI 350566 . A C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.805;QD=19.99;ReadPosRankSum=1.678;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2592,303,0 chrXI 350578 . T C 2298 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.64;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2331,267,0 chrXI 350701 . T G 2792 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.07;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2825,312,0 chrXI 350852 . T C 2201 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.93;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2234,249,0 chrXI 350945 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.97;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1983,222,0 chrXI 351078 . T A 532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.774;DP=36;Dels=0.00;FS=9.420;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.458;QD=14.78;ReadPosRankSum=2.518;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:3,33:36:63:565,63,0 chrXI 351160 . A T 1600 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.33;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1633,177,0 chrXI 351226 . T C 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.043;DP=87;Dels=0.00;FS=2.300;HaplotypeScore=12.4261;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.093;QD=17.82;ReadPosRankSum=1.653;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:6,81:87:99:1583,186,0 chrXI 351268 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.79;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3330,375,0 chrXI 351348 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=166;Dels=0.00;FS=2.406;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.640;QD=22.66;ReadPosRankSum=2.909;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3762,420,0 chrXI 351443 . C A 5955.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.82;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5955,663,0 chrXI 351518 . A G 5194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.625;DP=258;Dels=0.00;FS=15.568;HaplotypeScore=19.8885;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.047;QD=20.13;ReadPosRankSum=3.801;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:5,253:258:99:5194,603,0 chrXI 351752 . A G 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;DP=241;Dels=0.00;FS=6.030;HaplotypeScore=17.9575;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.565;QD=20.96;ReadPosRankSum=2.903;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:3,235:241:99:5052,591,0 chrXI 351989 . T C 5105.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.9692;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.50;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5105,564,0 chrXI 352346 . T A 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=8.2823;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.208;QD=22.43;ReadPosRankSum=2.300;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3319,369,0 chrXI 352373 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.22;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3378,378,0 chrXI 352793 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.43;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2938,327,0 chrXI 352843 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.99;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2584,291,0 chrXI 353048 . T G 3209 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=23.42;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3242,360,0 chrXI 353066 . A G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.043;DP=158;Dels=0.00;FS=7.051;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.117;QD=20.22;ReadPosRankSum=2.418;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3228,369,0 chrXI 353167 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.16;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3025,333,0 chrXI 353200 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=18.22;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2548,270,0 chrXI 353207 . T A 2385 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=17.16;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2418,261,0 chrXI 353522 . C G 3330.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.50;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3330,387,0 chrXI 353672 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=152;Dels=0.00;FS=5.962;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.225;QD=20.93;ReadPosRankSum=2.874;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3215,372,0 chrXI 353705 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.53;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2714,297,0 chrXI 353786 . G C 2739 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.99;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2772,318,0 chrXI 354035 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.93;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3263,351,0 chrXI 354308 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.98;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4316,492,0 chrXI 355025 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.257;QD=20.34;ReadPosRankSum=1.711;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3315,372,0 chrXI 355029 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.262;QD=18.33;ReadPosRankSum=1.711;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3076,348,0 chrXI 355110 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.07;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2350,261,0 chrXI 355187 . A G 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;DP=109;Dels=0.00;FS=7.338;HaplotypeScore=84.6521;MLEAC=1;MLEAF=0.500;MQ=54.26;MQ0=0;MQRankSum=1.602;QD=0.95;ReadPosRankSum=-4.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,28:109:99:133,0,704 chrXI 355411 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=17.74;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2375,267,0 chrXI 355412 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.6878;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=18.12;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2443,276,0 chrXI 355474 . T C 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.111;QD=19.67;ReadPosRankSum=1.710;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3102,348,0 chrXI 355535 . C G 1886 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=20.06;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1919,216,0 chrXI 355543 . A G 1758 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=20.93;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1791,207,0 chrXI 355603 . G A 2207.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;DP=190;Dels=0.00;FS=132.689;HaplotypeScore=10.9321;MLEAC=1;MLEAF=0.500;MQ=45.34;MQ0=0;MQRankSum=-1.229;QD=11.62;ReadPosRankSum=-1.254;SB=-5.110e+02 GT:AD:DP:GQ:PL 0/1:66,122:190:99:2237,0,501 chrXI 355610 . T G 2193.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.236;DP=203;Dels=0.00;FS=111.587;HaplotypeScore=14.4751;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=0;MQRankSum=-3.271;QD=10.80;ReadPosRankSum=0.347;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:76,126:203:99:2223,0,530 chrXI 355649 . G A 4527.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=21.35;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4527,489,0 chrXI 355654 . G C 4069.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.9566;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.38;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:4069,465,0 chrXI 355728 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=182;Dels=0.00;FS=6.045;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=0.682;QD=19.23;ReadPosRankSum=2.396;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3499,396,0 chrXI 355745 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=19.32;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3085,354,0 chrXI 355752 . C G 3138 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=18.14;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3171,357,0 chrXI 355780 . A G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.113;DP=187;Dels=0.00;FS=72.986;HaplotypeScore=10.1322;MLEAC=1;MLEAF=0.500;MQ=45.92;MQ0=0;MQRankSum=-5.463;QD=0.19;ReadPosRankSum=-7.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,31:187:66:66,0,2640 chrXI 355841 . C A 4181.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1615;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.03;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4181,444,0 chrXI 355897 . A C 3352.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.02;FS=0.000;HaplotypeScore=17.8761;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.63;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3352,384,0 chrXI 356064 . G C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.22;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3275,375,0 chrXI 356125 . T G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=5.714;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-0.155;QD=18.32;ReadPosRankSum=1.676;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2286,258,0 chrXI 356171 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=13.39;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1412,156,0 chrXI 356178 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=13.10;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1461,168,0 chrXI 356199 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=17.49;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2009,225,0 chrXI 356276 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.01;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2102,231,0 chrXI 356315 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8740;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.92;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1623,180,0 chrXI 356343 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=8.278;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-0.945;QD=22.87;ReadPosRankSum=2.386;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1794,198,0 chrXI 356360 . G C 1804 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=20.98;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1837,204,0 chrXI 356395 . T C 2053 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.93;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2086,246,0 chrXI 356832 . G A 5295.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.96;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5295,594,0 chrXI 356876 . A G 6104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=270;Dels=0.00;FS=5.664;HaplotypeScore=19.8525;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.148;QD=22.61;ReadPosRankSum=1.693;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:6104,725,0 chrXI 357380 . T C 7880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=350;Dels=0.00;FS=5.163;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.279;QD=22.51;ReadPosRankSum=1.682;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:1,347:350:99:7880,888,0 chrXI 357892 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.42;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2724,291,0 chrXI 357937 . G C 2101 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.82;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2134,255,0 chrXI 358089 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.75;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1932,201,0 chrXI 358323 . T A 1568 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.40;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1601,177,0 chrXI 358714 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.98;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3470,381,0 chrXI 358834 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.51;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2408,258,0 chrXI 358916 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.57;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3252,369,0 chrXI 358973 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.08;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2803,315,0 chrXI 359142 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=152;Dels=0.00;FS=3.035;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.751;QD=19.89;ReadPosRankSum=2.417;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,147:152:99:3057,357,0 chrXI 359254 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.22;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3669,420,0 chrXI 359596 . G A 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.5272;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.217;QD=23.49;ReadPosRankSum=1.696;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2312,255,0 chrXI 359850 . T C 2418 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=2.9398;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.48;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2451,273,0 chrXI 359854 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.73;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2336,258,0 chrXI 359874 . A G 1967 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.49;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2000,228,0 chrXI 360019 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.75;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2900,315,0 chrXI 360238 . G C 3066 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.71;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3099,351,0 chrXI 360304 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.6808;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.89;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3410,372,0 chrXI 360538 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.765;QD=23.32;ReadPosRankSum=1.687;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3592,402,0 chrXI 360730 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=9.2341;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.74;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2446,264,0 chrXI 360927 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.98;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2362,255,0 chrXI 360932 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.88;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2419,258,0 chrXI 360940 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.91;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2397,261,0 chrXI 361043 . T C 2417 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.98;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2450,279,0 chrXI 361052 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.58;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2709,291,0 chrXI 361298 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.5080;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.04;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3571,402,0 chrXI 361385 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.0217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3650,408,0 chrXI 361475 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.066;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.133;QD=19.52;ReadPosRankSum=1.621;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3136,351,0 chrXI 361482 . T C 3098 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.38;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3131,351,0 chrXI 361682 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.72;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2552,276,0 chrXI 361703 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.41;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2610,285,0 chrXI 361798 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.17;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1567,177,0 chrXI 361800 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.00;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1572,174,0 chrXI 361878 . A C 2556 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.03;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2589,288,0 chrXI 361983 . G T 3074 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=20.63;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3107,348,0 chrXI 362017 . A C 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=11.269;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=-2.126;QD=23.11;ReadPosRankSum=2.361;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:2,165:170:99:3928,435,0 chrXI 362101 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5115;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=20.61;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3124,357,0 chrXI 362114 . T C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;MQRankSum=-1.188;QD=18.36;ReadPosRankSum=2.417;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:2842,315,0 chrXI 362157 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=205;Dels=0.00;FS=5.277;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;MQRankSum=0.897;QD=16.18;ReadPosRankSum=2.946;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:3316,378,0 chrXI 362170 . G T 3159 SnpCluster AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=16.12;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3192,354,0 chrXI 362171 . A G 3090 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=3.815;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;MQRankSum=-1.554;QD=15.77;ReadPosRankSum=1.714;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3123,351,0 chrXI 362173 . A G 3093 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=15.46;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3126,363,0 chrXI 362231 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=18.51;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4147,474,0 chrXI 362247 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=20.89;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4366,486,0 chrXI 362299 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5594;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=20.63;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3652,408,0 chrXI 362315 . T G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=4.675;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;MQRankSum=-1.384;QD=20.52;ReadPosRankSum=1.693;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3694,420,0 chrXI 362322 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=2.572;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=-0.262;QD=21.07;ReadPosRankSum=2.423;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3898,438,0 chrXI 362591 . A T 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=5.068;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.948;QD=24.31;ReadPosRankSum=1.667;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2610,285,0 chrXI 362657 . A G 2478 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.31;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2511,285,0 chrXI 362665 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.76;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2503,282,0 chrXI 362705 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.77;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2774,303,0 chrXI 363248 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3782,423,0 chrXI 363372 . T C 3813.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.25;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3813,432,0 chrXI 363449 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.8910;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.33;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3455,408,0 chrXI 363812 . G C 5323.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.2145;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.45;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:5323,591,0 chrXI 363989 . C T 4973.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.05;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:4973,561,0 chrXI 364013 . C T 5212.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.36;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5212,564,0 chrXI 364133 . C T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.1225;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.84;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3757,414,0 chrXI 364194 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.39;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2146,240,0 chrXI 364367 . G A 203.01 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=8.46;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,22:24:27:236,27,0 chrXI 364384 . T C 537 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=16.27;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:63:570,63,0 chrXI 364488 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=34.7943;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.66;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:986,114,0 chrXI 364489 . G A 939 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=34.7943;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:44:99:972,105,0 chrXI 364596 . T A 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=1.376;QD=23.87;ReadPosRankSum=2.391;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3040,339,0 chrXI 364621 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.37;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2986,318,0 chrXI 364623 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.18;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2916,318,0 chrXI 364711 . A T 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.317;QD=21.37;ReadPosRankSum=1.610;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3067,348,0 chrXI 364951 . T G 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.490;QD=21.90;ReadPosRankSum=2.401;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4489,504,0 chrXI 364965 . A G 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=4.970;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.991;QD=21.35;ReadPosRankSum=1.715;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4313,474,0 chrXI 365167 . C A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.33;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3679,426,0 chrXI 365330 . A T 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=111;Dels=0.00;FS=2.947;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=0.033;QD=17.44;ReadPosRankSum=2.405;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1969,194,0 chrXI 365352 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=15.08;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1466,165,0 chrXI 365364 . A C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=-1.148;QD=13.18;ReadPosRankSum=1.693;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1206,141,0 chrXI 365376 . A G 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=4.309;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;MQRankSum=-1.070;QD=10.03;ReadPosRankSum=1.693;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:936,105,0 chrXI 365381 . A G 1081 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=12.15;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1114,126,0 chrXI 365453 . C G 2256 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=17.90;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2289,270,0 chrXI 365859 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3540,384,0 chrXI 365937 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.0065;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.71;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2768,312,0 chrXI 366156 . A G 2585 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.68;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2618,291,0 chrXI 366174 . G C 2292 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=18.19;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2325,264,0 chrXI 366213 . C T 2700 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.9561;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.57;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2733,303,0 chrXI 366486 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.737;DP=185;Dels=0.00;FS=7.827;HaplotypeScore=15.1414;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.281;QD=21.43;ReadPosRankSum=3.448;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:5,179:185:99:3964,453,0 chrXI 366579 . C T 4076.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.88;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4076,444,0 chrXI 366581 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.208;DP=229;Dels=0.00;FS=9.073;HaplotypeScore=3.9175;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.876;QD=16.15;ReadPosRankSum=3.392;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:4,224:229:99:3698,426,0 chrXI 366681 . A C 5115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=250;Dels=0.00;FS=14.397;HaplotypeScore=16.5018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.415;QD=20.46;ReadPosRankSum=3.391;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:4,246:250:99:5115,594,0 chrXI 366732 . A C 4187.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.7530;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=18.86;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4187,468,0 chrXI 366804 . T C 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=236;Dels=0.00;FS=4.235;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.394;QD=21.12;ReadPosRankSum=1.703;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:4984,582,0 chrXI 366840 . C T 5648.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.77;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5648,627,0 chrXI 366915 . C T 4103.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.92;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4103,456,0 chrXI 366957 . C T 3886.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.95;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3886,420,0 chrXI 366981 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.13;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4183,465,0 chrXI 367068 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=158;Dels=0.00;FS=3.037;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.547;QD=21.56;ReadPosRankSum=2.386;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,153:158:99:3406,393,0 chrXI 367128 . A T 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.131;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.161;QD=21.03;ReadPosRankSum=1.713;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3848,417,0 chrXI 367140 . G C 4075.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.78;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4075,456,0 chrXI 367251 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.62;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4180,477,0 chrXI 367303 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9425;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.33;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3840,429,0 chrXI 367407 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=172;Dels=0.00;FS=3.620;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.237;QD=22.41;ReadPosRankSum=1.691;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,167:172:99:3854,435,0 chrXI 367533 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.26;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2726,306,0 chrXI 367554 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.56;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2405,270,0 chrXI 367626 . T C 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=3.522;HaplotypeScore=9.7522;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.508;QD=20.10;ReadPosRankSum=1.700;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2204,258,0 chrXI 367701 . A G 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.612;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.761;QD=23.08;ReadPosRankSum=1.635;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2526,294,0 chrXI 367753 . A G 1898 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.63;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1931,219,0 chrXI 367768 . C G 1817 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.33;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1850,204,0 chrXI 367788 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.32;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1600,183,0 chrXI 367790 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=17.47;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1710,183,0 chrXI 367833 . A T 2193 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.89;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2226,240,0 chrXI 367926 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.0936;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.58;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2914,321,0 chrXI 367941 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.08;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2921,324,0 chrXI 368071 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.84;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3767,405,0 chrXI 368145 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.51;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3738,408,0 chrXI 368193 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=174;Dels=0.00;FS=6.034;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.046;QD=21.18;ReadPosRankSum=2.913;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3685,420,0 chrXI 368205 . G C 3368.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.81;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3368,396,0 chrXI 368244 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.41;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2978,324,0 chrXI 368278 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.47;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3392,384,0 chrXI 368313 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=167;Dels=0.00;FS=6.076;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.404;QD=22.62;ReadPosRankSum=2.910;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3778,420,0 chrXI 369378 . G A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3917,420,0 chrXI 369689 . A T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=17.6894;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.57;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3305,363,0 chrXI 369878 . C T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1812;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.18;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4450,477,0 chrXI 370412 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=190;Dels=0.00;FS=7.720;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.527;QD=21.75;ReadPosRankSum=2.398;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4132,462,0 chrXI 370529 . A T 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9273;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.138;QD=21.93;ReadPosRankSum=1.668;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3597,384,0 chrXI 370565 . A C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.229;QD=21.56;ReadPosRankSum=1.712;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3730,420,0 chrXI 370652 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=3.178;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.614;QD=22.97;ReadPosRankSum=1.688;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3652,414,0 chrXI 370874 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.599;QD=22.74;ReadPosRankSum=1.689;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3616,417,0 chrXI 371456 . A T 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=67.9803;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.577;QD=14.59;ReadPosRankSum=1.191;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1448,165,0 chrXI 371565 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.28;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1554,177,0 chrXI 371603 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.41;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2352,264,0 chrXI 371762 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.282;QD=23.27;ReadPosRankSum=1.620;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3607,414,0 chrXI 371802 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.9895;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.32;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3645,396,0 chrXI 371814 . A C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=3.941;HaplotypeScore=6.4948;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.800;QD=20.49;ReadPosRankSum=1.692;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3524,405,0 chrXI 372140 . T G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.936;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.746;QD=17.74;ReadPosRankSum=1.686;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2730,306,0 chrXI 372141 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.94;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2855,309,0 chrXI 372239 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.53;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3165,351,0 chrXI 372308 . T A 2480 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.84;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2513,279,0 chrXI 372443 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.19;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2300,255,0 chrXI 372458 . A G 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.600;QD=21.49;ReadPosRankSum=1.632;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2268,258,0 chrXI 372830 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.16;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3203,351,0 chrXI 373379 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3745,426,0 chrXI 374056 . A G 4498.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.05;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4498,501,0 chrXI 374207 . C A 3152 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.20;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3185,354,0 chrXI 374290 . A T 2397 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.18;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2430,270,0 chrXI 374291 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.39;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2332,264,0 chrXI 374407 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.03;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2866,306,0 chrXI 374411 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.74;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3000,315,0 chrXI 375324 . T C 2416 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.58;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2449,270,0 chrXI 375794 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=3.035;HaplotypeScore=11.4341;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.268;QD=21.02;ReadPosRankSum=2.410;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2660,303,0 chrXI 376307 . A T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.95;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3718,405,0 chrXI 376508 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.942;QD=23.49;ReadPosRankSum=1.692;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4041,456,0 chrXI 376620 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3276,357,0 chrXI 376721 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.140;QD=22.40;ReadPosRankSum=1.711;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3628,423,0 chrXI 376929 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.43;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3679,420,0 chrXI 376943 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.54;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3339,372,0 chrXI 376988 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.87;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3587,405,0 chrXI 377273 . T A 4686.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.79;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4686,531,0 chrXI 377373 . A G 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.353;QD=21.76;ReadPosRankSum=1.683;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4592,507,0 chrXI 377390 . G A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.94;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4377,492,0 chrXI 377792 . G C 3451.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.97;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3451,387,0 chrXI 377843 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2956,321,0 chrXI 377954 . A C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=183;Dels=0.00;FS=2.877;HaplotypeScore=7.9999;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.188;QD=21.96;ReadPosRankSum=2.396;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4019,471,0 chrXI 378170 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.0631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2874,312,0 chrXI 378422 . A G 2080 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2113,240,0 chrXI 378458 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.053;QD=22.15;ReadPosRankSum=1.630;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2314,258,0 chrXI 378519 . T G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.146;QD=24.33;ReadPosRankSum=1.705;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3196,354,0 chrXI 378612 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2552,282,0 chrXI 378664 . A T 2984 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.46;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3017,330,0 chrXI 378856 . T C 1866 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.95;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1899,210,0 chrXI 378899 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=19.80;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1201,132,0 chrXI 378901 . T G 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-0.762;QD=18.10;ReadPosRankSum=2.368;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1119,113,0 chrXI 378920 . A G 1099 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=20.35;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1132,126,0 chrXI 378962 . T C 231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=0.047;QD=6.24;ReadPosRankSum=1.639;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:30:264,30,0 chrXI 379149 . G A 1139 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;QD=12.80;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1172,132,0 chrXI 379176 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=9.9692;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=11.75;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1279,144,0 chrXI 379202 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=12.20;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1522,165,0 chrXI 379205 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=11.86;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1492,162,0 chrXI 379215 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=11.60;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1402,165,0 chrXI 379283 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=19.14;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2425,264,0 chrXI 379287 . C G 2229 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=17.55;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2262,264,0 chrXI 379301 . A G 2483 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=18.67;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2516,285,0 chrXI 379423 . A G 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=3.063;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;MQRankSum=-0.689;QD=22.75;ReadPosRankSum=1.711;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3799,423,0 chrXI 379434 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=21.93;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3553,405,0 chrXI 379495 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=23.39;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3579,396,0 chrXI 379560 . T C 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.608;HaplotypeScore=10.8743;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.718;QD=21.64;ReadPosRankSum=1.707;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3062,342,0 chrXI 379628 . T A 2887 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;QD=18.16;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2920,324,0 chrXI 379647 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=16.99;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2700,288,0 chrXI 379650 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=17.29;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2748,297,0 chrXI 379670 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=15.09;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2251,255,0 chrXI 379784 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=16.80;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1293,150,0 chrXI 379829 . G C 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.109;DP=90;Dels=0.00;FS=5.127;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-0.205;QD=20.49;ReadPosRankSum=-1.437;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1877,172,0 chrXI 379888 . A C 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=0.293;QD=21.39;ReadPosRankSum=2.327;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1744,198,0 chrXI 380602 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3185,348,0 chrXI 381019 . C A 8467.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=20.5395;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.20;SB=-3.879e+03 GT:AD:DP:GQ:PL 1/1:0,363:365:99:8467,922,0 chrXI 381058 . G A 8214.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=22.4103;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.90;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,373:375:99:8214,912,0 chrXI 381640 . T C 7627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=337;Dels=0.00;FS=9.103;HaplotypeScore=19.1626;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.799;QD=22.63;ReadPosRankSum=3.400;SB=-4.223e+03 GT:AD:DP:GQ:PL 1/1:4,333:337:99:7627,855,0 chrXI 381664 . C T 8361.01 filter AC=2;AF=1.00;AN=2;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=11.0583;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.12;SB=-4.881e+03 GT:AD:DP:GQ:PL 1/1:0,376:378:99:8361,913,0 chrXI 381721 . A G 6626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=332;Dels=0.00;FS=8.854;HaplotypeScore=33.6462;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.569;QD=19.96;ReadPosRankSum=3.383;SB=-3.825e+03 GT:AD:DP:GQ:PL 1/1:4,327:332:99:6626,756,0 chrXI 382357 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.7742;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=16.36;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2225,246,0 chrXI 382980 . C G 6925.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=20.9378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,297:299:99:6925,789,0 chrXI 383052 . G A 7046.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=12.9396;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.03;SB=-3.797e+03 GT:AD:DP:GQ:PL 1/1:0,304:306:99:7046,789,0 chrXI 383133 . A G 7744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=349;Dels=0.00;FS=9.727;HaplotypeScore=21.7437;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.147;QD=22.19;ReadPosRankSum=2.968;SB=-4.246e+03 GT:AD:DP:GQ:PL 1/1:3,344:349:99:7744,896,0 chrXI 383398 . C T 7409.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=26.6845;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.73;SB=-3.709e+03 GT:AD:DP:GQ:PL 1/1:0,340:341:99:7409,808,0 chrXI 383532 . A G 6076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=320;Dels=0.00;FS=9.011;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.411;QD=18.99;ReadPosRankSum=3.364;SB=-3.783e+03 GT:AD:DP:GQ:PL 1/1:4,316:320:99:6076,711,0 chrXI 383538 . A G 5819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=300;Dels=0.00;FS=6.036;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.883;QD=19.40;ReadPosRankSum=2.883;SB=-3.788e+03 GT:AD:DP:GQ:PL 1/1:3,297:300:99:5819,654,0 chrXI 383706 . T C 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=256;Dels=0.00;FS=7.796;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.239;QD=20.33;ReadPosRankSum=2.430;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:2,250:256:99:5204,588,0 chrXI 383913 . G A 7457.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=24.5266;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.30;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,319:320:99:7457,831,0 chrXI 384000 . A G 6298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=305;Dels=0.00;FS=7.162;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.251;QD=20.65;ReadPosRankSum=1.999;SB=-3.297e+03 GT:AD:DP:GQ:PL 1/1:2,303:305:99:6298,705,0 chrXI 384068 . A G 6155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=336;Dels=0.00;FS=2.685;HaplotypeScore=26.4473;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.238;QD=18.32;ReadPosRankSum=2.413;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:2,333:336:99:6155,714,0 chrXI 384196 . C T 5471.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.9303;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.80;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,234:240:99:5471,597,0 chrXI 384228 . C T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.06;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,183:188:99:4335,471,0 chrXI 384363 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=22.91;ReadPosRankSum=1.707;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3240,360,0 chrXI 384792 . A T 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.607;QD=21.20;ReadPosRankSum=1.707;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2958,330,0 chrXI 385127 . T C 306.45 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.812;DP=91;Dels=0.01;FS=46.154;HaplotypeScore=55.4140;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.555;QD=3.37;ReadPosRankSum=2.884;SB=-1.955e+02 GT:AD:DP:GQ:PL 1/1:16,65:90:7:338,7,0 chrXI 385133 . C T 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;DP=103;Dels=0.00;FS=77.949;HaplotypeScore=52.4933;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=0;MQRankSum=-2.699;QD=0.99;ReadPosRankSum=-4.191;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,32:103:99:132,0,597 chrXI 385424 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=154.9546;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=21.60;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3521,393,0 chrXI 385427 . T A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=152.4464;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.02;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3590,393,0 chrXI 385473 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=17.8718;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.60;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3593,384,0 chrXI 385536 . G C 2889 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.57;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2922,330,0 chrXI 385688 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.60;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3468,378,0 chrXI 385714 . A G 2861 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.84;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2894,333,0 chrXI 385769 . T A 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.174;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.526;QD=18.61;ReadPosRankSum=1.655;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2545,285,0 chrXI 385778 . T C 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=6.389;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-1.525;QD=18.62;ReadPosRankSum=2.413;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2509,285,0 chrXI 385811 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=17.64;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2749,300,0 chrXI 385829 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=17.16;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2795,303,0 chrXI 385892 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=169;Dels=0.00;FS=9.185;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.827;QD=22.01;ReadPosRankSum=2.346;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:4,164:169:99:3719,392,0 chrXI 386072 . C G 3442.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.26;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3442,390,0 chrXI 386153 . A C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=110;Dels=0.00;FS=2.979;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.414;QD=20.83;ReadPosRankSum=2.405;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2324,261,0 chrXI 386489 . T A 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=212;Dels=0.00;FS=2.829;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.562;QD=22.48;ReadPosRankSum=2.345;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4765,543,0 chrXI 386780 . A G 4955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=216;Dels=0.00;FS=3.051;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.449;QD=22.94;ReadPosRankSum=1.636;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4955,558,0 chrXI 386882 . A G 6416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=265;Dels=0.00;FS=3.477;HaplotypeScore=10.6383;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.425;QD=24.21;ReadPosRankSum=1.706;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:6416,717,0 chrXI 387224 . A T 153.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.114;DP=126;Dels=0.03;FS=2.307;HaplotypeScore=147.9531;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-0.468;QD=1.21;ReadPosRankSum=4.031;SB=-5.271e+02 GT:AD:DP:GQ:PL 1/1:6,116:122:21:186,21,0 chrXI 387240 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=16.11;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1902,207,0 chrXI 387382 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:716,75,0 chrXI 388314 . A C 5050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.845;QD=24.16;ReadPosRankSum=1.682;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:5050,576,0 chrXI 388501 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=161;Dels=0.00;FS=3.653;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.602;QD=22.22;ReadPosRankSum=1.645;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3578,402,0 chrXI 388737 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.713;QD=24.92;ReadPosRankSum=1.713;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4510,495,0 chrXI 389905 . T C 3016 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.50;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3049,342,0 chrXI 389917 . A G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=2.802;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-1.540;QD=17.69;ReadPosRankSum=2.419;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:2898,327,0 chrXI 389926 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=1.711;QD=17.94;ReadPosRankSum=1.647;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2958,333,0 chrXI 389996 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.58;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2852,312,0 chrXI 390146 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=24.13;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2929,330,0 chrXI 390203 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.18;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2765,318,0 chrXI 390357 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.9700;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.06;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2967,324,0 chrXI 390540 . C T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.1626;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.19;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4585,490,0 chrXI 390609 . C A 4307.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.6223;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.33;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4307,468,0 chrXI 390664 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.63;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3247,354,0 chrXI 390734 . T G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.33;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3538,399,0 chrXI 390738 . G T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.36;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3736,405,0 chrXI 390798 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.169;DP=176;Dels=0.00;FS=2.801;HaplotypeScore=12.9804;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.035;QD=19.88;ReadPosRankSum=0.246;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3498,399,0 chrXI 391146 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.52;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2291,240,0 chrXI 391161 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.19;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2119,231,0 chrXI 391848 . C T 4462.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.65;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4462,501,0 chrXI 391885 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DP=207;Dels=0.00;FS=2.564;HaplotypeScore=18.4988;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.296;QD=20.84;ReadPosRankSum=2.916;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:3,202:207:99:4314,486,0 chrXI 391941 . A G 7087.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=13.4541;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.86;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,305:310:99:7087,813,0 chrXI 392142 . A G 6857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=339;Dels=0.00;FS=2.567;HaplotypeScore=10.3663;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.453;QD=20.23;ReadPosRankSum=2.879;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:3,336:339:99:6857,771,0 chrXI 392315 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2334,255,0 chrXI 392532 . G T 2693 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=16.4847;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.42;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2726,300,0 chrXI 392586 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.08;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3562,396,0 chrXI 393129 . G A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.3573;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.02;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4520,510,0 chrXI 393245 . G A 5077.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.2620;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.67;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5077,567,0 chrXI 393359 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.96;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3375,375,0 chrXI 393589 . G C 3490.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.1994;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.37;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3490,393,0 chrXI 393707 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=2.967;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.402;QD=21.11;ReadPosRankSum=2.387;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3293,369,0 chrXI 393718 . A G 3144 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.53;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3177,354,0 chrXI 394215 . T C 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.289;QD=21.17;ReadPosRankSum=0.469;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4064,458,0 chrXI 394878 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9680;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.183;QD=23.35;ReadPosRankSum=1.712;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3969,444,0 chrXI 395025 . A C 2722 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.30;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2755,312,0 chrXI 395041 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.81;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3413,366,0 chrXI 395181 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.587;QD=22.01;ReadPosRankSum=1.691;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3698,417,0 chrXI 395260 . C A 3107 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=20.31;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3140,357,0 chrXI 395283 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=20.08;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3226,348,0 chrXI 395287 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=6.426;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=1.377;QD=19.09;ReadPosRankSum=2.375;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3183,357,0 chrXI 395302 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=179;Dels=0.00;FS=3.004;HaplotypeScore=8.9109;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=0.118;QD=17.94;ReadPosRankSum=2.422;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3244,378,0 chrXI 395389 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.58;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4127,453,0 chrXI 395440 . C T 5018.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=19.6398;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.01;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5018,558,0 chrXI 395566 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=166;Dels=0.00;FS=6.019;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=2.043;QD=20.68;ReadPosRankSum=2.958;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:3,162:166:99:3433,381,0 chrXI 395584 . G T 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4927;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.406;QD=20.51;ReadPosRankSum=0.535;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3343,369,0 chrXI 396283 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.19;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3350,381,0 chrXI 396469 . G T 5306.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.8245;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.11;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5306,594,0 chrXI 396726 . C G 6470.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.01;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:6470,714,0 chrXI 396790 . G C 7002.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.96;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,329:334:99:7002,824,0 chrXI 396831 . A G 7098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.169;DP=311;Dels=0.00;FS=8.321;HaplotypeScore=32.7509;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.788;QD=22.82;ReadPosRankSum=3.394;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:4,306:311:99:7098,789,0 chrXI 397099 . T G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.3914;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=1.121;QD=20.98;ReadPosRankSum=-0.484;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2928,330,0 chrXI 397137 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.95;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2458,276,0 chrXI 397150 . C G 2663 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.44;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2696,300,0 chrXI 397277 . T C 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=100;Dels=0.00;FS=6.797;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.455;QD=18.51;ReadPosRankSum=2.401;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1884,213,0 chrXI 397278 . T C 1768 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.68;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1801,201,0 chrXI 397823 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2908,327,0 chrXI 397947 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3302,357,0 chrXI 398547 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3708,414,0 chrXI 398874 . C G 2770 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2803,309,0 chrXI 398924 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.73;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2531,279,0 chrXI 399102 . T G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.160;DP=144;Dels=0.00;FS=2.839;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.040;QD=23.40;ReadPosRankSum=1.745;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3370,363,0 chrXI 399300 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3660,417,0 chrXI 399626 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.854;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.713;QD=23.66;ReadPosRankSum=1.691;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4023,456,0 chrXI 399800 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.91;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3372,366,0 chrXI 399858 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.24;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3416,387,0 chrXI 399930 . T C 2136 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.57;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2169,252,0 chrXI 399948 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=7.034;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.335;QD=18.80;ReadPosRankSum=2.363;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2176,246,0 chrXI 400014 . A T 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=143;Dels=0.00;FS=7.098;HaplotypeScore=9.2248;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.649;QD=21.28;ReadPosRankSum=2.380;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3076,342,0 chrXI 400068 . C T 4706.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.01;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4706,519,0 chrXI 400341 . C T 4947.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.42;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4947,549,0 chrXI 400521 . G A 5128.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.6721;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.20;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5128,576,0 chrXI 400972 . A G 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=210;Dels=0.00;FS=11.877;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.928;QD=23.01;ReadPosRankSum=2.890;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4832,540,0 chrXI 401736 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.642;QD=21.91;ReadPosRankSum=-0.214;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3593,368,0 chrXI 401769 . C G 2860 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.6723;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.33;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2893,330,0 chrXI 401790 . T C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.729;QD=17.71;ReadPosRankSum=1.709;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2743,312,0 chrXI 401850 . C T 5334.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.51;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5334,577,0 chrXI 401890 . C G 5484.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.59;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:5484,612,0 chrXI 401916 . C T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.12;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4978,555,0 chrXI 402660 . T C 5780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=251;Dels=0.00;FS=2.648;HaplotypeScore=19.6036;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.715;QD=23.03;ReadPosRankSum=2.410;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:2,247:251:99:5780,654,0 chrXI 402809 . G C 6362.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=18.3342;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.57;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6362,705,0 chrXI 403011 . G T 4982.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.3213;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.24;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4982,540,0 chrXI 403407 . G T 4878.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.0111;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.49;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4878,549,0 chrXI 403558 . G A 4318.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.17;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4318,486,0 chrXI 403561 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.66;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4194,477,0 chrXI 404302 . T C 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=202;Dels=0.00;FS=5.086;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.559;QD=20.77;ReadPosRankSum=1.715;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4195,477,0 chrXI 404344 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.90;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3741,420,0 chrXI 404440 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.2403;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.10;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3494,384,0 chrXI 404696 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.87;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2480,276,0 chrXI 404773 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.68;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2875,312,0 chrXI 404905 . C G 2970 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.50;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3003,348,0 chrXI 405007 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.710;QD=21.78;ReadPosRankSum=0.111;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3398,366,0 chrXI 405343 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.83;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2949,330,0 chrXI 405361 . A C 3063 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.12;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3096,354,0 chrXI 405405 . A T 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.315;QD=21.51;ReadPosRankSum=1.642;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3313,360,0 chrXI 405871 . C G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.4473;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.02;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3468,393,0 chrXI 406060 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.99;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3137,345,0 chrXI 406093 . A G 3124 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.40;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3157,348,0 chrXI 406357 . T C 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=89;Dels=0.00;FS=3.040;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.378;QD=21.39;ReadPosRankSum=2.282;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1937,219,0 chrXI 406489 . A G 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.178;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.811;QD=21.21;ReadPosRankSum=1.688;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1730,201,0 chrXI 407067 . A G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.82;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3903,432,0 chrXI 407229 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=138;Dels=0.00;FS=2.581;HaplotypeScore=18.4029;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.711;QD=20.22;ReadPosRankSum=2.919;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:3,133:138:99:2824,315,0 chrXI 407274 . A G 2540 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.99;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2573,291,0 chrXI 407314 . T C 2876 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.5430;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.95;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2909,327,0 chrXI 407572 . T C 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=194;Dels=0.00;FS=2.745;HaplotypeScore=7.4434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.505;QD=23.05;ReadPosRankSum=2.398;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4471,498,0 chrXI 407615 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4316,483,0 chrXI 407765 . G A 4836.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.6527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4836,534,0 chrXI 408523 . G A 5191.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.81;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5191,579,0 chrXI 408636 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.14;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4229,492,0 chrXI 408846 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=3.666;HaplotypeScore=13.2907;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.628;QD=21.43;ReadPosRankSum=1.682;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4479,525,0 chrXI 408904 . C T 5022.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.3353;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.69;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5022,540,0 chrXI 409333 . A G 2415 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.78;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2448,282,0 chrXI 409377 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.27;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1533,171,0 chrXI 409936 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.197;QD=22.23;ReadPosRankSum=3.391;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:4,127:132:99:2968,327,0 chrXI 409950 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.5868;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.29;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2864,324,0 chrXI 410208 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.34;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4267,471,0 chrXI 410220 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=3.350;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.782;QD=21.72;ReadPosRankSum=1.713;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4061,462,0 chrXI 410250 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.43;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3534,393,0 chrXI 410346 . A G 4402.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.59;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4402,489,0 chrXI 410472 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.39;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3957,447,0 chrXI 410677 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.555;QD=21.03;ReadPosRankSum=1.715;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4438,507,0 chrXI 410877 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4100,456,0 chrXI 410991 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.39;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3294,369,0 chrXI 410995 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.04;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2959,339,0 chrXI 411004 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.24;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2842,321,0 chrXI 411118 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.12;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4583,492,0 chrXI 411643 . A G 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=206;Dels=0.00;FS=5.357;HaplotypeScore=13.8538;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.598;QD=22.04;ReadPosRankSum=1.682;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4541,542,0 chrXI 412188 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.70;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3769,438,0 chrXI 413234 . A T 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=127;Dels=0.00;FS=5.633;HaplotypeScore=16.6115;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.992;QD=21.72;ReadPosRankSum=2.865;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2791,306,0 chrXI 413439 . G T 3111 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.12;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3144,348,0 chrXI 413537 . C A 2879 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2912,318,0 chrXI 414022 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.87;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2266,258,0 chrXI 414092 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.09;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3625,408,0 chrXI 414446 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9857;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.79;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2661,288,0 chrXI 415378 . A C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=3.060;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-2.010;QD=21.57;ReadPosRankSum=2.391;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1845,213,0 chrXI 415447 . A G 2047 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.89;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2080,240,0 chrXI 415461 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.09;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2087,234,0 chrXI 415517 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.86;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2153,234,0 chrXI 415542 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=10.062;HaplotypeScore=5.0645;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.101;QD=24.03;ReadPosRankSum=2.402;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2532,279,0 chrXI 415974 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3015,333,0 chrXI 416349 . A T 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=3.905;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.991;QD=24.60;ReadPosRankSum=1.637;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3567,381,0 chrXI 416398 . A G 3901.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.55;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3901,459,0 chrXI 416779 . G T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3628,405,0 chrXI 416957 . A T 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.899;QD=20.85;ReadPosRankSum=1.710;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3295,360,0 chrXI 417115 . C G 2445 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2478,279,0 chrXI 417216 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=61.28;MQ0=0;QD=23.04;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2130,234,0 chrXI 417757 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3488,390,0 chrXI 418278 . C A 4044.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.72;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4044,444,0 chrXI 418630 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8990;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.03;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3915,435,0 chrXI 419090 . A G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.199;QD=20.30;ReadPosRankSum=1.699;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2164,246,0 chrXI 419264 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.18;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2273,243,0 chrXI 419358 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.37;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2835,312,0 chrXI 419455 . T A 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4464;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.408;QD=24.59;ReadPosRankSum=1.681;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3344,372,0 chrXI 420060 . G A 2325 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2358,264,0 chrXI 420154 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.98;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1989,219,0 chrXI 420288 . T C 2345 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1507;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2378,270,0 chrXI 420426 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2691,294,0 chrXI 420643 . T G 2527 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.90;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2560,294,0 chrXI 420968 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.98;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3127,342,0 chrXI 421142 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9030;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.66;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3309,369,0 chrXI 421343 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=116;Dels=0.00;FS=2.642;HaplotypeScore=7.4261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.344;QD=22.70;ReadPosRankSum=2.386;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2666,303,0 chrXI 422041 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.72;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3866,420,0 chrXI 422354 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=3.506;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.408;QD=21.58;ReadPosRankSum=1.632;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3032,354,0 chrXI 422714 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.540;QD=24.09;ReadPosRankSum=0.433;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3493,368,0 chrXI 422891 . C A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.84;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3243,357,0 chrXI 423206 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.59;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3939,435,0 chrXI 423380 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=187;Dels=0.00;FS=6.091;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.033;QD=20.23;ReadPosRankSum=2.423;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3783,426,0 chrXI 423496 . A T 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.539;QD=22.91;ReadPosRankSum=1.640;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3459,384,0 chrXI 423545 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.5831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3315,369,0 chrXI 423807 . T C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.873;QD=24.31;ReadPosRankSum=1.703;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2974,333,0 chrXI 424151 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.06;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3505,378,0 chrXI 424283 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=3.688;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.251;QD=21.45;ReadPosRankSum=1.674;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3904,447,0 chrXI 424564 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.96;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3019,324,0 chrXI 424647 . C A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.78;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3353,369,0 chrXI 424739 . G T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3308,363,0 chrXI 424829 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=13.5110;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.48;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2675,291,0 chrXI 425593 . T C 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.4298;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.504;QD=20.73;ReadPosRankSum=1.686;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4726,549,0 chrXI 425840 . A C 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.8545;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.302;QD=20.34;ReadPosRankSum=1.577;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4109,459,0 chrXI 425991 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.18;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2807,315,0 chrXI 426133 . T C 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=6.225;HaplotypeScore=7.2368;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.376;QD=21.98;ReadPosRankSum=2.359;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2407,273,0 chrXI 426490 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=173;Dels=0.00;FS=3.757;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.030;QD=24.20;ReadPosRankSum=1.712;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4186,462,0 chrXI 426749 . G A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.68;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4127,465,0 chrXI 427115 . A T 2866 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.93;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2899,315,0 chrXI 427643 . A T 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=138;Dels=0.00;FS=6.091;HaplotypeScore=9.7564;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.423;QD=22.64;ReadPosRankSum=2.905;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3158,351,0 chrXI 427874 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=193;Dels=0.00;FS=10.791;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.121;QD=24.21;ReadPosRankSum=2.963;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:3,188:193:99:4672,522,0 chrXI 428081 . C G 4948.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.14;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4948,546,0 chrXI 428986 . G A 859 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.28;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:892,99,0 chrXI 429005 . G A 999 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.50;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1032,111,0 chrXI 429076 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=101.0421;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.78;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2174,258,0 chrXI 429113 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=16.29;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2232,249,0 chrXI 429123 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=14.51;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2035,225,0 chrXI 429143 . C T 2203 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=13.94;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2236,246,0 chrXI 429210 . T A 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.859;QD=24.57;ReadPosRankSum=2.401;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3759,396,0 chrXI 429385 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=166;Dels=0.00;FS=14.080;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.449;QD=21.43;ReadPosRankSum=2.849;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3557,399,0 chrXI 429580 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.10;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2853,309,0 chrXI 429643 . G T 2865 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.70;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2898,312,0 chrXI 429656 . C G 2700 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.45;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2733,312,0 chrXI 429690 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=12.575;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-2.150;QD=18.56;ReadPosRankSum=2.953;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:2798,315,0 chrXI 429694 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=154;Dels=0.00;FS=7.858;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.598;QD=18.73;ReadPosRankSum=2.417;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:2,148:154:99:2917,324,0 chrXI 429883 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.09;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2745,297,0 chrXI 429886 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.62;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2878,321,0 chrXI 429958 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.2288;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.12;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3241,360,0 chrXI 430458 . G A 4914.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.65;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,213:217:99:4914,546,0 chrXI 430572 . T G 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.933;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.356;QD=23.22;ReadPosRankSum=1.658;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3274,369,0 chrXI 430641 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=5.705;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.732;QD=19.96;ReadPosRankSum=1.695;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3732,435,0 chrXI 430806 . A T 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=5.305;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=0.731;QD=24.60;ReadPosRankSum=1.692;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4256,471,0 chrXI 430859 . T C 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.674;QD=22.59;ReadPosRankSum=1.668;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2541,282,0 chrXI 430891 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.89;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3055,336,0 chrXI 430903 . G T 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.784;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-1.364;QD=20.74;ReadPosRankSum=-0.823;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2958,333,0 chrXI 431067 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.960;QD=24.27;ReadPosRankSum=1.682;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3373,381,0 chrXI 431184 . A G 3040 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.26;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3073,351,0 chrXI 431261 . C A 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=103;Dels=0.00;FS=2.597;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=1.644;QD=20.80;ReadPosRankSum=2.694;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:3,99:103:99:2175,243,0 chrXI 431262 . T C 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=102;Dels=0.00;FS=2.597;HaplotypeScore=9.9588;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=0.297;QD=20.96;ReadPosRankSum=2.753;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2171,243,0 chrXI 431353 . T A 847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=7.618;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=-1.466;QD=16.29;ReadPosRankSum=1.599;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:96:880,96,0 chrXI 431356 . A T 963 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=16.89;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:996,108,0 chrXI 431381 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=18.79;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1386,156,0 chrXI 431473 . A G 1770 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.45;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1803,207,0 chrXI 431506 . T A 943 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=59.0775;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=13.47;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:976,108,0 chrXI 431520 . G A 728 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=9.45;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:87:761,87,0 chrXI 431525 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=8.94;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:90:793,90,0 chrXI 431543 . G A 948 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=10.77;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:981,111,0 chrXI 431565 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6594;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=13.36;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1610,183,0 chrXI 431610 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=177;Dels=0.00;FS=12.575;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-0.076;QD=17.64;ReadPosRankSum=2.394;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3156,375,0 chrXI 431617 . G C 3409.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=17.94;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3409,384,0 chrXI 431634 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.91;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3422,378,0 chrXI 431700 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=19.20;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2087,231,0 chrXI 431836 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.3676;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.20;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:3965,459,0 chrXI 432086 . G T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.74;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3478,381,0 chrXI 432094 . A T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.17;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3680,396,0 chrXI 432111 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.36;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3652,396,0 chrXI 432159 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.17;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3145,351,0 chrXI 432238 . G T 1590 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1623,183,0 chrXI 432569 . C G 1763 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=25.55;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1796,198,0 chrXI 432748 . A G 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;MQRankSum=-1.526;QD=21.92;ReadPosRankSum=1.698;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2247,255,0 chrXI 432925 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.25;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1329,144,0 chrXI 433122 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.83;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2964,327,0 chrXI 433175 . C A 2758 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.78;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2791,315,0 chrXI 433506 . C A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.68;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3380,363,0 chrXI 433563 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.89;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3365,372,0 chrXI 433630 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=159;Dels=0.00;FS=6.982;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.412;QD=20.94;ReadPosRankSum=2.356;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3330,363,0 chrXI 433647 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=19.82;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3185,357,0 chrXI 433660 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5546;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.15;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2982,333,0 chrXI 433721 . A G 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.358;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.160;QD=18.90;ReadPosRankSum=1.652;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2490,282,0 chrXI 433722 . T A 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=133;Dels=0.00;FS=3.013;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.250;QD=19.57;ReadPosRankSum=2.413;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2636,285,0 chrXI 433806 . T C 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=130;Dels=0.00;FS=6.903;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.861;QD=21.64;ReadPosRankSum=2.412;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2846,321,0 chrXI 433909 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.00;FS=3.036;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.204;QD=22.53;ReadPosRankSum=2.400;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3402,390,0 chrXI 434075 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.03;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3428,360,0 chrXI 434079 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.85;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3295,369,0 chrXI 434236 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.76;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4090,459,0 chrXI 434397 . C A 5507.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.37;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5507,597,0 chrXI 434538 . C T 4867.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.71;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4867,543,0 chrXI 434546 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.04;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4735,528,0 chrXI 434693 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.2542;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.41;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3844,429,0 chrXI 434756 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=155;Dels=0.00;FS=2.569;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.902;QD=19.35;ReadPosRankSum=2.941;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3032,345,0 chrXI 434978 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.06;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2900,309,0 chrXI 435357 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.66;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2801,303,0 chrXI 435441 . T C 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=4.393;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.131;QD=21.17;ReadPosRankSum=1.706;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2827,312,0 chrXI 435621 . T C 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=124;Dels=0.00;FS=2.703;HaplotypeScore=6.5046;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.690;QD=22.66;ReadPosRankSum=2.350;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2843,318,0 chrXI 435639 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.14;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2792,312,0 chrXI 435648 . A G 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=4.346;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.248;QD=19.36;ReadPosRankSum=1.707;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2705,306,0 chrXI 435807 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.3898;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.269;QD=22.43;ReadPosRankSum=1.584;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4195,471,0 chrXI 435882 . G T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.90;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4248,471,0 chrXI 436087 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=17.7693;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.85;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3794,417,0 chrXI 436826 . G T 1977 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=14.98;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2010,216,0 chrXI 436846 . A C 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=108;Dels=0.00;FS=5.950;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.802;QD=19.45;ReadPosRankSum=2.934;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:3,104:108:99:2134,240,0 chrXI 436933 . A T 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=127;Dels=0.00;FS=5.017;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.214;QD=19.75;ReadPosRankSum=1.596;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2541,285,0 chrXI 436938 . T G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.030;QD=21.04;ReadPosRankSum=2.389;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2600,297,0 chrXI 437047 . T C 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.894;QD=23.79;ReadPosRankSum=1.710;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3735,429,0 chrXI 437157 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.6073;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.16;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3648,393,0 chrXI 437524 . T G 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.0987;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.116;QD=21.58;ReadPosRankSum=1.037;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4013,456,0 chrXI 437585 . G C 4939.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.0925;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.41;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4939,549,0 chrXI 437754 . C T 4361.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.45;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4361,465,0 chrXI 437891 . T C 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.252;DP=179;Dels=0.00;FS=15.359;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.558;QD=22.95;ReadPosRankSum=3.371;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:4,173:179:99:4108,471,0 chrXI 437935 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.86;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3505,372,0 chrXI 437983 . T A 2619 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.77;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2652,297,0 chrXI 438169 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.61;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3504,384,0 chrXI 438376 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.15;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3057,345,0 chrXI 438455 . C G 2944 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.97;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2977,339,0 chrXI 438489 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7779;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.53;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3069,327,0 chrXI 438764 . G A 600 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.69;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:69:633,69,0 chrXI 439212 . C T 5490.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=23.87;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5490,612,0 chrXI 439244 . G A 5611.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.8403;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.19;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5611,609,0 chrXI 439266 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.97;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4313,480,0 chrXI 439278 . A C 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=212;Dels=0.00;FS=6.467;HaplotypeScore=8.0835;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.240;QD=18.46;ReadPosRankSum=2.379;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:3913,450,0 chrXI 439411 . A T 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=208;Dels=0.00;FS=2.560;HaplotypeScore=7.3645;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.580;QD=19.95;ReadPosRankSum=2.889;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4150,462,0 chrXI 439416 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.2741;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.47;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3972,444,0 chrXI 439500 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.64;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3442,384,0 chrXI 439560 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.07;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3088,336,0 chrXI 439568 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.44;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3058,342,0 chrXI 439704 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.73;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3417,378,0 chrXI 439746 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.80;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2998,321,0 chrXI 439751 . T C 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=132;Dels=0.00;FS=8.849;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.697;QD=20.45;ReadPosRankSum=3.365;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:4,128:132:99:2733,312,0 chrXI 439813 . A C 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6661;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.052;QD=20.19;ReadPosRankSum=1.706;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2718,306,0 chrXI 439852 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.31;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3426,360,0 chrXI 439879 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.07;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3057,333,0 chrXI 439946 . A G 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.916;DP=84;Dels=0.02;FS=4.743;HaplotypeScore=27.9063;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-1.875;QD=17.67;ReadPosRankSum=4.298;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:7,75:82:99:1517,174,0 chrXI 439977 . T A 50.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=70;Dels=0.00;FS=4.555;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=1.809;QD=0.73;ReadPosRankSum=3.226;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:4,66:70:9:83,9,0 chrXI 439996 . A C 1120 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.06;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1153,138,0 chrXI 440093 . A G 667 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:700,78,0 chrXI 440216 . T C 284 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:36:317,36,0 chrXI 440297 . C T 2692 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.64;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2725,300,0 chrXI 440333 . A G 1906 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1939,225,0 chrXI 440346 . G C 1440 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1473,162,0 chrXI 440396 . T C 1166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.583;QD=15.76;ReadPosRankSum=2.283;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1199,135,0 chrXI 440499 . T G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.832;HaplotypeScore=7.9206;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.796;QD=24.28;ReadPosRankSum=1.593;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4225,483,0 chrXI 440556 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.85;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3553,384,0 chrXI 440644 . T A 3204 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.22;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3237,351,0 chrXI 440701 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.69;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2552,285,0 chrXI 440752 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2799,309,0 chrXI 440899 . G C 3059 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3092,345,0 chrXI 441214 . C T 4678.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.04;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4678,507,0 chrXI 441706 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3800,423,0 chrXI 441811 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=16.7996;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.990;QD=20.77;ReadPosRankSum=1.687;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3232,366,0 chrXI 442021 . C T 4563.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.05;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4563,495,0 chrXI 442273 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.68;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3794,432,0 chrXI 442302 . T G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.035;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.6585;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.760;QD=22.15;ReadPosRankSum=1.070;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3965,450,0 chrXI 442829 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3564,399,0 chrXI 443215 . C G 2543 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.12;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2576,288,0 chrXI 443630 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4894;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.84;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4089,480,0 chrXI 443730 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.50;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3353,369,0 chrXI 444125 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3685,420,0 chrXI 444224 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.41;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3554,399,0 chrXI 444993 . C A 2019 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=8.2179;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.71;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,89:92:99:2052,225,0 chrXI 445038 . G A 2828 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.59;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2861,309,0 chrXI 445062 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.91;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3276,360,0 chrXI 445342 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=188;Dels=0.00;FS=6.234;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.195;QD=21.54;ReadPosRankSum=2.357;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4049,471,0 chrXI 445854 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=2.872;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.560;QD=22.98;ReadPosRankSum=2.391;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3883,429,0 chrXI 446448 . T A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.43;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3538,384,0 chrXI 446566 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2132,240,0 chrXI 446820 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1447,159,0 chrXI 447357 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3612,387,0 chrXI 447432 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3317,372,0 chrXI 447586 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.60;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3304,360,0 chrXI 447799 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.6270;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.82;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3970,441,0 chrXI 447842 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.40;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3604,411,0 chrXI 447902 . G T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=25.23;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3784,414,0 chrXI 448011 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.8794;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.03;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2935,321,0 chrXI 448103 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.1792;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.50;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2720,306,0 chrXI 448110 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=131;Dels=0.00;FS=9.873;HaplotypeScore=5.6555;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.445;QD=20.79;ReadPosRankSum=2.883;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:3,126:131:99:2756,309,0 chrXI 448143 . A C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.619;QD=21.86;ReadPosRankSum=1.704;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2722,321,0 chrXI 448508 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.165;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.126;QD=20.28;ReadPosRankSum=1.708;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2933,342,0 chrXI 448511 . G C 2812 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.39;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2845,336,0 chrXI 448656 . A T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.99;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3931,426,0 chrXI 448686 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.97;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4267,468,0 chrXI 448716 . T A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.50;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3901,426,0 chrXI 448805 . C G 3669.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.51;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3669,417,0 chrXI 448952 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=22.86;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4297,474,0 chrXI 448997 . G C 4489.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.90;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4489,504,0 chrXI 449097 . T C 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=205;Dels=0.00;FS=6.303;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.005;QD=21.19;ReadPosRankSum=0.187;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4344,504,0 chrXI 449124 . C T 3818.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=19.58;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3818,423,0 chrXI 449136 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=19.01;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3763,420,0 chrXI 449167 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=17.60;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3714,399,0 chrXI 449175 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=16.74;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3431,366,0 chrXI 449192 . T C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=200;Dels=0.00;FS=8.213;HaplotypeScore=9.0222;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.374;QD=15.30;ReadPosRankSum=2.388;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3093,342,0 chrXI 449253 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.385;QD=19.91;ReadPosRankSum=1.694;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3583,405,0 chrXI 449495 . C T 3187 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.39;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3220,357,0 chrXI 449566 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=4.278;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.614;QD=24.04;ReadPosRankSum=1.666;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3822,426,0 chrXI 449597 . T G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=164;Dels=0.00;FS=15.787;HaplotypeScore=15.9181;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.261;QD=22.85;ReadPosRankSum=3.406;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3748,420,0 chrXI 449753 . C T 4550.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.86;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4550,498,0 chrXI 450210 . C A 2902 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.97;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2935,312,0 chrXI 450894 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.75;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3420,375,0 chrXI 450921 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.22;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3258,372,0 chrXI 450942 . A T 2979 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.10;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3012,336,0 chrXI 450979 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=169;Dels=0.00;FS=5.618;HaplotypeScore=7.4289;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.804;QD=21.79;ReadPosRankSum=2.959;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3683,408,0 chrXI 451012 . G T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.79;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4671,507,0 chrXI 451133 . A C 5463.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.7992;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.76;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5463,618,0 chrXI 452719 . C G 2800 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4833;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2833,330,0 chrXI 452823 . A G 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=3.089;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.464;QD=23.53;ReadPosRankSum=1.701;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2668,297,0 chrXI 453079 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7625;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.63;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3648,399,0 chrXI 453381 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.67;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3316,381,0 chrXI 453611 . C G 2363 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.37;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2396,264,0 chrXI 453612 . T C 2223 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.33;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2256,264,0 chrXI 453793 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.80;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3645,393,0 chrXI 454007 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2064;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.542;QD=22.88;ReadPosRankSum=1.690;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3730,420,0 chrXI 454594 . T C 5658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.084;QD=24.60;ReadPosRankSum=1.717;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5658,636,0 chrXI 455417 . G A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.07;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4061,432,0 chrXI 455430 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.18;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3748,411,0 chrXI 455903 . A C 4306.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.06;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4306,489,0 chrXI 455972 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=4.124;HaplotypeScore=4.2166;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.165;QD=18.36;ReadPosRankSum=1.691;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3135,369,0 chrXI 455980 . A T 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.591;DP=172;Dels=0.00;FS=23.357;HaplotypeScore=11.1364;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.611;QD=19.03;ReadPosRankSum=3.600;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:5,167:172:99:3273,366,0 chrXI 456143 . T A 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.497;DP=174;Dels=0.00;FS=12.167;HaplotypeScore=14.3029;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.231;QD=20.09;ReadPosRankSum=2.682;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3496,393,0 chrXI 456155 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.39;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3807,435,0 chrXI 456734 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.00;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3894,444,0 chrXI 456743 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=203;Dels=0.00;FS=4.600;HaplotypeScore=8.2229;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.949;QD=17.97;ReadPosRankSum=1.697;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,198:203:99:3647,417,0 chrXI 456866 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.06;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4104,462,0 chrXI 457094 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,151:157:99:3399,369,0 chrXI 457349 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.11;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2620,300,0 chrXI 457446 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.52;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2996,333,0 chrXI 457465 . G C 2949 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.37;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2982,348,0 chrXI 457579 . C A 2705 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=23.73;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2738,303,0 chrXI 457589 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.79;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2654,285,0 chrXI 457680 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.06;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3298,351,0 chrXI 457702 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.746;DP=136;Dels=0.00;FS=8.059;HaplotypeScore=2.7381;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.414;QD=20.74;ReadPosRankSum=3.734;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:5,130:136:99:2854,330,0 chrXI 457721 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=4.491;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.962;QD=20.50;ReadPosRankSum=1.706;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2801,318,0 chrXI 457774 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.12;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3041,336,0 chrXI 457806 . G T 3016 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.52;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3049,327,0 chrXI 457807 . G C 2822 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.60;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2855,327,0 chrXI 457945 . T C 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;MQRankSum=-0.212;QD=22.68;ReadPosRankSum=1.682;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3185,363,0 chrXI 458003 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=23.48;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3085,336,0 chrXI 458216 . A T 224.41 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.14;MQ0=6;MQRankSum=1.448;QD=12.47;ReadPosRankSum=-1.159;SB=-1.202e+02 GT:AD:DP:GQ:PL 1/1:7,11:18:13:257,13,0 chrXI 458471 . A T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=1;QD=1.86;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,7:8:6:46,6,0 chrXI 458520 . G C 742 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=15.46;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:775,90,0 chrXI 458607 . C T 808 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=12;QD=17.19;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:5,42:47:93:841,93,0 chrXI 458781 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.57;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2072,231,0 chrXI 458817 . T C 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.448;QD=23.62;ReadPosRankSum=1.693;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2135,240,0 chrXI 459142 . T C 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=179;Dels=0.00;FS=3.015;HaplotypeScore=18.3417;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.139;QD=22.80;ReadPosRankSum=2.408;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4082,468,0 chrXI 459200 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.1745;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.30;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3611,399,0 chrXI 459484 . C A 2331 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.55;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2364,258,0 chrXI 459513 . T C 2099 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.99;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2132,237,0 chrXI 459567 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8518;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.67;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2482,285,0 chrXI 459630 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.45;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3143,342,0 chrXI 459646 . A C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=156;Dels=0.00;FS=15.829;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.019;QD=21.81;ReadPosRankSum=2.955;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3403,381,0 chrXI 459691 . T C 3156 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.23;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3189,351,0 chrXI 459882 . A C 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=3.605;HaplotypeScore=21.1970;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.140;QD=23.80;ReadPosRankSum=1.716;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:5069,570,0 chrXI 460324 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=19.56;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3501,381,0 chrXI 460331 . C G 3187 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.02;FS=0.000;HaplotypeScore=7.5771;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=17.61;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3220,372,0 chrXI 460360 . T C 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=203;Dels=0.00;FS=2.613;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-2.121;QD=15.12;ReadPosRankSum=2.413;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:3102,348,0 chrXI 460364 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=14.71;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3107,342,0 chrXI 460537 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.77;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3613,417,0 chrXI 460882 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3962;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.98;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2803,312,0 chrXI 460937 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.614;QD=22.03;ReadPosRankSum=1.678;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2875,321,0 chrXI 461094 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3814;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.21;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3366,366,0 chrXI 461216 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.4541;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.42;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2946,324,0 chrXI 461443 . A G 2863 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.09;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2896,330,0 chrXI 461450 . A C 2645 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.61;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2678,309,0 chrXI 462364 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.33;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3552,393,0 chrXI 462779 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=22.67;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4035,435,0 chrXI 462789 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=6.143;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-1.890;QD=20.38;ReadPosRankSum=2.368;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3668,417,0 chrXI 462819 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.87;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3457,387,0 chrXI 462821 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.106;QD=19.73;ReadPosRankSum=1.693;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3531,405,0 chrXI 462930 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4115,444,0 chrXI 462985 . T A 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=174;Dels=0.00;FS=6.563;HaplotypeScore=15.7786;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.094;QD=22.04;ReadPosRankSum=2.365;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3835,429,0 chrXI 463033 . C G 4398.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.4300;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=22.67;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4398,501,0 chrXI 463071 . G A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=25.23;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4692,507,0 chrXI 463630 . T C 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.543;DP=220;Dels=0.00;FS=22.401;HaplotypeScore=24.4217;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.136;QD=14.53;ReadPosRankSum=3.737;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:5,213:220:99:3229,372,0 chrXI 463936 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=192;Dels=0.00;FS=9.592;HaplotypeScore=20.5107;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=2.595;QD=21.79;ReadPosRankSum=2.953;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:4183,468,0 chrXI 464063 . A C 5322.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=16.6630;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.87;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5322,618,0 chrXI 464192 . A G 5841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.2904;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.677;QD=21.96;ReadPosRankSum=1.706;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:5841,645,0 chrXI 464444 . T C 474.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.138;DP=423;Dels=0.00;FS=11.990;HaplotypeScore=11.5825;MLEAC=1;MLEAF=0.500;MQ=43.86;MQ0=0;MQRankSum=-10.979;QD=1.12;ReadPosRankSum=0.371;SB=-1.508e+03 GT:AD:DP:GQ:PL 0/1:232,190:423:99:504,0,3167 chrXI 464447 . C T 607.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.144;DP=410;Dels=0.00;FS=9.225;HaplotypeScore=208.3953;MLEAC=1;MLEAF=0.500;MQ=42.86;MQ0=0;MQRankSum=-11.040;QD=1.48;ReadPosRankSum=1.355;SB=-1.621e+03 GT:AD:DP:GQ:PL 0/1:210,198:410:99:637,0,2721 chrXI 464453 . T C 3953.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.973;DP=413;Dels=0.00;FS=2.549;HaplotypeScore=265.3997;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;MQRankSum=-1.689;QD=9.57;ReadPosRankSum=2.963;SB=-3.781e+03 GT:AD:DP:GQ:PL 1/1:3,400:413:99:3953,438,0 chrXI 464462 . T C 1399.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.807;DP=433;Dels=0.00;FS=14.360;HaplotypeScore=291.3855;MLEAC=1;MLEAF=0.500;MQ=42.39;MQ0=0;MQRankSum=-0.619;QD=3.23;ReadPosRankSum=-7.154;SB=-5.580e+02 GT:AD:DP:GQ:PL 0/1:288,145:433:99:1429,0,242 chrXI 464549 . T C 8417.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.016;DP=493;Dels=0.00;FS=24.025;HaplotypeScore=26.9031;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-2.025;QD=17.07;ReadPosRankSum=4.208;SB=-4.440e+03 GT:AD:DP:GQ:PL 1/1:6,483:493:99:8417,989,0 chrXI 464717 . G A 6782.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=21.1302;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.00;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:6782,762,0 chrXI 464863 . A C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.335;QD=19.54;ReadPosRankSum=1.656;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3557,408,0 chrXI 465319 . T C 1445 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1478,168,0 chrXI 465781 . A G 6788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.348;QD=22.78;ReadPosRankSum=1.697;SB=-3.827e+03 GT:AD:DP:GQ:PL 1/1:1,297:298:99:6788,750,0 chrXI 465811 . T C 6086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=288;Dels=0.00;FS=3.212;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.585;QD=21.13;ReadPosRankSum=1.720;SB=-3.523e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:6086,699,0 chrXI 465951 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=189;Dels=0.00;FS=2.482;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.665;QD=21.95;ReadPosRankSum=2.952;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4148,465,0 chrXI 466102 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=3.278;HaplotypeScore=10.6154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.680;QD=22.12;ReadPosRankSum=1.706;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:3064,354,0 chrXI 466582 . C A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3961,444,0 chrXI 466619 . A T 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=173;Dels=0.01;FS=3.139;HaplotypeScore=39.4527;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;MQRankSum=-0.273;QD=21.97;ReadPosRankSum=1.651;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3801,429,0 chrXI 466856 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.72;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3771,420,0 chrXI 466913 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.66;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3422,387,0 chrXI 466940 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.64;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3309,372,0 chrXI 466983 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.1518;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=23.93;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3374,369,0 chrXI 467080 . G C 2057 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.78;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2090,234,0 chrXI 467162 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.892;QD=18.66;ReadPosRankSum=1.707;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2590,297,0 chrXI 467228 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=20.32;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2288,246,0 chrXI 467237 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=18.81;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2158,240,0 chrXI 467243 . T C 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=7.360;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.591;QD=19.00;ReadPosRankSum=2.401;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1971,219,0 chrXI 467328 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.87;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2830,321,0 chrXI 467333 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.66;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2871,312,0 chrXI 467504 . G C 4791.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.0557;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.81;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4791,560,0 chrXI 467564 . T G 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.620;QD=23.23;ReadPosRankSum=1.714;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4437,507,0 chrXI 467597 . G A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.96;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4217,468,0 chrXI 467627 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.41;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4192,465,0 chrXI 467651 . T C 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=232;Dels=0.00;FS=4.017;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.015;QD=19.79;ReadPosRankSum=1.717;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4591,510,0 chrXI 467666 . A G 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=246;Dels=0.00;FS=5.828;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.588;QD=19.86;ReadPosRankSum=2.939;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:4885,564,0 chrXI 467711 . A G 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;DP=242;Dels=0.00;FS=5.876;HaplotypeScore=13.6426;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.946;QD=20.50;ReadPosRankSum=1.610;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:4962,558,0 chrXI 467744 . A G 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=210;Dels=0.00;FS=2.904;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.111;QD=22.61;ReadPosRankSum=2.414;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4749,543,0 chrXI 467777 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=177;Dels=0.00;FS=7.896;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.995;QD=19.28;ReadPosRankSum=2.336;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,171:177:99:3412,399,0 chrXI 468107 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.5847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2700,297,0 chrXI 468233 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3172,336,0 chrXI 468315 . A T 2352 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.25;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2385,270,0 chrXI 468458 . A G 2303 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.93;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2336,267,0 chrXI 468540 . T C 1989 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.62;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2022,225,0 chrXI 468565 . T C 1474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.472;QD=18.42;ReadPosRankSum=1.646;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1507,171,0 chrXI 468684 . C A 1472 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=17.52;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1505,168,0 chrXI 468708 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.55;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1773,198,0 chrXI 468928 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.79;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2403,264,0 chrXI 469130 . C T 3581.01 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=24.20;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3581,393,0 chrXI 469133 . G A 3591.01 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.65;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3591,378,0 chrXI 469134 . C T 3442.01 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=24.07;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3442,378,0 chrXI 469182 . T C 2504 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.83;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2537,282,0 chrXI 469258 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.211;QD=22.94;ReadPosRankSum=2.376;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3107,342,0 chrXI 469355 . G T 2894 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=19.7750;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.34;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2927,321,0 chrXI 469480 . A G 2402 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.51;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2435,270,0 chrXI 469538 . T C 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=6.267;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.245;QD=19.52;ReadPosRankSum=2.340;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1790,201,0 chrXI 469557 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.81;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1689,180,0 chrXI 469561 . G A 1598 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.37;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1631,180,0 chrXI 469692 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.01;FS=4.822;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.592;QD=22.66;ReadPosRankSum=1.672;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3965,441,0 chrXI 469719 . G C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.25;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3894,447,0 chrXI 469831 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4054;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.11;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4135,447,0 chrXI 470250 . T A 2093 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.75;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2126,240,0 chrXI 470487 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.51;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3160,351,0 chrXI 470511 . T C 2696 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.23;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2729,318,0 chrXI 470556 . T C 2656 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.12;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2689,309,0 chrXI 470607 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3308,357,0 chrXI 470676 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.27;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3741,423,0 chrXI 470697 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3600;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.23;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3824,432,0 chrXI 470858 . G C 4494.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.70;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4494,510,0 chrXI 470988 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.29;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3656,402,0 chrXI 471138 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=161;Dels=0.00;FS=6.982;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.817;QD=21.04;ReadPosRankSum=2.356;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,156:161:99:3388,399,0 chrXI 471198 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.01;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3346,363,0 chrXI 471237 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.5934;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.564;QD=18.28;ReadPosRankSum=1.708;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:2738,309,0 chrXI 471301 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.57;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2885,312,0 chrXI 471365 . T G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=6.914;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.180;QD=20.96;ReadPosRankSum=1.701;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2422,273,0 chrXI 471379 . C A 2622 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.03;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2655,288,0 chrXI 471593 . A G 1776 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.66;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1809,201,0 chrXI 471654 . A T 1885 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.04;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1918,219,0 chrXI 471663 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.31;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1867,201,0 chrXI 472114 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.2644;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.39;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3493,393,0 chrXI 472789 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.22;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3639,420,0 chrXI 472885 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=178;Dels=0.00;FS=8.714;HaplotypeScore=10.3849;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.212;QD=21.92;ReadPosRankSum=3.342;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3902,453,0 chrXI 472945 . C T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.86;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4749,531,0 chrXI 473123 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=187;Dels=0.00;FS=6.980;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.781;QD=22.49;ReadPosRankSum=2.423;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4206,468,0 chrXI 473525 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.191;QD=21.66;ReadPosRankSum=1.705;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2806,315,0 chrXI 473530 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.54;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2905,315,0 chrXI 473650 . G A 4399.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=19.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4399,474,0 chrXI 473897 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.60;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3989,444,0 chrXI 474020 . T C 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.063;QD=22.76;ReadPosRankSum=1.707;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3196,360,0 chrXI 474395 . G A 5100.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.18;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:5100,564,0 chrXI 474932 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.539;QD=22.12;ReadPosRankSum=1.675;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4093,450,0 chrXI 474947 . C T 4103.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.06;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4103,462,0 chrXI 474977 . T C 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=194;Dels=0.00;FS=13.501;HaplotypeScore=9.6718;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.454;QD=20.85;ReadPosRankSum=3.361;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4045,459,0 chrXI 475292 . C A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.21;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3886,426,0 chrXI 475298 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7668;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.98;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3756,423,0 chrXI 475354 . T G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.138;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.312;QD=19.28;ReadPosRankSum=1.712;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3354,375,0 chrXI 475376 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.052;QD=19.26;ReadPosRankSum=1.711;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3172,363,0 chrXI 475412 . A G 3083 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.28;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3116,351,0 chrXI 475448 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.27;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3933,432,0 chrXI 475709 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.13;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3281,345,0 chrXI 475733 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.58;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3681,402,0 chrXI 475940 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.50;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3487,387,0 chrXI 475980 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.69;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3579,405,0 chrXI 476045 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.514;QD=22.94;ReadPosRankSum=1.708;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3303,366,0 chrXI 476134 . A T 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.897;HaplotypeScore=8.2215;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.210;QD=24.25;ReadPosRankSum=1.710;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3808,405,0 chrXI 476611 . T A 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=172;Dels=0.00;FS=3.030;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.021;QD=21.26;ReadPosRankSum=2.421;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3657,396,0 chrXI 477203 . T C 4977.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.36;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4977,587,0 chrXI 477776 . A G 4254.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.37;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4254,486,0 chrXI 479195 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.4147;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.095;QD=22.37;ReadPosRankSum=1.690;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3669,423,0 chrXI 479521 . A G 3144 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.18;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3177,357,0 chrXI 480070 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2737,306,0 chrXI 480455 . A C 2632 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2665,315,0 chrXI 480529 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3232,357,0 chrXI 480565 . C T 2495 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.68;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2528,276,0 chrXI 480613 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.93;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2248,243,0 chrXI 480844 . T C 4343.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.40;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4343,492,0 chrXI 481041 . A G 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;DP=194;Dels=0.00;FS=2.666;HaplotypeScore=16.6575;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.655;QD=22.07;ReadPosRankSum=0.248;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4282,461,0 chrXI 481321 . A T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4078,444,0 chrXI 482428 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.10;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3244,363,0 chrXI 483350 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=158;Dels=0.00;FS=2.748;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=1.135;QD=23.10;ReadPosRankSum=2.418;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3650,408,0 chrXI 483400 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.56;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2351,261,0 chrXI 483401 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=18.01;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2446,267,0 chrXI 483577 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.88;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2265,264,0 chrXI 483600 . T C 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.247;DP=109;Dels=0.00;FS=17.398;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-1.346;QD=18.26;ReadPosRankSum=3.296;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:4,105:109:99:2023,231,0 chrXI 483614 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.84;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2245,252,0 chrXI 483858 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.60;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4059,441,0 chrXI 484090 . C T 3608.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.54;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3608,387,0 chrXI 484132 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=16.9163;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.30;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3985,441,0 chrXI 484168 . A T 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.713;QD=24.10;ReadPosRankSum=1.713;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4482,495,0 chrXI 484474 . C T 4942.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.57;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4942,555,0 chrXI 484739 . G A 4796.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.17;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4796,540,0 chrXI 484909 . A T 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.307;QD=22.03;ReadPosRankSum=1.702;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2544,285,0 chrXI 485195 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=20.32;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1496,165,0 chrXI 485495 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6759;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.60;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2587,291,0 chrXI 485630 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.04;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3678,402,0 chrXI 486233 . A T 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=169;Dels=0.00;FS=2.956;HaplotypeScore=12.0472;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.603;QD=22.53;ReadPosRankSum=2.391;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3807,420,0 chrXI 486393 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=140;Dels=0.00;FS=6.974;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.483;QD=23.63;ReadPosRankSum=2.379;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3308,366,0 chrXI 486704 . A G 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=259;Dels=0.00;FS=2.746;HaplotypeScore=17.2023;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.465;QD=21.49;ReadPosRankSum=2.421;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:2,254:259:99:5567,648,0 chrXI 487095 . G C 2980 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=18.6533;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.41;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3013,336,0 chrXI 487361 . T A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.38;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3693,399,0 chrXI 487567 . G C 1935 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.19;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1968,219,0 chrXI 487615 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.76;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1901,213,0 chrXI 487626 . C A 2495 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.54;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2528,273,0 chrXI 488000 . G T 4750.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.0447;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.79;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4750,528,0 chrXI 488006 . C T 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.538;QD=21.46;ReadPosRankSum=1.246;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4592,507,0 chrXI 488186 . A G 5241.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.71;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5241,588,0 chrXI 488282 . A G 4872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.157;QD=20.05;ReadPosRankSum=1.703;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:4872,561,0 chrXI 488294 . G A 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.3257;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.196;QD=20.56;ReadPosRankSum=-0.732;SB=-3.067e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:4954,517,0 chrXI 488405 . T A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.8934;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.97;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3999,456,0 chrXI 488573 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.556;QD=21.24;ReadPosRankSum=1.693;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3760,426,0 chrXI 488665 . C G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3257,375,0 chrXI 489458 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2319,258,0 chrXI 489732 . A T 1978 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=23.27;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2011,222,0 chrXI 489820 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=19.35;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2258,249,0 chrXI 489879 . A T 2089 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.52;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2122,237,0 chrXI 489903 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.94;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2097,240,0 chrXI 489931 . C A 2617 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=22.37;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2650,279,0 chrXI 489952 . G A 2363 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=19.53;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2396,273,0 chrXI 489975 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=18.65;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1879,213,0 chrXI 490017 . A G 1262 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=54.9373;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=15.58;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1295,147,0 chrXI 490084 . G A 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=0.485;QD=21.76;ReadPosRankSum=-0.291;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2775,303,0 chrXI 490112 . G A 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.706;DP=134;Dels=0.00;FS=5.360;HaplotypeScore=4.4270;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.595;QD=23.86;ReadPosRankSum=1.448;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3230,334,0 chrXI 490208 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.91;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1802,204,0 chrXI 490246 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=67.3789;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=17.42;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1496,168,0 chrXI 490284 . G T 1657 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.03;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=16.41;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1690,186,0 chrXI 490311 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=14.04;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1549,174,0 chrXI 490312 . G A 1538 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=14.24;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1571,174,0 chrXI 490335 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=14.25;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1558,177,0 chrXI 490356 . T A 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=-1.551;QD=11.78;ReadPosRankSum=1.672;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1388,150,0 chrXI 490358 . A C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=5.693;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=-1.069;QD=11.30;ReadPosRankSum=1.702;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1332,150,0 chrXI 490374 . A G 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.02;FS=5.367;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=-0.577;QD=10.96;ReadPosRankSum=1.703;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1337,156,0 chrXI 490506 . A T 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;MQRankSum=-0.231;QD=19.83;ReadPosRankSum=1.709;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3008,330,0 chrXI 490531 . G T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=21.19;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3433,378,0 chrXI 490578 . A G 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=122;Dels=0.00;FS=2.753;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;MQRankSum=-1.200;QD=20.83;ReadPosRankSum=2.349;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2574,291,0 chrXI 490620 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.8749;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=0.490;QD=18.37;ReadPosRankSum=1.694;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1741,198,0 chrXI 490671 . C G 1456 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1489,165,0 chrXI 490945 . T A 672 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=17.23;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:705,78,0 chrXI 490946 . T C 715 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=17.02;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:748,87,0 chrXI 491161 . T C 1780 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.72;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1813,204,0 chrXI 491399 . A G 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=3.288;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.169;QD=22.93;ReadPosRankSum=1.701;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2647,294,0 chrXI 491562 . A G 3175 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4423;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.24;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3208,357,0 chrXI 491862 . A C 3089 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.05;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3122,357,0 chrXI 491873 . T C 3092 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.93;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3125,363,0 chrXI 492251 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=152;Dels=0.00;FS=2.766;HaplotypeScore=7.7592;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.582;QD=21.68;ReadPosRankSum=2.400;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3296,372,0 chrXI 492262 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.08;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3174,354,0 chrXI 493124 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=165;Dels=0.00;FS=2.990;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.482;QD=23.32;ReadPosRankSum=2.375;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3847,444,0 chrXI 493193 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.46;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3332,372,0 chrXI 493438 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.19;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2555,279,0 chrXI 493653 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=14.03;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1127,120,0 chrXI 494125 . C A 2187 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.32;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2220,249,0 chrXI 494359 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.9839;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.35;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3689,411,0 chrXI 494502 . G T 2913 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2946,324,0 chrXI 494622 . T A 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.436;QD=24.24;ReadPosRankSum=1.682;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3369,366,0 chrXI 494661 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3434,375,0 chrXI 495036 . C T 4775.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.52;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4775,525,0 chrXI 495081 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.92;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3278,363,0 chrXI 495360 . G C 4454.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.16;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4454,519,0 chrXI 495507 . T C 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=204;Dels=0.00;FS=6.078;HaplotypeScore=14.1005;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.619;QD=21.03;ReadPosRankSum=2.946;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:4291,495,0 chrXI 495588 . C T 5126.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.1450;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.84;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5126,570,0 chrXI 495815 . A G 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=192;Dels=0.01;FS=0.000;HaplotypeScore=17.0351;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.531;QD=21.18;ReadPosRankSum=3.167;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4067,434,0 chrXI 495938 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.02;FS=0.000;HaplotypeScore=25.4071;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.60;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3338,363,0 chrXI 495985 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.32;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3621,393,0 chrXI 496074 . A G 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=3.253;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.551;QD=22.73;ReadPosRankSum=1.705;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2965,339,0 chrXI 496185 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.52;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2938,315,0 chrXI 496275 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.69;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3336,366,0 chrXI 496317 . A T 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=150;Dels=0.00;FS=9.601;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.352;QD=20.27;ReadPosRankSum=2.368;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3074,339,0 chrXI 496326 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.43;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3077,342,0 chrXI 496395 . A G 2982 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.01;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3015,345,0 chrXI 496396 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.25;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3242,348,0 chrXI 496416 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.9255;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.79;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3901,423,0 chrXI 496962 . C T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4055,441,0 chrXI 497544 . A T 1407 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1440,159,0 chrXI 497576 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.81;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1628,180,0 chrXI 497626 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.88;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1886,210,0 chrXI 497702 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.95;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2007,225,0 chrXI 497746 . T C 2670 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.02;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2703,306,0 chrXI 498054 . T C 2241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.536;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.642;QD=20.75;ReadPosRankSum=1.604;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2274,261,0 chrXI 498225 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1741,192,0 chrXI 499168 . G T 5114.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.6873;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.53;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5114,564,0 chrXI 499999 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.38;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3584,399,0 chrXI 500101 . A G 2050 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2083,237,0 chrXI 500136 . C A 2030 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.07;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2063,228,0 chrXI 500262 . C A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.15;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3583,384,0 chrXI 500383 . T C 2460 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.57;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2493,279,0 chrXI 500449 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=2.896;HaplotypeScore=13.0176;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.268;QD=21.06;ReadPosRankSum=2.346;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3024,351,0 chrXI 501047 . T A 1127 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1160,129,0 chrXI 501319 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.48;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1562,174,0 chrXI 501455 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1983,213,0 chrXI 501710 . A G 3023 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.23;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3056,348,0 chrXI 501830 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.11;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3975,429,0 chrXI 501881 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=3.561;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.000;QD=23.00;ReadPosRankSum=1.650;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3887,444,0 chrXI 501916 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.07;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3922,432,0 chrXI 501970 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=3.371;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.733;QD=23.48;ReadPosRankSum=1.711;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3850,420,0 chrXI 502040 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=170;Dels=0.00;FS=9.908;HaplotypeScore=9.7367;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.734;QD=21.46;ReadPosRankSum=2.959;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3648,420,0 chrXI 502594 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;DP=202;Dels=0.00;FS=9.120;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.853;QD=21.84;ReadPosRankSum=3.417;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:4,198:202:99:4412,489,0 chrXI 502603 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=191;Dels=0.00;FS=6.370;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.279;QD=21.43;ReadPosRankSum=2.411;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4094,459,0 chrXI 502693 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.49;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4320,489,0 chrXI 502906 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.6367;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.547;QD=22.60;ReadPosRankSum=1.711;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3820,426,0 chrXI 503144 . A T 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=142;Dels=0.00;FS=5.553;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.305;QD=21.14;ReadPosRankSum=2.936;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3035,339,0 chrXI 503165 . T C 2826 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.93;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2859,324,0 chrXI 503229 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.22;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3367,375,0 chrXI 503618 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.41;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3272,363,0 chrXI 503668 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.26;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3334,375,0 chrXI 503732 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4216;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.56;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2966,318,0 chrXI 504071 . T C 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=3.639;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.332;QD=19.68;ReadPosRankSum=1.683;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2827,330,0 chrXI 504179 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.3435;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.85;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2742,306,0 chrXI 504362 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.74;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2577,297,0 chrXI 504740 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=3.653;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.689;QD=23.31;ReadPosRankSum=1.645;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3753,423,0 chrXI 504995 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=165;Dels=0.00;FS=3.092;HaplotypeScore=15.3110;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.366;QD=21.87;ReadPosRankSum=1.668;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,160:165:99:3609,411,0 chrXI 505177 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.480;QD=19.97;ReadPosRankSum=1.713;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3575,408,0 chrXI 505187 . C A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.55;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3679,408,0 chrXI 505243 . T C 2762 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.25;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2795,312,0 chrXI 505268 . T C 2859 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.24;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2892,321,0 chrXI 505505 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=4.087;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=1.035;QD=21.21;ReadPosRankSum=1.690;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3479,387,0 chrXI 505526 . G T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.78;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3855,420,0 chrXI 505564 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.14;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3697,411,0 chrXI 505715 . C T 4532.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.68;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4532,498,0 chrXI 505727 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.04;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4348,486,0 chrXI 505895 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.07;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3214,354,0 chrXI 505937 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.74;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2974,327,0 chrXI 506135 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.92;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3301,369,0 chrXI 506252 . G T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.5043;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.85;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4589,498,0 chrXI 506430 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.301;DP=201;Dels=0.00;FS=3.255;HaplotypeScore=8.7093;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.698;QD=20.88;ReadPosRankSum=0.974;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4197,447,0 chrXI 506614 . A G 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=236;Dels=0.00;FS=12.229;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.589;QD=21.57;ReadPosRankSum=3.714;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:5,231:236:99:5090,588,0 chrXI 506729 . A G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-0.632;QD=19.10;ReadPosRankSum=1.677;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2440,273,0 chrXI 506760 . G C 2465 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.992;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=111.0455;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=-1.134;QD=18.96;ReadPosRankSum=2.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2498,294,0 chrXI 506935 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.73;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3248,357,0 chrXI 506978 . C G 3356.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.2838;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.04;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3356,381,0 chrXI 507276 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.83;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2492,270,0 chrXI 507278 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.12;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2387,270,0 chrXI 507364 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.61;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2247,249,0 chrXI 507365 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.02;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2296,246,0 chrXI 507763 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.53;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2627,297,0 chrXI 507764 . T C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=140;Dels=0.00;FS=2.817;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.465;QD=17.94;ReadPosRankSum=2.397;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2545,288,0 chrXI 507899 . C G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.69;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3412,378,0 chrXI 508337 . T C 7544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.591;DP=355;Dels=0.00;FS=4.278;HaplotypeScore=21.6468;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.518;QD=21.25;ReadPosRankSum=3.732;SB=-4.195e+03 GT:AD:DP:GQ:PL 1/1:5,349:355:99:7544,843,0 chrXI 508406 . A G 9059.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=403;Dels=0.00;FS=7.958;HaplotypeScore=18.2847;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.201;QD=22.48;ReadPosRankSum=3.402;SB=-4.044e+03 GT:AD:DP:GQ:PL 1/1:4,399:403:99:9059,1026,0 chrXI 508472 . G A 5777.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5777,630,0 chrXI 508533 . C T 4603.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.9178;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.56;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4603,498,0 chrXI 508894 . T C 4756.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.8989;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.98;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4756,543,0 chrXI 508942 . C T 6411.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.42;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:6411,723,0 chrXI 509070 . C T 4765.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5285;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.71;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4765,513,0 chrXI 509106 . T G 4281.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.2481;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.95;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4281,480,0 chrXI 509190 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.3738;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.28;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4554,516,0 chrXI 509442 . T G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.0201;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.135;QD=21.13;ReadPosRankSum=1.714;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4121,456,0 chrXI 509718 . T A 4484.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.77;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4484,483,0 chrXI 509797 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=197;Dels=0.00;FS=3.055;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.071;QD=16.35;ReadPosRankSum=1.714;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:3255,369,0 chrXI 509825 . C T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.15;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3566,396,0 chrXI 509930 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9359;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.05;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3484,390,0 chrXI 510028 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.0500;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=22.38;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3961,444,0 chrXI 510202 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.2694;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.76;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3194,354,0 chrXI 510698 . T C 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=10.0449;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.425;QD=16.86;ReadPosRankSum=1.855;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2056,237,0 chrXI 510720 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=16.53;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1901,213,0 chrXI 510755 . A T 3080 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.81;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3113,342,0 chrXI 510872 . G T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.96;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3474,381,0 chrXI 510905 . C T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.8848;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.74;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4298,468,0 chrXI 511075 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.420;QD=21.29;ReadPosRankSum=1.680;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4257,471,0 chrXI 511087 . A G 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.088;QD=20.15;ReadPosRankSum=1.700;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4373,501,0 chrXI 511186 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=197;Dels=0.00;FS=8.035;HaplotypeScore=10.7306;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.731;QD=21.20;ReadPosRankSum=3.380;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:4,193:197:99:4176,465,0 chrXI 511303 . T C 3624.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.71;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3624,420,0 chrXI 511327 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.57;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3363,372,0 chrXI 511387 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.64;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,139:144:99:3149,351,0 chrXI 511838 . A T 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.114;QD=18.15;ReadPosRankSum=1.691;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1558,171,0 chrXI 511926 . T A 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.102;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.540;QD=21.02;ReadPosRankSum=1.668;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1168,126,0 chrXI 512082 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.5945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3554,390,0 chrXI 512425 . G C 3995.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3995,465,0 chrXI 512746 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=2.875;HaplotypeScore=7.2729;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.661;QD=22.13;ReadPosRankSum=2.386;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4271,480,0 chrXI 512867 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7866;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.17;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3177,357,0 chrXI 513097 . A G 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.538;QD=22.43;ReadPosRankSum=1.591;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4419,513,0 chrXI 513249 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.0554;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.21;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3887,420,0 chrXI 513425 . C G 1151 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=19.84;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1184,135,0 chrXI 513438 . A T 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=-1.359;QD=18.60;ReadPosRankSum=0.986;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1242,135,0 chrXI 513454 . G C 1320 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=19.70;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1353,156,0 chrXI 513558 . T C 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.626;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.4118;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=-0.337;QD=21.88;ReadPosRankSum=1.444;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1652,180,0 chrXI 513595 . C G 493 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=20.54;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:60:526,60,0 chrXI 513596 . A G 498 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=21.65;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:60:531,60,0 chrXI 513599 . C T 508 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.09;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:60:541,60,0 chrXI 513616 . A G 358 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.694;QD=17.90;ReadPosRankSum=1.561;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:1,19:20:45:391,45,0 chrXI 513619 . G C 325 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.31;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:39:358,39,0 chrXI 513621 . A C 304 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.519;QD=19.00;ReadPosRankSum=1.519;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:1,15:16:39:337,39,0 chrXI 513628 . C G 308 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.40;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:341,39,0 chrXI 513630 . C T 270 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.50;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:303,36,0 chrXI 513654 . G T 326 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.82;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:42:359,42,0 chrXI 513674 . C T 483 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.80;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:516,57,0 chrXI 513762 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=14.89;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1343,147,0 chrXI 514126 . T G 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.3399;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.339;QD=23.22;ReadPosRankSum=1.713;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4296,489,0 chrXI 514315 . G A 4933.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.32;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4933,552,0 chrXI 514627 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=12.62;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:2367,252,0 chrXI 514792 . C T 4737.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=22.14;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4737,525,0 chrXI 514869 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.44;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2838,318,0 chrXI 514920 . A C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.555;QD=18.56;ReadPosRankSum=2.342;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1722,198,0 chrXI 514927 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=18.61;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1671,189,0 chrXI 514948 . T A 2035 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=18.33;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2068,228,0 chrXI 514951 . G C 2007 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=17.45;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2040,234,0 chrXI 514957 . C T 2182 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=17.89;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2215,237,0 chrXI 515018 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.77;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3684,396,0 chrXI 515114 . A G 2571 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.2094;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.55;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2604,306,0 chrXI 515579 . T A 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=219;Dels=0.00;FS=8.460;HaplotypeScore=14.2313;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.533;QD=21.14;ReadPosRankSum=2.382;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4630,513,0 chrXI 515611 . A G 4855.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.79;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4855,552,0 chrXI 515680 . G A 4688.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.5685;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.60;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4688,504,0 chrXI 515689 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.8991;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.85;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4229,471,0 chrXI 515713 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=17.97;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4062,456,0 chrXI 515783 . G A 6265.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.91;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6265,699,0 chrXI 515989 . C T 6077.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=13.9920;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.42;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,268:271:99:6077,672,0 chrXI 516074 . A G 4591.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.2057;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.96;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4591,516,0 chrXI 516142 . A G 5758.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.13;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:5758,677,0 chrXI 516158 . A C 6062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=302;Dels=0.00;FS=4.844;HaplotypeScore=13.0065;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-1.055;QD=20.07;ReadPosRankSum=-0.746;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,301:302:99:6062,660,0 chrXI 516240 . C G 5664.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.13;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,251:256:99:5664,630,0 chrXI 516391 . A T 5180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=22.0572;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.927;QD=20.39;ReadPosRankSum=1.678;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5180,579,0 chrXI 516569 . T A 2418 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.32;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2451,270,0 chrXI 516581 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=131;Dels=0.00;FS=3.179;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.357;QD=19.15;ReadPosRankSum=1.679;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2541,291,0 chrXI 516614 . G C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.34;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3708,411,0 chrXI 517129 . T A 1753 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.47;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1786,198,0 chrXI 517143 . T C 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.049;QD=19.59;ReadPosRankSum=2.371;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:3,79:83:99:1659,183,0 chrXI 517238 . C T 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=71;Dels=0.03;FS=5.166;HaplotypeScore=7.1530;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-1.029;QD=21.87;ReadPosRankSum=1.481;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1586,174,0 chrXI 517456 . G T 97.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=12.16;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:130,15,0 chrXI 517458 . A T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=-1.495;QD=2.13;ReadPosRankSum=1.495;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:2,5:7:6:46,6,0 chrXI 517860 . T G 2683 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=20.80;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2716,303,0 chrXI 517968 . T A 2070 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=21.79;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2103,228,0 chrXI 517983 . A C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=102;Dels=0.00;FS=2.548;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;MQRankSum=1.505;QD=21.64;ReadPosRankSum=2.931;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2240,249,0 chrXI 518139 . T C 573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.357;DP=123;Dels=0.00;FS=1.309;HaplotypeScore=17.7597;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.104;QD=4.66;ReadPosRankSum=3.221;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:15,108:123:81:606,81,0 chrXI 518221 . C T 6058.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.45;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,237:238:99:6058,663,0 chrXI 518577 . G A 7134.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=6.4748;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.29;SB=-4.038e+03 GT:AD:DP:GQ:PL 1/1:0,320:320:99:7134,772,0 chrXI 518593 . G A 6378.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=11.0005;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.44;SB=-3.667e+03 GT:AD:DP:GQ:PL 1/1:0,309:312:99:6378,693,0 chrXI 518633 . T A 6563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=326;Dels=0.00;FS=8.135;HaplotypeScore=27.2751;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.254;QD=20.13;ReadPosRankSum=3.392;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:4,322:326:99:6563,738,0 chrXI 519020 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.63;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3644,396,0 chrXI 519160 . T C 3145 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.30;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3178,375,0 chrXI 519321 . A C 1679 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.23;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1712,195,0 chrXI 519384 . G C 456 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=8.94;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:60:489,60,0 chrXI 519513 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.82;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2157,243,0 chrXI 519538 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.89;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3098,342,0 chrXI 519627 . C A 6134.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=24.54;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6134,652,0 chrXI 519655 . C T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.76;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4621,507,0 chrXI 519728 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.1584;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=18.34;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4145,480,0 chrXI 519796 . T C 5072.01 filter AC=2;AF=1.00;AN=2;DP=407;Dels=0.00;FS=0.000;HaplotypeScore=10.6555;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=12.46;SB=-4.940e+03 GT:AD:DP:GQ:PL 1/1:0,405:407:99:5072,576,0 chrXI 519910 . G A 8553.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=16.7964;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.33;SB=-3.951e+03 GT:AD:DP:GQ:PL 1/1:0,382:383:99:8553,963,0 chrXI 520276 . G A 7662.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=19.8401;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.71;SB=-3.909e+03 GT:AD:DP:GQ:PL 1/1:0,352:353:99:7662,838,0 chrXI 520399 . C T 7699.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=15.8191;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.51;SB=-4.474e+03 GT:AD:DP:GQ:PL 1/1:0,341:342:99:7699,829,0 chrXI 520625 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=18.5095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.86;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3032,333,0 chrXI 520682 . C A 1895 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.05;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1928,216,0 chrXI 521296 . C T 6396.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.92;SB=-3.415e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:6396,699,0 chrXI 521362 . T C 6133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=323;Dels=0.00;FS=10.216;HaplotypeScore=21.8477;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.009;QD=18.99;ReadPosRankSum=2.898;SB=-3.534e+03 GT:AD:DP:GQ:PL 1/1:3,320:323:99:6133,699,0 chrXI 521452 . A G 6417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=348;Dels=0.00;FS=3.023;HaplotypeScore=16.7568;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.273;QD=18.44;ReadPosRankSum=2.336;SB=-4.256e+03 GT:AD:DP:GQ:PL 1/1:2,345:348:99:6417,732,0 chrXI 521476 . T C 6411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=330;Dels=0.00;FS=3.185;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.447;QD=19.43;ReadPosRankSum=1.711;SB=-3.909e+03 GT:AD:DP:GQ:PL 1/1:1,329:330:99:6411,708,0 chrXI 521737 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.37;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3468,384,0 chrXI 521933 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.193;QD=23.27;ReadPosRankSum=2.368;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2872,321,0 chrXI 522077 . A G 5360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.537;DP=252;Dels=0.00;FS=25.489;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.115;QD=21.27;ReadPosRankSum=3.811;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:5,246:252:99:5360,612,0 chrXI 522153 . G A 6264.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6264,676,0 chrXI 522458 . G A 4498.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.73;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4498,492,0 chrXI 522560 . C G 3894.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3894,429,0 chrXI 522668 . A C 3530.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3530,405,0 chrXI 522994 . C A 6376.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.70;SB=-3.613e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6376,682,0 chrXI 523140 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=4.383;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.311;QD=20.83;ReadPosRankSum=1.700;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,213:218:99:4540,507,0 chrXI 523152 . A C 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=225;Dels=0.00;FS=2.564;HaplotypeScore=8.0447;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.746;QD=20.78;ReadPosRankSum=2.862;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:4676,531,0 chrXI 523472 . T A 5277.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=23.04;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5277,582,0 chrXI 523718 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=12.3483;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=14.57;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:3862,411,0 chrXI 524191 . A G 1006 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=16.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1039,123,0 chrXI 524202 . G A 1174 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1207,141,0 chrXI 524346 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=5.923;HaplotypeScore=11.7551;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.984;QD=21.63;ReadPosRankSum=1.712;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3807,447,0 chrXI 524511 . C A 5525.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.84;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5525,627,0 chrXI 524559 . A G 6205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=283;Dels=0.00;FS=3.019;HaplotypeScore=13.8410;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.342;QD=21.93;ReadPosRankSum=0.845;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:2,281:283:99:6205,693,0 chrXI 524673 . G A 5406.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=21.5568;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.54;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5406,588,0 chrXI 524721 . G A 4803.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.14;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:4803,525,0 chrXI 524727 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.03;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4207,483,0 chrXI 524802 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.3422;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.683;QD=18.89;ReadPosRankSum=-0.050;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:3967,427,0 chrXI 524820 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.7080;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.34;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4067,447,0 chrXI 525008 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=23.28;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3794,417,0 chrXI 525178 . G A 1352 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.59;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1385,156,0 chrXI 525234 . A G 912 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=56.6683;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=13.41;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:945,111,0 chrXI 525301 . A G 545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.776;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=22.5882;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;MQRankSum=-0.298;QD=9.91;ReadPosRankSum=3.211;SB=-2.257e+02 GT:AD:DP:GQ:PL 1/1:8,47:55:44:578,44,0 chrXI 525313 . C A 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DP=47;Dels=0.02;FS=32.640;HaplotypeScore=23.4224;MLEAC=1;MLEAF=0.500;MQ=44.70;MQ0=0;MQRankSum=-0.794;QD=1.96;ReadPosRankSum=-3.806;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,16:46:99:122,0,299 chrXI 525316 . T C 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116;DP=45;Dels=0.00;FS=30.403;HaplotypeScore=23.4224;MLEAC=1;MLEAF=0.500;MQ=45.94;MQ0=0;MQRankSum=-1.064;QD=0.64;ReadPosRankSum=-3.819;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,13:45:59:59,0,400 chrXI 525421 . C G 2963 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.52;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2996,357,0 chrXI 525462 . G T 2691 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.61;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2724,297,0 chrXI 525489 . T A 2677 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.50;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2710,297,0 chrXI 525514 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2771;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.83;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2770,309,0 chrXI 525645 . T C 5615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.8424;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.243;QD=21.35;ReadPosRankSum=1.679;SB=-3.276e+03 GT:AD:DP:GQ:PL 1/1:1,261:263:99:5615,630,0 chrXI 526035 . C G 5831.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=15.9022;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.34;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,258:261:99:5831,669,0 chrXI 526209 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.679;DP=210;Dels=0.00;FS=20.920;HaplotypeScore=15.3319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.580;QD=20.77;ReadPosRankSum=3.731;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:5,204:210:99:4362,483,0 chrXI 526649 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3285,363,0 chrXI 526688 . A T 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.760;QD=18.15;ReadPosRankSum=1.648;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3009,339,0 chrXI 527413 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=19.40;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4075,462,0 chrXI 527423 . T C 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=227;Dels=0.00;FS=5.838;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-1.597;QD=18.19;ReadPosRankSum=2.969;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:4129,462,0 chrXI 527432 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=235;Dels=0.00;FS=7.712;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;MQRankSum=-1.593;QD=16.52;ReadPosRankSum=2.418;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:3883,453,0 chrXI 527498 . G C 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;DP=266;Dels=0.00;FS=3.369;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.817;QD=18.68;ReadPosRankSum=0.856;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:1,264:266:99:4970,567,0 chrXI 527511 . A G 5278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=276;Dels=0.00;FS=2.894;HaplotypeScore=6.7660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=1.214;QD=19.12;ReadPosRankSum=2.414;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:2,272:275:99:5278,594,0 chrXI 527534 . G A 5102.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.47;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,259:262:99:5102,576,0 chrXI 527598 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=16.56;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3097,360,0 chrXI 527599 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=17.34;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3277,369,0 chrXI 527629 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=3.917;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;MQRankSum=-0.745;QD=12.31;ReadPosRankSum=1.548;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:2581,306,0 chrXI 527630 . C A 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=3.917;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;MQRankSum=-0.377;QD=13.08;ReadPosRankSum=1.581;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:2754,312,0 chrXI 527758 . G T 4722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.189;DP=208;Dels=0.00;FS=3.602;HaplotypeScore=16.0651;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.255;QD=22.70;ReadPosRankSum=0.934;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,203:208:99:4722,509,0 chrXI 528174 . G A 6353.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=18.3359;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.54;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6353,702,0 chrXI 528213 . G A 6757.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=26.8335;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.45;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,314:315:99:6757,750,0 chrXI 528273 . A G 6326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.890;DP=318;Dels=0.00;FS=19.040;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.012;QD=19.89;ReadPosRankSum=4.103;SB=-3.613e+03 GT:AD:DP:GQ:PL 1/1:6,309:318:99:6326,726,0 chrXI 528277 . A C 6043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=308;Dels=0.00;FS=3.418;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.903;QD=19.62;ReadPosRankSum=1.721;SB=-3.401e+03 GT:AD:DP:GQ:PL 1/1:1,300:308:99:6043,696,0 chrXI 528685 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=16.81;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3008,336,0 chrXI 528686 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=175;Dels=0.00;FS=2.563;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.647;QD=17.22;ReadPosRankSum=2.960;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3047,345,0 chrXI 529150 . C A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.45;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3326,354,0 chrXI 529158 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.76;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3230,345,0 chrXI 529197 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.3701;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.07;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,215:220:99:3975,456,0 chrXI 529548 . C G 4202.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4202,480,0 chrXI 529669 . A G 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=253;Dels=0.00;FS=8.251;HaplotypeScore=17.7422;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.476;QD=20.43;ReadPosRankSum=2.400;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:2,248:253:99:5169,623,0 chrXI 530211 . C T 5015.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.4644;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.11;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5015,558,0 chrXI 530268 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.85;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3933,438,0 chrXI 530289 . T C 4334.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.78;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4334,492,0 chrXI 530499 . C A 2562 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.72;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2595,282,0 chrXI 530607 . G T 1010 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=45.1321;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=17.72;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1043,120,0 chrXI 531524 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.05;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3415,375,0 chrXI 531608 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3930,438,0 chrXI 531920 . C T 4758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.6240;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.680;QD=23.67;ReadPosRankSum=0.629;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4758,531,0 chrXI 532520 . A G 2296 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=16.06;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2329,261,0 chrXI 532628 . C T 4789.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.83;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4789,522,0 chrXI 532742 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.36;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3588,405,0 chrXI 533318 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5964;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.87;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3477,375,0 chrXI 533844 . A T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.06;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3993,447,0 chrXI 533984 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.33;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2759,315,0 chrXI 534234 . T C 6303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.689;QD=23.34;ReadPosRankSum=1.719;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:6303,711,0 chrXI 534309 . C T 5142.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.75;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5142,567,0 chrXI 534319 . A T 4853.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.67;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4853,537,0 chrXI 535346 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.45;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3034,330,0 chrXI 535579 . G T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.67;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3332,375,0 chrXI 535606 . G C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.0845;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.53;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3359,384,0 chrXI 535712 . T C 4933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=232;Dels=0.00;FS=2.849;HaplotypeScore=14.3317;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.145;QD=21.26;ReadPosRankSum=2.375;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:2,228:232:99:4933,555,0 chrXI 536243 . A C 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.3488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.608;QD=21.43;ReadPosRankSum=1.683;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3033,342,0 chrXI 536702 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3363,387,0 chrXI 537096 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2819,306,0 chrXI 537259 . T C 2928 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.1371;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.80;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2961,330,0 chrXI 537420 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.00;FS=6.231;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.911;QD=22.04;ReadPosRankSum=2.383;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3284,381,0 chrXI 537543 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.8988;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.03;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3524,399,0 chrXI 537596 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=145;Dels=0.00;FS=3.802;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.842;QD=22.94;ReadPosRankSum=1.684;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3327,369,0 chrXI 537783 . T C 2429 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.4586;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=18.26;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2462,282,0 chrXI 537837 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.47;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3426,387,0 chrXI 537898 . G C 3827.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.65;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3827,426,0 chrXI 538129 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.5870;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.06;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3044,339,0 chrXI 539073 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5667;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.41;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3344,363,0 chrXI 539120 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.404;DP=117;Dels=0.00;FS=3.485;HaplotypeScore=11.1346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.613;QD=21.85;ReadPosRankSum=-1.374;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2590,288,0 chrXI 539613 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.79;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3347,357,0 chrXI 539661 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.73;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3228,360,0 chrXI 539877 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=148;Dels=0.00;FS=7.051;HaplotypeScore=15.0372;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.756;QD=23.42;ReadPosRankSum=2.383;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3466,387,0 chrXI 539987 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4285,474,0 chrXI 540072 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.99;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3518,408,0 chrXI 540180 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3246,351,0 chrXI 540723 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2604,285,0 chrXI 540879 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=24.34;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3335,369,0 chrXI 541329 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.598;QD=20.90;ReadPosRankSum=0.475;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2436,285,0 chrXI 541941 . G C 2378 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2411,279,0 chrXI 541976 . T C 2420 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2453,276,0 chrXI 542352 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.41;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2074,234,0 chrXI 542388 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2352,252,0 chrXI 542597 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8530;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.29;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2619,297,0 chrXI 542802 . A G 2593 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.95;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2626,303,0 chrXI 542924 . G C 2747 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.2094;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.80;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2780,318,0 chrXI 542955 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.85;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2638,291,0 chrXI 543193 . A G 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.643;QD=18.99;ReadPosRankSum=1.699;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2027,225,0 chrXI 543203 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.14;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2168,237,0 chrXI 543396 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.96;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3018,330,0 chrXI 543951 . T C 2396 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.96;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2429,270,0 chrXI 543990 . T C 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.736;QD=20.09;ReadPosRankSum=2.396;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1881,210,0 chrXI 543993 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.53;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1927,213,0 chrXI 544599 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.73;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3032,348,0 chrXI 544959 . T C 2648 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2681,303,0 chrXI 545292 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.46;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3036,336,0 chrXI 545405 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=119;Dels=0.00;FS=3.241;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.000;QD=22.73;ReadPosRankSum=1.672;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,115:119:99:2738,306,0 chrXI 545416 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.88;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2504,270,0 chrXI 545874 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.80;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3594,396,0 chrXI 545963 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.685;DP=153;Dels=0.00;FS=8.039;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.754;QD=23.16;ReadPosRankSum=3.738;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:5,146:153:99:3543,393,0 chrXI 546444 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.91;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2998,336,0 chrXI 546534 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=3.388;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.536;QD=22.24;ReadPosRankSum=1.691;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3759,420,0 chrXI 546552 . G T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.24;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3692,411,0 chrXI 546863 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2742,306,0 chrXI 546903 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2643,297,0 chrXI 546964 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.596;QD=20.87;ReadPosRankSum=1.705;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2684,294,0 chrXI 547133 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2308,255,0 chrXI 547337 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.569;QD=23.18;ReadPosRankSum=2.400;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3454,387,0 chrXI 547817 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=125;Dels=0.00;FS=9.473;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.271;QD=21.70;ReadPosRankSum=2.370;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2745,315,0 chrXI 548010 . T G 4895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.5015;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.002;QD=24.00;ReadPosRankSum=1.681;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4895,543,0 chrXI 548064 . C T 4935.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=23.3705;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.55;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4935,555,0 chrXI 548175 . A G 4843.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.8901;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.95;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4843,537,0 chrXI 548301 . A C 5149.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.5721;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.63;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5149,573,0 chrXI 548319 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.2191;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.84;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4606,493,0 chrXI 548560 . A G 4091.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.2291;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.51;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4091,456,0 chrXI 548668 . C T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.21;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3729,408,0 chrXI 548697 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=157;Dels=0.00;FS=3.634;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.695;QD=20.94;ReadPosRankSum=1.710;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3287,366,0 chrXI 548704 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.48;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3044,345,0 chrXI 548884 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.30;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2973,339,0 chrXI 549098 . T A 2138 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.49;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2171,234,0 chrXI 549235 . T G 1843 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.63;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1876,216,0 chrXI 549262 . T A 1941 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=24.26;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1974,219,0 chrXI 549266 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=24.00;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1905,210,0 chrXI 549422 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.44;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2241,246,0 chrXI 549438 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.43;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2305,258,0 chrXI 549464 . A C 1849 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=78.2872;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=19.06;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1882,210,0 chrXI 549543 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.12;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2992,321,0 chrXI 549575 . C T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.78;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3403,360,0 chrXI 549606 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.083;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0242;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.450;QD=22.18;ReadPosRankSum=1.826;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3005,317,0 chrXI 549752 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.80;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2823,312,0 chrXI 549990 . C A 2982 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3015,324,0 chrXI 550068 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=7.056;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.904;QD=22.15;ReadPosRankSum=2.345;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2115,240,0 chrXI 550227 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.250;QD=21.37;ReadPosRankSum=1.702;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2491,288,0 chrXI 550278 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.33;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2721,303,0 chrXI 550329 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.44;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3343,384,0 chrXI 550377 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.53;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3139,348,0 chrXI 550408 . T A 2795 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.10;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2828,303,0 chrXI 551284 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9499;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.29;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2641,300,0 chrXI 551392 . T C 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=103;Dels=0.00;FS=7.248;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.016;QD=21.13;ReadPosRankSum=2.354;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2209,255,0 chrXI 551512 . G T 2270 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.40;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2303,249,0 chrXI 551750 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=24.08;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3467,393,0 chrXI 551893 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.76;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2622,288,0 chrXI 552248 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.511;QD=20.88;ReadPosRankSum=2.963;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:3,188:191:99:3988,450,0 chrXI 552591 . C A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3698,405,0 chrXI 552756 . C G 4219.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.56;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4219,471,0 chrXI 552927 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2952;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=22.68;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3743,399,0 chrXI 552941 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=22.23;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3624,390,0 chrXI 552953 . A C 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.317;QD=21.02;ReadPosRankSum=2.357;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3363,378,0 chrXI 552998 . A G 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.052;QD=19.93;ReadPosRankSum=1.706;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2704,300,0 chrXI 553084 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9835;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.689;QD=22.31;ReadPosRankSum=1.667;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3569,417,0 chrXI 553096 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.554;QD=23.78;ReadPosRankSum=1.661;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3496,384,0 chrXI 553304 . T A 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=155;Dels=0.00;FS=8.813;HaplotypeScore=15.9299;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.755;QD=21.12;ReadPosRankSum=2.861;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3273,360,0 chrXI 553697 . G T 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DP=211;Dels=0.00;FS=3.179;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.561;QD=23.84;ReadPosRankSum=1.716;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5030,542,0 chrXI 553952 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=5.006;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.664;QD=24.90;ReadPosRankSum=1.654;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3336,372,0 chrXI 553992 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=2.773;HaplotypeScore=8.0113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.178;QD=23.19;ReadPosRankSum=2.375;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3094,351,0 chrXI 554156 . C G 2909 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=20.20;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2942,324,0 chrXI 554158 . A G 2747 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.390;QD=19.35;ReadPosRankSum=1.708;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2780,321,0 chrXI 554163 . G A 2842 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=20.01;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2875,306,0 chrXI 554227 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=137;Dels=0.00;FS=3.242;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.962;QD=22.02;ReadPosRankSum=1.706;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3050,339,0 chrXI 554305 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.22;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3206,348,0 chrXI 555214 . T C 1786 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.142;DP=158;Dels=0.00;FS=66.962;HaplotypeScore=8.9891;MLEAC=2;MLEAF=1.00;MQ=23.57;MQ0=51;MQRankSum=1.053;QD=11.30;ReadPosRankSum=3.374;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,153:158:99:1819,201,0 chrXI 556090 . C T 1170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.434;DP=142;Dels=0.00;FS=79.929;HaplotypeScore=16.6782;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=8;MQRankSum=5.055;QD=8.24;ReadPosRankSum=-1.825;SB=-6.030e+02 GT:AD:DP:GQ:PL 0/1:57,85:142:99:1200,0,341 chrXI 556475 . A T 890 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=16.18;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:923,102,0 chrXI 556484 . A G 957 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=16.79;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:990,108,0 chrXI 556642 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=25.48;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2606,285,0 chrXI 556863 . A G 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.350;QD=24.25;ReadPosRankSum=1.705;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3113,348,0 chrXI 556988 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.01;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3247,363,0 chrXI 557093 . T C 2654 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.75;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2687,306,0 chrXI 557196 . A G 2163 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.85;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2196,246,0 chrXI 557299 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.71;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2009,219,0 chrXI 558102 . C G 2448 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.40;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2481,291,0 chrXI 558496 . A G 2773 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.66;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2806,315,0 chrXI 558521 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.74;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2659,288,0 chrXI 558543 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.62;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2453,279,0 chrXI 558621 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1244;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.58;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3059,339,0 chrXI 558670 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.732;QD=21.72;ReadPosRankSum=1.706;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2922,327,0 chrXI 558690 . T C 2994 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.37;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3027,345,0 chrXI 559170 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.96;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2213,240,0 chrXI 559244 . A C 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=4.150;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.542;QD=22.83;ReadPosRankSum=1.694;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:2156,243,0 chrXI 559385 . T G 2300 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.47;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2333,261,0 chrXI 559575 . G T 2881 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.42;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2914,312,0 chrXI 559595 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.23;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2821,306,0 chrXI 559707 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.552;QD=22.88;ReadPosRankSum=1.657;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3214,360,0 chrXI 560658 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.22;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3584,399,0 chrXI 560728 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.81;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3547,378,0 chrXI 560783 . A G 3036 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3069,342,0 chrXI 561220 . T G 1407 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.07;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1440,159,0 chrXI 561638 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2864,315,0 chrXI 561779 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.5990;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=6.65;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:1329,147,0 chrXI 561959 . G A 5815.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=13.3123;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.23;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5815,648,0 chrXI 562081 . C T 4783.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=20.4397;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.56;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4783,522,0 chrXI 562201 . T G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=177;Dels=0.00;FS=6.563;HaplotypeScore=17.2753;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.586;QD=18.99;ReadPosRankSum=2.393;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,172:177:99:3362,384,0 chrXI 562378 . C G 4242.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.33;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4242,480,0 chrXI 562470 . G T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.5152;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.62;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3687,402,0 chrXI 562712 . C A 3161 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3194,351,0 chrXI 562768 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=14.1903;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.02;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2724,306,0 chrXI 562948 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.88;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2944,324,0 chrXI 563008 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3727,414,0 chrXI 563181 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6729;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.54;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3607,387,0 chrXI 563339 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=25.06;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2790,303,0 chrXI 563365 . T C 2412 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.97;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2445,276,0 chrXI 563390 . G A 2141 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=22.30;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2174,234,0 chrXI 563395 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.92;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1979,222,0 chrXI 563539 . T A 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.666;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.372;QD=24.42;ReadPosRankSum=0.437;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2646,288,0 chrXI 563812 . T C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=122;Dels=0.00;FS=3.155;HaplotypeScore=8.1354;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.675;QD=20.80;ReadPosRankSum=1.704;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2570,294,0 chrXI 564055 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.34;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2781,312,0 chrXI 564676 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.76;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1968,216,0 chrXI 564715 . T G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=76;Dels=0.00;FS=3.069;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.661;QD=21.96;ReadPosRankSum=2.384;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1702,189,0 chrXI 565014 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.358;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.499;QD=22.56;ReadPosRankSum=1.599;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2402,267,0 chrXI 565093 . G A 2149 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.93;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2182,243,0 chrXI 565671 . A G 4628.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.80;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4628,522,0 chrXI 565988 . T A 1386 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1419,159,0 chrXI 566023 . G A 861 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:894,99,0 chrXI 566185 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5555;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.46;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2121,237,0 chrXI 566212 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.93;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1638,183,0 chrXI 566530 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=212;Dels=0.00;FS=8.923;HaplotypeScore=13.6763;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.753;QD=20.81;ReadPosRankSum=3.370;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:4,208:212:99:4412,510,0 chrXI 566551 . T C 4618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.236;QD=20.99;ReadPosRankSum=1.716;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4618,516,0 chrXI 566653 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.9389;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.66;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4277,477,0 chrXI 566686 . C T 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.2932;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.652;QD=21.37;ReadPosRankSum=1.508;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4616,510,0 chrXI 567055 . G A 5230.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.0243;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.66;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5230,579,0 chrXI 567076 . T G 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=248;Dels=0.00;FS=3.763;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.445;QD=19.42;ReadPosRankSum=1.718;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,244:248:99:4815,543,0 chrXI 567430 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.61;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3778,405,0 chrXI 567495 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3601,393,0 chrXI 567597 . G C 2740 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.45;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:2773,318,0 chrXI 567598 . T G 2750 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=17.63;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2783,321,0 chrXI 567633 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.68;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:2738,309,0 chrXI 567960 . C G 3366.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.04;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,154:160:99:3366,384,0 chrXI 568028 . A G 2753 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=18.48;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2786,321,0 chrXI 568041 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.53;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2806,315,0 chrXI 568283 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=4.052;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.201;QD=21.74;ReadPosRankSum=1.709;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3283,375,0 chrXI 568316 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=7.237;HaplotypeScore=9.7713;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.737;QD=21.21;ReadPosRankSum=2.420;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3499,399,0 chrXI 568347 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.50;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3420,372,0 chrXI 568472 . C T 2465 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.1666;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.71;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2498,273,0 chrXI 568502 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.10;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2972,342,0 chrXI 568685 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=154;Dels=0.00;FS=5.526;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.704;QD=22.94;ReadPosRankSum=2.888;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3532,399,0 chrXI 568908 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1154;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.76;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3823,423,0 chrXI 569085 . T C 2712 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2745,309,0 chrXI 569468 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.68;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3153,348,0 chrXI 569471 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.18;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3121,339,0 chrXI 569606 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.74;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2664,300,0 chrXI 569673 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.28;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3129,348,0 chrXI 569747 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.577;QD=24.53;ReadPosRankSum=1.682;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3385,381,0 chrXI 569825 . T G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=121;Dels=0.00;FS=5.590;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.542;QD=21.27;ReadPosRankSum=2.942;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2607,306,0 chrXI 570049 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1521;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.14;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1870,204,0 chrXI 570688 . T C 2863 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.02;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2896,333,0 chrXI 570835 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.509;QD=21.37;ReadPosRankSum=1.707;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3004,342,0 chrXI 570916 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=17.15;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2365,252,0 chrXI 570918 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=16.65;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2281,252,0 chrXI 570938 . C T 1346 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=11.91;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1379,156,0 chrXI 570942 . T C 1222 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=3.020;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;MQRankSum=-0.196;QD=11.42;ReadPosRankSum=2.381;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1255,147,0 chrXI 570944 . A G 1135 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=11.02;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1168,132,0 chrXI 571008 . T C 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=3.763;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;MQRankSum=1.181;QD=15.85;ReadPosRankSum=1.693;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1428,165,0 chrXI 571029 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=0;QD=17.78;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1331,162,0 chrXI 571035 . C A 1418 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=19.42;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1451,165,0 chrXI 571051 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=19.27;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1517,177,0 chrXI 571067 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=20.70;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1751,195,0 chrXI 571088 . T C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=5.936;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;MQRankSum=-0.068;QD=20.36;ReadPosRankSum=1.698;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2110,234,0 chrXI 571139 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=22.30;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2486,276,0 chrXI 571164 . G T 2244 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=22.22;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2277,252,0 chrXI 571208 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=15.66;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1646,186,0 chrXI 571219 . A G 1144 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=12.57;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1177,141,0 chrXI 571243 . T A 925 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=11.56;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:958,108,0 chrXI 571248 . T A 614 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=0;QD=9.03;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:78:647,78,0 chrXI 571256 . T A 439 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=7.84;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:57:472,57,0 chrXI 571259 . T G 424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;MQRankSum=-1.732;QD=7.71;ReadPosRankSum=1.669;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:54:457,54,0 chrXI 571283 . A T 435 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=9.67;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:468,51,0 chrXI 571301 . G T 737 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=15.35;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:770,87,0 chrXI 571323 . C T 911 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=15.71;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:944,102,0 chrXI 571329 . A G 927 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=16.85;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:960,108,0 chrXI 571639 . T C 2504 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.79;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2537,282,0 chrXI 571872 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.33;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3355,390,0 chrXI 572586 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.21;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2089,240,0 chrXI 572589 . G A 2079 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.25;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2112,228,0 chrXI 572601 . A G 2240 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.55;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2273,258,0 chrXI 573116 . G A 5265.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.89;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5265,565,0 chrXI 573289 . G C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.47;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,154:161:99:3295,366,0 chrXI 573370 . G T 2689 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7986;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.01;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2722,297,0 chrXI 573386 . T A 2022 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.90;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2055,234,0 chrXI 573395 . A T 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=5.396;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.054;QD=19.44;ReadPosRankSum=1.625;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1919,213,0 chrXI 573465 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=20.02;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2355,264,0 chrXI 573485 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=18.25;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2296,258,0 chrXI 573486 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=18.87;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2373,258,0 chrXI 573513 . G C 1989 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=14.95;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2022,234,0 chrXI 573530 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=14.97;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2174,249,0 chrXI 574134 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.28;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3873,420,0 chrXI 574194 . A G 4399.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4399,495,0 chrXI 574788 . T C 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.425;QD=21.82;ReadPosRankSum=1.699;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2346,264,0 chrXI 574796 . T G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=2.913;HaplotypeScore=87.3348;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-2.351;QD=20.43;ReadPosRankSum=2.401;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2076,231,0 chrXI 574927 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=17.4361;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.03;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3823,432,0 chrXI 575132 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.706;DP=178;Dels=0.00;FS=8.002;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.352;QD=19.62;ReadPosRankSum=3.794;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:5,173:178:99:3492,390,0 chrXI 575153 . A T 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=3.037;HaplotypeScore=5.9446;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.443;QD=20.50;ReadPosRankSum=2.316;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3424,372,0 chrXI 575248 . A C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3714,414,0 chrXI 575327 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.69;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3679,390,0 chrXI 575413 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.13;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3452,384,0 chrXI 575843 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.78;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3417,393,0 chrXI 575852 . A G 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=142;Dels=0.00;FS=12.506;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.291;QD=22.04;ReadPosRankSum=2.922;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3163,360,0 chrXI 576209 . A G 891 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.21;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:924,108,0 chrXI 576492 . A G 2007 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.268;DP=200;Dels=0.04;FS=1.283;HaplotypeScore=86.8451;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=0.450;QD=10.03;ReadPosRankSum=-2.439;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:18,175:193:99:2040,207,0 chrXI 576495 . G A 1977 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.007;DP=202;Dels=0.03;FS=0.000;HaplotypeScore=73.3893;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=0.069;QD=9.79;ReadPosRankSum=-2.774;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:15,180:195:99:2010,218,0 chrXI 576498 . G A 1790 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.565;DP=205;Dels=0.00;FS=10.521;HaplotypeScore=72.1664;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-1.466;QD=8.73;ReadPosRankSum=-1.849;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:22,182:205:99:1823,193,0 chrXI 576522 . G A 1158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.951;DP=203;Dels=0.00;FS=7.374;HaplotypeScore=15.8177;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=-1.962;QD=5.70;ReadPosRankSum=4.396;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:20,183:203:99:1191,135,0 chrXI 576947 . A G 4966.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.22;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4966,558,0 chrXI 577440 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3455,402,0 chrXI 577769 . T C 2751 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.1656;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.84;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2784,312,0 chrXI 577779 . G T 2807 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.19;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2840,312,0 chrXI 578230 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=26.36;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3743,405,0 chrXI 578487 . A T 1143 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.361;DP=119;Dels=0.00;FS=283.425;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;MQRankSum=3.820;QD=9.61;ReadPosRankSum=-7.573;SB=-6.574e-03 GT:AD:DP:GQ:PL 1/1:61,58:119:52:1176,52,0 chrXI 578669 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=20.17;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2574,291,0 chrXI 578685 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=19.17;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2775,327,0 chrXI 578688 . T C 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-1.542;QD=18.58;ReadPosRankSum=1.708;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2746,326,0 chrXI 578716 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=18.60;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3102,357,0 chrXI 578770 . G T 2928 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.05;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2961,321,0 chrXI 578804 . G C 2993 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.93;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3026,336,0 chrXI 578824 . T C 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.099;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-1.430;QD=19.58;ReadPosRankSum=1.709;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2970,342,0 chrXI 578904 . G C 2867 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.12;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2900,318,0 chrXI 578942 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=12.4105;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.28;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2057,234,0 chrXI 579093 . T C 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=98;Dels=0.00;FS=4.186;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.946;QD=19.19;ReadPosRankSum=1.696;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1914,219,0 chrXI 579153 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=4.040;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.351;QD=23.52;ReadPosRankSum=1.700;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2597,285,0 chrXI 579541 . T C 1657 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=16.91;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1690,198,0 chrXI 579788 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=19.77;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1061,117,0 chrXI 579792 . T C 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=-0.898;QD=19.06;ReadPosRankSum=1.668;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1062,120,0 chrXI 580030 . T C 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=125;Dels=0.00;FS=9.247;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.041;QD=18.89;ReadPosRankSum=2.894;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:3,120:125:99:2394,267,0 chrXI 580043 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=18.23;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2476,276,0 chrXI 580052 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.2896;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.83;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2669,294,0 chrXI 580181 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.7819;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.81;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3924,432,0 chrXI 580299 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.3470;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.25;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3849,435,0 chrXI 580625 . T C 5514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=4.005;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.050;QD=21.21;ReadPosRankSum=1.692;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:5514,627,0 chrXI 580782 . G T 2710 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4181;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.17;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2743,315,0 chrXI 580815 . A G 2312 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.234;QD=20.83;ReadPosRankSum=1.701;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2345,261,0 chrXI 581030 . A T 850 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:99:883,99,0 chrXI 581058 . A G 752 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:87:785,87,0 chrXI 581163 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.66;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1246,144,0 chrXI 581198 . A C 1202 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.21;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1235,141,0 chrXI 581200 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.67;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1252,141,0 chrXI 581385 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.01;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3070,339,0 chrXI 581481 . G T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=132.4116;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.33;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3429,375,0 chrXI 581512 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.061;QD=18.01;ReadPosRankSum=1.708;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2608,300,0 chrXI 581534 . G T 2678 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.74;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:2711,309,0 chrXI 581566 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=2.916;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.527;QD=18.88;ReadPosRankSum=2.373;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3073,345,0 chrXI 581590 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.56;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3768,420,0 chrXI 581619 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=23.48;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4038,432,0 chrXI 581803 . T G 2260 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=20.18;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2293,267,0 chrXI 581827 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=19.31;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2022,228,0 chrXI 581851 . A G 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=2.989;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;MQRankSum=-1.495;QD=16.01;ReadPosRankSum=2.400;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1602,183,0 chrXI 581871 . T C 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=93;Dels=0.00;FS=9.612;HaplotypeScore=9.3376;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;MQRankSum=-2.120;QD=12.76;ReadPosRankSum=2.859;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1220,138,0 chrXI 581872 . T A 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.02;FS=3.303;HaplotypeScore=10.1263;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=-1.243;QD=12.56;ReadPosRankSum=1.694;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1214,135,0 chrXI 581924 . C A 1160 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=11.84;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1193,129,0 chrXI 581940 . C T 1399 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=13.99;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1432,156,0 chrXI 581941 . A T 1435 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=14.21;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1468,162,0 chrXI 581974 . T C 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=109;Dels=0.01;FS=8.952;HaplotypeScore=6.5415;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.041;QD=16.28;ReadPosRankSum=3.327;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:4,104:108:99:1808,201,0 chrXI 582019 . C A 1928 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.36;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1961,216,0 chrXI 582036 . T C 2234 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.95;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2267,255,0 chrXI 582207 . A G 4320.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7928;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.13;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4320,483,0 chrXI 582256 . C T 4771.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.72;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4771,513,0 chrXI 582300 . G C 4527.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.9686;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.98;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4527,513,0 chrXI 582336 . G A 5235.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.5215;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.66;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5235,576,0 chrXI 582583 . G T 5162.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.6531;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.90;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5162,564,0 chrXI 582622 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=203;Dels=0.00;FS=3.028;HaplotypeScore=12.8631;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.176;QD=21.75;ReadPosRankSum=2.389;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4416,513,0 chrXI 582756 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4719,507,0 chrXI 582855 . C G 4431.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=23.20;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4431,489,0 chrXI 582912 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8918;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.52;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4493,483,0 chrXI 582939 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3364;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.12;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4180,468,0 chrXI 583085 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.377;QD=20.92;ReadPosRankSum=2.302;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3472,381,0 chrXI 583102 . G A 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.411;DP=151;Dels=0.00;FS=5.069;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-0.447;QD=20.72;ReadPosRankSum=0.470;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3162,323,0 chrXI 583125 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=8.962;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-0.449;QD=18.45;ReadPosRankSum=2.382;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2708,303,0 chrXI 583147 . A C 2769 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.6173;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=16.68;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:2802,327,0 chrXI 583405 . A T 2001 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.29;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2034,222,0 chrXI 583614 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.58;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2533,276,0 chrXI 583946 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3225,354,0 chrXI 584258 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=24.18;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4643,522,0 chrXI 584345 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.63;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3308,375,0 chrXI 584438 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.51;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3425,384,0 chrXI 584769 . A T 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.784;QD=24.78;ReadPosRankSum=1.696;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2387,255,0 chrXI 584818 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.77;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2123,243,0 chrXI 584944 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.07;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3911,420,0 chrXI 585008 . C T 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=1.004;QD=21.90;ReadPosRankSum=-0.335;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2639,276,0 chrXI 585032 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.46;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3010,333,0 chrXI 585038 . C A 3052 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=18.50;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3085,342,0 chrXI 585048 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.29;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3366,375,0 chrXI 585183 . C T 2502 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.38;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2535,273,0 chrXI 585338 . T C 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.821;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.516;QD=20.71;ReadPosRankSum=1.695;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2000,222,0 chrXI 585479 . A G 2174 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.13;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2207,261,0 chrXI 585500 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.50;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2549,279,0 chrXI 585840 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.77;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3062,339,0 chrXI 585929 . C A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.29;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3499,381,0 chrXI 585937 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.202;QD=21.26;ReadPosRankSum=1.690;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3466,390,0 chrXI 586172 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.68;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3651,396,0 chrXI 586293 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.41;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2410,267,0 chrXI 586298 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.69;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2202,237,0 chrXI 586352 . C G 2000 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.52;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2033,231,0 chrXI 586366 . T C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=119;Dels=0.00;FS=2.587;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.670;QD=18.55;ReadPosRankSum=2.924;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2240,258,0 chrXI 586587 . A G 2567 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.57;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2600,300,0 chrXI 586747 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.66;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2659,288,0 chrXI 586783 . A T 2677 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.08;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2710,297,0 chrXI 587530 . T C 2942 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2975,336,0 chrXI 587779 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.88;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3340,387,0 chrXI 587935 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3375,369,0 chrXI 588016 . T G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.027;QD=21.70;ReadPosRankSum=1.705;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2854,336,0 chrXI 588209 . G T 2999 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1721;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=21.89;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3032,339,0 chrXI 588593 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.410;QD=22.73;ReadPosRankSum=1.652;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3909,438,0 chrXI 588621 . C T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.55;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4003,429,0 chrXI 588724 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.50;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3619,405,0 chrXI 588805 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.30;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3185,360,0 chrXI 588930 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=165;Dels=0.00;FS=9.523;HaplotypeScore=10.9863;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.488;QD=23.15;ReadPosRankSum=2.945;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:3819,429,0 chrXI 589078 . A G 3172 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.73;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3205,375,0 chrXI 589432 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2534;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.72;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3680,408,0 chrXI 589534 . G C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8643;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.65;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3377,381,0 chrXI 589750 . T A 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=142;Dels=0.01;FS=7.698;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.501;QD=24.85;ReadPosRankSum=2.415;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3529,384,0 chrXI 589814 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5211;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.60;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3082,336,0 chrXI 589828 . T C 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=153;Dels=0.00;FS=3.661;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.103;QD=19.95;ReadPosRankSum=1.709;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3085,348,0 chrXI 589939 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.122;QD=22.81;ReadPosRankSum=1.671;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2633,306,0 chrXI 589969 . T A 2535 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.14;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2568,282,0 chrXI 590023 . C T 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=101;Dels=0.00;FS=4.361;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.737;QD=23.31;ReadPosRankSum=0.189;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2387,255,0 chrXI 590067 . T G 2042 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.84;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2075,243,0 chrXI 590307 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.07;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2871,312,0 chrXI 590322 . A G 2715 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7735;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.72;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2748,303,0 chrXI 590742 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.23;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4180,453,0 chrXI 590760 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.35;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3993,432,0 chrXI 590994 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.80;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3088,339,0 chrXI 592478 . A G 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=196;Dels=0.00;FS=2.854;HaplotypeScore=11.9124;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.382;QD=21.08;ReadPosRankSum=2.425;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4132,468,0 chrXI 592577 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=189;Dels=0.00;FS=2.635;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.300;QD=20.88;ReadPosRankSum=2.371;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:3947,441,0 chrXI 593181 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.069;HaplotypeScore=10.0550;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.416;QD=23.39;ReadPosRankSum=1.663;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3508,399,0 chrXI 594179 . A T 2652 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.29;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2685,285,0 chrXI 594186 . T G 2426 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.10;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2459,276,0 chrXI 594303 . T C 2649 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.07;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2682,318,0 chrXI 594718 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.41;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2431,276,0 chrXI 594744 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.54;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2355,258,0 chrXI 594807 . A G 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.225;QD=22.64;ReadPosRankSum=1.676;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2818,315,0 chrXI 594957 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.9061;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.76;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2171,234,0 chrXI 594987 . T C 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.840;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.941;QD=21.83;ReadPosRankSum=1.657;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2063,228,0 chrXI 595260 . T G 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=112;Dels=0.00;FS=2.960;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.143;QD=17.82;ReadPosRankSum=2.252;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2029,237,0 chrXI 595278 . A G 2357 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.32;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2390,270,0 chrXI 595509 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.16;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3222,354,0 chrXI 596220 . G T 1529 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1562,168,0 chrXI 596556 . C G 2464 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.24;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2497,291,0 chrXI 596684 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3440,372,0 chrXI 596823 . A G 2303 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.32;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2336,264,0 chrXI 596880 . C G 2508 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2541,291,0 chrXI 596991 . G T 1925 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1958,216,0 chrXI 597032 . T C 1998 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2031,228,0 chrXI 597106 . T C 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.356;QD=21.79;ReadPosRankSum=2.409;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2670,303,0 chrXI 597150 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=4.926;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.787;QD=22.22;ReadPosRankSum=1.684;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3232,360,0 chrXI 597223 . A G 4444.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9446;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.27;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4444,510,0 chrXI 597399 . A G 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=212;Dels=0.00;FS=2.955;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.094;QD=22.13;ReadPosRankSum=2.357;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4691,528,0 chrXI 597543 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=199;Dels=0.00;FS=4.494;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.431;QD=21.06;ReadPosRankSum=1.697;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4191,465,0 chrXI 597866 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=7.379;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.361;QD=21.13;ReadPosRankSum=2.417;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3181,354,0 chrXI 597889 . T G 3185 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.0027;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.67;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3218,357,0 chrXI 598496 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=187;Dels=0.00;FS=2.968;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.438;QD=19.61;ReadPosRankSum=2.371;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3667,414,0 chrXI 598795 . A T 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=176;Dels=0.00;FS=14.555;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.263;QD=24.30;ReadPosRankSum=3.410;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:4277,462,0 chrXI 598922 . C G 2945 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.52;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2978,342,0 chrXI 599337 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=182;Dels=0.00;FS=2.891;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.468;QD=23.29;ReadPosRankSum=2.327;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4239,474,0 chrXI 599535 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.8548;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.607;QD=22.47;ReadPosRankSum=2.395;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4045,462,0 chrXI 599900 . A G 2519 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.11;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2552,282,0 chrXI 599979 . A G 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.461;QD=20.47;ReadPosRankSum=1.700;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2305,261,0 chrXI 600024 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.85;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2370,270,0 chrXI 600033 . A G 2208 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=17.95;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2241,258,0 chrXI 600075 . T C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=3.046;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.469;QD=18.81;ReadPosRankSum=2.408;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2290,270,0 chrXI 600099 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.02;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2536,279,0 chrXI 600144 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.29;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2907,312,0 chrXI 600159 . T C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.7459;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-1.025;QD=17.89;ReadPosRankSum=2.418;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2842,324,0 chrXI 600363 . G A 5060.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.6623;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.00;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5060,549,0 chrXI 600406 . T G 5070.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=19.0513;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.13;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5070,582,0 chrXI 600456 . T A 5440.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.2330;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.30;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5440,597,0 chrXI 600536 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=225;Dels=0.00;FS=2.930;HaplotypeScore=22.6252;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.433;QD=20.33;ReadPosRankSum=2.428;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:4574,516,0 chrXI 601065 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=210;Dels=0.00;FS=6.555;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.304;QD=20.96;ReadPosRankSum=2.403;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4401,513,0 chrXI 601089 . A G 4525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=235;Dels=0.00;FS=4.253;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.192;QD=19.26;ReadPosRankSum=2.829;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:5,227:235:99:4525,495,0 chrXI 601260 . G C 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.010;QD=22.99;ReadPosRankSum=1.694;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4230,471,0 chrXI 602166 . T G 3074 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.40;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3107,345,0 chrXI 602763 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.201;DP=189;Dels=0.00;FS=5.221;HaplotypeScore=14.3857;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.115;QD=22.80;ReadPosRankSum=3.321;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:4310,495,0 chrXI 602859 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=6.658;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-2.163;QD=22.80;ReadPosRankSum=2.329;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3717,432,0 chrXI 603048 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.92;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2554,291,0 chrXI 604059 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3506,393,0 chrXI 604356 . A G 2708 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2741,312,0 chrXI 604404 . A T 2628 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2661,297,0 chrXI 605465 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=131;Dels=0.00;FS=2.985;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.554;QD=21.73;ReadPosRankSum=2.392;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2879,330,0 chrXI 605622 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3660,396,0 chrXI 606158 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0500;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.34;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3525,393,0 chrXI 606185 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.02;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4074,456,0 chrXI 606370 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;DP=149;Dels=0.00;FS=3.407;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.709;QD=23.54;ReadPosRankSum=-0.198;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3508,357,0 chrXI 606560 . T C 2533 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.65;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2566,300,0 chrXI 606671 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9243;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.454;QD=23.97;ReadPosRankSum=1.656;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3308,372,0 chrXI 606902 . T C 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9795;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=1.052;QD=19.76;ReadPosRankSum=1.710;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3195,366,0 chrXI 606908 . A G 3209 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.22;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3242,369,0 chrXI 608039 . A G 3871.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.7770;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.92;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3871,456,0 chrXI 608132 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.3230;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.046;QD=22.41;ReadPosRankSum=1.714;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4326,477,0 chrXI 608185 . C G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.5847;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.98;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3797,429,0 chrXI 608249 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.6065;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.03;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3545,405,0 chrXI 608415 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.81;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2476,276,0 chrXI 608429 . T C 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=4.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.091;QD=20.17;ReadPosRankSum=1.700;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2252,252,0 chrXI 608474 . T A 2291 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.93;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2324,255,0 chrXI 608546 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.50;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1944,213,0 chrXI 608568 . T A 1507 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.64;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1540,171,0 chrXI 608639 . A G 725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.979;QD=15.76;ReadPosRankSum=1.657;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:87:758,87,0 chrXI 608676 . T C 920 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.44;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:953,105,0 chrXI 608840 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1270,138,0 chrXI 608978 . T C 2716 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.92;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2749,312,0 chrXI 609095 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.52;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3336,366,0 chrXI 609137 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.46;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3724,408,0 chrXI 609152 . G A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.08;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3815,423,0 chrXI 609420 . A G 5584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=267;Dels=0.00;FS=3.007;HaplotypeScore=18.7942;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=2.136;QD=20.91;ReadPosRankSum=2.422;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:5584,639,0 chrXI 609738 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=174;Dels=0.00;FS=5.145;HaplotypeScore=13.4806;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.197;QD=22.14;ReadPosRankSum=3.409;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:4,169:174:99:3852,432,0 chrXI 610232 . A T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.6867;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.27;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4520,498,0 chrXI 610502 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=166;Dels=0.00;FS=6.650;HaplotypeScore=14.3150;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=2.316;QD=21.82;ReadPosRankSum=2.390;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3622,414,0 chrXI 611187 . C G 3188 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.1263;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.94;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3221,363,0 chrXI 611219 . T C 3160 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3193,351,0 chrXI 612138 . G A 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.536;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.7737;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.055;QD=17.35;ReadPosRankSum=2.328;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3225,331,0 chrXI 612141 . T G 3112 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=6.4076;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=17.99;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3145,357,0 chrXI 612496 . T C 701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.418;QD=21.24;ReadPosRankSum=1.628;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:81:734,81,0 chrXI 612508 . A G 812 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.56;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:93:845,93,0 chrXI 612630 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1822,201,0 chrXI 612809 . A G 3803.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.77;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3803,450,0 chrXI 613110 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.22;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2935,321,0 chrXI 613247 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.50;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3047,333,0 chrXI 613259 . G C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.094;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3896;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.170;QD=18.56;ReadPosRankSum=1.404;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2798,309,0 chrXI 613583 . G A 6407.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=20.6926;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=25.32;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:6407,694,0 chrXI 613793 . G A 703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=165.2226;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=2.605;QD=3.74;ReadPosRankSum=1.692;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:7,181:188:36:736,36,0 chrXI 614127 . A G 3193 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6385;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.83;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3226,363,0 chrXI 614207 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.35;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3502,399,0 chrXI 614318 . A G 3169 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3202,375,0 chrXI 614450 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=158;Dels=0.00;FS=7.106;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.677;QD=23.68;ReadPosRankSum=2.418;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3741,438,0 chrXI 614538 . T A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.23;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3740,423,0 chrXI 615121 . T G 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.734;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.329;QD=22.71;ReadPosRankSum=1.695;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4314,483,0 chrXI 615175 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7779;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.791;QD=19.76;ReadPosRankSum=3.000;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:4,141:147:99:2938,333,0 chrXI 615234 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.1354;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.70;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3451,402,0 chrXI 615361 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.45;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2996,330,0 chrXI 615437 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.97;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2801,300,0 chrXI 615858 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.2102;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.01;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2124,237,0 chrXI 615914 . G C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.2041;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.186;QD=20.01;ReadPosRankSum=0.264;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,176:182:99:3641,405,0 chrXI 616020 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.7873;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.43;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4053,450,0 chrXI 616059 . A G 3190 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.15;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3223,360,0 chrXI 616404 . T C 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.993;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.903;QD=23.10;ReadPosRankSum=1.711;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3765,426,0 chrXI 616917 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2484,273,0 chrXI 616950 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2551,285,0 chrXI 617457 . T C 3194 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.44;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3227,357,0 chrXI 617524 . A G 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.180;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.9541;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-1.163;QD=16.66;ReadPosRankSum=3.380;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:4,110:114:99:1932,222,0 chrXI 617543 . A T 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.199;DP=92;Dels=0.00;FS=6.960;HaplotypeScore=15.2748;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;MQRankSum=-4.055;QD=9.48;ReadPosRankSum=5.355;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:11,81:92:99:905,102,0 chrXI 617548 . A C 670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=19.5284;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;MQRankSum=-1.331;QD=9.71;ReadPosRankSum=1.682;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:81:703,81,0 chrXI 617620 . T C 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=80;Dels=0.00;FS=6.243;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.173;QD=15.24;ReadPosRankSum=1.689;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1252,150,0 chrXI 617753 . A G 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=4.150;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.466;QD=23.35;ReadPosRankSum=1.666;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1247,138,0 chrXI 617954 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=5.051;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.541;QD=22.94;ReadPosRankSum=1.660;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2258,249,0 chrXI 618317 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.1017;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=2;QD=20.49;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3147,348,0 chrXI 618540 . T C 2845 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.23;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2878,330,0 chrXI 618631 . A T 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=122;Dels=0.04;FS=0.000;HaplotypeScore=13.3755;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.620;QD=18.39;ReadPosRankSum=2.303;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2277,255,0 chrXI 618632 . T A 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=122;Dels=0.05;FS=0.000;HaplotypeScore=18.1858;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.195;QD=18.52;ReadPosRankSum=1.643;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2292,255,0 chrXI 618772 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=30.0644;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.67;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3627,390,0 chrXI 618816 . T C 2809 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.21;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2842,321,0 chrXI 618845 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.99;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3228,348,0 chrXI 619007 . A G 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=3.043;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.211;QD=18.04;ReadPosRankSum=1.680;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2451,279,0 chrXI 619045 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.45;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3400,378,0 chrXI 619085 . T A 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.716;QD=23.88;ReadPosRankSum=1.680;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3209,357,0 chrXI 619260 . A T 2924 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.98;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2957,324,0 chrXI 619364 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.290;QD=21.39;ReadPosRankSum=1.695;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2044,225,0 chrXI 619375 . C G 2147 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.69;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2180,243,0 chrXI 619475 . G A 1454 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=19.39;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1487,165,0 chrXI 619480 . A T 1439 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=18.22;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1472,162,0 chrXI 619485 . A G 1340 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=16.75;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1373,156,0 chrXI 619516 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=15.30;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1364,150,0 chrXI 619524 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=15.71;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1463,162,0 chrXI 619607 . G A 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.950;DP=123;Dels=0.00;FS=2.900;HaplotypeScore=8.7183;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.450;QD=25.21;ReadPosRankSum=-0.470;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3134,301,0 chrXI 619794 . G A 4333.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.57;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4333,480,0 chrXI 620047 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.39;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3789,426,0 chrXI 620085 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.672;QD=22.65;ReadPosRankSum=1.706;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3068,345,0 chrXI 620113 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9262;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.15;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2758,321,0 chrXI 620186 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3319,372,0 chrXI 620500 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3257,360,0 chrXI 620816 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.26;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1932,210,0 chrXI 620825 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.50;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1975,222,0 chrXI 620956 . T C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.010;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.595;QD=21.73;ReadPosRankSum=1.677;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2771,324,0 chrXI 620968 . C A 2781 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.4359;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.56;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2814,315,0 chrXI 621343 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.66;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3377,375,0 chrXI 621388 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.94;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3510,396,0 chrXI 621430 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=136;Dels=0.00;FS=2.884;HaplotypeScore=4.2840;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.003;QD=21.23;ReadPosRankSum=2.269;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2920,330,0 chrXI 621443 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.34;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2487,273,0 chrXI 621490 . G T 2431 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.96;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2464,273,0 chrXI 621589 . T A 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=125;Dels=0.00;FS=2.923;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.639;QD=24.61;ReadPosRankSum=2.253;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3109,339,0 chrXI 621619 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.271;HaplotypeScore=6.6556;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.803;QD=24.02;ReadPosRankSum=1.704;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2987,330,0 chrXI 621733 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.61;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3221,357,0 chrXI 621982 . C A 3100 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3133,348,0 chrXI 622127 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.61;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3613,390,0 chrXI 622147 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.69;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3743,411,0 chrXI 622230 . T C 2914 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.89;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2947,333,0 chrXI 622262 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.26;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3265,369,0 chrXI 622408 . C G 3113 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.0426;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.41;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3146,357,0 chrXI 622708 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2469,270,0 chrXI 623698 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3245,375,0 chrXI 623815 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.41;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2088,234,0 chrXI 623830 . A C 2572 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.74;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2605,291,0 chrXI 624124 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6308;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=23.19;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3233,348,0 chrXI 624142 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.177;QD=22.03;ReadPosRankSum=1.706;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2941,330,0 chrXI 624170 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.89;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2811,315,0 chrXI 624205 . T C 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=122;Dels=0.00;FS=3.752;HaplotypeScore=10.5291;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.243;QD=21.95;ReadPosRankSum=1.703;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2711,285,0 chrXI 624274 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.12;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2646,285,0 chrXI 624461 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=137;Dels=0.00;FS=3.595;HaplotypeScore=14.1752;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.603;QD=22.54;ReadPosRankSum=1.655;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3121,348,0 chrXI 624652 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.65;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3255,360,0 chrXI 624661 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.31;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2988,333,0 chrXI 624667 . A G 2878 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=18.69;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2911,327,0 chrXI 624919 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.0682;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.08;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2970,333,0 chrXI 624949 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=149;Dels=0.00;FS=7.622;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=1.540;QD=21.19;ReadPosRankSum=2.416;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3191,366,0 chrXI 625044 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.07;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3332,378,0 chrXI 625172 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.193;HaplotypeScore=2.6744;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.446;QD=20.40;ReadPosRankSum=1.714;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3957,465,0 chrXI 625174 . T A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.69;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4142,450,0 chrXI 625191 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.35;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4254,480,0 chrXI 625275 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.70;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3927,438,0 chrXI 625303 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=178;Dels=0.00;FS=13.386;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.347;QD=20.73;ReadPosRankSum=2.892;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:3690,438,0 chrXI 625985 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=171;Dels=0.00;FS=4.426;HaplotypeScore=13.7355;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.256;QD=23.78;ReadPosRankSum=1.691;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4066,450,0 chrXI 626193 . C A 3197 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.5592;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.20;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3230,354,0 chrXI 626428 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.59;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2473,270,0 chrXI 626557 . C A 2503 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.35;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2536,291,0 chrXI 628158 . T G 3040 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3073,342,0 chrXI 628202 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2967,321,0 chrXI 628397 . C G 2178 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.69;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2211,252,0 chrXI 628616 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.83;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3451,369,0 chrXI 628658 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3738,408,0 chrXI 628760 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=3.165;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.787;QD=21.86;ReadPosRankSum=1.684;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3181,375,0 chrXI 628847 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=183;Dels=0.00;FS=9.177;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.873;QD=22.27;ReadPosRankSum=3.411;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:4,177:183:99:4075,459,0 chrXI 629063 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=3.583;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.604;QD=21.04;ReadPosRankSum=1.711;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3430,396,0 chrXI 629129 . C A 2927 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=21.52;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2960,324,0 chrXI 629639 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.59;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3196,360,0 chrXI 629864 . T C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=142;Dels=0.00;FS=5.796;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.230;QD=20.91;ReadPosRankSum=2.950;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:3002,348,0 chrXI 630615 . T C 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.476;QD=22.20;ReadPosRankSum=1.604;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1232,141,0 chrXI 631180 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.942;QD=23.44;ReadPosRankSum=1.671;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2729,303,0 chrXI 631232 . T C 2742 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2775,309,0 chrXI 631349 . T A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.87;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3545,402,0 chrXI 631487 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.34;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3314,369,0 chrXI 631526 . A T 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.705;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.098;QD=25.12;ReadPosRankSum=1.712;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4421,486,0 chrXI 631559 . C T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.27;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4194,462,0 chrXI 632039 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.48;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3845,426,0 chrXI 632117 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.7820;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.35;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4113,480,0 chrXI 632654 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.33;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3349,378,0 chrXI 632775 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.04;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1188,132,0 chrXI 632869 . A G 557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=36;Dels=0.00;FS=5.027;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=1.139;QD=15.47;ReadPosRankSum=1.634;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:1,34:36:72:590,72,0 chrXI 633026 . T C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.353;QD=21.12;ReadPosRankSum=1.624;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1385,156,0 chrXI 633545 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2869,321,0 chrXI 633641 . T A 2819 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2852,315,0 chrXI 634259 . G A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.25;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3905,423,0 chrXI 634414 . A G 3007 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.33;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3040,339,0 chrXI 634418 . G A 2889 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=20.49;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2922,318,0 chrXI 634424 . A G 2824 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=6.173;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.333;QD=19.61;ReadPosRankSum=2.398;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2857,318,0 chrXI 634635 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.23;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4725,513,0 chrXI 635348 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.21;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1221,132,0 chrXI 635516 . A G 98.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.393;QD=9.83;ReadPosRankSum=1.393;SB=-2.714e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:15:131,15,0 chrXI 635970 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.34;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3724,417,0 chrXI 636244 . G C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,175:182:99:3917,444,0 chrXI 637026 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=160;Dels=0.00;FS=3.093;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.665;QD=22.84;ReadPosRankSum=1.710;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3654,408,0 chrXI 637528 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.93;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3197,360,0 chrXI 638131 . C T 4530.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.32;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4530,489,0 chrXI 638139 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.58;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4101,438,0 chrXI 638417 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=43.6359;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=17.29;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1399,153,0 chrXI 639711 . A G 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.698;QD=21.49;ReadPosRankSum=1.665;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2268,252,0 chrXI 641421 . T C 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=3.867;HaplotypeScore=5.6453;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.565;QD=22.39;ReadPosRankSum=1.696;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2160,249,0 chrXI 641652 . G C 1674 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.67;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1707,189,0 chrXI 641793 . C A 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=3.358;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.400;QD=21.35;ReadPosRankSum=-1.146;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1421,153,0 chrXI 641940 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.00;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1965,213,0 chrXI 642207 . A G 2946 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2979,354,0 chrXI 642394 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.134;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.6982;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.361;QD=23.33;ReadPosRankSum=1.113;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3920,426,0 chrXI 642498 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=24.29;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2802,303,0 chrXI 642512 . G C 2696 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=23.04;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2729,303,0 chrXI 642656 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.07;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2340,252,0 chrXI 642703 . T A 1625 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.57;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1658,183,0 chrXI 642707 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.04;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1737,189,0 chrXI 642801 . G C 1780 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.94;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1813,204,0 chrXI 642807 . T A 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=82;Dels=0.00;FS=2.616;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-1.605;QD=20.10;ReadPosRankSum=2.791;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1681,189,0 chrXI 643005 . T G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.329;HaplotypeScore=4.3770;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.472;QD=20.77;ReadPosRankSum=1.697;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2089,243,0 chrXI 643139 . T A 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.374;QD=22.56;ReadPosRankSum=1.653;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1996,219,0 chrXI 643217 . A T 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.997;HaplotypeScore=9.0150;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.084;QD=23.52;ReadPosRankSum=1.704;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2926,321,0 chrXI 643255 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.90;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2621,297,0 chrXI 643371 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.47;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2685,303,0 chrXI 643448 . T A 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=112;Dels=0.00;FS=8.176;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-2.340;QD=21.94;ReadPosRankSum=2.274;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2490,279,0 chrXI 643474 . G C 2400 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.08;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2433,267,0 chrXI 643509 . G A 2349 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.37;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2382,261,0 chrXI 643590 . T A 1797 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.53;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1830,207,0 chrXI 643696 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=22.90;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1957,219,0 chrXI 643729 . A G 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-1.393;QD=19.81;ReadPosRankSum=1.694;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1875,213,0 chrXI 643816 . T A 2070 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.91;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2103,225,0 chrXI 643856 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;QD=16.35;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1537,162,0 chrXI 643990 . T G 2212 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5370;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.80;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2245,252,0 chrXI 644027 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.29;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2195,243,0 chrXI 644080 . A G 2455 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=23.61;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2488,276,0 chrXI 644390 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=154;Dels=0.00;FS=2.965;HaplotypeScore=12.6239;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.838;QD=21.34;ReadPosRankSum=2.354;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3286,372,0 chrXI 644553 . T A 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.386;QD=23.41;ReadPosRankSum=1.707;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3277,351,0 chrXI 644655 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.61;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2816,315,0 chrXI 645008 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.201;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.470;QD=24.60;ReadPosRankSum=1.707;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3444,381,0 chrXI 645141 . A T 2854 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2887,312,0 chrXI 645690 . T C 2611 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.90;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2644,294,0 chrXI 645733 . T C 2501 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2534,285,0 chrXI 645889 . T C 2552 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2585,294,0 chrXI 645980 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3035;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.31;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3156,354,0 chrXI 646140 . G C 3032 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.66;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3065,348,0 chrXI 646488 . C A 2671 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.7776;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.26;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2704,306,0 chrXI 647294 . G A 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=97;Dels=0.00;FS=44.436;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;MQRankSum=3.241;QD=17.25;ReadPosRankSum=-1.686;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:19,78:97:99:1706,189,0 chrXI 647297 . T C 1429 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=16.06;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1462,171,0 chrXI 647315 . C T 353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=50;Dels=0.00;FS=50.249;HaplotypeScore=5.7020;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=0;MQRankSum=1.690;QD=7.06;ReadPosRankSum=-4.147;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:29,21:50:45:386,45,0 chrXI 647327 . A T 54.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;MQRankSum=0.236;QD=1.25;ReadPosRankSum=-0.157;SB=-3.119e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:9:87,9,0 chrXI 647339 . T C 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.083;DP=153;Dels=0.00;FS=14.602;HaplotypeScore=27.3882;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;MQRankSum=0.431;QD=11.12;ReadPosRankSum=4.140;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:6,146:153:99:1734,201,0 chrXI 647375 . G A 1821.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.941;DP=414;Dels=0.00;FS=0.788;HaplotypeScore=80.1442;MLEAC=1;MLEAF=0.500;MQ=32.72;MQ0=10;MQRankSum=2.086;QD=4.40;ReadPosRankSum=-3.266;SB=-1.027e+03 GT:AD:DP:GQ:PL 0/1:263,150:414:99:1851,0,2885 chrXI 647384 . G A 3198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.112;DP=447;Dels=0.00;FS=2.147;HaplotypeScore=7.8555;MLEAC=1;MLEAF=0.500;MQ=32.70;MQ0=13;MQRankSum=-1.508;QD=7.15;ReadPosRankSum=2.560;SB=-1.418e+03 GT:AD:DP:GQ:PL 0/1:167,278:447:99:3228,0,1836 chrXI 647387 . C A 3356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.055;DP=475;Dels=0.00;FS=4.295;HaplotypeScore=69.3478;MLEAC=1;MLEAF=0.500;MQ=32.85;MQ0=17;MQRankSum=-0.568;QD=7.07;ReadPosRankSum=2.245;SB=-1.267e+03 GT:AD:DP:GQ:PL 0/1:183,291:475:99:3356,0,1992 chrXI 647396 . T C 2201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.099;DP=516;Dels=0.00;FS=27.928;HaplotypeScore=183.7717;MLEAC=1;MLEAF=0.500;MQ=32.75;MQ0=26;MQRankSum=-1.384;QD=4.27;ReadPosRankSum=-0.288;SB=-4.310e+02 GT:AD:DP:GQ:PL 0/1:284,232:516:99:2231,0,3527 chrXI 647402 . C A 838.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;DP=547;Dels=0.00;FS=40.662;HaplotypeScore=126.6692;MLEAC=1;MLEAF=0.500;MQ=32.66;MQ0=29;MQRankSum=-1.246;QD=1.53;ReadPosRankSum=-0.608;SB=-5.270e+02 GT:AD:DP:GQ:PL 0/1:421,126:547:99:868,0,5489 chrXI 647431 . C G 5401.01 filter AC=2;AF=1.00;AN=2;DP=425;Dels=0.00;FS=0.000;HaplotypeScore=17.7054;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=51;QD=12.71;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,420:425:99:5401,615,0 chrXI 647453 . G A 1154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.614;DP=308;Dels=0.00;FS=41.457;HaplotypeScore=19.9159;MLEAC=1;MLEAF=0.500;MQ=27.90;MQ0=45;MQRankSum=-5.479;QD=3.75;ReadPosRankSum=0.429;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:109,199:308:99:1184,0,1296 chrXI 647468 . T A 889.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;DP=257;Dels=0.00;FS=64.679;HaplotypeScore=19.5411;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=49;MQRankSum=4.375;QD=3.46;ReadPosRankSum=-5.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,91:257:99:919,0,795 chrXI 647534 . A T 368 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=33;QD=4.28;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:45:401,45,0 chrXI 647561 . A G 307.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.164;DP=130;Dels=0.00;FS=28.581;HaplotypeScore=11.2407;MLEAC=1;MLEAF=0.500;MQ=18.45;MQ0=42;MQRankSum=5.885;QD=2.36;ReadPosRankSum=2.485;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,70:130:99:337,0,276 chrXI 647564 . G A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.517;DP=135;Dels=0.00;FS=9.594;HaplotypeScore=22.2403;MLEAC=1;MLEAF=0.500;MQ=18.70;MQ0=39;MQRankSum=0.879;QD=0.19;ReadPosRankSum=0.188;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,16:135:55:55,0,600 chrXI 647576 . T A 301.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;DP=173;Dels=0.00;FS=43.299;HaplotypeScore=54.8213;MLEAC=1;MLEAF=0.500;MQ=18.15;MQ0=46;MQRankSum=-5.581;QD=1.74;ReadPosRankSum=-2.150;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:67,80:173:99:331,0,293 chrXI 647585 . T C 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DP=187;Dels=0.00;FS=6.468;HaplotypeScore=74.3318;MLEAC=1;MLEAF=0.500;MQ=18.56;MQ0=41;MQRankSum=2.369;QD=0.49;ReadPosRankSum=-1.241;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:156,31:187:99:121,0,717 chrXI 647591 . C A 332.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.631;DP=188;Dels=0.00;FS=7.819;HaplotypeScore=29.8907;MLEAC=1;MLEAF=0.500;MQ=18.89;MQ0=38;MQRankSum=1.959;QD=1.77;ReadPosRankSum=-2.808;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:115,73:188:99:362,0,528 chrXI 647609 . T C 1235 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=186;Dels=0.00;FS=12.831;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=19.15;MQ0=30;MQRankSum=0.339;QD=6.64;ReadPosRankSum=2.418;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:2,183:186:99:1268,147,0 chrXI 647642 . A G 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.017;DP=136;Dels=0.00;FS=34.048;HaplotypeScore=19.4146;MLEAC=1;MLEAF=0.500;MQ=18.44;MQ0=24;MQRankSum=-0.032;QD=0.29;ReadPosRankSum=2.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,30:136:69:69,0,510 chrXI 647654 . G A 442 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.145;DP=82;Dels=0.00;FS=4.762;HaplotypeScore=32.5024;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=16;MQRankSum=0.875;QD=5.39;ReadPosRankSum=2.416;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:12,70:82:54:475,54,0 chrXI 647657 . C A,T 302.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.282;DP=76;Dels=0.00;FS=2.466;HaplotypeScore=34.0883;MLEAC=1,1;MLEAF=0.500,0.500;MQ=18.21;MQ0=15;MQRankSum=1.683;QD=3.97;ReadPosRankSum=2.482;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/2:11,21,44:76:70:362,258,243,103,0,70 chrXI 647846 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.458;DP=55;Dels=0.00;FS=25.236;HaplotypeScore=14.5291;MLEAC=2;MLEAF=1.00;MQ=8.75;MQ0=19;MQRankSum=0.894;QD=0.34;ReadPosRankSum=3.101;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:15,26:55:6:50,6,0 chrXI 647939 . A G 1963.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.433;DP=304;Dels=0.00;FS=1.840;HaplotypeScore=51.1973;MLEAC=1;MLEAF=0.500;MQ=28.01;MQ0=28;MQRankSum=3.198;QD=6.46;ReadPosRankSum=3.387;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:101,201:304:99:1993,0,453 chrXI 647954 . C A,T 2959.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=5.366;DP=329;Dels=0.00;FS=5.512;HaplotypeScore=47.7110;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.74;MQ0=35;MQRankSum=8.489;QD=8.99;ReadPosRankSum=2.348;SB=-3.846e+02 GT:AD:DP:GQ:PL 1/2:90,70,169:329:99:3019,2263,2377,529,0,452 chrXI 647963 . T C 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.709;DP=361;Dels=0.00;FS=67.778;HaplotypeScore=112.4540;MLEAC=1;MLEAF=0.500;MQ=30.08;MQ0=36;MQRankSum=-2.399;QD=0.11;ReadPosRankSum=3.735;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:324,37:361:68:68,0,3312 chrXI 648020 . A G 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.644;DP=270;Dels=0.00;FS=2.731;HaplotypeScore=43.3445;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=42;MQRankSum=-4.573;QD=0.12;ReadPosRankSum=3.704;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,92:270:63:63,0,1568 chrXI 648023 . G A 1057.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.947;DP=249;Dels=0.00;FS=40.431;HaplotypeScore=43.3779;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=42;MQRankSum=8.349;QD=4.25;ReadPosRankSum=-1.577;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:158,91:249:99:1087,0,505 chrXI 648032 . G A 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DP=187;Dels=0.00;FS=64.332;HaplotypeScore=11.7498;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=38;MQRankSum=-8.523;QD=1.00;ReadPosRankSum=3.516;SB=-1.800e+02 GT:AD:DP:GQ:PL 0/1:67,120:187:99:217,0,930 chrXI 648035 . C T 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.724;DP=174;Dels=0.00;FS=44.552;HaplotypeScore=61.8521;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=37;MQRankSum=-8.527;QD=0.45;ReadPosRankSum=4.979;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:62,102:174:99:108,0,830 chrXI 648044 . C A 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.535;DP=92;Dels=0.00;FS=6.069;HaplotypeScore=24.7260;MLEAC=1;MLEAF=0.500;MQ=22.17;MQ0=31;MQRankSum=0.460;QD=1.18;ReadPosRankSum=-0.995;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:41,46:92:51:139,0,51 chrXI 648106 . C G 40.97 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=0;QD=0.66;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:9:73,9,0 chrXI 648107 . A G 117.13 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=1.75;SB=-2.431e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:18:150,18,0 chrXI 648128 . A G 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.142;DP=153;Dels=0.00;FS=35.806;HaplotypeScore=4.7810;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;MQRankSum=4.439;QD=7.42;ReadPosRankSum=-1.840;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:11,142:153:99:1169,132,0 chrXI 648143 . C T 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.968;DP=206;Dels=0.00;FS=18.491;HaplotypeScore=20.0285;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;MQRankSum=3.843;QD=10.38;ReadPosRankSum=1.935;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:7,195:206:99:2172,243,0 chrXI 648236 . G C 5755.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=17.5433;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=19.12;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:5755,671,0 chrXI 648627 . T G 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=196;Dels=0.00;FS=8.220;HaplotypeScore=18.6754;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.467;QD=21.50;ReadPosRankSum=2.424;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4214,465,0 chrXI 648695 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=3.663;HaplotypeScore=12.1046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.309;QD=20.09;ReadPosRankSum=1.712;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3455,390,0 chrXI 649059 . C T 5325.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.4320;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.56;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:5325,582,0 chrXI 649600 . C A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.6975;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.43;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4685,522,0 chrXI 649635 . T C 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=203;Dels=0.00;FS=5.765;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.846;QD=22.62;ReadPosRankSum=2.945;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4592,510,0 chrXI 649880 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.9743;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=20.30;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2591,288,0 chrXI 650049 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1088,126,0 chrXI 650083 . A T 1037 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.69;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1070,117,0 chrXI 650108 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.09;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1069,117,0 chrXI 650140 . A G 759 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.69;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:792,87,0 chrXI 650307 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.67;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1723,186,0 chrXI 650330 . C G 1677 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.20;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1710,201,0 chrXI 650463 . G T 3010 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.73;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3043,333,0 chrXI 650642 . A T 3041 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.88;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3074,333,0 chrXI 650687 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=138;Dels=0.00;FS=6.711;HaplotypeScore=9.1598;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.704;QD=20.80;ReadPosRankSum=2.396;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2904,330,0 chrXI 650875 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.40;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2982,330,0 chrXI 651018 . T C 2793 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.65;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2826,324,0 chrXI 651082 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=16.9396;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.88;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2939,321,0 chrXI 651373 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8547;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=-0.472;QD=23.60;ReadPosRankSum=1.706;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3148,357,0 chrXI 651424 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3027,333,0 chrXI 651740 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.38;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2047,225,0 chrXI 651958 . G A 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.523;QD=20.36;ReadPosRankSum=0.686;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2211,246,0 chrXI 651978 . T C 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.295;QD=19.90;ReadPosRankSum=1.695;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1904,222,0 chrXI 652034 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=15.6516;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.07;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2181,246,0 chrXI 652240 . T C 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=88;Dels=0.00;FS=6.279;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.186;QD=19.39;ReadPosRankSum=2.393;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1739,195,0 chrXI 652256 . T C 1726 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.36;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1759,201,0 chrXI 652277 . A C 1817 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.35;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1850,204,0 chrXI 652374 . A G 819 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.00;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:852,93,0 chrXI 652384 . A G 865 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.12;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:898,102,0 chrXI 652398 . C T 761 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.03;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:794,87,0 chrXI 652478 . C A 1264 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.18;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1297,141,0 chrXI 652829 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.05;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2499,279,0 chrXI 652867 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=3.551;HaplotypeScore=8.8319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.609;QD=23.04;ReadPosRankSum=1.701;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2613,297,0 chrXI 652995 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.21;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2006,210,0 chrXI 653013 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.64;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1957,216,0 chrXI 653105 . A T 2897 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.76;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2930,321,0 chrXI 653199 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.77;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2030,225,0 chrXI 653233 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.11;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2460,264,0 chrXI 653256 . G A 2218 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.10;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2251,249,0 chrXI 653447 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.39;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2399,261,0 chrXI 653501 . T A 2403 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.56;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2436,276,0 chrXI 654112 . A C 3164 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3197,357,0 chrXI 654228 . A G 4407.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4407,492,0 chrXI 654405 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=7.089;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.534;QD=23.82;ReadPosRankSum=2.406;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4050,471,0 chrXI 654479 . C T 4769.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.23;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4769,525,0 chrXI 654576 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2916;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.68;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2830,318,0 chrXI 654772 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.02;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2266,252,0 chrXI 654789 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.28;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2194,234,0 chrXI 654804 . T G 1783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.161;QD=18.38;ReadPosRankSum=1.625;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1816,213,0 chrXI 654942 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.53;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2892,315,0 chrXI 654985 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.89;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2688,303,0 chrXI 655628 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=3.072;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.829;QD=22.27;ReadPosRankSum=1.635;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3196,372,0 chrXI 655841 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3141,339,0 chrXI 655981 . T G 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.544;QD=21.75;ReadPosRankSum=1.694;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2034,237,0 chrXI 656040 . C A 2566 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.8558;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.38;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2599,288,0 chrXI 656134 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2690,303,0 chrXI 656226 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.68;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3356,369,0 chrXI 656592 . T C 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.370;QD=23.29;ReadPosRankSum=1.712;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4029,450,0 chrXI 656655 . G A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.01;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3727,423,0 chrXI 656736 . G T 2760 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.2789;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.90;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2793,300,0 chrXI 657110 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.20;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2542,273,0 chrXI 657175 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.88;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2619,282,0 chrXI 657302 . G C 2462 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=3.3796;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.86;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2495,282,0 chrXI 657303 . C T 2542 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.269;HaplotypeScore=3.3796;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.215;QD=21.01;ReadPosRankSum=1.417;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2575,282,0 chrXI 657311 . T C 2412 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.16;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2445,273,0 chrXI 657441 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.69;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3113,351,0 chrXI 657504 . T C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.010;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.937;QD=21.66;ReadPosRankSum=1.675;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2676,309,0 chrXI 657669 . T C 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.216;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.613;QD=23.07;ReadPosRankSum=1.705;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3032,348,0 chrXI 657801 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=20.74;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2273,252,0 chrXI 657812 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.59;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2174,243,0 chrXI 657838 . A C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.369;QD=19.30;ReadPosRankSum=1.600;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2079,237,0 chrXI 657928 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=22.06;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1423,153,0 chrXI 657941 . T C 1016 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=19.92;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1049,123,0 chrXI 657972 . A G 923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;MQRankSum=-1.511;QD=19.64;ReadPosRankSum=1.659;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:956,108,0 chrXI 657995 . A T 896 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=18.67;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:929,102,0 chrXI 658012 . A T 786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;MQRankSum=-0.733;QD=15.12;ReadPosRankSum=1.666;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:90:819,90,0 chrXI 658021 . C G 652 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=14.49;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:685,78,0 chrXI 658026 . A T 664 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=15.09;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:75:697,75,0 chrXI 658079 . G A 451 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=11.56;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:484,54,0 chrXI 658175 . C T 676 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=18.78;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:709,78,0 chrXI 658182 . C G 681 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.46;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:81:714,81,0 chrXI 658219 . A G 775 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.53;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:808,90,0 chrXI 658347 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.01;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1690,189,0 chrXI 658396 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=23.16;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1793,195,0 chrXI 658419 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=19.99;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1732,189,0 chrXI 658489 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=13.60;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1257,141,0 chrXI 658515 . C G 1143 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=15.04;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1176,138,0 chrXI 658535 . C A 1395 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=17.88;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1428,159,0 chrXI 658549 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=21.36;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1614,174,0 chrXI 658746 . A C 326 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.36;MQ0=0;QD=12.07;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:359,39,0 chrXI 659190 . G A 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=10.70;MQ0=71;MQRankSum=-2.342;QD=1.10;ReadPosRankSum=0.385;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,58:107:99:148,0,118 chrXI 659215 . A G 192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=11.98;MQ0=71;MQRankSum=-0.042;QD=1.52;ReadPosRankSum=1.580;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,63:126:99:222,0,227 chrXI 659597 . T C 549 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=57;MQRankSum=-2.823;QD=6.46;ReadPosRankSum=2.748;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:3,82:85:66:582,66,0 chrXI 659634 . A G 1146 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.26;MQ0=40;QD=9.24;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1179,135,0 chrXI 659823 . G T 5613.01 filter AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=11;QD=23.68;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5613,624,0 chrXI 659991 . T C 488 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=13.24;MQ0=100;QD=3.09;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,157:158:63:521,63,0 chrXI 660039 . G A 1238 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.21;MQ0=71;QD=8.48;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1271,141,0 chrXI 660077 . A C 1150 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=17.72;MQ0=89;QD=7.06;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,160:163:99:1183,135,0 chrXI 660171 . G A 770 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.36;MQ0=50;QD=5.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,130:130:93:803,93,0 chrXI 660406 . G A 575 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=23.94;MQ0=2;QD=11.27;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:66:608,66,0 chrXI 660424 . C T 231 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=3;QD=16.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:14:30:264,30,0 chrXI 660530 . G A 101.26 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=15.30;MQ0=4;QD=1.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:15:134,15,0 chrXI 660537 . A G 95.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.32;MQ0=4;MQRankSum=1.098;QD=1.24;ReadPosRankSum=2.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,75:77:15:128,15,0 chrXI 660557 . A G 95.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.024;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.6056;MLEAC=2;MLEAF=1.00;MQ=22.14;MQ0=2;MQRankSum=-1.023;QD=1.70;ReadPosRankSum=-0.024;SB=-3.020e+01 GT:AD:DP:GQ:PL 1/1:2,52:56:15:128,15,0 chrXI 660561 . A G 96.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.029;DP=58;Dels=0.00;FS=110.156;HaplotypeScore=7.4364;MLEAC=1;MLEAF=0.500;MQ=23.49;MQ0=2;MQRankSum=5.246;QD=1.66;ReadPosRankSum=-0.744;SB=-3.425e+00 GT:AD:DP:GQ:PL 0/1:41,16:58:7:126,0,7 chrXI 660637 . T C 269 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=1;QD=12.23;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:36:302,36,0 chrXI 660644 . A T 275 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=17;Dels=0.00;FS=12.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=1;MQRankSum=-0.434;QD=16.18;ReadPosRankSum=1.519;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:1,16:17:36:308,36,0 chrXI 660787 . C T 588 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=5;QD=17.82;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:33:69:621,69,0 chrXI 660798 . C T 560 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=4;QD=16.97;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:69:593,69,0 chrXI 660804 . A G 569 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=5;QD=16.26;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:35:69:602,69,0 chrXI 660833 . A G 1180 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=9;QD=17.61;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1213,138,0 chrXI 660936 . T G 42.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.42;MQ0=11;QD=3.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,13:14:9:75,9,0 chrXI 660999 . A G 324 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.95;MQ0=14;QD=11.17;SB=-1.749e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:357,42,0 chrXI 661005 . T C 324 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=14;MQRankSum=1.302;QD=10.80;ReadPosRankSum=1.519;SB=-1.789e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:42:357,42,0 chrXI 661030 . G A 587 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=9;QD=13.98;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:620,69,0 chrXI 661088 . G A 296 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.43;MQ0=15;QD=7.22;SB=-8.666e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:36:329,36,0 chrXI 661093 . G C 293 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.28;MQ0=14;QD=7.92;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:36:326,36,0 chrXI 661167 . C T 852 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=10;QD=19.36;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:885,96,0 chrXI 661199 . A G 808 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=9;QD=17.96;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:96:841,96,0 chrXI 661229 . A G 120.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=2;MQRankSum=-0.791;QD=9.24;ReadPosRankSum=1.423;SB=-1.016e+02 GT:AD:DP:GQ:PL 1/1:2,11:13:18:153,18,0 chrXI 661398 . C A 47.97 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.8428;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=10;QD=2.00;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:9:80,9,0 chrXI 662044 . C T 264 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.86;MQ0=15;QD=10.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:33:297,33,0 chrXI 662123 . A G 1593 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=7;QD=23.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1626,186,0 chrXI 662292 . T C 3149 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=14;MQRankSum=0.456;QD=21.42;ReadPosRankSum=1.680;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3182,363,0 chrXI 662372 . A C 2922 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=34;QD=18.26;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2955,330,0 chrXI 662530 . C T 1117 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.79;MQ0=46;QD=10.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1150,129,0 chrXI 662665 . A G 604 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.99;MQ0=67;QD=5.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,106:109:72:637,72,0 chrXI 662685 . G A 100.26 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.46;MQ0=59;QD=1.37;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,72:73:15:133,15,0 chrXI 662887 . A G 66.51 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.95;MQ0=22;QD=1.90;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,34:35:12:99,12,0 chrXI 662947 . T C 1614 filter AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.93;MQ0=40;QD=7.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:1647,192,0 chrXI 663021 . G A 604 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=17.51;MQ0=14;QD=5.86;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:72:637,72,0 chrXI 663042 . C T 347 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=18.11;MQ0=9;QD=8.46;SB=-7.059e-03 GT:AD:DP:GQ:PL 1/1:0,39:41:42:380,42,0 chrXI 663043 . G C 320 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=18.61;MQ0=9;QD=7.80;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:0,38:41:39:353,39,0 chrXI 663128 . A G 125.13 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.85;MQ0=13;QD=6.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:20:18:158,18,0 chrXI 663149 . A G 241 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=8;QD=13.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:30:274,30,0 chrXI 663226 . T C 1062 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=5;QD=16.34;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1095,126,0 chrXI 663255 . G A 1002 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=3;QD=15.90;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1035,117,0 chrXI 663269 . A G 841 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=2;QD=14.50;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:874,102,0 chrXI 663275 . A G 831 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=1;QD=15.68;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:864,99,0 chrXI 663293 . C T 661 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=1;QD=14.06;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:694,78,0 chrXI 663313 . C A 104.26 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=8.5884;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=3;QD=4.17;SB=-1.162e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:15:137,15,0 chrXI 663324 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.180;DP=44;Dels=0.02;FS=2.585;HaplotypeScore=10.0722;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=9;MQRankSum=-2.379;QD=0.41;ReadPosRankSum=3.074;SB=-5.574e+01 GT:AD:DP:GQ:PL 1/1:4,39:43:6:49,6,0 chrXI 663350 . A T 1555 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.157;DP=89;Dels=0.00;FS=4.057;HaplotypeScore=6.7622;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=7;MQRankSum=1.217;QD=17.47;ReadPosRankSum=2.360;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1588,177,0 chrXI 663380 . C T 2593 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=133.1180;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=8;QD=17.29;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2626,288,0 chrXI 663423 . G A 2847 filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=20;QD=16.95;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2880,315,0 chrXI 663442 . G T 1769 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=22;QD=13.71;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:1802,198,0 chrXI 663490 . A G 277 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=30;QD=4.86;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:36:310,36,0 chrXI 663509 . C A 697 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.063;DP=95;Dels=0.00;FS=1.530;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=18;MQRankSum=0.476;QD=7.34;ReadPosRankSum=0.225;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:17,78:95:60:730,60,0 chrXI 663578 . A G 3495.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=11;MQRankSum=0.642;QD=15.40;ReadPosRankSum=1.716;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:3495,387,0 chrXI 663684 . C G 1933 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.7616;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=10;QD=17.73;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:1966,228,0 chrXI 663749 . T C 4605.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=7;MQRankSum=-0.795;QD=21.22;ReadPosRankSum=1.699;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,213:217:99:4605,525,0 chrXI 663759 . T C 3893.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=8;MQRankSum=-0.693;QD=20.71;ReadPosRankSum=1.694;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3893,441,0 chrXI 663809 . G A 1548 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=23;QD=12.09;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1581,180,0 chrXI 663830 . G A 1313 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.9946;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=20;QD=11.94;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1346,144,0 chrXI 664053 . C T 3653.01 filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.4736;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=16;QD=19.53;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3653,396,0 chrXI 664111 . G A 5269.01 filter AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=5;QD=22.52;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5269,588,0 chrXI 664144 . C T 4787.01 filter AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=13;QD=22.06;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4787,528,0 chrXI 664233 . C T 3658.01 filter AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=27;QD=20.21;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3658,405,0 chrXI 664262 . T C 3854.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=199;Dels=0.00;FS=3.031;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=12;MQRankSum=-0.387;QD=19.37;ReadPosRankSum=2.344;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3854,432,0 chrXI 664278 . A G 4142.01 filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=6;QD=20.71;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4142,465,0 chrXI 664299 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=2;MQRankSum=-0.808;QD=21.29;ReadPosRankSum=1.643;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4194,474,0 chrXI 664310 . A G 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=208;Dels=0.00;FS=6.014;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;MQRankSum=0.181;QD=21.16;ReadPosRankSum=2.946;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:3,202:208:99:4402,504,0 chrXI 664363 . A G 6388.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;DP=285;Dels=0.00;FS=6.597;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=12;MQRankSum=-1.425;QD=22.41;ReadPosRankSum=2.324;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:2,283:285:99:6388,723,0 chrXI 664413 . T C 3639.01 filter AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.6140;MLEAC=2;MLEAF=1.00;MQ=33.38;MQ0=43;QD=16.69;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:3639,402,0 chrXI 664494 . G A 1601 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=6;QD=17.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1634,180,0 chrXI 664498 . G A 1714 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=3;QD=19.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1747,189,0 chrXI 664620 . A C 834 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=22;MQRankSum=-1.173;QD=9.93;ReadPosRankSum=1.676;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,82:84:99:867,108,0 chrXI 664633 . C G 256 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=14.7949;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=8;QD=6.56;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,37:39:33:289,33,0 chrXI 665927 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=0;QD=8.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:57,6,0 chrXI 665931 . A G 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=1;MQRankSum=0.736;QD=6.19;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:4:6:56,6,0 chrXI 665962 . G A 16.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=10;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.55;MQ0=5;MQRankSum=1.231;QD=1.62;ReadPosRankSum=0.358;SB=-1.357e+00 GT:AD:DP:GQ:PL 0/1:2,8:10:13:46,0,13 chrXI 665985 . A G 65.51 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.55;MQ0=5;QD=6.55;SB=-5.355e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:98,12,0 chrXI 666022 . T C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DP=21;Dels=0.00;FS=4.771;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=11.83;MQ0=12;MQRankSum=-0.573;QD=1.71;ReadPosRankSum=-2.054;SB=3.077e-04 GT:AD:DP:GQ:PL 0/1:13,8:21:48:66,0,48 chrXI 666055 . T G 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DP=18;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.63;MQ0=9;MQRankSum=0.573;QD=4.22;ReadPosRankSum=2.054;SB=1.44 GT:AD:DP:GQ:PL 0/1:10,8:18:25:106,0,25 chrXI 666062 . G A 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;DP=18;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.63;MQ0=9;MQRankSum=-0.573;QD=4.22;ReadPosRankSum=2.054;SB=1.44 GT:AD:DP:GQ:PL 0/1:10,8:18:25:106,0,25 chrXI 666072 . C G 144.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.63;MQ0=9;QD=8.00;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:24:177,24,0 chrXI 666117 . A T 12.19 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=13.49;MQ0=2;MQRankSum=0.736;QD=2.03;ReadPosRankSum=0.736;SB=12.84 GT:AD:DP:GQ:PL 1/1:1,2:6:6:43,6,0 chrXI 666123 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrXI 666177 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrXI 666216 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrXI 666522 . C G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.9677;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.26;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:54,6,0 chrXI 666523 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.9677;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.198;QD=3.11;ReadPosRankSum=1.495;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,5:7:6:53,6,0 chrXI 666535 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.97;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 chrXI 666683 . T G 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;DP=45;Dels=0.00;FS=17.269;HaplotypeScore=39.9438;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=8;MQRankSum=-0.166;QD=0.36;ReadPosRankSum=-2.121;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,8:45:46:46,0,100 chrXI 666789 . T G 150.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;DP=107;Dels=0.05;FS=0.000;HaplotypeScore=94.1214;MLEAC=1;MLEAF=0.500;MQ=20.30;MQ0=11;MQRankSum=0.423;QD=1.40;ReadPosRankSum=0.361;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:72,29:102:99:180,0,220 chrXI 666812 . T G 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;DP=68;Dels=0.01;FS=6.284;HaplotypeScore=33.1565;MLEAC=1;MLEAF=0.500;MQ=18.43;MQ0=10;MQRankSum=-0.655;QD=0.91;ReadPosRankSum=2.232;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:48,14:67:92:92,0,252 chrXII 11226 . A C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;DP=37;Dels=0.03;FS=2.413;HaplotypeScore=30.5635;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=5;MQRankSum=1.320;QD=0.31;ReadPosRankSum=-0.720;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:27,8:36:41:41,0,184 chrXII 11399 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrXII 11403 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrXII 11404 . A C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=7.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:47,6,0 chrXII 11408 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrXII 11448 . T C 37.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.80;MQ0=1;QD=5.42;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:70,9,0 chrXII 15281 . A C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=2.35;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,7:8:6:50,6,0 chrXII 15424 . C T 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.737;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-0.147;QD=22.40;ReadPosRankSum=1.142;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2161,219,0 chrXII 15487 . G T 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.078;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.303;QD=23.90;ReadPosRankSum=0.036;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3417,343,0 chrXII 15654 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.19;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3572,387,0 chrXII 15672 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.63;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3872,435,0 chrXII 15924 . G A 4886.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.52;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4886,528,0 chrXII 15937 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.48;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4704,504,0 chrXII 15964 . T C 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.752;DP=199;Dels=0.00;FS=3.424;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.892;QD=20.79;ReadPosRankSum=-0.140;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4138,480,0 chrXII 16137 . T C 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=199;Dels=0.00;FS=3.622;HaplotypeScore=19.0236;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-1.732;QD=21.99;ReadPosRankSum=1.697;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4376,489,0 chrXII 16175 . A C 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.093;QD=22.60;ReadPosRankSum=1.713;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4091,468,0 chrXII 16192 . C T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=24.17;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4399,474,0 chrXII 16296 . A C 3825.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.63;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3825,438,0 chrXII 16305 . G T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.40;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3659,399,0 chrXII 16317 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.419;QD=19.68;ReadPosRankSum=1.713;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3581,408,0 chrXII 16331 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.547;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.342;QD=20.01;ReadPosRankSum=1.712;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3462,381,0 chrXII 16486 . T C 3131 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.53;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3164,372,0 chrXII 16523 . C G 2948 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.6444;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.84;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2981,336,0 chrXII 16672 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.73;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3346,369,0 chrXII 16757 . T C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=86;Dels=0.00;FS=6.279;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.731;QD=18.65;ReadPosRankSum=2.393;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1637,183,0 chrXII 16772 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=17.10;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1606,174,0 chrXII 16909 . T G 2187 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.88;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2220,261,0 chrXII 17307 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.658;QD=22.10;ReadPosRankSum=1.708;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3149,354,0 chrXII 17443 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.58;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2698,288,0 chrXII 17503 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.90;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2144,240,0 chrXII 17651 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=24.57;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3391,360,0 chrXII 17679 . T G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-0.671;QD=22.36;ReadPosRankSum=1.701;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2560,291,0 chrXII 17745 . C G 2309 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.43;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2342,261,0 chrXII 17755 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=22.31;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2666,288,0 chrXII 17813 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.2326;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.41;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3223,363,0 chrXII 17845 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=23.10;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3175,345,0 chrXII 17865 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=20.69;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2598,285,0 chrXII 17874 . T G 2135 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=18.89;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2168,246,0 chrXII 17907 . T A 1762 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=17.45;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1795,198,0 chrXII 17945 . A C 1634 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=14.72;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1667,195,0 chrXII 17988 . G T 2020 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=16.83;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2053,222,0 chrXII 17994 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=15.99;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2048,222,0 chrXII 18007 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.60;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2191,243,0 chrXII 18087 . G C 2262 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=19.01;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2295,264,0 chrXII 18106 . T A 2098 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=17.34;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2131,243,0 chrXII 18108 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=17.04;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2146,243,0 chrXII 18150 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=15.06;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1720,201,0 chrXII 18156 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=14.15;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1802,198,0 chrXII 18456 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=18.17;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2123,231,0 chrXII 18460 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=18.67;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2105,225,0 chrXII 18480 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.51;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2169,246,0 chrXII 18513 . T C 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=4.281;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.241;QD=16.62;ReadPosRankSum=1.680;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2260,261,0 chrXII 18699 . T C 2217 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.95;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2250,249,0 chrXII 18771 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.44;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2456,264,0 chrXII 18883 . G C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.81;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3534,399,0 chrXII 19117 . G A 5672.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.1385;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.44;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5672,615,0 chrXII 19151 . G A 5560.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.79;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5560,600,0 chrXII 19164 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=20.53;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4557,507,0 chrXII 19191 . T A 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=4.260;HaplotypeScore=7.6892;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.810;QD=18.70;ReadPosRankSum=1.694;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3478,384,0 chrXII 19212 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=16.88;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3004,336,0 chrXII 19236 . A T 3098 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.55;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3131,342,0 chrXII 19685 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.21;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1356,147,0 chrXII 19686 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.23;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1357,147,0 chrXII 19759 . G A 761 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.51;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:87:794,87,0 chrXII 19819 . T G 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.264;QD=18.80;ReadPosRankSum=1.674;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1142,129,0 chrXII 19832 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.48;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1429,156,0 chrXII 19910 . A T 1380 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=150.7753;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.56;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1413,156,0 chrXII 19941 . A C 901 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.3420;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=14.77;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:934,105,0 chrXII 20130 . C G 2245 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0571;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.87;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2278,252,0 chrXII 20154 . T C 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=4.025;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-1.624;QD=19.76;ReadPosRankSum=1.696;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1930,228,0 chrXII 20173 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.51;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2227,249,0 chrXII 20224 . C T 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.322;DP=127;Dels=0.00;FS=2.735;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.185;QD=20.02;ReadPosRankSum=-2.294;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2576,276,0 chrXII 20228 . G T 2512 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.62;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2545,273,0 chrXII 20305 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.9678;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.98;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2341,258,0 chrXII 20427 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.58;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2989,324,0 chrXII 20614 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=85.1100;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=0.12;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:6:43,6,0 chrXII 20678 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.71;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2240,249,0 chrXII 20699 . G A 2110 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.75;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2143,246,0 chrXII 20715 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.17;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1811,201,0 chrXII 20990 . C A 879 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=22.54;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:912,99,0 chrXII 21053 . T A 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.119;QD=23.43;ReadPosRankSum=1.613;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1392,153,0 chrXII 21246 . T G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=169;Dels=0.00;FS=5.550;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.596;QD=20.50;ReadPosRankSum=2.801;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3465,399,0 chrXII 21252 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.1545;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.98;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3477,414,0 chrXII 21693 . C G 4833.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.9112;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.87;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4833,552,0 chrXII 21712 . A T 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.307;QD=22.21;ReadPosRankSum=1.702;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5064,561,0 chrXII 21869 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.65;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3313,390,0 chrXII 21957 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3999;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.60;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3230,366,0 chrXII 21990 . C T 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.832;QD=18.56;ReadPosRankSum=-0.765;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:2910,324,0 chrXII 22013 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=13.94;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:1929,210,0 chrXII 22019 . T C 1662 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=12.78;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1695,192,0 chrXII 22028 . A G 1657 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=11.84;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1690,192,0 chrXII 22074 . T C 2345 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=15.03;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2378,264,0 chrXII 22083 . T C 2722 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.23;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2755,309,0 chrXII 22182 . A C 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=0.118;QD=21.52;ReadPosRankSum=1.711;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3487,387,0 chrXII 22201 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;MQRankSum=-1.710;QD=20.51;ReadPosRankSum=1.665;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3253,372,0 chrXII 22222 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=20.07;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3144,360,0 chrXII 22436 . G A 1946 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=19.08;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1979,228,0 chrXII 22437 . G A 2009 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=19.89;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2042,222,0 chrXII 22438 . G C 1944 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=19.44;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1977,222,0 chrXII 22443 . A G 1979 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=17.99;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2012,237,0 chrXII 22509 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.51;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2829,315,0 chrXII 22572 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.41;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2538,276,0 chrXII 22902 . T A 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=3.043;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.169;QD=20.20;ReadPosRankSum=1.498;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2720,309,0 chrXII 22963 . C G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.50;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3418,390,0 chrXII 23110 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=136;Dels=0.00;FS=7.689;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-2.067;QD=18.82;ReadPosRankSum=2.322;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2593,291,0 chrXII 23219 . G C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.18;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3388,387,0 chrXII 23228 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=163;Dels=0.00;FS=10.034;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.809;QD=20.14;ReadPosRankSum=2.895;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3282,372,0 chrXII 23505 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.459;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5626;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.843;QD=22.02;ReadPosRankSum=1.687;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3347,355,0 chrXII 23568 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=133;Dels=0.00;FS=7.052;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.447;QD=20.55;ReadPosRankSum=2.317;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,128:133:99:2766,315,0 chrXII 23820 . G C 2840 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6600;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=18.93;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2873,321,0 chrXII 23826 . C G 2798 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=18.17;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2831,321,0 chrXII 23845 . T A 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.266;QD=17.17;ReadPosRankSum=1.690;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2832,312,0 chrXII 23846 . C A 2860 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.23;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:2893,315,0 chrXII 23981 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.22;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3331,369,0 chrXII 24051 . T C 4297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=3.397;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=0.774;QD=22.86;ReadPosRankSum=1.714;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4297,483,0 chrXII 24110 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=4.322;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.165;QD=23.48;ReadPosRankSum=1.711;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3874,429,0 chrXII 24384 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=3.945;HaplotypeScore=6.9193;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.168;QD=21.35;ReadPosRankSum=1.676;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2680,309,0 chrXII 24473 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.30;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2782,303,0 chrXII 24525 . T A 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.518;QD=21.29;ReadPosRankSum=1.682;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2971,336,0 chrXII 24552 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.736;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.798;QD=21.04;ReadPosRankSum=2.303;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2852,321,0 chrXII 24890 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.47;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3797,411,0 chrXII 24893 . T A 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.733;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.138;QD=22.47;ReadPosRankSum=1.668;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3663,399,0 chrXII 25143 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.04;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3028,336,0 chrXII 25161 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.010;QD=20.85;ReadPosRankSum=1.250;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2598,275,0 chrXII 25369 . T G 1167 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.02;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1200,135,0 chrXII 25405 . T A 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.834;QD=24.91;ReadPosRankSum=1.668;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1378,147,0 chrXII 25482 . T C 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=22.61;ReadPosRankSum=1.672;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1322,150,0 chrXII 25545 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.51;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2239,249,0 chrXII 25582 . T C 2499 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.72;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2532,288,0 chrXII 25933 . A G 3026 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.64;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3059,336,0 chrXII 26176 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.19;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3233,348,0 chrXII 26194 . C G 2576 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.28;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2609,294,0 chrXII 26344 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.45;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3283,351,0 chrXII 27042 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.1129;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.29;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3056,336,0 chrXII 27061 . A G 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=148;Dels=0.00;FS=3.011;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.058;QD=18.95;ReadPosRankSum=2.416;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2837,333,0 chrXII 28676 . G C 2635 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.33;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2668,303,0 chrXII 28868 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.07;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4621,516,0 chrXII 29075 . C A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.97;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3239,363,0 chrXII 29085 . G C 3074 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.37;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,172:177:99:3107,357,0 chrXII 29612 . A G 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7423;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.329;QD=22.42;ReadPosRankSum=1.631;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3879,441,0 chrXII 29773 . C A 2936 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.24;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:2969,324,0 chrXII 29781 . T G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=171;Dels=0.00;FS=5.402;HaplotypeScore=12.1134;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.108;QD=16.05;ReadPosRankSum=2.934;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:3,165:171:99:2777,330,0 chrXII 29947 . A G 2268 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.40;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2301,252,0 chrXII 30156 . T C 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.289;QD=24.18;ReadPosRankSum=1.696;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2354,264,0 chrXII 30768 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.90;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2813,321,0 chrXII 30927 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.40;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2885,318,0 chrXII 30930 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.78;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2719,309,0 chrXII 31128 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.13;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3364,372,0 chrXII 31221 . T C 5277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=232;Dels=0.00;FS=9.580;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.399;QD=22.75;ReadPosRankSum=2.407;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:5277,618,0 chrXII 31721 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=23.76;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1435,159,0 chrXII 31777 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=25.81;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1814,201,0 chrXII 31802 . T C 1215 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=23.37;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1248,144,0 chrXII 31811 . G A 1110 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=23.62;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1143,126,0 chrXII 31830 . T C 877 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=20.88;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:910,105,0 chrXII 31961 . A G 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.24;SB=-2.798e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:9:83,9,0 chrXII 31962 . T C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.10;SB=-2.898e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:9:77,9,0 chrXII 31966 . C A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;QD=0.98;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:9:80,9,0 chrXII 31987 . A G 181.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.679;DP=94;Dels=0.00;FS=171.820;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.05;MQ0=0;MQRankSum=2.050;QD=1.93;ReadPosRankSum=7.839;SB=2.98 GT:AD:DP:GQ:PL 1/1:44,50:94:24:214,24,0 chrXII 32069 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=23.41;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1578,171,0 chrXII 32078 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=22.72;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1555,171,0 chrXII 32094 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=24.39;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1765,186,0 chrXII 32310 . T A 2043 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.45;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2076,228,0 chrXII 32511 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.87;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1936,213,0 chrXII 32524 . G T 2025 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.88;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2058,228,0 chrXII 32640 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.2752;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.37;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1743,195,0 chrXII 32690 . T C 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=3.303;HaplotypeScore=5.8687;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.565;QD=22.69;ReadPosRankSum=1.619;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2143,246,0 chrXII 32805 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.84;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2138,243,0 chrXII 32929 . C G 2656 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.10;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2689,309,0 chrXII 33027 . C G 2811 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.3449;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.14;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2844,315,0 chrXII 33093 . A G 3180 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.00;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3213,360,0 chrXII 33112 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.423;QD=20.08;ReadPosRankSum=1.688;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3205,351,0 chrXII 33425 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.7924;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.71;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2645,291,0 chrXII 33717 . G C 2756 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.97;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2789,318,0 chrXII 34080 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3368,381,0 chrXII 34343 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2497,270,0 chrXII 34786 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3862,429,0 chrXII 34944 . A G 4817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.601;QD=22.62;ReadPosRankSum=1.683;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4817,543,0 chrXII 35024 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4992;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.43;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3936,426,0 chrXII 35196 . A G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.147;QD=20.58;ReadPosRankSum=1.708;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2956,342,0 chrXII 35207 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.22;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2936,318,0 chrXII 35238 . T G 2123 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.61;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2156,246,0 chrXII 35267 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.57;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1780,198,0 chrXII 35464 . C G 745 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=16.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:87:778,87,0 chrXII 35481 . T C 800 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-1.144;QD=15.09;ReadPosRankSum=1.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:93:833,93,0 chrXII 35482 . A G 752 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=13.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:54:93:785,93,0 chrXII 35569 . T C 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.299;QD=24.86;ReadPosRankSum=2.405;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2793,318,0 chrXII 35616 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=1.526;QD=25.31;ReadPosRankSum=1.664;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2589,291,0 chrXII 35779 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.182;DP=199;Dels=0.00;FS=8.919;HaplotypeScore=14.3153;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=2.439;QD=21.36;ReadPosRankSum=3.352;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:4,191:199:99:4250,483,0 chrXII 35854 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.737;DP=161;Dels=0.00;FS=7.903;HaplotypeScore=10.0800;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;MQRankSum=-1.837;QD=21.99;ReadPosRankSum=3.708;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:5,156:161:99:3540,399,0 chrXII 35875 . A T 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=144;Dels=0.00;FS=7.944;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;MQRankSum=-1.442;QD=19.92;ReadPosRankSum=2.398;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2902,321,0 chrXII 35890 . A G 2802 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1702;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=18.68;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2835,324,0 chrXII 35952 . G A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.03;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4191,453,0 chrXII 36311 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.7943;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.07;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2825,318,0 chrXII 36707 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.21;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1681,183,0 chrXII 36777 . G A 946 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=16.60;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:979,105,0 chrXII 36792 . T C 783 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=14.50;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:93:816,93,0 chrXII 36833 . T G 1170 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=73;Dels=0.00;FS=6.707;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;MQRankSum=-0.321;QD=16.03;ReadPosRankSum=2.382;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1203,135,0 chrXII 36841 . C T 1243 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=16.36;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1276,138,0 chrXII 36842 . C T 1211 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=15.53;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1244,144,0 chrXII 36846 . T A 1316 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=4.243;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=-1.447;QD=15.48;ReadPosRankSum=1.691;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1349,150,0 chrXII 36882 . G C 1887 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=19.45;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1920,213,0 chrXII 36936 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=22.61;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2023,219,0 chrXII 36981 . A G 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.823;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-0.084;QD=21.33;ReadPosRankSum=1.690;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1825,219,0 chrXII 37014 . C T 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=5.6140;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;MQRankSum=-1.684;QD=17.53;ReadPosRankSum=1.395;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1348,153,0 chrXII 37015 . T C 1270 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=17.16;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1303,153,0 chrXII 37050 . T C 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;MQRankSum=-1.146;QD=16.78;ReadPosRankSum=1.679;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1124,129,0 chrXII 37123 . A C 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.767;QD=20.52;ReadPosRankSum=1.688;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1654,192,0 chrXII 37151 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.88;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1535,177,0 chrXII 37155 . A T 1463 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=17.63;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1496,171,0 chrXII 37163 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=18.00;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1635,177,0 chrXII 37196 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=19.35;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1794,195,0 chrXII 37375 . T A 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.160;QD=23.17;ReadPosRankSum=1.700;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2558,279,0 chrXII 37448 . A G 3282.01 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.90;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3282,363,0 chrXII 37449 . C T 3169 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.31;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3202,366,0 chrXII 37450 . C A 3107 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.18;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3140,366,0 chrXII 37509 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.26;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2607,300,0 chrXII 37705 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=174;Dels=0.00;FS=3.192;HaplotypeScore=10.0932;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.590;QD=21.49;ReadPosRankSum=1.712;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3740,417,0 chrXII 37750 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.75;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3258,369,0 chrXII 37762 . A T 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.2697;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.039;QD=18.23;ReadPosRankSum=1.578;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3282,369,0 chrXII 37834 . G T 2953 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.56;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2986,318,0 chrXII 37937 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.31;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3333,363,0 chrXII 37966 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.77;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3102,339,0 chrXII 38053 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2267,255,0 chrXII 38224 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.11;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3569,393,0 chrXII 38281 . G T 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6665;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.853;QD=24.87;ReadPosRankSum=1.707;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3432,369,0 chrXII 38338 . G T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3615,402,0 chrXII 38419 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.882;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.244;QD=22.61;ReadPosRankSum=-1.243;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3685,391,0 chrXII 38539 . T A 2866 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2899,330,0 chrXII 39312 . C G 2634 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2667,291,0 chrXII 39582 . G A 883 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.86;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:916,99,0 chrXII 40119 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3495,384,0 chrXII 40379 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.29;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3167,342,0 chrXII 40454 . C A 2177 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=13.4091;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.54;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2210,246,0 chrXII 40552 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=145;Dels=0.00;FS=7.733;HaplotypeScore=7.4592;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-2.003;QD=21.88;ReadPosRankSum=2.346;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3206,369,0 chrXII 40568 . G T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.25;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3394,372,0 chrXII 40674 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.664;QD=23.88;ReadPosRankSum=1.709;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3653,414,0 chrXII 40839 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.381;QD=22.25;ReadPosRankSum=1.708;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3193,354,0 chrXII 40943 . C A 3101 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.85;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3134,339,0 chrXII 41037 . G T 1328 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.12;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1361,156,0 chrXII 41207 . C T 502 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.73;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:60:535,60,0 chrXII 41301 . T C 821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.520;QD=20.52;ReadPosRankSum=1.386;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:96:854,96,0 chrXII 41556 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3675,399,0 chrXII 42087 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=4.055;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.230;QD=23.99;ReadPosRankSum=1.708;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3503,390,0 chrXII 42243 . A G 2228 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.37;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2261,261,0 chrXII 42591 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=126;Dels=0.00;FS=2.923;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.030;QD=20.25;ReadPosRankSum=2.391;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2584,288,0 chrXII 43269 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.616;DP=166;Dels=0.00;FS=5.277;HaplotypeScore=9.1089;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.409;QD=20.53;ReadPosRankSum=2.177;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:3,162:166:99:3408,381,0 chrXII 43308 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.39;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3626,396,0 chrXII 43316 . A G 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=179;Dels=0.00;FS=10.049;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-1.950;QD=18.62;ReadPosRankSum=2.394;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3333,372,0 chrXII 43341 . G T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.68;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3251,351,0 chrXII 43361 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.31;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2907,315,0 chrXII 43499 . A G 6587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=286;Dels=0.00;FS=7.589;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.091;QD=23.03;ReadPosRankSum=2.371;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:2,280:286:99:6587,741,0 chrXII 44472 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.2467;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.94;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2885,321,0 chrXII 44508 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=124;Dels=0.00;FS=5.712;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=2.050;QD=21.36;ReadPosRankSum=2.926;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:3,119:124:99:2682,306,0 chrXII 44676 . T A 2386 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.12;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2419,270,0 chrXII 44691 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=17.99;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2318,252,0 chrXII 44703 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.11;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2441,270,0 chrXII 45070 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=8.048;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.830;QD=23.37;ReadPosRankSum=2.410;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2908,327,0 chrXII 45294 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.777;QD=22.53;ReadPosRankSum=1.705;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2917,327,0 chrXII 45670 . A G 1854 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1887,213,0 chrXII 45892 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2446,285,0 chrXII 46284 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2856,312,0 chrXII 46556 . C T 882 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.17;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:915,99,0 chrXII 46669 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=20.53;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1696,186,0 chrXII 46912 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.59;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1639,186,0 chrXII 46986 . A G 1812 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.32;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1845,204,0 chrXII 47080 . C T 1141 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=10.9154;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=17.29;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1174,129,0 chrXII 47158 . A G 1686 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.10;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1719,195,0 chrXII 47240 . G C 1591 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.10;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1624,186,0 chrXII 47422 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.48;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1966,219,0 chrXII 47553 . T A 24.16 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.526;DP=83;Dels=0.00;FS=5.774;HaplotypeScore=285.1748;MLEAC=1;MLEAF=0.500;MQ=56.52;MQ0=0;MQRankSum=0.609;QD=0.29;ReadPosRankSum=-4.452;SB=-1.414e-01 GT:AD:DP:GQ:PL 0/1:75,8:83:12:54,0,12 chrXII 47649 . T C 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=9.149;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.209;QD=19.12;ReadPosRankSum=2.374;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1276,147,0 chrXII 47657 . A G 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=64;Dels=0.00;FS=2.633;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.540;QD=19.23;ReadPosRankSum=2.890;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1264,144,0 chrXII 47928 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=24.19;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3992,447,0 chrXII 48027 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.60;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3420,375,0 chrXII 48092 . T C 5146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=229;Dels=0.00;FS=3.386;HaplotypeScore=9.4760;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.053;QD=22.47;ReadPosRankSum=1.687;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5146,582,0 chrXII 48721 . T C 1636 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.20;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1669,189,0 chrXII 48833 . T A 656 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.26;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:689,81,0 chrXII 49074 . T C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8574;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.127;QD=23.02;ReadPosRankSum=1.676;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2864,318,0 chrXII 49301 . T G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=167;Dels=0.00;FS=6.933;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.443;QD=20.24;ReadPosRankSum=2.361;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3380,387,0 chrXII 49346 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=152;Dels=0.00;FS=2.892;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.267;QD=21.22;ReadPosRankSum=2.353;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3259,378,0 chrXII 49413 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.23;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3554,387,0 chrXII 49420 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=22.15;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3610,402,0 chrXII 49452 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.76;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2937,321,0 chrXII 49459 . A G 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=0.337;QD=19.02;ReadPosRankSum=1.708;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2772,309,0 chrXII 49545 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=3.680;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.428;QD=22.27;ReadPosRankSum=1.713;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4053,447,0 chrXII 49638 . T C 2856 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.00;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2889,342,0 chrXII 49831 . T A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.57;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3386,381,0 chrXII 50192 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.3755;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.22;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3522,396,0 chrXII 50256 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=176;Dels=0.00;FS=4.276;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.677;QD=21.34;ReadPosRankSum=1.633;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3756,420,0 chrXII 50531 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=20.6890;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.93;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4794,543,0 chrXII 50921 . G A 4749.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.2118;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.99;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4749,549,0 chrXII 50984 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=4.393;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.516;QD=20.40;ReadPosRankSum=1.693;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3590,399,0 chrXII 51035 . C G 2926 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.46;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2959,348,0 chrXII 51069 . T C 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=197;Dels=0.00;FS=6.407;HaplotypeScore=12.8402;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.470;QD=22.39;ReadPosRankSum=2.425;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4410,486,0 chrXII 51125 . A G 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.6679;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.968;QD=21.47;ReadPosRankSum=1.716;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:1,212:217:99:4660,540,0 chrXII 51284 . G A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.91;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4353,474,0 chrXII 51489 . A G 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=3.176;HaplotypeScore=10.7377;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.343;QD=22.01;ReadPosRankSum=1.714;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4116,465,0 chrXII 51883 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.15;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1598,171,0 chrXII 51956 . A G 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;MQRankSum=0.780;QD=20.24;ReadPosRankSum=2.395;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1855,213,0 chrXII 52130 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.82;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3538,393,0 chrXII 52330 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.2410;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.78;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3507,384,0 chrXII 52409 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=110;Dels=0.00;FS=9.644;HaplotypeScore=12.6594;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.954;QD=22.04;ReadPosRankSum=2.918;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2457,276,0 chrXII 52489 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.15;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1746,198,0 chrXII 52504 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.37;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1657,177,0 chrXII 52553 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.43;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1361,150,0 chrXII 52714 . G C 1062 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.04;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1095,123,0 chrXII 52725 . T G 875 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.62;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:908,105,0 chrXII 52829 . A G 951 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=25.03;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:984,108,0 chrXII 52945 . A C 1221 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.04;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1254,144,0 chrXII 53075 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.40;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2622,282,0 chrXII 53089 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.61;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2661,288,0 chrXII 53554 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.70;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4145,468,0 chrXII 53575 . G A 3678.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.14;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3678,417,0 chrXII 53713 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.29;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3857,435,0 chrXII 54071 . A T 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=4.539;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.628;QD=23.92;ReadPosRankSum=1.656;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4354,471,0 chrXII 54226 . A G 4840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=228;Dels=0.00;FS=6.757;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.330;QD=21.23;ReadPosRankSum=2.417;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:4840,564,0 chrXII 54244 . T C 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=243;Dels=0.00;FS=2.933;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-2.013;QD=20.31;ReadPosRankSum=2.287;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:4936,546,0 chrXII 54574 . T C 9420.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=433;Dels=0.00;FS=14.032;HaplotypeScore=29.9488;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.167;QD=21.76;ReadPosRankSum=3.406;SB=-4.597e+03 GT:AD:DP:GQ:PL 1/1:4,427:433:99:9420,1062,0 chrXII 54652 . G A 8116.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.128;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=20.8724;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.962;QD=22.05;ReadPosRankSum=-0.533;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:2,364:368:99:8116,863,0 chrXII 54901 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.31;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3413,384,0 chrXII 55033 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.13;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3619,387,0 chrXII 55090 . A G 2871 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.6921;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.53;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2904,330,0 chrXII 55378 . C G 2179 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2212,249,0 chrXII 56536 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2767,300,0 chrXII 56722 . C G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6449;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.14;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3249,366,0 chrXII 56781 . G T 3072 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.93;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3105,345,0 chrXII 57868 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.4927;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.50;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3311,363,0 chrXII 58510 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3061,342,0 chrXII 59265 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.87;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2137,240,0 chrXII 59342 . A G 2178 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2211,243,0 chrXII 59513 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.25;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3586,396,0 chrXII 59584 . T C 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5511;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.694;QD=21.09;ReadPosRankSum=1.270;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1931,222,0 chrXII 60657 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.03;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2868,309,0 chrXII 60670 . C A 2447 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.87;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2480,276,0 chrXII 60852 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.58;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2191,234,0 chrXII 60873 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.57;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2313,249,0 chrXII 61099 . A G 2564 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.37;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2597,303,0 chrXII 61294 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.64;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2917,312,0 chrXII 61318 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.86;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2765,315,0 chrXII 61503 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.181;QD=23.85;ReadPosRankSum=1.693;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4221,480,0 chrXII 61657 . G T 4417.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.49;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4417,489,0 chrXII 61696 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.81;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4767,516,0 chrXII 61924 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.684;QD=21.68;ReadPosRankSum=1.636;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3155,357,0 chrXII 62362 . A G 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=137;Dels=0.00;FS=2.604;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.877;QD=19.51;ReadPosRankSum=2.395;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2706,303,0 chrXII 62806 . C G 2730 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.68;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2763,327,0 chrXII 62941 . A G 2716 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.73;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2749,321,0 chrXII 63403 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=145;Dels=0.00;FS=7.420;HaplotypeScore=11.8790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.280;QD=20.32;ReadPosRankSum=2.416;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2979,339,0 chrXII 63559 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.20;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2980,330,0 chrXII 63798 . G T 2392 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=89.1192;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.22;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2425,264,0 chrXII 63859 . C G 1619 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=19.27;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1652,186,0 chrXII 63864 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=19.87;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1722,186,0 chrXII 63886 . A T 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.478;QD=21.89;ReadPosRankSum=1.666;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2331,249,0 chrXII 63912 . T G 2202 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.17;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2235,255,0 chrXII 63918 . A G 2174 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.13;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2207,252,0 chrXII 64089 . A G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=5.819;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;MQRankSum=-1.045;QD=23.10;ReadPosRankSum=1.677;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2943,348,0 chrXII 64152 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.35;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2766,297,0 chrXII 64164 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=4.646;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.417;QD=20.70;ReadPosRankSum=1.656;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2890,327,0 chrXII 64284 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;MQRankSum=-0.767;QD=21.22;ReadPosRankSum=1.713;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3884,453,0 chrXII 64307 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=22.87;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4025,432,0 chrXII 64319 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=1;MQRankSum=-0.987;QD=20.63;ReadPosRankSum=1.692;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3569,396,0 chrXII 64614 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=3.930;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=0.157;QD=19.57;ReadPosRankSum=1.716;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4325,504,0 chrXII 64620 . A G 4460.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.56;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4460,501,0 chrXII 64683 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.8615;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=19.31;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4615,510,0 chrXII 64763 . G A 5481.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;QD=24.25;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5481,592,0 chrXII 64824 . A G 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=234;Dels=0.00;FS=2.971;HaplotypeScore=12.7348;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=1.449;QD=21.69;ReadPosRankSum=2.386;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5076,588,0 chrXII 64866 . C T 5363.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.9166;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=21.28;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5363,594,0 chrXII 65049 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.840;DP=173;Dels=0.01;FS=5.951;HaplotypeScore=18.0424;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.657;QD=20.68;ReadPosRankSum=0.414;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3578,408,0 chrXII 65485 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=18.32;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1407,162,0 chrXII 65517 . T C 779 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=11.98;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:96:812,96,0 chrXII 65523 . A T 726 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=10.84;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:84:759,84,0 chrXII 65606 . A G 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=92;Dels=0.00;FS=9.064;HaplotypeScore=5.9781;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.416;QD=15.84;ReadPosRankSum=3.301;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:4,87:92:99:1490,174,0 chrXII 65616 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=16.7548;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.56;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1891,207,0 chrXII 65695 . C A 3122 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3415;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.47;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3155,345,0 chrXII 65728 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.70;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3211,363,0 chrXII 65992 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.51;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4434,474,0 chrXII 66069 . T G 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=220;Dels=0.00;FS=3.234;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.419;QD=19.97;ReadPosRankSum=1.716;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4394,489,0 chrXII 66129 . C G 3686.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6435;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.50;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:3686,423,0 chrXII 66235 . A G 4666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.9741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.017;QD=22.33;ReadPosRankSum=1.649;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4666,519,0 chrXII 66534 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.67;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4071,456,0 chrXII 66595 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.654;DP=174;Dels=0.00;FS=7.749;HaplotypeScore=24.6824;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.105;QD=14.82;ReadPosRankSum=3.764;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:5,166:174:99:2611,294,0 chrXII 66633 . C T 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;DP=173;Dels=0.00;FS=43.679;HaplotypeScore=9.3554;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=2.587;QD=0.74;ReadPosRankSum=-5.901;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,34:173:99:158,0,1046 chrXII 66714 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2669;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.87;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4003,462,0 chrXII 66854 . T G 4726.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.68;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4726,534,0 chrXII 67209 . G A 4802.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.65;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4802,528,0 chrXII 67247 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.7646;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.690;QD=22.38;ReadPosRankSum=1.690;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3670,414,0 chrXII 67412 . A C 2749 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2782,312,0 chrXII 67604 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2848,309,0 chrXII 67726 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.014;QD=23.24;ReadPosRankSum=1.706;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3170,363,0 chrXII 67821 . C A 2992 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.19;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3025,327,0 chrXII 68071 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.0747;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.520;QD=21.98;ReadPosRankSum=1.227;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:4396,489,0 chrXII 68086 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.34;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4223,462,0 chrXII 68253 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=17.4782;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.69;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4221,456,0 chrXII 68368 . T A 2653 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.93;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2686,294,0 chrXII 68533 . G A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3729,402,0 chrXII 68671 . A G 3608.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.43;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3608,402,0 chrXII 69006 . T A 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=3.586;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.948;QD=20.18;ReadPosRankSum=1.682;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2798,318,0 chrXII 69090 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.377;DP=157;Dels=0.00;FS=3.480;HaplotypeScore=8.9511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.067;QD=23.23;ReadPosRankSum=-1.088;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3647,396,0 chrXII 69317 . T C 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.796;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.657;QD=21.33;ReadPosRankSum=1.682;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3019,354,0 chrXII 69569 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.72;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2618,288,0 chrXII 70044 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3987,429,0 chrXII 70180 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=155;Dels=0.00;FS=6.572;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.023;QD=21.82;ReadPosRankSum=2.418;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3382,375,0 chrXII 70244 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.11;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3834,414,0 chrXII 70541 . A T 1498 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.24;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1531,174,0 chrXII 71063 . C G 4684.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=22.5324;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.30;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4684,516,0 chrXII 71524 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.1631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3708,426,0 chrXII 71641 . C G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.17;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3414,387,0 chrXII 71722 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.6117;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.82;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3557,393,0 chrXII 72088 . C G 4087.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.58;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4087,462,0 chrXII 72448 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.67;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2189,252,0 chrXII 72460 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.94;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2286,249,0 chrXII 72502 . T C 2389 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.10;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2422,285,0 chrXII 72514 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.430;QD=18.41;ReadPosRankSum=1.680;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2482,285,0 chrXII 72811 . A C 2796 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.41;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2829,312,0 chrXII 72961 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.01;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2428,273,0 chrXII 72975 . T C 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.511;QD=17.02;ReadPosRankSum=1.704;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2126,240,0 chrXII 72987 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.12;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2242,243,0 chrXII 73171 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=20.65;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3613,387,0 chrXII 73176 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.14;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3464,390,0 chrXII 73290 . C A 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=3.214;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.302;QD=21.40;ReadPosRankSum=1.664;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3295,354,0 chrXII 73299 . A C 3079 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.66;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3112,345,0 chrXII 73549 . T G 4825.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.31;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4825,552,0 chrXII 73691 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.68;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4309,468,0 chrXII 73717 . T G 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.929;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.011;QD=22.69;ReadPosRankSum=1.712;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3925,438,0 chrXII 73852 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.71;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3627,393,0 chrXII 74146 . G T 2837 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.49;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2870,312,0 chrXII 74150 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.26;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2667,300,0 chrXII 74214 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.12;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2673,288,0 chrXII 74238 . A G 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=141;Dels=0.00;FS=7.913;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.096;QD=20.21;ReadPosRankSum=2.415;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2882,324,0 chrXII 74258 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.96;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2967,318,0 chrXII 74294 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3257;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.13;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3523,396,0 chrXII 74484 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.34;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2238,246,0 chrXII 74564 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.77;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2010,216,0 chrXII 74641 . T C 1317 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.39;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1350,153,0 chrXII 74681 . A G 1808 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.48;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1841,207,0 chrXII 74872 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.12;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3369,372,0 chrXII 75002 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.8004;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.905;QD=22.32;ReadPosRankSum=1.706;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3046,342,0 chrXII 75086 . A C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.613;QD=23.85;ReadPosRankSum=1.702;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2823,309,0 chrXII 75731 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.58;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2882,327,0 chrXII 75903 . C T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.42;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3560,393,0 chrXII 76022 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.029;QD=21.25;ReadPosRankSum=1.675;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3847,453,0 chrXII 76057 . G A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.87;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4048,441,0 chrXII 76249 . C A 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.141;QD=23.42;ReadPosRankSum=0.806;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4052,432,0 chrXII 76433 . T A 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=4.590;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.479;QD=22.18;ReadPosRankSum=1.634;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3161,348,0 chrXII 76603 . G T 2457 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.40;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2490,267,0 chrXII 76688 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2536,279,0 chrXII 76840 . T C 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.01;FS=4.942;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.089;QD=21.81;ReadPosRankSum=1.643;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1778,201,0 chrXII 76842 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=6.1226;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=23.05;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1923,207,0 chrXII 77035 . A G 514 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=17.72;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:547,63,0 chrXII 77139 . G A 572 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:25:66:605,66,0 chrXII 77520 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1791;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.44;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3375,363,0 chrXII 77584 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.53;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4349,483,0 chrXII 77626 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.717;DP=154;Dels=0.00;FS=2.460;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.480;QD=20.07;ReadPosRankSum=2.941;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3124,354,0 chrXII 77641 . C T 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.014;QD=22.85;ReadPosRankSum=1.591;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2843,309,0 chrXII 77743 . A C 1793 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.92;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1826,210,0 chrXII 77809 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=107;Dels=0.00;FS=2.952;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.058;QD=21.74;ReadPosRankSum=2.357;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2359,276,0 chrXII 77878 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=24.58;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2810,309,0 chrXII 77946 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.71;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2095,228,0 chrXII 77947 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.78;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2146,231,0 chrXII 78040 . A C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.150;QD=22.60;ReadPosRankSum=1.653;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2994,339,0 chrXII 78070 . A G 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.196;QD=22.65;ReadPosRankSum=1.704;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2842,315,0 chrXII 78130 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.20;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2280,249,0 chrXII 78156 . A C 2502 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.20;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2535,297,0 chrXII 78276 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.26;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3597,387,0 chrXII 79021 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.70;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3496,384,0 chrXII 79063 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.15;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3610,414,0 chrXII 79186 . T A 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=185;Dels=0.00;FS=7.204;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.826;QD=22.85;ReadPosRankSum=2.304;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4227,459,0 chrXII 79230 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=160;Dels=0.00;FS=7.805;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.503;QD=20.56;ReadPosRankSum=2.402;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,152:160:99:3289,369,0 chrXII 79239 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.7285;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=21.14;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3277,363,0 chrXII 79255 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.68;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3382,363,0 chrXII 79336 . G A 5337.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.9046;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.71;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5337,571,0 chrXII 79441 . G C 4898.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.20;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,227:231:99:4898,552,0 chrXII 79465 . A G 5050.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.4402;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.22;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5050,599,0 chrXII 79618 . C T 5487.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.1578;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.58;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5487,618,0 chrXII 79798 . G C 2687 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6355;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.16;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2720,327,0 chrXII 79830 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7592;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.76;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3217,348,0 chrXII 79900 . G T 2386 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2419,267,0 chrXII 79987 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1350,150,0 chrXII 80295 . T A 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.500;QD=22.78;ReadPosRankSum=1.694;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2083,225,0 chrXII 80407 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.12;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2855,312,0 chrXII 80439 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.00;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2103,225,0 chrXII 80469 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.24;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1895,213,0 chrXII 80488 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=18.31;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1974,219,0 chrXII 80532 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.497;DP=130;Dels=0.00;FS=5.424;HaplotypeScore=5.1427;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=1.598;QD=20.47;ReadPosRankSum=1.329;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2694,297,0 chrXII 80552 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.84;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2960,321,0 chrXII 80686 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=20.15;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1484,168,0 chrXII 80695 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=20.36;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1682,186,0 chrXII 80723 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=19.48;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1494,168,0 chrXII 80746 . A G 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=3.061;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;MQRankSum=-0.753;QD=16.39;ReadPosRankSum=2.386;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1295,147,0 chrXII 80755 . T C 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=72;Dels=0.00;FS=6.082;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;MQRankSum=-0.188;QD=15.76;ReadPosRankSum=2.381;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1168,132,0 chrXII 80794 . T A 865 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=15.73;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:898,99,0 chrXII 80805 . G A 822 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=16.78;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:855,96,0 chrXII 80818 . A G 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;MQRankSum=-0.693;QD=18.48;ReadPosRankSum=1.663;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,49:52:99:994,111,0 chrXII 80822 . G C 1030 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=19.07;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1063,120,0 chrXII 80880 . T G 919 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=19.98;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:952,108,0 chrXII 80899 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=19.24;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:995,108,0 chrXII 80906 . C A 901 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=18.02;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:934,102,0 chrXII 80916 . A G 894 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=17.53;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:927,108,0 chrXII 81004 . A G 901 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=21.45;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:934,105,0 chrXII 81010 . C T 880 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=20.95;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:913,102,0 chrXII 81024 . C T 786 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=18.28;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:819,93,0 chrXII 81096 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.95;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2265,246,0 chrXII 81147 . A G 2080 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.47;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2113,231,0 chrXII 81186 . G T 1782 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=66.5112;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.45;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1815,198,0 chrXII 81207 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.24;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1626,186,0 chrXII 81841 . C T 5633.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=18.2885;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.99;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5633,630,0 chrXII 82033 . A G 4920.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.2140;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.21;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:4920,555,0 chrXII 82168 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=149;Dels=0.00;FS=5.681;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.404;QD=20.89;ReadPosRankSum=2.774;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:3,144:149:99:3146,366,0 chrXII 82171 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=2.938;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.724;QD=20.80;ReadPosRankSum=2.385;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3194,363,0 chrXII 82288 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.71;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4020,462,0 chrXII 82460 . A G 4144.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.16;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4144,468,0 chrXII 82591 . T C 6400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=7.9595;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.655;QD=23.53;ReadPosRankSum=1.694;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:1,270:272:99:6400,711,0 chrXII 82618 . A G 5770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=250;Dels=0.00;FS=7.004;HaplotypeScore=9.8047;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.322;QD=23.08;ReadPosRankSum=2.370;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:2,246:250:99:5770,645,0 chrXII 82663 . G A 4389.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.62;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4389,474,0 chrXII 82757 . A G 4866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=217;Dels=0.00;FS=2.942;HaplotypeScore=12.4461;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.816;QD=22.42;ReadPosRankSum=2.393;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4866,546,0 chrXII 82792 . A G 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=210;Dels=0.00;FS=2.578;HaplotypeScore=17.6349;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.293;QD=20.47;ReadPosRankSum=2.928;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4299,495,0 chrXII 82969 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.3720;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.35;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4139,459,0 chrXII 83008 . C G 3173 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.4467;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.88;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3206,369,0 chrXII 83245 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.87;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3608,408,0 chrXII 83511 . A C 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=200;Dels=0.00;FS=6.963;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.792;QD=21.88;ReadPosRankSum=2.388;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4376,507,0 chrXII 83524 . C T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.28;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4500,492,0 chrXII 83596 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.62;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4110,456,0 chrXII 84031 . C T 2669 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.52;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2702,312,0 chrXII 84147 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=22.89;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2849,318,0 chrXII 84153 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=22.41;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2969,324,0 chrXII 84308 . T A 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;DP=196;Dels=0.00;FS=17.929;HaplotypeScore=4.8422;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;MQRankSum=1.733;QD=10.16;ReadPosRankSum=4.113;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:67,128:196:99:2024,126,0 chrXII 84309 . G A 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.126;DP=197;Dels=0.00;FS=17.706;HaplotypeScore=4.8422;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;MQRankSum=1.924;QD=10.20;ReadPosRankSum=4.345;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:69,128:197:99:2043,123,0 chrXII 84320 . T C 76.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.157;DP=179;Dels=0.00;FS=14.720;HaplotypeScore=85.8077;MLEAC=1;MLEAF=0.500;MQ=35.18;MQ0=0;MQRankSum=-1.058;QD=0.42;ReadPosRankSum=8.665;SB=-5.370e+02 GT:AD:DP:GQ:PL 0/1:98,79:179:99:106,0,1163 chrXII 84326 . C T 821.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.850;DP=165;Dels=0.02;FS=21.396;HaplotypeScore=85.8125;MLEAC=1;MLEAF=0.500;MQ=34.69;MQ0=0;MQRankSum=-0.667;QD=4.98;ReadPosRankSum=-9.661;SB=-6.250e+02 GT:AD:DP:GQ:PL 0/1:81,81:162:99:851,0,146 chrXII 84378 . T C 2020 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.7214;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=14.13;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2053,228,0 chrXII 84451 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.749;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.515;QD=17.06;ReadPosRankSum=2.959;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:3,169:172:99:2968,339,0 chrXII 84504 . G A 2274 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=19.60;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2307,261,0 chrXII 84629 . A G 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.802;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.626;QD=18.64;ReadPosRankSum=1.684;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1375,162,0 chrXII 84631 . T C 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.659;QD=19.85;ReadPosRankSum=1.683;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1462,165,0 chrXII 84883 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=157;Dels=0.00;FS=2.586;HaplotypeScore=14.1375;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.387;QD=21.20;ReadPosRankSum=2.903;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3328,378,0 chrXII 85096 . T C 5496.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.34;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:5496,627,0 chrXII 85270 . C G 5154.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.03;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5154,591,0 chrXII 85385 . G A 4835.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.0977;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=22.81;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4835,531,0 chrXII 85415 . T G 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=3.424;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.262;QD=20.09;ReadPosRankSum=1.680;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:4018,477,0 chrXII 85446 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.13;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4079,447,0 chrXII 85580 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=15.73;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3148,348,0 chrXII 85595 . T C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-1.264;QD=14.51;ReadPosRankSum=1.697;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:2950,348,0 chrXII 85625 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=14.67;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:2996,333,0 chrXII 85632 . T G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=-1.644;QD=13.46;ReadPosRankSum=1.697;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:2685,306,0 chrXII 85737 . T G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.74;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4369,498,0 chrXII 85799 . T C 4990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=245;Dels=0.00;FS=5.986;HaplotypeScore=15.8388;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.412;QD=20.37;ReadPosRankSum=2.963;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:4990,573,0 chrXII 85916 . T C 5728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=261;Dels=0.00;FS=2.983;HaplotypeScore=22.0979;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.794;QD=21.95;ReadPosRankSum=2.411;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:2,256:261:99:5728,654,0 chrXII 86081 . G A 4933.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.5389;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.38;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4933,552,0 chrXII 86087 . T C 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=4.104;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.127;QD=19.66;ReadPosRankSum=1.702;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,228:232:99:4562,542,0 chrXII 86291 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.09;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3778,426,0 chrXII 86330 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.71;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3756,417,0 chrXII 86360 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.02;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3721,429,0 chrXII 86369 . A T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.27;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3914,429,0 chrXII 86701 . A G 913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.817;QD=17.23;ReadPosRankSum=2.357;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:946,108,0 chrXII 86764 . A T 718 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.96;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:81:751,81,0 chrXII 86783 . T G 788 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=16.08;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:821,93,0 chrXII 86879 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.84;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1693,189,0 chrXII 87286 . C T 928 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.85;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:961,105,0 chrXII 87288 . C T 928 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.87;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:961,108,0 chrXII 87317 . C A 1664 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.35;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1697,189,0 chrXII 87340 . A G 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=110;Dels=0.00;FS=6.061;HaplotypeScore=7.3645;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.270;QD=18.32;ReadPosRankSum=1.637;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2048,231,0 chrXII 87470 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.4705;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.281;QD=23.51;ReadPosRankSum=2.409;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2854,324,0 chrXII 87559 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.99;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4437,486,0 chrXII 87580 . C T 4602.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.02;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4602,501,0 chrXII 87661 . C G 4823.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.75;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4823,572,0 chrXII 87687 . T C 4446.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.79;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4446,495,0 chrXII 87824 . G T 4919.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.99;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:4919,543,0 chrXII 87825 . A G 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=260;Dels=0.00;FS=9.338;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.872;QD=18.35;ReadPosRankSum=2.934;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:3,256:260:99:4770,549,0 chrXII 88002 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=172;Dels=0.00;FS=2.435;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.561;QD=21.31;ReadPosRankSum=2.889;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3665,408,0 chrXII 88069 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5318;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.228;QD=18.80;ReadPosRankSum=2.402;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2966,333,0 chrXII 88362 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1279,141,0 chrXII 88422 . A T 2123 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.40;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2156,237,0 chrXII 88452 . G A 2424 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.31;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2457,267,0 chrXII 88557 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.94;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3556,405,0 chrXII 89489 . A G 5765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=256;Dels=0.00;FS=12.497;HaplotypeScore=14.1092;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.374;QD=22.52;ReadPosRankSum=3.426;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:4,249:256:99:5765,657,0 chrXII 89561 . C T 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.7447;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=1.364;QD=23.00;ReadPosRankSum=0.393;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4760,522,0 chrXII 89579 . C T 4007.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.6733;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.78;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,178:184:99:4007,441,0 chrXII 90629 . C G 3732.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=21.3522;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.85;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:3732,420,0 chrXII 90952 . G A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.12;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4693,513,0 chrXII 91004 . A G 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=4.026;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.565;QD=23.29;ReadPosRankSum=1.714;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4378,489,0 chrXII 91022 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=166;Dels=0.00;FS=18.263;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.037;QD=21.68;ReadPosRankSum=3.375;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3599,408,0 chrXII 91140 . C T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.61;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4503,489,0 chrXII 91268 . T C 2385 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.08;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2418,267,0 chrXII 91295 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.05;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2776,300,0 chrXII 91389 . T C 661 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.32;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:694,78,0 chrXII 91461 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=19.34;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1155,129,0 chrXII 91483 . T C 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;MQRankSum=1.444;QD=15.07;ReadPosRankSum=2.385;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1178,135,0 chrXII 91486 . T G 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=1.125;QD=15.79;ReadPosRankSum=2.388;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1296,141,0 chrXII 91553 . A G 521 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=7.24;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,71:72:63:554,63,0 chrXII 91626 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.88;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1390,150,0 chrXII 91644 . A G 1787 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.62;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1820,201,0 chrXII 91951 . T C 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=102;Dels=0.00;FS=3.054;HaplotypeScore=6.5854;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-2.182;QD=20.57;ReadPosRankSum=2.401;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2131,249,0 chrXII 91967 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.08;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1909,216,0 chrXII 91992 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.29;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1885,207,0 chrXII 92014 . A C 1828 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.87;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1861,207,0 chrXII 92258 . A T 2501 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.53;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2534,273,0 chrXII 92468 . A T 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=3.382;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.511;QD=22.48;ReadPosRankSum=1.704;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2775,303,0 chrXII 92601 . A C 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DP=91;Dels=0.00;FS=2.100;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=3.355;QD=20.80;ReadPosRankSum=-2.454;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:4,84:91:99:1926,225,0 chrXII 92789 . G T 3199 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.06;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3232,360,0 chrXII 92960 . A T 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.365;QD=22.38;ReadPosRankSum=2.378;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3121,319,0 chrXII 93301 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.26;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2904,327,0 chrXII 93488 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.76;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3241,357,0 chrXII 93654 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.41;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4073,444,0 chrXII 93814 . G C 4780.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.76;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4780,558,0 chrXII 93920 . G A 4857.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=23.24;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4857,543,0 chrXII 93954 . G A 5021.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.35;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5021,564,0 chrXII 94031 . A G 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.127;QD=18.16;ReadPosRankSum=1.419;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3248,339,0 chrXII 94032 . A T 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.681;QD=19.06;ReadPosRankSum=1.654;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3392,366,0 chrXII 94044 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.67;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3342,360,0 chrXII 94172 . A G 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=3.099;HaplotypeScore=12.1476;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.367;QD=22.34;ReadPosRankSum=1.715;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4446,522,0 chrXII 94212 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8865;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.43;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4240,489,0 chrXII 94502 . T A 4844.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.84;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4844,522,0 chrXII 94565 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.47;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4209,453,0 chrXII 94617 . T C 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.875;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.265;QD=21.46;ReadPosRankSum=1.684;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3166,360,0 chrXII 94628 . T G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=147;Dels=0.00;FS=9.956;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.500;QD=21.57;ReadPosRankSum=2.911;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3204,357,0 chrXII 94669 . A G 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=181;Dels=0.00;FS=7.184;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.607;QD=23.28;ReadPosRankSum=2.409;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4213,462,0 chrXII 94728 . C A 4651.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=23.73;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4651,501,0 chrXII 94846 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.33;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3205,348,0 chrXII 94920 . C T 5479.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.5397;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=23.72;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5479,600,0 chrXII 95188 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.83;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1991,222,0 chrXII 95421 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=5.70;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrXII 95555 . G C 2593 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.15;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2626,297,0 chrXII 95641 . T A 2707 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.30;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2740,303,0 chrXII 95935 . A G 2710 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.379;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.7017;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=60;MQRankSum=-0.298;QD=12.49;ReadPosRankSum=0.430;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:39,178:217:99:2743,315,0 chrXII 95937 . C A 2834 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.6200;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=59;QD=13.12;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:38,177:215:99:2867,315,0 chrXII 95938 . A G 2748 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.6200;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=58;MQRankSum=-1.687;QD=12.84;ReadPosRankSum=1.710;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:39,174:213:99:2781,315,0 chrXII 95944 . C T 2655 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=231;Dels=0.00;FS=2.571;HaplotypeScore=3.9130;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=51;MQRankSum=1.933;QD=11.49;ReadPosRankSum=2.961;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:38,193:231:99:2688,303,0 chrXII 95945 . T C 2602 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.157;DP=232;Dels=0.00;FS=4.099;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=49;MQRankSum=-0.545;QD=11.22;ReadPosRankSum=4.157;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:41,191:232:99:2635,303,0 chrXII 95992 . G A 2911 filter AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=21;QD=12.18;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:18,221:239:99:2944,333,0 chrXII 96004 . C T 2646 filter AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=11;QD=12.48;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:11,201:212:99:2679,291,0 chrXII 96010 . A G 2234 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=206;Dels=0.00;FS=11.040;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=9;MQRankSum=-1.362;QD=10.84;ReadPosRankSum=2.964;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:12,194:206:99:2267,264,0 chrXII 96022 . G A 1962 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=12;QD=10.55;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:9,176:186:99:1995,219,0 chrXII 96025 . G A 2017 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=14;QD=11.08;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:10,172:182:99:2050,222,0 chrXII 96028 . G A 2026 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=15;QD=11.38;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:11,167:178:99:2059,225,0 chrXII 96034 . A G 1849 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=181;Dels=0.00;FS=7.360;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=22;MQRankSum=0.630;QD=10.22;ReadPosRankSum=2.418;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:17,163:181:99:1882,219,0 chrXII 96040 . A G 1724 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=179;Dels=0.00;FS=3.908;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=29;MQRankSum=-1.363;QD=9.63;ReadPosRankSum=1.709;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:17,162:179:99:1757,198,0 chrXII 96151 . G A 2808 filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.29;MQ0=73;QD=14.40;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:48,147:195:99:2841,312,0 chrXII 96166 . A G 2972 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=193;Dels=0.00;FS=5.351;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=48;MQRankSum=-1.275;QD=15.40;ReadPosRankSum=1.708;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:38,154:193:99:3005,351,0 chrXII 96169 . G A 3150 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.01;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=43;QD=16.07;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:33,162:195:99:3183,351,0 chrXII 96451 . T C 1306 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.991;DP=159;Dels=0.00;FS=61.161;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=19.49;MQ0=75;MQRankSum=4.148;QD=8.21;ReadPosRankSum=-2.473;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:51,108:159:64:1339,64,0 chrXII 96472 . G A 1177 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.49;MQ0=84;QD=7.36;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:1210,135,0 chrXII 96514 . A G 212.01 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=11.52;MQ0=71;QD=2.28;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,90:93:27:245,27,0 chrXII 97099 . G A 1885.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.503;DP=288;Dels=0.00;FS=352.206;HaplotypeScore=33.8244;MLEAC=1;MLEAF=0.500;MQ=35.65;MQ0=7;MQRankSum=11.683;QD=6.55;ReadPosRankSum=-1.701;SB=-5.680e+02 GT:AD:DP:GQ:PL 0/1:139,149:288:99:1915,0,1931 chrXII 97108 . C T 1348.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;DP=249;Dels=0.00;FS=403.592;HaplotypeScore=13.0025;MLEAC=1;MLEAF=0.500;MQ=34.32;MQ0=7;MQRankSum=10.369;QD=5.41;ReadPosRankSum=0.441;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:131,117:249:99:1378,0,1966 chrXII 97129 . G A 991.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;DP=259;Dels=0.00;FS=408.204;HaplotypeScore=8.6988;MLEAC=1;MLEAF=0.500;MQ=30.94;MQ0=7;MQRankSum=11.091;QD=3.83;ReadPosRankSum=-0.845;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:129,130:259:99:1021,0,1888 chrXII 97147 . G A 905.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.404;DP=241;Dels=0.00;FS=340.659;HaplotypeScore=11.7755;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=8;MQRankSum=11.866;QD=3.76;ReadPosRankSum=-2.281;SB=-4.910e+02 GT:AD:DP:GQ:PL 0/1:102,139:241:99:935,0,1412 chrXII 97153 . G T 899.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.765;DP=240;Dels=0.00;FS=346.095;HaplotypeScore=14.1415;MLEAC=1;MLEAF=0.500;MQ=28.08;MQ0=8;MQRankSum=12.714;QD=3.75;ReadPosRankSum=-2.535;SB=-6.330e+02 GT:AD:DP:GQ:PL 0/1:94,146:240:99:929,0,1231 chrXII 97159 . G A 1195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DP=248;Dels=0.00;FS=298.306;HaplotypeScore=13.2293;MLEAC=1;MLEAF=0.500;MQ=29.64;MQ0=8;MQRankSum=12.323;QD=4.82;ReadPosRankSum=-3.289;SB=-8.790e+02 GT:AD:DP:GQ:PL 0/1:84,164:248:99:1225,0,1027 chrXII 97171 . A G 2026.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.169;DP=265;Dels=0.00;FS=239.332;HaplotypeScore=20.0955;MLEAC=1;MLEAF=0.500;MQ=35.59;MQ0=8;MQRankSum=11.783;QD=7.65;ReadPosRankSum=-3.081;SB=-1.287e+03 GT:AD:DP:GQ:PL 0/1:69,195:265:99:2056,0,698 chrXII 97517 . A G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.883;QD=21.49;ReadPosRankSum=2.377;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2956,330,0 chrXII 97559 . T C 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=129;Dels=0.00;FS=8.950;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.797;QD=19.22;ReadPosRankSum=2.373;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2512,285,0 chrXII 97572 . T C 2298 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4785;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.09;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2331,264,0 chrXII 97599 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.07;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2341,264,0 chrXII 97654 . A C 2302 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.13;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2335,267,0 chrXII 97828 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1984;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.69;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1978,228,0 chrXII 97951 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.59;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1495,162,0 chrXII 97953 . A G 1462 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.03;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1495,165,0 chrXII 97987 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.97;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2030,228,0 chrXII 98018 . T C 2198 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.98;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2231,249,0 chrXII 98056 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.364;QD=22.82;ReadPosRankSum=2.410;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2885,327,0 chrXII 98431 . C T 4955.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.3059;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.71;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4955,552,0 chrXII 98459 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=184;Dels=0.00;FS=5.700;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-2.089;QD=20.76;ReadPosRankSum=2.928;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:3,179:184:99:3819,441,0 chrXII 98471 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=181;Dels=0.00;FS=15.278;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.439;QD=21.83;ReadPosRankSum=3.344;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:3951,432,0 chrXII 98655 . G A 4778.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.38;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4778,522,0 chrXII 99470 . G A 6080.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.0871;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.27;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6080,699,0 chrXII 99557 . C T 6877.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.8838;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.77;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6877,777,0 chrXII 99587 . A G 6364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=296;Dels=0.00;FS=10.104;HaplotypeScore=15.4859;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.052;QD=21.50;ReadPosRankSum=2.942;SB=-3.493e+03 GT:AD:DP:GQ:PL 1/1:3,289:296:99:6364,749,0 chrXII 99619 . G T 6781.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=12.4598;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.19;SB=-3.926e+03 GT:AD:DP:GQ:PL 1/1:0,317:320:99:6781,741,0 chrXII 99653 . A G 7066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=358;Dels=0.00;FS=9.104;HaplotypeScore=17.0774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.450;QD=19.74;ReadPosRankSum=3.378;SB=-4.208e+03 GT:AD:DP:GQ:PL 1/1:4,350:358:99:7066,836,0 chrXII 100126 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.70;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2203,237,0 chrXII 100150 . C G 2015 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.35;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2048,228,0 chrXII 100366 . C A 2578 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.22;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2611,282,0 chrXII 100389 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.98;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2791,294,0 chrXII 100544 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=171.9375;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.06;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2920,318,0 chrXII 100583 . T G 1922 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.67;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1955,216,0 chrXII 100678 . A G 3977.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.93;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3977,453,0 chrXII 100682 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=1.149;QD=21.06;ReadPosRankSum=1.677;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4001,456,0 chrXII 100762 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8667;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.93;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2564,279,0 chrXII 100782 . C A 3058 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3517;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.38;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,138:143:99:3091,333,0 chrXII 101108 . G C 4452.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.72;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4452,495,0 chrXII 101198 . G A 5936.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=19.4151;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.15;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5936,645,0 chrXII 101321 . T C 5057.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.43;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5057,564,0 chrXII 101330 . T C 4703.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.45;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4703,522,0 chrXII 101399 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.2178;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.964;QD=18.50;ReadPosRankSum=1.715;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:3756,438,0 chrXII 101560 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=200;Dels=0.00;FS=3.665;HaplotypeScore=6.5350;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.143;QD=19.88;ReadPosRankSum=1.697;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3975,465,0 chrXII 101577 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.0971;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.90;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4179,456,0 chrXII 101729 . A T 4710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=200;Dels=0.00;FS=9.772;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.683;QD=23.55;ReadPosRankSum=2.915;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4710,516,0 chrXII 101783 . G A 4625.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.24;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4625,498,0 chrXII 101803 . A G 4140.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.38;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4140,468,0 chrXII 101965 . T G 3716.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.2235;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.52;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3716,408,0 chrXII 102272 . A G 2836 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.48;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2869,321,0 chrXII 102371 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3611,387,0 chrXII 102471 . T G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4258;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.442;QD=18.68;ReadPosRankSum=1.509;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2929,333,0 chrXII 102476 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.37;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2972,351,0 chrXII 103512 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.73;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3635,393,0 chrXII 103584 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.61;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3058,357,0 chrXII 103640 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=19.65;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2823,303,0 chrXII 103648 . G A 2700 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=18.62;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2733,294,0 chrXII 103670 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=18.16;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2666,300,0 chrXII 103694 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=14.87;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2189,237,0 chrXII 103700 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=3.190;HaplotypeScore=4.6121;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=-0.211;QD=14.57;ReadPosRankSum=1.709;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2189,246,0 chrXII 103806 . A G 3663.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5564;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.04;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3663,417,0 chrXII 104406 . T G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=4.594;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.337;QD=21.86;ReadPosRankSum=1.708;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3181,360,0 chrXII 104468 . A T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.98;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4316,474,0 chrXII 105183 . C T 4953.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.40;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4953,532,0 chrXII 105266 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.600;QD=20.87;ReadPosRankSum=1.699;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2204,246,0 chrXII 105323 . T C 1961 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1994,219,0 chrXII 105420 . A G 333 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.773;QD=10.09;ReadPosRankSum=2.301;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:2,31:33:42:366,42,0 chrXII 106427 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.49;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3041,336,0 chrXII 106804 . G A 3319.01 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.24;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3319,357,0 chrXII 106805 . G A 3316.01 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=20.47;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3316,357,0 chrXII 106808 . A G 3220.05 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=3.038;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-1.136;QD=20.00;ReadPosRankSum=2.311;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3253,363,0 chrXII 106844 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=3.398;HaplotypeScore=13.0582;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.676;QD=20.65;ReadPosRankSum=1.648;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3387,375,0 chrXII 106919 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.978;QD=22.57;ReadPosRankSum=1.691;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3882,450,0 chrXII 106973 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.547;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.027;QD=18.64;ReadPosRankSum=1.712;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3257,384,0 chrXII 106982 . T A 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=186;Dels=0.00;FS=5.800;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.141;QD=18.85;ReadPosRankSum=2.865;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3507,384,0 chrXII 107111 . G A 5536.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.0641;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.07;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5536,597,0 chrXII 107151 . G T 5408.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=20.1788;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.01;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5408,606,0 chrXII 107239 . G A 5746.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=17.4985;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.62;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5746,624,0 chrXII 107406 . G A 5053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.959;DP=216;Dels=0.00;FS=4.632;HaplotypeScore=14.7894;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.056;QD=23.39;ReadPosRankSum=1.023;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5053,526,0 chrXII 107453 . G A 5299.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.6072;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.94;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5299,591,0 chrXII 107894 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.65;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2800,330,0 chrXII 107971 . T C 2761 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.09;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2794,318,0 chrXII 108098 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7759;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;MQRankSum=0.994;QD=20.20;ReadPosRankSum=1.704;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2497,276,0 chrXII 108155 . T G 2637 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.35;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2670,294,0 chrXII 108813 . G A 6268.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.11;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:6268,679,0 chrXII 109073 . T A 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=102;Dels=0.00;FS=5.614;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.272;QD=17.99;ReadPosRankSum=1.630;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1868,204,0 chrXII 109155 . A G 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=3.726;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.790;QD=22.20;ReadPosRankSum=1.704;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2830,315,0 chrXII 109244 . A G 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=5.836;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.339;QD=24.51;ReadPosRankSum=1.582;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2288,252,0 chrXII 109375 . G A 2106 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=17.70;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2139,237,0 chrXII 109400 . A G 1892 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=16.89;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1925,216,0 chrXII 109403 . A C 1734 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=15.08;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1767,198,0 chrXII 109409 . T C 1851 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=16.38;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1884,207,0 chrXII 109427 . A T 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=0.518;QD=15.74;ReadPosRankSum=1.703;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1874,213,0 chrXII 109496 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=20.33;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2960,324,0 chrXII 109497 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=20.42;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2974,327,0 chrXII 109677 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=22.77;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3438,375,0 chrXII 109707 . T A 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=5.679;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.163;QD=21.20;ReadPosRankSum=1.667;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3371,375,0 chrXII 109729 . A C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.579;QD=18.07;ReadPosRankSum=2.386;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2834,336,0 chrXII 109736 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.59;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2834,315,0 chrXII 109886 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.70;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2462,267,0 chrXII 110400 . A G 5149.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.9271;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.39;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5149,582,0 chrXII 110463 . C T 4926.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.0265;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.32;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:4926,537,0 chrXII 110481 . A G 4980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=244;Dels=0.00;FS=6.914;HaplotypeScore=12.8105;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.881;QD=20.41;ReadPosRankSum=2.429;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:2,239:244:99:4980,555,0 chrXII 110610 . A T 5424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=243;Dels=0.00;FS=2.966;HaplotypeScore=15.9319;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.167;QD=22.32;ReadPosRankSum=2.389;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:5424,594,0 chrXII 110807 . A G 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.313;QD=20.85;ReadPosRankSum=1.695;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,187:193:99:4024,459,0 chrXII 110958 . G A 4979.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=18.6853;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.33;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4979,540,0 chrXII 110997 . C T 4933.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.9028;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.94;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4933,534,0 chrXII 111070 . C T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.15;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4978,543,0 chrXII 111092 . A G 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.574;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=1.364;QD=20.98;ReadPosRankSum=1.796;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4175,427,0 chrXII 111105 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.852;DP=204;Dels=0.00;FS=7.956;HaplotypeScore=10.6452;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.050;QD=17.63;ReadPosRankSum=2.324;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:5,198:204:99:3596,381,0 chrXII 111174 . A T 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.919;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=24.7790;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=2.169;QD=21.11;ReadPosRankSum=1.999;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:2,243:245:99:5172,551,0 chrXII 111246 . G A 5212.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=19.3462;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.47;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5212,567,0 chrXII 111423 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.917;QD=18.99;ReadPosRankSum=1.709;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2938,327,0 chrXII 111480 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.25;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3528,381,0 chrXII 111638 . C G 3136 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.33;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3169,354,0 chrXII 111735 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=1.490;QD=24.55;ReadPosRankSum=1.705;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3225,357,0 chrXII 111778 . T G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=128;Dels=0.00;FS=3.295;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=1.210;QD=22.69;ReadPosRankSum=1.622;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2937,333,0 chrXII 111878 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.03;FS=0.000;HaplotypeScore=36.3864;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.69;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3033,330,0 chrXII 111976 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=122;Dels=0.00;FS=6.349;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=41.32;MQ0=0;MQRankSum=-1.925;QD=22.59;ReadPosRankSum=2.409;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2789,306,0 chrXII 111977 . C T 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.092;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;MQRankSum=-0.946;QD=22.11;ReadPosRankSum=1.703;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2664,271,0 chrXII 112012 . T A 843 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=15.61;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:876,96,0 chrXII 112031 . T C 639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=6.748;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;MQRankSum=-2.235;QD=9.26;ReadPosRankSum=2.379;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:78:672,78,0 chrXII 112061 . T C 1750 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=4.107;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=-0.988;QD=14.46;ReadPosRankSum=1.675;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1783,207,0 chrXII 112063 . G A 1880 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=15.16;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:1913,213,0 chrXII 112068 . A G 2073 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.32;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2106,237,0 chrXII 112137 . C A 2917 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=20.69;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2950,321,0 chrXII 112192 . A G 880 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=12.94;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:913,105,0 chrXII 112202 . T A 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=75;Dels=0.01;FS=2.620;HaplotypeScore=4.8643;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;MQRankSum=-2.404;QD=10.89;ReadPosRankSum=2.876;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:3,70:74:96:850,96,0 chrXII 112204 . T C 794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.066;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.4430;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;MQRankSum=-2.002;QD=10.31;ReadPosRankSum=2.322;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:93:827,93,0 chrXII 112335 . C A 2205 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=22.97;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2238,249,0 chrXII 112339 . C G 2008 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=22.56;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2041,234,0 chrXII 112353 . A G 2223 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;QD=23.16;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2256,258,0 chrXII 112401 . C T 1917 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=22.03;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1950,231,0 chrXII 112403 . C A 1998 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=22.45;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2031,234,0 chrXII 112405 . A G 1955 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=21.02;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1988,237,0 chrXII 112468 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=5.156;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;MQRankSum=0.000;QD=20.09;ReadPosRankSum=1.644;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2424,276,0 chrXII 112519 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=17.41;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2140,243,0 chrXII 112549 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=15.41;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1482,171,0 chrXII 112555 . T C 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=90;Dels=0.00;FS=7.694;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;MQRankSum=-0.623;QD=13.74;ReadPosRankSum=2.394;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1270,153,0 chrXII 112580 . C A 863 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=13.92;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:896,108,0 chrXII 112592 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=15.24;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:871,105,0 chrXII 112609 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;QD=16.59;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:929,111,0 chrXII 112615 . G C 873 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=15.87;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:906,111,0 chrXII 112652 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;QD=15.41;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1435,162,0 chrXII 112657 . T C 1282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=2.845;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=1.542;QD=13.49;ReadPosRankSum=2.398;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1315,156,0 chrXII 112663 . C T 1409 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;QD=14.09;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1442,165,0 chrXII 112689 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.5718;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=14.11;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1895,210,0 chrXII 112695 . T C 1732 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.4664;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=0.662;QD=12.74;ReadPosRankSum=1.656;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:1765,201,0 chrXII 112704 . G A 2010 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=13.86;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2043,222,0 chrXII 112705 . G T 1924 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=13.00;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1957,222,0 chrXII 112710 . G A 2069 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=13.35;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2102,231,0 chrXII 112795 . C A 1689 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=15.93;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1722,195,0 chrXII 112796 . G A 1669 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=15.90;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1702,192,0 chrXII 112804 . C T 1597 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=13.89;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1630,189,0 chrXII 112814 . T C 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=136;Dels=0.00;FS=2.413;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;MQRankSum=-1.694;QD=12.39;ReadPosRankSum=3.304;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:4,132:136:99:1718,207,0 chrXII 112823 . A T 2105 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=14.03;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2138,243,0 chrXII 112888 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=21.11;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3609,402,0 chrXII 113003 . T C 2956 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=21.11;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2989,336,0 chrXII 113056 . T C 2605 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=20.67;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2638,315,0 chrXII 113064 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=21.51;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2915,315,0 chrXII 113142 . C T 2217 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=19.97;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2250,249,0 chrXII 113145 . T C 2148 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=106;Dels=0.00;FS=2.995;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=-0.360;QD=20.26;ReadPosRankSum=2.403;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2181,249,0 chrXII 113146 . G A 2224 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=20.79;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2257,249,0 chrXII 113209 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=17.27;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1933,207,0 chrXII 113215 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=18.18;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1960,213,0 chrXII 113252 . T C 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=111;Dels=0.00;FS=5.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-0.827;QD=17.92;ReadPosRankSum=2.882;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2022,231,0 chrXII 113263 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=17.08;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2049,222,0 chrXII 113367 . G C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.04;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3917,438,0 chrXII 113404 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.10;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3977,429,0 chrXII 113425 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.676;QD=20.90;ReadPosRankSum=1.708;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3021,354,0 chrXII 113466 . C G 2987 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.78;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3020,339,0 chrXII 113758 . T C 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.160;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.527;QD=22.72;ReadPosRankSum=1.703;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2714,303,0 chrXII 113903 . G A 2811 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.96;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2844,324,0 chrXII 113989 . A G 3162 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.59;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3195,369,0 chrXII 114107 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.265;QD=22.46;ReadPosRankSum=1.658;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3245,366,0 chrXII 114144 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.433;QD=23.05;ReadPosRankSum=1.705;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3007,336,0 chrXII 114242 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.070;DP=124;Dels=0.00;FS=7.697;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.430;QD=19.19;ReadPosRankSum=2.370;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2413,270,0 chrXII 114659 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.51;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3287,363,0 chrXII 114724 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.70;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4396,495,0 chrXII 115234 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=123;Dels=0.00;FS=6.892;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.213;QD=22.23;ReadPosRankSum=2.389;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2767,291,0 chrXII 115378 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5380;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.96;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3262,366,0 chrXII 115422 . C G 3441.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8320;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.23;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3441,384,0 chrXII 116205 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.74;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1784,201,0 chrXII 116251 . G C 1471 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.61;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1504,165,0 chrXII 116274 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.07;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1334,150,0 chrXII 116312 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=16.13;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1307,147,0 chrXII 116314 . A G 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=0.046;QD=17.04;ReadPosRankSum=1.687;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1328,150,0 chrXII 116328 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=16.19;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1280,147,0 chrXII 116396 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.24;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1630,180,0 chrXII 116401 . A T 1630 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.64;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1663,180,0 chrXII 116599 . T A 2308 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.37;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2341,252,0 chrXII 116613 . G T 2174 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.32;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2207,249,0 chrXII 116647 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.84;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2479,276,0 chrXII 116734 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.37;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2740,297,0 chrXII 116824 . T G 2474 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.45;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2507,291,0 chrXII 116935 . A T 2796 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.11;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2829,315,0 chrXII 116960 . A G 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.049;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.966;QD=20.81;ReadPosRankSum=1.701;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2405,267,0 chrXII 116980 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.15;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2159,243,0 chrXII 117154 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.67;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3026,330,0 chrXII 117391 . G C 2707 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.90;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2740,315,0 chrXII 117478 . C T 3054 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.6850;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.13;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3087,336,0 chrXII 117481 . C T 2983 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.10;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3016,339,0 chrXII 117484 . C A 3009 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.46;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3042,333,0 chrXII 117535 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.319;QD=22.14;ReadPosRankSum=1.704;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2823,306,0 chrXII 118243 . T A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.66;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3667,390,0 chrXII 118322 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3535,393,0 chrXII 118518 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4558,495,0 chrXII 118640 . G A 5192.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.5516;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.72;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5192,561,0 chrXII 118658 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.8171;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.164;QD=22.32;ReadPosRankSum=1.714;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4352,492,0 chrXII 118865 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.44;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1855,204,0 chrXII 119110 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.80;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4077,447,0 chrXII 119140 . T G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.42;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3934,450,0 chrXII 119171 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1320;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.23;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3053,330,0 chrXII 119291 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.504;QD=23.21;ReadPosRankSum=1.656;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4248,483,0 chrXII 119330 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=175;Dels=0.00;FS=2.582;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.023;QD=22.61;ReadPosRankSum=2.913;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3956,441,0 chrXII 119524 . G T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.41;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3793,414,0 chrXII 120550 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3896,432,0 chrXII 120592 . A G 4216.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.29;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4216,468,0 chrXII 121057 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.84;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2847,312,0 chrXII 121160 . A G 2320 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.43;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2353,261,0 chrXII 121203 . T A 2030 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.52;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2063,225,0 chrXII 121206 . T G 1981 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.01;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2014,222,0 chrXII 121537 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.645;DP=144;Dels=0.00;FS=7.925;HaplotypeScore=7.0426;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.284;QD=21.60;ReadPosRankSum=3.765;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:5,139:144:99:3144,357,0 chrXII 121567 . T A 2355 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.79;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2388,261,0 chrXII 121719 . A G 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=94;Dels=0.00;FS=2.685;HaplotypeScore=22.6479;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.528;QD=15.67;ReadPosRankSum=2.396;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:2,90:94:99:1506,174,0 chrXII 121811 . T G 1890 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=22.77;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1923,210,0 chrXII 121973 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.855;DP=51;Dels=0.02;FS=2.260;HaplotypeScore=292.6992;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;MQRankSum=1.480;QD=0.41;ReadPosRankSum=-2.481;SB=-1.276e+01 GT:AD:DP:GQ:PL 1/1:46,3:50:6:52,6,0 chrXII 122034 . A C 148.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;DP=83;Dels=0.00;FS=14.335;HaplotypeScore=38.0671;MLEAC=1;MLEAF=0.500;MQ=46.68;MQ0=0;MQRankSum=2.668;QD=1.78;ReadPosRankSum=5.014;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:32,50:83:64:178,0,64 chrXII 122098 . A G 2306 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.77;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2339,255,0 chrXII 122138 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=80;Dels=0.00;FS=5.406;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.089;QD=21.76;ReadPosRankSum=2.912;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1774,198,0 chrXII 122353 . T C 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.614;DP=128;Dels=0.00;FS=5.442;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.205;QD=22.88;ReadPosRankSum=2.945;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2962,333,0 chrXII 122840 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=175;Dels=0.00;FS=6.043;HaplotypeScore=16.0313;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.890;QD=20.90;ReadPosRankSum=2.960;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:3658,417,0 chrXII 122930 . A G 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=176;Dels=0.00;FS=4.319;HaplotypeScore=13.2960;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.292;QD=23.64;ReadPosRankSum=1.712;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:4161,462,0 chrXII 123453 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=21.73;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3825,411,0 chrXII 123487 . C G 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.755;DP=185;Dels=0.00;FS=5.619;HaplotypeScore=8.4322;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=1.953;QD=11.53;ReadPosRankSum=-3.774;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:41,142:185:99:2166,243,0 chrXII 123668 . G A 4099.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.2199;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.04;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4099,450,0 chrXII 123974 . T C 3003 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.08;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3036,351,0 chrXII 123990 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.48;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2655,309,0 chrXII 124013 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.38;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2765,318,0 chrXII 124317 . G C 4414.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.2341;MLEAC=2;MLEAF=1.00;MQ=60.92;MQ0=0;QD=23.60;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4414,495,0 chrXII 124421 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=213;Dels=0.00;FS=3.652;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.256;QD=18.00;ReadPosRankSum=1.666;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:3834,435,0 chrXII 124596 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.523;QD=18.91;ReadPosRankSum=1.691;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3228,366,0 chrXII 124642 . G T 3139 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6308;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.36;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3172,348,0 chrXII 126014 . A G 2794 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.4601;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.66;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2827,330,0 chrXII 126853 . A G 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=236;Dels=0.00;FS=3.517;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.600;QD=21.57;ReadPosRankSum=1.717;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5091,594,0 chrXII 127004 . T C 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=238;Dels=0.00;FS=6.377;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.865;QD=19.95;ReadPosRankSum=2.429;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:4749,522,0 chrXII 127006 . G A 4691.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.55;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:4691,522,0 chrXII 127022 . C T 4711.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=9.7217;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.15;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4711,504,0 chrXII 127219 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.48;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3234,357,0 chrXII 127331 . T A 1913 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=61.23;MQ0=0;QD=22.24;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1946,219,0 chrXII 127390 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=94;Dels=0.02;FS=9.543;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=61.11;MQ0=0;MQRankSum=0.817;QD=21.80;ReadPosRankSum=2.396;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2082,249,0 chrXII 127478 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=24.92;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2973,327,0 chrXII 127531 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=151;Dels=0.00;FS=2.575;HaplotypeScore=7.8403;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.561;QD=23.47;ReadPosRankSum=2.939;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:3,146:151:99:3544,405,0 chrXII 128653 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=10.761;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.114;QD=22.16;ReadPosRankSum=2.419;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3590,408,0 chrXII 128659 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.48;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3710,408,0 chrXII 129489 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.1094;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.306;QD=22.52;ReadPosRankSum=1.704;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2781,309,0 chrXII 129657 . C A 2625 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.52;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2658,288,0 chrXII 129660 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=18.84;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2407,273,0 chrXII 129681 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.140;QD=19.32;ReadPosRankSum=2.385;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2235,252,0 chrXII 129764 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=8.781;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.195;QD=23.22;ReadPosRankSum=2.410;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4365,495,0 chrXII 129828 . C G 4669.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=23.9003;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.72;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4669,557,0 chrXII 129999 . A G 5832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.168;DP=294;Dels=0.00;FS=13.976;HaplotypeScore=26.9223;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.392;QD=19.84;ReadPosRankSum=3.425;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:4,287:294:99:5832,683,0 chrXII 130083 . C T 4669.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;DP=397;Dels=0.00;FS=7.959;HaplotypeScore=44.0741;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=2.397;QD=11.76;ReadPosRankSum=-3.213;SB=-4.440e+03 GT:AD:DP:GQ:PL 1/1:13,382:397:99:4669,516,0 chrXII 130209 . A G 5277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.684;DP=311;Dels=0.00;FS=12.663;HaplotypeScore=11.5241;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.289;QD=16.97;ReadPosRankSum=4.797;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:8,301:311:99:5277,591,0 chrXII 130212 . G A 5130.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=6.8928;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.39;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:5130,579,0 chrXII 130729 . C T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.78;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4617,525,0 chrXII 130739 . G A 4810.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.90;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4810,517,0 chrXII 130857 . C G 3630.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.71;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,186:194:99:3630,414,0 chrXII 130865 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=4.353;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.276;QD=17.64;ReadPosRankSum=1.677;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3334,375,0 chrXII 130917 . C G 2080 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=13.87;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2113,255,0 chrXII 130976 . A G 2968 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.82;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3001,336,0 chrXII 131705 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.35;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3255,372,0 chrXII 131736 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.185;DP=141;Dels=0.00;FS=5.278;HaplotypeScore=7.8968;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.037;QD=21.71;ReadPosRankSum=3.272;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:3094,351,0 chrXII 132130 . C A 4619.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.9301;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=20.17;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4619,513,0 chrXII 132136 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=240;Dels=0.00;FS=8.746;HaplotypeScore=4.4492;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=-0.261;QD=17.65;ReadPosRankSum=2.398;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:4237,480,0 chrXII 132144 . T A 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=245;Dels=0.00;FS=2.595;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=-1.598;QD=17.07;ReadPosRankSum=2.399;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,243:245:99:4183,462,0 chrXII 132151 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=248;Dels=0.00;FS=9.162;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;MQRankSum=0.264;QD=15.10;ReadPosRankSum=2.350;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:2,244:248:99:3745,429,0 chrXII 132219 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=3;QD=15.18;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:3446,375,0 chrXII 132260 . A G 686 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=2;QD=3.57;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:84:719,84,0 chrXII 132368 . G A 5944.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=8.7254;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=21.08;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:5944,660,0 chrXII 132379 . G A 6275.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=22.49;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:6275,679,0 chrXII 132610 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1856;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.11;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3293,375,0 chrXII 132982 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.049;QD=21.32;ReadPosRankSum=1.685;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3189,372,0 chrXII 133031 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.23;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3755,405,0 chrXII 133108 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.39;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3167,342,0 chrXII 133132 . T C 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8549;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.581;QD=20.84;ReadPosRankSum=-0.176;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2805,321,0 chrXII 133477 . C T 4606.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.36;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4606,510,0 chrXII 133716 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.084;QD=23.47;ReadPosRankSum=1.711;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3849,423,0 chrXII 134134 . G A 444 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:477,54,0 chrXII 134294 . T C 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.200;QD=21.08;ReadPosRankSum=1.644;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:96:855,96,0 chrXII 134491 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.37;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3509,396,0 chrXII 134715 . C A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.9095;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.85;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4349,474,0 chrXII 134767 . A G 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=221;Dels=0.00;FS=9.082;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.028;QD=22.69;ReadPosRankSum=2.372;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:5014,552,0 chrXII 134779 . G A 4995.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.02;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4995,546,0 chrXII 134920 . C T 5181.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.92;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5181,564,0 chrXII 135031 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.06;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4390,498,0 chrXII 135067 . T G 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=188;Dels=0.00;FS=7.097;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.644;QD=23.09;ReadPosRankSum=2.423;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,183:188:99:4340,486,0 chrXII 135409 . A G 2962 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.10;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2995,330,0 chrXII 135677 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=136;Dels=0.00;FS=3.206;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.656;QD=20.62;ReadPosRankSum=1.707;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2838,321,0 chrXII 135681 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.46;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2734,297,0 chrXII 135772 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.46;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3361,363,0 chrXII 136027 . C T 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.6488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.311;QD=21.75;ReadPosRankSum=-0.049;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3121,333,0 chrXII 136285 . C G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3396,387,0 chrXII 136474 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=23.13;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3747,408,0 chrXII 136527 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=22.65;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3159,351,0 chrXII 136834 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.61;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3329,378,0 chrXII 137313 . C A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.51;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3620,390,0 chrXII 137371 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.861;QD=23.13;ReadPosRankSum=1.710;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3747,423,0 chrXII 137431 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=133;Dels=0.00;FS=6.667;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.119;QD=23.68;ReadPosRankSum=2.376;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3182,363,0 chrXII 137707 . T C 3001 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3034,345,0 chrXII 138124 . G C 3156 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.73;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3189,354,0 chrXII 138182 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.75;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4322,471,0 chrXII 138657 . A G 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=117;Dels=0.00;FS=4.037;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.729;QD=23.77;ReadPosRankSum=1.702;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,113:117:99:2814,312,0 chrXII 138678 . T C 2795 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.69;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2828,318,0 chrXII 138768 . A G 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.6949;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.598;QD=24.10;ReadPosRankSum=1.698;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2563,288,0 chrXII 139257 . T C 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.091;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-1.572;QD=21.04;ReadPosRankSum=1.700;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2305,267,0 chrXII 139269 . G T 2178 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.55;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2211,240,0 chrXII 139321 . A T 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=0.315;QD=16.76;ReadPosRankSum=1.614;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1525,165,0 chrXII 139322 . A T 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=89;Dels=0.00;FS=3.061;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-0.776;QD=15.75;ReadPosRankSum=1.692;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1435,165,0 chrXII 139668 . A G 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.630;QD=21.75;ReadPosRankSum=1.654;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:990,111,0 chrXII 139713 . C T 825 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.93;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:93:858,93,0 chrXII 140166 . T C 2750 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2783,312,0 chrXII 140300 . T C 1937 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1970,225,0 chrXII 140556 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1552,177,0 chrXII 140612 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=22.30;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1215,132,0 chrXII 140731 . T C 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-0.947;QD=22.57;ReadPosRankSum=1.686;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1726,198,0 chrXII 141153 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.07;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3509,393,0 chrXII 141374 . G C 3746.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.70;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:3746,426,0 chrXII 141390 . C T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.02;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3931,426,0 chrXII 141933 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.86;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2594,285,0 chrXII 142017 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=4.559;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.074;QD=24.82;ReadPosRankSum=1.658;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3500,387,0 chrXII 142324 . A C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=120;Dels=0.00;FS=6.599;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.915;QD=21.29;ReadPosRankSum=2.408;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,115:120:99:2588,297,0 chrXII 142500 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2633,285,0 chrXII 142998 . G A 1347 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=22.45;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1380,153,0 chrXII 143009 . C G 1321 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.02;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1354,156,0 chrXII 143093 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.22;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1811,198,0 chrXII 143135 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.23;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2682,285,0 chrXII 143164 . C A 2107 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.95;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2140,237,0 chrXII 143452 . T C 2190 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=16.72;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2223,246,0 chrXII 143770 . T C 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.8022;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.145;QD=20.57;ReadPosRankSum=1.644;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2502,288,0 chrXII 143974 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=148;Dels=0.00;FS=3.037;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.333;QD=23.06;ReadPosRankSum=2.383;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3413,390,0 chrXII 144049 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.72;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3683,396,0 chrXII 144189 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.72;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3164,342,0 chrXII 144379 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.66;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2589,291,0 chrXII 144822 . G A 4750.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.74;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4750,519,0 chrXII 145042 . G T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.6917;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.24;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4810,537,0 chrXII 145067 . G A 4552.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.34;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4552,495,0 chrXII 145416 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2465,267,0 chrXII 145780 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.34;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3700,417,0 chrXII 145897 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.49;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3509,393,0 chrXII 146088 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.00;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3498,378,0 chrXII 146111 . C A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.06;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3496,378,0 chrXII 146275 . C T 4299.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.1564;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.71;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4299,468,0 chrXII 146317 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9302;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.19;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3919,432,0 chrXII 146353 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.99;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4055,441,0 chrXII 146401 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4173,450,0 chrXII 146796 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.37;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1642,180,0 chrXII 146801 . T C 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.778;QD=19.14;ReadPosRankSum=2.391;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1660,189,0 chrXII 147401 . G A 6298.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.86;SB=-3.365e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6298,690,0 chrXII 147547 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.88;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4740,519,0 chrXII 147550 . G A 4614.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.33;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4614,510,0 chrXII 147585 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.1156;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.392;QD=20.01;ReadPosRankSum=0.917;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4122,447,0 chrXII 148018 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.3119;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.63;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3940,435,0 chrXII 148027 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.495;QD=20.25;ReadPosRankSum=1.694;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3705,414,0 chrXII 148048 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.94;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3629,411,0 chrXII 148120 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=193;Dels=0.00;FS=10.617;HaplotypeScore=9.1926;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.078;QD=21.79;ReadPosRankSum=2.912;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4205,471,0 chrXII 148252 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.445;QD=21.12;ReadPosRankSum=1.708;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3095,354,0 chrXII 148300 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.71;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3701,417,0 chrXII 148847 . C T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4055,438,0 chrXII 149893 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2530,288,0 chrXII 149989 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.24;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2682,297,0 chrXII 150352 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=23.66;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2707,294,0 chrXII 150398 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.8214;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=23.48;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2733,306,0 chrXII 150435 . T A 2133 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=24.52;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2166,234,0 chrXII 150496 . C A 1481 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=24.28;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1514,162,0 chrXII 150544 . C T 291 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2101;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=4.69;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:36:324,36,0 chrXII 150620 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=24.42;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2011,231,0 chrXII 150660 . A G 1379 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=21.89;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1412,162,0 chrXII 150671 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=23.87;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1274,135,0 chrXII 150816 . C T 1001 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=18.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1034,114,0 chrXII 150833 . T A 568 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=17.75;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:66:601,66,0 chrXII 150858 . G T 274 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=10.5476;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=15.22;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:36:307,36,0 chrXII 150874 . A C 67.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=13.50;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:100,12,0 chrXII 150875 . C A 60.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=12.10;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:93,12,0 chrXII 150955 . A G 531 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.09;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:63:564,63,0 chrXII 150983 . C T 702 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=35.5515;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=15.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:84:735,84,0 chrXII 151001 . G A 872 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=17.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:50:99:905,99,0 chrXII 151037 . A T 773 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=14.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:87:806,87,0 chrXII 151046 . T A 697 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=13.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:78:730,78,0 chrXII 151170 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.37;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2277,246,0 chrXII 151178 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=2.784;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.036;QD=19.73;ReadPosRankSum=2.166;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2085,234,0 chrXII 151249 . C A 2616 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=24.00;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2649,288,0 chrXII 151308 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.63;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3201,360,0 chrXII 151453 . G C 3202 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.71;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3235,366,0 chrXII 151548 . C A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.04;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3825,429,0 chrXII 151611 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=167;Dels=0.00;FS=3.287;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.000;QD=20.19;ReadPosRankSum=1.711;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,162:167:99:3371,393,0 chrXII 151726 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.37;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4604,498,0 chrXII 152079 . A G 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=129;Dels=0.00;FS=2.587;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.383;QD=17.78;ReadPosRankSum=1.758;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2326,267,0 chrXII 152081 . A C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-0.907;QD=18.00;ReadPosRankSum=1.705;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2319,264,0 chrXII 152141 . G T 2538 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.47;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2571,288,0 chrXII 152142 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.51;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2597,285,0 chrXII 152303 . T A 2077 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.06;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2110,231,0 chrXII 152304 . A T 2077 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.06;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2110,234,0 chrXII 152313 . A G 2849 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=23.35;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2882,321,0 chrXII 152571 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=160;Dels=0.00;FS=2.970;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.960;QD=23.66;ReadPosRankSum=2.419;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3785,435,0 chrXII 152838 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=166;Dels=0.00;FS=3.144;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.115;QD=21.07;ReadPosRankSum=1.711;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3498,411,0 chrXII 153157 . T C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=100;Dels=0.00;FS=3.768;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.663;QD=22.18;ReadPosRankSum=1.628;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2251,249,0 chrXII 153238 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.69;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2597,282,0 chrXII 153251 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.16;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2256,243,0 chrXII 153346 . T A 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.366;QD=22.50;ReadPosRankSum=1.699;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2373,258,0 chrXII 153450 . A G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=4.342;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.901;QD=22.70;ReadPosRankSum=1.704;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2871,342,0 chrXII 153729 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.30;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3308,360,0 chrXII 153780 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=118;Dels=0.00;FS=11.090;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.410;QD=20.86;ReadPosRankSum=2.366;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2494,285,0 chrXII 154004 . T A 2155 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2188,237,0 chrXII 154310 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.19;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2216,255,0 chrXII 154399 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2500,282,0 chrXII 154678 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.52;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2996,327,0 chrXII 155252 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.08;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3508,396,0 chrXII 155280 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.36;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3253,375,0 chrXII 155484 . C A 3015 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3048,339,0 chrXII 155912 . A T 2961 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2994,333,0 chrXII 156511 . T C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.392;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.113;QD=24.12;ReadPosRankSum=1.667;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2614,291,0 chrXII 157014 . T C 2201 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2234,255,0 chrXII 157169 . C G 2542 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.76;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2575,285,0 chrXII 157577 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=24.08;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3139,348,0 chrXII 157665 . A C 2879 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.56;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2912,330,0 chrXII 157753 . A T 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.458;QD=21.62;ReadPosRankSum=1.692;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1914,207,0 chrXII 157785 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.84;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1909,210,0 chrXII 157806 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.83;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1991,228,0 chrXII 158132 . A T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.02;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4329,468,0 chrXII 158461 . A G 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=193;Dels=0.00;FS=6.272;HaplotypeScore=11.7859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.350;QD=23.23;ReadPosRankSum=2.373;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4484,504,0 chrXII 158537 . A G 4554.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.6440;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.77;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4554,522,0 chrXII 159272 . A C 5031.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.7283;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.87;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5031,576,0 chrXII 159591 . G A 4219.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.97;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4219,462,0 chrXII 159665 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.66;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3441,387,0 chrXII 159671 . C G 3398.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.53;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3398,396,0 chrXII 160354 . A C 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.264;QD=21.62;ReadPosRankSum=1.693;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3848,453,0 chrXII 160402 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5591;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.52;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3904,426,0 chrXII 160435 . A C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=159;Dels=0.00;FS=3.027;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.537;QD=23.55;ReadPosRankSum=2.403;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3744,417,0 chrXII 160531 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.52;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3599,396,0 chrXII 160756 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=160;Dels=0.00;FS=6.675;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.460;QD=20.96;ReadPosRankSum=2.419;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3354,390,0 chrXII 161156 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3999,429,0 chrXII 161206 . A G 3926.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.77;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3926,447,0 chrXII 161416 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.20;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3530,399,0 chrXII 161675 . T C 227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=-0.347;QD=11.35;ReadPosRankSum=1.561;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:30:260,30,0 chrXII 162493 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.65;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2631,306,0 chrXII 162566 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.0616;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.42;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3177,351,0 chrXII 162577 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.86;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3296,375,0 chrXII 162900 . C T 4037.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.55;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4037,432,0 chrXII 162922 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.5797;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.20;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3686,399,0 chrXII 163451 . A G 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=240;Dels=0.00;FS=6.017;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-2.008;QD=20.72;ReadPosRankSum=2.971;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:3,237:240:99:4972,582,0 chrXII 163609 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.1067;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.68;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,207:213:99:4192,492,0 chrXII 163665 . T C 4771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=235;Dels=0.00;FS=6.983;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.089;QD=20.30;ReadPosRankSum=2.355;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:4771,552,0 chrXII 163815 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.4525;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.66;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4079,453,0 chrXII 164023 . A T 2862 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.74;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2895,330,0 chrXII 164032 . G A 2714 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.09;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2747,309,0 chrXII 164111 . A G 2395 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.96;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2428,276,0 chrXII 164123 . A C 2381 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.65;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2414,267,0 chrXII 164197 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=107;Dels=0.00;FS=2.987;HaplotypeScore=6.6500;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.035;QD=22.28;ReadPosRankSum=2.404;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2417,270,0 chrXII 164389 . C A 5441.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.8653;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.31;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5441,586,0 chrXII 164577 . C T 5203.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.8185;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.90;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5203,582,0 chrXII 164682 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0431;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.35;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3853,417,0 chrXII 164732 . A C 2743 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.66;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2776,309,0 chrXII 164734 . A G 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.000;QD=17.71;ReadPosRankSum=1.708;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:2654,309,0 chrXII 164844 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.44;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3687,402,0 chrXII 164865 . G T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.81;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3434,390,0 chrXII 164910 . T C 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.871;QD=19.24;ReadPosRankSum=1.695;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3636,423,0 chrXII 164928 . A C 3487.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.16;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3487,399,0 chrXII 164945 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.98;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3777,423,0 chrXII 165084 . A G 5140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=229;Dels=0.00;FS=8.807;HaplotypeScore=16.3201;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.485;QD=22.45;ReadPosRankSum=3.345;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:4,222:229:99:5140,588,0 chrXII 165412 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7290;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.47;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3285,363,0 chrXII 165496 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.82;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3376,375,0 chrXII 165796 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3051,348,0 chrXII 166067 . T G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.842;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.346;QD=22.96;ReadPosRankSum=1.620;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3605,402,0 chrXII 166160 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.57;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3036,327,0 chrXII 166515 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.5713;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.95;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2902,318,0 chrXII 166641 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.63;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3805,408,0 chrXII 166909 . A C 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=172;Dels=0.00;FS=7.012;HaplotypeScore=15.8087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.364;QD=22.91;ReadPosRankSum=2.378;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3941,450,0 chrXII 166947 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.3812;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.515;QD=23.42;ReadPosRankSum=1.695;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4357,480,0 chrXII 167296 . C A 2887 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2920,324,0 chrXII 167521 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.3958;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.05;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2948,330,0 chrXII 167640 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.59;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3320,378,0 chrXII 167685 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.01;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3890,447,0 chrXII 167737 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.854;QD=22.52;ReadPosRankSum=1.686;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3378,384,0 chrXII 168055 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.97;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1551,174,0 chrXII 168057 . C G 1504 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.79;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1537,174,0 chrXII 168149 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.00;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2195,237,0 chrXII 168169 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.23;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2117,237,0 chrXII 168351 . G T 1878 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.98;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1911,216,0 chrXII 168352 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.33;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1964,216,0 chrXII 168861 . G A 4396.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.8893;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.66;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4396,477,0 chrXII 169124 . G T 4947.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.61;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4947,534,0 chrXII 169177 . T A 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.150;QD=23.66;ReadPosRankSum=1.625;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3833,414,0 chrXII 169633 . C T 5421.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=17.6013;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.77;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5421,586,0 chrXII 169694 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.55;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3494,411,0 chrXII 169739 . C G 2279 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.13;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2312,261,0 chrXII 169842 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=17.84;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1514,165,0 chrXII 169954 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.69;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2088,225,0 chrXII 169985 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.80;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2039,219,0 chrXII 170342 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.51;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2980,327,0 chrXII 170609 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.95;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1890,207,0 chrXII 170821 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=0.84;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:9:75,9,0 chrXII 170859 . G A 774 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=13.34;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:90:807,90,0 chrXII 170932 . T A 2098 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.98;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2131,240,0 chrXII 170937 . C A 2225 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=21.81;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2258,246,0 chrXII 170963 . A G 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;MQRankSum=-1.732;QD=19.46;ReadPosRankSum=1.699;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2115,243,0 chrXII 171013 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=17.05;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,107:111:99:1925,219,0 chrXII 171038 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=18.84;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2030,219,0 chrXII 171076 . T G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.199;QD=15.90;ReadPosRankSum=1.640;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1830,201,0 chrXII 171335 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.22;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3274,381,0 chrXII 171872 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.87;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1870,219,0 chrXII 172007 . A T 983 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.12;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1016,111,0 chrXII 172080 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=13.64;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1138,126,0 chrXII 172105 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=16.21;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1265,138,0 chrXII 172316 . A G 2460 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.77;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2493,276,0 chrXII 172558 . G A 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1747;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.676;QD=22.20;ReadPosRankSum=-0.251;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2786,303,0 chrXII 172820 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.6076;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.69;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3364,369,0 chrXII 173105 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3599,402,0 chrXII 173861 . T A 3152 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3185,345,0 chrXII 173892 . A T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6459;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.67;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3306,357,0 chrXII 173951 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.573;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.615;QD=22.69;ReadPosRankSum=0.729;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3471,389,0 chrXII 174459 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.27;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2962,339,0 chrXII 174475 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.79;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2871,315,0 chrXII 174494 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.41;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3299,375,0 chrXII 174526 . T A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.00;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3520,384,0 chrXII 174540 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=184;Dels=0.00;FS=6.641;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.385;QD=18.88;ReadPosRankSum=2.423;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:3473,399,0 chrXII 174688 . T C 4833.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.80;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4833,564,0 chrXII 174938 . A C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=114;Dels=0.00;FS=3.021;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.403;QD=21.69;ReadPosRankSum=2.384;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2506,282,0 chrXII 175138 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=19.11;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2383,273,0 chrXII 175158 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=14.47;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2305,258,0 chrXII 175160 . A G 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=4.997;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;MQRankSum=-0.548;QD=14.01;ReadPosRankSum=1.644;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2246,255,0 chrXII 175187 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=13.98;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:2564,279,0 chrXII 175203 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=12.38;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:2434,267,0 chrXII 175207 . A G 2309 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.4322;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=11.90;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:2342,261,0 chrXII 175382 . C A 5251.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.9326;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=22.44;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5251,585,0 chrXII 175467 . G T 5746.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=10.2844;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.80;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5746,636,0 chrXII 175770 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.71;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3731,411,0 chrXII 176348 . G T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3319,363,0 chrXII 176573 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.43;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3913,426,0 chrXII 176622 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.7933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3667,393,0 chrXII 176833 . T G 3859.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3859,426,0 chrXII 176892 . C T 4046.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.80;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4046,444,0 chrXII 176946 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.7273;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.00;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4268,474,0 chrXII 177754 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.48;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3944,447,0 chrXII 177778 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.06;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4128,459,0 chrXII 178195 . T C 6588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=10.5808;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.995;QD=24.58;ReadPosRankSum=1.719;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:6588,732,0 chrXII 178408 . A G 6255.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=13.3499;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.64;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:6255,717,0 chrXII 178655 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.56;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3034,327,0 chrXII 178716 . C A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.5199;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.93;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4259,483,0 chrXII 178813 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=24.08;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3998,456,0 chrXII 179029 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=3.028;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=1.032;QD=20.92;ReadPosRankSum=2.369;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4455,495,0 chrXII 179034 . A G 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=206;Dels=0.00;FS=3.027;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.856;QD=19.99;ReadPosRankSum=2.378;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4117,468,0 chrXII 179276 . A C 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=3.376;HaplotypeScore=10.7284;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.260;QD=23.80;ReadPosRankSum=1.680;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4783,528,0 chrXII 179379 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.47;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3873,429,0 chrXII 179638 . A T 1292 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.53;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1325,144,0 chrXII 179688 . G A 798 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.46;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:90:831,90,0 chrXII 179807 . T A 605 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=15.51;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:638,69,0 chrXII 179815 . T A 507 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=12.67;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:60:540,60,0 chrXII 179827 . G A 515 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=15.15;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:60:548,60,0 chrXII 179828 . G T 522 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=15.35;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:60:555,60,0 chrXII 179844 . T C 530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=-2.327;QD=13.25;ReadPosRankSum=2.327;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:2,38:40:60:563,60,0 chrXII 179855 . A G 533 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=11.84;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:69:566,69,0 chrXII 179890 . G T 628 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=13.36;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:661,72,0 chrXII 179902 . T C 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-1.732;QD=16.93;ReadPosRankSum=1.669;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:964,111,0 chrXII 179978 . G T 2232 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=24.80;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2265,246,0 chrXII 180421 . G A 4813.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4813,522,0 chrXII 180545 . C T 5843.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.8390;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5843,639,0 chrXII 180683 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=3.334;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.660;QD=20.93;ReadPosRankSum=1.675;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3788,441,0 chrXII 180796 . G A 4719.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4719,513,0 chrXII 180860 . T C 3666.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.19;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3666,417,0 chrXII 181545 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.43;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1257,138,0 chrXII 181615 . T A 642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.086;QD=16.05;ReadPosRankSum=1.831;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:2,38:40:75:675,75,0 chrXII 181616 . A T 630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.103;QD=15.75;ReadPosRankSum=2.567;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:3,37:40:75:663,75,0 chrXII 181770 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1451,159,0 chrXII 182125 . A G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.905;QD=21.99;ReadPosRankSum=1.693;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1990,231,0 chrXII 182158 . T C 2855 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.48;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2888,339,0 chrXII 182197 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5472;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.133;QD=21.59;ReadPosRankSum=1.972;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3056,354,0 chrXII 182242 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.43;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2613,285,0 chrXII 182284 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.24;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2520,273,0 chrXII 182314 . T C 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=130;Dels=0.00;FS=5.376;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.031;QD=21.81;ReadPosRankSum=2.931;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2868,327,0 chrXII 182506 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.298;QD=21.68;ReadPosRankSum=1.688;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3403,393,0 chrXII 182854 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3451,378,0 chrXII 182953 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.07;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3186,345,0 chrXII 183148 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.8703;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.498;QD=24.89;ReadPosRankSum=1.081;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3311,357,0 chrXII 183318 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.43;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3773,408,0 chrXII 183574 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.8712;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.20;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3797,432,0 chrXII 183669 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=11.9366;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.77;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4088,444,0 chrXII 183745 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=168;Dels=0.00;FS=6.099;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.832;QD=21.65;ReadPosRankSum=2.420;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3637,405,0 chrXII 183955 . G A 5017.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.7836;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.78;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5017,570,0 chrXII 184185 . T A 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.443;QD=24.03;ReadPosRankSum=1.608;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4037,435,0 chrXII 184390 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.48;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3609,402,0 chrXII 184414 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.9116;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.57;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3860,411,0 chrXII 184588 . T G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.69;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3483,393,0 chrXII 185335 . G C 682 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:84:715,84,0 chrXII 185813 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.5337;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.48;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4343,489,0 chrXII 186034 . T C 4584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.6322;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.376;QD=19.34;ReadPosRankSum=1.644;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:4584,513,0 chrXII 186045 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.8448;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.091;QD=19.02;ReadPosRankSum=1.689;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:4621,540,0 chrXII 186083 . C A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.37;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4436,489,0 chrXII 186131 . G A 4705.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.84;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4705,522,0 chrXII 186152 . T C 4683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=3.457;HaplotypeScore=8.4997;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.249;QD=21.68;ReadPosRankSum=1.700;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4683,534,0 chrXII 187415 . G C 2750 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.65;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2783,321,0 chrXII 187694 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.04;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4351,471,0 chrXII 188127 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3763,411,0 chrXII 188360 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2515,270,0 chrXII 188452 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2196,237,0 chrXII 188839 . A T 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.400;QD=18.06;ReadPosRankSum=1.688;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1442,165,0 chrXII 188842 . A C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.294;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-1.557;QD=17.62;ReadPosRankSum=1.162;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1425,143,0 chrXII 188851 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.81;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1519,174,0 chrXII 188905 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.10;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2274,249,0 chrXII 189070 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.367;QD=23.87;ReadPosRankSum=1.662;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2396,276,0 chrXII 189387 . G T 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.4613;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.081;QD=23.24;ReadPosRankSum=0.906;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4508,478,0 chrXII 189603 . T C 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=196;Dels=0.00;FS=14.587;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.047;QD=22.77;ReadPosRankSum=2.954;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:3,191:196:99:4462,495,0 chrXII 190285 . C T 3438.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3438,375,0 chrXII 190353 . T C 4051.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.4272;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.28;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4051,462,0 chrXII 190522 . G A 6062.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.5270;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:6062,660,0 chrXII 190951 . A C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=143;Dels=0.00;FS=8.101;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.380;QD=21.96;ReadPosRankSum=2.414;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,137:143:99:3173,363,0 chrXII 192023 . T C 2793 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=21.99;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2826,318,0 chrXII 192526 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.59;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3541,384,0 chrXII 192599 . T C 4420.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=21.05;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4420,516,0 chrXII 193426 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.18;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1855,219,0 chrXII 193884 . A T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.51;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3432,378,0 chrXII 193932 . T G 2898 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.29;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2931,330,0 chrXII 193985 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.05;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3164,348,0 chrXII 194032 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.87;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3659,402,0 chrXII 194055 . C T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.28;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3587,390,0 chrXII 194091 . A G 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.827;QD=21.63;ReadPosRankSum=1.706;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2931,333,0 chrXII 194179 . A G 3115 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.74;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3148,363,0 chrXII 194272 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.15;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2794,309,0 chrXII 194277 . T C 2903 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.44;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2936,327,0 chrXII 194358 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.6430;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.58;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4291,465,0 chrXII 194407 . T C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=184;Dels=0.00;FS=2.576;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.379;QD=17.41;ReadPosRankSum=2.940;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3237,366,0 chrXII 194410 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.60;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3292,363,0 chrXII 194691 . A G 5629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=248;Dels=0.00;FS=3.616;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.591;QD=22.70;ReadPosRankSum=1.704;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5629,651,0 chrXII 194811 . C T 5625.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.5606;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.89;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5625,604,0 chrXII 195525 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2237,246,0 chrXII 195645 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3267,360,0 chrXII 196197 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.4593;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.34;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3462,408,0 chrXII 196538 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.64;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1870,201,0 chrXII 196744 . T C 221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.104;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=21.2870;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=1.349;QD=6.14;ReadPosRankSum=1.505;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:5,27:36:30:254,30,0 chrXII 196845 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.26;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1998,219,0 chrXII 196849 . T C 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.633;QD=18.22;ReadPosRankSum=3.761;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:5,106:111:99:2055,231,0 chrXII 196991 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.924;QD=24.01;ReadPosRankSum=1.690;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3914,438,0 chrXII 197276 . T C 5756.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.6725;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.40;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:5756,672,0 chrXII 197429 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.36;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3589,387,0 chrXII 197459 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.13;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4186,459,0 chrXII 197675 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4391;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.44;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3329,357,0 chrXII 197801 . A C 4013.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4013,459,0 chrXII 198146 . G A 5092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.6208;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.505;QD=22.14;ReadPosRankSum=0.688;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:5092,555,0 chrXII 198396 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=4.416;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=-0.283;QD=20.74;ReadPosRankSum=1.683;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2978,336,0 chrXII 198410 . A T 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=2.739;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-1.410;QD=19.58;ReadPosRankSum=2.350;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2441,273,0 chrXII 198428 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.83;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2432,264,0 chrXII 198484 . A C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8705;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.119;QD=21.11;ReadPosRankSum=1.701;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2418,276,0 chrXII 198577 . G C 2124 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.04;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2157,243,0 chrXII 198620 . A T 2140 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.19;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2173,246,0 chrXII 198624 . T C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-1.632;QD=21.60;ReadPosRankSum=1.666;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2279,252,0 chrXII 198744 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.99;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2424,267,0 chrXII 198756 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.41;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2380,258,0 chrXII 199043 . A G 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.602;QD=20.96;ReadPosRankSum=1.716;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4486,525,0 chrXII 199425 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.1376;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.64;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4045,441,0 chrXII 199439 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1342;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.03;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4121,444,0 chrXII 199528 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.1144;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.70;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4540,501,0 chrXII 199541 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.3984;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-1.134;QD=20.59;ReadPosRankSum=1.662;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4076,465,0 chrXII 200350 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.72;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4351,492,0 chrXII 200465 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.22;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4206,456,0 chrXII 200473 . A C 4372.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.82;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4372,492,0 chrXII 200917 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.41;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3240,366,0 chrXII 201288 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.654;QD=22.95;ReadPosRankSum=1.713;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4131,456,0 chrXII 201354 . T G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.30;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3938,438,0 chrXII 201651 . G A 2125 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.61;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2158,234,0 chrXII 201654 . A G 1987 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.84;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2020,225,0 chrXII 201658 . T G 1784 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.24;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1817,207,0 chrXII 201727 . T C 1152 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.95;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1185,129,0 chrXII 201879 . G T 929 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.60;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:962,105,0 chrXII 202093 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=23.59;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2652,303,0 chrXII 202134 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.07;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3415,393,0 chrXII 202261 . G A 5188.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=23.69;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5188,570,0 chrXII 202626 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=24.34;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2954,324,0 chrXII 202651 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=23.45;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2964,321,0 chrXII 202775 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=23.08;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2110,246,0 chrXII 202845 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=144.7984;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;MQRankSum=-0.866;QD=14.73;ReadPosRankSum=1.567;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2508,285,0 chrXII 202872 . A G 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=203;Dels=0.00;FS=12.780;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;MQRankSum=-1.397;QD=13.48;ReadPosRankSum=2.425;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:2770,318,0 chrXII 202888 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=13.02;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2546,276,0 chrXII 202895 . A G 2596 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=12.79;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:2629,291,0 chrXII 202961 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=16.27;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2165,228,0 chrXII 202970 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=116.9475;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=15.21;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2010,216,0 chrXII 202991 . T C 1991 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;QD=14.75;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2024,228,0 chrXII 202999 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=14.80;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1986,231,0 chrXII 203096 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.3316;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=-0.093;QD=20.75;ReadPosRankSum=-1.136;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3880,444,0 chrXII 203154 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1466;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=23.38;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3026,333,0 chrXII 203202 . T C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=95;Dels=0.00;FS=3.452;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-0.577;QD=22.17;ReadPosRankSum=1.658;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:2139,243,0 chrXII 203484 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.03;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3386,372,0 chrXII 203513 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.307;QD=22.39;ReadPosRankSum=1.711;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3650,426,0 chrXII 203682 . C G 2980 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.13;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3013,339,0 chrXII 203753 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.25;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2881,312,0 chrXII 203798 . A G 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.274;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.044;QD=21.94;ReadPosRankSum=1.707;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3017,339,0 chrXII 203834 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.16;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2870,318,0 chrXII 203913 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=130;Dels=0.00;FS=3.043;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.201;QD=22.65;ReadPosRankSum=2.374;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2978,333,0 chrXII 204055 . A T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=102.0249;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.487;QD=0.14;ReadPosRankSum=-4.545;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:90,31:121:47:47,0,1344 chrXII 204524 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.584;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.181;QD=22.55;ReadPosRankSum=1.699;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2401,276,0 chrXII 204536 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.77;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2469,270,0 chrXII 204555 . T C 2102 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.23;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2135,240,0 chrXII 204575 . A G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-1.595;QD=19.87;ReadPosRankSum=1.629;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2040,234,0 chrXII 204809 . T A 2231 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.75;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2264,258,0 chrXII 204825 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=127;Dels=0.00;FS=10.969;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.107;QD=19.48;ReadPosRankSum=2.411;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2507,285,0 chrXII 204907 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.979;QD=24.22;ReadPosRankSum=1.702;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2818,315,0 chrXII 205059 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=22.59;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3457,378,0 chrXII 205086 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=22.50;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3308,360,0 chrXII 205180 . G T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=20.81;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3433,378,0 chrXII 205188 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.45;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3126,357,0 chrXII 205266 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.15;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3477,384,0 chrXII 205361 . T C 2561 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.85;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2594,291,0 chrXII 205368 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.86;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2615,294,0 chrXII 205389 . A G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.778;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6424;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.027;QD=18.64;ReadPosRankSum=1.601;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2624,274,0 chrXII 205460 . T A 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=137;Dels=0.00;FS=8.467;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.170;QD=21.99;ReadPosRankSum=2.414;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3045,333,0 chrXII 205906 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.54;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3625,399,0 chrXII 206077 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.99;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3408,390,0 chrXII 206144 . T C 3140 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.38;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3173,375,0 chrXII 206153 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.302;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.157;QD=20.33;ReadPosRankSum=1.687;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3225,366,0 chrXII 206358 . C T 4330.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.03;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4330,480,0 chrXII 206464 . T A 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=3.058;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.286;QD=22.87;ReadPosRankSum=1.675;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4163,468,0 chrXII 206681 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4092,459,0 chrXII 206784 . G A 4886.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4886,528,0 chrXII 206823 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.74;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4440,492,0 chrXII 206894 . C A 4463.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.1135;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.49;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4463,489,0 chrXII 207274 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.19;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3454,375,0 chrXII 207285 . A G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.465;QD=18.82;ReadPosRankSum=1.711;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3138,360,0 chrXII 207288 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=19.62;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3296,369,0 chrXII 207333 . A G 2485 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.12;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2518,285,0 chrXII 207372 . T C 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.335;QD=21.78;ReadPosRankSum=1.704;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2690,303,0 chrXII 207426 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.148;HaplotypeScore=6.1802;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.054;QD=23.19;ReadPosRankSum=1.651;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3001,333,0 chrXII 207537 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.56;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3096,336,0 chrXII 207684 . A C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=3.326;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.000;QD=23.50;ReadPosRankSum=1.611;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2736,309,0 chrXII 207765 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.42;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2820,315,0 chrXII 207885 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.98;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3717,405,0 chrXII 207908 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.51;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3332,384,0 chrXII 207990 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.49;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2184,246,0 chrXII 208056 . T C 2849 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.0115;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.42;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2882,330,0 chrXII 208218 . G T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.08;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3912,423,0 chrXII 208290 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.83;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3206,351,0 chrXII 208353 . A G 2781 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2814,315,0 chrXII 208651 . G A 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;DP=78;Dels=0.00;FS=5.036;HaplotypeScore=62.2719;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=1.756;QD=16.36;ReadPosRankSum=0.600;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:4,74:78:99:1309,119,0 chrXII 208751 . A G 2063 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.56;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2096,234,0 chrXII 208796 . T C 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=3.023;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.276;QD=18.45;ReadPosRankSum=2.391;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1583,177,0 chrXII 208797 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.80;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1696,189,0 chrXII 209042 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.67;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3215,345,0 chrXII 209348 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.3176;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.16;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:3044,327,0 chrXII 209540 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6174;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.17;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3747,441,0 chrXII 209708 . T C 4960.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4960,564,0 chrXII 209847 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3398;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.23;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3334,378,0 chrXII 209884 . C T 3351.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7476;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.81;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3351,375,0 chrXII 210023 . C G 2941 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.79;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2974,336,0 chrXII 210043 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.95;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2547,279,0 chrXII 210102 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.684;QD=22.82;ReadPosRankSum=1.674;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2794,312,0 chrXII 210240 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.61;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2773,300,0 chrXII 210476 . A G 2895 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.73;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2928,327,0 chrXII 210527 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.91;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3484,378,0 chrXII 210539 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.563;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.185;QD=20.19;ReadPosRankSum=1.667;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3244,360,0 chrXII 210560 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.097;QD=18.74;ReadPosRankSum=1.711;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3050,339,0 chrXII 210572 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.16;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2956,324,0 chrXII 210638 . A G 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.091;DP=138;Dels=0.00;FS=3.014;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.404;QD=16.21;ReadPosRankSum=2.414;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2270,261,0 chrXII 210644 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.14;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2550,273,0 chrXII 210791 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=22.36;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3555,396,0 chrXII 211019 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=22.40;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3786,417,0 chrXII 211028 . T A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.04;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3527,387,0 chrXII 211045 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.2802;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.97;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3715,414,0 chrXII 211130 . A C 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.6718;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.193;QD=22.56;ReadPosRankSum=1.620;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4805,555,0 chrXII 211190 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=175;Dels=0.00;FS=6.299;HaplotypeScore=10.6141;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.934;QD=21.56;ReadPosRankSum=2.337;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3773,432,0 chrXII 211217 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.1860;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.19;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3550,384,0 chrXII 211226 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=3.037;HaplotypeScore=11.0881;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-1.668;QD=20.98;ReadPosRankSum=1.560;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3398,375,0 chrXII 212026 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.9847;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.06;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2059,234,0 chrXII 212081 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2317,252,0 chrXII 212681 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.09;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2645,300,0 chrXII 212683 . T C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=133;Dels=0.00;FS=3.023;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.453;QD=19.08;ReadPosRankSum=2.413;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2570,291,0 chrXII 212780 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.10;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3280,354,0 chrXII 212801 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.37;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3467,372,0 chrXII 212823 . A G 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.143;QD=19.32;ReadPosRankSum=1.709;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2873,333,0 chrXII 212873 . A G 2533 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.79;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2566,285,0 chrXII 213037 . T C 2720 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.59;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2753,321,0 chrXII 213069 . C G 2833 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.31;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2866,318,0 chrXII 213226 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=127;Dels=0.00;FS=9.106;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.540;QD=20.48;ReadPosRankSum=3.374;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:4,121:127:99:2634,306,0 chrXII 213278 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.44;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2752,300,0 chrXII 213307 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.09;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2728,294,0 chrXII 213308 . G T 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.337;QD=17.13;ReadPosRankSum=1.327;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2671,297,0 chrXII 213334 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.20;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2854,303,0 chrXII 213413 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.64;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2586,282,0 chrXII 213421 . A G 2661 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.14;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2694,300,0 chrXII 213460 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.23;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2723,294,0 chrXII 213601 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.72;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2509,270,0 chrXII 213659 . T C 2638 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.55;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2671,297,0 chrXII 213996 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.50;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3595,408,0 chrXII 214160 . T C 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=187;Dels=0.00;FS=4.085;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.621;QD=23.51;ReadPosRankSum=1.695;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4397,480,0 chrXII 214223 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.47;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3700,414,0 chrXII 214228 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.760;QD=18.66;ReadPosRankSum=1.714;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:3695,423,0 chrXII 214283 . G A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.93;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4353,486,0 chrXII 214310 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.79;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4057,465,0 chrXII 214592 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1958;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.81;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3626,402,0 chrXII 214663 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.30;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3016,342,0 chrXII 214721 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=87.5633;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=22.39;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2496,273,0 chrXII 214746 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=22.25;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2570,285,0 chrXII 214864 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=128;Dels=0.00;FS=9.668;HaplotypeScore=98.9872;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-1.770;QD=23.49;ReadPosRankSum=2.945;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:3040,345,0 chrXII 214970 . A G 2503 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=22.96;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2536,285,0 chrXII 214988 . A G 2152 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=23.39;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2185,246,0 chrXII 214999 . C A 2041 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=22.93;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2074,222,0 chrXII 215008 . T C 1584 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=20.84;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1617,186,0 chrXII 215021 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=19.69;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1431,165,0 chrXII 221077 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=19.99;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2452,267,0 chrXII 221093 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=20.73;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2770,321,0 chrXII 221139 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.371;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;MQRankSum=0.506;QD=21.61;ReadPosRankSum=1.701;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2475,279,0 chrXII 221190 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=18.27;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2225,258,0 chrXII 221206 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=19.20;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2472,276,0 chrXII 221229 . G A 2494 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=17.32;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2527,288,0 chrXII 221232 . G T 2645 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=17.63;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2678,303,0 chrXII 221368 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=139;Dels=0.00;FS=3.036;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=0.221;QD=19.72;ReadPosRankSum=2.414;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2774,312,0 chrXII 221376 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.074;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=0.226;QD=19.47;ReadPosRankSum=1.682;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2720,309,0 chrXII 221392 . T A 3043 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=19.51;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3076,333,0 chrXII 221396 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=17.78;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2985,336,0 chrXII 221668 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.83;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3624,411,0 chrXII 222010 . C T 1081 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1114,126,0 chrXII 222046 . C T 1066 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1099,117,0 chrXII 222227 . G A 2133 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.97;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2166,234,0 chrXII 222430 . T C 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=4.230;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.601;QD=22.14;ReadPosRankSum=1.626;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2203,246,0 chrXII 222641 . C A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.92;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4330,495,0 chrXII 223075 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=4.188;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.693;QD=20.29;ReadPosRankSum=1.710;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3307,366,0 chrXII 223258 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6186;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.708;QD=21.19;ReadPosRankSum=1.635;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3063,342,0 chrXII 223495 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.16;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4331,465,0 chrXII 223519 . A G 4037.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.07;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4037,441,0 chrXII 223541 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.49;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3586,405,0 chrXII 223716 . A C 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=197;Dels=0.00;FS=5.356;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.041;QD=22.65;ReadPosRankSum=2.964;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:4462,498,0 chrXII 223946 . T C 4757.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.98;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4757,549,0 chrXII 224012 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=4.519;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-0.207;QD=21.80;ReadPosRankSum=1.694;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4033,482,0 chrXII 224139 . C T 4378.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.34;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4378,471,0 chrXII 224193 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=19.26;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3506,378,0 chrXII 224218 . T A 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=168;Dels=0.00;FS=9.440;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;MQRankSum=0.154;QD=18.17;ReadPosRankSum=2.318;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3085,336,0 chrXII 224232 . A T 2521 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;MQRankSum=-1.406;QD=18.27;ReadPosRankSum=1.707;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2554,276,0 chrXII 224233 . C T 2441 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=17.31;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2474,282,0 chrXII 224239 . G A 2434 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=17.26;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2467,273,0 chrXII 224270 . A G 2164 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.74;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2197,255,0 chrXII 224592 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.25;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1329,144,0 chrXII 224760 . C T 1161 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1194,126,0 chrXII 225174 . T C 4823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=4.634;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;MQRankSum=1.700;QD=22.02;ReadPosRankSum=1.684;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4823,546,0 chrXII 225226 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=19.2146;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.25;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4016,450,0 chrXII 225265 . T A 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=118.6489;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.220;QD=18.22;ReadPosRankSum=1.677;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2329,279,0 chrXII 225332 . G A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.25;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3849,423,0 chrXII 225447 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=146;Dels=0.00;FS=6.294;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.547;QD=22.45;ReadPosRankSum=2.382;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3277,366,0 chrXII 225620 . T C 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=129;Dels=0.00;FS=6.265;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.339;QD=19.83;ReadPosRankSum=2.314;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2591,303,0 chrXII 225645 . A G 2635 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.60;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2668,300,0 chrXII 225795 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.19;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2839,321,0 chrXII 225831 . T G 2698 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.48;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2731,306,0 chrXII 225921 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.04;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3255,348,0 chrXII 225953 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.124;QD=22.77;ReadPosRankSum=1.638;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3393,375,0 chrXII 225993 . A T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.62;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3377,369,0 chrXII 226119 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.406;QD=22.58;ReadPosRankSum=1.707;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3171,357,0 chrXII 226142 . G T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.59;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3320,357,0 chrXII 226203 . A G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.599;QD=21.49;ReadPosRankSum=1.652;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2827,315,0 chrXII 226236 . T C 2773 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.53;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2806,330,0 chrXII 226242 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=147;Dels=0.00;FS=3.875;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.770;QD=18.39;ReadPosRankSum=1.684;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2736,309,0 chrXII 226353 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.024;QD=21.73;ReadPosRankSum=1.708;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3228,372,0 chrXII 226438 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=145;Dels=0.00;FS=3.802;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.443;QD=22.91;ReadPosRankSum=1.684;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3322,360,0 chrXII 226560 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=164;Dels=0.00;FS=9.357;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.068;QD=19.62;ReadPosRankSum=2.908;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3250,387,0 chrXII 226566 . T C 3192 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.59;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3225,378,0 chrXII 226581 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=1.006;QD=22.46;ReadPosRankSum=1.691;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3750,420,0 chrXII 226728 . C A 4855.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.37;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,213:217:99:4855,522,0 chrXII 226740 . T G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.674;QD=21.08;ReadPosRankSum=1.715;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4280,501,0 chrXII 226806 . A G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=128;Dels=0.00;FS=3.027;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.630;QD=19.65;ReadPosRankSum=2.411;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2548,294,0 chrXII 227193 . T C 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=98;Dels=0.00;FS=3.533;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.875;QD=22.80;ReadPosRankSum=1.696;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2267,258,0 chrXII 227328 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.66;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1881,204,0 chrXII 227490 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2814,318,0 chrXII 227856 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=126;Dels=0.00;FS=8.674;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.478;QD=23.19;ReadPosRankSum=2.370;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2955,333,0 chrXII 228126 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.357;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8332;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=2.415;QD=24.13;ReadPosRankSum=1.055;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3403,350,0 chrXII 228303 . T C 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.068;QD=23.07;ReadPosRankSum=1.713;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4129,465,0 chrXII 228348 . T C 4706.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.52;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4706,549,0 chrXII 228420 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.13;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3983,432,0 chrXII 228510 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.7377;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.897;QD=18.34;ReadPosRankSum=1.649;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3095,354,0 chrXII 228527 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=148;Dels=0.00;FS=2.504;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.248;QD=16.57;ReadPosRankSum=2.897;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:3,143:148:99:2485,288,0 chrXII 228807 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.94;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1050,114,0 chrXII 228820 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.71;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1075,120,0 chrXII 228889 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.694;QD=23.91;ReadPosRankSum=1.694;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2185,249,0 chrXII 228957 . C G 2649 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.19;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2682,297,0 chrXII 228978 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.520;QD=20.73;ReadPosRankSum=1.633;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2956,333,0 chrXII 229120 . T G 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.4877;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.130;QD=22.47;ReadPosRankSum=1.717;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5302,609,0 chrXII 229136 . T G 4851.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.15;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4851,543,0 chrXII 229166 . T C 4687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=0.650;QD=20.92;ReadPosRankSum=1.670;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4687,543,0 chrXII 229358 . G A 4999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=209;Dels=0.00;FS=3.543;HaplotypeScore=15.3858;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.033;QD=23.92;ReadPosRankSum=1.682;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4999,525,0 chrXII 229498 . A T 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7668;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.380;QD=22.83;ReadPosRankSum=1.693;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4041,453,0 chrXII 229597 . T G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.20;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3758,426,0 chrXII 229618 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=23.44;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3586,399,0 chrXII 229623 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.87;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3545,396,0 chrXII 230005 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=25.83;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2900,318,0 chrXII 230090 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.617;DP=109;Dels=0.00;FS=2.528;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.196;QD=21.35;ReadPosRankSum=2.935;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2360,267,0 chrXII 230210 . G A 3967.01 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.44;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3967,438,0 chrXII 230212 . A G 3849.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=181;Dels=0.00;FS=2.843;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.839;QD=21.27;ReadPosRankSum=2.381;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3849,438,0 chrXII 230218 . G A 3790.01 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.49;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3790,432,0 chrXII 230960 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.757;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.195;QD=20.81;ReadPosRankSum=1.654;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2801,330,0 chrXII 231106 . A G 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.085;QD=19.16;ReadPosRankSum=1.647;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2370,270,0 chrXII 231281 . A T 2340 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.67;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2373,258,0 chrXII 231306 . C A 2620 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=24.04;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2653,288,0 chrXII 231430 . T C 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.278;QD=23.02;ReadPosRankSum=1.518;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1921,219,0 chrXII 231524 . C A 2351 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.18;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2384,264,0 chrXII 231529 . G A 2331 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.63;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2364,258,0 chrXII 231549 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.19;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2618,282,0 chrXII 231692 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.586;QD=23.89;ReadPosRankSum=1.678;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3067,345,0 chrXII 232046 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=0.057;QD=21.68;ReadPosRankSum=1.709;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3274,387,0 chrXII 232208 . C T 1540 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=17.30;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1573,171,0 chrXII 232468 . G A 3178 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.50;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3211,369,0 chrXII 232470 . T C 3128 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.793;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.067;QD=20.05;ReadPosRankSum=3.693;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:5,151:156:99:3161,357,0 chrXII 232471 . T C 3108 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.455;QD=19.80;ReadPosRankSum=2.891;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3141,354,0 chrXII 232561 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.83;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4716,552,0 chrXII 233075 . G T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.56;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4264,459,0 chrXII 233766 . C A 13571.01 filter AC=2;AF=1.00;AN=2;DP=571;Dels=0.00;FS=0.000;HaplotypeScore=27.8104;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.77;SB=-5.088e+03 GT:AD:DP:GQ:PL 1/1:0,565:571:99:13571,1462,0 chrXII 234128 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=185;Dels=0.00;FS=2.501;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.364;QD=21.39;ReadPosRankSum=2.940;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:3958,447,0 chrXII 234144 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.84;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3276,351,0 chrXII 234194 . G C 2242 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.98;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2275,255,0 chrXII 234378 . G C 2682 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.53;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2715,315,0 chrXII 234633 . A T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.31;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3615,390,0 chrXII 234668 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4182,456,0 chrXII 234767 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.82;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3468,381,0 chrXII 234824 . C T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.22;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4215,453,0 chrXII 235352 . C T 4929.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.30;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4929,540,0 chrXII 235684 . C T 4743.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.59;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4743,525,0 chrXII 235798 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.24;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3440,375,0 chrXII 235891 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.1604;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.32;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3459,372,0 chrXII 235940 . G C 2874 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.53;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2907,333,0 chrXII 236342 . G A 5410.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.22;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5410,600,0 chrXII 236467 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3810,429,0 chrXII 236611 . T A 3071 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.6566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3104,339,0 chrXII 236662 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6061;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.74;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3251,354,0 chrXII 237225 . G A 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.188;DP=192;Dels=0.00;FS=3.620;HaplotypeScore=20.4216;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.478;QD=23.13;ReadPosRankSum=0.263;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4441,461,0 chrXII 237608 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.98;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3765,411,0 chrXII 237673 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.05;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3757,417,0 chrXII 237728 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.066;DP=142;Dels=0.00;FS=2.945;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.253;QD=20.22;ReadPosRankSum=2.415;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2904,327,0 chrXII 237814 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.48;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2851,321,0 chrXII 237951 . T A 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.543;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.533;QD=20.98;ReadPosRankSum=1.699;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2215,240,0 chrXII 237982 . T C 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=109;Dels=0.00;FS=3.010;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.508;QD=21.98;ReadPosRankSum=1.668;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2429,267,0 chrXII 238148 . A G 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.811;HaplotypeScore=7.7459;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.510;QD=24.92;ReadPosRankSum=1.573;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2749,309,0 chrXII 238192 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=23.80;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2580,282,0 chrXII 238236 . A C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=-1.009;QD=22.29;ReadPosRankSum=1.702;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2596,291,0 chrXII 238254 . A G 2771 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=21.65;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2804,315,0 chrXII 238301 . C T 2545 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=17.80;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2578,288,0 chrXII 238302 . G A 2563 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=18.05;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2596,288,0 chrXII 238303 . T C 2566 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=144;Dels=0.01;FS=12.124;HaplotypeScore=7.2022;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=-1.303;QD=17.82;ReadPosRankSum=2.951;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2599,288,0 chrXII 238370 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=15.48;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2278,255,0 chrXII 238419 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=9.97;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1529,174,0 chrXII 238425 . A G 1436 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=9.57;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1469,168,0 chrXII 238432 . C A 1184 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;QD=8.46;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1217,135,0 chrXII 238434 . C A 1266 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;QD=9.04;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:1299,144,0 chrXII 238466 . A T 1744 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=12.64;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1777,195,0 chrXII 238492 . T C 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=144;Dels=0.00;FS=5.883;HaplotypeScore=5.0072;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-0.937;QD=17.28;ReadPosRankSum=2.951;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2521,288,0 chrXII 238547 . G T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=22.98;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3975,432,0 chrXII 238667 . C T 4452.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.71;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4452,501,0 chrXII 238758 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=21.93;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3596,414,0 chrXII 238919 . G C 3540.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.72;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3540,408,0 chrXII 238970 . C T 4287.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7987;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.08;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4287,480,0 chrXII 239186 . A G 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.224;DP=121;Dels=0.00;FS=8.270;HaplotypeScore=7.0213;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.192;QD=19.80;ReadPosRankSum=3.384;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2429,285,0 chrXII 239575 . G C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.9493;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.59;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:3809,429,0 chrXII 239804 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=19.0515;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.54;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3382,369,0 chrXII 239896 . T A 2754 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.35;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2787,306,0 chrXII 240031 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.6456;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.72;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3161,357,0 chrXII 240159 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.2378;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.47;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2977,321,0 chrXII 240376 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.58;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2532,279,0 chrXII 240627 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.82;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3501,399,0 chrXII 240793 . G A 4705.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.51;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4705,507,0 chrXII 241160 . T C 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=140;Dels=0.00;FS=11.412;HaplotypeScore=7.9131;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.395;QD=21.02;ReadPosRankSum=2.379;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2976,351,0 chrXII 241182 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=5.426;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.133;QD=22.29;ReadPosRankSum=1.684;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3220,357,0 chrXII 241422 . T C 1613 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.22;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1646,186,0 chrXII 241720 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=3.174;HaplotypeScore=11.8917;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.629;QD=21.77;ReadPosRankSum=1.681;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2994,339,0 chrXII 241757 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=167;Dels=0.00;FS=3.203;HaplotypeScore=8.7059;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.979;QD=22.01;ReadPosRankSum=1.689;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,160:167:99:3675,411,0 chrXII 241859 . T C 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=188;Dels=0.00;FS=2.599;HaplotypeScore=14.3830;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.852;QD=21.86;ReadPosRankSum=2.331;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4110,462,0 chrXII 241899 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=9.726;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.132;QD=21.96;ReadPosRankSum=2.398;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4217,483,0 chrXII 241905 . A G 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=4.937;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.232;QD=22.86;ReadPosRankSum=1.677;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4274,471,0 chrXII 242032 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.71;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3624,399,0 chrXII 242101 . C G 3855.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=21.6204;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.77;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3855,444,0 chrXII 242182 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.132;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.445;QD=23.20;ReadPosRankSum=1.713;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4223,477,0 chrXII 242432 . A G 2557 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.67;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2590,300,0 chrXII 242448 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.29;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2548,279,0 chrXII 242506 . A T 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=3.083;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.299;QD=20.52;ReadPosRankSum=1.703;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2496,276,0 chrXII 242737 . T C 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.059;QD=21.57;ReadPosRankSum=1.673;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3796,438,0 chrXII 242983 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.9378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3850,420,0 chrXII 243426 . C T 1209 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=13.3442;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.04;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1242,147,0 chrXII 243642 . C A 107.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.92;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:140,15,0 chrXII 243663 . A G 124.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.34;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:18:157,18,0 chrXII 243690 . C G 100.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.03;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:15:133,15,0 chrXII 243694 . A G 100.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.14;SB=-1.078e+02 GT:AD:DP:GQ:PL 1/1:0,9:9:15:133,15,0 chrXII 243704 . A T 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.07;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:110,12,0 chrXII 243705 . T C 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.64;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:107,12,0 chrXII 243711 . G A 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=9.06;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:105,12,0 chrXII 243795 . T C 718 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.44;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:87:751,87,0 chrXII 243937 . A G 1522 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.06;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1555,183,0 chrXII 244048 . G A 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.155;DP=115;Dels=0.00;FS=4.364;HaplotypeScore=15.5473;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.021;QD=21.83;ReadPosRankSum=0.186;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,111:115:99:2544,267,0 chrXII 244131 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.59;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3615,399,0 chrXII 244156 . T C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.131;QD=21.93;ReadPosRankSum=1.674;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2687,309,0 chrXII 244378 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6417;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.07;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3530,381,0 chrXII 244405 . C A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.32;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3614,405,0 chrXII 244615 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.22;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2726,294,0 chrXII 244672 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.04;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3280,360,0 chrXII 244708 . T C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.282;QD=22.79;ReadPosRankSum=1.678;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2996,342,0 chrXII 245026 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=160;Dels=0.00;FS=6.040;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.545;QD=21.53;ReadPosRankSum=2.943;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:3,154:160:99:3445,390,0 chrXII 245137 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3475,393,0 chrXII 245178 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.89;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3433,384,0 chrXII 245308 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.31;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2978,318,0 chrXII 245579 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.82;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4479,498,0 chrXII 245635 . C T 5349.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.11;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5349,579,0 chrXII 245833 . A G 5733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=254;Dels=0.00;FS=3.293;HaplotypeScore=15.3408;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.491;QD=22.57;ReadPosRankSum=1.718;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5733,633,0 chrXII 245980 . A G 5505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=259;Dels=0.00;FS=2.998;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.355;QD=21.25;ReadPosRankSum=2.374;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:2,257:259:99:5505,615,0 chrXII 246210 . G A 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=25.2613;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.577;QD=14.29;ReadPosRankSum=-0.577;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:1719,189,0 chrXII 246274 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.01;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2146,240,0 chrXII 246315 . T A 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.313;QD=23.03;ReadPosRankSum=1.699;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2451,282,0 chrXII 246534 . A G 5075.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.71;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5075,576,0 chrXII 246798 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.87;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3485,375,0 chrXII 246804 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.90;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3427,381,0 chrXII 246946 . G T 3114 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.95;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3147,345,0 chrXII 246984 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.17;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3048,342,0 chrXII 247140 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=132;Dels=0.00;FS=2.985;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.753;QD=21.64;ReadPosRankSum=2.373;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,127:132:99:2889,327,0 chrXII 247370 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=17.20;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3112,348,0 chrXII 247374 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=16.99;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3006,348,0 chrXII 247387 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=14.39;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2580,300,0 chrXII 247393 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=192;Dels=0.00;FS=6.029;HaplotypeScore=9.3753;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-1.279;QD=14.44;ReadPosRankSum=2.932;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:2806,309,0 chrXII 247449 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.49;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3291,369,0 chrXII 247833 . C T 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.206;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.688;QD=21.90;ReadPosRankSum=0.892;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3077,336,0 chrXII 248314 . C G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.89;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3273,369,0 chrXII 248381 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=149;Dels=0.00;FS=10.434;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.503;QD=22.74;ReadPosRankSum=2.925;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3388,375,0 chrXII 248398 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.060;QD=22.75;ReadPosRankSum=1.708;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3322,372,0 chrXII 248551 . A G 2466 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.74;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2499,285,0 chrXII 248559 . G T 2688 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.93;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2721,294,0 chrXII 248615 . A G 2505 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.04;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2538,282,0 chrXII 248656 . G T 2131 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.74;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2164,234,0 chrXII 248671 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.91;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1848,207,0 chrXII 248752 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.44;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4286,492,0 chrXII 249052 . A C 3630.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.11;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3630,420,0 chrXII 249353 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.23;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4361,480,0 chrXII 249539 . G A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4161,477,0 chrXII 249616 . T G 3184 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.28;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3217,375,0 chrXII 249640 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.44;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3495,384,0 chrXII 249689 . G A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.07;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3996,432,0 chrXII 249743 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.6271;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.99;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3496,396,0 chrXII 249826 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.8267;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.36;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3096,345,0 chrXII 250025 . T G 2445 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2478,276,0 chrXII 250337 . C G 4088.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=22.46;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4088,465,0 chrXII 250359 . C T 4620.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.43;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4620,510,0 chrXII 250412 . A G 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=268;Dels=0.00;FS=4.854;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.886;QD=18.66;ReadPosRankSum=1.706;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,265:268:99:5001,558,0 chrXII 250415 . G A 5087.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.91;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5087,561,0 chrXII 250571 . G A 5407.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=21.04;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5407,591,0 chrXII 250583 . T A 5490.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=2.8427;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.12;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5490,597,0 chrXII 250588 . A G 5183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.791;DP=266;Dels=0.00;FS=7.606;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-1.158;QD=19.48;ReadPosRankSum=3.785;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:5,260:266:99:5183,588,0 chrXII 250697 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.663;DP=166;Dels=0.00;FS=5.233;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.258;QD=20.22;ReadPosRankSum=2.957;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3357,381,0 chrXII 250711 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.28;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3246,354,0 chrXII 251232 . T C 918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=66;Dels=0.00;FS=3.912;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.462;QD=13.91;ReadPosRankSum=1.678;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:951,108,0 chrXII 251635 . T C 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.928;DP=229;Dels=0.00;FS=10.767;HaplotypeScore=18.0968;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.230;QD=20.67;ReadPosRankSum=4.048;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:6,223:229:99:4734,534,0 chrXII 251697 . C T 6036.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=15.7367;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.33;SB=-3.481e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:6036,663,0 chrXII 251885 . C T 4772.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.97;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4772,513,0 chrXII 252072 . G T 4294.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.3217;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.58;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4294,471,0 chrXII 252507 . A G 5452.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.0204;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.70;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5452,609,0 chrXII 252615 . T G 6799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=314;Dels=0.00;FS=7.987;HaplotypeScore=23.3614;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=1.906;QD=21.65;ReadPosRankSum=3.416;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:4,306:314:99:6799,789,0 chrXII 252766 . T A 9144.01 filter AC=2;AF=1.00;AN=2;DP=511;Dels=0.00;FS=0.000;HaplotypeScore=28.1135;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=17.89;SB=-4.943e+03 GT:AD:DP:GQ:PL 1/1:0,511:511:99:9144,1008,0 chrXII 252779 . C G 2547 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.108;DP=525;Dels=0.00;FS=14.869;HaplotypeScore=694.8409;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=-5.412;QD=4.85;ReadPosRankSum=-17.668;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:332,191:525:99:2580,297,0 chrXII 252885 . C A 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;DP=259;Dels=0.00;FS=56.072;HaplotypeScore=1554.4146;MLEAC=1;MLEAF=0.500;MQ=32.47;MQ0=0;MQRankSum=4.883;QD=0.35;ReadPosRankSum=-5.416;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:247,12:259:99:121,0,210 chrXII 252900 . C A 95.26 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=401.5506;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=0.37;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:15:128,15,0 chrXII 252922 . C G 4138.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.880;DP=393;Dels=0.00;FS=2.938;HaplotypeScore=15.7251;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;MQRankSum=0.072;QD=10.53;ReadPosRankSum=-0.066;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:2,390:393:99:4138,480,0 chrXII 253274 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=17.3814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.444;QD=21.01;ReadPosRankSum=1.710;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3298,372,0 chrXII 253791 . T G 3141 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3174,366,0 chrXII 253941 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.3819;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.386;QD=22.44;ReadPosRankSum=1.667;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3591,405,0 chrXII 254321 . T C 6502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=279;Dels=0.00;FS=12.328;HaplotypeScore=16.6474;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.512;QD=23.30;ReadPosRankSum=3.398;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:4,274:279:99:6502,732,0 chrXII 254610 . A G 6512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=319;Dels=0.00;FS=2.943;HaplotypeScore=21.9158;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.946;QD=20.41;ReadPosRankSum=2.434;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:2,313:319:99:6512,750,0 chrXII 254773 . C T 4947.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=16.4633;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.44;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:4947,534,0 chrXII 255134 . T C 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.466;QD=22.09;ReadPosRankSum=1.618;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2065,234,0 chrXII 255317 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2683,297,0 chrXII 255485 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4235;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.453;QD=23.51;ReadPosRankSum=2.346;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3362,384,0 chrXII 255522 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.64;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3901,426,0 chrXII 255647 . T C 4646.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.02;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4646,543,0 chrXII 255736 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=3.816;HaplotypeScore=8.7210;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.429;QD=19.73;ReadPosRankSum=1.675;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3610,411,0 chrXII 255818 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=155;Dels=0.00;FS=4.316;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.192;QD=21.65;ReadPosRankSum=1.687;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3355,372,0 chrXII 256154 . T A 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.127;QD=21.66;ReadPosRankSum=1.650;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2762,309,0 chrXII 256166 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=136;Dels=0.00;FS=2.630;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.147;QD=20.10;ReadPosRankSum=2.413;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2766,312,0 chrXII 256202 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.079;QD=20.09;ReadPosRankSum=2.416;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3006,342,0 chrXII 256271 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.27;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3607,414,0 chrXII 256406 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.82;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3491,378,0 chrXII 256693 . A G 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=97;Dels=0.00;FS=6.349;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.428;QD=23.08;ReadPosRankSum=0.194;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,93:97:99:2272,234,0 chrXII 256727 . T C 2144 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.30;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2177,249,0 chrXII 257091 . G C 3973.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.07;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3973,450,0 chrXII 257195 . C A 2874 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.29;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2907,315,0 chrXII 257291 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.38;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3442,378,0 chrXII 257316 . G T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.84;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3376,369,0 chrXII 257334 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=174;Dels=0.02;FS=3.612;HaplotypeScore=13.7710;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.143;QD=19.88;ReadPosRankSum=1.712;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3459,384,0 chrXII 257388 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.33;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3520,393,0 chrXII 257504 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=166;Dels=0.00;FS=5.830;HaplotypeScore=6.1199;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.127;QD=22.46;ReadPosRankSum=2.958;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3729,432,0 chrXII 257654 . A G 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=193;Dels=0.00;FS=3.291;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=1.137;QD=21.42;ReadPosRankSum=1.660;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4134,471,0 chrXII 257669 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=182;Dels=0.00;FS=1.999;HaplotypeScore=9.9851;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.043;QD=21.07;ReadPosRankSum=3.334;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:4,177:182:99:3835,444,0 chrXII 257813 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.405;QD=23.85;ReadPosRankSum=1.708;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3387,372,0 chrXII 258349 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=2.863;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.948;QD=23.70;ReadPosRankSum=2.407;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4147,465,0 chrXII 258577 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=4.030;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.967;QD=23.04;ReadPosRankSum=1.712;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4009,450,0 chrXII 258730 . A T 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.8347;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.129;QD=22.40;ReadPosRankSum=1.677;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4212,465,0 chrXII 259051 . C T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.0836;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.29;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4469,483,0 chrXII 259126 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=17.7003;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.93;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3474,393,0 chrXII 259210 . G A 5640.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.4366;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.90;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5640,604,0 chrXII 259471 . G T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.09;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3510,390,0 chrXII 260086 . C T 5726.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=19.8148;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.45;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5726,630,0 chrXII 260298 . G A 7847.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=16.8603;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.62;SB=-4.574e+03 GT:AD:DP:GQ:PL 1/1:0,359:363:99:7847,853,0 chrXII 260323 . A G 7097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.711;DP=356;Dels=0.00;FS=11.201;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.077;QD=19.94;ReadPosRankSum=3.807;SB=-3.868e+03 GT:AD:DP:GQ:PL 1/1:5,350:356:99:7097,810,0 chrXII 260496 . G A 5030.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.6299;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.36;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5030,546,0 chrXII 260749 . C A 2283 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.78;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2316,255,0 chrXII 261053 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.08;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3731,432,0 chrXII 261101 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.43;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4464,480,0 chrXII 261119 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.08;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4460,486,0 chrXII 261578 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=190;Dels=0.00;FS=2.975;HaplotypeScore=6.6121;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-2.062;QD=21.91;ReadPosRankSum=2.333;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4162,477,0 chrXII 261605 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.54;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4128,450,0 chrXII 261617 . G C 3744.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.35;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:3744,438,0 chrXII 261641 . C T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.45;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3618,390,0 chrXII 261797 . T C 5142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=16.7456;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.512;QD=19.26;ReadPosRankSum=1.706;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:5142,602,0 chrXII 262070 . T C 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=244;Dels=0.00;FS=22.177;HaplotypeScore=25.0792;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.473;QD=21.00;ReadPosRankSum=3.808;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:5,233:244:99:5123,573,0 chrXII 262322 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.70;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3460,384,0 chrXII 262367 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.89;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2995,336,0 chrXII 262794 . G A 445 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=12.36;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:51:478,51,0 chrXII 262933 . T C 1045 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.762;QD=20.49;ReadPosRankSum=1.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,49:51:99:1078,123,0 chrXII 262942 . T A 995 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.31;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1028,111,0 chrXII 263039 . G T 2674 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.06;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2707,291,0 chrXII 263065 . A G 2325 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=17.75;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2358,267,0 chrXII 263142 . G C 1929 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.68;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1962,219,0 chrXII 263151 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.42;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2197,246,0 chrXII 263230 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.9593;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.87;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3270,354,0 chrXII 264066 . G A 332 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.53;SB=-8.200e+01 GT:AD:DP:GQ:PL 1/1:0,16:17:39:365,39,0 chrXII 264201 . T C 1226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.863;QD=23.58;ReadPosRankSum=2.747;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:3,49:52:99:1259,144,0 chrXII 264597 . C A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.9050;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4088,459,0 chrXII 264903 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.64;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3375,363,0 chrXII 264939 . A G 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.538;QD=22.87;ReadPosRankSum=1.711;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3682,411,0 chrXII 265047 . T C 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.449;QD=24.88;ReadPosRankSum=1.689;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3981,447,0 chrXII 265441 . T A 1644 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1677,183,0 chrXII 265975 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.05;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3087,333,0 chrXII 266094 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=151;Dels=0.00;FS=2.707;HaplotypeScore=9.4159;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.876;QD=22.60;ReadPosRankSum=2.400;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3412,384,0 chrXII 266280 . T C 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=102;Dels=0.00;FS=4.202;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.208;QD=20.83;ReadPosRankSum=1.663;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2158,252,0 chrXII 266454 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.96;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2580,279,0 chrXII 266577 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.36;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3824,423,0 chrXII 266628 . T G 3180 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.21;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3213,360,0 chrXII 266899 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.47;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3001,330,0 chrXII 266973 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=14.7565;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.15;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2229,252,0 chrXII 267117 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3344,360,0 chrXII 267423 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2909,327,0 chrXII 268023 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.47;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3061,330,0 chrXII 268181 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=147;Dels=0.00;FS=6.801;HaplotypeScore=11.2431;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.187;QD=20.84;ReadPosRankSum=2.365;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3096,348,0 chrXII 268253 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.76;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3516,393,0 chrXII 268836 . C T 1482 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.0868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.70;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1515,165,0 chrXII 269037 . T A 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.1113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.270;QD=22.39;ReadPosRankSum=1.655;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3056,348,0 chrXII 269133 . T G 3699.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.55;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3699,426,0 chrXII 269349 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.7793;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.51;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3668,390,0 chrXII 269358 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3684;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.28;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3365,366,0 chrXII 269473 . G T 5728.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.6450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5728,619,0 chrXII 269565 . A G 5055.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.8124;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.98;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5055,593,0 chrXII 269839 . A C 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8798;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.613;QD=22.51;ReadPosRankSum=1.697;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4390,489,0 chrXII 270392 . T C 3058 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.32;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3091,348,0 chrXII 270995 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3142,354,0 chrXII 271951 . G A 5965.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.4034;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.76;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5965,646,0 chrXII 272455 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.85;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3530,390,0 chrXII 272572 . A G 4361.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.78;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4361,483,0 chrXII 272710 . T C 5368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.8519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.029;QD=22.37;ReadPosRankSum=1.214;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:3,236:240:99:5368,600,0 chrXII 272974 . A G 5213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=243;Dels=0.00;FS=2.609;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.510;QD=21.45;ReadPosRankSum=2.419;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:5213,594,0 chrXII 273019 . T C 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=207;Dels=0.00;FS=3.730;HaplotypeScore=19.7170;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.408;QD=19.51;ReadPosRankSum=1.715;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:2,202:207:99:4039,459,0 chrXII 273722 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.76;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3391,366,0 chrXII 274041 . A G 640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.459;QD=16.84;ReadPosRankSum=1.641;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:75:673,75,0 chrXII 274098 . T C 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.582;QD=17.83;ReadPosRankSum=1.657;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:96:853,96,0 chrXII 274115 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.99;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1222,138,0 chrXII 274243 . G C 3042 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.34;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3075,348,0 chrXII 274580 . G C 5209.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.12;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5209,585,0 chrXII 274968 . C T 4367.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4367,477,0 chrXII 275011 . C T 4790.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.8142;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.70;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4790,525,0 chrXII 275057 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.91;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3872,414,0 chrXII 275125 . T G 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=9.461;HaplotypeScore=6.1922;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.065;QD=18.71;ReadPosRankSum=1.601;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2035,231,0 chrXII 275287 . C T 753 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.37;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:87:786,87,0 chrXII 276029 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.66;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2848,309,0 chrXII 276224 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.06;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3016,330,0 chrXII 276795 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.65;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3903,423,0 chrXII 276866 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3854;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.12;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3032,333,0 chrXII 277094 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.89;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2345,255,0 chrXII 277307 . T C 2369 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2402,273,0 chrXII 277574 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.77;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3123,351,0 chrXII 277652 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8534;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.75;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3539,390,0 chrXII 277688 . A G 2321 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.10;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2354,273,0 chrXII 277961 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3382,372,0 chrXII 278475 . T A 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=3.471;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.605;QD=21.21;ReadPosRankSum=1.712;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3585,387,0 chrXII 278491 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.48;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3720,420,0 chrXII 278527 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.92;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3745,402,0 chrXII 278546 . C G 3713.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.8669;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.66;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3713,417,0 chrXII 278659 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.56;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3202,360,0 chrXII 278673 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.66;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3303,369,0 chrXII 278823 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=3.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-1.338;QD=21.01;ReadPosRankSum=2.349;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3121,366,0 chrXII 278845 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.67;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3348,363,0 chrXII 278861 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.456;QD=19.39;ReadPosRankSum=1.671;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3355,381,0 chrXII 279188 . G C 2606 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.36;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2639,309,0 chrXII 279403 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.59;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2639,285,0 chrXII 279509 . G A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.51;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3856,417,0 chrXII 279533 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.211;QD=22.02;ReadPosRankSum=1.669;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,163:169:99:3722,429,0 chrXII 280412 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.69;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4025,432,0 chrXII 281289 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=111;Dels=0.00;FS=6.113;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.537;QD=22.82;ReadPosRankSum=2.900;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2566,288,0 chrXII 281810 . T A 212.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.014;DP=96;Dels=0.00;FS=3.715;HaplotypeScore=42.9807;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=2.563;QD=2.21;ReadPosRankSum=1.872;SB=-7.533e+02 GT:AD:DP:GQ:PL 1/1:17,79:96:14:245,14,0 chrXII 281811 . T A 207.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=92;Dels=0.00;FS=0.939;HaplotypeScore=42.9807;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=1.311;QD=2.25;ReadPosRankSum=3.138;SB=-7.163e+02 GT:AD:DP:GQ:PL 1/1:20,72:92:14:240,14,0 chrXII 281896 . A C 2839 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.53;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2872,333,0 chrXII 282215 . C T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=20.7174;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.76;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4838,525,0 chrXII 282385 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.9468;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.59;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3457,381,0 chrXII 282626 . A G 1391 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.76;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1424,162,0 chrXII 282741 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.47;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1493,162,0 chrXII 283463 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.110;QD=21.02;ReadPosRankSum=2.401;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2156,243,0 chrXII 283638 . A T 549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.200;QD=21.12;ReadPosRankSum=1.600;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:63:582,63,0 chrXII 283719 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.97;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,86:91:99:1941,210,0 chrXII 283731 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.18;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2448,270,0 chrXII 284270 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.443;QD=22.95;ReadPosRankSum=1.712;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3948,444,0 chrXII 284424 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.44;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3352,372,0 chrXII 284594 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.20;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3796,426,0 chrXII 284627 . A T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4141,465,0 chrXII 284813 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.375;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.976;QD=23.13;ReadPosRankSum=1.692;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4071,465,0 chrXII 284942 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.61;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3231,360,0 chrXII 284957 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.10;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3240,351,0 chrXII 284978 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.5200;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.52;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3723,408,0 chrXII 285577 . G T 2885 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2918,315,0 chrXII 285611 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.58;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2878,309,0 chrXII 285823 . T C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=128;Dels=0.00;FS=2.592;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.849;QD=22.32;ReadPosRankSum=2.929;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2890,327,0 chrXII 285976 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.29;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3299,378,0 chrXII 286225 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.55;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2559,282,0 chrXII 286333 . T C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=111;Dels=0.00;FS=2.894;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.610;QD=21.36;ReadPosRankSum=2.405;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2404,267,0 chrXII 286350 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.39;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2450,267,0 chrXII 286840 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.3197;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.88;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3917,465,0 chrXII 287319 . T C 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=190;Dels=0.00;FS=3.030;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.097;QD=22.90;ReadPosRankSum=2.411;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4351,480,0 chrXII 288047 . A G 4892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.0072;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.225;QD=24.58;ReadPosRankSum=1.697;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4892,561,0 chrXII 288269 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=16.4274;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.89;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3616,387,0 chrXII 288347 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=16.35;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2322,258,0 chrXII 288349 . A G 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=3.979;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.891;QD=16.06;ReadPosRankSum=1.559;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2298,255,0 chrXII 288473 . T C 4910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=221;Dels=0.00;FS=5.622;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.502;QD=22.22;ReadPosRankSum=2.895;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:3,217:221:99:4910,552,0 chrXII 288491 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.15;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4475,486,0 chrXII 288614 . A G 5242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.3456;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.493;QD=22.50;ReadPosRankSum=1.702;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:5242,612,0 chrXII 288686 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=204;Dels=0.00;FS=2.810;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.149;QD=22.90;ReadPosRankSum=2.389;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4672,522,0 chrXII 288976 . A T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.7984;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.03;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4214,471,0 chrXII 289291 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.28;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2096,234,0 chrXII 289538 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.32;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3367,366,0 chrXII 289627 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=21.20;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3171,360,0 chrXII 289646 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=18.36;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2953,318,0 chrXII 289660 . C G 2503 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=16.25;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2536,285,0 chrXII 289669 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=16.84;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2728,297,0 chrXII 289700 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=3.979;HaplotypeScore=4.2769;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-0.346;QD=16.99;ReadPosRankSum=1.711;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2853,318,0 chrXII 289908 . T G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.648;QD=22.51;ReadPosRankSum=1.435;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,162:167:99:3759,402,0 chrXII 289997 . A G 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.416;QD=23.43;ReadPosRankSum=1.678;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3056,348,0 chrXII 290233 . A G 3120 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=24.96;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3153,354,0 chrXII 290328 . T C 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=2.781;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.336;QD=22.13;ReadPosRankSum=2.400;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2246,255,0 chrXII 290359 . T C 2723 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.08;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2756,309,0 chrXII 290479 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3523,390,0 chrXII 290784 . C T 5019.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5019,552,0 chrXII 291102 . A C 4491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=206;Dels=0.00;FS=2.932;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.779;QD=21.80;ReadPosRankSum=2.426;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4491,522,0 chrXII 291384 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=128;Dels=0.00;FS=3.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.487;QD=19.73;ReadPosRankSum=1.705;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2558,285,0 chrXII 291386 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=129;Dels=0.00;FS=9.452;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.087;QD=18.98;ReadPosRankSum=2.850;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:3,124:129:99:2482,291,0 chrXII 293464 . C T 1904 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.7441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1937,213,0 chrXII 293839 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.10;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2251,243,0 chrXII 294106 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1839,210,0 chrXII 294289 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.63;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3276,366,0 chrXII 295045 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.5767;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.60;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2798,306,0 chrXII 295063 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=3.001;HaplotypeScore=3.9429;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.083;QD=18.36;ReadPosRankSum=2.339;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2475,288,0 chrXII 295222 . C T 4247.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.27;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4247,459,0 chrXII 295250 . T C 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.344;QD=22.30;ReadPosRankSum=2.372;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4237,471,0 chrXII 295292 . C T 4895.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.2719;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.76;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4895,534,0 chrXII 295360 . C T 5825.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.1066;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.47;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5825,631,0 chrXII 296182 . C A 2537 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.49;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2570,282,0 chrXII 296228 . A G 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.734;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7739;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.150;QD=18.98;ReadPosRankSum=3.275;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:4,84:91:99:1760,201,0 chrXII 296236 . C A 1736 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.70;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1769,192,0 chrXII 296355 . T C 810 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:843,96,0 chrXII 296473 . C T 564 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.89;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:69:597,69,0 chrXII 296997 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.59;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2537,273,0 chrXII 297011 . A T 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=4.051;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.795;QD=20.13;ReadPosRankSum=1.619;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2489,279,0 chrXII 297157 . G T 3074 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.79;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3107,336,0 chrXII 297193 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=130;Dels=0.00;FS=9.873;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.664;QD=23.15;ReadPosRankSum=2.836;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:3042,339,0 chrXII 297855 . G T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.74;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3442,378,0 chrXII 298137 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=2.879;HaplotypeScore=4.2825;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.244;QD=21.89;ReadPosRankSum=2.418;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3415,375,0 chrXII 298142 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.83;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3271,366,0 chrXII 298416 . T G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.272;QD=21.26;ReadPosRankSum=0.866;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3073,345,0 chrXII 298644 . A G 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=4.416;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.142;QD=21.42;ReadPosRankSum=1.658;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3074,348,0 chrXII 298872 . A G 5309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=236;Dels=0.00;FS=7.162;HaplotypeScore=7.2169;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.905;QD=22.50;ReadPosRankSum=2.407;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:2,230:236:99:5309,597,0 chrXII 298893 . C T 5640.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.3294;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.38;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5640,624,0 chrXII 299037 . A G 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.407;QD=20.92;ReadPosRankSum=1.696;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4038,474,0 chrXII 299174 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9904;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.43;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3409,378,0 chrXII 299209 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2899,315,0 chrXII 299315 . G T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.22;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3578,387,0 chrXII 299490 . A G 2389 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.52;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2422,276,0 chrXII 299526 . A C 2489 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=18.71;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2522,297,0 chrXII 299532 . A G 2739 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.59;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2772,315,0 chrXII 300182 . C G 3043 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.37;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3076,351,0 chrXII 300539 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.98;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2627,297,0 chrXII 300946 . A G 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.496;QD=20.42;ReadPosRankSum=1.717;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:4819,552,0 chrXII 301171 . T C 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=185;Dels=0.00;FS=3.429;HaplotypeScore=14.2208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.152;QD=23.26;ReadPosRankSum=1.695;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4304,480,0 chrXII 301291 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.58;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4020,450,0 chrXII 301472 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.065;DP=209;Dels=0.00;FS=14.342;HaplotypeScore=8.8355;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.099;QD=22.62;ReadPosRankSum=4.113;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:6,203:209:99:4728,528,0 chrXII 301852 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.76;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3721,420,0 chrXII 301930 . G C 3844.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.7949;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.09;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3844,450,0 chrXII 302004 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=160;Dels=0.00;FS=5.712;HaplotypeScore=12.7509;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=2.340;QD=20.11;ReadPosRankSum=2.918;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3250,378,0 chrXII 302144 . T C 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=208;Dels=0.00;FS=6.082;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.877;QD=19.91;ReadPosRankSum=2.927;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:3,202:208:99:4141,471,0 chrXII 302282 . T G 2995 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.8303;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.86;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3028,339,0 chrXII 302332 . T A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.85;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3336,363,0 chrXII 302346 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.161;QD=20.35;ReadPosRankSum=1.711;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3297,372,0 chrXII 302440 . A G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.408;QD=19.50;ReadPosRankSum=1.707;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:2744,315,0 chrXII 302671 . G C 2385 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.11;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2418,273,0 chrXII 302717 . C T 2328 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=19.73;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2361,258,0 chrXII 302719 . A G 2271 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.08;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2304,261,0 chrXII 302764 . A T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.3859;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.04;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3451,375,0 chrXII 302944 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-1.626;QD=21.86;ReadPosRankSum=1.648;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3585,411,0 chrXII 303043 . A C 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.065;QD=22.68;ReadPosRankSum=1.602;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3049,342,0 chrXII 303487 . C A 1648 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1681,183,0 chrXII 303601 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.08;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2267,243,0 chrXII 303604 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.78;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2236,243,0 chrXII 303836 . A G 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.364;QD=22.92;ReadPosRankSum=1.695;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2210,255,0 chrXII 303878 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.36;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2813,318,0 chrXII 304031 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2160,234,0 chrXII 304265 . G T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3613,390,0 chrXII 304381 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3400,387,0 chrXII 304627 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.18;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3676,405,0 chrXII 305324 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3122,336,0 chrXII 305731 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.3715;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.955;QD=23.28;ReadPosRankSum=1.710;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3632,402,0 chrXII 305929 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3311,372,0 chrXII 306706 . A C 1720 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.9801;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.23;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1753,204,0 chrXII 308379 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.54;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3812,429,0 chrXII 308384 . C A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.31;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3815,414,0 chrXII 308630 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.07;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2983,321,0 chrXII 308637 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4213;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.99;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:2891,312,0 chrXII 308703 . T C 2576 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.66;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2609,306,0 chrXII 308802 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.98;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3273,354,0 chrXII 308864 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.02;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2795,303,0 chrXII 309139 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.3242;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.09;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2883,330,0 chrXII 309672 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.44;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3235,348,0 chrXII 309962 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.147;QD=22.16;ReadPosRankSum=1.685;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3280,360,0 chrXII 310404 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.50;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2373,270,0 chrXII 310983 . T C 2803 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2836,321,0 chrXII 311052 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.154;QD=19.02;ReadPosRankSum=2.369;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2924,336,0 chrXII 311340 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.44;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2995,339,0 chrXII 311412 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.680;QD=23.85;ReadPosRankSum=1.706;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3253,363,0 chrXII 311493 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.27;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3139,342,0 chrXII 311508 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.44;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3161,354,0 chrXII 311691 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5823;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.38;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3154,345,0 chrXII 312120 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2989,339,0 chrXII 312573 . T C 2111 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.37;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2144,246,0 chrXII 312576 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.84;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2105,231,0 chrXII 312981 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=17.53;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2119,246,0 chrXII 312984 . T A 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.713;QD=19.05;ReadPosRankSum=1.703;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2300,249,0 chrXII 313107 . T G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=16.6440;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.415;QD=20.25;ReadPosRankSum=1.659;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2929,348,0 chrXII 313197 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=20.95;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2735,312,0 chrXII 313203 . A T 2786 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=21.60;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2819,315,0 chrXII 313320 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.23;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3239,378,0 chrXII 314478 . T C 2492 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2525,297,0 chrXII 314762 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.11;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2123,234,0 chrXII 314849 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.70;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2121,237,0 chrXII 315048 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.62;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2726,315,0 chrXII 315348 . G C 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.7667;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.694;QD=21.87;ReadPosRankSum=0.731;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2001,228,0 chrXII 315383 . T C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=101;Dels=0.00;FS=6.154;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.354;QD=21.20;ReadPosRankSum=2.889;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:3,97:101:99:2174,249,0 chrXII 315516 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.98;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3199,345,0 chrXII 315642 . T C 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=92;Dels=0.00;FS=7.202;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.149;QD=22.34;ReadPosRankSum=2.396;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:2088,243,0 chrXII 316064 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.795;QD=22.67;ReadPosRankSum=1.715;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4692,531,0 chrXII 316223 . A C 4535.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.45;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4535,528,0 chrXII 316490 . G A 4940.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.56;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4940,534,0 chrXII 316496 . T C 4424.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.39;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4424,513,0 chrXII 316628 . T C 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.9773;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.702;QD=20.26;ReadPosRankSum=1.702;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4599,531,0 chrXII 316649 . T C 5008.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.56;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5008,552,0 chrXII 316748 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.79;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3334,363,0 chrXII 316943 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.3849;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.19;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2654,288,0 chrXII 317117 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.17;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2294,249,0 chrXII 318011 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3283,363,0 chrXII 318672 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.768;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.277;QD=22.96;ReadPosRankSum=-0.462;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3444,375,0 chrXII 319560 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.79;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3395,378,0 chrXII 319635 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=178;Dels=0.00;FS=12.292;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.133;QD=20.78;ReadPosRankSum=3.410;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:4,173:178:99:3699,426,0 chrXII 319960 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=137;Dels=0.00;FS=2.833;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.895;QD=22.92;ReadPosRankSum=2.395;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3173,354,0 chrXII 320465 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.05;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3085,339,0 chrXII 320469 . T C 2919 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.99;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2952,333,0 chrXII 320997 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2717,297,0 chrXII 322903 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.20;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2542,282,0 chrXII 323570 . T A 2561 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6107;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.46;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2594,294,0 chrXII 324050 . G T 6270.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.76;SB=-3.606e+03 GT:AD:DP:GQ:PL 1/1:0,300:302:99:6270,684,0 chrXII 325206 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.66;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3769,408,0 chrXII 325937 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.58;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3537,396,0 chrXII 326213 . A G 2097 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7219;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.56;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2130,237,0 chrXII 326929 . C T 5132.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.01;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5132,567,0 chrXII 326975 . C T 4514.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.39;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4514,507,0 chrXII 326981 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=208;Dels=0.00;FS=9.885;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.088;QD=20.72;ReadPosRankSum=2.917;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:3,203:208:99:4310,495,0 chrXII 327112 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.13;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4094,459,0 chrXII 327373 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.036;DP=113;Dels=0.00;FS=2.599;HaplotypeScore=12.0694;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.339;QD=21.31;ReadPosRankSum=0.381;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2441,244,0 chrXII 327504 . A T 915 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.015;QD=18.30;ReadPosRankSum=2.352;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:948,108,0 chrXII 327506 . C A 918 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=19.12;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:951,105,0 chrXII 327514 . A T 956 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.12;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:989,111,0 chrXII 328075 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=20.84;ReadPosRankSum=1.712;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3543,405,0 chrXII 328990 . A G 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=262;Dels=0.00;FS=6.808;HaplotypeScore=20.2218;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.506;QD=20.84;ReadPosRankSum=2.374;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:5461,633,0 chrXII 329551 . G C 3116 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=20.91;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3149,348,0 chrXII 329556 . A T 3039 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=0.058;QD=20.40;ReadPosRankSum=1.616;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3072,339,0 chrXII 329557 . T C 2977 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.11;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3010,342,0 chrXII 329740 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=9.641;DP=268;Dels=0.00;FS=6.596;HaplotypeScore=15.3830;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;MQRankSum=1.238;QD=12.49;ReadPosRankSum=8.969;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:69,199:268:99:3347,283,0 chrXII 329746 . C T 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=9.878;DP=261;Dels=0.00;FS=10.104;HaplotypeScore=23.7049;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;MQRankSum=0.762;QD=10.52;ReadPosRankSum=-4.998;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:85,176:261:99:2778,157,0 chrXII 329756 . T G 1479.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DP=246;Dels=0.00;FS=9.097;HaplotypeScore=138.0513;MLEAC=1;MLEAF=0.500;MQ=40.09;MQ0=0;MQRankSum=-2.724;QD=6.01;ReadPosRankSum=-10.574;SB=-3.586e+02 GT:AD:DP:GQ:PL 0/1:110,136:246:5:1509,0,5 chrXII 330320 . G T 4597.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.5374;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.25;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4597,534,0 chrXII 330526 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.49;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2615,303,0 chrXII 331075 . G C 2780 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.29;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2813,324,0 chrXII 331090 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.753;QD=19.63;ReadPosRankSum=1.707;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2761,318,0 chrXII 331267 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=24.13;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3668,396,0 chrXII 331273 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-1.284;QD=23.21;ReadPosRankSum=1.685;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3412,384,0 chrXII 331625 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.658;QD=23.23;ReadPosRankSum=-0.774;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3298,347,0 chrXII 331872 . T A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.86;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3531,381,0 chrXII 331984 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.44;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3492,378,0 chrXII 332094 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.31;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3726,402,0 chrXII 332159 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.00;FS=3.037;HaplotypeScore=5.0063;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.009;QD=19.37;ReadPosRankSum=2.398;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2841,330,0 chrXII 332162 . G T 2975 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.4625;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.57;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3008,327,0 chrXII 332441 . A C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.018;QD=20.87;ReadPosRankSum=1.711;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3444,381,0 chrXII 332859 . A T 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.5850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.463;QD=22.00;ReadPosRankSum=1.629;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4445,480,0 chrXII 333012 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.70;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2939,321,0 chrXII 333217 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8980;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.72;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3212,345,0 chrXII 333360 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3488,393,0 chrXII 333469 . T C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.142;QD=21.75;ReadPosRankSum=1.658;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3100,345,0 chrXII 333486 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.15;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3100,342,0 chrXII 333534 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.15;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3176,348,0 chrXII 333672 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.58;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4375,477,0 chrXII 334170 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3416,381,0 chrXII 334365 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.3112;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.11;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3825,432,0 chrXII 334460 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.5879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3617,390,0 chrXII 334635 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=169;Dels=0.00;FS=2.992;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.327;QD=23.46;ReadPosRankSum=2.421;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3964,441,0 chrXII 334864 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.70;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3744,402,0 chrXII 335561 . A T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4204,477,0 chrXII 335869 . A G 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.127;QD=15.81;ReadPosRankSum=1.698;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1661,189,0 chrXII 336007 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1052,120,0 chrXII 336315 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2145,234,0 chrXII 336914 . T A 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=85;Dels=0.00;FS=4.058;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.206;QD=21.81;ReadPosRankSum=1.691;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1887,207,0 chrXII 337030 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.458;QD=22.45;ReadPosRankSum=1.699;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2413,270,0 chrXII 337082 . G T 2570 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.07;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2603,285,0 chrXII 338130 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3675,411,0 chrXII 338262 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.09;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3291,360,0 chrXII 338295 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.78;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3472,384,0 chrXII 338529 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.19;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2682,303,0 chrXII 338685 . C T 2118 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.61;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2151,240,0 chrXII 339496 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2198,240,0 chrXII 339668 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=3.00;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:77,9,0 chrXII 340008 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3903,444,0 chrXII 340119 . C T 4895.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.8860;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.85;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4895,540,0 chrXII 340365 . A G 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.8914;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.921;QD=23.29;ReadPosRankSum=1.017;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4239,480,0 chrXII 340527 . A G 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=168;Dels=0.00;FS=9.675;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.584;QD=20.20;ReadPosRankSum=2.922;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3394,399,0 chrXII 340551 . A C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.354;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.800;QD=20.41;ReadPosRankSum=1.712;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3551,423,0 chrXII 340584 . T C 3096 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=20.10;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3129,363,0 chrXII 340602 . A G 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=3.011;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-1.154;QD=18.49;ReadPosRankSum=2.367;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2770,330,0 chrXII 340616 . A G 2863 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.71;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2896,330,0 chrXII 340695 . T C 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.9243;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.655;QD=23.20;ReadPosRankSum=1.688;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5567,624,0 chrXII 340821 . T C 3020 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.12;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3053,348,0 chrXII 340838 . T G 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=3.388;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.890;QD=17.97;ReadPosRankSum=1.660;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:2693,315,0 chrXII 340839 . C A 2833 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.14;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2866,315,0 chrXII 341227 . A G 6207.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=20.6079;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.55;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:6207,699,0 chrXII 341507 . C A 6690.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=21.4097;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.46;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,324:327:99:6690,756,0 chrXII 341678 . G A 5465.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.3756;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.52;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5465,615,0 chrXII 341688 . T A 5060.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.8479;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.57;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5060,567,0 chrXII 341926 . T G 4370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=207;Dels=0.00;FS=11.781;HaplotypeScore=7.8776;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.473;QD=21.11;ReadPosRankSum=2.927;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:4370,507,0 chrXII 341974 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=158;Dels=0.00;FS=3.446;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.872;QD=22.38;ReadPosRankSum=1.688;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3536,396,0 chrXII 342190 . A G 3004 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.86;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3037,354,0 chrXII 342448 . T C 2711 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.04;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2744,303,0 chrXII 342508 . C T 2755 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6744;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.61;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2788,318,0 chrXII 342533 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.8616;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.44;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3260,357,0 chrXII 342709 . C G 2727 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.91;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2760,315,0 chrXII 343120 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2524;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.02;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3060,336,0 chrXII 343213 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.00;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4272,474,0 chrXII 343396 . C T 5611.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.72;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5611,609,0 chrXII 343868 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=14.66;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,93:100:99:1499,171,0 chrXII 343919 . A T 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.492;QD=21.83;ReadPosRankSum=1.696;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2107,237,0 chrXII 344149 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=4.674;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.496;QD=23.22;ReadPosRankSum=1.417;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3098,354,0 chrXII 344280 . T C 2493 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.06;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2526,279,0 chrXII 344336 . A G 3040 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.87;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3073,345,0 chrXII 344703 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=142;Dels=0.00;FS=6.114;HaplotypeScore=10.2342;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.392;QD=20.75;ReadPosRankSum=2.380;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2979,351,0 chrXII 344847 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=201;Dels=0.00;FS=9.153;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.903;QD=22.66;ReadPosRankSum=3.416;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:4,196:201:99:4555,510,0 chrXII 344859 . C T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.06;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4658,507,0 chrXII 345042 . C T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=23.57;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4432,477,0 chrXII 345102 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.8526;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=21.55;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3685,417,0 chrXII 345111 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=22.31;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3569,402,0 chrXII 345153 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=168;Dels=0.00;FS=11.329;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.617;QD=20.80;ReadPosRankSum=2.851;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3494,384,0 chrXII 345204 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=202;Dels=0.00;FS=6.262;HaplotypeScore=12.9962;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.458;QD=21.06;ReadPosRankSum=2.425;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4255,492,0 chrXII 345249 . A G 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=206;Dels=0.00;FS=10.582;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.537;QD=19.85;ReadPosRankSum=2.956;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4090,477,0 chrXII 345286 . T C 3564.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=2.972;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;MQRankSum=-0.321;QD=18.28;ReadPosRankSum=2.336;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3564,399,0 chrXII 345293 . G A 3528.01 SnpCluster AC=2;AF=1.00;AN=2;DP=187;Dels=0.01;FS=0.000;HaplotypeScore=12.4302;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=18.87;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3528,378,0 chrXII 345295 . C T 3592.01 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=19.31;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3592,393,0 chrXII 345387 . G C 3945.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.0979;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=16.65;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3945,444,0 chrXII 345397 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=231;Dels=0.00;FS=2.945;HaplotypeScore=12.5057;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.347;QD=16.55;ReadPosRankSum=2.386;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:3822,426,0 chrXII 345438 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.3990;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.97;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4320,471,0 chrXII 345660 . A G 4516.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.04;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4516,501,0 chrXII 345771 . T C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.681;QD=22.63;ReadPosRankSum=1.698;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4572,516,0 chrXII 346070 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.298;QD=19.98;ReadPosRankSum=1.676;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:3757,432,0 chrXII 346092 . T A 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=191;Dels=0.00;FS=4.002;HaplotypeScore=5.5637;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.644;QD=18.95;ReadPosRankSum=1.714;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3620,414,0 chrXII 346127 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.24;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3501,393,0 chrXII 346167 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8385;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=17.75;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3175,345,0 chrXII 346177 . A G 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=167;Dels=0.00;FS=9.189;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;MQRankSum=-2.078;QD=15.19;ReadPosRankSum=2.922;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:2569,291,0 chrXII 346181 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=15.49;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2558,288,0 chrXII 346204 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;MQRankSum=0.087;QD=12.99;ReadPosRankSum=1.713;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:2359,264,0 chrXII 346211 . A G 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=175;Dels=0.00;FS=12.915;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;MQRankSum=-3.090;QD=13.02;ReadPosRankSum=3.370;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:4,171:175:99:2312,261,0 chrXII 346228 . T A 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;MQRankSum=-1.612;QD=13.90;ReadPosRankSum=1.692;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2437,267,0 chrXII 346231 . T G 2234 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=12.77;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2267,255,0 chrXII 346241 . A C 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=172;Dels=0.00;FS=2.206;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;MQRankSum=0.604;QD=12.58;ReadPosRankSum=2.521;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:2197,249,0 chrXII 346360 . A C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=0.071;QD=19.79;ReadPosRankSum=1.708;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2982,333,0 chrXII 346449 . T G 3933.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.2399;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=22.60;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3933,450,0 chrXII 346533 . C G 2921 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.13;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2954,324,0 chrXII 346554 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.73;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2858,318,0 chrXII 346698 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.41;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4076,441,0 chrXII 346884 . T G 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=3.846;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.710;QD=21.11;ReadPosRankSum=1.667;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3420,393,0 chrXII 347086 . T C 3163 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.59;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3196,363,0 chrXII 347144 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.88;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2679,312,0 chrXII 347145 . C A 2965 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.45;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2998,327,0 chrXII 347194 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5351;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.43;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3858,423,0 chrXII 347320 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=167;Dels=0.00;FS=3.724;HaplotypeScore=14.3496;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.585;QD=21.25;ReadPosRankSum=1.690;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3548,402,0 chrXII 347479 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.30;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3518,396,0 chrXII 347536 . T G 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.185;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7693;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.654;QD=22.01;ReadPosRankSum=-0.873;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2982,351,0 chrXII 347855 . T G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.364;DP=174;Dels=0.00;FS=2.886;HaplotypeScore=7.0743;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.064;QD=22.09;ReadPosRankSum=0.936;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3844,405,0 chrXII 347880 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.37;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4227,456,0 chrXII 347911 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.17;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4479,483,0 chrXII 348259 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=2.668;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.828;QD=20.91;ReadPosRankSum=2.419;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3408,378,0 chrXII 348314 . A C 3282.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.77;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3282,381,0 chrXII 348364 . T C 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=123;Dels=0.00;FS=8.460;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.027;QD=20.53;ReadPosRankSum=2.307;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2558,294,0 chrXII 348561 . T C 1944 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.42;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1977,222,0 chrXII 348625 . C A 1660 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.56;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1693,180,0 chrXII 348627 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.19;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1628,180,0 chrXII 348674 . G C 1104 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.71;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1137,129,0 chrXII 348730 . C T 487 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=14.2474;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=13.91;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:520,57,0 chrXII 348896 . G A 503 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=18.63;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,25:27:57:536,57,0 chrXII 348942 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=15.42;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1097,123,0 chrXII 348950 . T A 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.731;QD=16.78;ReadPosRankSum=2.335;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1476,171,0 chrXII 349138 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.86;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3853,420,0 chrXII 349585 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.13;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3655,417,0 chrXII 349780 . T C 2640 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=17.84;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2673,309,0 chrXII 349782 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.31;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2852,309,0 chrXII 350013 . T C 4593.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.2331;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.87;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4593,534,0 chrXII 350285 . T C 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=207;Dels=0.00;FS=3.019;HaplotypeScore=25.3508;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.150;QD=19.72;ReadPosRankSum=2.426;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:2,203:207:99:4083,456,0 chrXII 350896 . G A 5929.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=16.8782;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.52;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:5929,639,0 chrXII 351004 . A G 5096.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.87;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5096,579,0 chrXII 351043 . C T 5033.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.1367;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.37;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5033,549,0 chrXII 351253 . A G 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.7997;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.691;QD=20.78;ReadPosRankSum=1.701;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4654,525,0 chrXII 351600 . G C 5370.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.0672;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.42;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5370,609,0 chrXII 351829 . T C 4457.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.83;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4457,495,0 chrXII 352224 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=154;Dels=0.00;FS=5.499;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.320;QD=22.67;ReadPosRankSum=2.928;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3491,396,0 chrXII 352942 . C T 1811 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.06;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1844,198,0 chrXII 352956 . C A 1981 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.42;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2014,219,0 chrXII 353044 . G A 2164 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.59;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2197,240,0 chrXII 353046 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.67;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2348,255,0 chrXII 353555 . G T 2699 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.77;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2732,297,0 chrXII 354015 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2934,330,0 chrXII 354211 . T A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.31;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3743,411,0 chrXII 354522 . G T 2833 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2866,318,0 chrXII 354898 . T C 2757 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2790,324,0 chrXII 355000 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.46;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3106,336,0 chrXII 355221 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2855,312,0 chrXII 355419 . A G 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=128;Dels=0.00;FS=6.085;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.500;QD=20.76;ReadPosRankSum=2.913;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2690,303,0 chrXII 355552 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.802;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.540;QD=22.14;ReadPosRankSum=1.604;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2424,279,0 chrXII 355771 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.44;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1985,222,0 chrXII 355823 . T C 2146 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.2017;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.08;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2179,246,0 chrXII 355883 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.04;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:3236,366,0 chrXII 356480 . A C 2612 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2645,312,0 chrXII 356519 . A T 2629 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2662,288,0 chrXII 356868 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.17;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3867,423,0 chrXII 357438 . G T 3662.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.09;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3662,396,0 chrXII 357529 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.48;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2956,318,0 chrXII 357535 . A G 2824 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.96;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2857,312,0 chrXII 357577 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.85;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2935,315,0 chrXII 357639 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.33;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2655,291,0 chrXII 357640 . A G 2513 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.33;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2546,288,0 chrXII 357723 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.70;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2615,291,0 chrXII 357940 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9375;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.16;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3310,390,0 chrXII 358026 . G A 4828.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4828,520,0 chrXII 358302 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.161;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=14.3752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.932;QD=21.09;ReadPosRankSum=2.421;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3606,411,0 chrXII 358692 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.23;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4091,450,0 chrXII 359308 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=14.6981;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.05;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2638,288,0 chrXII 360157 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.26;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3857,420,0 chrXII 360187 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1831;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.110;QD=23.28;ReadPosRankSum=1.670;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3911,432,0 chrXII 360433 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=6.945;HaplotypeScore=10.9923;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-2.240;QD=22.99;ReadPosRankSum=2.300;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3816,432,0 chrXII 360772 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.37;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4558,519,0 chrXII 360970 . G A 4741.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.69;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4741,513,0 chrXII 361284 . T C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.120;DP=130;Dels=0.00;FS=15.566;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.411;QD=22.62;ReadPosRankSum=4.120;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:6,122:130:99:2974,336,0 chrXII 361599 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.41;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2655,291,0 chrXII 361865 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=130;Dels=0.00;FS=9.211;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.935;QD=22.03;ReadPosRankSum=3.391;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:4,126:130:99:2897,342,0 chrXII 362782 . G A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8912;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.28;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3739,408,0 chrXII 362841 . G T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.6862;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.54;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3256,366,0 chrXII 363007 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.64;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2427,276,0 chrXII 363562 . A T 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=4.283;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.687;QD=23.44;ReadPosRankSum=1.595;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2986,327,0 chrXII 363604 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.98;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3043,345,0 chrXII 363670 . A G 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.771;QD=22.94;ReadPosRankSum=1.674;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2763,303,0 chrXII 363704 . A G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.101;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.818;QD=21.44;ReadPosRankSum=2.406;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2456,279,0 chrXII 363805 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.220;QD=21.93;ReadPosRankSum=1.701;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2489,285,0 chrXII 363912 . T C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.312;QD=24.10;ReadPosRankSum=1.697;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2467,276,0 chrXII 364089 . G T 2150 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2183,246,0 chrXII 364277 . C A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3386,384,0 chrXII 364406 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.193;QD=21.51;ReadPosRankSum=1.706;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2937,333,0 chrXII 364505 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3579,405,0 chrXII 364537 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3749,441,0 chrXII 364596 . T A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.69;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4296,462,0 chrXII 365048 . T G 2726 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.34;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2759,315,0 chrXII 365170 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.50;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2801,306,0 chrXII 365270 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1964,216,0 chrXII 365572 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9740;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.56;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3049,333,0 chrXII 365682 . A T 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=6.994;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-0.756;QD=19.60;ReadPosRankSum=2.405;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2189,249,0 chrXII 365684 . A G 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=3.432;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-0.096;QD=19.75;ReadPosRankSum=1.668;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2206,246,0 chrXII 365722 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=17.44;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2161,240,0 chrXII 365733 . T A 2145 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=18.33;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2178,231,0 chrXII 365737 . C G 1828 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=16.32;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1861,216,0 chrXII 365746 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=16.31;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1778,201,0 chrXII 365822 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.82;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1699,186,0 chrXII 365894 . T A 1455 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=22.38;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1488,162,0 chrXII 365923 . C A 1963 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=22.56;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1996,219,0 chrXII 366017 . A G 384.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;DP=32;Dels=0.00;FS=1.841;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=33.40;MQ0=0;MQRankSum=-0.922;QD=12.00;ReadPosRankSum=-0.545;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:9,23:32:99:414,0,127 chrXII 366021 . C G 80.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DP=28;Dels=0.00;FS=4.301;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=32.50;MQ0=0;MQRankSum=0.076;QD=2.86;ReadPosRankSum=0.483;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:20,8:28:99:110,0,363 chrXII 366029 . A T 73.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=1;MLEAF=0.500;MQ=32.33;MQ0=0;MQRankSum=-2.117;QD=4.56;ReadPosRankSum=1.059;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:7,9:16:99:103,0,102 chrXII 366030 . T C 75.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=1;MLEAF=0.500;MQ=29.61;MQ0=0;MQRankSum=-1.092;QD=5.36;ReadPosRankSum=0.817;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:5,8:14:99:105,0,102 chrXII 366044 . T A 87.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=9.031;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=0.747;QD=10.97;ReadPosRankSum=-0.747;SB=-3.670e+00 GT:AD:DP:GQ:PL 0/1:1,7:8:4:117,0,4 chrXII 366046 . T C 101.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=0.742;QD=14.47;ReadPosRankSum=-0.742;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:15:134,15,0 chrXII 366198 . C T 1133 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=15.52;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1166,126,0 chrXII 366226 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=22.32;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1640,177,0 chrXII 366229 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=21.96;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1658,177,0 chrXII 366239 . G C 1883 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=19.82;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1916,213,0 chrXII 366378 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=23.54;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3837,435,0 chrXII 366417 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.912;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.429;QD=23.51;ReadPosRankSum=1.645;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3762,426,0 chrXII 366649 . G T 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;DP=124;Dels=0.00;FS=3.082;HaplotypeScore=13.0789;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.085;QD=22.69;ReadPosRankSum=0.369;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2846,306,0 chrXII 366700 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.7468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3783,417,0 chrXII 366845 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.2149;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.65;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3427,366,0 chrXII 366982 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.98;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3022,327,0 chrXII 367056 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.89;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3410,366,0 chrXII 367241 . T G 3405.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.48;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3405,378,0 chrXII 367293 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.76;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2927,318,0 chrXII 367326 . T C 3014 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.33;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3047,336,0 chrXII 367348 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.48;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3440,378,0 chrXII 367402 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=142;Dels=0.00;FS=2.602;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.684;QD=18.92;ReadPosRankSum=2.363;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2720,318,0 chrXII 367545 . T C 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=3.127;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.138;QD=18.93;ReadPosRankSum=1.640;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2191,249,0 chrXII 367546 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.90;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2262,246,0 chrXII 367570 . A T 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=114;Dels=0.00;FS=6.100;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.283;QD=19.55;ReadPosRankSum=2.885;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2262,246,0 chrXII 367673 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.637;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.439;QD=22.62;ReadPosRankSum=1.655;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3064,348,0 chrXII 367825 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.10;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3494,387,0 chrXII 367857 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.098;QD=22.07;ReadPosRankSum=1.710;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3509,396,0 chrXII 367998 . T A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.01;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3817,414,0 chrXII 368038 . C A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.90;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3366,375,0 chrXII 368453 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=144;Dels=0.00;FS=7.794;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.674;QD=23.14;ReadPosRankSum=2.415;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3332,375,0 chrXII 368695 . T A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.61;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3714,405,0 chrXII 368748 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.06;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3759,414,0 chrXII 368770 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.82;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3579,399,0 chrXII 368990 . C T 6823.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.94;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6823,741,0 chrXII 369062 . G A 8440.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=40.1083;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.58;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,354:358:99:8440,930,0 chrXII 369632 . A G 126.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.77;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:159,18,0 chrXII 369646 . C T 164.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.23;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:197,21,0 chrXII 369919 . G A 6482.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.28;SB=-3.359e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6482,708,0 chrXII 370090 . A G 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.170;DP=247;Dels=0.00;FS=2.374;HaplotypeScore=23.2330;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.357;QD=21.04;ReadPosRankSum=3.404;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:4,242:247:99:5197,597,0 chrXII 370580 . C A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.25;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3325,360,0 chrXII 370600 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.48;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3062,336,0 chrXII 370629 . C G 2749 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.07;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2782,321,0 chrXII 370768 . C T 5134.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=20.7011;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.30;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5134,558,0 chrXII 370966 . C T 5095.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.5138;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.85;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5095,558,0 chrXII 371874 . T A 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;DP=146;Dels=0.00;FS=3.383;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.495;QD=23.79;ReadPosRankSum=-1.708;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3474,366,0 chrXII 372013 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.11;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3859,447,0 chrXII 372265 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=172;Dels=0.00;FS=12.729;HaplotypeScore=8.9698;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.453;QD=19.90;ReadPosRankSum=2.900;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3423,387,0 chrXII 372291 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.840;DP=172;Dels=0.00;FS=2.767;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.682;QD=19.28;ReadPosRankSum=0.668;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3317,336,0 chrXII 372303 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=17.69;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3343,384,0 chrXII 372524 . C T 6180.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=9.7634;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.41;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6180,681,0 chrXII 372738 . A G 7311.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=374;Dels=0.00;FS=8.681;HaplotypeScore=20.7951;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.326;QD=19.55;ReadPosRankSum=3.340;SB=-3.906e+03 GT:AD:DP:GQ:PL 1/1:4,368:374:99:7311,872,0 chrXII 373070 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=12.42;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1374,147,0 chrXII 373094 . T C 980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;MQRankSum=-1.471;QD=9.25;ReadPosRankSum=0.948;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1013,114,0 chrXII 373100 . G T 1065 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=10.44;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1098,120,0 chrXII 373138 . A C 1000 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=12.50;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1033,117,0 chrXII 373147 . C T 958 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=13.49;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:991,105,0 chrXII 373233 . A T 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=-1.691;QD=20.74;ReadPosRankSum=1.691;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1775,201,0 chrXII 373260 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=21.59;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2343,264,0 chrXII 373385 . T C 1864 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=24.21;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1897,219,0 chrXII 373432 . T C 1193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;MQRankSum=1.165;QD=21.30;ReadPosRankSum=1.669;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1226,135,0 chrXII 373442 . G C 1077 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=18.89;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1110,126,0 chrXII 373453 . C G 853 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=39.1872;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=16.73;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:886,96,0 chrXII 373488 . T C 1296 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=17.28;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1329,147,0 chrXII 373508 . A G 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=84;Dels=0.01;FS=2.836;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;MQRankSum=-0.193;QD=15.00;ReadPosRankSum=2.391;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1293,147,0 chrXII 373516 . T C 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.979;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;MQRankSum=-1.243;QD=16.78;ReadPosRankSum=1.651;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1459,162,0 chrXII 373567 . C G 2001 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.84;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2034,228,0 chrXII 373579 . T G 2126 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.62;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2159,237,0 chrXII 373640 . T A 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=0.067;QD=15.01;ReadPosRankSum=1.687;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1204,129,0 chrXII 373651 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=12.42;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:977,111,0 chrXII 373658 . T C 895 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=110.2935;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=12.26;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:928,105,0 chrXII 373666 . T C 164.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.980;DP=95;Dels=0.00;FS=2.003;HaplotypeScore=116.5838;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;MQRankSum=-0.134;QD=1.73;ReadPosRankSum=-7.392;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:58,37:95:24:197,24,0 chrXII 373806 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=23.32;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2715,312,0 chrXII 373838 . C G 2930 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=24.62;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2963,327,0 chrXII 373988 . A C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=81;Dels=0.00;FS=5.230;HaplotypeScore=14.0283;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;MQRankSum=-2.823;QD=22.09;ReadPosRankSum=3.281;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1822,204,0 chrXII 374334 . A C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=4.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrXII 374445 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;MQRankSum=0.917;QD=21.06;ReadPosRankSum=1.681;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2897,324,0 chrXII 374666 . G A 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.091;QD=23.60;ReadPosRankSum=-0.638;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1378,130,0 chrXII 374847 . T C 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=1.363;QD=19.97;ReadPosRankSum=1.594;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1531,171,0 chrXII 374858 . T C 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=85;Dels=0.00;FS=2.415;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=0.550;QD=21.11;ReadPosRankSum=3.352;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:4,81:85:99:1827,201,0 chrXII 374891 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.03;FS=0.000;HaplotypeScore=7.1730;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=18.25;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1730,192,0 chrXII 374933 . T A 2404 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=24.04;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2437,267,0 chrXII 374962 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.30;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2376,264,0 chrXII 374970 . A T 2192 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.68;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2225,249,0 chrXII 375009 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=1.001;QD=17.81;ReadPosRankSum=1.705;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2330,270,0 chrXII 375089 . G C 3201 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=21.48;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3234,395,0 chrXII 375099 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=2.745;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=33.47;MQ0=0;MQRankSum=-0.561;QD=20.25;ReadPosRankSum=2.357;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3281,413,0 chrXII 375126 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;MQRankSum=-0.982;QD=20.28;ReadPosRankSum=1.688;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3217,401,0 chrXII 375130 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=159;Dels=0.00;FS=6.015;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;MQRankSum=-0.867;QD=18.98;ReadPosRankSum=2.880;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3051,383,0 chrXII 375154 . A G 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=202;Dels=0.00;FS=3.768;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;MQRankSum=-1.628;QD=20.78;ReadPosRankSum=1.715;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4197,471,0 chrXII 375271 . A G 5407.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=17.50;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:5407,638,0 chrXII 375290 . C T 2793 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=14.70;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2826,321,0 chrXII 375294 . T C 1967 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=11.71;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2000,243,0 chrXII 375295 . T G 1815 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;QD=11.20;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:1848,225,0 chrXII 375302 . C T 1390 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=19.4864;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;MQRankSum=-0.628;QD=10.07;ReadPosRankSum=-1.732;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1423,165,0 chrXII 375325 . A G 208.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.438;DP=207;Dels=0.00;FS=6.202;HaplotypeScore=121.4635;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=0;MQRankSum=-0.001;QD=1.00;ReadPosRankSum=9.484;SB=-2.920e+02 GT:AD:DP:GQ:PL 0/1:69,128:207:67:238,0,67 chrXII 375329 . C T 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.804;DP=257;Dels=0.00;FS=2.002;HaplotypeScore=137.1370;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=0;MQRankSum=1.137;QD=0.60;ReadPosRankSum=-6.169;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:185,72:257:99:183,0,699 chrXII 375331 . C G 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.523;DP=269;Dels=0.00;FS=43.031;HaplotypeScore=96.5436;MLEAC=1;MLEAF=0.500;MQ=27.96;MQ0=0;MQRankSum=-0.551;QD=0.20;ReadPosRankSum=-4.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:237,32:269:85:85,0,808 chrXII 375335 . C T 208.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.572;DP=300;Dels=0.00;FS=69.846;HaplotypeScore=112.9681;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=0;MQRankSum=0.942;QD=0.69;ReadPosRankSum=-5.637;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:251,49:300:99:238,0,831 chrXII 375353 . T C 708.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.502;DP=409;Dels=0.00;FS=135.309;HaplotypeScore=111.4656;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=1.216;QD=1.73;ReadPosRankSum=-8.382;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:296,113:409:99:738,0,906 chrXII 375370 . G A 1283.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.828;DP=457;Dels=0.00;FS=129.786;HaplotypeScore=227.2898;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=3.434;QD=2.81;ReadPosRankSum=-1.960;SB=-1.513e+03 GT:AD:DP:GQ:PL 0/1:257,199:457:99:1313,0,660 chrXII 375373 . A C 670.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.090;DP=457;Dels=0.00;FS=132.234;HaplotypeScore=251.2315;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=-0.304;QD=1.47;ReadPosRankSum=0.318;SB=-8.270e+02 GT:AD:DP:GQ:PL 0/1:199,258:457:99:700,0,1331 chrXII 375377 . C T 892.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.023;DP=453;Dels=0.04;FS=127.686;HaplotypeScore=201.4165;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=1.822;QD=1.97;ReadPosRankSum=1.366;SB=-1.612e+03 GT:AD:DP:GQ:PL 0/1:239,196:435:99:922,0,762 chrXII 375379 . A C,G 1465.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.937;DP=451;Dels=0.00;FS=17.035;HaplotypeScore=43.0960;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.12;MQ0=0;MQRankSum=0.273;QD=3.25;ReadPosRankSum=4.745;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/2:28,184,237:451:99:1525,814,733,690,0,597 chrXII 375380 . C T 1731 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.074;DP=450;Dels=0.00;FS=2.092;HaplotypeScore=166.6477;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=-0.206;QD=3.85;ReadPosRankSum=3.714;SB=-3.845e+03 GT:AD:DP:GQ:PL 1/1:18,421:450:99:1764,213,0 chrXII 375384 . C T 1008.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;DP=454;Dels=0.00;FS=132.486;HaplotypeScore=187.8399;MLEAC=1;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=3.385;QD=2.22;ReadPosRankSum=4.667;SB=-1.469e+03 GT:AD:DP:GQ:PL 0/1:254,200:454:99:1038,0,679 chrXII 375385 . A G 616.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.171;DP=451;Dels=0.00;FS=118.005;HaplotypeScore=187.8399;MLEAC=1;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=0.707;QD=1.37;ReadPosRankSum=-2.842;SB=-7.060e+02 GT:AD:DP:GQ:PL 0/1:218,233:451:99:646,0,1166 chrXII 375386 . T C 1193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.944;DP=462;Dels=0.00;FS=144.507;HaplotypeScore=172.0201;MLEAC=1;MLEAF=0.500;MQ=29.43;MQ0=0;MQRankSum=1.816;QD=2.58;ReadPosRankSum=4.178;SB=-1.487e+03 GT:AD:DP:GQ:PL 0/1:252,210:462:99:1223,0,676 chrXII 375388 . A G 1470.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.607;DP=471;Dels=0.00;FS=159.602;HaplotypeScore=145.0094;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=0;MQRankSum=4.728;QD=3.12;ReadPosRankSum=3.716;SB=-1.336e+03 GT:AD:DP:GQ:PL 0/1:250,221:471:99:1500,0,658 chrXII 375391 . A G 509.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.958;DP=542;Dels=0.00;FS=168.382;HaplotypeScore=87.6883;MLEAC=1;MLEAF=0.500;MQ=30.92;MQ0=0;MQRankSum=-2.565;QD=0.94;ReadPosRankSum=4.203;SB=-3.680e+02 GT:AD:DP:GQ:PL 0/1:337,205:542:99:539,0,1812 chrXII 375397 . C G 458.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.551;DP=551;Dels=0.00;FS=171.859;HaplotypeScore=74.5812;MLEAC=1;MLEAF=0.500;MQ=33.52;MQ0=0;MQRankSum=-3.706;QD=0.83;ReadPosRankSum=1.943;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:370,179:551:99:488,0,2196 chrXII 375401 . G C 472.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DP=522;Dels=0.00;FS=142.196;HaplotypeScore=152.4758;MLEAC=1;MLEAF=0.500;MQ=35.01;MQ0=0;MQRankSum=-4.032;QD=0.90;ReadPosRankSum=3.107;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:382,139:522:99:502,0,2453 chrXII 375402 . A C 424.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.681;DP=525;Dels=0.00;FS=157.123;HaplotypeScore=263.2666;MLEAC=1;MLEAF=0.500;MQ=35.28;MQ0=0;MQRankSum=-2.457;QD=0.81;ReadPosRankSum=2.088;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:367,139:525:99:454,0,2768 chrXII 375556 . T C 5333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=294;Dels=0.00;FS=5.448;HaplotypeScore=18.4369;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;MQRankSum=-1.054;QD=18.14;ReadPosRankSum=1.696;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,290:294:99:5333,624,0 chrXII 375574 . T G 4640.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=18.71;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,243:248:99:4640,531,0 chrXII 375697 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.31;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3857,429,0 chrXII 375724 . C T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.34;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3709,402,0 chrXII 375784 . A G 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.066;QD=20.75;ReadPosRankSum=1.706;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2751,309,0 chrXII 375813 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.79;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2791,306,0 chrXII 375847 . C A 2607 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2640,294,0 chrXII 375973 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.91;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3103,336,0 chrXII 376012 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.60;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3265,360,0 chrXII 376200 . A G 4136.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.62;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4136,456,0 chrXII 376303 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.44;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3602,405,0 chrXII 376495 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.12;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3062,342,0 chrXII 376585 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.42;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3325,363,0 chrXII 376900 . A G 5480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=247;Dels=0.00;FS=9.117;HaplotypeScore=13.3767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.887;QD=22.19;ReadPosRankSum=3.411;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:4,243:247:99:5480,636,0 chrXII 376969 . G A 5378.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=12.5593;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.86;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5378,603,0 chrXII 377252 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.10;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4597,510,0 chrXII 377332 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.142;DP=205;Dels=0.00;FS=9.109;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.400;QD=19.80;ReadPosRankSum=3.348;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:4,199:205:99:4060,468,0 chrXII 377349 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.92;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3585,411,0 chrXII 377512 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.33;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3578,390,0 chrXII 377522 . G T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.3277;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.04;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3656,417,0 chrXII 377594 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=3.568;HaplotypeScore=6.2669;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.807;QD=21.30;ReadPosRankSum=1.714;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4068,453,0 chrXII 377691 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=7.3302;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.27;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3467,402,0 chrXII 377739 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=149;Dels=0.00;FS=2.776;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-1.691;QD=20.46;ReadPosRankSum=2.268;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3081,354,0 chrXII 377913 . C G 4034.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.45;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4034,447,0 chrXII 377948 . T A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.94;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3691,402,0 chrXII 378020 . A C 2996 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.05;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3029,348,0 chrXII 378126 . G A 4789.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.07;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4789,519,0 chrXII 378215 . T C 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=201;Dels=0.00;FS=2.989;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.173;QD=18.47;ReadPosRankSum=2.425;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:3712,432,0 chrXII 378221 . G C 4114.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.0290;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.59;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4114,456,0 chrXII 378260 . T C 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=255;Dels=0.00;FS=2.936;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.275;QD=20.62;ReadPosRankSum=2.392;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5257,603,0 chrXII 378380 . A T 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=231;Dels=0.00;FS=4.046;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.162;QD=23.16;ReadPosRankSum=1.627;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5351,585,0 chrXII 378437 . A G 5786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=247;Dels=0.00;FS=6.043;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.506;QD=23.43;ReadPosRankSum=2.972;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:3,243:247:99:5786,663,0 chrXII 378644 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=179;Dels=0.00;FS=13.668;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.509;QD=21.37;ReadPosRankSum=2.949;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3825,426,0 chrXII 378845 . A G 3145 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3178,351,0 chrXII 379144 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=135;Dels=0.00;FS=3.041;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.823;QD=21.79;ReadPosRankSum=2.413;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2974,330,0 chrXII 379244 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3559,384,0 chrXII 379334 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.6942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4209,474,0 chrXII 379448 . T A 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=4.559;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.169;QD=22.72;ReadPosRankSum=1.710;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3681,408,0 chrXII 379575 . G C 2983 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.8933;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.10;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3016,336,0 chrXII 379794 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=124;Dels=0.00;FS=3.011;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.310;QD=21.73;ReadPosRankSum=2.370;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2727,303,0 chrXII 379856 . A T 2168 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.12;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2201,240,0 chrXII 379874 . T G 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=96;Dels=0.00;FS=8.029;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-2.191;QD=18.84;ReadPosRankSum=2.372;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1842,210,0 chrXII 380429 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.62;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3841,417,0 chrXII 380510 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.19;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3184,348,0 chrXII 380578 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=131;Dels=0.00;FS=7.225;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.240;QD=21.59;ReadPosRankSum=2.354;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,126:131:99:2861,336,0 chrXII 380902 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.169;DP=139;Dels=0.00;FS=4.886;HaplotypeScore=17.5580;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.460;QD=23.02;ReadPosRankSum=3.395;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:3233,357,0 chrXII 380969 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.99;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3399,372,0 chrXII 381256 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.5967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.876;QD=22.56;ReadPosRankSum=1.690;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3767,432,0 chrXII 381370 . G C 3762.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3762,423,0 chrXII 381601 . G A 4698.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.47;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4698,516,0 chrXII 381823 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.653;DP=179;Dels=0.00;FS=12.018;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.924;QD=21.70;ReadPosRankSum=3.768;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:5,173:179:99:3884,447,0 chrXII 381898 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.34;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4067,444,0 chrXII 381902 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=201;Dels=0.00;FS=5.776;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.076;QD=19.16;ReadPosRankSum=2.894;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:3,196:201:99:3852,435,0 chrXII 381913 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=209;Dels=0.00;FS=6.692;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.029;QD=19.33;ReadPosRankSum=2.426;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4041,453,0 chrXII 382029 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.19;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3573,393,0 chrXII 382340 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.86;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2944,321,0 chrXII 382560 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=3.457;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.498;QD=22.15;ReadPosRankSum=1.628;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3001,354,0 chrXII 382702 . T C 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=129;Dels=0.00;FS=11.785;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.024;QD=20.53;ReadPosRankSum=2.945;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:3,124:129:99:2682,300,0 chrXII 382931 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1769,195,0 chrXII 383137 . A G 2198 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.9509;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.34;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2231,249,0 chrXII 383393 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.79;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3041,333,0 chrXII 383428 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.410;QD=21.90;ReadPosRankSum=2.377;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2989,333,0 chrXII 383587 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.26;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2237,243,0 chrXII 383611 . C G 2170 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.07;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2203,243,0 chrXII 383695 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.97;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3427,387,0 chrXII 383727 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.8380;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.27;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3198,351,0 chrXII 383785 . A G 2893 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.59;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2926,342,0 chrXII 383932 . T C 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=187;Dels=0.00;FS=2.998;HaplotypeScore=13.4742;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.084;QD=21.81;ReadPosRankSum=2.410;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4078,471,0 chrXII 384409 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.713;QD=19.58;ReadPosRankSum=1.714;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3700,414,0 chrXII 384412 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.02;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3723,402,0 chrXII 384475 . C T 2950 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.80;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2983,318,0 chrXII 384565 . G C 3972.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.50;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3972,438,0 chrXII 384729 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.63;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3568,402,0 chrXII 384821 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=138;Dels=0.00;FS=4.491;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.552;QD=24.33;ReadPosRankSum=1.706;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:3357,372,0 chrXII 385142 . A G 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.222;QD=21.12;ReadPosRankSum=1.705;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2757,312,0 chrXII 385601 . G T 2801 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.60;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2834,321,0 chrXII 385802 . G A 3145 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.57;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3178,348,0 chrXII 385887 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=22.42;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2724,291,0 chrXII 385902 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=-0.620;QD=19.40;ReadPosRankSum=1.706;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2633,300,0 chrXII 385909 . T C 2732 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=19.94;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2765,309,0 chrXII 385938 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=20.79;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3347,366,0 chrXII 385960 . A G 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-1.054;QD=18.15;ReadPosRankSum=1.708;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2647,294,0 chrXII 385961 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=3.005;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=0.370;QD=17.97;ReadPosRankSum=2.415;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2603,294,0 chrXII 386104 . A G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.304;QD=21.32;ReadPosRankSum=1.625;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2122,246,0 chrXII 386133 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=23.61;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3008,327,0 chrXII 386266 . A G 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.091;QD=21.78;ReadPosRankSum=2.377;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1514,165,0 chrXII 386311 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=50.1035;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.836;QD=25.09;ReadPosRankSum=1.673;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1488,165,0 chrXII 386351 . G A 1598 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=24.21;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1631,174,0 chrXII 386700 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.9456;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.40;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4100,465,0 chrXII 387140 . A G 5224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=241;Dels=0.00;FS=5.559;HaplotypeScore=16.3846;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=2.079;QD=21.68;ReadPosRankSum=2.904;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5224,576,0 chrXII 387156 . C A 5601.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.49;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5601,618,0 chrXII 387519 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=20.0659;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.31;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3948,435,0 chrXII 387760 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.00;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3960,435,0 chrXII 387927 . G C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.42;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3536,411,0 chrXII 388010 . A C 2902 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.88;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2935,342,0 chrXII 388456 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.8985;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.86;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4342,486,0 chrXII 388801 . A G 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=5.416;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.493;QD=23.75;ReadPosRankSum=1.692;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4156,486,0 chrXII 388930 . G A 4997.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.40;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4997,564,0 chrXII 388950 . C T 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.3843;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.702;QD=21.57;ReadPosRankSum=-0.090;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5005,552,0 chrXII 389347 . C T 6712.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=33.8586;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.59;SB=-3.854e+03 GT:AD:DP:GQ:PL 1/1:0,322:326:99:6712,756,0 chrXII 389413 . T A 8537.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=385;Dels=0.00;FS=6.008;HaplotypeScore=28.4412;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.516;QD=22.17;ReadPosRankSum=2.914;SB=-4.531e+03 GT:AD:DP:GQ:PL 1/1:3,382:385:99:8537,934,0 chrXII 389584 . G A 7713.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.81;SB=-3.559e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:7713,844,0 chrXII 389815 . A G 5525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.074;DP=279;Dels=0.00;FS=18.395;HaplotypeScore=17.6732;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.427;QD=19.80;ReadPosRankSum=4.171;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:6,273:279:99:5525,659,0 chrXII 389841 . A G 5086.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=267;Dels=0.00;FS=3.402;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-1.187;QD=19.05;ReadPosRankSum=1.719;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:5086,561,0 chrXII 389845 . A G 4987.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=279;Dels=0.00;FS=3.452;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.416;QD=17.87;ReadPosRankSum=1.682;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:4987,570,0 chrXII 389851 . A G 4954.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.405;DP=280;Dels=0.00;FS=12.649;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-1.488;QD=17.69;ReadPosRankSum=3.405;SB=-3.403e+03 GT:AD:DP:GQ:PL 1/1:4,275:280:99:4954,561,0 chrXII 389953 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=238;Dels=0.00;FS=2.779;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.175;QD=19.11;ReadPosRankSum=2.376;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,233:238:99:4549,528,0 chrXII 390142 . T C 1977 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.14;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2010,225,0 chrXII 390321 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.87;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:93:809,93,0 chrXII 390659 . C A 2114 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=16.7085;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.39;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2147,237,0 chrXII 390693 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.99;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2652,297,0 chrXII 390724 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=17.00;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2566,279,0 chrXII 390856 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.593;QD=23.64;ReadPosRankSum=2.422;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4161,477,0 chrXII 390963 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.2960;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=16.55;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2284,249,0 chrXII 391007 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0291;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.18;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:2997,345,0 chrXII 391126 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.59;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3269,378,0 chrXII 391142 . C A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.01;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3543,384,0 chrXII 391214 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.4950;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.99;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2791,324,0 chrXII 391232 . A T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.10;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3603,387,0 chrXII 391272 . T A 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.360;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.8971;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.266;QD=21.37;ReadPosRankSum=-1.006;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3974,414,0 chrXII 391324 . C T 4699.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.3734;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.15;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4699,516,0 chrXII 391451 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=180;Dels=0.00;FS=3.338;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;MQRankSum=1.422;QD=21.94;ReadPosRankSum=1.674;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3949,416,0 chrXII 391460 . T G 3942.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=22.02;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3942,453,0 chrXII 391658 . G T 1530 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=16.45;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1563,183,0 chrXII 391659 . G A 1564 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=17.19;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1597,183,0 chrXII 391660 . A G 1558 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;MQRankSum=-1.615;QD=17.51;ReadPosRankSum=1.576;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1591,183,0 chrXII 391666 . G A 1845 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=19.22;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1878,210,0 chrXII 391669 . G C 1691 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=18.79;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1724,192,0 chrXII 391670 . C T 1694 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=18.82;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1727,195,0 chrXII 391675 . T C 1883 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=100;Dels=0.00;FS=27.523;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;MQRankSum=-1.031;QD=18.83;ReadPosRankSum=2.869;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:1916,216,0 chrXII 391818 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=13.79;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1701,192,0 chrXII 391823 . G T 1458 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=12.36;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1491,168,0 chrXII 391861 . C G 367 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=3.86;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:51:400,51,0 chrXII 391873 . C G 514 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=5.09;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:69:547,69,0 chrXII 391886 . T C 671 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=6.05;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:84:704,84,0 chrXII 391911 . T C 1112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=142;Dels=0.00;FS=2.507;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;MQRankSum=-2.624;QD=7.83;ReadPosRankSum=2.951;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:1145,126,0 chrXII 391930 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;QD=9.00;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1419,156,0 chrXII 391951 . T A 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;MQRankSum=-1.261;QD=9.78;ReadPosRankSum=1.712;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:1686,186,0 chrXII 391960 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=10.17;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:1751,195,0 chrXII 391981 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=13.33;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:2513,288,0 chrXII 392010 . C T 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;MQRankSum=-1.384;QD=13.98;ReadPosRankSum=1.616;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:2535,291,0 chrXII 392012 . T C 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=-1.199;QD=13.42;ReadPosRankSum=1.713;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:2489,291,0 chrXII 392046 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.2908;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=20.67;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4010,441,0 chrXII 392081 . A T 4767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;MQRankSum=1.105;QD=22.70;ReadPosRankSum=1.716;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4767,519,0 chrXII 392173 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.6368;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=24.20;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4332,480,0 chrXII 392292 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.41;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3384,381,0 chrXII 392407 . C A 1883 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=21.40;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1916,213,0 chrXII 392412 . T A 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=5.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;MQRankSum=-0.645;QD=20.09;ReadPosRankSum=1.531;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1761,192,0 chrXII 392424 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=-1.684;QD=19.10;ReadPosRankSum=1.684;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1408,159,0 chrXII 392459 . C A 1058 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=42.0640;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=19.59;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1091,120,0 chrXII 392469 . A G 833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.90;MQ0=0;MQRankSum=-1.944;QD=16.33;ReadPosRankSum=3.276;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:4,47:51:96:866,96,0 chrXII 392474 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=18.50;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:995,108,0 chrXII 392482 . C T 951 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=17.29;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:984,105,0 chrXII 392549 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=23.54;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1657,186,0 chrXII 392576 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=21.25;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1308,147,0 chrXII 392605 . G A 760 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=17.67;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:793,93,0 chrXII 392619 . A G 677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=-0.933;QD=17.36;ReadPosRankSum=1.466;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:84:710,84,0 chrXII 392636 . A T 326 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=11.24;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:359,42,0 chrXII 392641 . T C 328 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=33;Dels=0.00;FS=2.663;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;MQRankSum=0.189;QD=9.94;ReadPosRankSum=2.301;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:42:361,42,0 chrXII 392644 . G A 384 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=12.00;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:48:417,48,0 chrXII 392647 . G A 438 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=13.69;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:471,54,0 chrXII 392664 . A G 293 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=10.46;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:36:326,36,0 chrXII 392676 . C T 315 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=9.00;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:348,39,0 chrXII 392735 . T C 1016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;MQRankSum=-1.549;QD=12.24;ReadPosRankSum=2.916;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1049,123,0 chrXII 392790 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=12.59;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:977,108,0 chrXII 392829 . A T 1391 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=16.96;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1424,159,0 chrXII 392866 . G T 2087 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=20.66;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2120,231,0 chrXII 393030 . C A 5352.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=24.89;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5352,585,0 chrXII 393172 . T G 3402.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=19.33;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3402,393,0 chrXII 393179 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=189;Dels=0.00;FS=3.006;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-0.825;QD=19.03;ReadPosRankSum=2.411;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3597,402,0 chrXII 393184 . G C 3796.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=18.70;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3796,423,0 chrXII 393232 . C G 4182.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=16.66;SB=-3.087e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:4182,471,0 chrXII 393248 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=16.47;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:3838,420,0 chrXII 393266 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=15.17;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:3458,396,0 chrXII 393269 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=223;Dels=0.00;FS=5.789;HaplotypeScore=5.3932;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=-0.711;QD=15.20;ReadPosRankSum=2.968;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:3,216:223:99:3390,390,0 chrXII 393432 . G A 4680.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.8985;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=22.61;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4680,507,0 chrXII 393632 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.49;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4276,480,0 chrXII 394006 . T A 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=9.5170;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;MQRankSum=-1.369;QD=14.12;ReadPosRankSum=1.977;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1078,120,0 chrXII 394020 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=19.14;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1124,123,0 chrXII 394085 . G A 841 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=42.6573;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=15.87;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:96:874,96,0 chrXII 394098 . A T 743 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=97.8652;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=13.27;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:776,84,0 chrXII 394150 . C A 1595 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=19.45;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1628,192,0 chrXII 394174 . A G 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;MQRankSum=-1.745;QD=18.74;ReadPosRankSum=2.386;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1476,174,0 chrXII 394197 . T C 912 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;QD=18.61;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:945,120,0 chrXII 394198 . C G 976 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=21.69;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1009,123,0 chrXII 394201 . G A 931 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;MQRankSum=0.236;QD=21.16;ReadPosRankSum=0.709;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:964,114,0 chrXII 394224 . T C 286 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=15.05;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:319,39,0 chrXII 394225 . A G 285 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=15.00;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:318,36,0 chrXII 394244 . A C 546 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=22.6627;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;QD=14.76;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:69:579,69,0 chrXII 394281 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=21.63;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2088,234,0 chrXII 394298 . G T 2513 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=22.04;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2546,279,0 chrXII 394373 . T C 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.587;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;MQRankSum=0.736;QD=11.29;ReadPosRankSum=2.305;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1185,144,0 chrXII 394387 . C G 872 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;QD=9.18;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:905,114,0 chrXII 394391 . A G 691 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.988;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.845;QD=8.43;ReadPosRankSum=1.690;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:90:724,90,0 chrXII 394392 . G A 716 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.84;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:90:749,90,0 chrXII 394411 . T G 402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.582;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;MQRankSum=0.311;QD=5.36;ReadPosRankSum=2.906;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:54:435,54,0 chrXII 394426 . C T 574 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=8.20;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:69:607,69,0 chrXII 394430 . T A 643 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;QD=8.69;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:75:676,75,0 chrXII 394433 . C T 657 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.133;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;MQRankSum=0.492;QD=8.11;ReadPosRankSum=-1.262;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:54:690,54,0 chrXII 394445 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;QD=11.74;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1160,132,0 chrXII 394482 . T G 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.01;FS=3.190;HaplotypeScore=3.6951;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;MQRankSum=-0.585;QD=16.39;ReadPosRankSum=1.662;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2491,285,0 chrXII 394493 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=18.40;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2959,333,0 chrXII 394534 . G A 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=14.5941;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=-1.661;QD=20.27;ReadPosRankSum=1.708;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3012,333,0 chrXII 394605 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=124;Dels=0.00;FS=5.573;HaplotypeScore=6.3955;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;MQRankSum=-0.488;QD=20.52;ReadPosRankSum=2.943;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2577,297,0 chrXII 394627 . T G 2387 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=21.70;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2420,279,0 chrXII 394647 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=21.80;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2584,291,0 chrXII 394740 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.85;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2163,237,0 chrXII 394760 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.98;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2273,243,0 chrXII 394913 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.24;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2583,276,0 chrXII 394924 . A G 2477 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=18.62;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2510,285,0 chrXII 394976 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.508;QD=18.28;ReadPosRankSum=1.711;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3122,366,0 chrXII 395012 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.45;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3547,393,0 chrXII 395053 . A G 2919 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.11;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2952,327,0 chrXII 395097 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8851;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=23.69;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2923,321,0 chrXII 395140 . T A 3091 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=22.08;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3124,339,0 chrXII 395203 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.41;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3244,363,0 chrXII 395250 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=7.698;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.098;QD=22.58;ReadPosRankSum=2.415;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3194,354,0 chrXII 395272 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=20.43;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2770,324,0 chrXII 395310 . T C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.136;HaplotypeScore=6.0808;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=0.346;QD=18.93;ReadPosRankSum=1.658;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2683,315,0 chrXII 395321 . T A 2561 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=19.55;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2594,279,0 chrXII 395340 . A G 2107 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=18.32;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2140,240,0 chrXII 395347 . A C 1937 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.303;QD=16.99;ReadPosRankSum=1.701;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:1970,231,0 chrXII 395350 . G A 2013 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=17.50;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2046,222,0 chrXII 395431 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.32;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2248,240,0 chrXII 395528 . T G 1180 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=18.44;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1213,135,0 chrXII 395562 . A G 624 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=13.87;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:657,75,0 chrXII 395575 . G A 490 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=28.8096;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=15.31;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:523,57,0 chrXII 395587 . G A 492 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=29.8029;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=14.91;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:525,57,0 chrXII 395597 . G T 554 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=17.87;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:63:587,63,0 chrXII 395629 . G T 759 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=14.88;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:792,87,0 chrXII 395631 . G T 789 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=15.17;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:822,90,0 chrXII 395835 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.49;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2963,318,0 chrXII 395839 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.07;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2913,330,0 chrXII 395850 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.87;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3319,357,0 chrXII 395986 . A C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=135;Dels=0.00;FS=6.112;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.485;QD=21.09;ReadPosRankSum=2.888;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2880,327,0 chrXII 396020 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.90;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3664,408,0 chrXII 396184 . A T 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.886;QD=22.70;ReadPosRankSum=2.114;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:3,121:127:99:2916,327,0 chrXII 396237 . C A 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.263;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.326;QD=23.09;ReadPosRankSum=-0.534;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3104,326,0 chrXII 396378 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.35;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2805,303,0 chrXII 396400 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.14;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2676,291,0 chrXII 396423 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=16.44;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:1989,216,0 chrXII 396427 . T C 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=4.087;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.296;QD=15.57;ReadPosRankSum=1.084;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1948,231,0 chrXII 396475 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.19;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2106,225,0 chrXII 396529 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.61;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2043,231,0 chrXII 396553 . C T 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.393;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.087;QD=21.33;ReadPosRankSum=1.382;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2166,237,0 chrXII 396641 . A G 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.612;QD=19.21;ReadPosRankSum=1.697;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1935,219,0 chrXII 396729 . G T 1815 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.87;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1848,201,0 chrXII 396805 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.56;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1567,177,0 chrXII 396832 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.59;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1727,192,0 chrXII 396966 . G T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.71;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3368,369,0 chrXII 397049 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.040;QD=23.34;ReadPosRankSum=1.712;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4062,459,0 chrXII 397180 . A G 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=187;Dels=0.00;FS=3.001;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.416;QD=22.93;ReadPosRankSum=2.384;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4288,498,0 chrXII 397246 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.04;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3774,408,0 chrXII 397378 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.63;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3450,372,0 chrXII 397429 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.449;QD=21.15;ReadPosRankSum=2.404;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2296,255,0 chrXII 397450 . T A 1671 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=19.21;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1704,186,0 chrXII 397465 . A G 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-0.779;QD=17.22;ReadPosRankSum=1.602;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1411,162,0 chrXII 397489 . G T 1847 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=18.47;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1880,207,0 chrXII 397495 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=16.98;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1850,216,0 chrXII 397555 . A G 2335 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.79;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2368,267,0 chrXII 397561 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.64;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2272,246,0 chrXII 397684 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=19.52;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1673,186,0 chrXII 397696 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.72;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1808,195,0 chrXII 397774 . G A 1816 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.15;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1849,210,0 chrXII 397858 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=22.17;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2294,249,0 chrXII 397870 . T C 2259 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=19.82;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2292,264,0 chrXII 398071 . C T 3509.01 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=19.49;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3509,387,0 chrXII 398074 . A G 3327.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=8.869;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;MQRankSum=-1.292;QD=19.12;ReadPosRankSum=2.393;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3327,375,0 chrXII 398075 . C T 3394.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=19.96;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3394,372,0 chrXII 398086 . C G 2849 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=17.37;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2882,333,0 chrXII 398101 . T A 2382 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=17.64;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2415,267,0 chrXII 398325 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.214;DP=111;Dels=0.00;FS=5.307;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=1.448;QD=15.86;ReadPosRankSum=2.872;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:4,107:111:99:1794,207,0 chrXII 398330 . C A 1882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=110;Dels=0.00;FS=2.845;HaplotypeScore=5.0054;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=2.002;QD=17.11;ReadPosRankSum=2.338;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1915,213,0 chrXII 398382 . T A 2463 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.42;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2496,276,0 chrXII 398445 . A G 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=0.452;QD=22.36;ReadPosRankSum=1.657;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2090,237,0 chrXII 398453 . C T 1626 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.32;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1659,177,0 chrXII 398466 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.71;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1918,210,0 chrXII 398507 . A G 1125 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=9.1858;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=16.79;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1158,129,0 chrXII 398570 . T C 1807 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=76.5071;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.86;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1840,204,0 chrXII 398606 . A G 2021 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.21;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2054,240,0 chrXII 398645 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=125;Dels=0.00;FS=10.125;HaplotypeScore=13.8276;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.228;QD=20.71;ReadPosRankSum=2.331;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2622,291,0 chrXII 398693 . T C 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=0.300;QD=17.37;ReadPosRankSum=2.947;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3003,333,0 chrXII 398695 . A G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=174;Dels=0.00;FS=14.449;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-0.421;QD=16.52;ReadPosRankSum=2.407;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:2,170:174:99:2907,336,0 chrXII 398729 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.69;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3111,339,0 chrXII 398807 . G A 4943.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=24.23;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4943,531,0 chrXII 398871 . T G 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=252;Dels=0.00;FS=3.116;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.873;QD=20.39;ReadPosRankSum=1.704;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:1,249:252:99:5138,576,0 chrXII 398880 . A G 5205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.791;QD=21.24;ReadPosRankSum=1.704;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:1,242:245:99:5205,579,0 chrXII 399010 . C T 4993.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.6290;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.12;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4993,543,0 chrXII 399051 . C T 5264.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.29;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5264,588,0 chrXII 399185 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=3.366;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.934;QD=19.17;ReadPosRankSum=1.654;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3432,396,0 chrXII 399187 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.87;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3497,387,0 chrXII 399343 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.563;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=1.035;QD=20.95;ReadPosRankSum=1.689;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3331,378,0 chrXII 399382 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=20.72;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3356,366,0 chrXII 399409 . T C 2938 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=18.02;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2971,354,0 chrXII 399414 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=18.70;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3174,360,0 chrXII 399454 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.84;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3561,390,0 chrXII 399483 . C A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.74;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3696,399,0 chrXII 399513 . G A 3827.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.34;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3827,411,0 chrXII 399563 . G C 2870 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.78;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2903,327,0 chrXII 399644 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.78;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3485,387,0 chrXII 399689 . A T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=17.5842;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.73;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3341,366,0 chrXII 399805 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.4216;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.47;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3254,366,0 chrXII 399827 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3257;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.72;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3302,357,0 chrXII 399880 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.63;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3528,384,0 chrXII 399899 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.84;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3581,384,0 chrXII 400262 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.5662;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.57;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3842,417,0 chrXII 400376 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.18;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3094,339,0 chrXII 400563 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2363,255,0 chrXII 400601 . A G 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=102;Dels=0.00;FS=7.163;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.977;QD=22.92;ReadPosRankSum=2.401;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2371,261,0 chrXII 400709 . T A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.30;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3645,408,0 chrXII 400793 . T G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.732;QD=22.00;ReadPosRankSum=1.683;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3135,366,0 chrXII 400865 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.96;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3647,405,0 chrXII 400920 . C A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.67;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3662,399,0 chrXII 401097 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.98;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3741,411,0 chrXII 401327 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.511;QD=20.38;ReadPosRankSum=1.710;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3212,366,0 chrXII 401351 . T C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=3.862;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.308;QD=20.64;ReadPosRankSum=1.708;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3088,348,0 chrXII 401363 . A G 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-1.542;QD=19.55;ReadPosRankSum=1.708;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:2927,330,0 chrXII 401372 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.14;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2833,315,0 chrXII 401423 . T C 1973 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.44;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2006,231,0 chrXII 401532 . C G 2919 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.80;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2952,330,0 chrXII 401642 . T A 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.566;QD=22.73;ReadPosRankSum=1.566;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2874,318,0 chrXII 401664 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.35;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2961,324,0 chrXII 402030 . G T 3060 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.01;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3093,336,0 chrXII 402269 . G A 1861 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1894,207,0 chrXII 402353 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2084,225,0 chrXII 402932 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.322;QD=23.48;ReadPosRankSum=2.411;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2992,342,0 chrXII 402998 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=4.629;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.308;QD=23.96;ReadPosRankSum=1.713;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4312,486,0 chrXII 403049 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.50;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3504,396,0 chrXII 403061 . A C 3049 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.67;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3082,357,0 chrXII 403089 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.988;QD=19.38;ReadPosRankSum=1.662;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:2960,345,0 chrXII 403115 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.08;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3358,369,0 chrXII 403238 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=206;Dels=0.00;FS=3.250;HaplotypeScore=6.5885;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.989;QD=21.99;ReadPosRankSum=1.715;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4530,507,0 chrXII 403319 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.64;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4165,468,0 chrXII 403343 . G T 4431.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=24.62;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4431,469,0 chrXII 403405 . T A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.75;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3631,390,0 chrXII 403407 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.70;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3705,402,0 chrXII 403476 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.62;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3632,387,0 chrXII 403526 . A C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.00;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3675,432,0 chrXII 403562 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=145;Dels=0.00;FS=3.020;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.886;QD=20.00;ReadPosRankSum=2.364;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2933,339,0 chrXII 403568 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.19;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3021,333,0 chrXII 404007 . C T 4904.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.8915;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.40;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4904,525,0 chrXII 404478 . T C 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.708;QD=23.49;ReadPosRankSum=1.683;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1724,192,0 chrXII 405334 . C G 5180.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=26.0973;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.76;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,231:238:99:5180,582,0 chrXII 405433 . A C 5483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=245;Dels=0.00;FS=13.072;HaplotypeScore=19.0428;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.829;QD=22.38;ReadPosRankSum=2.888;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:3,238:245:99:5483,609,0 chrXII 405671 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.12;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3316,372,0 chrXII 405942 . C G 3384.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.76;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3384,393,0 chrXII 406201 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.58;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3118,339,0 chrXII 406472 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.187;QD=23.46;ReadPosRankSum=0.078;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4176,468,0 chrXII 406504 . A T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.25;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3807,417,0 chrXII 406528 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.92;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3323,360,0 chrXII 406565 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.76;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3829,429,0 chrXII 406709 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.72;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2922,324,0 chrXII 406726 . G C 3116 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.23;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3149,363,0 chrXII 406862 . A G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.480;QD=20.82;ReadPosRankSum=1.679;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2740,309,0 chrXII 406873 . G C 2773 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.39;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,136:143:99:2806,318,0 chrXII 407016 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.02;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3083,333,0 chrXII 407092 . A C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5530;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.304;QD=20.89;ReadPosRankSum=1.679;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2811,330,0 chrXII 407206 . A T 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.062;DP=137;Dels=0.00;FS=19.743;HaplotypeScore=14.2517;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.390;QD=19.92;ReadPosRankSum=3.356;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:2762,303,0 chrXII 407362 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=127;Dels=0.00;FS=9.452;HaplotypeScore=7.4680;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.484;QD=23.54;ReadPosRankSum=2.929;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:3022,339,0 chrXII 407394 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.05;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3252,357,0 chrXII 407405 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.47;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3254,363,0 chrXII 407445 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=173;Dels=0.00;FS=2.983;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.504;QD=20.66;ReadPosRankSum=2.421;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3575,402,0 chrXII 407572 . C A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.64;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3509,378,0 chrXII 407585 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8928;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.42;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3385,363,0 chrXII 407639 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.477;QD=19.75;ReadPosRankSum=1.681;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2719,300,0 chrXII 407663 . T C 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=130;Dels=0.00;FS=9.771;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.016;QD=20.45;ReadPosRankSum=2.945;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:3,125:130:99:2692,303,0 chrXII 407739 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.0513;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.82;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3477,378,0 chrXII 407808 . C G 2253 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.86;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2286,267,0 chrXII 407901 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1187;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.66;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3810,423,0 chrXII 407942 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.6410;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.316;QD=21.94;ReadPosRankSum=1.710;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3511,396,0 chrXII 408015 . T G 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.482;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.140;QD=21.09;ReadPosRankSum=0.016;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2374,237,0 chrXII 408033 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=18.95;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2250,255,0 chrXII 408039 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=18.66;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2198,243,0 chrXII 408068 . A G 2684 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.54;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2717,312,0 chrXII 408160 . C A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.79;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3258,357,0 chrXII 408182 . T C 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=148;Dels=0.00;FS=3.027;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.158;QD=18.76;ReadPosRankSum=2.416;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2810,321,0 chrXII 408368 . G C 2444 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.21;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2477,288,0 chrXII 408486 . G T 6164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.704;QD=24.96;ReadPosRankSum=1.017;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:6164,658,0 chrXII 408573 . C A 6736.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.41;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:6736,741,0 chrXII 408647 . G A 6689.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=13.7558;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.97;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:6689,724,0 chrXII 408771 . A G 5874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=276;Dels=0.00;FS=5.125;HaplotypeScore=16.5989;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.066;QD=21.28;ReadPosRankSum=3.379;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:4,272:276:99:5874,675,0 chrXII 408804 . G A 5421.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.59;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5421,580,0 chrXII 409113 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.51;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3291,363,0 chrXII 409269 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.94;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3017,330,0 chrXII 409339 . T A 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=155;Dels=0.00;FS=2.887;HaplotypeScore=9.6467;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=1.530;QD=24.85;ReadPosRankSum=2.402;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3852,396,0 chrXII 409417 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=4.345;HaplotypeScore=14.2350;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.263;QD=21.17;ReadPosRankSum=1.687;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3281,369,0 chrXII 409567 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4088;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.56;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3471,390,0 chrXII 409581 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.97;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3355,369,0 chrXII 409600 . C G 3052 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.07;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3085,357,0 chrXII 410006 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8811;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.90;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4077,453,0 chrXII 410525 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.34;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3822,423,0 chrXII 410574 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5504;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.27;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2506,279,0 chrXII 410580 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.35;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2381,261,0 chrXII 410612 . C G 2232 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.58;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2265,255,0 chrXII 410876 . T C 7530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=1;MQRankSum=0.649;QD=24.37;ReadPosRankSum=2.394;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:3,306:309:99:7530,837,0 chrXII 410914 . C T 7489.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=19.7416;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.83;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,327:328:99:7489,849,0 chrXII 410950 . T C 6549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=12.5742;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.207;QD=21.13;ReadPosRankSum=1.687;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:1,308:310:99:6549,767,0 chrXII 411034 . C T 7661.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=21.9736;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=20.65;SB=-3.763e+03 GT:AD:DP:GQ:PL 1/1:0,366:371:99:7661,829,0 chrXII 411364 . A C 5553.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=27.5867;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=3;QD=20.64;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5553,645,0 chrXII 411427 . G C 4909.01 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=20.6206;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=4;QD=19.40;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,248:253:99:4909,584,0 chrXII 411457 . C T 5584.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.9097;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=1;QD=22.70;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5584,609,0 chrXII 411601 . T C 2861 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=200;Dels=0.00;FS=3.979;HaplotypeScore=10.5866;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=4;MQRankSum=-0.595;QD=14.30;ReadPosRankSum=1.697;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:2894,345,0 chrXII 411634 . A G 2496 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=4;MQRankSum=-1.592;QD=12.36;ReadPosRankSum=1.715;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:2529,283,0 chrXII 411637 . T C 2443 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=4;QD=12.28;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:2476,294,0 chrXII 411640 . C T 2262 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=4;QD=11.72;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2295,264,0 chrXII 411643 . T C 1990 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=4;QD=10.76;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2023,248,0 chrXII 411664 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=14.54;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2417,279,0 chrXII 411760 . T A 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.3419;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.527;QD=22.18;ReadPosRankSum=1.712;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3770,414,0 chrXII 411818 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=20.43;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3718,423,0 chrXII 411841 . T A 3198 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=19.86;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3231,360,0 chrXII 411856 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=17.53;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2890,336,0 chrXII 412172 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.28;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3699,411,0 chrXII 412219 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.24;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3092,348,0 chrXII 412228 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=2.725;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.885;QD=19.49;ReadPosRankSum=2.312;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2820,324,0 chrXII 412236 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.19;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2940,318,0 chrXII 412333 . A G 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.638;QD=21.62;ReadPosRankSum=1.671;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2498,282,0 chrXII 412547 . A T 1147 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=49.3148;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=19.78;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1180,129,0 chrXII 412590 . T G 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.757;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;MQRankSum=-0.577;QD=16.47;ReadPosRankSum=1.611;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:972,111,0 chrXII 412603 . A T 885 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=16.39;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:918,102,0 chrXII 412612 . C G 814 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=15.96;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:847,96,0 chrXII 412752 . C A 1343 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=23.56;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1376,156,0 chrXII 412803 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=17.26;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:775,90,0 chrXII 412833 . C T 994 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=17.14;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1027,111,0 chrXII 412896 . T C 1468 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=20.39;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1501,168,0 chrXII 412966 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=29.3608;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=0.40;SB=-4.008e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:6:53,6,0 chrXII 413016 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=15.80;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1155,129,0 chrXII 413032 . A G 1335 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=19.35;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1368,156,0 chrXII 413076 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=55.4750;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=15.95;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1197,135,0 chrXII 413115 . A T 2085 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=21.72;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2118,228,0 chrXII 413139 . C G 2557 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=22.04;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2590,285,0 chrXII 413314 . T C 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.7184;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.905;QD=24.79;ReadPosRankSum=1.674;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4463,501,0 chrXII 413496 . G C 4457.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4457,498,0 chrXII 413585 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.9225;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.01;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4740,516,0 chrXII 413599 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.65;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4330,468,0 chrXII 413615 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.152;QD=20.34;ReadPosRankSum=1.657;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3783,429,0 chrXII 413702 . G T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3849,417,0 chrXII 413867 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.23;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3635,393,0 chrXII 414358 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=3.915;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.169;QD=23.76;ReadPosRankSum=1.654;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3193,360,0 chrXII 414436 . G C 3974.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.3406;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.45;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3974,456,0 chrXII 414591 . G A 5025.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.37;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5025,549,0 chrXII 414696 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.54;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4395,483,0 chrXII 414769 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7323;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.06;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3559,384,0 chrXII 414915 . A G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=133;Dels=0.00;FS=3.530;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.951;QD=23.47;ReadPosRankSum=1.680;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3154,351,0 chrXII 414993 . G C 2991 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.55;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:3024,342,0 chrXII 415537 . A G 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.941;QD=22.71;ReadPosRankSum=2.890;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2736,303,0 chrXII 415898 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.83;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3972,432,0 chrXII 416026 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.16;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3922,426,0 chrXII 416228 . G A 4117.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.1145;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.80;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4117,438,0 chrXII 416362 . A C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.352;QD=22.45;ReadPosRankSum=1.654;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3041,342,0 chrXII 416401 . T C 3153 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.85;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3186,369,0 chrXII 416464 . C G 2704 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.64;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2737,321,0 chrXII 416793 . G A 5051.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.37;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5051,570,0 chrXII 416803 . C T 5183.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.7185;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.49;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5183,567,0 chrXII 416876 . C G 5756.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=10.7076;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.16;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5756,677,0 chrXII 416918 . G A 6007.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.19;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:6007,657,0 chrXII 417083 . C T 5904.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=19.0315;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.11;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,262:267:99:5904,637,0 chrXII 417137 . G A 5300.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.4365;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.08;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5300,594,0 chrXII 417289 . G A 5481.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.37;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5481,600,0 chrXII 417298 . G A 5409.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=14.1624;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.49;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5409,594,0 chrXII 417373 . G A 4722.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.70;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4722,507,0 chrXII 417445 . A T 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.359;QD=19.96;ReadPosRankSum=1.684;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4332,477,0 chrXII 417465 . G A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.58;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4483,486,0 chrXII 417575 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.33;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4667,510,0 chrXII 417641 . C T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.03;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3849,426,0 chrXII 417656 . T A 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.3637;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=-1.647;QD=16.70;ReadPosRankSum=2.402;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:3490,399,0 chrXII 417665 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.5125;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=15.78;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,220:227:99:3582,420,0 chrXII 417943 . C A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.53;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4026,441,0 chrXII 417974 . G C 3115 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.7335;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.77;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3148,369,0 chrXII 418307 . C T 2764 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.11;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2797,306,0 chrXII 418313 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.201;QD=20.44;ReadPosRankSum=1.676;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2588,297,0 chrXII 418391 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.288;QD=21.48;ReadPosRankSum=1.710;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3372,384,0 chrXII 418481 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.8972;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.577;QD=23.13;ReadPosRankSum=1.710;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3631,405,0 chrXII 418904 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.60;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3864,417,0 chrXII 419081 . T C 5877.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.14;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5877,675,0 chrXII 419132 . G A 5213.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5213,556,0 chrXII 420086 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.02;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3564,402,0 chrXII 420104 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6794;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.75;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3320,372,0 chrXII 420269 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.413;DP=157;Dels=0.00;FS=3.211;HaplotypeScore=14.6121;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.413;QD=20.59;ReadPosRankSum=-1.173;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3269,358,0 chrXII 420322 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4932;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.95;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:2744,294,0 chrXII 420323 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4597;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.63;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2678,291,0 chrXII 420434 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3991,429,0 chrXII 420559 . G A 4716.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.56;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4716,510,0 chrXII 420674 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.99;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3430,399,0 chrXII 420725 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.61;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3265,363,0 chrXII 420877 . C A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.8864;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.64;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3783,414,0 chrXII 421001 . A G 4560.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.27;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4560,513,0 chrXII 421117 . C T 6182.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.51;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6182,693,0 chrXII 421364 . G A 2238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.507;QD=22.61;ReadPosRankSum=0.647;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2271,243,0 chrXII 421465 . C T 881 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;QD=14.21;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:914,102,0 chrXII 421486 . A G 784 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=344.0998;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=11.20;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:96:817,96,0 chrXII 421733 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=23.46;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3331,372,0 chrXII 421926 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.37;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2897,330,0 chrXII 421962 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.54;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3411,372,0 chrXII 422168 . C A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=14.4741;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.63;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3804,417,0 chrXII 422238 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=180;Dels=0.00;FS=3.847;HaplotypeScore=12.1010;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.793;QD=22.84;ReadPosRankSum=1.673;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:4111,462,0 chrXII 422307 . A G 4154.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.45;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4154,471,0 chrXII 422366 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.70;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3656,396,0 chrXII 422460 . T G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=3.629;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.005;QD=20.06;ReadPosRankSum=1.684;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2901,336,0 chrXII 422511 . G A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.5047;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.80;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4287,468,0 chrXII 422565 . A C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=184;Dels=0.00;FS=3.028;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.456;QD=20.95;ReadPosRankSum=2.369;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:3855,450,0 chrXII 423102 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3862,417,0 chrXII 423150 . C G 2898 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.6321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.27;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2931,351,0 chrXII 423180 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.74;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2816,315,0 chrXII 423416 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.35;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1720,186,0 chrXII 423640 . A G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=115;Dels=0.00;FS=7.107;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-1.671;QD=21.15;ReadPosRankSum=1.701;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2465,282,0 chrXII 423821 . G A 5770.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.5100;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.87;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5770,627,0 chrXII 423854 . G C 6217.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=18.8413;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.46;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:6217,693,0 chrXII 424103 . A G 6915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=17.2274;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.598;QD=22.23;ReadPosRankSum=1.721;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:1,309:311:99:6915,777,0 chrXII 424138 . T C 6331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=309;Dels=0.00;FS=4.856;HaplotypeScore=18.7555;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.093;QD=20.49;ReadPosRankSum=1.676;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,308:309:99:6331,761,0 chrXII 424315 . T C 8494.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.986;DP=393;Dels=0.00;FS=7.337;HaplotypeScore=34.4831;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.031;QD=21.61;ReadPosRankSum=4.170;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:6,387:393:99:8494,975,0 chrXII 424411 . G C 7867.01 filter AC=2;AF=1.00;AN=2;DP=393;Dels=0.00;FS=0.000;HaplotypeScore=26.7888;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.02;SB=-3.361e+03 GT:AD:DP:GQ:PL 1/1:0,384:393:99:7867,961,0 chrXII 424491 . T C 10317.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.107;DP=464;Dels=0.00;FS=20.467;HaplotypeScore=28.3378;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.408;QD=22.23;ReadPosRankSum=4.138;SB=-5.235e+03 GT:AD:DP:GQ:PL 1/1:6,456:464:99:10317,1170,0 chrXII 424702 . T C 7174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=326;Dels=0.00;FS=4.879;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.446;QD=22.01;ReadPosRankSum=1.413;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:1,325:326:99:7174,842,0 chrXII 424898 . C G 5363.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.25;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5363,603,0 chrXII 425059 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.01;FS=0.000;HaplotypeScore=11.0883;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.52;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4459,480,0 chrXII 425314 . T C 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=2.942;HaplotypeScore=124.6615;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.769;QD=19.42;ReadPosRankSum=2.344;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2733,324,0 chrXII 425404 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=3.014;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.236;QD=21.23;ReadPosRankSum=2.406;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3630,408,0 chrXII 425550 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.267;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-0.673;QD=20.21;ReadPosRankSum=1.710;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3247,369,0 chrXII 425551 . C A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.57;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3386,372,0 chrXII 425641 . C A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.32;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4621,507,0 chrXII 425696 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.2138;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.33;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4019,438,0 chrXII 425939 . A T 4162.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.77;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4162,450,0 chrXII 426710 . C T 258 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.13;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:291,33,0 chrXII 426754 . A C 474 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=0;QD=13.17;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:507,57,0 chrXII 426760 . G A 453 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;QD=11.62;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:486,54,0 chrXII 426762 . A G 449 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=11.22;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:54:482,54,0 chrXII 426793 . A T 670 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=10.81;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:75:703,75,0 chrXII 426802 . C A 692 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=9.75;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:84:725,84,0 chrXII 426805 . T G 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;MQRankSum=-1.881;QD=9.37;ReadPosRankSum=2.387;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,76:78:84:764,84,0 chrXII 426854 . T G 1661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.544;DP=87;Dels=0.00;FS=11.664;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=-1.147;QD=19.09;ReadPosRankSum=0.722;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1694,154,0 chrXII 427050 . G C 1646 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=19.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1679,192,0 chrXII 427051 . G A 1709 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=21.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1742,192,0 chrXII 427121 . A T 993.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;DP=89;Dels=0.00;FS=92.613;HaplotypeScore=5.8682;MLEAC=1;MLEAF=0.500;MQ=33.27;MQ0=0;MQRankSum=-1.457;QD=11.16;ReadPosRankSum=-6.831;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,61:89:99:1023,0,190 chrXII 427223 . T C 1180 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=21.45;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1213,141,0 chrXII 427313 . C T 765 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=9.94;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:93:798,93,0 chrXII 427325 . T C 625 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=8.01;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:78:658,78,0 chrXII 427327 . T G 607 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;MQRankSum=-1.022;QD=7.78;ReadPosRankSum=1.688;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:75:640,75,0 chrXII 427328 . C A 655 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=8.19;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:78:688,78,0 chrXII 427358 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=13.02;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1439,162,0 chrXII 427490 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.21;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3143,339,0 chrXII 427615 . T A 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=163;Dels=0.00;FS=2.686;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.701;QD=23.55;ReadPosRankSum=2.389;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3839,435,0 chrXII 427645 . T A 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=155;Dels=0.03;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.041;QD=19.68;ReadPosRankSum=2.368;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3083,342,0 chrXII 427646 . T A 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=159;Dels=0.01;FS=2.556;HaplotypeScore=5.1962;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.688;QD=20.10;ReadPosRankSum=2.917;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3229,345,0 chrXII 427886 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.3880;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=24.31;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5057,549,0 chrXII 428126 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=160;Dels=0.00;FS=9.200;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.314;QD=21.93;ReadPosRankSum=2.917;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:3,154:160:99:3508,405,0 chrXII 428166 . G C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.81;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,173:178:99:3883,450,0 chrXII 428333 . C G 3006 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.32;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3039,351,0 chrXII 428399 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.62;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2952,321,0 chrXII 428891 . T A 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.549;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.456;QD=22.71;ReadPosRankSum=1.711;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3701,405,0 chrXII 429078 . A G 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.122;QD=20.63;ReadPosRankSum=1.611;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2385,279,0 chrXII 429122 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.99;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2677,291,0 chrXII 429313 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2377,258,0 chrXII 429498 . C G 3000 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.44;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3033,342,0 chrXII 429647 . T A 3168 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.56;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3201,345,0 chrXII 429675 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.74;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3584,387,0 chrXII 430007 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3329,384,0 chrXII 430049 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.67;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3456,390,0 chrXII 430362 . G T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3749,402,0 chrXII 430541 . G C 3477.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3477,393,0 chrXII 430703 . C A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3882,435,0 chrXII 431555 . C A 2932 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2965,318,0 chrXII 431640 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.90;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3165,357,0 chrXII 431739 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.070;QD=24.34;ReadPosRankSum=1.688;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3822,429,0 chrXII 431957 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3078,339,0 chrXII 432335 . A G 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.715;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.176;QD=23.26;ReadPosRankSum=1.691;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3885,432,0 chrXII 432798 . A G 2810 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2843,312,0 chrXII 432874 . A G 2617 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2650,291,0 chrXII 433245 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2887,315,0 chrXII 433420 . G C 4300.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.40;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4300,498,0 chrXII 433567 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.2227;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.08;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4240,495,0 chrXII 433914 . T C 759 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;QD=19.46;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:96:792,96,0 chrXII 434144 . C G 1056 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.20;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1089,126,0 chrXII 434151 . C T 1113 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.12;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1146,126,0 chrXII 434305 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.93;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2501,270,0 chrXII 434356 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.17;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3092,339,0 chrXII 435003 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.59;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3610,393,0 chrXII 435152 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.26;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3396,375,0 chrXII 435312 . A T 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=108;Dels=0.00;FS=11.000;HaplotypeScore=14.9648;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.748;QD=22.94;ReadPosRankSum=2.113;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2511,279,0 chrXII 435366 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.65;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3771,408,0 chrXII 435396 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.48;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3687,399,0 chrXII 435552 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=4.250;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.314;QD=21.25;ReadPosRankSum=1.709;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3199,375,0 chrXII 435615 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.01;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3820,414,0 chrXII 435711 . G A 2820 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=22.03;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2853,315,0 chrXII 435717 . A G 2548 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=126;Dels=0.00;FS=6.126;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-0.540;QD=20.22;ReadPosRankSum=2.944;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2581,285,0 chrXII 435721 . T C 2329 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-1.022;QD=19.09;ReadPosRankSum=1.647;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2362,264,0 chrXII 435756 . A G 1981 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=19.23;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2014,237,0 chrXII 435774 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.40;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2089,228,0 chrXII 435837 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.20;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3095,330,0 chrXII 435951 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=22.05;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2591,288,0 chrXII 435960 . T A 2399 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.42;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2432,276,0 chrXII 436012 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.8548;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.510;QD=20.30;ReadPosRankSum=1.700;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2266,258,0 chrXII 436062 . T G 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=3.979;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.171;QD=22.64;ReadPosRankSum=1.699;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2455,273,0 chrXII 436084 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.82;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2269,246,0 chrXII 436323 . A G 2054 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.75;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2087,246,0 chrXII 436389 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.66;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2450,285,0 chrXII 436416 . A G 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.721;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.425;QD=22.63;ReadPosRankSum=1.699;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2432,270,0 chrXII 436508 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2752,315,0 chrXII 436725 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2659,294,0 chrXII 436791 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=118;Dels=0.00;FS=7.360;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.265;QD=23.97;ReadPosRankSum=2.407;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2862,315,0 chrXII 437175 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=24.65;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2473,264,0 chrXII 437355 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=126;Dels=0.00;FS=3.045;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.561;QD=21.03;ReadPosRankSum=2.410;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2683,312,0 chrXII 437418 . G T 2168 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=21.68;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2201,237,0 chrXII 437424 . A G 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=99;Dels=0.00;FS=2.837;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=0.389;QD=20.14;ReadPosRankSum=2.400;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2027,225,0 chrXII 437438 . A G 1949 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.49;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1982,222,0 chrXII 437564 . A C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.167;QD=23.43;ReadPosRankSum=1.699;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2493,285,0 chrXII 437594 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=20.32;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1923,213,0 chrXII 437610 . C A 1836 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.53;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1869,204,0 chrXII 437841 . C A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.24;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3291,363,0 chrXII 438212 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.96;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3559,390,0 chrXII 438294 . T C 2206 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.28;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2239,252,0 chrXII 438353 . T A 2336 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.60;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2369,255,0 chrXII 438375 . C A 2389 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.54;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2422,261,0 chrXII 438493 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.2897;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.14;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3448,378,0 chrXII 438775 . G C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.76;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3655,414,0 chrXII 438877 . A G 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=3.271;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.050;QD=22.61;ReadPosRankSum=1.715;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4702,531,0 chrXII 438989 . G T 4927.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.2806;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.50;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4927,552,0 chrXII 439125 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.83;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3428,372,0 chrXII 439126 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=2.936;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.189;QD=21.28;ReadPosRankSum=2.355;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3319,378,0 chrXII 439413 . C A 2887 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.55;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2920,318,0 chrXII 439452 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2869,312,0 chrXII 439587 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.034;QD=22.23;ReadPosRankSum=1.708;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3234,372,0 chrXII 439662 . T C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=136;Dels=0.00;FS=4.061;HaplotypeScore=8.3868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.423;QD=23.21;ReadPosRankSum=-0.321;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3190,366,0 chrXII 440042 . A C 3551.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6431;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.79;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3551,399,0 chrXII 440337 . G A 1199 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.90;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1232,138,0 chrXII 440342 . A T 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=70;Dels=0.00;FS=6.748;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.091;QD=15.23;ReadPosRankSum=2.307;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1099,114,0 chrXII 440952 . G A 5235.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.0272;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.28;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5235,567,0 chrXII 441152 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.39;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3134,339,0 chrXII 441612 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.82;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1997,225,0 chrXII 441632 . G C 2074 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.14;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2107,240,0 chrXII 441709 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.06;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3921,447,0 chrXII 442034 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.27;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3616,393,0 chrXII 442856 . G A 1947 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.28;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1980,219,0 chrXII 443030 . C T 4588.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.92;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4588,498,0 chrXII 443164 . C G 4190.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.17;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4190,483,0 chrXII 443231 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.5840;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.29;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4058,462,0 chrXII 443303 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3529,399,0 chrXII 443985 . A T 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=3.128;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.600;QD=23.38;ReadPosRankSum=1.663;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3507,384,0 chrXII 444126 . A T 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.814;QD=22.41;ReadPosRankSum=1.706;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2991,321,0 chrXII 444569 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.57;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3058,336,0 chrXII 444693 . G A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.28;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3362,363,0 chrXII 444806 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=128;Dels=0.00;FS=3.878;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.214;QD=20.35;ReadPosRankSum=1.705;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2638,291,0 chrXII 444817 . A G 2976 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.52;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3009,339,0 chrXII 444864 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.14;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3678,414,0 chrXII 445043 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=23.56;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3167,342,0 chrXII 445082 . A C 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.670;QD=19.17;ReadPosRankSum=1.709;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2928,327,0 chrXII 445085 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.39;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2922,318,0 chrXII 445132 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.38;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2606,279,0 chrXII 445179 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.40;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2387,267,0 chrXII 445203 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.22;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2282,249,0 chrXII 445205 . G C 2054 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.38;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2087,234,0 chrXII 445227 . T C 2114 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.22;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2147,249,0 chrXII 445298 . G T 1829 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.04;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1862,207,0 chrXII 445342 . A T 1705 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.36;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1738,189,0 chrXII 445552 . T A 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.564;QD=24.25;ReadPosRankSum=1.698;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2555,276,0 chrXII 445923 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=206;Dels=0.00;FS=6.348;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.925;QD=20.36;ReadPosRankSum=2.425;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,201:206:99:4194,477,0 chrXII 446046 . A G 5118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.579;DP=243;Dels=0.00;FS=12.188;HaplotypeScore=21.2192;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.154;QD=21.06;ReadPosRankSum=3.749;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:5,234:243:99:5118,579,0 chrXII 446217 . C T 5779.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=20.5395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,253:257:99:5779,642,0 chrXII 446340 . A G 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.238;DP=235;Dels=0.00;FS=8.524;HaplotypeScore=9.7367;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.968;QD=21.40;ReadPosRankSum=3.327;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:4,231:235:99:5028,567,0 chrXII 446652 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.5934;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.53;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3264,372,0 chrXII 446902 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.79;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3807,426,0 chrXII 447260 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.3285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3796,423,0 chrXII 447548 . A G 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.587;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.971;QD=18.26;ReadPosRankSum=2.933;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,102:105:99:1950,222,0 chrXII 447928 . T C 2877 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.20;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2910,333,0 chrXII 447968 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.35;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3690,414,0 chrXII 447993 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.864;QD=21.54;ReadPosRankSum=2.890;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:4158,477,0 chrXII 448167 . A G 5366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=252;Dels=0.00;FS=3.152;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.122;QD=21.29;ReadPosRankSum=1.718;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:1,249:252:99:5366,609,0 chrXII 448195 . A G 5209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=260;Dels=0.00;FS=6.059;HaplotypeScore=9.3470;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.673;QD=20.03;ReadPosRankSum=2.825;SB=-3.213e+03 GT:AD:DP:GQ:PL 1/1:3,255:260:99:5209,585,0 chrXII 448425 . T A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.53;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4155,444,0 chrXII 448476 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.5630;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.292;QD=20.16;ReadPosRankSum=1.690;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3347,375,0 chrXII 448551 . T C 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=3.941;HaplotypeScore=8.8225;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.334;QD=22.17;ReadPosRankSum=1.641;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2582,291,0 chrXII 448739 . C A 2437 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=23.21;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2470,270,0 chrXII 448793 . G C 2462 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.38;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2495,285,0 chrXII 448855 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.47;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2638,285,0 chrXII 448923 . G A 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.448;QD=20.44;ReadPosRankSum=0.478;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2404,261,0 chrXII 448924 . C G 2251 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.24;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2284,258,0 chrXII 449017 . A T 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.512;QD=20.44;ReadPosRankSum=1.683;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1484,159,0 chrXII 449021 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.53;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1330,153,0 chrXII 449028 . T A 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=9.744;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.420;QD=20.91;ReadPosRankSum=1.680;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1413,153,0 chrXII 449248 . A T 1694 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.55;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1727,189,0 chrXII 449654 . A G 1434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-1.273;QD=17.28;ReadPosRankSum=1.649;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1467,165,0 chrXII 449709 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=22.43;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1760,192,0 chrXII 449747 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=20.86;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1994,234,0 chrXII 449848 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=24.99;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2507,273,0 chrXII 449908 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=18.74;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1944,216,0 chrXII 449924 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=17.28;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1899,216,0 chrXII 449944 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=92.7273;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=14.92;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1809,204,0 chrXII 449966 . G A 1573 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=12.29;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1606,180,0 chrXII 449970 . T G 1552 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.656;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;MQRankSum=0.042;QD=12.62;ReadPosRankSum=1.704;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1585,183,0 chrXII 449971 . T C 1622 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.610;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;MQRankSum=-0.475;QD=13.08;ReadPosRankSum=1.704;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1655,183,0 chrXII 449992 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=14.81;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2062,225,0 chrXII 450041 . A T 2717 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=17.53;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2750,309,0 chrXII 450044 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=18.59;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2840,312,0 chrXII 450071 . A G 2999 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.98;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3032,348,0 chrXII 450128 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=23.55;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2883,312,0 chrXII 450178 . A T 2658 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=22.34;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2691,294,0 chrXII 450232 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=20.14;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3114,339,0 chrXII 450246 . C G 3178 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.50;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3211,357,0 chrXII 450324 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=24.47;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3940,426,0 chrXII 450393 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=25.62;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3689,399,0 chrXII 450452 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1055;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=21.52;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3154,357,0 chrXII 450506 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=20.93;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2901,312,0 chrXII 450531 . C A 2909 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=21.87;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2942,321,0 chrXII 450572 . T A 2384 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=19.87;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2417,264,0 chrXII 450591 . C G 2195 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=19.42;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2228,255,0 chrXII 450600 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=19.42;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2130,234,0 chrXII 450619 . T A 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=5.185;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;MQRankSum=-0.752;QD=16.55;ReadPosRankSum=1.697;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1671,186,0 chrXII 450639 . T A 1431 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=15.90;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1464,165,0 chrXII 450676 . A G 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;MQRankSum=0.166;QD=11.86;ReadPosRankSum=1.685;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:911,102,0 chrXII 450714 . A T 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;MQRankSum=0.914;QD=11.53;ReadPosRankSum=1.010;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:93:863,93,0 chrXII 450720 . A G 799 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=10.24;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:93:832,93,0 chrXII 450731 . A G 805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=4.531;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;MQRankSum=-1.496;QD=9.15;ReadPosRankSum=1.693;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:838,99,0 chrXII 450791 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=13.11;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1869,216,0 chrXII 450813 . A G 2036 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=16.16;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2069,234,0 chrXII 450835 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=18.47;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2286,249,0 chrXII 450851 . C T 1830 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=15.91;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1863,213,0 chrXII 450868 . A G 1628 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=15.50;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1661,195,0 chrXII 450962 . T A 2653 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=20.89;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2686,297,0 chrXII 451147 . G A 781 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.11;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:87:814,87,0 chrXII 451157 . T C 741 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.58;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:87:774,87,0 chrXII 451190 . G A 547 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.54;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:63:580,63,0 chrXII 451257 . T C 209.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=17.42;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:242,27,0 chrXII 459475 . G C 265 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=16.0821;MLEAC=2;MLEAF=1.00;MQ=6.11;MQ0=955;QD=0.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,950:1000:36:298,36,0 chrXII 459549 . G C 6993.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=89.5928;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=538;QD=6.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,960:1000:99:6993,804,0 chrXII 459815 . T C 152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.706;DP=1000;DS;Dels=0.01;FS=40.749;HaplotypeScore=326.9400;MLEAC=1;MLEAF=0.500;MQ=39.26;MQ0=0;MQRankSum=-1.447;QD=0.15;ReadPosRankSum=5.034;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:693,299:995:99:182,0,2579 chrXII 460123 . C G 19957.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=7.1386;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=19.96;SB=-1.226e+04 GT:AD:DP:GQ:PL 1/1:0,998:1000:99:19957,2367,0 chrXII 460417 . T A 868 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.686;DP=1000;DS;Dels=0.00;FS=245.980;HaplotypeScore=743.2070;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;MQRankSum=-4.008;QD=0.87;ReadPosRankSum=10.025;SB=-3.373e+03 GT:AD:DP:GQ:PL 1/1:44,956:1000:99:901,117,0 chrXII 460659 . C T 13374.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.725;DP=997;DS;Dels=0.00;FS=0.000;HaplotypeScore=22.1560;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=52;MQRankSum=1.681;QD=13.41;ReadPosRankSum=1.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,994:997:99:13374,1644,0 chrXII 460686 . A T 2776.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-19.250;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=897.5647;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=137;MQRankSum=-0.771;QD=2.78;ReadPosRankSum=-18.777;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:603,397:1000:99:2806,0,4867 chrXII 481898 . C A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DP=24;Dels=0.00;FS=14.730;HaplotypeScore=22.3500;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=7;MQRankSum=1.059;QD=2.38;ReadPosRankSum=0.423;SB=-4.675e+01 GT:AD:DP:GQ:PL 0/1:9,12:24:34:87,0,34 chrXII 481906 . C A 16.20 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=1;MQRankSum=0.727;QD=3.24;ReadPosRankSum=0.727;SB=0.077 GT:AD:DP:GQ:PL 0/1:1,3:5:14:46,0,14 chrXII 490443 . A G 745 filter AC=2;AF=1.00;AN=2;BaseQRankSum=9.331;DP=136;DS;Dels=0.00;FS=361.080;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=3;MQRankSum=9.052;QD=5.48;ReadPosRankSum=9.463;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:87,46:136:87:778,87,0 chrXII 490487 . T C 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;MQRankSum=-1.282;QD=15.99;ReadPosRankSum=1.687;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1264,144,0 chrXII 490579 . T G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.609;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=-0.806;QD=20.75;ReadPosRankSum=1.664;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2170,246,0 chrXII 490608 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=22.95;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2580,276,0 chrXII 490675 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.98;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2630,288,0 chrXII 493774 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=3.129;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.451;QD=19.26;ReadPosRankSum=1.685;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2922,330,0 chrXII 493890 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5137;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.07;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3737,408,0 chrXII 494326 . T A 2360 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.48;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2393,264,0 chrXII 495002 . C G 2444 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2477,282,0 chrXII 496095 . C T 1455 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1488,162,0 chrXII 496489 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3493,381,0 chrXII 497835 . T C 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=2.798;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.960;QD=23.12;ReadPosRankSum=2.423;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4231,489,0 chrXII 498457 . T C 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=4.125;HaplotypeScore=10.1489;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=0.098;QD=21.79;ReadPosRankSum=1.699;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2343,279,0 chrXII 498565 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=61.13;MQ0=0;QD=22.74;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2193,237,0 chrXII 499674 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.89;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3321,387,0 chrXII 499857 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=3.318;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.699;QD=21.58;ReadPosRankSum=1.646;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3475,393,0 chrXII 500275 . G T 3129 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3162,345,0 chrXII 500416 . C G 2659 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.94;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2692,306,0 chrXII 500587 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.92;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3924,432,0 chrXII 500605 . C T 4608.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.1955;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.14;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4608,504,0 chrXII 500833 . T C 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=217;Dels=0.00;FS=9.503;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.284;QD=22.62;ReadPosRankSum=2.393;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4909,546,0 chrXII 501707 . T C 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=198;Dels=0.00;FS=2.905;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.366;QD=22.80;ReadPosRankSum=2.375;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4514,507,0 chrXII 502411 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.183;DP=140;Dels=0.00;FS=17.189;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.644;QD=23.57;ReadPosRankSum=3.321;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:3300,348,0 chrXII 502585 . T G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=165;Dels=0.00;FS=6.827;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.172;QD=21.56;ReadPosRankSum=2.390;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3557,405,0 chrXII 502833 . G C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.40;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3853,441,0 chrXII 503710 . A G 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.987;DP=235;Dels=0.00;FS=14.072;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.034;QD=20.85;ReadPosRankSum=4.072;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:6,228:235:99:4900,564,0 chrXII 504004 . T C 5523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=258;Dels=0.00;FS=7.116;HaplotypeScore=13.4756;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.671;QD=21.41;ReadPosRankSum=2.431;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:2,256:258:99:5523,615,0 chrXII 504031 . C T 5234.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.98;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5234,591,0 chrXII 504043 . G A 4871.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.25;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:4871,525,0 chrXII 504065 . C T 4488.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.4464;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.17;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4488,486,0 chrXII 504236 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.0011;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.89;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3822,435,0 chrXII 504665 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.91;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4057,465,0 chrXII 504668 . C A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.30;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3959,450,0 chrXII 505760 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.83;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2345,273,0 chrXII 505808 . G A 1843 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.48;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1876,204,0 chrXII 505937 . T A 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.575;QD=23.55;ReadPosRankSum=1.496;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1069,117,0 chrXII 506247 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=134;Dels=0.00;FS=2.656;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.146;QD=20.80;ReadPosRankSum=2.357;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2820,315,0 chrXII 506259 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.92;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2795,303,0 chrXII 507075 . C T 6744.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=16.5879;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.94;SB=-3.785e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:6744,738,0 chrXII 507492 . G A 2149 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2182,234,0 chrXII 507531 . A G 1433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.491;QD=21.39;ReadPosRankSum=1.681;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1466,165,0 chrXII 508286 . T C 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=75;Dels=0.00;FS=3.862;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.356;QD=20.87;ReadPosRankSum=1.542;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,72:75:99:1598,174,0 chrXII 508294 . G A 1682 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3149;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.73;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1715,186,0 chrXII 508385 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1579,171,0 chrXII 508649 . T C 2210 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.67;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2243,258,0 chrXII 508667 . A G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=3.865;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.732;QD=21.06;ReadPosRankSum=1.701;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2413,276,0 chrXII 508811 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.806;DP=161;Dels=0.00;FS=5.634;HaplotypeScore=9.2810;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-1.144;QD=22.40;ReadPosRankSum=2.931;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3606,381,0 chrXII 508832 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.63;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3764,438,0 chrXII 508866 . G A 4443.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.2022;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.10;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4443,492,0 chrXII 509046 . G A 6154.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=16.0223;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.79;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6154,681,0 chrXII 509219 . T C 4624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=223;Dels=0.00;FS=8.618;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.094;QD=20.74;ReadPosRankSum=2.383;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4624,534,0 chrXII 509342 . G A 5726.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=19.8112;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.28;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5726,621,0 chrXII 509612 . C A 5879.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.44;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5879,672,0 chrXII 509642 . G A 5426.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.6723;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.42;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5426,612,0 chrXII 509817 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.0798;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.93;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4773,537,0 chrXII 509840 . A G 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=224;Dels=0.00;FS=2.826;HaplotypeScore=16.9614;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.653;QD=20.63;ReadPosRankSum=2.405;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:2,218:224:99:4622,528,0 chrXII 509982 . G A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.94;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4080,453,0 chrXII 510230 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=18.32;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1957,216,0 chrXII 510340 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=22.80;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2974,336,0 chrXII 510379 . T C 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=2.710;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;MQRankSum=-1.167;QD=14.51;ReadPosRankSum=2.408;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,115:119:99:1760,204,0 chrXII 510380 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=15.16;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1867,210,0 chrXII 510395 . A T 2244 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=14.96;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2277,261,0 chrXII 510423 . G A 1917 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=12.21;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:1950,213,0 chrXII 510433 . C G 2065 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=12.08;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:2098,240,0 chrXII 510495 . G T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.6864;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=17.38;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:3737,402,0 chrXII 510507 . C T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.7412;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.68;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4503,495,0 chrXII 510559 . C T 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.781;DP=257;Dels=0.00;FS=2.656;HaplotypeScore=19.5338;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-1.294;QD=19.23;ReadPosRankSum=-1.351;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:4941,506,0 chrXII 510593 . A G 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.130;DP=256;Dels=0.00;FS=5.452;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-0.051;QD=20.47;ReadPosRankSum=1.224;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:3,252:256:99:5240,550,0 chrXII 510600 . A T 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;DP=234;Dels=0.00;FS=9.037;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=0.184;QD=20.38;ReadPosRankSum=1.600;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:4768,509,0 chrXII 510745 . C T 6212.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.64;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:6212,684,0 chrXII 510803 . A G 5075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.676;DP=238;Dels=0.00;FS=7.879;HaplotypeScore=12.9708;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.544;QD=21.32;ReadPosRankSum=3.695;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:5,232:238:99:5075,594,0 chrXII 510901 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.28;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4177,453,0 chrXII 511071 . A C 4188.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.5296;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.28;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4188,477,0 chrXII 511197 . C T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.20;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4432,510,0 chrXII 511265 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=19.8056;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.892;QD=21.91;ReadPosRankSum=1.712;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3702,417,0 chrXII 511340 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=22.48;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3776,411,0 chrXII 511349 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=22.41;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3922,423,0 chrXII 511389 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=177;Dels=0.00;FS=7.800;HaplotypeScore=11.5203;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.035;QD=20.83;ReadPosRankSum=2.324;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3687,429,0 chrXII 511536 . G A 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.489;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;MQRankSum=0.496;QD=13.42;ReadPosRankSum=-1.448;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2327,261,0 chrXII 511578 . A T 1341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1890;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=-0.074;QD=9.00;ReadPosRankSum=1.047;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:1374,159,0 chrXII 511581 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5349;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=8.34;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:1301,150,0 chrXII 511773 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=15.84;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2440,261,0 chrXII 511785 . A T 2055 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=14.37;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2088,228,0 chrXII 511836 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=15.22;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2559,288,0 chrXII 512083 . T G 2683 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.13;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2716,312,0 chrXII 512877 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1909,204,0 chrXII 513053 . A T 682 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:78:715,78,0 chrXII 513766 . C T 6262.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.87;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6262,679,0 chrXII 514165 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.45;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3126,345,0 chrXII 514176 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.21;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3294,357,0 chrXII 514243 . C G 4155.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.8299;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.98;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,193:198:99:4155,471,0 chrXII 514581 . G C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.29;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,161:167:99:3388,390,0 chrXII 514693 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.616;QD=20.80;ReadPosRankSum=1.716;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4409,498,0 chrXII 514832 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.23;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3298,372,0 chrXII 515468 . C T 4937.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4937,543,0 chrXII 515666 . G A 6729.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=31.4337;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.51;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:6729,724,0 chrXII 515811 . C G 6935.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.70;SB=-3.988e+03 GT:AD:DP:GQ:PL 1/1:0,330:335:99:6935,804,0 chrXII 515879 . A G 7833.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=10.8204;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.406;QD=21.11;ReadPosRankSum=1.713;SB=-4.241e+03 GT:AD:DP:GQ:PL 1/1:1,370:371:99:7833,870,0 chrXII 516236 . G T 5773.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.3122;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.46;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5773,657,0 chrXII 516783 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.697;DP=157;Dels=0.00;FS=2.539;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.549;QD=22.56;ReadPosRankSum=2.916;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3542,399,0 chrXII 516845 . G T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.19;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4621,501,0 chrXII 516999 . T C 4773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=226;Dels=0.00;FS=3.148;HaplotypeScore=12.7070;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.378;QD=21.12;ReadPosRankSum=1.670;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4773,555,0 chrXII 517114 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=197;Dels=0.00;FS=2.925;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.041;QD=21.68;ReadPosRankSum=2.375;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4270,477,0 chrXII 517338 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.310;QD=22.84;ReadPosRankSum=1.709;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3471,393,0 chrXII 517614 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.77;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3197,345,0 chrXII 517747 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1830,207,0 chrXII 517958 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.72;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2554,279,0 chrXII 518152 . T A 2971 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.03;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3004,327,0 chrXII 518395 . T C 3169 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.01;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3202,369,0 chrXII 518452 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=148;Dels=0.00;FS=8.096;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.828;QD=22.14;ReadPosRankSum=2.398;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,142:148:99:3277,378,0 chrXII 518521 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3305,357,0 chrXII 518617 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=161;Dels=0.00;FS=3.206;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.773;QD=21.45;ReadPosRankSum=1.710;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3454,396,0 chrXII 519157 . A T 3036 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.38;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3069,339,0 chrXII 519163 . G C 3054 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.06;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3087,351,0 chrXII 519358 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.77;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3589,381,0 chrXII 520183 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=133;Dels=0.00;FS=6.188;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.388;QD=22.27;ReadPosRankSum=2.394;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2995,330,0 chrXII 520774 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3688,438,0 chrXII 520933 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.7924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3446,402,0 chrXII 521221 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.99;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3739,414,0 chrXII 521359 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.62;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3661,396,0 chrXII 521380 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.46;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3123,360,0 chrXII 521410 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=160;Dels=0.00;FS=2.960;HaplotypeScore=8.9966;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.258;QD=20.09;ReadPosRankSum=2.403;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3247,369,0 chrXII 521614 . C T 6627.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.39;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6627,715,0 chrXII 521782 . G A 5895.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.58;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5895,637,0 chrXII 522608 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=153;Dels=0.00;FS=2.977;HaplotypeScore=20.6856;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.139;QD=22.67;ReadPosRankSum=2.351;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3469,381,0 chrXII 522914 . G C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.82;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,186:192:99:3998,456,0 chrXII 525267 . T A 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=151;Dels=0.00;FS=6.965;HaplotypeScore=8.9966;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.464;QD=22.32;ReadPosRankSum=0.496;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3371,342,0 chrXII 525410 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3631,393,0 chrXII 525539 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.38;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3782,414,0 chrXII 525791 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.87;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2745,300,0 chrXII 525800 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.538;QD=20.31;ReadPosRankSum=1.677;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2572,294,0 chrXII 526016 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.97;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3811,408,0 chrXII 526271 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=3.479;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.268;QD=22.29;ReadPosRankSum=1.678;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2886,330,0 chrXII 526374 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8410;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.50;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2271,258,0 chrXII 526397 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.69;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2495,273,0 chrXII 526550 . T A 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.687;QD=22.56;ReadPosRankSum=1.677;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2876,315,0 chrXII 526817 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=3.8138;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.80;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3292,357,0 chrXII 526820 . C T 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=153;Dels=0.00;FS=2.762;HaplotypeScore=7.0810;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.068;QD=20.88;ReadPosRankSum=2.321;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3228,351,0 chrXII 527111 . T C 4742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=193;Dels=0.00;FS=2.571;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.984;QD=24.57;ReadPosRankSum=2.912;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4742,525,0 chrXII 527405 . C T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.85;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4478,486,0 chrXII 527518 . C T 5346.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.30;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5346,594,0 chrXII 527685 . A G 5518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=267;Dels=0.00;FS=5.808;HaplotypeScore=16.7021;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.536;QD=20.67;ReadPosRankSum=2.906;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:3,263:267:99:5518,633,0 chrXII 527715 . T C 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=241;Dels=0.00;FS=3.961;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.428;QD=21.45;ReadPosRankSum=1.689;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:5169,579,0 chrXII 527873 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.24;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2902,312,0 chrXII 528191 . T A 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.184;QD=23.39;ReadPosRankSum=1.601;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3120,336,0 chrXII 528220 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.35;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3336,366,0 chrXII 528358 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.03;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2941,330,0 chrXII 528392 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.94;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2693,297,0 chrXII 528418 . C T 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.2470;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.881;QD=21.49;ReadPosRankSum=-0.440;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,117:122:99:2655,291,0 chrXII 528452 . C A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.26;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3259,357,0 chrXII 528602 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.36;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3459,369,0 chrXII 528671 . C A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.97;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4066,456,0 chrXII 528749 . T A 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=161;Dels=0.00;FS=9.193;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=1.000;QD=19.06;ReadPosRankSum=3.098;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3101,351,0 chrXII 528758 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.78;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3429,369,0 chrXII 528902 . C A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.6416;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.22;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4262,474,0 chrXII 529055 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.58;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4599,504,0 chrXII 529097 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.400;QD=22.04;ReadPosRankSum=1.695;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4188,474,0 chrXII 529524 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.571;QD=22.04;ReadPosRankSum=1.712;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3768,423,0 chrXII 529736 . G A 4559.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.9239;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.13;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4559,513,0 chrXII 530261 . C T 4782.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4782,522,0 chrXII 530373 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.56;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3558,393,0 chrXII 530377 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.96;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3558,390,0 chrXII 530404 . G T 3108 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.72;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3141,345,0 chrXII 530678 . G T 675 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.00;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:708,75,0 chrXII 530762 . T C 638 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.33;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:75:671,75,0 chrXII 530780 . T A 1075 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.37;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1108,120,0 chrXII 530858 . T G 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.224;QD=22.11;ReadPosRankSum=1.676;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1404,156,0 chrXII 530878 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.07;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1571,171,0 chrXII 531361 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.742;QD=19.73;ReadPosRankSum=1.712;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3452,405,0 chrXII 531538 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.047;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.9835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.322;QD=22.50;ReadPosRankSum=1.289;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3870,407,0 chrXII 531970 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.4775;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.453;QD=20.98;ReadPosRankSum=1.652;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3672,429,0 chrXII 532084 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.15;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3389,381,0 chrXII 532344 . C T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.46;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3795,420,0 chrXII 532381 . A G 3022 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=17.17;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3055,348,0 chrXII 532384 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=17.10;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3230,360,0 chrXII 532399 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4591;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=16.90;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3346,360,0 chrXII 532555 . C G 4549.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.94;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4549,501,0 chrXII 532747 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=174;Dels=0.00;FS=3.033;HaplotypeScore=15.8347;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.021;QD=22.68;ReadPosRankSum=2.392;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3947,450,0 chrXII 532984 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=153;Dels=0.00;FS=2.957;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.104;QD=21.07;ReadPosRankSum=2.401;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3256,375,0 chrXII 533081 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.35;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2742,306,0 chrXII 533245 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.92;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2852,318,0 chrXII 533365 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.62;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2606,294,0 chrXII 533383 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.459;QD=20.74;ReadPosRankSum=1.641;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2397,273,0 chrXII 533966 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.8399;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.90;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4351,480,0 chrXII 534194 . A T 4971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.1894;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.976;QD=22.60;ReadPosRankSum=1.669;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4971,543,0 chrXII 534611 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2584,282,0 chrXII 535113 . T C 2160 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.6819;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.82;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2193,258,0 chrXII 535290 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.92;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2692,291,0 chrXII 535533 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.96;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3743,402,0 chrXII 535603 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.46;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4109,447,0 chrXII 535696 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=202;Dels=0.00;FS=3.279;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.554;QD=22.09;ReadPosRankSum=1.715;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4463,513,0 chrXII 535711 . C A 4948.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.45;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4948,529,0 chrXII 535744 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.66;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4050,450,0 chrXII 535960 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.99;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4078,447,0 chrXII 535963 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.76;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4051,441,0 chrXII 536152 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.98;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3582,387,0 chrXII 536245 . T A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.21;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3969,438,0 chrXII 536332 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.44;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1851,207,0 chrXII 536548 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2600,294,0 chrXII 536691 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.6454;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.91;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3172,342,0 chrXII 536776 . C T 4282.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.33;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4282,468,0 chrXII 536833 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=142;Dels=0.00;FS=3.038;HaplotypeScore=10.9939;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.729;QD=20.61;ReadPosRankSum=2.344;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:2960,348,0 chrXII 536876 . T A 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.394;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6987;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-0.127;QD=19.15;ReadPosRankSum=-0.352;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2388,242,0 chrXII 536886 . T C 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.464;DP=119;Dels=0.00;FS=17.671;HaplotypeScore=3.9666;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;MQRankSum=-1.069;QD=16.39;ReadPosRankSum=2.602;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:4,115:119:99:1983,210,0 chrXII 536924 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=0.514;QD=19.54;ReadPosRankSum=1.708;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2886,327,0 chrXII 536948 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.50;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3067,336,0 chrXII 536954 . T C 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=6.429;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.968;QD=20.33;ReadPosRankSum=1.684;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2981,339,0 chrXII 537069 . T A 1181 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=63.2873;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=15.75;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1214,135,0 chrXII 537122 . A G 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=103;Dels=0.00;FS=4.288;HaplotypeScore=10.6085;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.509;QD=15.93;ReadPosRankSum=1.698;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1674,201,0 chrXII 537160 . A T 2185 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.36;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2218,249,0 chrXII 537219 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=10.20;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1186,135,0 chrXII 537226 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=8.79;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1097,120,0 chrXII 537234 . A C 1056 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=8.25;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1089,126,0 chrXII 537237 . T C 1160 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;MQRankSum=-2.905;QD=8.47;ReadPosRankSum=2.934;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:3,134:137:99:1193,135,0 chrXII 537242 . A C 1225 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=142;Dels=0.00;FS=7.148;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;MQRankSum=-0.322;QD=8.63;ReadPosRankSum=1.707;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,139:142:99:1258,144,0 chrXII 538121 . A G 2131 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.20;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2164,243,0 chrXII 538246 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=4.025;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.371;QD=22.26;ReadPosRankSum=1.696;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2170,240,0 chrXII 538261 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.72;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1939,210,0 chrXII 538270 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.11;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1791,204,0 chrXII 538303 . G C 1810 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.2775;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=18.28;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1843,213,0 chrXII 538336 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8667;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.67;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2245,246,0 chrXII 538387 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.18;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2761,306,0 chrXII 538477 . A C 2006 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.12;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2039,231,0 chrXII 538497 . T C 2285 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.62;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2318,258,0 chrXII 538633 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.277;QD=23.68;ReadPosRankSum=1.697;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2401,270,0 chrXII 539092 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=204;Dels=0.00;FS=5.946;HaplotypeScore=14.9690;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.550;QD=22.28;ReadPosRankSum=2.946;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:4545,516,0 chrXII 539704 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.52;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1857,198,0 chrXII 539764 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1544,165,0 chrXII 539905 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.07;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1550,168,0 chrXII 539923 . T C 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.701;QD=19.33;ReadPosRankSum=1.650;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1676,189,0 chrXII 539979 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.75;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1712,198,0 chrXII 540147 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.52;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2255,264,0 chrXII 540219 . A T 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=135;Dels=0.00;FS=3.571;HaplotypeScore=10.5646;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.289;QD=19.73;ReadPosRankSum=1.706;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2696,303,0 chrXII 540258 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.88;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2878,321,0 chrXII 540405 . A G 2886 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.76;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2919,345,0 chrXII 541018 . G C 5804.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.80;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,272:279:99:5804,657,0 chrXII 541031 . T C 6045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.797;DP=298;Dels=0.00;FS=15.823;HaplotypeScore=9.8640;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-0.397;QD=20.29;ReadPosRankSum=4.679;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:8,287:298:99:6045,678,0 chrXII 541062 . T C 6973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.066;DP=350;Dels=0.00;FS=10.348;HaplotypeScore=28.7339;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.404;QD=19.92;ReadPosRankSum=4.198;SB=-3.334e+03 GT:AD:DP:GQ:PL 1/1:6,341:350:99:6973,795,0 chrXII 541159 . T A 8490.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=25.7144;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.52;SB=-3.788e+03 GT:AD:DP:GQ:PL 1/1:0,377:377:99:8490,933,0 chrXII 541253 . G T 6318.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=18.92;SB=-4.049e+03 GT:AD:DP:GQ:PL 1/1:0,330:334:99:6318,702,0 chrXII 541260 . T A 5812.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=18.16;SB=-3.939e+03 GT:AD:DP:GQ:PL 1/1:0,320:320:99:5812,639,0 chrXII 541268 . G C 5317.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=6.5894;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=16.16;SB=-3.786e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:5317,632,0 chrXII 541310 . A G 6439.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.730;DP=394;Dels=0.00;FS=7.760;HaplotypeScore=16.7105;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.707;QD=16.34;ReadPosRankSum=3.833;SB=-3.419e+03 GT:AD:DP:GQ:PL 1/1:5,388:394:99:6439,749,0 chrXII 541340 . C A 6559.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.37;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,356:357:99:6559,720,0 chrXII 541508 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.856;QD=21.78;ReadPosRankSum=1.713;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3898,438,0 chrXII 541624 . T C 2438 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.20;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2471,276,0 chrXII 541643 . T G 1832 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.51;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1865,216,0 chrXII 541663 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.76;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1965,222,0 chrXII 541773 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2246,246,0 chrXII 542005 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1775,195,0 chrXII 542794 . A G 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=198;Dels=0.00;FS=2.740;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.408;QD=22.20;ReadPosRankSum=2.425;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4395,486,0 chrXII 543100 . A G 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=15.7111;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.876;QD=15.64;ReadPosRankSum=1.569;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1394,156,0 chrXII 543116 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=15.90;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1512,165,0 chrXII 543240 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=125;Dels=0.00;FS=11.835;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.089;QD=20.82;ReadPosRankSum=2.896;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2635,294,0 chrXII 543480 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.73;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2169,240,0 chrXII 543914 . T C 1982 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2015,231,0 chrXII 544057 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=153;Dels=0.00;FS=2.563;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.125;QD=24.54;ReadPosRankSum=2.941;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3754,426,0 chrXII 544246 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4674,510,0 chrXII 544316 . A G 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=210;Dels=0.00;FS=11.231;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=2.063;QD=23.01;ReadPosRankSum=2.908;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:3,204:210:99:4833,540,0 chrXII 544654 . T C 5719.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=20.7593;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.28;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,277:282:99:5719,671,0 chrXII 544705 . T C 5771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=284;Dels=0.00;FS=15.127;HaplotypeScore=18.0524;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.463;QD=20.32;ReadPosRankSum=2.961;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:3,279:284:99:5771,686,0 chrXII 544933 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.55;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3698,399,0 chrXII 544939 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.10;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3481,378,0 chrXII 545023 . T C 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=4.840;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.173;QD=21.34;ReadPosRankSum=1.714;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4139,483,0 chrXII 545092 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=26.2125;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.89;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3447,387,0 chrXII 545104 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.04;FS=0.000;HaplotypeScore=45.3785;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=17.97;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2746,300,0 chrXII 545130 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.1070;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.95;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2516,273,0 chrXII 545221 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.41;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3474,393,0 chrXII 545233 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=165;Dels=0.00;FS=2.636;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.171;QD=19.43;ReadPosRankSum=2.420;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3239,366,0 chrXII 545338 . T A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.99;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3407,369,0 chrXII 545416 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.12;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3485,387,0 chrXII 545525 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.77;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3567,384,0 chrXII 545567 . A C 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=130;Dels=0.00;FS=3.031;HaplotypeScore=8.7435;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.782;QD=22.95;ReadPosRankSum=2.373;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3016,336,0 chrXII 545673 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.48;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3132,345,0 chrXII 546249 . A C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.3270;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.04;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3272,366,0 chrXII 546382 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=163;Dels=0.00;FS=9.523;HaplotypeScore=17.3098;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.463;QD=21.61;ReadPosRankSum=2.895;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3522,408,0 chrXII 546414 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.18;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3430,387,0 chrXII 546637 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3998;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.89;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3727,414,0 chrXII 547047 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=3.893;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.485;QD=19.34;ReadPosRankSum=1.704;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2470,279,0 chrXII 547203 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.87;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2832,312,0 chrXII 548297 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.62;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2295,252,0 chrXII 548327 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.45;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1964,219,0 chrXII 548452 . A G 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.547;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.765;QD=23.08;ReadPosRankSum=1.692;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2018,222,0 chrXII 548551 . G A 2625 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.65;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2658,285,0 chrXII 548591 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.64;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2206,237,0 chrXII 548742 . A G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=100;Dels=0.00;FS=7.099;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.107;QD=22.66;ReadPosRankSum=2.400;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2299,255,0 chrXII 548783 . A G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.847;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.054;QD=23.74;ReadPosRankSum=1.625;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2336,261,0 chrXII 548969 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.42;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3541,384,0 chrXII 549155 . G C 4381.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.70;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4381,489,0 chrXII 549297 . A G 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.500;QD=23.31;ReadPosRankSum=1.632;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2457,276,0 chrXII 549472 . T C 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;MQRankSum=-0.875;QD=17.49;ReadPosRankSum=1.696;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1730,189,0 chrXII 549520 . A G 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=98;Dels=0.00;FS=12.181;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;MQRankSum=0.731;QD=8.85;ReadPosRankSum=2.347;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:2,95:98:99:900,102,0 chrXII 549562 . A G 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=5.883;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.987;QD=19.69;ReadPosRankSum=1.695;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1884,213,0 chrXII 549586 . G T 2485 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.44;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2518,273,0 chrXII 549760 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.51;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3620,408,0 chrXII 549838 . C T 3892.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.31;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3892,432,0 chrXII 550084 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2756,303,0 chrXII 550373 . A C 902.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;DP=83;Dels=0.00;FS=3.618;HaplotypeScore=18.1697;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.959;QD=10.88;ReadPosRankSum=0.942;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:7,76:83:9:935,9,0 chrXII 550771 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.65;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3846,423,0 chrXII 550837 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.38;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3592,393,0 chrXII 550842 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.66;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3618,387,0 chrXII 551145 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.34;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2508,276,0 chrXII 551379 . A G 2960 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.95;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2993,336,0 chrXII 551454 . T C 2381 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.84;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2414,276,0 chrXII 551847 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.3002;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.64;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4143,447,0 chrXII 552056 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.84;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2810,318,0 chrXII 552323 . T G 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=182;Dels=0.00;FS=3.008;HaplotypeScore=9.4524;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.209;QD=21.86;ReadPosRankSum=2.423;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3979,468,0 chrXII 552649 . C G 2526 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.05;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2559,294,0 chrXII 552832 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.18;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2722,294,0 chrXII 552850 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3931;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.650;QD=21.93;ReadPosRankSum=2.390;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2730,300,0 chrXII 553063 . A G 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=199;Dels=0.00;FS=7.644;HaplotypeScore=13.6575;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.243;QD=21.38;ReadPosRankSum=2.400;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4254,477,0 chrXII 553358 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.03;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3878,432,0 chrXII 553728 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.5571;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.17;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:4773,534,0 chrXII 554116 . T A 5687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=249;Dels=0.00;FS=3.876;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.565;QD=22.84;ReadPosRankSum=1.718;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5687,621,0 chrXII 554168 . C A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.4765;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.60;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3585,381,0 chrXII 554190 . C A 3033 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.09;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3066,348,0 chrXII 554218 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=153;Dels=0.00;FS=14.144;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.967;QD=18.64;ReadPosRankSum=2.941;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:2885,321,0 chrXII 554679 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.50;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3999,473,0 chrXII 554694 . C G 4094.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.57;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4094,471,0 chrXII 554931 . G A 4747.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.50;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4747,516,0 chrXII 554937 . A G 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=1.111;QD=20.42;ReadPosRankSum=1.716;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4328,492,0 chrXII 555282 . G A 5447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=233;Dels=0.00;FS=3.323;HaplotypeScore=21.1995;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.166;QD=23.38;ReadPosRankSum=1.069;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:5447,566,0 chrXII 555432 . T G 4662.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.68;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4662,546,0 chrXII 555912 . G A 5265.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.3514;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.79;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5265,582,0 chrXII 555957 . G A 5315.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5315,573,0 chrXII 555993 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=177;Dels=0.00;FS=2.948;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.104;QD=22.90;ReadPosRankSum=2.408;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4054,465,0 chrXII 556056 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.256;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.3514;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-1.389;QD=22.64;ReadPosRankSum=-1.466;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4143,434,0 chrXII 556208 . A C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8645;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.007;QD=18.01;ReadPosRankSum=0.766;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3239,369,0 chrXII 556330 . C T 2111 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=16.89;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2144,234,0 chrXII 556347 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.18;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2146,231,0 chrXII 556350 . G A 2147 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=17.60;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2180,234,0 chrXII 556512 . T C 388 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.42;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:48:421,48,0 chrXII 556603 . T C 979 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.88;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,39:41:99:1012,114,0 chrXII 556879 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.29;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3107,345,0 chrXII 557324 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.547;QD=23.03;ReadPosRankSum=1.709;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3454,387,0 chrXII 557420 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=3.384;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.321;QD=22.46;ReadPosRankSum=1.714;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4380,498,0 chrXII 558341 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6146;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.01;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4322,489,0 chrXII 558431 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.29;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4122,450,0 chrXII 558665 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3269,357,0 chrXII 558945 . C T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.48;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3897,423,0 chrXII 559511 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3642,408,0 chrXII 559835 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=17.3876;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.68;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4466,516,0 chrXII 559898 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.44;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3817,426,0 chrXII 560519 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1843,198,0 chrXII 561781 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=115;Dels=0.00;FS=7.034;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.745;QD=22.01;ReadPosRankSum=2.363;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2564,285,0 chrXII 562070 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=3.019;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.372;QD=24.04;ReadPosRankSum=2.363;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3413,381,0 chrXII 562305 . C G 3341.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.86;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3341,375,0 chrXII 562435 . A G 2817 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2850,318,0 chrXII 562667 . G T 2686 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.49;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2719,309,0 chrXII 563186 . T C 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.255;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.044;QD=20.18;ReadPosRankSum=1.637;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2979,339,0 chrXII 563207 . T C 2396 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.13;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2429,273,0 chrXII 563649 . G C 958 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=37.5354;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:991,114,0 chrXII 563731 . C G 993 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.10;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1026,114,0 chrXII 563770 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.89;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1558,174,0 chrXII 563822 . C T 2109 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.20;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2142,237,0 chrXII 564068 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.97;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2123,240,0 chrXII 564107 . A T 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=4.517;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.284;QD=22.64;ReadPosRankSum=1.613;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2659,285,0 chrXII 564127 . T C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.897;QD=21.94;ReadPosRankSum=1.701;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2490,285,0 chrXII 564321 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.30;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2820,309,0 chrXII 564719 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.34;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2811,306,0 chrXII 564747 . A G 2782 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.91;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2815,321,0 chrXII 564759 . G C 2575 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.28;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2608,306,0 chrXII 564824 . G T 2433 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6168;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.53;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2466,270,0 chrXII 564860 . T C 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.624;QD=23.11;ReadPosRankSum=1.697;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2344,258,0 chrXII 565172 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.89;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4157,459,0 chrXII 565184 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.290;QD=18.95;ReadPosRankSum=2.396;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3505,393,0 chrXII 565195 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.2142;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.78;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3305,366,0 chrXII 565274 . G T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.21;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4158,453,0 chrXII 565496 . A G 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.404;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.170;QD=22.62;ReadPosRankSum=1.692;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3914,435,0 chrXII 565505 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.03;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3722,417,0 chrXII 565625 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=161;Dels=0.00;FS=5.251;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.164;QD=19.91;ReadPosRankSum=3.404;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:4,156:161:99:3238,360,0 chrXII 566307 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4217;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.44;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3516,402,0 chrXII 566429 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=108.0164;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=17.45;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2040,234,0 chrXII 566615 . T C 2427 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.11;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2460,273,0 chrXII 567266 . A G 3215 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7368;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.87;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3248,360,0 chrXII 567957 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.87;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2996,327,0 chrXII 568114 . A T 2824 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.73;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2857,324,0 chrXII 568449 . A T 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=120;Dels=0.00;FS=3.027;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.256;QD=20.04;ReadPosRankSum=2.409;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2438,276,0 chrXII 568546 . G A 2485 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.99;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2518,276,0 chrXII 568653 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.56;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3298,375,0 chrXII 568917 . T C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.0860;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.859;QD=23.45;ReadPosRankSum=1.703;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2824,324,0 chrXII 569539 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.76;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2492,276,0 chrXII 569709 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.26;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2871,309,0 chrXII 570142 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.62;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3898,417,0 chrXII 570914 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.9429;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=24.74;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3150,339,0 chrXII 571412 . C T 4824.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.53;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4824,517,0 chrXII 571899 . T C 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.994;QD=21.42;ReadPosRankSum=1.636;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2346,270,0 chrXII 572164 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.466;QD=22.75;ReadPosRankSum=2.374;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2991,339,0 chrXII 572294 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.33;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2229,255,0 chrXII 572662 . T C 4987.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.36;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4987,564,0 chrXII 572946 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3567,396,0 chrXII 573483 . A C 4801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=211;Dels=0.00;FS=5.678;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.962;QD=22.75;ReadPosRankSum=1.699;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,206:211:99:4801,549,0 chrXII 573498 . T A 4809.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.34;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4809,516,0 chrXII 573646 . G A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.7413;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.89;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4715,519,0 chrXII 573671 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.563;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.6299;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.147;QD=17.59;ReadPosRankSum=0.670;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:3993,445,0 chrXII 573804 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=4.277;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.482;QD=21.84;ReadPosRankSum=1.649;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3625,405,0 chrXII 574439 . T C 4293.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.57;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4293,486,0 chrXII 574468 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.86;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3650,417,0 chrXII 574557 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.19;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3965,432,0 chrXII 574584 . C G 3776.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.21;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3776,423,0 chrXII 574726 . G A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.33;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4339,480,0 chrXII 574950 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2709;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.64;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4160,462,0 chrXII 575257 . C A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.38;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3632,393,0 chrXII 575458 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.279;QD=21.39;ReadPosRankSum=1.709;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3273,372,0 chrXII 575473 . T G 3223.06 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.8556;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.40;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3256,381,0 chrXII 575627 . C G 3153 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.74;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3186,372,0 chrXII 576016 . G A 7054.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.06;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:0,334:335:99:7054,777,0 chrXII 576036 . G C 7215.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.15;SB=-4.130e+03 GT:AD:DP:GQ:PL 1/1:0,357:358:99:7215,845,0 chrXII 576111 . A C 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.012;QD=19.42;ReadPosRankSum=1.627;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:4486,492,0 chrXII 576112 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=229;Dels=0.00;FS=3.856;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.245;QD=18.82;ReadPosRankSum=1.640;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:1,225:229:99:4310,474,0 chrXII 576211 . T C 3009 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=15.20;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3042,360,0 chrXII 576339 . A T 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.748;QD=18.65;ReadPosRankSum=1.693;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1674,183,0 chrXII 576551 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1265,141,0 chrXII 576690 . T C 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.452;QD=21.55;ReadPosRankSum=1.694;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2016,225,0 chrXII 577178 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.703;QD=21.61;ReadPosRankSum=1.673;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3781,438,0 chrXII 577535 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3579,408,0 chrXII 577658 . T C 3193 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.15;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3226,381,0 chrXII 578083 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=21.59;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1415,165,0 chrXII 578714 . T C 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.465;QD=22.78;ReadPosRankSum=1.704;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2903,327,0 chrXII 578795 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.441;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.131;QD=21.50;ReadPosRankSum=2.414;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3000,339,0 chrXII 578913 . G A 2270 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.27;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2303,252,0 chrXII 579316 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.90;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4349,492,0 chrXII 579749 . T G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=3.528;HaplotypeScore=14.3040;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.810;QD=22.87;ReadPosRankSum=1.712;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3911,438,0 chrXII 580383 . A G 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.7931;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.109;QD=22.17;ReadPosRankSum=1.717;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5076,576,0 chrXII 581223 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.30;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3798,420,0 chrXII 581502 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.691;QD=21.16;ReadPosRankSum=2.396;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2974,342,0 chrXII 581598 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.505;DP=106;Dels=0.00;FS=6.144;HaplotypeScore=6.4659;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.097;QD=21.25;ReadPosRankSum=2.855;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:3,101:106:99:2286,261,0 chrXII 581754 . T G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=139;Dels=0.00;FS=2.800;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.504;QD=21.94;ReadPosRankSum=2.326;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3082,339,0 chrXII 582520 . A G 4785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.950;DP=232;Dels=0.00;FS=10.607;HaplotypeScore=24.4976;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.108;QD=20.63;ReadPosRankSum=4.125;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:6,223:232:99:4785,543,0 chrXII 583102 . C T 5590.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.52;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5590,606,0 chrXII 583193 . A C 3582.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.18;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3582,420,0 chrXII 583195 . A C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=193;Dels=0.00;FS=9.518;HaplotypeScore=5.0538;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.524;QD=18.70;ReadPosRankSum=2.932;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:3609,423,0 chrXII 583229 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.08;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4719,513,0 chrXII 583277 . T C 6247.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.23;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6247,711,0 chrXII 583565 . G A 4884.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.37;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4884,543,0 chrXII 583697 . T C 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=173;Dels=0.00;FS=2.914;HaplotypeScore=7.5018;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.589;QD=21.02;ReadPosRankSum=2.364;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3637,411,0 chrXII 583763 . T G 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=189;Dels=0.00;FS=3.742;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=1;MQRankSum=1.417;QD=19.72;ReadPosRankSum=1.695;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3727,432,0 chrXII 583874 . G T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.77;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4092,453,0 chrXII 584201 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.188;QD=22.45;ReadPosRankSum=1.692;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3952,438,0 chrXII 584485 . A C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.164;DP=191;Dels=0.00;FS=9.165;HaplotypeScore=20.8899;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.307;QD=21.17;ReadPosRankSum=3.377;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:4,185:191:99:4043,459,0 chrXII 584637 . T A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.1721;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.11;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4533,507,0 chrXII 585083 . T A 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=4.094;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.202;QD=16.05;ReadPosRankSum=1.710;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2505,276,0 chrXII 585086 . T A 2637 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=16.69;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2670,294,0 chrXII 585365 . T C 2843 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.21;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2876,336,0 chrXII 585608 . T G 2125 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=22.14;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2158,234,0 chrXII 585709 . A T 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.592;DP=86;Dels=0.02;FS=8.202;HaplotypeScore=17.7698;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.172;QD=19.40;ReadPosRankSum=3.724;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:5,79:84:99:1701,186,0 chrXII 586011 . A C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=5.887;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.812;QD=23.58;ReadPosRankSum=1.705;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3051,354,0 chrXII 586054 . A G 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.832;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.538;QD=19.50;ReadPosRankSum=1.653;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1749,198,0 chrXII 586069 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.33;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1985,225,0 chrXII 586124 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.66;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2632,288,0 chrXII 586163 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=164;Dels=0.01;FS=10.325;HaplotypeScore=13.5190;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.369;QD=22.37;ReadPosRankSum=2.419;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3668,411,0 chrXII 586255 . T C 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=154;Dels=0.01;FS=5.203;HaplotypeScore=3.6617;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.257;QD=17.86;ReadPosRankSum=3.367;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:2783,315,0 chrXII 586284 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=16.9236;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.16;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3252,357,0 chrXII 586855 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.27;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3980,441,0 chrXII 586885 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.4789;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.51;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4338,477,0 chrXII 587297 . G A 5177.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.5886;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.71;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5177,558,0 chrXII 587519 . T C 3193 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.57;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3226,363,0 chrXII 587932 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.097;QD=23.49;ReadPosRankSum=1.712;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3969,438,0 chrXII 588394 . T C 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.488;HaplotypeScore=8.6454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=19.69;ReadPosRankSum=1.624;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1923,213,0 chrXII 589024 . A G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=3.026;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.315;QD=21.68;ReadPosRankSum=2.401;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2244,255,0 chrXII 589072 . C A 1744 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=22.36;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1777,192,0 chrXII 589093 . C A 1437 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=17.52;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1470,162,0 chrXII 589169 . C A 1525 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.53;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1558,177,0 chrXII 589176 . G C 1463 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=19.00;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1496,171,0 chrXII 589177 . C A 1485 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.04;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1518,168,0 chrXII 589339 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=148;Dels=0.00;FS=2.752;HaplotypeScore=9.7720;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.800;QD=22.59;ReadPosRankSum=2.416;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3343,378,0 chrXII 589563 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.181;QD=20.90;ReadPosRankSum=1.706;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2854,330,0 chrXII 590028 . T C 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.706;QD=22.21;ReadPosRankSum=1.689;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1832,207,0 chrXII 590160 . T C 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=9.3224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.175;QD=22.98;ReadPosRankSum=1.692;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2032,225,0 chrXII 590505 . T A 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=3.358;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.566;QD=25.10;ReadPosRankSum=1.699;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2643,288,0 chrXII 590680 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.656;QD=24.20;ReadPosRankSum=1.653;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3252,363,0 chrXII 590717 . T G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.766;QD=23.76;ReadPosRankSum=1.685;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3493,399,0 chrXII 590856 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6028;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.72;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3093,345,0 chrXII 590898 . G A 2921 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.30;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2954,327,0 chrXII 591438 . A G 2161 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.47;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2194,246,0 chrXII 591465 . A T 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;DP=99;Dels=0.00;FS=2.979;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.281;QD=19.60;ReadPosRankSum=2.151;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1973,213,0 chrXII 591568 . G T 2122 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.34;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2155,231,0 chrXII 591750 . G C 1759 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.55;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1792,204,0 chrXII 591955 . G T 2096 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.29;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2129,231,0 chrXII 592083 . A G 2074 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2107,240,0 chrXII 592198 . T G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.607;QD=20.51;ReadPosRankSum=1.643;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2433,279,0 chrXII 592199 . T A 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.370;QD=21.74;ReadPosRankSum=1.703;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2577,276,0 chrXII 592353 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.19;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2343,267,0 chrXII 592468 . C A 3122 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.20;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3155,339,0 chrXII 592578 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.03;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=19.52;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1595,174,0 chrXII 592686 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.49;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1494,159,0 chrXII 592862 . C A 2178 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=19.62;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2211,243,0 chrXII 592876 . T G 2021 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=17.42;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2054,237,0 chrXII 592887 . T C 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=-0.383;QD=17.34;ReadPosRankSum=1.701;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1992,222,0 chrXII 592907 . C G 2033 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=16.53;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2066,237,0 chrXII 592910 . T C 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=120;Dels=0.00;FS=2.706;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;MQRankSum=1.076;QD=16.66;ReadPosRankSum=2.409;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2032,228,0 chrXII 593059 . G C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=23.77;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3470,381,0 chrXII 593384 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.33;MQ0=6;MQRankSum=0.727;QD=1.78;ReadPosRankSum=0.727;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:4,4:10:6:49,6,0 chrXII 599111 . T G 1419 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=18.19;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1452,165,0 chrXII 599206 . A C 2723 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=24.31;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2756,312,0 chrXII 599232 . T A 2708 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=23.75;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2741,300,0 chrXII 599333 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=23.04;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3236,345,0 chrXII 599383 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.02;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2450,270,0 chrXII 599406 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.13;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2531,276,0 chrXII 599437 . A G 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=126;Dels=0.01;FS=5.404;HaplotypeScore=6.2488;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=1.285;QD=20.99;ReadPosRankSum=2.943;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2678,312,0 chrXII 599482 . G T 3064 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=118.6077;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=22.87;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3097,333,0 chrXII 599529 . A G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=125;Dels=0.02;FS=2.753;HaplotypeScore=39.5804;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.313;QD=19.32;ReadPosRankSum=2.409;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2448,276,0 chrXII 599558 . A C 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=115;Dels=0.00;FS=3.008;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.076;QD=18.27;ReadPosRankSum=2.406;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,111:115:99:2134,252,0 chrXII 599633 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.18;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2362,270,0 chrXII 599677 . T C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.038;QD=19.48;ReadPosRankSum=1.694;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1845,210,0 chrXII 599691 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.29;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1692,198,0 chrXII 599718 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.97;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1968,225,0 chrXII 599905 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.37;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3153,345,0 chrXII 600169 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.44;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2986,324,0 chrXII 600238 . G A 4641.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.43;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4641,504,0 chrXII 600431 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.36;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3466,378,0 chrXII 600445 . T G 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=3.653;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.996;QD=21.75;ReadPosRankSum=1.710;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3501,399,0 chrXII 600547 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3058,330,0 chrXII 600676 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=3.183;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.350;QD=22.82;ReadPosRankSum=1.710;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3537,402,0 chrXII 601080 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.89;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3845,414,0 chrXII 601364 . T C 4715.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.0024;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.30;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4715,525,0 chrXII 601489 . A G 5098.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.56;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5098,576,0 chrXII 601624 . G A 6096.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.0387;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.91;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6096,658,0 chrXII 601825 . C T 5544.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.66;SB=-3.642e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:5544,603,0 chrXII 601834 . G A 5657.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.85;SB=-3.700e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:5657,612,0 chrXII 601888 . A G 6081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=322;Dels=0.00;FS=7.296;HaplotypeScore=23.4219;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=1.073;QD=18.89;ReadPosRankSum=2.419;SB=-3.417e+03 GT:AD:DP:GQ:PL 1/1:2,317:322:99:6081,690,0 chrXII 601934 . C T 7103.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=18.6884;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.52;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:7103,766,0 chrXII 602085 . G C 6268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=286;Dels=0.02;FS=4.724;HaplotypeScore=44.5806;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=-0.006;QD=21.92;ReadPosRankSum=1.250;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,272:281:99:6268,696,0 chrXII 602107 . T C 5929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.551;QD=22.29;ReadPosRankSum=1.241;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,260:266:99:5929,663,0 chrXII 602186 . A G 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.733;DP=168;Dels=0.00;FS=7.456;HaplotypeScore=19.4754;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.657;QD=18.36;ReadPosRankSum=3.770;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:5,162:168:99:3118,357,0 chrXII 602338 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1902;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.44;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3282,360,0 chrXII 602479 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.83;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4178,453,0 chrXII 603057 . A T 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=166;Dels=0.00;FS=2.550;HaplotypeScore=9.3800;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-0.255;QD=20.45;ReadPosRankSum=2.885;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3394,372,0 chrXII 603075 . G T 3170 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.5433;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.45;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3203,348,0 chrXII 603077 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=19.48;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3053,342,0 chrXII 603141 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;QD=13.05;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1730,189,0 chrXII 603154 . C A 1502 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=119.6621;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=10.96;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1535,174,0 chrXII 603180 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;QD=11.57;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1665,183,0 chrXII 603216 . A T 2180 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=17.58;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2213,240,0 chrXII 603313 . C G 2761 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=20.76;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2794,327,0 chrXII 603319 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=-1.119;QD=19.15;ReadPosRankSum=1.652;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2561,306,0 chrXII 603325 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=21.23;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2772,306,0 chrXII 603374 . A T 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3666;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=-0.652;QD=19.89;ReadPosRankSum=1.687;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3096,360,0 chrXII 603584 . T A 2841 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.28;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2874,309,0 chrXII 603656 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=129;Dels=0.00;FS=12.249;HaplotypeScore=12.1085;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.320;QD=21.80;ReadPosRankSum=2.914;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2845,321,0 chrXII 603907 . C A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.17;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4085,438,0 chrXII 604030 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.6374;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.38;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2234,249,0 chrXII 604090 . A T 2779 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.38;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2812,318,0 chrXII 604115 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.776;QD=21.03;ReadPosRankSum=1.702;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2494,285,0 chrXII 604223 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2026;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.83;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3448,375,0 chrXII 604825 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.4709;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.615;QD=21.72;ReadPosRankSum=1.710;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3410,390,0 chrXII 604915 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.10;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3142,342,0 chrXII 604997 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.02;FS=0.000;HaplotypeScore=23.7066;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=23.66;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3502,387,0 chrXII 605057 . T G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=137.3090;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.51;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3678,420,0 chrXII 605168 . G T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.17;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3452,381,0 chrXII 605240 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=179;Dels=0.01;FS=4.698;HaplotypeScore=16.7216;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-0.558;QD=19.28;ReadPosRankSum=1.693;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3451,396,0 chrXII 605250 . A T 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=163;Dels=0.00;FS=2.581;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-0.265;QD=18.76;ReadPosRankSum=2.871;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3091,336,0 chrXII 605365 . T C 2317 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=14.3417;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=6;QD=19.80;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2350,273,0 chrXII 605527 . A G 1950 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=21.67;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1983,228,0 chrXII 605537 . C A 2127 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=22.39;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2160,237,0 chrXII 605614 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=22.64;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1233,138,0 chrXII 605739 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=12.44;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1364,150,0 chrXII 605746 . G T 1310 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;QD=12.24;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1343,144,0 chrXII 605773 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=14.64;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1629,177,0 chrXII 605830 . A G 2374 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8286;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=21.01;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2407,267,0 chrXII 605962 . G A 4466.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=24.81;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4466,486,0 chrXII 605998 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.51;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3785,447,0 chrXII 606088 . C T 4881.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.39;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4881,546,0 chrXII 606112 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.3489;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.40;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4388,501,0 chrXII 606238 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=187;Dels=0.00;FS=6.922;HaplotypeScore=20.7274;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.548;QD=17.85;ReadPosRankSum=2.376;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,166:187:99:3338,372,0 chrXII 606436 . T A 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=239;Dels=0.00;FS=2.432;HaplotypeScore=18.3403;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.324;QD=21.74;ReadPosRankSum=1.794;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:5197,543,0 chrXII 606562 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=186;Dels=0.00;FS=2.751;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.693;QD=20.33;ReadPosRankSum=2.423;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3781,420,0 chrXII 606799 . T C 4328.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.59;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4328,495,0 chrXII 606928 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=4.374;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.882;QD=23.19;ReadPosRankSum=1.711;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3872,429,0 chrXII 607451 . C T 3337.01 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.55;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3337,366,0 chrXII 607457 . T C 3084 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.01;FS=3.024;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=1.636;QD=21.12;ReadPosRankSum=2.382;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3117,345,0 chrXII 607458 . G A 3125 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.40;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3158,345,0 chrXII 607531 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=22.00;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2431,264,0 chrXII 607680 . A G 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-1.049;QD=20.64;ReadPosRankSum=1.707;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2881,336,0 chrXII 607722 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=19.10;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2439,264,0 chrXII 607737 . A G 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.059;QD=17.88;ReadPosRankSum=1.703;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2143,246,0 chrXII 607779 . T C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=3.040;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=-1.230;QD=15.78;ReadPosRankSum=2.407;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1848,216,0 chrXII 607790 . T C 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=116;Dels=0.00;FS=5.907;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;MQRankSum=-2.474;QD=15.31;ReadPosRankSum=2.938;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:3,110:116:99:1809,216,0 chrXII 607791 . T G 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=117;Dels=0.00;FS=2.976;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=-0.641;QD=15.55;ReadPosRankSum=2.366;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1852,216,0 chrXII 607814 . A G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.447;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=0.015;QD=18.06;ReadPosRankSum=1.672;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2110,240,0 chrXII 607922 . C T 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=105;Dels=0.00;FS=6.781;HaplotypeScore=4.4875;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.350;QD=19.93;ReadPosRankSum=2.112;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,100:105:99:2126,231,0 chrXII 607923 . T C 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=6.884;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.523;QD=19.88;ReadPosRankSum=2.304;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2061,231,0 chrXII 607998 . T G 3138 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.06;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3171,369,0 chrXII 608022 . A G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=139;Dels=0.00;FS=6.504;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=1.247;QD=22.33;ReadPosRankSum=2.414;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3137,351,0 chrXII 608102 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.54;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2434,258,0 chrXII 608136 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.97;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2743,303,0 chrXII 608472 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=24.15;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3076,342,0 chrXII 608666 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=19.50;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2899,333,0 chrXII 608673 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.25;MQ0=0;QD=18.74;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2769,315,0 chrXII 608685 . T C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=150;Dels=0.00;FS=7.037;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-1.745;QD=16.15;ReadPosRankSum=2.417;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2456,273,0 chrXII 608695 . T G 2267 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=15.53;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2300,255,0 chrXII 608709 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;MQRankSum=-1.323;QD=13.61;ReadPosRankSum=1.708;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2020,225,0 chrXII 608724 . C T 1963 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=14.87;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1996,228,0 chrXII 608748 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=14.30;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1663,183,0 chrXII 609039 . T C 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=9.219;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.289;QD=19.82;ReadPosRankSum=2.357;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2649,300,0 chrXII 609052 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.65;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2999,324,0 chrXII 609087 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.7816;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.24;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3625,393,0 chrXII 609126 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.7061;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.78;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3177,339,0 chrXII 609194 . T G 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.058;QD=20.27;ReadPosRankSum=2.380;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2202,261,0 chrXII 609213 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.50;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2598,294,0 chrXII 609380 . G A 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.445;QD=22.95;ReadPosRankSum=0.960;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4039,428,0 chrXII 609401 . A T 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=4.274;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.822;QD=23.72;ReadPosRankSum=1.715;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4696,504,0 chrXII 609555 . A G 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=214;Dels=0.00;FS=3.573;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.194;QD=21.76;ReadPosRankSum=1.716;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4656,513,0 chrXII 609559 . A G 4494.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.10;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4494,510,0 chrXII 609572 . A G 4963.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.39;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4963,546,0 chrXII 609824 . G A 5196.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.83;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5196,561,0 chrXII 609899 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=216;Dels=0.00;FS=7.937;HaplotypeScore=21.9413;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.428;QD=22.69;ReadPosRankSum=3.734;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:5,208:216:99:4900,549,0 chrXII 610061 . T C 6054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=282;Dels=0.00;FS=6.418;HaplotypeScore=14.3408;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.495;QD=21.47;ReadPosRankSum=2.406;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:2,278:282:99:6054,693,0 chrXII 610216 . A G 5349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=239;Dels=0.00;FS=3.943;HaplotypeScore=22.9392;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.480;QD=22.38;ReadPosRankSum=0.801;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5349,603,0 chrXII 610430 . A G 4971.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.1065;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.09;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4971,582,0 chrXII 610544 . C T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.13;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3539,387,0 chrXII 610547 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.38;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3391,378,0 chrXII 610616 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.4343;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.07;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3602,405,0 chrXII 610619 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.17;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3853,414,0 chrXII 610829 . C T 5568.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=26.4747;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.63;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5568,603,0 chrXII 610920 . T C 5990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=270;Dels=0.00;FS=2.893;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.880;QD=22.19;ReadPosRankSum=2.394;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:2,265:270:99:5990,675,0 chrXII 610934 . T C 5390.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=9.1904;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.49;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5390,624,0 chrXII 611078 . G A 5649.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.08;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5649,636,0 chrXII 611179 . T C 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=243;Dels=0.00;FS=6.072;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.636;QD=19.42;ReadPosRankSum=2.962;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:3,237:243:99:4719,549,0 chrXII 611203 . T C 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.915;DP=257;Dels=0.00;FS=15.085;HaplotypeScore=14.3151;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.464;QD=18.74;ReadPosRankSum=4.154;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:6,251:257:99:4816,540,0 chrXII 611744 . A G 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=4.554;HaplotypeScore=7.1710;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.522;QD=21.15;ReadPosRankSum=1.684;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4569,537,0 chrXII 611769 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=18.17;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4143,447,0 chrXII 611779 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.248;DP=238;Dels=0.00;FS=19.160;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-1.373;QD=16.12;ReadPosRankSum=3.241;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:4,234:238:99:3836,455,0 chrXII 611787 . T C 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=235;Dels=0.00;FS=5.069;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-2.652;QD=16.23;ReadPosRankSum=3.386;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:4,231:235:99:3813,429,0 chrXII 611812 . T A 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=-0.816;QD=14.47;ReadPosRankSum=1.699;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:3043,342,0 chrXII 611864 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.8611;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=17.83;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4261,465,0 chrXII 611994 . A G 4420.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=21.46;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4420,507,0 chrXII 612165 . A G 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240;DP=110;Dels=0.00;FS=1.180;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=48.17;MQ0=0;MQRankSum=2.785;QD=0.65;ReadPosRankSum=-5.460;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:98,12:110:27:101,0,27 chrXII 612167 . A G 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=48.32;MQ0=0;MQRankSum=-1.613;QD=0.43;ReadPosRankSum=4.861;SB=-9.680e+02 GT:AD:DP:GQ:PL 0/1:9,100:109:53:77,0,53 chrXII 612183 . A G 1680 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=17.14;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1713,198,0 chrXII 612202 . A G 1417 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=15.92;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1450,168,0 chrXII 612238 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=17.59;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1423,162,0 chrXII 612260 . G T 1494 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=18.22;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1527,168,0 chrXII 612265 . A C 1455 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=17.74;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1488,168,0 chrXII 612306 . T C 1888 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=18.88;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1921,225,0 chrXII 612349 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=21.13;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2083,231,0 chrXII 612358 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=21.06;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2160,246,0 chrXII 612475 . T G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.208;QD=17.73;ReadPosRankSum=1.677;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2267,258,0 chrXII 612477 . G T 2281 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=18.40;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2314,255,0 chrXII 612516 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=157;Dels=0.00;FS=2.579;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;MQRankSum=-1.071;QD=16.39;ReadPosRankSum=2.955;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:2607,294,0 chrXII 612537 . A C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=-1.545;QD=16.45;ReadPosRankSum=-1.151;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2780,300,0 chrXII 612562 . T G 3368.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=18.61;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3368,384,0 chrXII 612564 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=182;Dels=0.00;FS=2.573;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.055;QD=18.62;ReadPosRankSum=2.939;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3389,390,0 chrXII 612630 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.43;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4328,483,0 chrXII 612708 . T C 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.691;DP=238;Dels=0.00;FS=5.973;HaplotypeScore=17.5089;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.386;QD=18.95;ReadPosRankSum=2.953;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:3,234:238:99:4510,531,0 chrXII 612784 . G T 5015.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.7007;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.90;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5015,540,0 chrXII 613011 . C T 5042.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.51;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5042,552,0 chrXII 613059 . T C 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=222;Dels=0.00;FS=2.969;HaplotypeScore=9.7482;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-1.601;QD=19.89;ReadPosRankSum=2.338;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:4416,498,0 chrXII 613065 . C T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.45;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4298,483,0 chrXII 613218 . A G 4855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.526;QD=21.58;ReadPosRankSum=1.717;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4855,558,0 chrXII 613236 . C T 5117.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.2396;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=21.96;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5117,555,0 chrXII 613380 . A C 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=219;Dels=0.00;FS=9.213;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.470;QD=21.20;ReadPosRankSum=2.940;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:4643,516,0 chrXII 613464 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=205;Dels=0.00;FS=6.434;HaplotypeScore=7.0756;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.545;QD=19.00;ReadPosRankSum=2.390;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:3894,453,0 chrXII 613479 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.94;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3598,396,0 chrXII 613482 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=188;Dels=0.00;FS=10.901;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=1.187;QD=17.62;ReadPosRankSum=2.909;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:3312,387,0 chrXII 613500 . T C 2957 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.2913;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=17.09;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2990,354,0 chrXII 613662 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8609;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=21.47;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4123,465,0 chrXII 613688 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=3.967;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;MQRankSum=-1.732;QD=22.38;ReadPosRankSum=1.712;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3850,426,0 chrXII 613752 . T C 3076 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.9600;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=18.42;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3109,369,0 chrXII 613767 . T C 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.634;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=0.210;QD=17.29;ReadPosRankSum=1.710;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2748,312,0 chrXII 613771 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=15.97;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2589,294,0 chrXII 613786 . A G 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;MQRankSum=-0.557;QD=15.24;ReadPosRankSum=1.711;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2593,300,0 chrXII 613846 . G A 2578 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;MQRankSum=-1.732;QD=13.86;ReadPosRankSum=1.713;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:2611,282,0 chrXII 613848 . C G 2537 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=13.71;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:2570,288,0 chrXII 613851 . T C 2658 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=13.42;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:2691,297,0 chrXII 613857 . A G 2581 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;MQRankSum=1.488;QD=12.90;ReadPosRankSum=1.697;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:2614,294,0 chrXII 613864 . C A 2366 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=13.44;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2399,261,0 chrXII 613866 . C T 2414 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=13.72;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2447,264,0 chrXII 613867 . C T 2391 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=13.51;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2424,264,0 chrXII 613890 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=15.64;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3146,357,0 chrXII 614136 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=22.72;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2169,234,0 chrXII 614163 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.45;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1599,174,0 chrXII 614178 . G C 1222 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.07;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1255,141,0 chrXII 614232 . A G 786 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.12;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:819,90,0 chrXII 614286 . C A 586 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.90;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:69:619,69,0 chrXII 614304 . A G 473 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.89;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:506,57,0 chrXII 614411 . A T 2023 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=26.97;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2056,219,0 chrXII 614456 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=23.48;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1653,177,0 chrXII 614564 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=2.699;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.117;QD=21.34;ReadPosRankSum=2.396;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2957,333,0 chrXII 614572 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=21.01;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2932,318,0 chrXII 614614 . C A 2637 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.39;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2670,294,0 chrXII 614675 . T C 2048 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=16.79;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2081,231,0 chrXII 614686 . G C 1790 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.5241;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=15.04;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:1823,201,0 chrXII 614708 . G A 1719 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3149;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=14.45;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1752,186,0 chrXII 614710 . G A 1685 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5743;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=14.40;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:1718,183,0 chrXII 614712 . C T 1650 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6979;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=14.10;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1683,180,0 chrXII 614751 . T C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=4.271;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.119;QD=18.10;ReadPosRankSum=1.679;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2404,267,0 chrXII 616056 . C T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.15;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3634,405,0 chrXII 616065 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.46;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3390,390,0 chrXII 616104 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.69;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2927,315,0 chrXII 616122 . A G 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.342;QD=16.79;ReadPosRankSum=1.638;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2518,297,0 chrXII 616225 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=4.852;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.599;QD=20.92;ReadPosRankSum=1.711;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3389,384,0 chrXII 616330 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.033;QD=22.93;ReadPosRankSum=1.499;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2762,309,0 chrXII 616917 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2891,315,0 chrXII 617208 . G T 4412.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2970;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.79;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4412,483,0 chrXII 617274 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.67;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4190,456,0 chrXII 617302 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.18;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3824,417,0 chrXII 617376 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.27;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3048,357,0 chrXII 618279 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.262;QD=22.28;ReadPosRankSum=1.707;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3130,351,0 chrXII 618297 . T A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.00;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3432,372,0 chrXII 618795 . T C 2794 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2160;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.00;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2827,312,0 chrXII 618891 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.34;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3485,387,0 chrXII 619230 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.18;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4521,507,0 chrXII 619476 . T C 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=189;Dels=0.00;FS=5.822;HaplotypeScore=18.3298;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.887;QD=21.96;ReadPosRankSum=2.898;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4150,480,0 chrXII 619650 . A G 4624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=221;Dels=0.00;FS=8.025;HaplotypeScore=25.3415;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.717;QD=20.92;ReadPosRankSum=3.349;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:4,216:221:99:4624,513,0 chrXII 619731 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.86;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3657,402,0 chrXII 619752 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.318;QD=23.30;ReadPosRankSum=-1.013;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3705,402,0 chrXII 619917 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.115;DP=152;Dels=0.00;FS=4.357;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.501;QD=23.96;ReadPosRankSum=-1.455;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3642,382,0 chrXII 619947 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.313;DP=162;Dels=0.00;FS=9.224;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.564;QD=21.93;ReadPosRankSum=1.793;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3553,383,0 chrXII 619971 . T G 3399.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.36;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3399,393,0 chrXII 620772 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3487,387,0 chrXII 620966 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.05;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3559,384,0 chrXII 621177 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.13;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3700,417,0 chrXII 621288 . G C 3023 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3056,348,0 chrXII 621936 . G A 2424 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2457,267,0 chrXII 622313 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4312,468,0 chrXII 622969 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.39;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1483,165,0 chrXII 622999 . A G 1316 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.23;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1349,156,0 chrXII 623416 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.36;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2515,273,0 chrXII 623494 . G A 2714 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.90;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2747,294,0 chrXII 623512 . C T 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.338;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.028;QD=21.91;ReadPosRankSum=-1.141;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2728,276,0 chrXII 623566 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=3.086;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.493;QD=20.79;ReadPosRankSum=1.672;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2486,282,0 chrXII 623758 . A G 4935.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.43;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4935,581,0 chrXII 623971 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=6.341;HaplotypeScore=18.2001;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.568;QD=18.18;ReadPosRankSum=1.699;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:3872,435,0 chrXII 624838 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.66;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3422,387,0 chrXII 626407 . T G 1248 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=15.80;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1281,147,0 chrXII 626422 . T A 955 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=14.69;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:988,111,0 chrXII 626739 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=3.492;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.324;QD=19.91;ReadPosRankSum=1.716;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4381,483,0 chrXII 626891 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=175;Dels=0.00;FS=2.593;HaplotypeScore=12.2614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.042;QD=21.30;ReadPosRankSum=2.309;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3728,414,0 chrXII 627007 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.055;DP=204;Dels=0.00;FS=6.086;HaplotypeScore=12.2409;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.645;QD=22.34;ReadPosRankSum=2.235;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:3,198:204:99:4558,493,0 chrXII 627274 . T A 4276.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.76;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4276,465,0 chrXII 627361 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.20;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3985,432,0 chrXII 627370 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.76;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3636,411,0 chrXII 627543 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=166;Dels=0.00;FS=9.771;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.368;QD=21.37;ReadPosRankSum=2.884;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3548,399,0 chrXII 627774 . A G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=3.590;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.325;QD=21.37;ReadPosRankSum=1.667;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3441,399,0 chrXII 628005 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.21;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3024,333,0 chrXII 628095 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.40;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3107,336,0 chrXII 628185 . A G 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.561;QD=22.14;ReadPosRankSum=2.368;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2026,234,0 chrXII 628215 . G T 1405 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.62;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1438,162,0 chrXII 628353 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=21.04;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1022,111,0 chrXII 628513 . G A 511 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=19.65;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:60:544,60,0 chrXII 628793 . T C 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.814;QD=22.81;ReadPosRankSum=1.690;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1926,213,0 chrXII 629668 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3196,360,0 chrXII 629701 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2708,303,0 chrXII 629914 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2672,303,0 chrXII 629974 . A G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.291;QD=20.76;ReadPosRankSum=1.701;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2400,276,0 chrXII 630259 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.4100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3275,357,0 chrXII 630314 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3905;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.33;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3285,363,0 chrXII 630868 . G A 4924.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.08;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4924,543,0 chrXII 630956 . T A 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=3.468;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.091;QD=20.27;ReadPosRankSum=1.680;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4053,441,0 chrXII 631868 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.36;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4003,435,0 chrXII 632065 . T A 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=3.623;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.641;QD=19.40;ReadPosRankSum=1.687;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2982,333,0 chrXII 632381 . A C 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=184;Dels=0.00;FS=2.965;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.221;QD=21.64;ReadPosRankSum=2.396;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:3981,447,0 chrXII 632513 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.76;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4301,465,0 chrXII 633127 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.11;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3010,342,0 chrXII 633163 . G A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.93;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4068,447,0 chrXII 633316 . G A 4899.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.13;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4899,537,0 chrXII 633355 . T C 4931.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=4.3661;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.72;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4931,558,0 chrXII 633359 . C T 5137.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.2868;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.88;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5137,558,0 chrXII 634065 . T C 1671 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1704,195,0 chrXII 634219 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.70;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2167,228,0 chrXII 634488 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.96;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3239,357,0 chrXII 634506 . A C 2828 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.26;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2861,321,0 chrXII 634732 . A T 3108 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.37;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3141,336,0 chrXII 635079 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3212,351,0 chrXII 635382 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3430,387,0 chrXII 635655 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=17.4017;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.46;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3204,360,0 chrXII 636174 . C A 1584 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.14;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1617,177,0 chrXII 637236 . A T 6489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=282;Dels=0.00;FS=3.880;HaplotypeScore=25.0645;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.512;QD=23.01;ReadPosRankSum=1.695;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:1,280:282:99:6489,717,0 chrXII 637347 . G T 7046.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=14.1161;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.66;SB=-3.866e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:7046,774,0 chrXII 637970 . A G 5447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.5541;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.661;QD=22.05;ReadPosRankSum=1.676;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:5447,612,0 chrXII 638303 . C T 5799.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=19.5610;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5799,639,0 chrXII 638411 . G A 5063.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.4894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5063,564,0 chrXII 638924 . T G 4887.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.5546;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.53;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4887,575,0 chrXII 640928 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.04;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3163,345,0 chrXII 641406 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.214;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.849;QD=22.67;ReadPosRankSum=1.709;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3468,384,0 chrXII 641415 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.56;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3542,384,0 chrXII 641496 . G A 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.142;DP=135;Dels=0.00;FS=4.676;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.834;QD=18.00;ReadPosRankSum=0.988;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2463,260,0 chrXII 641499 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.66;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2590,282,0 chrXII 641592 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.96;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4109,474,0 chrXII 641676 . C T 5001.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.64;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5001,558,0 chrXII 641830 . G C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.4140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3915,447,0 chrXII 642188 . T A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.66;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3310,360,0 chrXII 642432 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.2993;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.406;QD=22.06;ReadPosRankSum=1.941;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:2085,234,0 chrXII 642537 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.84;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3314,369,0 chrXII 642815 . A G 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=199;Dels=0.00;FS=4.002;HaplotypeScore=11.7485;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.265;QD=22.32;ReadPosRankSum=1.661;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,195:199:99:4442,522,0 chrXII 644045 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.2099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.102;QD=21.33;ReadPosRankSum=1.714;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3988,462,0 chrXII 644869 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.22;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3622,402,0 chrXII 644974 . A G 1846 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=17.42;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1879,219,0 chrXII 644975 . G A 1897 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=18.24;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1930,216,0 chrXII 644984 . C T 1711 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=18.20;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1744,195,0 chrXII 644985 . A T 1648 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=17.53;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1681,195,0 chrXII 645013 . A T 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=-0.292;QD=17.25;ReadPosRankSum=1.698;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1775,192,0 chrXII 645044 . C A 2133 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.22;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2166,237,0 chrXII 645078 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.45;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2972,321,0 chrXII 645169 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=3.511;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.051;QD=19.32;ReadPosRankSum=1.664;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1984,225,0 chrXII 645183 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=19.81;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1717,189,0 chrXII 645191 . G T 1472 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=18.63;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1505,168,0 chrXII 645400 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.38;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3010,333,0 chrXII 645452 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4343;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.38;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3759,417,0 chrXII 645496 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.37;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3667,426,0 chrXII 645659 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=2.987;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.462;QD=21.17;ReadPosRankSum=2.371;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3366,387,0 chrXII 645778 . C G 3120 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=17.93;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3153,360,0 chrXII 646159 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.2519;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.80;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4263,477,0 chrXII 646367 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.1541;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.672;QD=20.27;ReadPosRankSum=1.692;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3587,420,0 chrXII 646705 . A G 6440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=292;Dels=0.00;FS=2.744;HaplotypeScore=21.6728;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.409;QD=22.05;ReadPosRankSum=2.382;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:2,289:292:99:6440,729,0 chrXII 646825 . T C 5708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.7055;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.424;QD=23.02;ReadPosRankSum=1.718;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5708,648,0 chrXII 646900 . T C 4804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.7051;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.382;QD=20.71;ReadPosRankSum=1.717;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4804,555,0 chrXII 647095 . A G 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.8688;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.474;QD=21.72;ReadPosRankSum=1.715;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4387,495,0 chrXII 647245 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.34;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3594,393,0 chrXII 647338 . G T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.49;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4447,486,0 chrXII 647751 . C G 4315.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=16.47;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:4315,498,0 chrXII 647752 . T C 4525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-1.586;QD=17.34;ReadPosRankSum=1.706;SB=-3.427e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:4525,501,0 chrXII 647778 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=13.81;SB=-3.086e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:3771,408,0 chrXII 647788 . T C 3161 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=11.29;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:3194,381,0 chrXII 647803 . A G 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=261;Dels=0.00;FS=2.697;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=-0.465;QD=11.64;ReadPosRankSum=2.431;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:3071,345,0 chrXII 648070 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.12;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3451,369,0 chrXII 648118 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=2.839;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.589;QD=23.09;ReadPosRankSum=2.393;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3995,444,0 chrXII 648559 . C T 4879.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.15;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4879,528,0 chrXII 648642 . C T 4985.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.3462;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.51;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4985,543,0 chrXII 648649 . C T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.08;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:4940,546,0 chrXII 648678 . G C 5023.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.3598;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.93;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5023,570,0 chrXII 648723 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=192;Dels=0.00;FS=4.037;HaplotypeScore=12.2328;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.440;QD=21.71;ReadPosRankSum=1.677;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4168,465,0 chrXII 648853 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.982;QD=20.77;ReadPosRankSum=1.714;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4051,474,0 chrXII 649118 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.92;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4062,453,0 chrXII 649258 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.76;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4610,510,0 chrXII 649310 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.6721;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.46;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4244,477,0 chrXII 649498 . T C 5766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=253;Dels=0.00;FS=2.770;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.920;QD=22.79;ReadPosRankSum=2.411;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:5766,663,0 chrXII 649777 . A G 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=2.931;HaplotypeScore=10.2983;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.526;QD=22.40;ReadPosRankSum=2.425;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4569,513,0 chrXII 649837 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=165;Dels=0.00;FS=10.369;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.884;QD=23.33;ReadPosRankSum=2.909;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3850,426,0 chrXII 649939 . G A 4800.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=17.4553;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.76;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4800,516,0 chrXII 650002 . C T 4726.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.7024;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=25.14;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4726,510,0 chrXII 650032 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=24.54;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4099,453,0 chrXII 650056 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=24.57;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3759,417,0 chrXII 650087 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=23.67;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3693,411,0 chrXII 650104 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=23.52;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3598,390,0 chrXII 650191 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=7.671;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.496;QD=22.22;ReadPosRankSum=2.421;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3822,429,0 chrXII 650259 . G T 2339 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=13.21;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2372,264,0 chrXII 650264 . A C 2168 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=11.78;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:2201,255,0 chrXII 650274 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=195;Dels=0.00;FS=13.592;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;MQRankSum=-2.570;QD=11.64;ReadPosRankSum=2.964;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:2303,261,0 chrXII 650329 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=19.03;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3596,390,0 chrXII 650356 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=23.06;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3528,387,0 chrXII 650368 . T G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=3.035;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=1.554;QD=20.72;ReadPosRankSum=2.401;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3161,366,0 chrXII 650416 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=3.430;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;MQRankSum=-1.003;QD=19.69;ReadPosRankSum=1.709;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3026,365,0 chrXII 650435 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.290;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.7111;MLEAC=2;MLEAF=1.00;MQ=32.35;MQ0=0;MQRankSum=-1.779;QD=19.87;ReadPosRankSum=1.392;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3298,354,0 chrXII 650443 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.028;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;MQRankSum=-2.050;QD=19.27;ReadPosRankSum=1.428;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:3508,381,0 chrXII 650451 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.182;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;MQRankSum=-1.410;QD=18.60;ReadPosRankSum=-0.432;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3646,405,0 chrXII 650545 . G T 3072 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=19.82;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,149:155:99:3105,351,0 chrXII 650575 . A G 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;MQRankSum=-0.755;QD=18.32;ReadPosRankSum=1.703;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2177,255,0 chrXII 650599 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;QD=16.69;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1769,213,0 chrXII 650609 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;QD=14.93;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1272,156,0 chrXII 650617 . C T 1078 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=0;QD=14.77;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1111,138,0 chrXII 650623 . A G 1059 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;MQRankSum=-0.445;QD=15.13;ReadPosRankSum=1.683;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1092,137,0 chrXII 650626 . C T 1220 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=16.27;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1253,153,0 chrXII 650632 . C T 1298 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=17.08;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1331,162,0 chrXII 650686 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=23.26;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1638,177,0 chrXII 650729 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=21.36;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1592,174,0 chrXII 650755 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=20.78;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1176,129,0 chrXII 650767 . C T 852 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=20.78;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:885,99,0 chrXII 650985 . T A 33.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.86;MQ0=39;MQRankSum=1.589;QD=0.70;ReadPosRankSum=-1.589;SB=0.352 GT:AD:DP:GQ:PL 0/1:41,6:47:16:63,0,16 chrXII 651115 . C T 181.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.99;MQ0=20;MQRankSum=2.920;QD=4.76;ReadPosRankSum=1.434;SB=-6.499e-03 GT:AD:DP:GQ:PL 0/1:18,19:38:62:211,0,62 chrXII 651138 . C A 355 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=4;QD=16.14;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:42:388,42,0 chrXII 651140 . A T 343 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=4;QD=15.59;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:2,20:22:42:376,42,0 chrXII 651141 . C T 312 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=5;QD=13.00;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:42:345,42,0 chrXII 651147 . C T 487.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;DP=85;Dels=0.00;FS=14.962;HaplotypeScore=36.1361;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=6;MQRankSum=5.078;QD=5.73;ReadPosRankSum=-0.590;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:23,62:85:99:517,0,163 chrXII 651235 . C T 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.551;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=19;MQRankSum=0.382;QD=1.21;ReadPosRankSum=-2.085;SB=-6.302e-03 GT:AD:DP:GQ:PL 0/1:28,47:76:99:122,0,142 chrXII 656735 . A C 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.369;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.7486;MLEAC=2;MLEAF=1.00;MQ=8.79;MQ0=78;MQRankSum=3.847;QD=0.41;ReadPosRankSum=5.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,95:118:9:80,9,0 chrXII 656753 . G A 84.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=0;QD=14.09;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:117,12,0 chrXII 656761 . T C 94.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;QD=13.50;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:127,12,0 chrXII 656815 . G C 101.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;QD=14.47;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:134,15,0 chrXII 658197 . G A 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.45;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:123,15,0 chrXII 658198 . T C 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.45;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:123,15,0 chrXII 658203 . A T 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=4.10;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:123,15,0 chrXII 658205 . C G 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=6.32;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:21:172,21,0 chrXII 658216 . T C 189.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;MQRankSum=-0.501;QD=5.40;ReadPosRankSum=2.799;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:3,32:35:27:222,27,0 chrXII 658221 . T C 253 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=0.127;QD=6.17;ReadPosRankSum=1.648;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:1,40:41:36:286,36,0 chrXII 658227 . G C 309 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=7.19;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:39:342,39,0 chrXII 658232 . A G 364 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=7.74;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:45:397,45,0 chrXII 658236 . G A 362 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=7.70;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:45:395,45,0 chrXII 658239 . C T 371 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=7.89;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:45:404,45,0 chrXII 658240 . T C 361 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=0.722;QD=7.52;ReadPosRankSum=1.660;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,47:48:45:394,45,0 chrXII 658251 . C T 426 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=5.84;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:51:459,51,0 chrXII 658253 . C A 429 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=5.88;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:51:462,51,0 chrXII 658255 . T C 406 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=5.56;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:51:439,51,0 chrXII 658256 . T A 421 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=5.77;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:51:454,51,0 chrXII 658264 . T C 403 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;MQRankSum=-1.121;QD=4.53;ReadPosRankSum=2.394;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:2,87:89:51:436,51,0 chrXII 658269 . A G 427 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=4.80;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:54:460,54,0 chrXII 658270 . A G 434 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=4.88;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:54:467,54,0 chrXII 658279 . A G 466 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=4.48;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,104:104:60:499,60,0 chrXII 658313 . G A 415 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=4.72;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:51:448,51,0 chrXII 658314 . G C 425 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=4.83;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:51:458,51,0 chrXII 658320 . G C 404 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=4.59;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:48:437,48,0 chrXII 658323 . C T 409 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=4.49;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:48:442,48,0 chrXII 658329 . A G 413 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=5.04;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:48:446,48,0 chrXII 658362 . C A 405 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.33;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:48:438,48,0 chrXII 658386 . G A 337 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=5.44;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:42:370,42,0 chrXII 658388 . A G 303 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=4.89;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:42:336,42,0 chrXII 658403 . G A 694 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=8.78;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:81:727,81,0 chrXII 658419 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=12.18;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1251,144,0 chrXII 658457 . G T 3009 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=18.24;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3042,330,0 chrXII 658577 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.389;QD=21.54;ReadPosRankSum=1.685;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3221,363,0 chrXII 658599 . G T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=22.75;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3481,375,0 chrXII 658623 . G T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.4705;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=21.85;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3693,399,0 chrXII 659350 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2382,267,0 chrXII 660046 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.015;QD=25.13;ReadPosRankSum=1.672;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2948,324,0 chrXII 660079 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.15;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3526,381,0 chrXII 660278 . C A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.91;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3666,414,0 chrXII 660622 . A T 2934 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.42;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2967,327,0 chrXII 660628 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.88;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3118,351,0 chrXII 660879 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=3.024;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.039;QD=22.49;ReadPosRankSum=2.387;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3554,414,0 chrXII 660916 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.0142;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.07;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3310,366,0 chrXII 661240 . G A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.1084;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.83;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4649,507,0 chrXII 661493 . A C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.460;QD=22.44;ReadPosRankSum=1.707;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3174,363,0 chrXII 661927 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.02;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4012,450,0 chrXII 661969 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.4461;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.24;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3788,411,0 chrXII 662311 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=174;Dels=0.00;FS=3.688;HaplotypeScore=9.8287;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.492;QD=22.24;ReadPosRankSum=1.712;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3869,438,0 chrXII 662548 . G A 5107.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.1717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5107,549,0 chrXII 662983 . A G 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.201;QD=22.84;ReadPosRankSum=1.623;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2248,249,0 chrXII 663124 . A G 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.424;QD=21.57;ReadPosRankSum=1.697;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2147,240,0 chrXII 663342 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.43;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4054,468,0 chrXII 663890 . T C 4448.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.6841;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=20.69;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4448,495,0 chrXII 665969 . A G 6725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=293;Dels=0.00;FS=6.494;HaplotypeScore=10.5802;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.842;QD=22.95;ReadPosRankSum=2.391;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:2,291:293:99:6725,785,0 chrXII 666764 . T C 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=220;Dels=0.00;FS=9.012;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.258;QD=23.00;ReadPosRankSum=3.365;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:4,216:220:99:5059,576,0 chrXII 667250 . C T 3181 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.64;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3214,357,0 chrXII 667847 . C G 3047 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.01;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3080,342,0 chrXII 668992 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.95;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1939,219,0 chrXII 669004 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.31;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1695,186,0 chrXII 669276 . G C 1649 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=23.23;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1682,189,0 chrXII 669293 . G C 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=80;Dels=0.00;FS=4.663;HaplotypeScore=2.5130;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.987;QD=18.92;ReadPosRankSum=0.899;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1547,180,0 chrXII 669309 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=20.63;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1766,192,0 chrXII 669321 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.17;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1797,207,0 chrXII 669526 . T C 3185 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.59;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3218,360,0 chrXII 669673 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=20.03;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2898,318,0 chrXII 669680 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=18.23;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2585,297,0 chrXII 669692 . T C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=9.543;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.908;QD=18.89;ReadPosRankSum=2.413;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2564,300,0 chrXII 669860 . C G 164.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.955;DP=109;Dels=0.00;FS=8.602;HaplotypeScore=21.5053;MLEAC=1;MLEAF=0.500;MQ=33.98;MQ0=0;MQRankSum=1.038;QD=1.51;ReadPosRankSum=-6.278;SB=-1.322e+01 GT:AD:DP:GQ:PL 0/1:85,21:109:10:194,0,10 chrXII 669881 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=73.8634;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=11.13;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1246,135,0 chrXII 669920 . G T 1784 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.3447;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=14.99;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1817,198,0 chrXII 669973 . G T 2772 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.49;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2805,309,0 chrXII 669989 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.62;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2996,324,0 chrXII 670014 . A C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.309;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8726;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.103;QD=18.49;ReadPosRankSum=1.278;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3139,333,0 chrXII 670460 . C G 1950 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1983,222,0 chrXII 670631 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1691,186,0 chrXII 671310 . A G 2285 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.40;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2318,258,0 chrXII 671563 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.080;QD=20.70;ReadPosRankSum=2.376;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3477,387,0 chrXII 671569 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.8426;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.88;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3598,396,0 chrXII 671664 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.240;QD=20.80;ReadPosRankSum=1.697;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4119,462,0 chrXII 671669 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.56;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4071,453,0 chrXII 671705 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.9516;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.32;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3982,441,0 chrXII 671776 . G T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.4810;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.39;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4523,510,0 chrXII 671956 . A C 3350.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.7402;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.04;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3350,396,0 chrXII 672233 . C G 3786.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.81;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3786,438,0 chrXII 672637 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=117;Dels=0.00;FS=2.976;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.389;QD=23.07;ReadPosRankSum=2.366;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2732,306,0 chrXII 672683 . T G 2008 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.36;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2041,240,0 chrXII 672778 . C A 2563 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.13;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2596,288,0 chrXII 672799 . A G 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.5271;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.943;QD=23.14;ReadPosRankSum=1.698;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2370,276,0 chrXII 672895 . T C 2237 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=97.1691;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.34;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2270,261,0 chrXII 672956 . A G 1435 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.08;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1468,168,0 chrXII 673072 . G A 2700 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.95;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2733,297,0 chrXII 673080 . T C 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.079;QD=19.86;ReadPosRankSum=1.682;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2774,315,0 chrXII 673526 . A G 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=67;Dels=0.00;FS=6.771;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.350;QD=22.76;ReadPosRankSum=2.192;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1558,171,0 chrXII 673638 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.89;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2069,231,0 chrXII 673680 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.95;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2118,240,0 chrXII 673731 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.39;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2448,264,0 chrXII 674079 . A C 304.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.017;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=87.4256;MLEAC=1;MLEAF=0.500;MQ=53.82;MQ0=0;MQRankSum=2.487;QD=3.11;ReadPosRankSum=-3.816;SB=-1.345e+02 GT:AD:DP:GQ:PL 0/1:73,24:97:1:333,0,1 chrXII 674781 . T C 1558 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1591,183,0 chrXII 674845 . T C 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=95;Dels=0.00;FS=2.533;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.108;QD=21.66;ReadPosRankSum=2.775;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:2091,237,0 chrXII 675407 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.80;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2723,309,0 chrXII 675862 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.06;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2431,273,0 chrXII 676076 . G C 3647.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.8242;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.23;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3647,405,0 chrXII 676167 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.15;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3196,345,0 chrXII 676195 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.51;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2995,324,0 chrXII 676573 . C A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.05;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3559,399,0 chrXII 676729 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.95;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3292,363,0 chrXII 676730 . A G 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=3.549;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.861;QD=19.07;ReadPosRankSum=1.690;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3160,363,0 chrXII 676756 . A C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=177;Dels=0.00;FS=8.161;HaplotypeScore=10.0227;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=1.328;QD=18.88;ReadPosRankSum=2.867;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3341,372,0 chrXII 677005 . A G 4251.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.8153;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.37;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4251,468,0 chrXII 677014 . A C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=7.436;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.821;QD=21.69;ReadPosRankSum=2.424;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4142,465,0 chrXII 677110 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.44;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3345,372,0 chrXII 677115 . T C 3096 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.85;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3129,369,0 chrXII 677132 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.93;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3377,360,0 chrXII 677164 . A G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=2.824;HaplotypeScore=9.3611;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-0.794;QD=19.50;ReadPosRankSum=2.383;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2900,327,0 chrXII 677323 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=169;Dels=0.00;FS=10.193;HaplotypeScore=11.1893;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.993;QD=22.21;ReadPosRankSum=2.376;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3753,420,0 chrXII 677545 . A G 4707.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.4340;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.40;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:4707,534,0 chrXII 677699 . T G 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.162;QD=21.48;ReadPosRankSum=1.688;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5091,582,0 chrXII 677763 . T A 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=201;Dels=0.00;FS=6.174;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.654;QD=21.03;ReadPosRankSum=2.376;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4228,462,0 chrXII 677815 . C A 5598.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.2046;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.66;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:5598,642,0 chrXII 677890 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=3.762;HaplotypeScore=9.8141;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.631;QD=19.68;ReadPosRankSum=1.697;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:3876,432,0 chrXII 677900 . T C 3037 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.6372;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.06;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3070,345,0 chrXII 677991 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.63;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3440,381,0 chrXII 678116 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.09;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3532,399,0 chrXII 678194 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.94;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3145,342,0 chrXII 678512 . G T 2427 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.42;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2460,270,0 chrXII 678530 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=19.43;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2034,225,0 chrXII 678531 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=19.88;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2081,225,0 chrXII 678541 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.73;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2000,219,0 chrXII 678658 . C T 1938 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.78;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1971,216,0 chrXII 678718 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.74;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1875,207,0 chrXII 678751 . T C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.036;QD=21.84;ReadPosRankSum=1.696;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2151,237,0 chrXII 678793 . C G 1936 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.51;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1969,222,0 chrXII 678817 . T A 1672 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.67;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1705,192,0 chrXII 678971 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.06;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2896,306,0 chrXII 679180 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.47;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2849,312,0 chrXII 679614 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.021;QD=21.45;ReadPosRankSum=1.669;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3560,402,0 chrXII 679633 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=163;Dels=0.00;FS=9.193;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.463;QD=18.35;ReadPosRankSum=2.871;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3024,351,0 chrXII 680510 . C G 5298.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5298,588,0 chrXII 680775 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=174;Dels=0.00;FS=2.921;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.878;QD=22.76;ReadPosRankSum=2.421;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3960,450,0 chrXII 680974 . A G 2235 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=14.80;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2268,267,0 chrXII 681115 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=3.424;HaplotypeScore=14.3761;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;MQRankSum=0.256;QD=22.68;ReadPosRankSum=1.712;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3991,441,0 chrXII 681443 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.92;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3553,384,0 chrXII 681563 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=136;Dels=0.00;FS=3.522;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.450;QD=22.66;ReadPosRankSum=1.706;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3115,345,0 chrXII 681851 . A G 3858.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.8003;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.30;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3858,441,0 chrXII 682040 . G A 4626.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.74;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4626,504,0 chrXII 682248 . A C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.921;QD=19.58;ReadPosRankSum=1.701;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2206,249,0 chrXII 682348 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.06;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2800,309,0 chrXII 682688 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7953;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.05;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2491,294,0 chrXII 682770 . C A 2537 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2570,291,0 chrXII 682830 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.44;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3642,399,0 chrXII 682889 . C A 3097 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=23.46;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3130,342,0 chrXII 682910 . A G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.983;QD=21.44;ReadPosRankSum=1.701;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2413,273,0 chrXII 683323 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.587;QD=21.22;ReadPosRankSum=1.703;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2601,297,0 chrXII 683405 . T C 2342 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.10;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2375,276,0 chrXII 683462 . G A 970 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1003,111,0 chrXII 683798 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2388,264,0 chrXII 683858 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.876;QD=23.09;ReadPosRankSum=1.656;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4202,480,0 chrXII 683924 . A G 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=201;Dels=0.00;FS=2.067;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.445;QD=21.44;ReadPosRankSum=2.815;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4310,492,0 chrXII 684068 . T G 5104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=234;Dels=0.00;FS=3.402;HaplotypeScore=11.5949;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.314;QD=21.81;ReadPosRankSum=1.717;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5104,582,0 chrXII 684122 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.78;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4185,456,0 chrXII 684167 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.788;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.329;QD=22.55;ReadPosRankSum=1.659;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4262,486,0 chrXII 684641 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=185;Dels=0.00;FS=5.640;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.125;QD=20.97;ReadPosRankSum=2.962;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:3880,456,0 chrXII 684653 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.71;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4081,459,0 chrXII 684683 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.17;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3591,426,0 chrXII 684785 . G A 5040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.144;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.3542;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.345;QD=24.35;ReadPosRankSum=-0.942;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5040,532,0 chrXII 685721 . A T 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=4.127;HaplotypeScore=14.4745;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.647;QD=19.26;ReadPosRankSum=1.663;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2942,321,0 chrXII 685799 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.06;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3412,381,0 chrXII 686636 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=17.4295;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.50;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2957,318,0 chrXII 686785 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4639;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.88;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3501,375,0 chrXII 686789 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.00;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3141,354,0 chrXII 687563 . A T 163.06 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=46.6315;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=2.67;SB=-6.731e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:21:196,21,0 chrXII 687687 . C G 1540 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.65;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1573,186,0 chrXII 687746 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.23;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1878,213,0 chrXII 687798 . A C 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.908;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=1.656;QD=20.95;ReadPosRankSum=1.694;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1981,225,0 chrXII 687816 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=22.45;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2188,237,0 chrXII 687973 . A C 1529 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=22.49;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1562,177,0 chrXII 688077 . G A 1226 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=20.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1259,138,0 chrXII 688227 . C A 782 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=20.05;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:815,87,0 chrXII 688237 . T G 715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-0.730;QD=18.82;ReadPosRankSum=1.641;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:84:748,84,0 chrXII 688265 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;QD=20.39;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1277,144,0 chrXII 688326 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=22.33;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2043,234,0 chrXII 688413 . G T 1821 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.65;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1854,201,0 chrXII 688522 . C T 1734 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=67.2422;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.82;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1767,198,0 chrXII 688789 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.74;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1980,213,0 chrXII 688815 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.081;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.833;QD=19.49;ReadPosRankSum=2.061;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:1534,152,0 chrXII 689216 . G T 2392 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.41;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2425,261,0 chrXII 689374 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.65;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3397,372,0 chrXII 689719 . G A 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.295;DP=95;Dels=0.00;FS=5.153;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.003;QD=21.53;ReadPosRankSum=-0.164;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2078,203,0 chrXII 689916 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.35;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1486,165,0 chrXII 689953 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.61;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1671,177,0 chrXII 689955 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.47;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1658,177,0 chrXII 690031 . A G 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=3.644;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-0.834;QD=15.80;ReadPosRankSum=1.689;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1329,147,0 chrXII 690034 . G T 1242 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=15.33;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1275,141,0 chrXII 690162 . T C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=4.323;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.565;QD=21.64;ReadPosRankSum=1.694;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2024,237,0 chrXII 690280 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.78;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1696,192,0 chrXII 690479 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.31;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3762,408,0 chrXII 690760 . G A 4676.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.81;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4676,525,0 chrXII 691485 . T A 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.204;QD=22.29;ReadPosRankSum=1.707;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3064,336,0 chrXII 691605 . A G 3035 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.35;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3068,342,0 chrXII 691866 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.007;QD=23.59;ReadPosRankSum=1.652;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3076,351,0 chrXII 693579 . A G 3149 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.72;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3182,360,0 chrXII 693756 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.24;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2636,291,0 chrXII 693898 . A C 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.559;QD=20.94;ReadPosRankSum=2.391;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1771,210,0 chrXII 694010 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.65;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1364,150,0 chrXII 694040 . T A 1552 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.16;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1585,171,0 chrXII 694211 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.00;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2211,243,0 chrXII 694217 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.62;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2205,243,0 chrXII 694318 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.23;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2868,306,0 chrXII 694377 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.44;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2404,270,0 chrXII 694746 . A G 2699 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.68;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2732,306,0 chrXII 694826 . A T 1680 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.00;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1713,195,0 chrXII 694841 . T C 1493 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.97;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1526,171,0 chrXII 694862 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.98;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1448,159,0 chrXII 694939 . A G 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.094;QD=22.47;ReadPosRankSum=1.685;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1696,189,0 chrXII 694951 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.86;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1432,165,0 chrXII 694982 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.34;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:989,108,0 chrXII 695349 . A G 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=199;Dels=0.00;FS=3.211;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.374;QD=22.15;ReadPosRankSum=1.697;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4408,501,0 chrXII 695484 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.96;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4391,480,0 chrXII 695718 . C A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.44;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3559,402,0 chrXII 696350 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.39;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2374,261,0 chrXII 696795 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.16;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2089,240,0 chrXII 696990 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.29;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1861,213,0 chrXII 697164 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.87;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2297,243,0 chrXII 697174 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.63;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2196,246,0 chrXII 697261 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2373,279,0 chrXII 697759 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3157,345,0 chrXII 698073 . C T 3199 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3232,366,0 chrXII 698944 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.47;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3328,363,0 chrXII 699067 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5007;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.54;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3640,411,0 chrXII 699237 . G T 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=168;Dels=0.00;FS=3.424;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.451;QD=23.68;ReadPosRankSum=0.325;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3979,444,0 chrXII 699518 . T C 2680 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.00;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2713,312,0 chrXII 699605 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.31;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2974,324,0 chrXII 699817 . G C 1140 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.00;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1173,129,0 chrXII 699895 . C T 390 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.25;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:423,48,0 chrXII 699911 . G A 351 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=2.7853;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=14.04;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,22:24:42:384,42,0 chrXII 700054 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.93;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3049,330,0 chrXII 700181 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=161;Dels=0.00;FS=2.940;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-2.142;QD=22.29;ReadPosRankSum=2.404;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3588,405,0 chrXII 700314 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.1047;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.577;QD=22.59;ReadPosRankSum=1.713;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4246,474,0 chrXII 701265 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=17.00;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:917,105,0 chrXII 701320 . T C 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=2.044;QD=20.40;ReadPosRankSum=2.396;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1889,210,0 chrXII 701704 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.537;QD=21.68;ReadPosRankSum=2.271;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2721,306,0 chrXII 701793 . A T 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.984;QD=20.45;ReadPosRankSum=1.682;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2875,312,0 chrXII 702069 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2823,309,0 chrXII 702363 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.07;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2218,249,0 chrXII 702384 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.370;QD=20.57;ReadPosRankSum=1.654;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1864,213,0 chrXII 702474 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3068,336,0 chrXII 702585 . C G 3617.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.61;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3617,402,0 chrXII 702729 . A G 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=219;Dels=0.00;FS=3.408;HaplotypeScore=11.3317;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.525;QD=23.34;ReadPosRankSum=0.631;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:5111,582,0 chrXII 702788 . G A 4931.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.15;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4931,552,0 chrXII 702990 . T C 2872 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.18;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2905,351,0 chrXII 703272 . C G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.62;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3249,384,0 chrXII 703296 . A C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=134;Dels=0.00;FS=9.736;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.571;QD=17.77;ReadPosRankSum=2.827;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2414,285,0 chrXII 703659 . G A 4969.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.66;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4969,564,0 chrXII 704450 . C T 758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.796;DP=133;Dels=0.02;FS=2.229;HaplotypeScore=33.8053;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=0.505;QD=5.70;ReadPosRankSum=0.875;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:16,111:130:33:791,33,0 chrXII 704793 . A G 4931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.157;QD=20.89;ReadPosRankSum=1.673;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:4931,570,0 chrXII 704829 . G A 4844.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.4726;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.32;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4844,528,0 chrXII 704992 . T G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=178;Dels=0.00;FS=3.559;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.264;QD=20.16;ReadPosRankSum=1.654;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3588,408,0 chrXII 705191 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.133;QD=22.37;ReadPosRankSum=0.067;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3512,393,0 chrXII 705209 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.56;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2947,327,0 chrXII 705221 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.46;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2991,318,0 chrXII 705383 . A G 3048 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.93;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3081,357,0 chrXII 705503 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.22;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2541,273,0 chrXII 705704 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=111;Dels=0.00;FS=2.970;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.011;QD=23.02;ReadPosRankSum=2.383;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2588,285,0 chrXII 706112 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=157;Dels=0.00;FS=12.151;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.865;QD=23.22;ReadPosRankSum=2.929;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3646,399,0 chrXII 706444 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=200;Dels=0.00;FS=3.798;HaplotypeScore=11.2830;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.001;QD=21.72;ReadPosRankSum=1.680;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4343,498,0 chrXII 706510 . G A 5359.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5359,579,0 chrXII 706906 . T C 2363 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8567;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.91;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2396,273,0 chrXII 706966 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.75;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2882,324,0 chrXII 707088 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.98;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2634,294,0 chrXII 707098 . T C 2200 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.00;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2233,246,0 chrXII 707220 . A T 3104 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.97;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3137,339,0 chrXII 707365 . A T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.55;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3439,378,0 chrXII 708132 . C A 3050 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.79;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3083,339,0 chrXII 708358 . G T 1785 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.51;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1818,204,0 chrXII 708425 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.19;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2097,231,0 chrXII 708947 . A G 2740 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=131;Dels=0.00;FS=2.706;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;MQRankSum=0.178;QD=20.92;ReadPosRankSum=2.412;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2773,318,0 chrXII 708955 . C T 2627 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=21.19;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2660,291,0 chrXII 708957 . C T 2599 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=21.30;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2632,288,0 chrXII 709003 . C G 3144 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.05;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3177,366,0 chrXII 709384 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.245;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.590;QD=22.31;ReadPosRankSum=1.671;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3815,444,0 chrXII 709420 . A G 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.760;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.359;QD=23.42;ReadPosRankSum=1.711;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3888,441,0 chrXII 710068 . C A 2181 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.26;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2214,234,0 chrXII 710116 . A G 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.732;QD=18.54;ReadPosRankSum=1.674;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1127,126,0 chrXII 710493 . A T 2279 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.53;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2312,258,0 chrXII 710558 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.463;QD=20.98;ReadPosRankSum=1.646;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3399,387,0 chrXII 710894 . C G 3164 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5237;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.93;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3197,360,0 chrXII 710950 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.33;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3182,345,0 chrXII 711069 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.64;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2608,294,0 chrXII 711337 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.4948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.644;QD=21.01;ReadPosRankSum=1.675;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2596,306,0 chrXII 711375 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3159,342,0 chrXII 711837 . T G 3442.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.07;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3442,399,0 chrXII 712895 . T C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.927;QD=22.23;ReadPosRankSum=1.571;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,42:43:99:989,117,0 chrXII 712958 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1568,168,0 chrXII 712990 . A C 2062 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.98;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2095,240,0 chrXII 713021 . T C 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.275;QD=23.42;ReadPosRankSum=1.694;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2164,243,0 chrXII 713047 . A T 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=4.246;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.446;QD=22.64;ReadPosRankSum=1.669;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2501,276,0 chrXII 713485 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=166;Dels=0.00;FS=4.269;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.861;QD=23.15;ReadPosRankSum=1.668;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3843,426,0 chrXII 714020 . G A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=17.6734;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.51;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4913,531,0 chrXII 714278 . G T 5647.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.1923;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.59;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5647,633,0 chrXII 714368 . C T 5154.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.7026;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.75;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5154,585,0 chrXII 714407 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.0740;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.47;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:3930,450,0 chrXII 714439 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4065,444,0 chrXII 714641 . G A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.7567;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.49;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3847,438,0 chrXII 715119 . C T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4455,498,0 chrXII 715595 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.69;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2788,315,0 chrXII 715622 . A T 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=158;Dels=0.00;FS=3.925;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.614;QD=22.32;ReadPosRankSum=1.622;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3527,396,0 chrXII 715716 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.86;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3555,399,0 chrXII 715739 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.43;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2948,336,0 chrXII 715823 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.04;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4327,471,0 chrXII 715955 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.01;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3889,420,0 chrXII 716177 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=20.49;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2635,288,0 chrXII 716399 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.46;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3200,348,0 chrXII 716594 . T C 3041 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.69;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3074,363,0 chrXII 716675 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=142;Dels=0.00;FS=6.960;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=0.649;QD=21.79;ReadPosRankSum=2.363;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3127,360,0 chrXII 717136 . G A 905 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:938,102,0 chrXII 717949 . G C 2085 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.72;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2118,240,0 chrXII 718154 . A G 679 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=17.87;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:81:712,81,0 chrXII 718515 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.174;QD=21.15;ReadPosRankSum=1.709;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3205,372,0 chrXII 720053 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2295,249,0 chrXII 721257 . G A 4042.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4042,447,0 chrXII 721788 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1962,216,0 chrXII 721960 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8134;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.43;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2155,243,0 chrXII 722023 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.948;HaplotypeScore=10.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.483;QD=20.39;ReadPosRankSum=1.707;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2887,336,0 chrXII 722593 . T C 2661 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.81;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2694,297,0 chrXII 722620 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.27;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:3012,321,0 chrXII 722716 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.69;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2393,261,0 chrXII 722810 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=17.5535;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.56;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2186,237,0 chrXII 723253 . C A 2138 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5619;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.26;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2171,234,0 chrXII 723283 . G C 2410 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.42;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2443,276,0 chrXII 723463 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.503;QD=18.61;ReadPosRankSum=2.398;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3574,408,0 chrXII 724157 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.7184;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.06;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2362,261,0 chrXII 724573 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.75;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1672,189,0 chrXII 724808 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1688,195,0 chrXII 725534 . G A 1099 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=6.58;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:1132,126,0 chrXII 725538 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=6.76;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,161:162:99:1128,120,0 chrXII 725547 . T A 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=7.645;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;MQRankSum=-0.783;QD=7.85;ReadPosRankSum=1.688;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,156:157:99:1265,138,0 chrXII 725578 . T C 1932 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=12.15;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1965,231,0 chrXII 725609 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.06;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2110,231,0 chrXII 725625 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.10;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2353,255,0 chrXII 725693 . A T 2055 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.35;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2088,228,0 chrXII 725936 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.49;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2289,249,0 chrXII 725937 . T C 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=124;Dels=0.00;FS=6.640;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.922;QD=17.19;ReadPosRankSum=2.410;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2164,243,0 chrXII 726161 . C G 3676.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.28;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3676,432,0 chrXII 726449 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2850,321,0 chrXII 726521 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=3.075;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.178;QD=22.17;ReadPosRankSum=1.707;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3048,348,0 chrXII 726848 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.27;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4062,477,0 chrXII 727094 . G A 4024.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.23;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4024,450,0 chrXII 727106 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=188;Dels=0.00;FS=6.428;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.393;QD=20.71;ReadPosRankSum=2.397;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:3893,444,0 chrXII 727328 . A G 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=129;Dels=0.00;FS=2.765;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.259;QD=21.82;ReadPosRankSum=1.086;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2848,330,0 chrXII 727454 . C T 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.094;DP=84;Dels=0.00;FS=2.986;HaplotypeScore=6.3120;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=2.212;QD=21.35;ReadPosRankSum=1.411;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1826,183,0 chrXII 727539 . T C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.717;QD=22.89;ReadPosRankSum=1.702;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2734,306,0 chrXII 727901 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=215;Dels=0.00;FS=7.319;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.225;QD=21.21;ReadPosRankSum=2.415;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4560,513,0 chrXII 727910 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.65;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4357,507,0 chrXII 728027 . A G 4211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.549;QD=22.28;ReadPosRankSum=1.714;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4211,477,0 chrXII 728082 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.20;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3797,414,0 chrXII 728551 . T C 2316 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.32;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2349,276,0 chrXII 729242 . T C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3845,429,0 chrXII 729962 . T C 4930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=230;Dels=0.00;FS=8.533;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.497;QD=21.43;ReadPosRankSum=3.309;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:4,226:230:99:4930,567,0 chrXII 730435 . T C 1980 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2013,225,0 chrXII 730471 . T A 2041 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.73;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2074,225,0 chrXII 730778 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.60;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3493,378,0 chrXII 731012 . C T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.74;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4503,486,0 chrXII 731264 . A T 5054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.8603;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.627;QD=22.46;ReadPosRankSum=1.337;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5054,525,0 chrXII 731668 . T A 687 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=21.47;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:720,81,0 chrXII 731669 . G A 681 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=21.97;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:714,81,0 chrXII 731671 . A T 648 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;MQRankSum=-1.733;QD=21.60;ReadPosRankSum=1.617;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:78:681,78,0 chrXII 731677 . G C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=1;MQRankSum=1.380;QD=5.57;ReadPosRankSum=-0.720;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:3,4:7:9:71,9,0 chrXII 731718 . G T 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DP=58;Dels=0.00;FS=23.619;HaplotypeScore=8.7028;MLEAC=1;MLEAF=0.500;MQ=15.41;MQ0=8;MQRankSum=-0.659;QD=0.43;ReadPosRankSum=-2.409;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:42,16:58:55:55,0,229 chrXII 731736 . G A 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;DP=75;Dels=0.00;FS=2.436;HaplotypeScore=7.4173;MLEAC=1;MLEAF=0.500;MQ=14.58;MQ0=21;MQRankSum=2.964;QD=0.56;ReadPosRankSum=-0.064;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,11:75:72:72,0,274 chrXII 731737 . T C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930;DP=76;Dels=0.00;FS=2.436;HaplotypeScore=7.4173;MLEAC=1;MLEAF=0.500;MQ=14.49;MQ0=22;MQRankSum=2.899;QD=0.54;ReadPosRankSum=-0.064;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,11:76:71:71,0,275 chrXII 731957 . C T 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.580;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=11.1369;MLEAC=1;MLEAF=0.500;MQ=13.03;MQ0=20;MQRankSum=3.201;QD=0.83;ReadPosRankSum=2.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,5:65:75:84,0,75 chrXII 731990 . T C 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=6.7443;MLEAC=1;MLEAF=0.500;MQ=17.76;MQ0=8;MQRankSum=2.585;QD=1.93;ReadPosRankSum=2.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,5:30:82:88,0,82 chrXII 732073 . T C 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.628;QD=20.13;ReadPosRankSum=1.701;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2308,258,0 chrXII 732378 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.096;QD=21.20;ReadPosRankSum=1.684;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3107,360,0 chrXII 732429 . A G 2997 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=5.2779;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.39;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3030,342,0 chrXII 732435 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5055;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.03;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3208,351,0 chrXII 732503 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.2885;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.22;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3755,417,0 chrXII 732565 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=22.0525;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.575;QD=21.23;ReadPosRankSum=2.393;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3694,417,0 chrXII 733795 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=189;Dels=0.00;FS=3.580;HaplotypeScore=14.4233;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.473;QD=21.25;ReadPosRankSum=1.714;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4016,462,0 chrXII 733837 . G A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.02;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4347,465,0 chrXII 734035 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.704;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.240;QD=23.35;ReadPosRankSum=1.694;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4273,501,0 chrXII 734157 . A T 3181 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.79;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3214,360,0 chrXII 736154 . G A 5335.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.9319;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.82;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5335,588,0 chrXII 736352 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4623,537,0 chrXII 736586 . G A 4682.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.7403;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.01;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4682,507,0 chrXII 736739 . G A 4756.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.0598;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.42;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4756,513,0 chrXII 736757 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.68;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4467,489,0 chrXII 737363 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.14;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4317,468,0 chrXII 737369 . G T 4303.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=22.18;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4303,471,0 chrXII 737570 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.09;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2411,261,0 chrXII 737776 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3727;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.49;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3359,363,0 chrXII 737804 . T A 3139 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.21;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3172,345,0 chrXII 738097 . G C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.18;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3772,420,0 chrXII 738125 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2064;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.498;QD=22.15;ReadPosRankSum=1.710;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3566,405,0 chrXII 738353 . A G 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=220;Dels=0.00;FS=7.730;HaplotypeScore=14.5342;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.892;QD=22.13;ReadPosRankSum=2.381;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,214:220:99:4868,555,0 chrXII 738992 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=16.0633;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.24;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3590,390,0 chrXII 739067 . A G 3731.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3731,438,0 chrXII 739184 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4321,486,0 chrXII 739280 . C T 5001.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.26;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5001,537,0 chrXII 739624 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=186;Dels=0.00;FS=5.516;HaplotypeScore=13.8820;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.622;QD=23.16;ReadPosRankSum=2.908;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4308,477,0 chrXII 739958 . G A 5054.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5054,546,0 chrXII 740141 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4104,441,0 chrXII 740405 . G A 5012.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.98;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5012,546,0 chrXII 740813 . A G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=124;Dels=0.00;FS=8.158;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.845;QD=21.32;ReadPosRankSum=2.389;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2677,303,0 chrXII 741197 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.010;QD=22.65;ReadPosRankSum=1.693;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4009,456,0 chrXII 741373 . C T 4564.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.90;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4564,489,0 chrXII 741422 . G A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.64;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4326,474,0 chrXII 741983 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.95;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4108,441,0 chrXII 742073 . T G 2614 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.43;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2647,297,0 chrXII 742088 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.17;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2615,297,0 chrXII 742174 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4185,459,0 chrXII 742352 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.54;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3601,390,0 chrXII 742474 . G T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.27;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4143,453,0 chrXII 742787 . T C 2717 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2750,306,0 chrXII 742979 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=4.090;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.207;QD=23.99;ReadPosRankSum=1.710;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3815,426,0 chrXII 743013 . T A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=24.02;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4156,468,0 chrXII 743135 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=167;Dels=0.00;FS=3.036;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-0.360;QD=22.68;ReadPosRankSum=2.347;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3788,423,0 chrXII 743183 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=22.17;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3347,363,0 chrXII 743189 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.16;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3144,339,0 chrXII 743204 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=136;Dels=0.00;FS=5.181;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.266;QD=19.72;ReadPosRankSum=3.393;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:4,131:136:99:2715,306,0 chrXII 743237 . A G 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=126;Dels=0.00;FS=2.582;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.344;QD=18.63;ReadPosRankSum=2.912;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2381,267,0 chrXII 743287 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=138;Dels=0.00;FS=10.835;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=0.009;QD=18.57;ReadPosRankSum=2.165;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2596,294,0 chrXII 743291 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.36;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2782,297,0 chrXII 743333 . T G 2384 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.20;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2417,270,0 chrXII 743350 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.63;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2306,252,0 chrXII 743452 . G T 3050 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.64;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3083,336,0 chrXII 743495 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.4960;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.90;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2967,324,0 chrXII 743510 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.066;QD=21.24;ReadPosRankSum=2.412;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2794,318,0 chrXII 743555 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.082;QD=19.24;ReadPosRankSum=1.705;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2457,276,0 chrXII 743633 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.42;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4543,489,0 chrXII 743763 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.26;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3809,408,0 chrXII 743897 . A G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.479;QD=20.85;ReadPosRankSum=1.683;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2973,339,0 chrXII 744124 . T C 2641 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2674,306,0 chrXII 744207 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.45;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2871,312,0 chrXII 744416 . A G 3046 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.07;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3079,363,0 chrXII 744446 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.41;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2400,270,0 chrXII 744454 . A G 2267 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.89;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2300,258,0 chrXII 744511 . A G 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.634;QD=18.76;ReadPosRankSum=1.704;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2359,261,0 chrXII 744533 . T C 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=128;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.440;QD=18.79;ReadPosRankSum=1.622;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2438,264,0 chrXII 744566 . A T 2913 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.26;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2946,315,0 chrXII 744576 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.27;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2769,303,0 chrXII 744593 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.2645;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.46;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2719,297,0 chrXII 744793 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.25;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1563,186,0 chrXII 744885 . T A 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.522;QD=19.33;ReadPosRankSum=1.680;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1309,150,0 chrXII 744968 . T C 1678 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.99;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1711,195,0 chrXII 745159 . A G 1677 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.23;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1710,192,0 chrXII 745167 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.13;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1543,168,0 chrXII 745179 . C G 1415 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.81;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1448,165,0 chrXII 745460 . A G 1405 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.07;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1438,171,0 chrXII 745552 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.23;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2878,312,0 chrXII 745609 . C G 2197 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.10;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2230,252,0 chrXII 745660 . C G 1954 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=16.70;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1987,225,0 chrXII 745671 . A G 2116 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.63;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2149,237,0 chrXII 745706 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3200;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.57;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2837,312,0 chrXII 745835 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.75;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3681,420,0 chrXII 746036 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3570,390,0 chrXII 746372 . T A 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=8.5489;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.165;QD=22.89;ReadPosRankSum=1.712;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3915,423,0 chrXII 746382 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.128;QD=22.70;ReadPosRankSum=1.709;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3382,381,0 chrXII 746828 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3313,378,0 chrXII 746867 . G C 3910.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.0764;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.70;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3910,438,0 chrXII 747171 . C G 2921 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.13;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2954,330,0 chrXII 747358 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.45;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2458,273,0 chrXII 747374 . T C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=118;Dels=0.00;FS=2.584;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.664;QD=20.96;ReadPosRankSum=2.906;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2506,285,0 chrXII 747505 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.461;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-1.171;QD=23.43;ReadPosRankSum=1.708;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3327,378,0 chrXII 747529 . G T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.96;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3605,390,0 chrXII 747719 . G T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=24.80;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3323,366,0 chrXII 747877 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7168;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=20.42;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2810,315,0 chrXII 747898 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=17.66;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2346,270,0 chrXII 747900 . A C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.431;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-1.386;QD=18.41;ReadPosRankSum=1.705;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2426,270,0 chrXII 747926 . G C 1587 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=12.80;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:1620,192,0 chrXII 747931 . T C 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;MQRankSum=-0.718;QD=14.63;ReadPosRankSum=1.676;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1833,204,0 chrXII 748189 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=159;Dels=0.00;FS=2.852;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.039;QD=22.86;ReadPosRankSum=2.388;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3634,414,0 chrXII 748299 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=201;Dels=0.00;FS=3.516;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.143;QD=21.14;ReadPosRankSum=0.277;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4249,465,0 chrXII 748362 . T C 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=211;Dels=0.00;FS=3.014;HaplotypeScore=19.1770;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.206;QD=21.46;ReadPosRankSum=2.391;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4528,504,0 chrXII 748416 . A T 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=228;Dels=0.00;FS=5.855;HaplotypeScore=11.9461;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.705;QD=21.72;ReadPosRankSum=2.952;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:3,225:228:99:4953,555,0 chrXII 748497 . T A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.37;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4359,495,0 chrXII 748572 . A G 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=2.790;HaplotypeScore=11.2312;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.060;QD=22.21;ReadPosRankSum=2.423;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4086,465,0 chrXII 748731 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.77;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2346,270,0 chrXII 748735 . A T 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.729;QD=21.32;ReadPosRankSum=1.671;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2464,264,0 chrXII 749160 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.28;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2033,231,0 chrXII 749196 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.37;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2256,249,0 chrXII 749208 . T A 2444 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.22;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2477,267,0 chrXII 749233 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.19;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2557,291,0 chrXII 749263 . A C 2432 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.71;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2465,276,0 chrXII 749319 . G T 2069 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.47;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2102,231,0 chrXII 749327 . A G 2107 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.81;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2140,243,0 chrXII 749415 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.55;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3340,381,0 chrXII 749785 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.68;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4379,471,0 chrXII 749793 . A G 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.057;QD=21.21;ReadPosRankSum=1.714;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4135,465,0 chrXII 750648 . A C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=149;Dels=0.00;FS=2.776;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.272;QD=18.79;ReadPosRankSum=2.400;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2832,324,0 chrXII 750669 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.25;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2620,306,0 chrXII 750944 . C T 2619 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.47;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2652,285,0 chrXII 750988 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7318;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.22;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2843,309,0 chrXII 751083 . G C 2577 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.30;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2610,303,0 chrXII 751110 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.17;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2454,270,0 chrXII 751827 . A G 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.192;QD=18.85;ReadPosRankSum=1.697;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1899,216,0 chrXII 752103 . C A 1058 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=26.45;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1091,120,0 chrXII 752330 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.30;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2803,300,0 chrXII 752932 . A G 4167.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4167,471,0 chrXII 753525 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.680;QD=22.00;ReadPosRankSum=1.701;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2497,294,0 chrXII 753679 . T C 2505 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.78;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2538,291,0 chrXII 754092 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.52;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2848,303,0 chrXII 754207 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.19;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2046,231,0 chrXII 754651 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4678;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.94;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2878,312,0 chrXII 754846 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3100,339,0 chrXII 754978 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;DP=142;Dels=0.00;FS=6.072;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.256;QD=21.07;ReadPosRankSum=2.949;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:4,135:142:99:3025,339,0 chrXII 755245 . A G 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.8587;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.596;QD=22.22;ReadPosRankSum=1.620;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:4200,468,0 chrXII 755553 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.99;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3815,411,0 chrXII 755941 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.40;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3510,399,0 chrXII 756137 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.257;DP=151;Dels=0.00;FS=3.378;HaplotypeScore=12.8396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.819;QD=21.84;ReadPosRankSum=0.187;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3298,343,0 chrXII 756247 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=4.048;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.321;QD=21.55;ReadPosRankSum=1.710;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3513,405,0 chrXII 757090 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=3.305;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.079;QD=21.15;ReadPosRankSum=1.704;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2656,294,0 chrXII 757131 . A G 3007 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.49;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3040,342,0 chrXII 757478 . T A 461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=74;Dels=0.01;FS=3.332;HaplotypeScore=67.7812;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.486;QD=6.23;ReadPosRankSum=1.362;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,27:73:54:494,54,0 chrXII 757481 . A G 89.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=68.7706;MLEAC=1;MLEAF=0.500;MQ=52.37;MQ0=0;MQRankSum=0.280;QD=1.20;ReadPosRankSum=-4.853;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:59,15:74:99:119,0,579 chrXII 757763 . C T 2328 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.00;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2361,255,0 chrXII 758451 . A C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.027;QD=21.48;ReadPosRankSum=1.695;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4060,477,0 chrXII 758853 . C T 3486.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.1121;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.06;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3486,375,0 chrXII 759162 . A G 2036 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.99;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2069,246,0 chrXII 759216 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0374;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.90;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2620,288,0 chrXII 759288 . T G 2454 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=16.92;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2487,282,0 chrXII 759290 . A G 2441 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=-0.133;QD=16.95;ReadPosRankSum=1.708;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2474,285,0 chrXII 759292 . A T 2502 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;MQRankSum=-1.241;QD=17.74;ReadPosRankSum=1.708;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2535,276,0 chrXII 759309 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=17.47;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2741,294,0 chrXII 759452 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6699;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.87;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3476,390,0 chrXII 759809 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2602,297,0 chrXII 759985 . A G 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=3.590;HaplotypeScore=9.6776;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.417;QD=23.97;ReadPosRankSum=1.712;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4242,480,0 chrXII 760163 . C G 2617 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.99;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2650,303,0 chrXII 760396 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=21.76;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,89:94:99:2078,234,0 chrXII 760415 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=23.43;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2259,249,0 chrXII 760502 . C A 2278 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=22.55;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2311,261,0 chrXII 760537 . A G 2802 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=23.35;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2835,315,0 chrXII 760603 . C T 2292 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=16.61;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2325,252,0 chrXII 760610 . A G 1935 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=142;Dels=0.00;FS=3.041;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;MQRankSum=-2.051;QD=13.63;ReadPosRankSum=2.415;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:1968,228,0 chrXII 760613 . A G 1909 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=134;Dels=0.00;FS=9.531;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;MQRankSum=-2.181;QD=14.25;ReadPosRankSum=2.903;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:1942,219,0 chrXII 760615 . T A 1892 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.112;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;MQRankSum=-0.926;QD=14.67;ReadPosRankSum=0.980;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1925,213,0 chrXII 760639 . T C 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;MQRankSum=-1.611;QD=12.12;ReadPosRankSum=1.684;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:1778,204,0 chrXII 760652 . C A 1964 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=13.73;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1997,216,0 chrXII 760719 . A T 2824 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=21.23;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2857,318,0 chrXII 760751 . C T 2421 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=17.29;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2454,276,0 chrXII 761042 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7393;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.59;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3019,333,0 chrXII 761118 . A T 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0235;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.310;QD=21.42;ReadPosRankSum=1.712;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3705,399,0 chrXII 761457 . C T 4536.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.00;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4536,492,0 chrXII 761706 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.87;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3476,378,0 chrXII 761755 . A G 2583 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.50;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2616,306,0 chrXII 761814 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=3.962;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.187;QD=20.45;ReadPosRankSum=1.705;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2650,303,0 chrXII 762232 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6308;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.26;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2138,231,0 chrXII 762247 . A T 1953 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.70;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1986,213,0 chrXII 762492 . A G 373 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=61.69;MQ0=0;QD=19.63;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:45:406,45,0 chrXII 762938 . T C 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=115;Dels=0.00;FS=2.657;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.118;QD=21.95;ReadPosRankSum=2.386;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2557,291,0 chrXII 763325 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.61;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3479,396,0 chrXII 763412 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.778;DP=150;Dels=0.00;FS=11.172;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.127;QD=22.08;ReadPosRankSum=3.607;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:5,142:150:99:3312,375,0 chrXII 763502 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.57;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3341,387,0 chrXII 763640 . A G 3209 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3242,366,0 chrXII 763742 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7244;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.46;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3519,390,0 chrXII 764314 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.06;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3596,405,0 chrXII 764448 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.84;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2567,288,0 chrXII 764466 . C A 2640 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.95;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2673,288,0 chrXII 764481 . T C 2571 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.77;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2604,306,0 chrXII 764582 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.89;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3032,330,0 chrXII 764623 . T C 3166 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.45;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3199,366,0 chrXII 764761 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.04;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4216,456,0 chrXII 764796 . T A 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.1312;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.919;QD=23.34;ReadPosRankSum=1.714;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4575,498,0 chrXII 764894 . A G 6235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.064;DP=289;Dels=0.00;FS=10.463;HaplotypeScore=6.2473;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.371;QD=21.57;ReadPosRankSum=1.575;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,287:289:99:6235,689,0 chrXII 764909 . C G 5464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=272;Dels=0.00;FS=5.267;HaplotypeScore=9.3491;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.050;QD=20.09;ReadPosRankSum=1.603;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,269:272:99:5464,609,0 chrXII 765047 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.6771;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.131;QD=19.73;ReadPosRankSum=1.716;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:4360,492,0 chrXII 765551 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=290;Dels=0.00;FS=9.168;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.233;QD=17.52;ReadPosRankSum=2.871;SB=-3.623e+03 GT:AD:DP:GQ:PL 1/1:3,285:290:99:5082,573,0 chrXII 765566 . A G 4615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.504;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.387;QD=16.90;ReadPosRankSum=-0.679;SB=-3.225e+03 GT:AD:DP:GQ:PL 1/1:1,272:273:99:4615,518,0 chrXII 765593 . G A 4973.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=11.5930;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=17.09;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:4973,549,0 chrXII 765652 . T C 4996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=266;Dels=0.00;FS=3.642;HaplotypeScore=8.1263;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.589;QD=18.78;ReadPosRankSum=1.680;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:4996,555,0 chrXII 765881 . A C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=204;Dels=0.00;FS=5.352;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=-0.394;QD=19.87;ReadPosRankSum=2.946;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:4053,459,0 chrXII 765920 . A G 3077 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=16.37;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3110,351,0 chrXII 765921 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=17.05;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3256,351,0 chrXII 765944 . A G 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;MQRankSum=-0.817;QD=13.99;ReadPosRankSum=1.654;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:2523,294,0 chrXII 765962 . C T 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=3.505;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;MQRankSum=1.093;QD=14.41;ReadPosRankSum=1.714;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:2858,306,0 chrXII 765971 . A G 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=192;Dels=0.00;FS=2.945;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-0.123;QD=15.26;ReadPosRankSum=2.372;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,187:192:99:2962,336,0 chrXII 766006 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.08;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3580,390,0 chrXII 766039 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.61;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3511,396,0 chrXII 766116 . A T 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=126;Dels=0.00;FS=2.935;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=0.556;QD=20.04;ReadPosRankSum=2.313;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2558,270,0 chrXII 766186 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=137;Dels=0.00;FS=2.860;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=0.190;QD=18.49;ReadPosRankSum=2.413;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2566,300,0 chrXII 766225 . T G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.848;QD=23.37;ReadPosRankSum=1.708;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3318,384,0 chrXII 766403 . A G 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.313;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.857;QD=20.64;ReadPosRankSum=1.694;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1911,213,0 chrXII 766476 . C T 1184 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.07;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1217,138,0 chrXII 766489 . G A 851 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=16.37;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:884,99,0 chrXII 766775 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.32;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3526,393,0 chrXII 767606 . A G 1862 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1895,210,0 chrXII 767674 . A T 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.867;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.529;QD=24.45;ReadPosRankSum=1.696;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2356,255,0 chrXII 768086 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1523,165,0 chrXII 768325 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.10;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3591,387,0 chrXII 769312 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1271,138,0 chrXII 770182 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3049;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.168;QD=23.10;ReadPosRankSum=1.676;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2897,330,0 chrXII 770488 . T G 3776.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.02;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3776,444,0 chrXII 770685 . A G 6068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=261;Dels=0.00;FS=3.921;HaplotypeScore=19.8246;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.063;QD=23.25;ReadPosRankSum=1.719;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:6068,678,0 chrXII 770742 . T G 5590.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.9018;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.36;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5590,633,0 chrXII 770842 . A T 6000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=277;Dels=0.00;FS=2.906;HaplotypeScore=16.5695;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.369;QD=21.66;ReadPosRankSum=2.387;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:2,274:277:99:6000,675,0 chrXII 770890 . T A 4324.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.74;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4324,480,0 chrXII 770911 . G C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.2580;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.94;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3372,399,0 chrXII 771074 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.7743;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.33;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3896,426,0 chrXII 771112 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.48;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3113,330,0 chrXII 771115 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.46;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2815,318,0 chrXII 771397 . T C 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.981;QD=22.24;ReadPosRankSum=1.695;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4225,468,0 chrXII 771559 . G T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.79;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3901,444,0 chrXII 772134 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.269;QD=22.99;ReadPosRankSum=1.672;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3955,435,0 chrXII 772613 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.15;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3134,342,0 chrXII 772635 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.12;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3607,405,0 chrXII 772830 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.58;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3455,378,0 chrXII 773037 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3037,345,0 chrXII 773493 . A C 2758 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.5622;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.05;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2791,315,0 chrXII 773568 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.6072;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.85;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2684,297,0 chrXII 773796 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.493;QD=23.02;ReadPosRankSum=1.708;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3338,390,0 chrXII 774096 . G C 2408 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2441,273,0 chrXII 774712 . A G 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=153;Dels=0.00;FS=2.884;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.297;QD=19.94;ReadPosRankSum=2.353;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3084,345,0 chrXII 774717 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.976;QD=21.14;ReadPosRankSum=1.708;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3077,345,0 chrXII 775104 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.230;QD=23.38;ReadPosRankSum=2.396;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2161,243,0 chrXII 775811 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3164,342,0 chrXII 776349 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=22.49;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1607,180,0 chrXII 776367 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=21.26;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1585,177,0 chrXII 776377 . A T 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-0.390;QD=19.04;ReadPosRankSum=1.689;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1556,171,0 chrXII 776391 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=17.48;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1379,156,0 chrXII 776421 . T G 1446 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.30;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1479,165,0 chrXII 776424 . T A 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-1.689;QD=18.17;ReadPosRankSum=1.689;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1505,165,0 chrXII 776626 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.07;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2266,261,0 chrXII 776887 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.28;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3538,384,0 chrXII 777814 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6452;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.350;QD=21.85;ReadPosRankSum=1.692;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3780,426,0 chrXII 777868 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.46;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3481,381,0 chrXII 778547 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0172;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.30;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3986,432,0 chrXII 778589 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=3.064;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.620;QD=20.62;ReadPosRankSum=1.689;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3382,399,0 chrXII 778749 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=151;Dels=0.00;FS=9.384;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.073;QD=19.38;ReadPosRankSum=2.954;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2959,351,0 chrXII 778976 . T C 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=193;Dels=0.00;FS=2.970;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.511;QD=22.07;ReadPosRankSum=2.372;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4260,495,0 chrXII 779193 . G A 4911.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.6136;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.61;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4911,540,0 chrXII 779222 . G A 4295.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.03;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4295,471,0 chrXII 779367 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.84;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3909,426,0 chrXII 779622 . C T 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=3.070;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=0.949;QD=19.55;ReadPosRankSum=1.495;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:2927,315,0 chrXII 779623 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5326;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.42;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2869,312,0 chrXII 780099 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.20;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4524,489,0 chrXII 780287 . A G 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=166;Dels=0.00;FS=5.246;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.764;QD=20.78;ReadPosRankSum=3.196;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3450,405,0 chrXII 780315 . C G 3444.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.08;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3444,390,0 chrXII 780360 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.98;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3249,357,0 chrXII 780366 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=153;Dels=0.00;FS=5.458;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.283;QD=18.68;ReadPosRankSum=2.954;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:2891,327,0 chrXII 780447 . T A 3149 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.02;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3182,348,0 chrXII 780550 . A G 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.388;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.577;QD=22.57;ReadPosRankSum=1.703;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2742,303,0 chrXII 780645 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.89;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3032,339,0 chrXII 780774 . G A 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.589;QD=20.79;ReadPosRankSum=0.450;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2112,231,0 chrXII 780841 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.283;QD=19.66;ReadPosRankSum=2.217;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1488,174,0 chrXII 781630 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.27;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2384,258,0 chrXII 781631 . C G 2229 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.6755;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.73;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2262,258,0 chrXII 781671 . T A 2193 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=15.02;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2226,246,0 chrXII 781674 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=14.54;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2272,246,0 chrXII 781795 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.75;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3800,429,0 chrXII 782823 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=22.14;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2313,252,0 chrXII 782829 . T C 2012 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.73;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2045,246,0 chrXII 782839 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-1.058;QD=18.06;ReadPosRankSum=1.701;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2074,240,0 chrXII 782878 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=17.08;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2441,267,0 chrXII 782905 . G T 2234 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.02;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2267,243,0 chrXII 782909 . C A 2155 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.42;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2188,237,0 chrXII 782987 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.63;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1211,135,0 chrXII 783118 . T C 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.787;QD=24.68;ReadPosRankSum=1.693;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2205,252,0 chrXII 783530 . T C 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=2.679;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.484;QD=23.35;ReadPosRankSum=2.379;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1644,186,0 chrXII 783557 . C T 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=5.304;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.155;QD=22.71;ReadPosRankSum=1.510;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1804,195,0 chrXII 783750 . C T 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=18.4677;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.534;QD=19.34;ReadPosRankSum=-0.198;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2779,309,0 chrXII 784087 . T G 4165.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.93;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4165,480,0 chrXII 784121 . C T 4007.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.6225;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=17.20;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:4007,456,0 chrXII 784144 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=17.57;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3532,399,0 chrXII 784173 . C A 2533 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=16.56;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2566,273,0 chrXII 784196 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=15.81;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2151,228,0 chrXII 784216 . G A 1465 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;QD=14.80;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1498,165,0 chrXII 784218 . C A 1443 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=14.88;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1476,162,0 chrXII 784219 . G A 1478 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=15.24;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1511,162,0 chrXII 784223 . C A 1441 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=13.72;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1474,162,0 chrXII 784242 . A G 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=103;Dels=0.00;FS=2.605;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;MQRankSum=-0.792;QD=13.19;ReadPosRankSum=2.911;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:3,99:103:99:1392,162,0 chrXII 784276 . A G 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=2.861;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=0.642;QD=18.72;ReadPosRankSum=2.397;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1793,198,0 chrXII 784462 . A G 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=74;Dels=0.01;FS=3.193;HaplotypeScore=12.6889;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=1.685;QD=17.53;ReadPosRankSum=1.685;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1330,156,0 chrXII 784477 . T A 1268 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=5.6682;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=18.11;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1301,141,0 chrXII 784725 . G T 1426 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.52;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1459,156,0 chrXII 784726 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.12;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1428,156,0 chrXII 784820 . C G 2132 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.4386;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.21;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2165,246,0 chrXII 784967 . A G 2162 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.20;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2195,249,0 chrXII 785227 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3747,423,0 chrXII 785329 . T A 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.785;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.509;QD=23.29;ReadPosRankSum=1.687;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3563,384,0 chrXII 785350 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0704;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.93;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3531,384,0 chrXII 785387 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.29;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3968,429,0 chrXII 786201 . G T 2658 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.97;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2691,294,0 chrXII 786288 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=21.87;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1411,153,0 chrXII 786333 . T C 1852 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=12.1615;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.59;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1885,210,0 chrXII 786375 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=17.40;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1477,165,0 chrXII 786421 . A G 890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=100;Dels=0.00;FS=13.796;HaplotypeScore=9.8779;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;MQRankSum=-2.664;QD=8.90;ReadPosRankSum=2.929;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:3,96:100:99:923,108,0 chrXII 786429 . A C 911 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=9.30;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:944,108,0 chrXII 786436 . A G 849 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=8.16;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:882,102,0 chrXII 786439 . C T 931 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.62;MQ0=0;QD=8.62;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:964,102,0 chrXII 786447 . A G 997 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;QD=9.32;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1030,120,0 chrXII 786552 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=21.73;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2163,237,0 chrXII 786562 . T C 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=111;Dels=0.00;FS=3.041;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-0.521;QD=19.14;ReadPosRankSum=2.361;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2157,243,0 chrXII 786826 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.54;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3852,435,0 chrXII 786991 . A G 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=152;Dels=0.00;FS=2.848;HaplotypeScore=10.9863;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.364;QD=20.68;ReadPosRankSum=2.417;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3177,375,0 chrXII 787039 . G C 3062 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0879;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.87;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3095,357,0 chrXII 787060 . A G 2647 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.06;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2680,300,0 chrXII 787306 . C T 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.200;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.666;QD=16.74;ReadPosRankSum=1.133;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1774,198,0 chrXII 787307 . T A 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.833;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.433;QD=16.63;ReadPosRankSum=1.066;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1763,201,0 chrXII 787382 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.273;QD=20.84;ReadPosRankSum=1.702;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2409,273,0 chrXII 787510 . A C 4434.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.84;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4434,498,0 chrXII 787756 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.3855;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.16;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3991,456,0 chrXII 788342 . G A 5460.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.93;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5460,612,0 chrXII 788350 . T C 5211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.661;DP=237;Dels=0.00;FS=18.370;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.745;QD=21.99;ReadPosRankSum=3.800;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:5,230:237:99:5211,597,0 chrXII 788475 . A G 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=213;Dels=0.00;FS=5.479;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.227;QD=21.60;ReadPosRankSum=2.966;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:3,205:213:99:4600,519,0 chrXII 788536 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.897;QD=19.16;ReadPosRankSum=1.701;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4292,495,0 chrXII 788548 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.17;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4397,480,0 chrXII 788601 . C A 2813 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=14.73;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2846,309,0 chrXII 788615 . A G 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=6.557;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;MQRankSum=-1.152;QD=13.35;ReadPosRankSum=2.422;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:2383,264,0 chrXII 788626 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=188;Dels=0.00;FS=6.475;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;MQRankSum=-0.979;QD=12.43;ReadPosRankSum=2.384;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:2369,270,0 chrXII 788638 . A G 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=181;Dels=0.00;FS=9.551;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;MQRankSum=-0.503;QD=11.64;ReadPosRankSum=2.928;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:2140,246,0 chrXII 788663 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=196;Dels=0.00;FS=13.395;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;MQRankSum=-1.446;QD=12.23;ReadPosRankSum=3.361;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:4,191:196:99:2431,273,0 chrXII 788682 . T C 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=199;Dels=0.00;FS=5.849;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=-0.843;QD=13.52;ReadPosRankSum=2.965;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:2723,315,0 chrXII 788874 . A G 4618.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.5328;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=22.20;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4618,522,0 chrXII 788973 . C T 4700.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=22.71;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4700,507,0 chrXII 788987 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.2389;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=22.19;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4816,519,0 chrXII 789047 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=176;Dels=0.00;FS=4.987;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-1.216;QD=21.08;ReadPosRankSum=3.410;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:3710,414,0 chrXII 789096 . C T 2575 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.3071;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=17.76;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2608,291,0 chrXII 789100 . G A 1769.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;DP=134;Dels=0.00;FS=23.871;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=30.79;MQ0=0;MQRankSum=2.533;QD=13.20;ReadPosRankSum=2.836;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:38,95:134:90:1799,0,90 chrXII 789104 . T A,G 2069.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1,1;MLEAF=0.500,0.500;MQ=30.24;MQ0=0;QD=15.33;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/2:0,90,45:135:99:2129,400,187,1729,0,1675 chrXII 789108 . A G 1454.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.646;DP=133;Dels=0.00;FS=35.802;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.57;MQ0=0;MQRankSum=0.654;QD=10.93;ReadPosRankSum=2.218;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:48,85:133:99:1484,0,255 chrXII 789125 . T G 1021.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.117;DP=113;Dels=0.00;FS=19.007;HaplotypeScore=34.5621;MLEAC=1;MLEAF=0.500;MQ=29.46;MQ0=1;MQRankSum=2.028;QD=9.04;ReadPosRankSum=-1.746;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:40,65:113:99:1051,0,314 chrXII 789131 . A G 968.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;DP=110;Dels=0.00;FS=7.600;HaplotypeScore=34.5621;MLEAC=1;MLEAF=0.500;MQ=29.47;MQ0=1;MQRankSum=0.854;QD=8.80;ReadPosRankSum=-1.367;SB=-2.690e+02 GT:AD:DP:GQ:PL 0/1:42,68:110:99:998,0,294 chrXII 789140 . A G 1387 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.9504;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=1;QD=13.60;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1420,162,0 chrXII 789146 . T G 674.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.787;DP=108;Dels=0.00;FS=6.771;HaplotypeScore=44.4109;MLEAC=1;MLEAF=0.500;MQ=31.33;MQ0=1;MQRankSum=-0.552;QD=6.24;ReadPosRankSum=-0.103;SB=-2.660e+02 GT:AD:DP:GQ:PL 0/1:52,56:108:99:704,0,461 chrXII 789151 . C T 1152.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.556;DP=115;Dels=0.00;FS=26.049;HaplotypeScore=63.6066;MLEAC=1;MLEAF=0.500;MQ=31.19;MQ0=1;MQRankSum=-1.158;QD=10.02;ReadPosRankSum=5.433;SB=-3.970e+02 GT:AD:DP:GQ:PL 0/1:29,86:115:99:1182,0,111 chrXII 789152 . A G 1127.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=120;Dels=0.00;FS=28.320;HaplotypeScore=66.2465;MLEAC=1;MLEAF=0.500;MQ=31.39;MQ0=1;MQRankSum=-1.723;QD=9.39;ReadPosRankSum=5.870;SB=-3.650e+02 GT:AD:DP:GQ:PL 0/1:31,89:120:99:1157,0,173 chrXII 789167 . T G 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.512;DP=193;Dels=0.00;FS=5.056;HaplotypeScore=72.5469;MLEAC=1;MLEAF=0.500;MQ=33.48;MQ0=1;MQRankSum=-0.376;QD=0.22;ReadPosRankSum=-1.302;SB=-2.860e+02 GT:AD:DP:GQ:PL 0/1:144,48:193:72:72,0,1450 chrXII 789172 . C T 781.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.385;DP=192;Dels=0.00;FS=55.161;HaplotypeScore=72.5469;MLEAC=1;MLEAF=0.500;MQ=35.25;MQ0=1;MQRankSum=2.105;QD=4.07;ReadPosRankSum=-0.287;SB=-6.300e+02 GT:AD:DP:GQ:PL 0/1:100,92:192:99:811,0,794 chrXII 789173 . A G 867.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.451;DP=192;Dels=0.00;FS=19.649;HaplotypeScore=72.5469;MLEAC=1;MLEAF=0.500;MQ=35.25;MQ0=1;MQRankSum=2.247;QD=4.52;ReadPosRankSum=3.397;SB=-1.107e+03 GT:AD:DP:GQ:PL 0/1:75,117:192:99:897,0,661 chrXII 789193 . C T 293.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.333;DP=184;Dels=0.00;FS=3.407;HaplotypeScore=109.5581;MLEAC=1;MLEAF=0.500;MQ=39.54;MQ0=1;MQRankSum=-5.364;QD=1.59;ReadPosRankSum=2.242;SB=-5.840e+02 GT:AD:DP:GQ:PL 0/1:99,85:184:99:323,0,1335 chrXII 789194 . A G 252.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DP=186;Dels=0.00;FS=5.278;HaplotypeScore=109.5581;MLEAC=1;MLEAF=0.500;MQ=39.44;MQ0=1;MQRankSum=-4.249;QD=1.35;ReadPosRankSum=3.304;SB=-5.350e+02 GT:AD:DP:GQ:PL 0/1:103,83:186:99:282,0,1352 chrXII 789214 . C T 1508.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.849;DP=224;Dels=0.00;FS=8.955;HaplotypeScore=83.8261;MLEAC=1;MLEAF=0.500;MQ=37.92;MQ0=0;MQRankSum=3.878;QD=6.73;ReadPosRankSum=-0.017;SB=-1.078e+03 GT:AD:DP:GQ:PL 0/1:105,119:224:99:1538,0,264 chrXII 789215 . A G 1459.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.283;DP=225;Dels=0.00;FS=11.343;HaplotypeScore=83.8261;MLEAC=1;MLEAF=0.500;MQ=37.89;MQ0=0;MQRankSum=4.045;QD=6.48;ReadPosRankSum=0.282;SB=-1.065e+03 GT:AD:DP:GQ:PL 0/1:105,120:225:99:1489,0,283 chrXII 789230 . G T 375.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.307;DP=240;Dels=0.00;FS=15.158;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=37.36;MQ0=0;MQRankSum=-3.408;QD=1.56;ReadPosRankSum=-4.120;SB=-6.120e+02 GT:AD:DP:GQ:PL 0/1:123,117:240:99:405,0,1418 chrXII 789259 . A G 454.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.359;DP=172;Dels=0.00;FS=10.407;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=36.29;MQ0=0;MQRankSum=-5.930;QD=2.64;ReadPosRankSum=3.402;SB=-4.050e+02 GT:AD:DP:GQ:PL 0/1:73,99:172:99:484,0,898 chrXII 789264 . T C 393.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.373;DP=145;Dels=0.00;FS=1.433;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=35.19;MQ0=0;MQRankSum=-4.290;QD=2.71;ReadPosRankSum=9.050;SB=-4.180e+02 GT:AD:DP:GQ:PL 0/1:62,83:145:99:423,0,674 chrXII 789266 . G A 417.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.373;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=34.82;MQ0=0;MQRankSum=-4.726;QD=2.92;ReadPosRankSum=9.692;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:59,84:143:99:447,0,649 chrXII 789268 . G A 422.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.825;DP=141;Dels=0.00;FS=0.684;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=34.34;MQ0=0;MQRankSum=-3.502;QD=2.99;ReadPosRankSum=9.665;SB=-4.880e+02 GT:AD:DP:GQ:PL 0/1:57,84:141:99:452,0,595 chrXII 789269 . G A 457.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=34.34;MQ0=0;MQRankSum=-2.993;QD=3.24;ReadPosRankSum=8.886;SB=-5.420e+02 GT:AD:DP:GQ:PL 0/1:52,87:141:99:487,0,485 chrXII 789385 . T A 4604.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.6497;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.84;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4604,534,0 chrXII 790301 . T C 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.518;QD=23.16;ReadPosRankSum=1.589;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2280,255,0 chrXII 790397 . G T 3204 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3237,360,0 chrXII 790484 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.09;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3335,372,0 chrXII 790500 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0092;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.47;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3413,390,0 chrXII 790747 . C T 7753.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=21.9736;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.00;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:7753,841,0 chrXII 791350 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.44;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4116,453,0 chrXII 791497 . G T 5213.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.48;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5213,576,0 chrXII 791731 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3881,426,0 chrXII 792203 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.70;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1858,210,0 chrXII 792265 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.84;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2017,216,0 chrXII 792277 . C G 2002 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3103;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.37;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2035,225,0 chrXII 792366 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=24.65;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3353,366,0 chrXII 792417 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=24.58;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3515,378,0 chrXII 792538 . C G 4169.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=23.42;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4169,465,0 chrXII 792556 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=23.76;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3825,426,0 chrXII 792571 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=0;QD=21.25;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3136,363,0 chrXII 792585 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;MQRankSum=-1.650;QD=19.17;ReadPosRankSum=1.650;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2467,282,0 chrXII 792600 . G C 1780 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=17.28;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1813,219,0 chrXII 792601 . T G 1897 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=9.031;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;MQRankSum=0.833;QD=18.24;ReadPosRankSum=1.699;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1930,219,0 chrXII 792605 . T C 1945 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=8.751;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=-1.732;QD=18.52;ReadPosRankSum=1.699;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1978,228,0 chrXII 792606 . A C 1822 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=17.03;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1855,225,0 chrXII 792641 . C A 2182 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=14.26;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2215,240,0 chrXII 792644 . G T 2385 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;QD=15.79;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2418,267,0 chrXII 792691 . C G 3314.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=17.63;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3314,381,0 chrXII 792702 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=17.61;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3381,375,0 chrXII 792737 . A T 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.513;DP=159;Dels=0.00;FS=5.735;HaplotypeScore=10.8323;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;MQRankSum=-0.817;QD=14.44;ReadPosRankSum=2.272;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:2329,267,0 chrXII 792747 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=12.75;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:1754,201,0 chrXII 792764 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=11.07;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1118,123,0 chrXII 792789 . A T 721 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=0;QD=10.60;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:84:754,84,0 chrXII 792807 . T C 804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=75;Dels=0.00;FS=5.309;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;MQRankSum=-1.780;QD=10.72;ReadPosRankSum=3.336;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:99:837,99,0 chrXII 792826 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=15.52;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1383,156,0 chrXII 792875 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=21.19;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2533,291,0 chrXII 792972 . T C 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=4.309;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;MQRankSum=-0.993;QD=23.61;ReadPosRankSum=1.693;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2134,240,0 chrXII 793009 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1755;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=23.72;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1717,186,0 chrXII 793142 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=21.29;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1949,207,0 chrXII 793144 . T A 1815 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.95;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1848,207,0 chrXII 793312 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=23.88;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3295,369,0 chrXII 793421 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=25.66;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4440,480,0 chrXII 793518 . A T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.9528;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=22.52;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4121,468,0 chrXII 793539 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=21.36;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3525,399,0 chrXII 793555 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=20.07;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3164,366,0 chrXII 793558 . A G 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-0.153;QD=19.77;ReadPosRankSum=1.710;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3157,372,0 chrXII 793648 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=16.76;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2598,279,0 chrXII 793653 . T C 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=8.530;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;MQRankSum=-1.019;QD=15.87;ReadPosRankSum=2.416;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2350,264,0 chrXII 793664 . A G 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;MQRankSum=-1.614;QD=14.99;ReadPosRankSum=1.685;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2236,252,0 chrXII 793665 . A T 2174 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=14.99;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2207,255,0 chrXII 793681 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=14.41;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2238,252,0 chrXII 793689 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=12.88;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2017,243,0 chrXII 793695 . A G 2018 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=13.02;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2051,240,0 chrXII 793713 . C G 1548 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=12.29;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1581,189,0 chrXII 793723 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=11.59;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1470,174,0 chrXII 793732 . G C 1408 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=12.35;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1441,171,0 chrXII 793757 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=37.38;MQ0=0;QD=15.11;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:1755,204,0 chrXII 793796 . G T 2745 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=22.87;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2778,300,0 chrXII 793903 . G T 1892 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=23.07;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1925,207,0 chrXII 794003 . T G 2109 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=18.83;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2142,246,0 chrXII 794074 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=92;Dels=0.03;FS=3.058;HaplotypeScore=14.8759;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.014;QD=15.70;ReadPosRankSum=2.394;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1477,165,0 chrXII 794238 . T A 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.824;QD=23.50;ReadPosRankSum=1.698;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2454,270,0 chrXII 794309 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=2.729;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.149;QD=24.96;ReadPosRankSum=2.415;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3495,393,0 chrXII 794427 . T A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.83;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4121,447,0 chrXII 794440 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=23.82;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3859,417,0 chrXII 794638 . T C 2708 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0612;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.96;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2741,306,0 chrXII 795036 . C A 2811 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.82;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2844,318,0 chrXII 795312 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.40;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1982,216,0 chrXII 795919 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.21;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2676,294,0 chrXII 795999 . A G 3027 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.76;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3060,336,0 chrXII 796025 . A T 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=2.748;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.368;QD=22.89;ReadPosRankSum=2.408;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2711,291,0 chrXII 796042 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=22.20;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2475,264,0 chrXII 796074 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.43;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1673,186,0 chrXII 796093 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.06;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1577,171,0 chrXII 796132 . T A 1661 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.45;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1694,183,0 chrXII 796413 . T A 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4678;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.774;QD=19.30;ReadPosRankSum=2.415;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2774,303,0 chrXII 796574 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.611;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.978;QD=20.61;ReadPosRankSum=1.709;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3083,348,0 chrXII 796621 . A T 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.354;QD=22.22;ReadPosRankSum=1.673;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3911,429,0 chrXII 796695 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.91;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3366,375,0 chrXII 796703 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.44;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3345,357,0 chrXII 796741 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.635;QD=18.70;ReadPosRankSum=1.659;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2726,321,0 chrXII 796778 . G C 2454 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=19.95;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2487,276,0 chrXII 796782 . C T 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.810;DP=124;Dels=0.00;FS=3.375;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=-0.391;QD=19.10;ReadPosRankSum=-0.615;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2402,247,0 chrXII 796798 . A T 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.163;QD=19.67;ReadPosRankSum=2.065;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2551,279,0 chrXII 796851 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.99;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3409,369,0 chrXII 797166 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.62;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3378,366,0 chrXII 797260 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=6.436;HaplotypeScore=146.2812;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.450;QD=17.85;ReadPosRankSum=2.404;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2907,333,0 chrXII 797508 . T A 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=211;Dels=0.00;FS=10.137;HaplotypeScore=9.1349;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=1.263;QD=22.95;ReadPosRankSum=2.948;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4843,528,0 chrXII 797627 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.22;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3888,420,0 chrXII 797757 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.1594;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=19.22;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2378,261,0 chrXII 797945 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.26;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2459,267,0 chrXII 797990 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=18.43;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1765,195,0 chrXII 797996 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=20.13;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1764,189,0 chrXII 798014 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=93;Dels=0.00;FS=3.106;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.452;QD=19.32;ReadPosRankSum=1.431;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1830,188,0 chrXII 798050 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.66;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1954,216,0 chrXII 798281 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.82;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2999,321,0 chrXII 798433 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.57;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3764,414,0 chrXII 798476 . C A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.66;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3601,387,0 chrXII 798538 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.58;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3613,393,0 chrXII 798594 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.01;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3889,441,0 chrXII 798683 . A C 4079.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.93;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4079,465,0 chrXII 798735 . C T 4660.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.0984;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.40;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4660,501,0 chrXII 798842 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6225;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.10;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3812,429,0 chrXII 799085 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.55;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4266,477,0 chrXII 799107 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.01;FS=0.000;HaplotypeScore=2.8757;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.09;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4085,441,0 chrXII 799110 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.03;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4072,468,0 chrXII 799247 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=181;Dels=0.00;FS=2.881;HaplotypeScore=16.1247;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.020;QD=23.36;ReadPosRankSum=2.381;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4228,468,0 chrXII 799388 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.4730;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.89;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4440,489,0 chrXII 799490 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4005,438,0 chrXII 799628 . A T 2692 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2725,294,0 chrXII 799693 . A C 2579 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2612,297,0 chrXII 799947 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.2347;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.43;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3008,321,0 chrXII 800117 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.13;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3342,375,0 chrXII 800195 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.05;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2730,300,0 chrXII 800240 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=3.042;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.040;QD=22.82;ReadPosRankSum=2.359;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3137,348,0 chrXII 800495 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.44;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3174,363,0 chrXII 800645 . C A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6372;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.12;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3538,402,0 chrXII 800672 . T G 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.573;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.562;QD=23.30;ReadPosRankSum=1.709;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3471,399,0 chrXII 801257 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=3.252;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.287;QD=22.23;ReadPosRankSum=1.709;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3335,381,0 chrXII 801709 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.86;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3297,363,0 chrXII 801710 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.02;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3229,366,0 chrXII 802287 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.32;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3103,342,0 chrXII 802510 . T A 775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=15.315;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=-1.223;QD=11.40;ReadPosRankSum=1.579;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,67:68:90:808,90,0 chrXII 802668 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2489,279,0 chrXII 802767 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1732,198,0 chrXII 803022 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=190;Dels=0.00;FS=10.497;HaplotypeScore=13.4531;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.739;QD=20.44;ReadPosRankSum=2.910;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:3884,459,0 chrXII 803175 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.99;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4093,456,0 chrXII 803215 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=3.832;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.279;QD=19.26;ReadPosRankSum=1.533;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3409,384,0 chrXII 803271 . T G 4285.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.5608;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.42;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4285,483,0 chrXII 803492 . G A 5599.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.45;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5599,609,0 chrXII 803510 . G T 5664.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=6.4688;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.98;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5664,624,0 chrXII 803546 . T C 5592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=262;Dels=0.00;FS=8.833;HaplotypeScore=24.0466;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=2.664;QD=21.34;ReadPosRankSum=3.293;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:4,256:262:99:5592,630,0 chrXII 803722 . G C 6515.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=22.2819;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.94;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:6515,738,0 chrXII 803754 . T C 6241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=314;Dels=0.00;FS=5.909;HaplotypeScore=16.2600;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.508;QD=19.88;ReadPosRankSum=2.978;SB=-3.519e+03 GT:AD:DP:GQ:PL 1/1:3,309:314:99:6241,717,0 chrXII 803775 . A C 6157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=350;Dels=0.00;FS=6.234;HaplotypeScore=13.0407;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.508;QD=17.59;ReadPosRankSum=2.435;SB=-3.986e+03 GT:AD:DP:GQ:PL 1/1:2,348:350:99:6157,725,0 chrXII 803829 . T A 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.038;DP=347;Dels=0.00;FS=47.436;HaplotypeScore=67.9883;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=2.403;QD=13.41;ReadPosRankSum=4.528;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:16,327:346:99:4653,498,0 chrXII 803865 . G A 6557.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=18.6497;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.51;SB=-3.607e+03 GT:AD:DP:GQ:PL 1/1:0,334:336:99:6557,717,0 chrXII 803918 . C T 6823.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=23.5392;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.26;SB=-3.684e+03 GT:AD:DP:GQ:PL 1/1:0,319:321:99:6823,762,0 chrXII 803961 . T C 7278.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=21.6505;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.34;SB=-4.005e+03 GT:AD:DP:GQ:PL 1/1:0,340:341:99:7278,848,0 chrXII 804054 . C G 4679.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=16.6348;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.26;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4679,528,0 chrXII 804069 . A T 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=232;Dels=0.00;FS=2.966;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.069;QD=19.88;ReadPosRankSum=2.344;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:2,230:232:99:4612,513,0 chrXII 804204 . A G 4744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=25.1284;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.133;QD=19.93;ReadPosRankSum=1.703;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:4744,534,0 chrXII 804259 . C A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.36;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3828,423,0 chrXII 804368 . T A 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=195;Dels=0.00;FS=2.929;HaplotypeScore=22.1447;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.753;QD=22.07;ReadPosRankSum=2.374;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4304,471,0 chrXII 804683 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.06;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:3888,429,0 chrXII 804772 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=30.5448;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.04;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:3970,429,0 chrXII 804978 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=189;Dels=0.00;FS=2.994;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.960;QD=22.45;ReadPosRankSum=2.410;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4243,480,0 chrXII 805077 . T A 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.01;FS=6.223;HaplotypeScore=16.5698;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.437;QD=19.24;ReadPosRankSum=1.712;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3405,378,0 chrXII 805190 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=165;Dels=0.00;FS=2.798;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.914;QD=21.30;ReadPosRankSum=2.420;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3514,393,0 chrXII 805307 . A C 2546 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.4435;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.05;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2579,291,0 chrXII 805325 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.50;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2472,270,0 chrXII 805437 . T G 3027 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.73;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3060,354,0 chrXII 805452 . T A 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.670;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.942;QD=22.24;ReadPosRankSum=1.686;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3314,348,0 chrXII 805581 . A T 2854 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.83;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2887,309,0 chrXII 805615 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9120;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.07;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2963,318,0 chrXII 805654 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=86.7766;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.96;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2650,294,0 chrXII 805710 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.69;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2375,270,0 chrXII 805740 . A G 2349 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.75;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2382,273,0 chrXII 805792 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.30;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2779,303,0 chrXII 805896 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.50;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2980,354,0 chrXII 806702 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.3783;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.37;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2187,249,0 chrXII 806915 . T A 1531 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=23.20;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1564,177,0 chrXII 806928 . G C 1558 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=19.72;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1591,186,0 chrXII 806948 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=21.91;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1895,210,0 chrXII 806972 . T C 1394 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=18.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1427,171,0 chrXII 807002 . T G 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.687;QD=17.35;ReadPosRankSum=1.622;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1126,138,0 chrXII 807114 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.80;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2257,252,0 chrXII 807151 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=20.21;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2539,282,0 chrXII 807160 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=0.436;QD=19.27;ReadPosRankSum=1.706;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2558,291,0 chrXII 807178 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.71;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2536,279,0 chrXII 807344 . C A 1781 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.71;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1814,198,0 chrXII 807496 . A G 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=3.665;HaplotypeScore=8.2091;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.173;QD=21.90;ReadPosRankSum=1.697;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2223,255,0 chrXII 807920 . A C 2952 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.6863;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.87;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2985,336,0 chrXII 808098 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.02;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2896,318,0 chrXII 808209 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3676;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.36;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3605,387,0 chrXII 808329 . A C 2553 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.59;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2586,294,0 chrXII 808557 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.25;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2544,288,0 chrXII 808607 . G T 3155 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.3807;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3188,348,0 chrXII 808708 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4338,512,0 chrXII 809043 . A T 5407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=236;Dels=0.00;FS=5.982;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.502;QD=22.91;ReadPosRankSum=2.936;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:3,233:236:99:5407,612,0 chrXII 809105 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.5510;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.323;QD=20.75;ReadPosRankSum=1.713;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3673,401,0 chrXII 809119 . G C 3518.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.88;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3518,405,0 chrXII 809221 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.006;QD=22.37;ReadPosRankSum=2.399;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4362,492,0 chrXII 809330 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.76;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2075,228,0 chrXII 809789 . A G 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=6.767;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.055;QD=23.14;ReadPosRankSum=1.696;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2231,264,0 chrXII 809989 . G A 5844.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.0220;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.74;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5844,622,0 chrXII 810163 . T A 5239.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.8999;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.49;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5239,565,0 chrXII 810333 . G C 3568.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.7722;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.16;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,171:177:99:3568,396,0 chrXII 810479 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.76;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4373,483,0 chrXII 810527 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.79;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3350,372,0 chrXII 810599 . T A 4451.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.01;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4451,489,0 chrXII 810821 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.9844;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.05;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3987,450,0 chrXII 811301 . C T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3788,414,0 chrXII 814012 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.956;QD=18.99;ReadPosRankSum=1.712;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3362,378,0 chrXII 814017 . G T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.04;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3428,369,0 chrXII 815093 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=4.559;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=1.039;QD=20.65;ReadPosRankSum=1.694;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3717,423,0 chrXII 815108 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.66;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3306,372,0 chrXII 815117 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7841;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.49;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3442,369,0 chrXII 815222 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=10.333;HaplotypeScore=16.1255;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.991;QD=21.99;ReadPosRankSum=2.319;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3298,360,0 chrXII 815324 . C T 4035.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=24.16;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4035,438,0 chrXII 815357 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=20.23;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3250,369,0 chrXII 815365 . C G 3365.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=21.99;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3365,372,0 chrXII 815475 . A G 2441 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;MQRankSum=-1.308;QD=16.61;ReadPosRankSum=1.709;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2474,285,0 chrXII 815477 . A T 2613 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=18.02;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2646,282,0 chrXII 815480 . C A 2573 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=16.18;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2606,282,0 chrXII 815496 . G A 1973 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.2640;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;MQRankSum=-1.212;QD=13.99;ReadPosRankSum=1.113;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2006,219,0 chrXII 815497 . A C 1875 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=140;Dels=0.00;FS=2.869;HaplotypeScore=5.2640;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-0.518;QD=13.39;ReadPosRankSum=1.501;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:1908,219,0 chrXII 815498 . T A 1995 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=2.811;HaplotypeScore=6.0526;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;MQRankSum=-1.399;QD=14.35;ReadPosRankSum=1.559;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2028,225,0 chrXII 815526 . A G 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;MQRankSum=-0.078;QD=16.39;ReadPosRankSum=1.710;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2574,285,0 chrXII 815554 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=17.78;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2558,276,0 chrXII 815763 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=22.98;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1527,165,0 chrXII 815769 . T G 1447 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=22.97;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1480,168,0 chrXII 815784 . T G 1468 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=22.58;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1501,171,0 chrXII 815890 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=16.47;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1367,150,0 chrXII 815897 . C T 1320 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=54.4503;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=16.71;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1353,147,0 chrXII 815901 . T C 1225 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=59.1871;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=1.141;QD=14.94;ReadPosRankSum=1.563;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1258,144,0 chrXII 815907 . T C 189.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;MQRankSum=-1.531;QD=2.42;ReadPosRankSum=1.531;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:1,16:78:27:222,27,0 chrXII 815940 . C T 913 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=12.86;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:946,102,0 chrXII 815987 . G A 979 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=16.88;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1012,111,0 chrXII 815995 . C G 1032 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=17.79;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1065,117,0 chrXII 816028 . A G 1252 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=19.56;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1285,153,0 chrXII 816049 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=0;QD=17.43;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1358,156,0 chrXII 816058 . C T 1333 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=16.26;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1366,156,0 chrXII 816068 . A G 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;MQRankSum=-1.576;QD=16.72;ReadPosRankSum=1.693;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1521,177,0 chrXII 816162 . T C 2247 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=22.70;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2280,261,0 chrXII 816236 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.9775;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=23.16;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2395,264,0 chrXII 816279 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=22.14;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2646,288,0 chrXII 816285 . T C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=0.301;QD=20.13;ReadPosRankSum=1.703;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2469,291,0 chrXII 816323 . C G 2722 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.27;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2755,312,0 chrXII 816399 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.89;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3192,357,0 chrXII 816420 . A C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=142;Dels=0.00;FS=7.380;HaplotypeScore=4.0480;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.238;QD=20.08;ReadPosRankSum=2.242;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2884,336,0 chrXII 816603 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1395;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.66;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3738,402,0 chrXII 816648 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.04;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3592,420,0 chrXII 816720 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.19;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3021,330,0 chrXII 816966 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.60;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3847,420,0 chrXII 816978 . T A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.68;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3674,399,0 chrXII 817044 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.010;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.554;QD=20.90;ReadPosRankSum=1.686;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3189,354,0 chrXII 817067 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.614;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.170;QD=22.46;ReadPosRankSum=1.687;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3482,381,0 chrXII 817116 . A G 2985 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.59;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3018,351,0 chrXII 817183 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=133;Dels=0.00;FS=3.023;HaplotypeScore=7.5413;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.219;QD=17.53;ReadPosRankSum=2.412;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,127:133:99:2365,264,0 chrXII 817186 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=16.69;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2269,261,0 chrXII 817279 . A G 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.4812;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.537;QD=21.70;ReadPosRankSum=1.667;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3494,393,0 chrXII 817345 . T A 2700 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.85;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2733,309,0 chrXII 817376 . T A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.24;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3695,399,0 chrXII 817463 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.37;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2598,291,0 chrXII 817525 . G C 2268 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.22;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2301,264,0 chrXII 817535 . A C 2215 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.93;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2248,261,0 chrXII 817587 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.45;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2328,264,0 chrXII 817684 . G C 1476 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=21.71;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1509,177,0 chrXII 817710 . A C 1268 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=18.93;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1301,153,0 chrXII 817755 . T A 1318 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=20.92;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1351,150,0 chrXII 817769 . A T 1210 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=23.73;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1243,135,0 chrXII 817814 . A T 659 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=19.97;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:692,78,0 chrXII 817850 . C G 652 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=15.16;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:78:685,78,0 chrXII 817851 . G A 679 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=16.56;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:712,78,0 chrXII 817853 . C A 671 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=16.37;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:704,78,0 chrXII 817863 . G T 784 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=13.52;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:817,90,0 chrXII 817870 . A G 790 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=13.62;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:823,96,0 chrXII 817876 . G A 859 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=14.32;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:892,99,0 chrXII 817907 . T C 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;MQRankSum=0.208;QD=11.95;ReadPosRankSum=2.386;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:953,111,0 chrXII 817938 . C T 780 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=11.47;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:90:813,90,0 chrXII 817946 . G A 609 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=11.07;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:642,72,0 chrXII 817947 . C T 632 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=11.49;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:665,72,0 chrXII 817948 . A C 604 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=10.98;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:637,72,0 chrXII 817973 . T C 470 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=10.68;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:60:503,60,0 chrXII 817981 . A G 460 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=11.79;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:493,54,0 chrXII 817998 . C A 381 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;QD=13.14;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:45:414,45,0 chrXII 818004 . A G 271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=3.358;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;MQRankSum=0.533;QD=10.42;ReadPosRankSum=1.600;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:36:304,36,0 chrXII 818018 . T C 69.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;QD=4.97;SB=-1.045e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:12:102,12,0 chrXII 818019 . G A 70.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;QD=5.04;SB=-1.145e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:12:103,12,0 chrXII 818041 . C T 568 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=15.78;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:72:601,72,0 chrXII 818046 . C A 847 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=20.66;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:880,96,0 chrXII 818092 . A G 1658 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=20.22;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1691,192,0 chrXII 818185 . A G 552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=3;MQRankSum=1.436;QD=14.53;ReadPosRankSum=1.634;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:69:585,69,0 chrXII 818207 . T A 91.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=22;Dels=0.00;FS=3.140;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.23;MQ0=5;MQRankSum=0.373;QD=4.15;ReadPosRankSum=2.162;SB=-7.030e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:15:124,15,0 chrXII 818228 . T C 73.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.16;MQ0=8;MQRankSum=-0.747;QD=4.59;ReadPosRankSum=0.747;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,15:16:12:106,12,0 chrXII 818235 . C T 104.26 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.79;MQ0=6;QD=5.79;SB=-5.376e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:137,15,0 chrXII 818285 . C T 697 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=4;QD=15.84;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:730,78,0 chrXII 818366 . C T 403 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=16.12;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:48:436,48,0 chrXII 818384 . G A 161.06 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=13.42;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:194,21,0 chrXII 818385 . G A 158.06 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=13.17;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:191,21,0 chrXII 818386 . T G 157.06 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=13.09;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:190,21,0 chrXII 818390 . A T 161.06 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=13.42;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:194,21,0 chrXII 818447 . C T 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=0;QD=9.63;SB=-2.711e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:158,18,0 chrXII 818452 . A G 148.06 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;QD=9.25;SB=-2.407e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:21:181,21,0 chrXII 818454 . A G 154.06 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;QD=9.63;SB=-2.607e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:21:187,21,0 chrXII 818534 . G T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.52;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:57,6,0 chrXII 818542 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.32;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:51,6,0 chrXII 818562 . T C 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.156;QD=2.55;ReadPosRankSum=1.542;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:9:78,9,0 chrXII 818582 . A C 176.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;QD=12.57;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:209,24,0 chrXII 818588 . C A 217.01 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=10.85;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:250,27,0 chrXII 818697 . A C 1733 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=22.80;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1766,198,0 chrXII 818717 . A C 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=6.842;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;MQRankSum=0.776;QD=21.62;ReadPosRankSum=1.613;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1914,216,0 chrXII 818735 . C A 1545 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=82.1514;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=17.36;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1578,186,0 chrXII 818791 . A C 584 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=30.5338;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=11.92;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:72:617,72,0 chrXII 818807 . T C 199.01 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=5.85;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:232,27,0 chrXII 818808 . C T 202.01 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=5.94;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:235,27,0 chrXII 818811 . G T 241 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=6.18;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:30:274,30,0 chrXII 818817 . G A 343 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=9.80;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:42:376,42,0 chrXII 818826 . T G 455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=44;Dels=0.00;FS=4.873;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;MQRankSum=-1.491;QD=10.34;ReadPosRankSum=1.491;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:57:488,57,0 chrXII 818837 . C T 784 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=13.29;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:817,93,0 chrXII 818996 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=13.69;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1511,171,0 chrXII 818997 . C A 1418 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;QD=13.38;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1451,171,0 chrXII 819017 . T A 993 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=10.24;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1026,120,0 chrXII 819018 . A G 1047 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=10.79;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1080,123,0 chrXII 819032 . T G 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.224;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;MQRankSum=-1.573;QD=8.54;ReadPosRankSum=0.365;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:92:964,92,0 chrXII 819035 . C T 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.986;DP=121;Dels=0.00;FS=4.453;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.38;MQ0=0;MQRankSum=-1.962;QD=7.89;ReadPosRankSum=1.149;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:76:988,76,0 chrXII 819079 . T C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.026;DP=162;Dels=0.00;FS=3.728;HaplotypeScore=3.8405;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-1.236;QD=16.10;ReadPosRankSum=2.397;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:7,155:162:99:2642,300,0 chrXII 819099 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.323;QD=20.94;ReadPosRankSum=0.481;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3602,349,0 chrXII 819282 . T A 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=189;Dels=0.00;FS=7.177;HaplotypeScore=9.0742;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.396;QD=23.31;ReadPosRankSum=2.372;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4405,489,0 chrXII 819555 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.55;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3050,345,0 chrXII 819579 . T C 2475 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.45;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2508,288,0 chrXII 819611 . T G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=108;Dels=0.00;FS=7.898;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.894;QD=19.73;ReadPosRankSum=2.380;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:2,104:108:99:2164,246,0 chrXII 819643 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.00;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2343,258,0 chrXII 819681 . A G 2762 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.31;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2795,309,0 chrXII 819713 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.2913;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.96;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2991,330,0 chrXII 819720 . A G 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.7285;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.450;QD=17.13;ReadPosRankSum=1.642;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:2722,312,0 chrXII 819742 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.285;QD=19.30;ReadPosRankSum=1.710;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3082,342,0 chrXII 819834 . C G 2880 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=17.14;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2913,345,0 chrXII 819836 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=5.521;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=0.232;QD=18.48;ReadPosRankSum=1.711;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3082,342,0 chrXII 819851 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=15.55;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2909,333,0 chrXII 819854 . T C 2799 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=14.97;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2832,330,0 chrXII 820286 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.74;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2772,300,0 chrXII 820297 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8864;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.84;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2235,252,0 chrXII 820424 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2771;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.38;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3077,336,0 chrXII 820477 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.89;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2835,306,0 chrXII 820505 . G T 2923 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.03;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2956,321,0 chrXII 820615 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.58;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3155,342,0 chrXII 820636 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.12;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2688,309,0 chrXII 820804 . A G 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=197;Dels=0.00;FS=6.087;HaplotypeScore=19.7605;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.280;QD=23.32;ReadPosRankSum=2.412;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4595,516,0 chrXII 820873 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.75;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3614,399,0 chrXII 820890 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.50;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3313,369,0 chrXII 821230 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.82;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3156,357,0 chrXII 821269 . A G 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.410;QD=19.66;ReadPosRankSum=1.653;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2609,294,0 chrXII 821272 . A G 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=124;Dels=0.00;FS=5.123;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.629;QD=19.47;ReadPosRankSum=3.373;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2447,279,0 chrXII 821638 . C A 3060 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3093,345,0 chrXII 821725 . A G 2820 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.5273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2853,321,0 chrXII 821815 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3280,354,0 chrXII 822030 . T G 2129 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.18;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2162,246,0 chrXII 822252 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.89;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2493,270,0 chrXII 822430 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=3.857;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.901;QD=23.69;ReadPosRankSum=1.653;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4146,462,0 chrXII 822539 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3884,426,0 chrXII 822697 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.29;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3131,345,0 chrXII 822768 . A C 2974 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.42;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3007,345,0 chrXII 822847 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.39;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2835,315,0 chrXII 823939 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2883,315,0 chrXII 824872 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.9757;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.22;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3629,414,0 chrXII 824977 . G A 4770.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.50;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4770,519,0 chrXII 825145 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=3.916;HaplotypeScore=14.1917;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.060;QD=22.28;ReadPosRankSum=1.691;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3788,420,0 chrXII 825694 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=3.575;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.929;QD=23.55;ReadPosRankSum=1.648;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3910,438,0 chrXII 826141 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=148;Dels=0.00;FS=9.482;HaplotypeScore=8.7079;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.259;QD=22.17;ReadPosRankSum=2.925;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3281,366,0 chrXII 826674 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=15.0229;MLEAC=2;MLEAF=1.00;MQ=61.23;MQ0=0;QD=23.50;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2783,306,0 chrXII 826808 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=23.04;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2314,252,0 chrXII 826973 . C A 2216 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2249,249,0 chrXII 827148 . A T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.01;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4097,447,0 chrXII 827173 . C T 5294.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.52;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5294,576,0 chrXII 827359 . T C 7008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=319;Dels=0.00;FS=3.108;HaplotypeScore=13.0816;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.501;QD=21.97;ReadPosRankSum=1.688;SB=-3.973e+03 GT:AD:DP:GQ:PL 1/1:1,314:319:99:7008,780,0 chrXII 827502 . A G 5642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=261;Dels=0.00;FS=6.038;HaplotypeScore=21.7197;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.273;QD=21.62;ReadPosRankSum=2.919;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:3,258:261:99:5642,636,0 chrXII 828017 . T G 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.8584;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.138;QD=17.88;ReadPosRankSum=1.548;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,225:229:99:4094,459,0 chrXII 828035 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.79;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4360,477,0 chrXII 828244 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=247;Dels=0.01;FS=19.818;HaplotypeScore=16.7660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-1.246;QD=19.84;ReadPosRankSum=3.368;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:4,240:245:99:4900,552,0 chrXII 828578 . G T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.1234;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=23.43;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3842,420,0 chrXII 828622 . T G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=4.861;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.530;QD=21.44;ReadPosRankSum=1.714;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4223,492,0 chrXII 828697 . C A 4380.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.35;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4380,471,0 chrXII 828855 . G A 4854.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.56;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4854,525,0 chrXII 828903 . C T 5532.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.86;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5532,609,0 chrXII 829405 . G A 57.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=3.38;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:90,12,0 chrXII 829431 . G A 482 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:60:515,60,0 chrXII 829513 . C T 3688.01 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3688,405,0 chrXII 829636 . A G 5625.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.2052;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.25;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5625,642,0 chrXII 829693 . G T 7629.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.61;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,308:310:99:7629,832,0 chrXII 829898 . G A 6057.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=23.8482;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.87;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6057,655,0 chrXII 830005 . G T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=19.5934;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.23;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4308,468,0 chrXII 830411 . A T 3986.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.27;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3986,438,0 chrXII 830462 . T C 2569 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.41;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2602,294,0 chrXII 830537 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.05;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3122,345,0 chrXII 830606 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.06;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2300,258,0 chrXII 830647 . G T 2553 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.4550;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.00;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2586,285,0 chrXII 830721 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.94;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3176,342,0 chrXII 830731 . A G 2698 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.99;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2731,324,0 chrXII 830945 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.55;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3450,372,0 chrXII 831007 . T C 4028.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.6980;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.15;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4028,462,0 chrXII 831036 . A T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.28;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3597,387,0 chrXII 831046 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.30;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3515,375,0 chrXII 831096 . A G 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.441;QD=17.74;ReadPosRankSum=1.706;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2357,264,0 chrXII 831136 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.7674;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2165,240,0 chrXII 832189 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2634,288,0 chrXII 833013 . C A 4777.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.6681;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.37;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4777,519,0 chrXII 833500 . T C 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.356;QD=22.61;ReadPosRankSum=1.682;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3153,366,0 chrXII 833865 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2767,300,0 chrXII 834053 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.94;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2022,228,0 chrXII 834108 . A G 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.343;QD=19.62;ReadPosRankSum=1.661;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1956,228,0 chrXII 834201 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.82;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2383,258,0 chrXII 834274 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.45;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2237,246,0 chrXII 834969 . C T 4496.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.5231;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.89;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:4496,492,0 chrXII 835157 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.24;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3270,357,0 chrXII 835410 . T A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.22;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3530,393,0 chrXII 835689 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=7.7790;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.47;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3643,408,0 chrXII 835692 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=2.7687;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.64;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3736,405,0 chrXII 835791 . T C 2883 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.84;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2916,333,0 chrXII 835800 . G T 2647 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.89;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2680,297,0 chrXII 836998 . G A 4745.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.09;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4745,534,0 chrXII 837516 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=4.12;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:65,9,0 chrXII 837543 . G A 292 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=12.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:24:39:325,39,0 chrXII 837595 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.56;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1873,207,0 chrXII 837805 . A G 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.083;QD=20.36;ReadPosRankSum=1.689;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1662,189,0 chrXII 837902 . T A 421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=3.245;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=61.13;MQ0=0;MQRankSum=-0.274;QD=22.16;ReadPosRankSum=1.369;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,18:19:51:454,51,0 chrXII 839086 . A G 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=235;Dels=0.00;FS=2.565;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.543;QD=21.09;ReadPosRankSum=2.927;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:4956,570,0 chrXII 839385 . A C 1921 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.2326;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.34;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1954,216,0 chrXII 839573 . C G 2814 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.16;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2847,344,0 chrXII 839654 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.699;QD=20.62;ReadPosRankSum=1.702;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2384,270,0 chrXII 839677 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.48;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2511,288,0 chrXII 839722 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.350;QD=21.82;ReadPosRankSum=1.711;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3557,402,0 chrXII 839783 . C G 2973 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.54;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3006,333,0 chrXII 839881 . G A 104.42 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;QD=0.96;SB=-1.417e+01 GT:AD:DP:GQ:PL 1/1:0,8:109:15:137,15,0 chrXII 840068 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=4.722;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.723;QD=19.68;ReadPosRankSum=1.692;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3444,405,0 chrXII 840073 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.38;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3607,399,0 chrXII 840217 . T C 3656.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.43;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3656,408,0 chrXII 840577 . T C 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=7.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.417;QD=20.21;ReadPosRankSum=2.384;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2317,264,0 chrXII 840682 . T C 2986 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7054;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.08;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3019,336,0 chrXII 840735 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.29;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2874,324,0 chrXII 840839 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.34;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2097,246,0 chrXII 841073 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=131;Dels=0.00;FS=4.064;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.826;QD=22.59;ReadPosRankSum=1.705;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2992,351,0 chrXII 841221 . A T 2575 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2608,288,0 chrXII 841354 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3331,363,0 chrXII 841900 . A G 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=3.043;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.637;QD=21.47;ReadPosRankSum=2.320;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2481,288,0 chrXII 842170 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=135;Dels=0.00;FS=2.880;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.486;QD=21.30;ReadPosRankSum=2.303;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2908,327,0 chrXII 842461 . T C 2710 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.36;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2743,309,0 chrXII 842770 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.23;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3611,405,0 chrXII 842843 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.28;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2896,315,0 chrXII 843343 . C T 4686.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.33;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4686,504,0 chrXII 843400 . T C 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=227;Dels=0.00;FS=6.005;HaplotypeScore=18.3610;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.155;QD=22.36;ReadPosRankSum=2.934;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:5076,588,0 chrXII 843685 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.5912;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.862;QD=21.90;ReadPosRankSum=2.717;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3373,393,0 chrXII 843952 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7574;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.28;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1818,213,0 chrXII 844038 . T C 2227 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.81;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2260,249,0 chrXII 844293 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.307;QD=24.11;ReadPosRankSum=1.641;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2781,318,0 chrXII 844641 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=202;Dels=0.00;FS=7.970;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.164;QD=21.55;ReadPosRankSum=2.413;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4354,495,0 chrXII 845436 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=146;Dels=0.00;FS=5.840;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.229;QD=22.47;ReadPosRankSum=2.868;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3280,372,0 chrXII 845925 . G C 1916 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1949,219,0 chrXII 846008 . T C 2180 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.49;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2213,249,0 chrXII 846071 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.91;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1895,207,0 chrXII 846079 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.12;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1744,186,0 chrXII 846141 . T C 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=115;Dels=0.00;FS=8.185;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.362;QD=21.38;ReadPosRankSum=3.380;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:4,110:115:99:2492,276,0 chrXII 846354 . C A 4902.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.68;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4902,552,0 chrXII 846486 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=169;Dels=0.00;FS=8.132;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.261;QD=20.12;ReadPosRankSum=2.360;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,163:169:99:3401,390,0 chrXII 846505 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.797;DP=164;Dels=0.00;FS=7.804;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.563;QD=20.14;ReadPosRankSum=3.777;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:5,158:164:99:3303,375,0 chrXII 846636 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.514;QD=21.14;ReadPosRankSum=1.705;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2781,321,0 chrXII 846812 . T C 2242 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2275,258,0 chrXII 848108 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.81;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2819,309,0 chrXII 848718 . A C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.09;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3261,366,0 chrXII 848996 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.02;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3531,384,0 chrXII 849160 . C A 2240 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.86;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2273,240,0 chrXII 849431 . T C 1484 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.51;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1517,168,0 chrXII 849445 . T G 1256 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.32;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1289,144,0 chrXII 849515 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1484,168,0 chrXII 849610 . C G 1155 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=61.57;MQ0=0;QD=20.62;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1188,138,0 chrXII 849950 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3426,372,0 chrXII 850042 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.65;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3602,390,0 chrXII 850054 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.09;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3147,348,0 chrXII 851089 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=171;Dels=0.00;FS=3.006;HaplotypeScore=17.9043;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.091;QD=22.00;ReadPosRankSum=2.334;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3762,426,0 chrXII 851512 . T A 2173 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2206,237,0 chrXII 851752 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.25;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2822,321,0 chrXII 852357 . G A 2234 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.03;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2267,246,0 chrXII 852843 . A C 2495 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2528,288,0 chrXII 853274 . C A 2253 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2286,246,0 chrXII 853358 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2076,234,0 chrXII 854293 . G C 2648 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.25;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2681,300,0 chrXII 854600 . T A 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=78;Dels=0.00;FS=3.064;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.711;QD=23.23;ReadPosRankSum=2.355;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1845,198,0 chrXII 854667 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3910;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.40;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2475,273,0 chrXII 854761 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.37;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3290,366,0 chrXII 854809 . A G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=6.021;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.841;QD=23.07;ReadPosRankSum=1.707;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3171,375,0 chrXII 854892 . G C 1698 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.95;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1731,195,0 chrXII 855144 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.04;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3504,390,0 chrXII 855154 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.618;QD=21.11;ReadPosRankSum=2.419;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3398,384,0 chrXII 855358 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=176;Dels=0.00;FS=9.108;HaplotypeScore=20.5999;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.495;QD=21.72;ReadPosRankSum=2.422;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3823,429,0 chrXII 855391 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.55;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2809,306,0 chrXII 855464 . T C 1719 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=13.54;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1752,195,0 chrXII 855467 . A C 1787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=13.85;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:1820,204,0 chrXII 855577 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6878;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=24.56;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2906,309,0 chrXII 855639 . T A 2324 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.2280;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=22.56;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2357,258,0 chrXII 855800 . A T 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=104;Dels=0.00;FS=5.761;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=-0.660;QD=21.96;ReadPosRankSum=2.913;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2317,261,0 chrXII 855816 . A G 2075 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=19.76;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2108,243,0 chrXII 855817 . A T 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-0.049;QD=20.50;ReadPosRankSum=1.666;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2185,243,0 chrXII 855913 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.34;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1548,168,0 chrXII 856024 . T G 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=90;Dels=0.00;FS=3.055;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=-0.983;QD=20.59;ReadPosRankSum=2.394;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1886,213,0 chrXII 856039 . G T 1815 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=18.91;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1848,198,0 chrXII 856042 . T A 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-0.590;QD=18.81;ReadPosRankSum=1.695;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1801,195,0 chrXII 856162 . T G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=139;Dels=0.00;FS=2.589;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.080;QD=21.94;ReadPosRankSum=2.803;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:3083,354,0 chrXII 856188 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.9322;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.48;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2933,315,0 chrXII 856280 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=158;Dels=0.00;FS=13.855;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.083;QD=23.68;ReadPosRankSum=3.370;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3742,411,0 chrXII 856603 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.56;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2469,279,0 chrXII 856753 . T C 1361 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=18.15;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1394,156,0 chrXII 857000 . T A 2609 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=22.89;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2642,282,0 chrXII 857015 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.62;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2652,294,0 chrXII 857203 . A G 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.502;QD=22.33;ReadPosRankSum=1.667;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2445,273,0 chrXII 857378 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.68;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1667,180,0 chrXII 857396 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.13;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1976,213,0 chrXII 857516 . A T 1783 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1816,201,0 chrXII 857630 . G C 2692 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.01;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2725,306,0 chrXII 857745 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2634,282,0 chrXII 857849 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.65;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2122,234,0 chrXII 857854 . G T 2011 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.45;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2044,222,0 chrXII 858427 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2869,318,0 chrXII 858635 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=160;Dels=0.00;FS=3.408;HaplotypeScore=10.7126;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.801;QD=21.80;ReadPosRankSum=1.710;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3488,402,0 chrXII 858802 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3561,405,0 chrXII 858994 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.7420;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.59;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3105,339,0 chrXII 859175 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.17;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3223,363,0 chrXII 859243 . T C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.061;DP=142;Dels=0.00;FS=24.027;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=-0.989;QD=22.01;ReadPosRankSum=4.001;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:6,136:142:99:3159,369,0 chrXII 859288 . A G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=131;Dels=0.00;FS=2.910;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.605;QD=21.88;ReadPosRankSum=2.412;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2899,327,0 chrXII 859351 . G T 2020 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.61;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2053,222,0 chrXII 859355 . C T 1963 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.66;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1996,216,0 chrXII 859566 . T G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.406;QD=22.23;ReadPosRankSum=1.703;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2634,291,0 chrXII 859630 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3393;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.78;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3791,417,0 chrXII 859785 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.253;QD=22.19;ReadPosRankSum=1.712;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3861,453,0 chrXII 860031 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.43;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2647,297,0 chrXII 860038 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.88;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2560,279,0 chrXII 860079 . T G 2838 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.02;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2871,321,0 chrXII 860959 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.23;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3694,390,0 chrXII 861841 . T C 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.00;FS=2.890;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.478;QD=24.20;ReadPosRankSum=2.368;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2985,330,0 chrXII 862412 . T C 1977 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.81;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2010,231,0 chrXII 862705 . C A 3153 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.45;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3186,360,0 chrXII 862719 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.48;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3452,369,0 chrXII 863259 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.72;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3408,390,0 chrXII 864291 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.180;DP=181;Dels=0.00;FS=9.079;HaplotypeScore=18.1254;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.945;QD=20.70;ReadPosRankSum=3.382;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:3747,435,0 chrXII 864999 . G T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3937,435,0 chrXII 865224 . G T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4147,456,0 chrXII 865455 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=151;Dels=0.00;FS=2.719;HaplotypeScore=7.3795;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.553;QD=23.29;ReadPosRankSum=2.384;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3517,393,0 chrXII 865557 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.19;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4059,444,0 chrXII 865736 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.303;QD=22.40;ReadPosRankSum=1.713;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3964,438,0 chrXII 865776 . C A 3149 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.72;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3182,360,0 chrXII 865827 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.92;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2784,315,0 chrXII 865848 . G C 2341 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.68;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2374,282,0 chrXII 866286 . C A 1986 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2019,231,0 chrXII 866370 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3071,336,0 chrXII 866995 . T C 171.03 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:24:204,24,0 chrXII 867118 . A T 331 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.47;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:42:364,42,0 chrXII 867171 . G A 1072 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.02;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1105,129,0 chrXII 867992 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=184;Dels=0.00;FS=7.714;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.848;QD=21.97;ReadPosRankSum=2.369;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4042,465,0 chrXII 868184 . T C 4623.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.2550;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.23;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4623,507,0 chrXII 868519 . T A 387 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=20.37;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:48:420,48,0 chrXII 868618 . G A 233 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.64;SB=-8.298e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:266,30,0 chrXII 869175 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.79;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3441,369,0 chrXII 869349 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.69;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3536,396,0 chrXII 869370 . G A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.01;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3739,420,0 chrXII 870189 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.06;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2548,282,0 chrXII 870213 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.47;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2566,285,0 chrXII 870633 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=5.506;HaplotypeScore=6.3818;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.628;QD=22.23;ReadPosRankSum=1.608;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3734,414,0 chrXII 870645 . T A 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=159;Dels=0.00;FS=2.556;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.713;QD=20.59;ReadPosRankSum=2.866;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3274,372,0 chrXII 870744 . G A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.63;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4581,501,0 chrXII 870985 . G A 5352.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=21.2515;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.58;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5352,588,0 chrXII 871504 . A G 5178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.581;DP=273;Dels=0.00;FS=11.067;HaplotypeScore=17.2131;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.861;QD=18.97;ReadPosRankSum=3.776;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:5,267:273:99:5178,611,0 chrXII 871825 . A C 4947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=259;Dels=0.00;FS=3.530;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.559;QD=19.10;ReadPosRankSum=1.665;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:1,257:259:99:4947,555,0 chrXII 872036 . T C 5621.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=16.6235;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.13;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5621,633,0 chrXII 872560 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.96;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3919,426,0 chrXII 873300 . T C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3351,381,0 chrXII 873628 . A C 655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.408;QD=19.26;ReadPosRankSum=1.631;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:78:688,78,0 chrXII 873725 . G C 1022 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.58;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1055,120,0 chrXII 873742 . T C 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.353;QD=17.12;ReadPosRankSum=1.685;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1283,147,0 chrXII 873872 . C G 2155 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2188,258,0 chrXII 873932 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.32;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3545,402,0 chrXII 874112 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4667,510,0 chrXII 874283 . T C 4407.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.26;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4407,501,0 chrXII 874433 . C T 4018.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.71;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4018,444,0 chrXII 874454 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.95;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3733,423,0 chrXII 874541 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3700,411,0 chrXII 874812 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.552;QD=21.30;ReadPosRankSum=1.710;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3323,369,0 chrXII 874848 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.680;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.507;QD=23.21;ReadPosRankSum=1.685;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3435,387,0 chrXII 875066 . G C 1828 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.87;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1861,216,0 chrXII 875363 . T C 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=3.811;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.492;QD=20.72;ReadPosRankSum=1.664;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2146,240,0 chrXII 875516 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.96;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1720,195,0 chrXII 875539 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=17.91;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1412,159,0 chrXII 875555 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=17.31;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1193,138,0 chrXII 875602 . T C 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.400;QD=18.83;ReadPosRankSum=1.679;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1257,141,0 chrXII 876120 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.76;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3564,390,0 chrXII 876714 . A G 4939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=229;Dels=0.00;FS=12.389;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.758;QD=21.57;ReadPosRankSum=3.384;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:4,225:229:99:4939,549,0 chrXII 877274 . T A 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.137;QD=24.60;ReadPosRankSum=1.705;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3182,345,0 chrXII 877560 . T G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.21;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3563,399,0 chrXII 877606 . C A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.28;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3582,402,0 chrXII 877607 . T A 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=198;Dels=0.00;FS=2.968;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-1.147;QD=18.49;ReadPosRankSum=2.375;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:3662,402,0 chrXII 877625 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=17.31;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4345,489,0 chrXII 877747 . C G 6471.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.79;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,280:284:99:6471,773,0 chrXII 878238 . T C 5722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=248;Dels=0.00;FS=3.866;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.789;QD=23.07;ReadPosRankSum=1.718;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5722,648,0 chrXII 878767 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.37;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3575,390,0 chrXII 878842 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.438;QD=22.59;ReadPosRankSum=1.642;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3457,384,0 chrXII 878875 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.97;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3087,333,0 chrXII 879214 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=3.139;HaplotypeScore=8.2928;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.347;QD=21.47;ReadPosRankSum=1.509;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3715,408,0 chrXII 879247 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.75;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3382,396,0 chrXII 879266 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.02;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3363,369,0 chrXII 879298 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.75;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3173,360,0 chrXII 879714 . T C 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.460;QD=22.11;ReadPosRankSum=2.944;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2797,321,0 chrXII 879756 . C T 2700 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.68;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2733,294,0 chrXII 880251 . C A 2595 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=18.15;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2628,288,0 chrXII 880276 . G C 2707 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.41;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2740,306,0 chrXII 880747 . G C 4333.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.8308;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.57;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4333,474,0 chrXII 883237 . T C 3024 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.86;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3057,348,0 chrXII 883249 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.96;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2907,318,0 chrXII 883273 . G T 2824 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.22;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2857,315,0 chrXII 883429 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=175;Dels=0.00;FS=6.011;HaplotypeScore=8.2335;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.954;QD=22.66;ReadPosRankSum=2.960;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3965,444,0 chrXII 883499 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=3.354;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=1.452;QD=17.91;ReadPosRankSum=1.716;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:3780,429,0 chrXII 883503 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.065;QD=16.83;ReadPosRankSum=1.716;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:3635,426,0 chrXII 883954 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=15.4781;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.55;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3071,339,0 chrXII 884656 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.86;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2954,321,0 chrXII 884828 . T C 1711 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.13;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1744,192,0 chrXII 884831 . G A 1561 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.81;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1594,180,0 chrXII 884838 . T C 1485 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.928;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.485;QD=17.68;ReadPosRankSum=1.650;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1518,168,0 chrXII 885001 . T A 1996 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.21;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2029,219,0 chrXII 885037 . G C 1205 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.08;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1238,144,0 chrXII 885058 . C T 1104 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=16.73;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1137,129,0 chrXII 885068 . C T 998 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=54.5770;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=15.35;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1031,117,0 chrXII 885146 . G T 1860 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=11.6851;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.68;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1893,210,0 chrXII 885190 . A T 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=4.305;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.839;QD=23.16;ReadPosRankSum=1.696;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2280,255,0 chrXII 885216 . T C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.541;QD=23.02;ReadPosRankSum=1.637;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2542,288,0 chrXII 885248 . T A 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-1.131;QD=21.44;ReadPosRankSum=2.839;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2842,306,0 chrXII 885268 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.5302;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.224;QD=21.52;ReadPosRankSum=2.955;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3378,381,0 chrXII 885303 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=5.579;HaplotypeScore=10.9772;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.078;QD=23.18;ReadPosRankSum=1.667;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3709,411,0 chrXII 885745 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.4027;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.11;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3560,399,0 chrXII 885989 . T C 2718 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.23;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2751,321,0 chrXII 886076 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.10;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3604,390,0 chrXII 886091 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.3312;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.31;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3331,375,0 chrXII 886181 . A G 2887 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.21;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2920,336,0 chrXII 886838 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.70;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4005,438,0 chrXII 886881 . G C 3902.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.6618;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.30;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:3902,441,0 chrXII 887067 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=4.139;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.544;QD=21.31;ReadPosRankSum=1.711;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3580,420,0 chrXII 888517 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.50;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2549,279,0 chrXII 888959 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2571,279,0 chrXII 891755 . G A 4565.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.94;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4565,507,0 chrXII 891782 . C T 4850.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.77;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4850,543,0 chrXII 892172 . T A 3186 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.7968;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=18.42;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3219,375,0 chrXII 892174 . C T 3397.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.7870;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=19.98;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3397,378,0 chrXII 892181 . A G 2937 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=172;Dels=0.00;FS=14.545;HaplotypeScore=8.2530;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=0.187;QD=17.08;ReadPosRankSum=2.854;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:2970,345,0 chrXII 892217 . T C 2960 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.83;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2993,336,0 chrXII 892370 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.2960;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.79;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5218,567,0 chrXII 892436 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.03;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3680,408,0 chrXII 893157 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.33;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4340,474,0 chrXII 893222 . A G 5828.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=20.2943;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.16;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5828,660,0 chrXII 893293 . G A 5519.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=18.9634;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.43;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5519,600,0 chrXII 893372 . C T 5375.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.59;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5375,585,0 chrXII 893382 . G A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=20.94;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5089,547,0 chrXII 893396 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.61;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4805,528,0 chrXII 893440 . T A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.09;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:4596,501,0 chrXII 893453 . A T 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.004;DP=257;Dels=0.00;FS=14.953;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.370;QD=18.86;ReadPosRankSum=4.110;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:6,251:257:99:4847,531,0 chrXII 893651 . T C 6049.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=18.7942;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.54;SB=-3.176e+03 GT:AD:DP:GQ:PL 1/1:0,253:257:99:6049,681,0 chrXII 893948 . T C 4117.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4117,480,0 chrXII 894104 . T A 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=147;Dels=0.00;FS=3.611;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.271;QD=23.73;ReadPosRankSum=1.709;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3488,384,0 chrXII 894188 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.07;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3377,363,0 chrXII 895274 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=3.346;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=-1.331;QD=22.95;ReadPosRankSum=1.618;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2833,318,0 chrXII 895451 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.62;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3177,354,0 chrXII 895619 . T C 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.144;QD=21.25;ReadPosRankSum=1.715;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4377,507,0 chrXII 895631 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.333;QD=21.91;ReadPosRankSum=1.664;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4470,498,0 chrXII 895661 . T G 4200.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.81;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4200,489,0 chrXII 895733 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.34;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4290,468,0 chrXII 895967 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.57;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3536,393,0 chrXII 896197 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.65;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4234,471,0 chrXII 896568 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3778,408,0 chrXII 896731 . A G 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=214;Dels=0.00;FS=9.532;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.429;QD=21.12;ReadPosRankSum=2.939;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:4520,522,0 chrXII 897307 . A T 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.8640;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.638;QD=23.13;ReadPosRankSum=1.712;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3956,435,0 chrXII 897556 . G A 4973.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.02;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4973,567,0 chrXII 897689 . T C 3156 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.32;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3189,360,0 chrXII 897709 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.220;QD=21.45;ReadPosRankSum=1.711;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3540,396,0 chrXII 897737 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1771;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.73;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3710,411,0 chrXII 898366 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.2150;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.84;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3361,372,0 chrXII 898520 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9139;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.41;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3511,399,0 chrXII 898907 . G C 2226 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=21.82;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2259,255,0 chrXII 899119 . A G 2464 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=19.10;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2497,279,0 chrXII 899140 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=132;Dels=0.00;FS=12.350;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;MQRankSum=0.419;QD=17.00;ReadPosRankSum=2.931;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:3,127:132:99:2277,258,0 chrXII 899154 . T C 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.647;HaplotypeScore=98.6350;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;MQRankSum=-0.630;QD=16.95;ReadPosRankSum=1.680;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2304,258,0 chrXII 899303 . T A 2345 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.12;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2378,267,0 chrXII 899462 . A C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=131;Dels=0.00;FS=7.292;HaplotypeScore=9.3568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.744;QD=21.39;ReadPosRankSum=2.335;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2835,327,0 chrXII 899580 . C G 2934 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.2187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2967,330,0 chrXII 899679 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.20;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2741,297,0 chrXII 899910 . T C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.023;QD=22.62;ReadPosRankSum=1.705;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2906,336,0 chrXII 899955 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=6.185;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.092;QD=21.49;ReadPosRankSum=2.395;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2956,333,0 chrXII 899979 . G A 3106 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.99;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3139,348,0 chrXII 900141 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.30;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3612,396,0 chrXII 900280 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.876;HaplotypeScore=8.2180;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.962;QD=20.17;ReadPosRankSum=1.705;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2594,303,0 chrXII 900498 . T C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.458;QD=21.51;ReadPosRankSum=1.699;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2313,255,0 chrXII 900812 . C G 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.412;QD=22.68;ReadPosRankSum=1.650;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3856,413,0 chrXII 901179 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.04;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3166,345,0 chrXII 901190 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.41;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2945,321,0 chrXII 901473 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3810,411,0 chrXII 901694 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.50;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2531,273,0 chrXII 901826 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.06;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2639,297,0 chrXII 901875 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.56;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2357,258,0 chrXII 901929 . T C 2686 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.57;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2719,306,0 chrXII 902330 . T C 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=111;Dels=0.00;FS=3.037;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.503;QD=21.53;ReadPosRankSum=2.383;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2423,273,0 chrXII 902475 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.81;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3315,372,0 chrXII 902591 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3380,369,0 chrXII 902715 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.9653;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.79;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3996,432,0 chrXII 902761 . G A 4634.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.4752;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.78;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4634,498,0 chrXII 902850 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=134;Dels=0.00;FS=3.023;HaplotypeScore=7.6082;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.231;QD=23.01;ReadPosRankSum=2.394;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3117,345,0 chrXII 902920 . C T 4376.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4380;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.28;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4376,492,0 chrXII 902948 . C A 4856.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.04;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4856,525,0 chrXII 903173 . T C 5990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=17.8114;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.188;QD=23.13;ReadPosRankSum=1.705;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:1,257:259:99:5990,669,0 chrXII 903387 . A G 3131 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.31;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3164,360,0 chrXII 903720 . T A 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=141;Dels=0.00;FS=2.589;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.207;QD=21.40;ReadPosRankSum=2.950;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3051,345,0 chrXII 903957 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=3.254;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.559;QD=22.27;ReadPosRankSum=1.701;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4900,549,0 chrXII 904122 . T C 391.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DP=271;Dels=0.00;FS=0.533;HaplotypeScore=11.9110;MLEAC=1;MLEAF=0.500;MQ=53.83;MQ0=0;MQRankSum=-3.117;QD=1.44;ReadPosRankSum=-4.038;SB=-3.670e+02 GT:AD:DP:GQ:PL 0/1:206,61:271:99:421,0,3198 chrXII 904125 . A G 274.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.452;DP=260;Dels=0.00;FS=0.556;HaplotypeScore=9.5449;MLEAC=1;MLEAF=0.500;MQ=54.34;MQ0=0;MQRankSum=-4.721;QD=1.05;ReadPosRankSum=-4.313;SB=-2.920e+02 GT:AD:DP:GQ:PL 0/1:205,55:260:99:304,0,3390 chrXII 904239 . T C 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=202;Dels=0.00;FS=7.049;HaplotypeScore=16.1331;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.140;QD=19.54;ReadPosRankSum=2.401;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:3948,459,0 chrXII 904696 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.17;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1580,189,0 chrXII 904915 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.99;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3090,342,0 chrXII 905007 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3157,342,0 chrXII 905691 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.49;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1774,207,0 chrXII 905760 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.58;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2585,279,0 chrXII 905771 . A T 2399 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.01;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2432,264,0 chrXII 906129 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=15.1414;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.85;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2958,339,0 chrXII 906306 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.15;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2558,282,0 chrXII 906307 . G C 2503 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.35;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2536,279,0 chrXII 906631 . G T 2890 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.79;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2923,324,0 chrXII 906659 . C G 2792 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.64;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2825,327,0 chrXII 906872 . T C 2150 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.16;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2183,246,0 chrXII 906988 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.96;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2075,225,0 chrXII 907076 . A G 2869 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.52;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2902,318,0 chrXII 907701 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.6811;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4165,456,0 chrXII 908027 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3700,414,0 chrXII 908408 . A G 5534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=220;Dels=0.00;FS=3.338;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.283;QD=25.15;ReadPosRankSum=1.701;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5534,609,0 chrXII 908717 . A G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.819;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.784;QD=21.29;ReadPosRankSum=1.699;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2290,273,0 chrXII 908930 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4258;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.02;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2476,270,0 chrXII 908936 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.13;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2589,282,0 chrXII 909328 . T A 2033 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2066,228,0 chrXII 909951 . C G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.55;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3535,399,0 chrXII 910497 . A G 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.010;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.422;QD=21.44;ReadPosRankSum=1.706;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2927,339,0 chrXII 910579 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.33;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3504,381,0 chrXII 910661 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.32;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3451,381,0 chrXII 910676 . A T 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=4.328;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.290;QD=23.78;ReadPosRankSum=1.639;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3543,390,0 chrXII 910928 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=122;Dels=0.00;FS=3.352;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.325;QD=21.99;ReadPosRankSum=1.674;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2716,303,0 chrXII 911387 . G T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3312,357,0 chrXII 911501 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=5.494;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.265;QD=20.69;ReadPosRankSum=1.690;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3393,402,0 chrXII 911510 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.439;QD=19.57;ReadPosRankSum=1.666;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3125,357,0 chrXII 911657 . G A 5181.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.8247;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.79;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5181,558,0 chrXII 912240 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3262,363,0 chrXII 912862 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.17;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3093,351,0 chrXII 913219 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.7004;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1928,210,0 chrXII 913342 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.98;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3132,354,0 chrXII 913444 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.61;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3741,402,0 chrXII 913684 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.53;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4642,522,0 chrXII 913801 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4550;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.450;QD=19.25;ReadPosRankSum=-0.423;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3330,375,0 chrXII 913948 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.87;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3485,381,0 chrXII 914146 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3511,378,0 chrXII 914320 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.62;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3016,345,0 chrXII 914428 . A G 2589 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.22;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2622,312,0 chrXII 914581 . A G 2739 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.59;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2772,324,0 chrXII 914707 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.01;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3727,408,0 chrXII 914775 . G T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.72;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3259,357,0 chrXII 914813 . T C 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=7.205;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=1.050;QD=21.36;ReadPosRankSum=2.412;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2810,312,0 chrXII 914832 . C A 2457 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.00;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2490,273,0 chrXII 914840 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.86;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2240,249,0 chrXII 914933 . T C 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=4.248;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.596;QD=19.34;ReadPosRankSum=1.704;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2450,276,0 chrXII 915110 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=16.15;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1729,192,0 chrXII 915123 . A G 1756 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.68;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1789,204,0 chrXII 915130 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.762;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-1.408;QD=15.93;ReadPosRankSum=1.700;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:1753,198,0 chrXII 915461 . A T 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.433;QD=21.93;ReadPosRankSum=1.681;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3016,339,0 chrXII 915889 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=162;Dels=0.00;FS=6.051;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.208;QD=21.69;ReadPosRankSum=2.956;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:3,157:162:99:3514,390,0 chrXII 916707 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0426;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.47;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1898,222,0 chrXII 917100 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.58;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3325,360,0 chrXII 917305 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.54;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1870,210,0 chrXII 918322 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.188;HaplotypeScore=8.6496;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.247;QD=21.41;ReadPosRankSum=1.712;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3747,423,0 chrXII 918482 . C G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.07;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3493,387,0 chrXII 918511 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=165;Dels=0.00;FS=7.131;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.651;QD=22.01;ReadPosRankSum=2.389;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3631,399,0 chrXII 918824 . A G 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.274;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.713;QD=24.18;ReadPosRankSum=1.681;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3288,366,0 chrXII 919063 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.67;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1418,162,0 chrXII 919181 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.77;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1117,132,0 chrXII 919261 . T G 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;MQRankSum=-1.270;QD=21.76;ReadPosRankSum=1.578;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1012,111,0 chrXII 919424 . T C 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.085;QD=24.35;ReadPosRankSum=1.656;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2249,252,0 chrXII 920406 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3940,438,0 chrXII 920484 . T C 2625 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.35;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2658,303,0 chrXII 920502 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.68;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2453,270,0 chrXII 920529 . A G 2461 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.4387;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.68;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2494,279,0 chrXII 920700 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.9487;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.73;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3140,336,0 chrXII 921404 . A C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=6.176;HaplotypeScore=6.2246;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.355;QD=20.86;ReadPosRankSum=2.398;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3037,342,0 chrXII 921424 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=166;Dels=0.00;FS=6.030;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.374;QD=20.05;ReadPosRankSum=2.945;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3329,375,0 chrXII 922026 . C A 2580 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.15;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2613,285,0 chrXII 922242 . C G 2720 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.61;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2753,309,0 chrXII 922328 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.14;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3268,354,0 chrXII 922435 . T A 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.987;QD=22.98;ReadPosRankSum=1.672;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3952,444,0 chrXII 922517 . A G 3199 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.69;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3232,360,0 chrXII 922595 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8720;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.15;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3965,432,0 chrXII 922706 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.9590;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.95;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3512,399,0 chrXII 923248 . G A 5805.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.85;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5805,628,0 chrXII 923570 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5618;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.24;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3156,363,0 chrXII 923612 . A G 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=138;Dels=0.00;FS=7.213;HaplotypeScore=13.4287;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.319;QD=21.99;ReadPosRankSum=2.342;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3067,342,0 chrXII 923885 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3061,327,0 chrXII 924464 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3793;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.91;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3712,399,0 chrXII 924492 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.052;DP=167;Dels=0.00;FS=7.920;HaplotypeScore=9.3808;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.650;QD=23.29;ReadPosRankSum=2.006;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3889,429,0 chrXII 924695 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.96;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4699,543,0 chrXII 925562 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.81;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2962,321,0 chrXII 925665 . T C 2387 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.94;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2420,273,0 chrXII 925788 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.87;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3303,384,0 chrXII 925840 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.10;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3142,342,0 chrXII 925971 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=3.629;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.659;QD=21.78;ReadPosRankSum=1.659;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3169,354,0 chrXII 926623 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3673,411,0 chrXII 927454 . T C 3028 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.17;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3061,360,0 chrXII 927638 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2110,228,0 chrXII 928259 . A C 1002 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.78;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1035,117,0 chrXII 928263 . T C 992 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.04;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1025,114,0 chrXII 928340 . A T 483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.904;QD=16.66;ReadPosRankSum=2.281;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:2,27:29:57:516,57,0 chrXII 928393 . C A 883 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=23.24;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:38:99:916,99,0 chrXII 928442 . A C 1249 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=25.49;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1282,144,0 chrXII 928548 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.04;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1160,126,0 chrXII 928621 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.68;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1757,195,0 chrXII 928626 . C G 1773 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.62;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1806,201,0 chrXII 929273 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=2.916;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.740;QD=20.25;ReadPosRankSum=2.419;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3300,387,0 chrXII 929744 . T G 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=115;Dels=0.00;FS=6.101;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.288;QD=21.83;ReadPosRankSum=2.937;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,109:115:99:2544,291,0 chrXII 929932 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.32;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3091,333,0 chrXII 929950 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.26;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3380,366,0 chrXII 929984 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.54;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3598,384,0 chrXII 930091 . T A 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.569;QD=24.79;ReadPosRankSum=1.678;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4734,510,0 chrXII 930163 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.02;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4604,498,0 chrXII 930212 . C T 5646.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.1737;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.14;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5646,630,0 chrXII 930325 . G A 5188.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.4746;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.27;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5188,573,0 chrXII 930472 . A C 5375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.505;QD=22.21;ReadPosRankSum=1.689;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:1,239:242:99:5375,612,0 chrXII 930668 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.65;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3619,387,0 chrXII 930728 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2734,312,0 chrXII 930773 . A G 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.266;QD=22.58;ReadPosRankSum=1.454;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3126,360,0 chrXII 931517 . A G 3102 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.32;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3135,354,0 chrXII 931804 . C T 5346.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.4543;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=24.19;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5346,585,0 chrXII 931834 . C T 5189.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.9248;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.29;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:5189,576,0 chrXII 931835 . A G 4929.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.9248;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.32;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:4929,561,0 chrXII 931890 . G C 7064.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=26.4661;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.04;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:0,366:371:99:7064,801,0 chrXII 931997 . A G 6073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=265;Dels=0.00;FS=3.461;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.026;QD=22.92;ReadPosRankSum=1.719;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:6073,710,0 chrXII 932015 . T C 5509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=252;Dels=0.00;FS=3.024;HaplotypeScore=8.1528;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=1.100;QD=21.86;ReadPosRankSum=2.332;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:5509,650,0 chrXII 932059 . C T 6080.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=11.5825;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=22.19;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:6080,657,0 chrXII 932081 . C T 5608.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=20.03;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:5608,630,0 chrXII 932109 . G C 6092.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.72;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:6092,687,0 chrXII 932140 . C T 4887.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=12.1309;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=18.24;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:4887,570,0 chrXII 932256 . A T 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;MQRankSum=-1.383;QD=17.90;ReadPosRankSum=1.705;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2342,255,0 chrXII 932439 . A G 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.083;QD=21.37;ReadPosRankSum=1.624;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2811,318,0 chrXII 932469 . T C 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.352;HaplotypeScore=9.2709;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;MQRankSum=-1.674;QD=20.67;ReadPosRankSum=1.674;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2534,288,0 chrXII 932662 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.01;FS=3.771;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.237;QD=18.83;ReadPosRankSum=1.701;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2161,246,0 chrXII 933014 . C A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.21;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3504,384,0 chrXII 933151 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.33;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3713,399,0 chrXII 933245 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=184;Dels=0.00;FS=10.896;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-2.217;QD=21.33;ReadPosRankSum=2.950;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:3,178:184:99:3924,465,0 chrXII 933272 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.28;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4256,486,0 chrXII 933572 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-0.286;QD=22.20;ReadPosRankSum=1.705;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2897,321,0 chrXII 933617 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.06;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2413,264,0 chrXII 933702 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.25;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1835,195,0 chrXII 933722 . A C 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.546;QD=19.20;ReadPosRankSum=2.310;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1723,189,0 chrXII 933908 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.40;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1326,144,0 chrXII 933932 . G T 1513 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=26.09;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1546,168,0 chrXII 934140 . T C 2909 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.46;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2942,330,0 chrXII 934221 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.34;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1807,198,0 chrXII 934420 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3637;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.05;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3395,375,0 chrXII 934434 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.6655;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.52;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3465,369,0 chrXII 934492 . A G 2682 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.50;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2715,321,0 chrXII 934515 . A T 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=3.599;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.488;QD=23.21;ReadPosRankSum=1.683;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3296,354,0 chrXII 935020 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=206;Dels=0.00;FS=6.171;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.946;QD=22.18;ReadPosRankSum=2.354;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4570,528,0 chrXII 935293 . A G 5851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=269;Dels=0.00;FS=5.683;HaplotypeScore=16.7030;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-2.205;QD=21.75;ReadPosRankSum=2.907;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:3,266:269:99:5851,672,0 chrXII 935365 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.5017;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.68;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5171,582,0 chrXII 935485 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.361;QD=21.98;ReadPosRankSum=1.696;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4220,480,0 chrXII 935629 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.54;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4079,438,0 chrXII 935644 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.15;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3982,426,0 chrXII 935713 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.41;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3196,363,0 chrXII 935740 . G A 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.307;QD=18.73;ReadPosRankSum=-0.356;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2674,281,0 chrXII 935743 . T C 2709 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.63;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2742,306,0 chrXII 935764 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.09;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2724,306,0 chrXII 935848 . A G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.674;QD=20.65;ReadPosRankSum=1.708;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3048,354,0 chrXII 936111 . A G 5563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=3.711;HaplotypeScore=17.3159;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.275;QD=23.47;ReadPosRankSum=1.717;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5563,612,0 chrXII 936207 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.22;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4265,468,0 chrXII 936226 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-1.394;QD=20.20;ReadPosRankSum=1.715;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4141,486,0 chrXII 936336 . G T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.03;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3764,429,0 chrXII 936676 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.492;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.563;QD=23.10;ReadPosRankSum=1.708;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3327,381,0 chrXII 937242 . A T 2774 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.37;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2807,303,0 chrXII 937277 . T A 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.2028;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=0.777;QD=20.98;ReadPosRankSum=-1.678;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2718,290,0 chrXII 937331 . T C 1532 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=17.21;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1565,174,0 chrXII 937738 . A G 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=193;Dels=0.00;FS=3.032;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-1.788;QD=22.03;ReadPosRankSum=2.424;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4252,468,0 chrXII 937750 . C A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.63;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4261,465,0 chrXII 937765 . T C 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.597;HaplotypeScore=7.3678;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.492;QD=19.80;ReadPosRankSum=1.696;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3781,426,0 chrXII 937821 . C A 4374.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.83;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4374,480,0 chrXII 937855 . A G 4876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=233;Dels=0.00;FS=3.019;HaplotypeScore=18.9924;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.132;QD=20.93;ReadPosRankSum=2.407;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:2,229:233:99:4876,581,0 chrXII 937897 . A G 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.3052;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-1.373;QD=21.09;ReadPosRankSum=1.718;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5082,570,0 chrXII 937900 . T A 4994.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.98;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4994,546,0 chrXII 937975 . G A 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=3.946;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.661;QD=22.20;ReadPosRankSum=1.379;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4374,486,0 chrXII 938064 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.30;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4174,456,0 chrXII 938122 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-1.345;QD=20.68;ReadPosRankSum=1.693;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3701,432,0 chrXII 938134 . A G 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.317;QD=21.71;ReadPosRankSum=1.690;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3561,393,0 chrXII 938137 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.56;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3537,387,0 chrXII 938489 . C A 2926 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8091;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.84;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2959,324,0 chrXII 938581 . C A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2797;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.66;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3467,381,0 chrXII 938653 . C T 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3849;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.634;QD=20.43;ReadPosRankSum=-1.364;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:2975,339,0 chrXII 938663 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.32;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3145,351,0 chrXII 938758 . T C 2947 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.33;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2980,339,0 chrXII 938791 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.62;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3280,360,0 chrXII 938809 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=7.716;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.499;QD=21.98;ReadPosRankSum=2.351;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3319,369,0 chrXII 938923 . G T 3007 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4765;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.31;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3040,336,0 chrXII 939652 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.112;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.705;QD=22.20;ReadPosRankSum=1.705;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2897,339,0 chrXII 939994 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.77;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2037,225,0 chrXII 940048 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.54;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2058,228,0 chrXII 940066 . G A 2020 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.20;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2053,225,0 chrXII 940102 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0683;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.29;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2439,267,0 chrXII 940138 . A T 2629 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.90;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2662,291,0 chrXII 940624 . T G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7495;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.66;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3715,420,0 chrXII 940672 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=142;Dels=0.00;FS=2.650;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.473;QD=21.10;ReadPosRankSum=1.159;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3029,345,0 chrXII 940786 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.231;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.356;QD=21.42;ReadPosRankSum=1.708;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3053,351,0 chrXII 940924 . A G 931 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.24;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:964,108,0 chrXII 940926 . G T 984 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=17.57;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1017,111,0 chrXII 941007 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=53.9466;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=19.80;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1399,159,0 chrXII 941048 . A T 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=53;Dels=0.00;FS=3.625;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=-0.621;QD=19.15;ReadPosRankSum=1.667;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1048,120,0 chrXII 941140 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=24.35;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1348,156,0 chrXII 947200 . A G 1596 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=14.64;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1629,183,0 chrXII 947218 . C G 2295 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=17.93;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2328,258,0 chrXII 947402 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.77;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3598,384,0 chrXII 947421 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.59;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3207,345,0 chrXII 947519 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.10;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2990,333,0 chrXII 947537 . A T 3046 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.3776;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.37;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3079,336,0 chrXII 947720 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.0538;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.07;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3490,384,0 chrXII 947954 . T C 2300 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.72;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2333,279,0 chrXII 948176 . T G 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.562;QD=19.46;ReadPosRankSum=1.592;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1473,162,0 chrXII 948186 . C T 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=5.119;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.755;QD=17.08;ReadPosRankSum=1.599;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1365,147,0 chrXII 948224 . A T 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.691;QD=20.80;ReadPosRankSum=1.691;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1801,195,0 chrXII 948299 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.4943;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.38;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1855,210,0 chrXII 948319 . G T 2193 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.69;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2226,252,0 chrXII 948442 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.65;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2374,267,0 chrXII 948612 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.89;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3019,321,0 chrXII 948664 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=153;Dels=0.00;FS=2.587;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-0.112;QD=23.05;ReadPosRankSum=2.928;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3527,393,0 chrXII 948676 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.447;QD=20.89;ReadPosRankSum=1.689;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3363,381,0 chrXII 948698 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=21.27;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3340,372,0 chrXII 948733 . A G 2886 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=19.24;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2919,327,0 chrXII 948758 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=162;Dels=0.00;FS=2.585;HaplotypeScore=10.1497;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.540;QD=20.79;ReadPosRankSum=2.957;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3368,384,0 chrXII 948914 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.81;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4340,489,0 chrXII 948922 . A T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.57;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4336,474,0 chrXII 948958 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.565;QD=20.26;ReadPosRankSum=2.024;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4112,474,0 chrXII 949030 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.9676;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.22;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4202,456,0 chrXII 949229 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.4453;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.39;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4450,498,0 chrXII 949418 . T A 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=7.674;HaplotypeScore=9.5097;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=1.130;QD=21.13;ReadPosRankSum=2.410;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3973,426,0 chrXII 949427 . C G 3599.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.35;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3599,402,0 chrXII 949429 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.21;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3593,408,0 chrXII 949489 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.2128;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.76;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3653,402,0 chrXII 949843 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.06;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3777,417,0 chrXII 949938 . C A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3325,363,0 chrXII 950047 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.41;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4123,468,0 chrXII 950492 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.74;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2239,252,0 chrXII 950788 . T C 1942 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.23;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1975,219,0 chrXII 950806 . C T 2094 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.39;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2127,231,0 chrXII 950859 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=17.68;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2190,252,0 chrXII 951032 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.08;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1888,207,0 chrXII 951084 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.08;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1949,210,0 chrXII 951105 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.46;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1933,210,0 chrXII 951212 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.33;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3430,390,0 chrXII 951341 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.671;QD=23.61;ReadPosRankSum=2.396;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4320,498,0 chrXII 951524 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.25;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:3989,462,0 chrXII 951540 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.880;QD=20.55;ReadPosRankSum=1.696;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3946,438,0 chrXII 951629 . A T 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.028;QD=22.57;ReadPosRankSum=1.695;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4221,471,0 chrXII 951692 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4129,459,0 chrXII 952187 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.78;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3921,423,0 chrXII 952262 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.5564;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.10;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4464,501,0 chrXII 952346 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3928,450,0 chrXII 952469 . C T 5637.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.2236;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.99;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5637,630,0 chrXII 952886 . C T 5290.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.13;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5290,603,0 chrXII 953059 . G T 2385 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.29;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2418,258,0 chrXII 953141 . A T 1512 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1545,165,0 chrXII 953351 . A T 2322 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.44;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2355,255,0 chrXII 953629 . C G 5179.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=21.2102;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.43;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5179,576,0 chrXII 953884 . G T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.7413;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.19;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3617,408,0 chrXII 954049 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.66;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2481,276,0 chrXII 954173 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.10;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2249,252,0 chrXII 954404 . G A 4037.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=22.68;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4037,462,0 chrXII 954572 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=0;QD=15.68;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:2933,318,0 chrXII 954585 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.01;FS=0.000;HaplotypeScore=22.1788;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=14.38;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:2852,330,0 chrXII 954590 . A C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=203;Dels=0.00;FS=3.032;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;MQRankSum=-2.256;QD=12.47;ReadPosRankSum=2.425;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:2564,309,0 chrXII 954604 . A G 2545 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=224;Dels=0.00;FS=12.477;HaplotypeScore=2.6882;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.024;QD=11.36;ReadPosRankSum=3.422;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:4,220:224:99:2578,294,0 chrXII 954609 . G C 2362 SnpCluster AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.54;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:2395,282,0 chrXII 954613 . G A 2662 SnpCluster AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=10.91;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:2695,297,0 chrXII 954620 . G A 2734 SnpCluster AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=10.89;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:2767,297,0 chrXII 954622 . G A 2627 SnpCluster AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=10.47;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:2660,294,0 chrXII 954636 . G C 2750 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=10.15;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:2783,327,0 chrXII 954648 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=12.14;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:3363,369,0 chrXII 954714 . C T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.3593;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.18;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4497,480,0 chrXII 954772 . G A 5273.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=24.30;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5273,570,0 chrXII 954849 . T G 5212.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=21.63;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5212,591,0 chrXII 955099 . A G 2881 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.47;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2914,336,0 chrXII 955168 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=7.010;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.083;QD=21.82;ReadPosRankSum=2.329;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3579,408,0 chrXII 955348 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.16;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3831,432,0 chrXII 955349 . G A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.99;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3819,438,0 chrXII 955360 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.962;QD=19.41;ReadPosRankSum=0.805;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3844,420,0 chrXII 955645 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=200;Dels=0.00;FS=6.087;HaplotypeScore=12.5470;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.956;QD=20.41;ReadPosRankSum=2.400;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4081,477,0 chrXII 955822 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=201;Dels=0.00;FS=8.102;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.448;QD=19.05;ReadPosRankSum=2.400;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:3829,432,0 chrXII 955825 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=196;Dels=0.00;FS=2.854;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.973;QD=18.59;ReadPosRankSum=2.412;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3643,423,0 chrXII 956047 . G C 4905.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=19.1786;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.36;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,205:210:99:4905,549,0 chrXII 956371 . G C 4612.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.02;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4612,528,0 chrXII 956584 . A G 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=120;Dels=0.00;FS=5.362;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.168;QD=21.13;ReadPosRankSum=2.942;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2569,300,0 chrXII 956833 . A G 2302 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.92;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2335,276,0 chrXII 956854 . G C 2443 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.81;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2476,279,0 chrXII 957115 . C T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.27;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3560,384,0 chrXII 957964 . A G 2789 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.13;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2822,321,0 chrXII 958009 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.80;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2467,285,0 chrXII 958144 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=24.78;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3420,372,0 chrXII 958180 . A G 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=118;Dels=0.00;FS=4.765;HaplotypeScore=98.2301;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=0.502;QD=19.71;ReadPosRankSum=3.382;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:4,113:118:99:2359,247,0 chrXII 958253 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.73;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2554,282,0 chrXII 958370 . A G 2716 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.05;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2749,315,0 chrXII 958385 . C A 2948 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.52;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2981,324,0 chrXII 958953 . C T 5375.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.47;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,224:229:99:5375,582,0 chrXII 958983 . C T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.88;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4976,537,0 chrXII 959060 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3626,393,0 chrXII 959099 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=15.2917;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.82;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3132,354,0 chrXII 959546 . G C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.625;QD=22.64;ReadPosRankSum=-0.227;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2795,306,0 chrXII 959671 . C A 1938 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=21.30;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1971,213,0 chrXII 959679 . C A 1773 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=19.48;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1806,195,0 chrXII 959687 . A G 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.737;QD=16.57;ReadPosRankSum=1.692;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1475,171,0 chrXII 959702 . A C 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.648;DP=89;Dels=0.00;FS=6.088;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=2.012;QD=16.46;ReadPosRankSum=2.898;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1498,177,0 chrXII 960118 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.73;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2065,219,0 chrXII 960131 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.83;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2216,249,0 chrXII 961196 . A T 2747 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2780,309,0 chrXII 961565 . A T 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=103;Dels=0.00;FS=4.331;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.488;QD=23.04;ReadPosRankSum=1.631;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2406,264,0 chrXII 961667 . A G 2186 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=18.84;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2219,255,0 chrXII 961676 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=18.62;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2379,261,0 chrXII 961679 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=17.94;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2258,258,0 chrXII 961688 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=17.01;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2176,258,0 chrXII 961731 . A G 2026 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.88;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2059,234,0 chrXII 961961 . A G 2312 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.12;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2345,261,0 chrXII 961974 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.30;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2397,264,0 chrXII 962189 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.40;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3192,348,0 chrXII 962683 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.19;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1813,198,0 chrXII 962846 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.19;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1808,198,0 chrXII 963090 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.78;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1623,177,0 chrXII 963095 . C G 1575 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.45;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1608,183,0 chrXII 963346 . G A 688 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=20.85;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:721,78,0 chrXII 963347 . G A 694 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=21.69;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:78:727,78,0 chrXII 963364 . C G 714 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=21.00;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:747,84,0 chrXII 963392 . A G 1121 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=19.67;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1154,129,0 chrXII 963469 . A G 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.424;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.102;QD=22.59;ReadPosRankSum=1.697;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2292,255,0 chrXII 963501 . C A 1756 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.90;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1789,192,0 chrXII 963678 . T G 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.701;QD=24.26;ReadPosRankSum=1.675;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2969,333,0 chrXII 964396 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.28;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2118,231,0 chrXII 964450 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.35;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2812,306,0 chrXII 964503 . A G 2388 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=21.71;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2421,270,0 chrXII 964507 . T C 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.352;QD=19.58;ReadPosRankSum=1.673;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2343,264,0 chrXII 964591 . T G 2223 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.17;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2256,252,0 chrXII 964739 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.75;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3263,351,0 chrXII 967075 . C G 2705 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.1809;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.99;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2738,312,0 chrXII 967302 . T C 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.956;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.582;QD=22.21;ReadPosRankSum=1.657;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2076,234,0 chrXII 969880 . A G 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.283;HaplotypeScore=9.4678;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.798;QD=22.41;ReadPosRankSum=1.672;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2610,303,0 chrXII 970294 . G T 2442 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2417;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.50;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2475,270,0 chrXII 970600 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.97;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4434,489,0 chrXII 970726 . C T 4418.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.14;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4418,486,0 chrXII 971164 . C T 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.933;DP=210;Dels=0.00;FS=8.939;HaplotypeScore=8.9819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.159;QD=24.22;ReadPosRankSum=2.262;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:5086,526,0 chrXII 971649 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.36;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3510,381,0 chrXII 972034 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.82;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1463,162,0 chrXII 972063 . A G 1470 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.60;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1503,168,0 chrXII 972375 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.85;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2060,225,0 chrXII 972928 . T G 2995 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.70;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3028,348,0 chrXII 974574 . A G 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.342;QD=22.47;ReadPosRankSum=1.689;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1831,204,0 chrXII 974945 . G A 2021 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2054,231,0 chrXII 975612 . C T 1023 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.73;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1056,117,0 chrXII 975675 . G A 1350 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.50;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1383,153,0 chrXII 975929 . A G 1869 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.07;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1902,219,0 chrXII 975964 . T G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=4.654;HaplotypeScore=58.3228;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.163;QD=21.07;ReadPosRankSum=1.637;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1571,180,0 chrXII 976083 . A G 1246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-0.152;QD=21.86;ReadPosRankSum=1.672;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1279,144,0 chrXII 976305 . T A 52.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=4;QD=5.89;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:4,5:9:9:85,9,0 chrXII 981547 . T G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=7.49;MQ0=28;QD=0.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,2:30:6:53,6,0 chrXII 981550 . A T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.14;MQ0=31;QD=0.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:30,3:33:6:56,6,0 chrXII 981552 . C A 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.03;MQ0=32;QD=0.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:31,2:34:6:52,6,0 chrXII 981556 . T G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.74;MQ0=35;QD=0.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:35,2:37:6:53,6,0 chrXII 981559 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.57;MQ0=37;QD=0.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:36,3:39:6:55,6,0 chrXII 981657 . C T 188.03 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=17;QD=4.70;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:16,23:40:24:221,24,0 chrXII 981690 . T C 318 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=2;QD=7.57;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,40:42:39:351,39,0 chrXII 981700 . A T 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;DP=86;Dels=0.00;FS=16.339;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.43;MQ0=0;MQRankSum=0.916;QD=0.67;ReadPosRankSum=7.616;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:32,54:86:88:88,0,226 chrXII 981911 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=162;Dels=0.00;FS=4.305;HaplotypeScore=8.2773;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.773;QD=23.41;ReadPosRankSum=1.710;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3793,420,0 chrXII 982257 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=163;Dels=0.00;FS=3.024;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.234;QD=23.46;ReadPosRankSum=2.359;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3824,423,0 chrXII 983190 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.48;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3216,351,0 chrXII 983890 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3022,336,0 chrXII 986295 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.09;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2873,333,0 chrXII 986346 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.88;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2847,309,0 chrXII 986367 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.43;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2240,255,0 chrXII 986469 . T A 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=3.274;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.713;QD=22.34;ReadPosRankSum=1.645;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2691,291,0 chrXII 986946 . A T 4946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=5.077;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.026;QD=24.01;ReadPosRankSum=1.648;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4946,552,0 chrXII 986998 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.78;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3824,426,0 chrXII 986999 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.72;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3853,429,0 chrXII 987115 . A G 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.740;QD=20.57;ReadPosRankSum=1.695;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3805,447,0 chrXII 987293 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.115;QD=24.16;ReadPosRankSum=1.714;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4735,534,0 chrXII 987375 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.776;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.052;QD=22.67;ReadPosRankSum=1.711;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3808,429,0 chrXII 987417 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.57;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3201,354,0 chrXII 988464 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.2161;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.589;QD=23.59;ReadPosRankSum=-0.944;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3420,384,0 chrXII 988495 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.336;QD=22.96;ReadPosRankSum=1.629;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3109,351,0 chrXII 988843 . A T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.80;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3808,408,0 chrXII 988847 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.71;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3611,393,0 chrXII 989024 . G C 3333.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.96;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3333,381,0 chrXII 989408 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4101,444,0 chrXII 989610 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.69;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3210,348,0 chrXII 989828 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.112;HaplotypeScore=3.1771;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.356;QD=17.87;ReadPosRankSum=1.678;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2338,273,0 chrXII 989831 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1771;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.30;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2357,255,0 chrXII 989846 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.03;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2269,258,0 chrXII 990344 . T A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4011,432,0 chrXII 990547 . A G 3168 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.31;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3201,360,0 chrXII 990749 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.16;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3005,321,0 chrXII 990766 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.72;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3204,363,0 chrXII 990848 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.569;QD=22.28;ReadPosRankSum=1.659;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3241,360,0 chrXII 990875 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.388;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.061;QD=23.30;ReadPosRankSum=1.683;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3308,340,0 chrXII 990920 . G T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.53;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3459,378,0 chrXII 991691 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=141;Dels=0.00;FS=2.752;HaplotypeScore=9.0202;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.490;QD=22.61;ReadPosRankSum=2.414;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,136:141:99:3221,363,0 chrXII 992002 . C A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.05;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4080,450,0 chrXII 992572 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.81;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2489,270,0 chrXII 992595 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=6.392;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.284;QD=19.76;ReadPosRankSum=1.647;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2463,270,0 chrXII 992601 . A C 2338 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.01;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2371,270,0 chrXII 992662 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.2801;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.51;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2515,276,0 chrXII 992933 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.87;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2224,237,0 chrXII 992940 . G T 2079 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.18;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2112,231,0 chrXII 992990 . A G 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.285;QD=19.04;ReadPosRankSum=1.695;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1804,204,0 chrXII 993389 . G T 1515 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1548,165,0 chrXII 993707 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.23;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2217,240,0 chrXII 993808 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.96;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2673,294,0 chrXII 994078 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3540;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.36;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2318,264,0 chrXII 994177 . T C 2722 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3760;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.13;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2755,321,0 chrXII 994215 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.53;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1696,186,0 chrXII 994222 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.41;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1450,159,0 chrXII 994411 . A G 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.808;QD=22.62;ReadPosRankSum=1.559;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1390,153,0 chrXII 994453 . T C 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.732;QD=23.51;ReadPosRankSum=1.641;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1843,210,0 chrXII 994520 . T C 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.224;QD=23.95;ReadPosRankSum=1.651;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2069,228,0 chrXII 994681 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=23.20;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3967,429,0 chrXII 994820 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=174;Dels=0.00;FS=3.460;HaplotypeScore=2.6899;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.471;QD=20.62;ReadPosRankSum=1.712;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3588,387,0 chrXII 994825 . A C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=180;Dels=0.00;FS=6.544;HaplotypeScore=4.1984;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-1.644;QD=20.51;ReadPosRankSum=2.368;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3691,411,0 chrXII 994873 . G A 4092.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.77;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4092,444,0 chrXII 994876 . T A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=18.89;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4005,438,0 chrXII 994933 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.11;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3554,399,0 chrXII 994942 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.6246;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.32;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3408,378,0 chrXII 995062 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.6268;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=1.501;QD=21.68;ReadPosRankSum=1.078;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3924,441,0 chrXII 995272 . T C 3180 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3213,363,0 chrXII 995326 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.90;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3116,339,0 chrXII 995599 . A G 2664 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.44;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2697,303,0 chrXII 995857 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=116;Dels=0.00;FS=2.984;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.562;QD=23.70;ReadPosRankSum=2.365;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2782,312,0 chrXII 996068 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3629,402,0 chrXII 996244 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=17.1038;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4255,462,0 chrXII 996556 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.410;QD=22.74;ReadPosRankSum=1.675;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4162,486,0 chrXII 996739 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.018;QD=24.62;ReadPosRankSum=1.710;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3988,450,0 chrXII 997064 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.31;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4499,522,0 chrXII 997285 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.1836;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.97;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4482,486,0 chrXII 997480 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=167;Dels=0.00;FS=2.803;HaplotypeScore=16.2348;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.331;QD=21.75;ReadPosRankSum=2.391;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3633,405,0 chrXII 997535 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.77;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3526,384,0 chrXII 997556 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=175;Dels=0.00;FS=3.163;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.995;QD=20.70;ReadPosRankSum=1.672;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3623,408,0 chrXII 998338 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1534;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.33;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4020,441,0 chrXII 998377 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=152;Dels=0.00;FS=5.733;HaplotypeScore=13.8135;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.397;QD=21.21;ReadPosRankSum=2.927;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3257,378,0 chrXII 998806 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.5990;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.34;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2807,303,0 chrXII 998854 . T C 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.866;QD=21.98;ReadPosRankSum=1.643;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2583,294,0 chrXII 999870 . T A 5142.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.65;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5142,564,0 chrXII 1000003 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.38;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3090,336,0 chrXII 1000048 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;DP=178;Dels=0.00;FS=4.921;HaplotypeScore=8.2197;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.713;QD=20.76;ReadPosRankSum=1.008;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3696,379,0 chrXII 1000542 . C G 3336.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.80;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3336,378,0 chrXII 1000756 . T A 2579 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.7865;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.96;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2612,294,0 chrXII 1000801 . T G 2259 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.37;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,118:123:99:2292,264,0 chrXII 1000939 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.10;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3543,381,0 chrXII 1001023 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2765,312,0 chrXII 1001409 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.58;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3848,441,0 chrXII 1001464 . T G 4195.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.69;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4195,492,0 chrXII 1001833 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.75;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2730,297,0 chrXII 1001891 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.03;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2544,291,0 chrXII 1001922 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.92;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3223,354,0 chrXII 1002086 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1468,162,0 chrXII 1002191 . C G 1389 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.03;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1422,162,0 chrXII 1002221 . A T 28.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;DP=61;Dels=0.00;FS=12.467;HaplotypeScore=91.8403;MLEAC=1;MLEAF=0.500;MQ=49.67;MQ0=0;MQRankSum=1.566;QD=0.46;ReadPosRankSum=-2.763;SB=-2.809e+01 GT:AD:DP:GQ:PL 0/1:54,7:61:14:58,0,14 chrXII 1002243 . G C 827 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=12.72;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:860,99,0 chrXII 1002952 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.7062;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.09;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4408,498,0 chrXII 1003093 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.86;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2575,297,0 chrXII 1003096 . T C 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=137;Dels=0.00;FS=6.032;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.346;QD=18.77;ReadPosRankSum=2.861;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2604,297,0 chrXII 1003111 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.40;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3001,339,0 chrXII 1003173 . A C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.121;QD=20.45;ReadPosRankSum=1.691;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3476,402,0 chrXII 1003348 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=155;Dels=0.00;FS=3.125;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.315;QD=21.92;ReadPosRankSum=1.710;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3397,387,0 chrXII 1003591 . A G 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.901;DP=281;Dels=0.00;FS=90.805;HaplotypeScore=23.9092;MLEAC=1;MLEAF=0.500;MQ=49.74;MQ0=32;MQRankSum=-11.134;QD=0.06;ReadPosRankSum=-2.951;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,90:281:48:48,0,3960 chrXII 1003643 . A G 2039.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394;DP=449;Dels=0.00;FS=323.933;HaplotypeScore=23.9729;MLEAC=1;MLEAF=0.500;MQ=41.04;MQ0=42;MQRankSum=-15.833;QD=4.54;ReadPosRankSum=6.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:218,226:449:99:2069,0,3901 chrXII 1003798 . A G 2018.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.189;DP=466;Dels=0.00;FS=2.426;HaplotypeScore=25.4556;MLEAC=1;MLEAF=0.500;MQ=41.89;MQ0=1;MQRankSum=-18.472;QD=4.33;ReadPosRankSum=-1.671;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,266:466:99:2048,0,3519 chrXII 1003864 . C T 3615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.666;DP=493;Dels=0.00;FS=2.976;HaplotypeScore=47.4784;MLEAC=1;MLEAF=0.500;MQ=41.82;MQ0=11;MQRankSum=18.211;QD=7.33;ReadPosRankSum=-0.616;SB=-1.727e+03 GT:AD:DP:GQ:PL 0/1:286,205:493:99:3615,0,2522 chrXII 1004010 . C G 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.821;DP=214;Dels=0.00;FS=6.059;HaplotypeScore=123.0349;MLEAC=1;MLEAF=0.500;MQ=38.58;MQ0=1;MQRankSum=-8.830;QD=0.17;ReadPosRankSum=0.822;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,102:214:67:67,0,1584 chrXII 1004023 . A G 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.282;DP=210;Dels=0.00;FS=15.402;HaplotypeScore=95.5384;MLEAC=1;MLEAF=0.500;MQ=37.37;MQ0=3;MQRankSum=-11.252;QD=0.23;ReadPosRankSum=2.111;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,104:210:79:79,0,1266 chrXII 1004029 . C T 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.675;DP=200;Dels=0.00;FS=18.297;HaplotypeScore=58.0971;MLEAC=1;MLEAF=0.500;MQ=37.67;MQ0=4;MQRankSum=-11.537;QD=0.32;ReadPosRankSum=0.357;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,130:200:93:93,0,1215 chrXII 1004035 . C G 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.817;DP=191;Dels=0.00;FS=12.709;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=38.58;MQ0=6;MQRankSum=-11.377;QD=0.24;ReadPosRankSum=0.902;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,120:191:75:75,0,1090 chrXII 1004047 . A G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.515;DP=164;Dels=0.00;FS=3.038;HaplotypeScore=8.7480;MLEAC=1;MLEAF=0.500;MQ=40.96;MQ0=9;MQRankSum=-9.625;QD=0.12;ReadPosRankSum=3.001;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,80:164:50:50,0,1319 chrXII 1004056 . T C 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;DP=143;Dels=0.00;FS=3.039;HaplotypeScore=4.8046;MLEAC=1;MLEAF=0.500;MQ=43.28;MQ0=9;MQRankSum=-9.986;QD=0.10;ReadPosRankSum=0.432;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,74:143:44:44,0,1268 chrXII 1004176 . G A 181.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=10.06;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,16:18:24:214,24,0 chrXII 1004186 . A T 316 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=13.17;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:39:349,39,0 chrXII 1004257 . T C 1075 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.94;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1108,126,0 chrXII 1004687 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.75;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4347,480,0 chrXII 1004722 . T A 3873.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.65;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3873,423,0 chrXII 1004857 . A G 4681.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.50;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4681,537,0 chrXII 1004878 . G A 4861.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.6312;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.82;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4861,525,0 chrXII 1005004 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.25;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3782,414,0 chrXII 1005925 . T C 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=3.876;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.689;QD=19.90;ReadPosRankSum=1.690;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1685,195,0 chrXII 1005981 . T G 2108 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=8.8991;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.73;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2141,237,0 chrXII 1006048 . C G 156.03 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=1.93;SB=-4.891e+01 GT:AD:DP:GQ:PL 1/1:0,9:81:24:189,24,0 chrXII 1006086 . A G 1053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=24.9895;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.717;QD=17.55;ReadPosRankSum=0.239;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1086,120,0 chrXII 1006150 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.00;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1666,189,0 chrXII 1006227 . T C 1872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.701;QD=22.29;ReadPosRankSum=1.691;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1905,219,0 chrXII 1006283 . A T 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=65;Dels=0.00;FS=11.742;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.391;QD=21.54;ReadPosRankSum=2.892;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:1433,153,0 chrXII 1006293 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=17.87;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1177,129,0 chrXII 1006308 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=15.44;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1191,135,0 chrXII 1006345 . A G 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=95;Dels=0.00;FS=4.633;HaplotypeScore=8.0641;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.428;QD=16.05;ReadPosRankSum=1.695;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1558,177,0 chrXII 1006428 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=2.675;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.646;QD=23.60;ReadPosRankSum=2.414;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3281,372,0 chrXII 1006617 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.96;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2176,258,0 chrXII 1006629 . A G 2177 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.16;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2210,252,0 chrXII 1006710 . G A 2730 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.36;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2763,312,0 chrXII 1006859 . T A 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-1.295;QD=18.77;ReadPosRankSum=1.701;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2135,234,0 chrXII 1006860 . A G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=5.307;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.495;QD=18.49;ReadPosRankSum=1.485;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2104,237,0 chrXII 1006977 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.54;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2881,318,0 chrXII 1007069 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.8613;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.475;QD=22.61;ReadPosRankSum=1.701;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2611,291,0 chrXII 1007084 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.48;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2183,237,0 chrXII 1007205 . T G 1467 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.90;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1500,171,0 chrXII 1007289 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.49;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1855,207,0 chrXII 1007333 . A G 1438 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.79;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1471,168,0 chrXII 1007701 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2680,291,0 chrXII 1007751 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2715,309,0 chrXII 1008390 . C A 2986 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.18;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3019,330,0 chrXII 1008420 . C A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.47;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3303,363,0 chrXII 1008514 . T C 2532 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.23;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2565,285,0 chrXII 1008693 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-1.395;QD=20.12;ReadPosRankSum=1.684;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2950,339,0 chrXII 1008704 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.12;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3116,336,0 chrXII 1008786 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=2.735;HaplotypeScore=10.4891;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.122;QD=22.06;ReadPosRankSum=2.419;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3551,396,0 chrXII 1008837 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.034;QD=21.41;ReadPosRankSum=1.709;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3276,363,0 chrXII 1008873 . A T 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2948;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.400;QD=21.38;ReadPosRankSum=1.679;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2834,309,0 chrXII 1008909 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.71;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2940,321,0 chrXII 1009056 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3819,417,0 chrXII 1009176 . C T 4460.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.37;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4460,495,0 chrXII 1009478 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=22.00;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2167,234,0 chrXII 1009506 . T A 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.531;HaplotypeScore=4.2517;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.316;QD=19.52;ReadPosRankSum=1.672;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2278,258,0 chrXII 1009527 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.75;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2020,219,0 chrXII 1009536 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.79;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2044,219,0 chrXII 1009581 . T G 2222 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.83;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2255,252,0 chrXII 1009608 . T C 1970 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.41;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2003,231,0 chrXII 1009623 . G C 2187 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.63;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2220,252,0 chrXII 1009697 . T C 2324 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.32;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2357,276,0 chrXII 1009719 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.51;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2550,276,0 chrXII 1011169 . T G 3332.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.72;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3332,384,0 chrXII 1011170 . C A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.69;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3538,384,0 chrXII 1011388 . C T 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512;DP=83;Dels=0.00;FS=87.368;HaplotypeScore=11.8058;MLEAC=1;MLEAF=0.500;MQ=53.19;MQ0=0;MQRankSum=1.370;QD=1.11;ReadPosRankSum=-3.830;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,26:83:99:122,0,296 chrXII 1011520 . T G 1854 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1887,210,0 chrXII 1011621 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.48;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1902,219,0 chrXII 1011948 . G C 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DP=204;Dels=0.00;FS=48.539;HaplotypeScore=425.2426;MLEAC=1;MLEAF=0.500;MQ=54.29;MQ0=0;MQRankSum=2.549;QD=0.10;ReadPosRankSum=-7.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,26:204:51:51,0,284 chrXII 1012326 . C G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;DP=174;Dels=0.00;FS=204.815;HaplotypeScore=233.5976;MLEAC=1;MLEAF=0.500;MQ=52.83;MQ0=0;MQRankSum=5.675;QD=0.65;ReadPosRankSum=-9.900;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,45:174:99:143,0,881 chrXII 1013592 . A C 4282.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.59;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4282,495,0 chrXII 1014017 . C T 4532.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.4285;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.98;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4532,492,0 chrXII 1014203 . G T 183.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DP=248;Dels=0.00;FS=3.636;HaplotypeScore=202.6147;MLEAC=1;MLEAF=0.500;MQ=53.56;MQ0=0;MQRankSum=4.139;QD=0.74;ReadPosRankSum=-8.035;SB=-2.050e+02 GT:AD:DP:GQ:PL 0/1:192,55:248:99:213,0,2833 chrXII 1014332 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.83;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2869,306,0 chrXII 1014437 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.44;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2284,252,0 chrXII 1014538 . A G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.705;QD=19.02;ReadPosRankSum=1.050;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2448,273,0 chrXII 1014541 . A G 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=138;Dels=0.00;FS=2.894;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=1.347;QD=16.70;ReadPosRankSum=1.763;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2337,273,0 chrXII 1014649 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.44;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3581,396,0 chrXII 1014670 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.6008;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.03;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3545,411,0 chrXII 1014976 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.16;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4586,492,0 chrXII 1015108 . G A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.88;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4289,459,0 chrXII 1015543 . T A 1705 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=17.2164;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.43;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1738,198,0 chrXII 1015598 . C G 2106 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.14;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2139,255,0 chrXII 1015774 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.21;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3528,387,0 chrXII 1016012 . C G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.75;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3371,393,0 chrXII 1016099 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.93;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3531,399,0 chrXII 1016198 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.80;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3447,372,0 chrXII 1016453 . C G 2831 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2864,312,0 chrXII 1016743 . T C 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=6.751;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.313;QD=21.31;ReadPosRankSum=2.357;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2292,258,0 chrXII 1016924 . A G 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=97;Dels=0.00;FS=3.104;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.511;QD=19.89;ReadPosRankSum=1.585;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,93:97:99:1962,222,0 chrXII 1017044 . T C 2763 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2796,315,0 chrXII 1017596 . C A 2985 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.79;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3018,330,0 chrXII 1017718 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2266,255,0 chrXII 1018933 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.24;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2348,261,0 chrXII 1019126 . A T 349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.537;DP=42;Dels=0.00;FS=5.059;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;MQRankSum=-3.525;QD=8.31;ReadPosRankSum=4.445;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:9,33:42:51:382,51,0 chrXII 1019156 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.46;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1123,126,0 chrXII 1019199 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.61;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1780,198,0 chrXII 1019284 . C T 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.053;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.306;QD=22.37;ReadPosRankSum=1.053;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1174,113,0 chrXII 1019357 . G T 1876 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.88;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1909,210,0 chrXII 1019479 . G T 2441 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.39;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2474,270,0 chrXII 1019764 . C G 3433.01 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.7301;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.32;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3433,387,0 chrXII 1019765 . T C 3349.01 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.8784;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.20;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3349,387,0 chrXII 1019768 . C A 3632.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=22.28;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3632,399,0 chrXII 1020076 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.00;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2717,300,0 chrXII 1020118 . A T 2473 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=8.2193;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.96;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2506,270,0 chrXII 1020119 . G T 2300 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=8.2193;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.33;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2333,261,0 chrXII 1020142 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.271;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.056;QD=20.03;ReadPosRankSum=1.704;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2497,285,0 chrXII 1020239 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=4.232;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.784;QD=20.36;ReadPosRankSum=1.699;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2232,252,0 chrXII 1020245 . T G 2064 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.85;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2097,237,0 chrXII 1020463 . T C 1993 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.66;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2026,228,0 chrXII 1020492 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.01;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1888,219,0 chrXII 1020500 . A G 1835 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.35;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1868,210,0 chrXII 1020551 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=17.14;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1524,171,0 chrXII 1020605 . T C 2130 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2163,246,0 chrXII 1020763 . A C 2183 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8093;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.40;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2216,249,0 chrXII 1020964 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.60;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2020,219,0 chrXII 1020965 . G T 1982 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=21.31;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2015,219,0 chrXII 1020991 . T G 1731 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.86;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1764,198,0 chrXII 1021039 . T C 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.027;QD=21.36;ReadPosRankSum=1.677;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2724,300,0 chrXII 1021226 . A C 2250 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=17.44;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2283,261,0 chrXII 1021249 . T G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=3.035;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;MQRankSum=1.161;QD=17.21;ReadPosRankSum=2.382;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2528,285,0 chrXII 1021261 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=18.30;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2686,285,0 chrXII 1021262 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=17.97;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2638,282,0 chrXII 1021283 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=3.209;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=0.078;QD=16.41;ReadPosRankSum=1.706;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2232,261,0 chrXII 1021376 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.87;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3121,342,0 chrXII 1021739 . A G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=115;Dels=0.00;FS=2.875;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-1.701;QD=22.63;ReadPosRankSum=2.407;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2635,297,0 chrXII 1021793 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.30;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2773,309,0 chrXII 1021808 . T G 2760 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.15;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2793,318,0 chrXII 1022087 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.80;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3323,372,0 chrXII 1022295 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.47;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2482,273,0 chrXII 1022477 . G T 3074 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.20;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3107,339,0 chrXII 1022570 . T G 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.1637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.921;QD=23.54;ReadPosRankSum=2.412;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4614,528,0 chrXII 1022675 . T C 5142.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.97;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5142,591,0 chrXII 1022756 . C G 5767.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=16.0696;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.60;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:5767,657,0 chrXII 1022895 . T C 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=3.087;HaplotypeScore=9.6540;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.137;QD=22.42;ReadPosRankSum=1.656;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5134,570,0 chrXII 1022933 . C T 5519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.367;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=20.0107;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.732;QD=22.90;ReadPosRankSum=-1.042;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5519,603,0 chrXII 1023165 . A G 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=204;Dels=0.00;FS=8.229;HaplotypeScore=9.2394;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.081;QD=22.28;ReadPosRankSum=3.272;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4545,507,0 chrXII 1023320 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3672,396,0 chrXII 1023413 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8243;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.45;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3704,396,0 chrXII 1023437 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5735;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.392;QD=20.64;ReadPosRankSum=1.712;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3592,408,0 chrXII 1023823 . C A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.6558;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.58;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3491,381,0 chrXII 1024016 . T C 568 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.75;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:66:601,66,0 chrXII 1024017 . C T 573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.158;QD=17.36;ReadPosRankSum=1.523;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:66:606,66,0 chrXII 1024103 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1463,165,0 chrXII 1024168 . G C 1745 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1778,201,0 chrXII 1024747 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.35;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2380,267,0 chrXII 1024937 . C T 685 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=17.12;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:84:718,84,0 chrXII 1024948 . C T 623 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.80;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:656,72,0 chrXII 1025030 . T C 626 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=17.39;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:659,78,0 chrXII 1025078 . C G 1141 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1174,132,0 chrXII 1025152 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.52;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1656,183,0 chrXII 1025374 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.31;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2807,309,0 chrXII 1025702 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.49;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3429,381,0 chrXII 1025733 . C G 3497.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.47;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3497,399,0 chrXII 1025753 . T C 3115 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.74;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3148,354,0 chrXII 1025801 . T C 3011 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.66;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3044,357,0 chrXII 1026077 . A C 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=146;Dels=0.00;FS=6.022;HaplotypeScore=11.4009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.097;QD=22.56;ReadPosRankSum=2.911;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3294,363,0 chrXII 1026208 . G C 2964 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.45;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2997,336,0 chrXII 1026243 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.12;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2800,300,0 chrXII 1026338 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.55;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2435,261,0 chrXII 1026504 . C G 1839 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.64;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1872,216,0 chrXII 1026527 . A T 1155 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.79;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1188,129,0 chrXII 1026588 . A G 686 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:81:719,81,0 chrXII 1026668 . C T 387 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=11.38;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:45:420,45,0 chrXII 1026889 . T C 2235 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.11;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2268,252,0 chrXII 1027477 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=5.1770;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.28;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4522,510,0 chrXII 1027483 . A G 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=215;Dels=0.00;FS=9.584;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.248;QD=18.97;ReadPosRankSum=2.334;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4079,468,0 chrXII 1027573 . T C 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.363;QD=22.00;ReadPosRankSum=1.716;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4751,540,0 chrXII 1027717 . G A 5632.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=17.3773;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.18;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5632,609,0 chrXII 1028133 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.76;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3128,339,0 chrXII 1028477 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.0700;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.58;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4380,495,0 chrXII 1028782 . T A 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.924;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.151;QD=23.32;ReadPosRankSum=1.714;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4547,492,0 chrXII 1030239 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.84;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3003,330,0 chrXII 1030426 . T A 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.909;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;MQRankSum=-1.281;QD=19.94;ReadPosRankSum=1.704;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2486,279,0 chrXII 1030430 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.962;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=-0.668;QD=20.06;ReadPosRankSum=1.678;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2580,288,0 chrXII 1030457 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=18.18;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2469,273,0 chrXII 1030577 . T C 1996 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=17.36;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2029,225,0 chrXII 1030580 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=18.42;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2114,234,0 chrXII 1030604 . T G 1381 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;MQRankSum=-0.866;QD=13.28;ReadPosRankSum=0.366;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1414,165,0 chrXII 1030608 . C T 1440 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=14.12;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1473,162,0 chrXII 1030614 . A G 1352 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=13.80;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1385,156,0 chrXII 1030831 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.57;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3583,408,0 chrXII 1031139 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.4523;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.05;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4309,462,0 chrXII 1031430 . G A 818.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.321;DP=218;Dels=0.00;FS=28.206;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=45.01;MQ0=0;MQRankSum=-4.664;QD=3.75;ReadPosRankSum=-6.917;SB=-4.330e+02 GT:AD:DP:GQ:PL 0/1:153,65:218:99:848,0,1626 chrXII 1031433 . C A 647.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.251;DP=219;Dels=0.00;FS=23.457;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=45.64;MQ0=0;MQRankSum=-4.038;QD=2.95;ReadPosRankSum=-8.053;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:162,57:219:99:677,0,1720 chrXII 1031436 . T A 484.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.222;DP=220;Dels=0.00;FS=19.768;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=45.99;MQ0=0;MQRankSum=-5.969;QD=2.20;ReadPosRankSum=-9.204;SB=-2.770e+02 GT:AD:DP:GQ:PL 0/1:167,53:220:99:514,0,1975 chrXII 1031439 . G A 296.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.734;DP=219;Dels=0.00;FS=13.526;HaplotypeScore=7.2035;MLEAC=1;MLEAF=0.500;MQ=46.46;MQ0=0;MQRankSum=-5.616;QD=1.35;ReadPosRankSum=-9.661;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:171,45:219:99:326,0,2134 chrXII 1031518 . A G 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.532;DP=222;Dels=0.00;FS=7.499;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.682;QD=20.77;ReadPosRankSum=3.788;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:5,216:222:99:4610,537,0 chrXII 1031541 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.64;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4127,465,0 chrXII 1031571 . G A 2446 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7903;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=16.87;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2479,270,0 chrXII 1031842 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=23.41;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2866,312,0 chrXII 1032807 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.74;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3651,414,0 chrXII 1032821 . A C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0096;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.695;QD=20.18;ReadPosRankSum=1.714;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,196:200:99:4036,465,0 chrXII 1032857 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4054;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.68;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3888,417,0 chrXII 1032869 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=3.720;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.223;QD=17.73;ReadPosRankSum=1.713;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3225,375,0 chrXII 1033274 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.7818;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2935,318,0 chrXII 1033418 . T C 3089 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3122,357,0 chrXII 1033763 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2544,279,0 chrXII 1033895 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.06;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2666,300,0 chrXII 1034027 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.1347;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.91;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2520,270,0 chrXII 1034073 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.26;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2755,309,0 chrXII 1034204 . A T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.38;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3315,354,0 chrXII 1034221 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.17;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3115,351,0 chrXII 1034264 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.53;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2875,318,0 chrXII 1036112 . T C 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.217;QD=23.41;ReadPosRankSum=1.705;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3030,342,0 chrXII 1036568 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.49;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2617,282,0 chrXII 1037166 . A G 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=10.8865;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.982;QD=22.47;ReadPosRankSum=1.680;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3044,342,0 chrXII 1037208 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=3.211;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.598;QD=21.30;ReadPosRankSum=1.687;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3323,387,0 chrXII 1037313 . A G 2881 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.87;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2914,324,0 chrXII 1038435 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.688;DP=178;Dels=0.00;FS=7.802;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-2.253;QD=23.22;ReadPosRankSum=3.803;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:5,172:178:99:4133,459,0 chrXII 1038631 . A G 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7838;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.184;QD=20.79;ReadPosRankSum=1.616;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3742,429,0 chrXII 1038948 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=6.456;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.338;QD=22.42;ReadPosRankSum=2.319;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2566,294,0 chrXII 1039435 . T A 2239 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2272,246,0 chrXII 1039504 . T C 3035 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3068,354,0 chrXII 1039736 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.222;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.110;QD=21.89;ReadPosRankSum=1.705;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2813,327,0 chrXII 1040029 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.501;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.228;QD=23.92;ReadPosRankSum=1.698;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2497,276,0 chrXII 1040062 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.21;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3098,330,0 chrXII 1040071 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.577;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.262;QD=20.35;ReadPosRankSum=1.707;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2861,318,0 chrXII 1040218 . G A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.4742;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.96;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3402,369,0 chrXII 1040254 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.86;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3188,360,0 chrXII 1040317 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.3411;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.55;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3115,339,0 chrXII 1040530 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.82;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4107,456,0 chrXII 1040759 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.05;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3836,429,0 chrXII 1040785 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.71;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4028,435,0 chrXII 1041385 . A T 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=3.343;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.686;QD=24.17;ReadPosRankSum=1.662;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3601,387,0 chrXII 1041713 . A G 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=3.645;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.236;QD=22.79;ReadPosRankSum=1.677;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2905,324,0 chrXII 1041774 . A G 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=106;Dels=0.00;FS=6.103;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.324;QD=21.22;ReadPosRankSum=2.934;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2282,258,0 chrXII 1041886 . T C 2882 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.04;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2915,342,0 chrXII 1041901 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.65;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2782,312,0 chrXII 1042079 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.52;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2220,240,0 chrXII 1042132 . A G 2413 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.98;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2446,270,0 chrXII 1042180 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.431;QD=23.22;ReadPosRankSum=0.859;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2726,285,0 chrXII 1042234 . A T 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.479;QD=23.29;ReadPosRankSum=1.690;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1943,216,0 chrXII 1042365 . C A 2856 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.03;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2889,312,0 chrXII 1042381 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.02;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2620,294,0 chrXII 1042503 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.160;QD=19.87;ReadPosRankSum=1.705;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2636,303,0 chrXII 1042570 . A G 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5870;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.218;QD=20.82;ReadPosRankSum=1.686;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3198,369,0 chrXII 1042844 . T C 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.557;HaplotypeScore=8.1946;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.509;QD=22.38;ReadPosRankSum=1.620;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2114,240,0 chrXII 1043063 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.54;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3248,351,0 chrXII 1043089 . C A 3039 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.0075;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.20;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3072,345,0 chrXII 1043157 . G C 2446 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2942;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.84;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2479,279,0 chrXII 1043284 . A C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.277;QD=22.91;ReadPosRankSum=1.697;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2301,255,0 chrXII 1043638 . T C 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.133;QD=22.79;ReadPosRankSum=1.694;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2107,240,0 chrXII 1043701 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.56;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3659,393,0 chrXII 1043895 . A G 2996 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.25;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3029,339,0 chrXII 1043906 . T C 2879 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.17;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2912,327,0 chrXII 1044159 . C A 2198 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=25.26;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2231,243,0 chrXII 1044294 . A G 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=5.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.249;QD=22.94;ReadPosRankSum=0.161;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2006,228,0 chrXII 1044654 . A G 2683 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.33;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2716,306,0 chrXII 1044768 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.22;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1934,207,0 chrXII 1044772 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.83;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1765,198,0 chrXII 1045329 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2904,318,0 chrXII 1046184 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.17;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2886,309,0 chrXII 1046304 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3181,354,0 chrXII 1046803 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2416,261,0 chrXII 1046930 . A C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.625;QD=20.03;ReadPosRankSum=1.661;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1996,234,0 chrXII 1047100 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.01;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2127,231,0 chrXII 1047210 . A T 3080 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.10;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3113,342,0 chrXII 1047367 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.10;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2917,315,0 chrXII 1047369 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.739;QD=17.88;ReadPosRankSum=1.709;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2715,312,0 chrXII 1047516 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.34;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3076,336,0 chrXII 1047572 . A G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.385;QD=22.98;ReadPosRankSum=1.700;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2538,285,0 chrXII 1048002 . C A 2361 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.61;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2394,264,0 chrXII 1048356 . C G 2930 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2963,345,0 chrXII 1048740 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.26;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2848,321,0 chrXII 1048806 . A T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.74;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3340,363,0 chrXII 1048932 . A T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3365,363,0 chrXII 1049196 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5466;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.32;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3575,387,0 chrXII 1049481 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.1841;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.70;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3555,396,0 chrXII 1050004 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2830,309,0 chrXII 1050090 . A G 2795 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.10;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2828,315,0 chrXII 1050100 . A G 2537 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.32;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2570,300,0 chrXII 1051259 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.39;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3830,411,0 chrXII 1051488 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=135;Dels=0.00;FS=2.988;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.675;QD=21.95;ReadPosRankSum=2.357;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2996,348,0 chrXII 1052289 . T C 515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1800;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;MQRankSum=-0.995;QD=10.10;ReadPosRankSum=2.354;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:63:548,63,0 chrXII 1052344 . A T 65.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.877;DP=96;Dels=0.00;FS=207.859;HaplotypeScore=33.6340;MLEAC=1;MLEAF=0.500;MQ=48.92;MQ0=0;MQRankSum=-7.859;QD=0.68;ReadPosRankSum=-0.467;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:59,37:96:95:95,0,1128 chrXII 1052357 . A T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;DP=120;Dels=0.00;FS=138.659;HaplotypeScore=29.5946;MLEAC=1;MLEAF=0.500;MQ=48.28;MQ0=0;MQRankSum=-6.786;QD=0.14;ReadPosRankSum=-1.178;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,32:120:47:47,0,1737 chrXII 1052563 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.247;QD=22.63;ReadPosRankSum=1.600;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3553,408,0 chrXII 1053098 . A G 1066 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.74;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1099,126,0 chrXII 1053367 . A G 802 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:93:835,93,0 chrXII 1053478 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.27;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1625,177,0 chrXII 1053517 . T A 1711 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.12;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1744,201,0 chrXII 1053841 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2977;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.77;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3507,387,0 chrXII 1054279 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.64;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2113,231,0 chrXII 1054333 . A G 2143 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.01;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2176,249,0 chrXII 1054575 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1902,213,0 chrXII 1055114 . T A 2027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=3.040;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.182;QD=23.03;ReadPosRankSum=2.394;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2060,231,0 chrXII 1055417 . T C 2356 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.54;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2389,270,0 chrXII 1055554 . T C 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=4.065;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.917;QD=21.49;ReadPosRankSum=1.698;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2246,252,0 chrXII 1055717 . T C 2325 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2358,261,0 chrXII 1055872 . A T 2779 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2812,309,0 chrXII 1056105 . G C 2251 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2284,261,0 chrXII 1056565 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.14;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2828,318,0 chrXII 1056569 . G C 2877 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.57;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,142:147:99:2910,327,0 chrXII 1056760 . G C 4231.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2615;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.75;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4231,489,0 chrXII 1056900 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.755;QD=23.44;ReadPosRankSum=-0.844;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3656,396,0 chrXII 1056984 . A G 2686 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.38;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2719,303,0 chrXII 1057013 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.02;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2742,312,0 chrXII 1057047 . G T 3157 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=7.1479;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.56;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3190,351,0 chrXII 1057074 . A C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.418;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.318;QD=22.63;ReadPosRankSum=1.706;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3065,339,0 chrXII 1057082 . A G 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=6.767;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.106;QD=21.99;ReadPosRankSum=2.392;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2870,315,0 chrXII 1057759 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=179;Dels=0.00;FS=6.345;HaplotypeScore=11.5802;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.277;QD=21.87;ReadPosRankSum=2.422;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3914,438,0 chrXII 1058607 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.14;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2740,294,0 chrXII 1058624 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.18;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2650,291,0 chrXII 1058732 . T C 2813 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.25;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2846,321,0 chrXII 1058785 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=124;Dels=0.00;FS=3.656;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.014;QD=21.31;ReadPosRankSum=1.676;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2675,300,0 chrXII 1058831 . C G 2435 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.12;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2468,285,0 chrXII 1058891 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.047;HaplotypeScore=108.0205;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.655;QD=21.08;ReadPosRankSum=1.703;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2541,288,0 chrXII 1058899 . A G 2497 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=116.7363;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.98;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2530,297,0 chrXII 1059052 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.95;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2212,252,0 chrXII 1059176 . C A 1548 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=19.11;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1581,174,0 chrXII 1059316 . A T 746 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=19.63;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:779,84,0 chrXII 1059322 . T C 620 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=20.67;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:653,78,0 chrXII 1059332 . A G 360 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=21.18;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:393,45,0 chrXII 1059333 . T C 368 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=21.65;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:401,45,0 chrXII 1059335 . C T 339 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.19;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:42:372,42,0 chrXII 1059338 . C T 413 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.77;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:446,48,0 chrXII 1059342 . C T 547 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=27.0536;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=18.23;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:63:580,63,0 chrXII 1059364 . A G 541 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=12.88;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:66:574,66,0 chrXII 1059372 . G A 564 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=0;QD=12.00;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:66:597,66,0 chrXII 1059373 . G A 547 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.631;DP=47;Dels=0.00;FS=18.675;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=0;MQRankSum=1.458;QD=11.64;ReadPosRankSum=1.371;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:3,44:47:66:580,66,0 chrXII 1059377 . A T 536 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=1;QD=10.94;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:63:569,63,0 chrXII 1059378 . A C 543 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=1;QD=11.08;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:66:576,66,0 chrXII 1059394 . G T 687 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=3;QD=9.28;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:81:720,81,0 chrXII 1059428 . A T 1432 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=120;Dels=0.00;FS=3.207;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=7;MQRankSum=0.353;QD=11.93;ReadPosRankSum=1.701;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1465,162,0 chrXII 1059496 . G A 1051 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=25;QD=13.14;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1084,117,0 chrXII 1059505 . A T 781 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=24;QD=13.02;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:90:814,90,0 chrXII 1059553 . T C 370.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;DP=62;Dels=0.00;FS=6.646;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=16;MQRankSum=-1.522;QD=5.97;ReadPosRankSum=-2.227;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:25,37:62:99:400,0,351 chrXII 1059564 . T A 816 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=10;QD=14.84;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:849,99,0 chrXII 1059587 . T C 397.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.742;DP=92;Dels=0.00;FS=0.900;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=30.83;MQ0=17;MQRankSum=-1.368;QD=4.32;ReadPosRankSum=1.506;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:49,43:92:99:427,0,701 chrXII 1059588 . T G 1339 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=97;Dels=0.00;FS=2.603;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=19;MQRankSum=-2.390;QD=13.80;ReadPosRankSum=2.910;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1372,165,0 chrXII 1059640 . G T 2487 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=18;QD=14.54;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2520,273,0 chrXII 1059652 . G C 2281 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=17;QD=13.26;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2314,270,0 chrXII 1059690 . A C 713.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.780;DP=190;Dels=0.00;FS=6.223;HaplotypeScore=18.9860;MLEAC=1;MLEAF=0.500;MQ=35.09;MQ0=7;MQRankSum=-3.116;QD=3.75;ReadPosRankSum=2.463;SB=-4.890e+02 GT:AD:DP:GQ:PL 0/1:49,140:190:99:743,0,217 chrXII 1059704 . A C 486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=134;Dels=0.00;FS=8.699;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=4;MQRankSum=0.605;QD=3.63;ReadPosRankSum=1.705;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:60:519,60,0 chrXII 1059711 . A T 379 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=132;Dels=0.00;FS=9.611;HaplotypeScore=115.4802;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=4;MQRankSum=-1.732;QD=2.87;ReadPosRankSum=1.705;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:48:412,48,0 chrXII 1059730 . T C 743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=2;MQRankSum=0.729;QD=5.05;ReadPosRankSum=1.708;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:90:776,90,0 chrXII 1059731 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=2;QD=5.58;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,146:149:99:870,99,0 chrXII 1059753 . T A 814.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;DP=162;Dels=0.00;FS=80.264;HaplotypeScore=1.8773;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=-4.154;QD=5.02;ReadPosRankSum=1.799;SB=-3.870e+02 GT:AD:DP:GQ:PL 0/1:21,140:162:99:844,0,240 chrXII 1059775 . G T 1404 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=1;QD=9.49;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1437,171,0 chrXII 1059813 . T C 1119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.385;DP=126;Dels=0.00;FS=33.430;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=35.70;MQ0=4;MQRankSum=-4.200;QD=8.88;ReadPosRankSum=1.657;SB=-6.560e+02 GT:AD:DP:GQ:PL 0/1:37,88:126:99:1149,0,425 chrXII 1059814 . T C 1120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;DP=126;Dels=0.00;FS=33.021;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=36.07;MQ0=4;MQRankSum=-3.932;QD=8.89;ReadPosRankSum=1.704;SB=-6.900e+02 GT:AD:DP:GQ:PL 0/1:37,89:126:99:1150,0,409 chrXII 1059832 . A G 1063.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.359;DP=128;Dels=0.00;FS=11.322;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=37.83;MQ0=6;MQRankSum=-2.297;QD=8.30;ReadPosRankSum=2.107;SB=-2.830e+02 GT:AD:DP:GQ:PL 0/1:39,87:128:99:1093,0,367 chrXII 1059833 . C T 1044.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;DP=128;Dels=0.00;FS=6.833;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=37.62;MQ0=6;MQRankSum=-2.157;QD=8.16;ReadPosRankSum=1.330;SB=-2.930e+02 GT:AD:DP:GQ:PL 0/1:37,90:128:99:1074,0,299 chrXII 1059852 . C T 130.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;DP=181;Dels=0.00;FS=0.749;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=34.07;MQ0=5;MQRankSum=0.824;QD=0.72;ReadPosRankSum=2.205;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,40:181:99:160,0,1627 chrXII 1059876 . G T 1819.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.958;DP=218;Dels=0.00;FS=1.559;HaplotypeScore=10.7715;MLEAC=1;MLEAF=0.500;MQ=32.25;MQ0=4;MQRankSum=-0.221;QD=8.34;ReadPosRankSum=-1.612;SB=-2.590e+02 GT:AD:DP:GQ:PL 0/1:36,181:218:60:1849,0,60 chrXII 1059928 . C T 5571.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.473;DP=446;Dels=0.00;FS=50.731;HaplotypeScore=37.5105;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;MQRankSum=3.683;QD=12.49;ReadPosRankSum=-1.545;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:63,383:446:99:5571,285,0 chrXII 1060015 . A G 1712 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.564;DP=135;Dels=0.00;FS=31.150;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=3;MQRankSum=0.048;QD=12.68;ReadPosRankSum=3.624;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:5,130:135:99:1745,210,0 chrXII 1060018 . G A 1474 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=3;QD=12.71;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1507,177,0 chrXII 1060024 . T C 834 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=4;QD=10.56;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:867,108,0 chrXII 1060030 . G A 379 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.28;MQ0=4;QD=9.02;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:412,54,0 chrXII 1060036 . T C 277 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DP=33;Dels=0.00;FS=4.058;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.08;MQ0=5;MQRankSum=-1.114;QD=8.39;ReadPosRankSum=1.609;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:39:310,39,0 chrXII 1060063 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.74;MQ0=7;QD=0.24;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,51:51:6:43,6,0 chrXII 1060064 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.74;MQ0=7;QD=0.24;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,51:51:6:43,6,0 chrXII 1060077 . T C 306 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=102;Dels=0.00;FS=51.132;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.34;MQ0=9;MQRankSum=-1.576;QD=3.00;ReadPosRankSum=2.903;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:3,99:102:42:339,42,0 chrXII 1060078 . T G 373 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=111;Dels=0.00;FS=39.337;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=9;MQRankSum=-2.951;QD=3.36;ReadPosRankSum=2.694;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:3,108:111:48:406,48,0 chrXII 1060099 . C T 2513 filter AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=9;QD=11.02;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,228:228:99:2546,282,0 chrXII 1060207 . A G 1406.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.881;DP=295;Dels=0.00;FS=169.788;HaplotypeScore=23.9482;MLEAC=1;MLEAF=0.500;MQ=35.55;MQ0=50;MQRankSum=-10.911;QD=4.77;ReadPosRankSum=-2.119;SB=-8.300e+02 GT:AD:DP:GQ:PL 0/1:102,191:295:99:1436,0,1957 chrXII 1060218 . A G 792.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171;DP=255;Dels=0.00;FS=117.072;HaplotypeScore=13.6490;MLEAC=1;MLEAF=0.500;MQ=36.64;MQ0=59;MQRankSum=-10.466;QD=3.11;ReadPosRankSum=-3.250;SB=-2.690e+02 GT:AD:DP:GQ:PL 0/1:103,149:255:99:822,0,2004 chrXII 1060224 . C T 1958.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.215;DP=245;Dels=0.00;FS=143.822;HaplotypeScore=8.7190;MLEAC=1;MLEAF=0.500;MQ=36.71;MQ0=65;MQRankSum=10.823;QD=7.99;ReadPosRankSum=6.378;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:146,99:245:99:1988,0,645 chrXII 1060255 . C T 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;DP=197;Dels=0.00;FS=16.201;HaplotypeScore=8.1283;MLEAC=1;MLEAF=0.500;MQ=39.61;MQ0=90;MQRankSum=-6.080;QD=0.35;ReadPosRankSum=-2.152;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:99,98:197:99:99,0,1925 chrXII 1060315 . G C 1015.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DP=277;Dels=0.00;FS=7.190;HaplotypeScore=8.8909;MLEAC=1;MLEAF=0.500;MQ=28.58;MQ0=106;MQRankSum=6.444;QD=3.66;ReadPosRankSum=-4.020;SB=-3.120e+02 GT:AD:DP:GQ:PL 0/1:177,98:277:99:1045,0,987 chrXII 1060363 . T G 3978.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=301;Dels=0.00;FS=12.889;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=99;MQRankSum=-0.724;QD=13.22;ReadPosRankSum=2.925;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:4,295:301:99:3978,459,0 chrXII 1060386 . C T 4925.01 filter AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=78;QD=16.20;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,302:304:99:4925,537,0 chrXII 1060417 . C T 4237.01 filter AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=90;QD=14.41;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:4237,486,0 chrXII 1060444 . C T 3149 filter AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=37.34;MQ0=88;QD=12.91;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,243:244:99:3182,366,0 chrXII 1060460 . A G 3411.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=83;MQRankSum=-2.033;QD=13.75;ReadPosRankSum=2.241;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:2,245:248:99:3411,390,0 chrXII 1060547 . G A 1970.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.319;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=19.7741;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=38;MQRankSum=-1.710;QD=9.21;ReadPosRankSum=1.490;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:61,153:214:99:2000,0,497 chrXII 1060633 . G A 402 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.88;MQ0=39;QD=6.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:48:435,48,0 chrXII 1060901 . C A 650 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.85;MQ0=48;QD=6.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:103:78:683,78,0 chrXII 1060918 . A G 654 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.29;MQ0=46;QD=5.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,114:116:78:687,78,0 chrXII 1060944 . A G 1227 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=34;QD=8.76;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,138:140:99:1260,144,0 chrXII 1061083 . A G 4241.01 filter AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=69;QD=14.38;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,295:295:99:4241,480,0 chrXII 1061087 . A G 130.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.905;DP=303;Dels=0.00;FS=0.691;HaplotypeScore=10.3906;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=63;MQRankSum=-3.154;QD=0.43;ReadPosRankSum=-0.449;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:228,73:303:99:160,0,3394 chrXII 1061124 . G A 1326.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;DP=343;Dels=0.00;FS=14.087;HaplotypeScore=5.5715;MLEAC=1;MLEAF=0.500;MQ=36.57;MQ0=15;MQRankSum=-2.297;QD=3.87;ReadPosRankSum=0.240;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:186,157:343:99:1356,0,2704 chrXII 1061143 . G C 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.095;DP=303;Dels=0.00;FS=5.514;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=3;MQRankSum=0.678;QD=14.46;ReadPosRankSum=0.828;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,301:303:99:4381,507,0 chrXII 1061159 . A G 3118 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=11.18;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,279:279:99:3151,360,0 chrXII 1061174 . T G 2325 filter AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=8;QD=8.55;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:2358,264,0 chrXII 1061183 . C T 1846 filter AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=10;QD=6.69;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:1879,219,0 chrXII 1061193 . A C 1420 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=282;Dels=0.00;FS=2.953;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=20;MQRankSum=0.533;QD=5.04;ReadPosRankSum=2.431;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,278:282:99:1453,165,0 chrXII 1061217 . A C 2104 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=19.0023;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=49;MQRankSum=-1.732;QD=6.70;ReadPosRankSum=1.719;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,310:314:99:2137,243,0 chrXII 1061288 . G A 9433.01 filter AC=2;AF=1.00;AN=2;DP=486;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=31;QD=19.41;SB=-4.650e+03 GT:AD:DP:GQ:PL 1/1:0,486:486:99:9433,1053,0 chrXII 1061307 . T C 9558.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=502;Dels=0.00;FS=3.290;HaplotypeScore=8.9189;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=5;MQRankSum=-0.645;QD=19.04;ReadPosRankSum=1.669;SB=-4.312e+03 GT:AD:DP:GQ:PL 1/1:1,501:502:99:9558,1089,0 chrXII 1061392 . T G 3057 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=226;Dels=0.00;FS=7.534;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=36;MQRankSum=-1.600;QD=13.53;ReadPosRankSum=2.396;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:3,218:226:99:3090,351,0 chrXII 1061402 . A C 3102 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.947;DP=218;Dels=0.00;FS=15.620;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=44;MQRankSum=-2.766;QD=14.23;ReadPosRankSum=4.784;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:9,209:218:99:3135,363,0 chrXII 1061521 . A T 2417 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6206;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=10;MQRankSum=-1.535;QD=12.15;ReadPosRankSum=2.410;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:2450,267,0 chrXII 1061526 . A G 2299 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=8;MQRankSum=-1.656;QD=11.49;ReadPosRankSum=2.411;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:2332,267,0 chrXII 1061545 . T G 2168 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=13;QD=14.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2201,249,0 chrXII 1061546 . G A 2225 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=13;MQRankSum=-1.050;QD=15.34;ReadPosRankSum=-1.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2258,249,0 chrXII 1061656 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.12;MQ0=31;QD=0.69;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,34:36:6:56,6,0 chrXII 1062123 . A T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=3.80;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:54,6,0 chrXII 1062124 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=3.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrXII 1062125 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=3.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrXII 1062128 . A T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=3.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrXII 1062129 . A C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=3.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrXII 1062165 . C T 398 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.99;MQ0=0;QD=17.30;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:57:431,57,0 chrXII 1062180 . C T 363 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.76;MQ0=1;QD=13.96;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:54:396,54,0 chrXII 1062189 . A G 389 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.67;MQ0=1;QD=13.89;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:422,57,0 chrXII 1062194 . T A 549 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=1;QD=16.15;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:582,75,0 chrXII 1062196 . A G 571 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=21.11;MQ0=1;QD=14.27;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,36:40:78:604,78,0 chrXII 1062274 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.69;MQ0=0;QD=12.30;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:968,120,0 chrXII 1062288 . T G 600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=8.846;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=20.05;MQ0=0;MQRankSum=-0.979;QD=8.70;ReadPosRankSum=1.682;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:81:633,81,0 chrXII 1062291 . A C 562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.19;MQ0=0;MQRankSum=-1.624;QD=8.78;ReadPosRankSum=1.353;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:75:595,75,0 chrXII 1062304 . T C 236 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.44;MQ0=0;QD=8.14;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:36:269,36,0 chrXII 1062308 . T A 210 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=0;QD=8.40;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:33:243,33,0 chrXII 1062351 . G A 190 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=13.57;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:223,30,0 chrXII 1062352 . C T 187 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=13.36;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:220,30,0 chrXII 1062354 . T A 190 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=13.57;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:223,30,0 chrXII 1062359 . C G 210 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=11.67;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:243,33,0 chrXII 1062365 . T G 216 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=12.00;SB=-1.080e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:249,33,0 chrXII 1062368 . A T 144.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.93;MQ0=0;MQRankSum=-0.510;QD=8.48;ReadPosRankSum=-1.981;SB=-1.751e-01 GT:AD:DP:GQ:PL 0/1:4,13:17:11:174,0,11 chrXII 1062381 . C G 386 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=20.5442;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=1;QD=12.87;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:54:419,54,0 chrXII 1062382 . C T 450 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=20.5442;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=1;QD=15.00;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:60:483,60,0 chrXII 1062383 . T C 431 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=1;QD=14.37;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:60:464,60,0 chrXII 1062441 . G A 999 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=2;QD=10.63;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1032,120,0 chrXII 1062474 . A T 807 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.54;MQ0=1;QD=11.05;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:93:840,93,0 chrXII 1062492 . A G 772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.68;MQ0=1;MQRankSum=0.824;QD=12.45;ReadPosRankSum=1.675;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:93:805,93,0 chrXII 1062600 . A T 49.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=1;QD=5.55;SB=-2.891e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:82,9,0 chrXII 1062630 . C G 202.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.740;DP=26;Dels=0.00;FS=26.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=5;MQRankSum=3.464;QD=7.77;ReadPosRankSum=-0.039;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:11,15:26:27:235,27,0 chrXII 1062634 . T A 143.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.285;DP=26;Dels=0.00;FS=26.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=5;MQRankSum=3.464;QD=5.50;ReadPosRankSum=-0.117;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:11,15:26:21:176,21,0 chrXII 1062635 . G A 118.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=26;Dels=0.00;FS=26.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=5;MQRankSum=3.464;QD=4.54;ReadPosRankSum=-0.039;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:11,15:26:18:151,18,0 chrXII 1062636 . A G 115.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.608;DP=26;Dels=0.00;FS=26.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=5;MQRankSum=3.464;QD=4.43;ReadPosRankSum=-0.195;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:11,15:26:18:148,18,0 chrXII 1062638 . T C 140.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530;DP=26;Dels=0.00;FS=26.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=5;MQRankSum=3.464;QD=5.39;ReadPosRankSum=-0.428;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:11,15:26:21:173,21,0 chrXII 1062639 . G C 146.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.207;DP=26;Dels=0.00;FS=26.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=5;MQRankSum=3.464;QD=5.62;ReadPosRankSum=-0.584;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:11,15:26:21:179,21,0 chrXII 1062643 . T G 211.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.707;DP=34;Dels=0.00;FS=24.939;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=22.47;MQ0=5;MQRankSum=3.440;QD=6.21;ReadPosRankSum=-1.452;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:12,22:34:27:244,27,0 chrXII 1062650 . A G 204.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.828;DP=39;Dels=0.00;FS=32.750;HaplotypeScore=18.3174;MLEAC=2;MLEAF=1.00;MQ=21.39;MQ0=6;MQRankSum=1.933;QD=5.23;ReadPosRankSum=2.837;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:5,34:39:27:237,27,0 chrXII 1062942 . C T 97.20 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.636;DP=105;Dels=0.00;FS=2.616;HaplotypeScore=25.0241;MLEAC=1;MLEAF=0.500;MQ=13.10;MQ0=20;MQRankSum=2.027;QD=0.93;ReadPosRankSum=-2.384;SB=-4.204e+00 GT:AD:DP:GQ:PL 0/1:41,62:105:2:126,0,2 chrXII 1062945 . T C 120.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.406;DP=107;Dels=0.00;FS=2.487;HaplotypeScore=25.1110;MLEAC=2;MLEAF=1.00;MQ=14.32;MQ0=19;MQRankSum=6.933;QD=1.12;ReadPosRankSum=-5.897;SB=-3.621e+00 GT:AD:DP:GQ:PL 1/1:83,23:107:1:149,1,0 chrXII 1062951 . C T 120.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.494;DP=108;Dels=0.00;FS=2.504;HaplotypeScore=53.7756;MLEAC=2;MLEAF=1.00;MQ=14.62;MQ0=18;MQRankSum=7.121;QD=1.11;ReadPosRankSum=-3.216;SB=-4.120e+00 GT:AD:DP:GQ:PL 1/1:84,24:108:1:149,1,0 chrXII 1062954 . T C 144.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.734;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=31.1175;MLEAC=2;MLEAF=1.00;MQ=15.19;MQ0=18;MQRankSum=7.135;QD=1.30;ReadPosRankSum=-1.322;SB=-2.539e+00 GT:AD:DP:GQ:PL 1/1:79,26:111:4:175,4,0 chrXII 1062988 . A C 1117 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.066;DP=110;Dels=0.00;FS=37.698;HaplotypeScore=15.8622;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;MQRankSum=2.405;QD=10.15;ReadPosRankSum=2.405;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:1150,132,0 chrXII 1063020 . T G 1621.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050;DP=232;Dels=0.00;FS=3.224;HaplotypeScore=10.2103;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=2;MQRankSum=3.398;QD=6.99;ReadPosRankSum=1.926;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,120:232:99:1651,0,685 chrXII 1063024 . T C 836.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.629;DP=245;Dels=0.00;FS=3.385;HaplotypeScore=7.1933;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=2;MQRankSum=0.324;QD=3.41;ReadPosRankSum=0.160;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,112:245:99:866,0,1866 chrXII 1063029 . T C 901.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.114;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=7;MQRankSum=-3.599;QD=3.43;ReadPosRankSum=-0.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,130:263:99:931,0,1778 chrXII 1063095 . T G 816.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.104;DP=263;Dels=0.00;FS=11.033;HaplotypeScore=4.3130;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=61;MQRankSum=3.653;QD=3.10;ReadPosRankSum=-1.438;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,67:263:99:846,0,1252 chrXII 1063110 . T C 1845 filter AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=66;QD=8.20;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,223:225:99:1878,219,0 chrXII 1063161 . T C 525.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.633;DP=154;Dels=0.00;FS=27.460;HaplotypeScore=76.3359;MLEAC=1;MLEAF=0.500;MQ=17.94;MQ0=33;MQRankSum=8.102;QD=3.41;ReadPosRankSum=-6.706;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:109,45:154:99:555,0,99 chrXII 1063176 . C T 1074 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.209;DP=150;Dels=0.00;FS=12.943;HaplotypeScore=17.8091;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=24;MQRankSum=9.206;QD=7.16;ReadPosRankSum=1.623;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:79,71:150:80:1107,80,0 chrXII 1063194 . C T 1405 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.758;DP=155;Dels=0.00;FS=6.042;HaplotypeScore=22.1247;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=18;MQRankSum=7.360;QD=9.06;ReadPosRankSum=6.781;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:56,99:155:54:1438,54,0 chrXII 1063203 . T C 363.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.994;DP=184;Dels=0.00;FS=9.363;HaplotypeScore=12.7220;MLEAC=1;MLEAF=0.500;MQ=29.70;MQ0=11;MQRankSum=-0.261;QD=1.97;ReadPosRankSum=-7.851;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,50:184:99:393,0,1832 chrXII 1063217 . G C 1562.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.173;DP=262;Dels=0.00;FS=19.165;HaplotypeScore=3.5173;MLEAC=1;MLEAF=0.500;MQ=31.65;MQ0=5;MQRankSum=0.139;QD=5.96;ReadPosRankSum=-8.151;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,104:262:99:1592,0,2268 chrXII 1063218 . C T 1492.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.722;DP=274;Dels=0.00;FS=19.399;HaplotypeScore=3.3394;MLEAC=1;MLEAF=0.500;MQ=31.69;MQ0=5;MQRankSum=0.468;QD=5.45;ReadPosRankSum=-8.618;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,114:274:99:1522,0,2279 chrXII 1063294 . C T 4213.01 filter AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=28.2718;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=7;QD=16.59;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,247:254:99:4213,471,0 chrXII 1063308 . T C 2367 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=169;Dels=0.00;FS=16.872;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=13;MQRankSum=-0.522;QD=14.01;ReadPosRankSum=1.708;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,158:169:99:2400,273,0 chrXII 1063319 . A G 1673 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.937;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7235;MLEAC=2;MLEAF=1.00;MQ=23.27;MQ0=13;MQRankSum=-3.064;QD=14.30;ReadPosRankSum=4.937;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:9,108:117:99:1706,195,0 chrXII 1063404 . A G 676 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.03;MQ0=1;QD=17.33;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,37:39:81:709,81,0 chrXII 1063434 . A G 1158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;DP=59;Dels=0.00;FS=26.299;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=1;MQRankSum=2.301;QD=19.63;ReadPosRankSum=2.483;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:7,51:59:71:1191,71,0 chrXII 1063441 . T C 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.815;DP=64;Dels=0.00;FS=18.213;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=1;MQRankSum=3.079;QD=20.98;ReadPosRankSum=1.838;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:7,57:64:99:1376,117,0 chrXII 1063534 . A G 710.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;DP=86;Dels=0.00;FS=9.164;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=27.10;MQ0=1;MQRankSum=0.472;QD=8.26;ReadPosRankSum=1.363;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,39:86:99:740,0,741 chrXII 1063548 . C G 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=72;Dels=0.00;FS=17.592;HaplotypeScore=2.9681;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=0.693;QD=20.15;ReadPosRankSum=1.147;SB=-1.801e+01 GT:AD:DP:GQ:PL 1/1:6,65:72:75:1484,75,0 chrXII 1063572 . T C 787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.233;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=36.2695;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=0;MQRankSum=3.332;QD=14.31;ReadPosRankSum=3.495;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:12,43:55:93:820,93,0 chrXII 1063576 . C A 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;DP=57;Dels=0.02;FS=7.214;HaplotypeScore=38.8857;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=1;MQRankSum=3.188;QD=12.82;ReadPosRankSum=2.886;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:14,42:56:87:764,87,0 chrXII 1063659 . A T 673 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.257;DP=109;Dels=0.00;FS=29.226;HaplotypeScore=4.1021;MLEAC=2;MLEAF=1.00;MQ=19.11;MQ0=35;MQRankSum=1.535;QD=6.17;ReadPosRankSum=2.763;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:41,68:109:61:706,61,0 chrXII 1063670 . C T 888 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=34;QD=7.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,79:113:99:921,108,0 chrXII 1063684 . T C 883 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.98;MQ0=29;QD=8.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:916,102,0 chrXII 1063703 . A G 853 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=22;MQRankSum=-0.235;QD=8.28;ReadPosRankSum=1.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:886,102,0 chrXII 1063736 . T G 876 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=5;QD=11.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:909,102,0 chrXII 1063737 . G T 869 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=4;QD=11.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:902,102,0 chrXII 1063740 . A G 859 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.707;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8558;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=4;MQRankSum=1.876;QD=11.16;ReadPosRankSum=2.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,71:77:99:892,102,0 chrXII 1063745 . C T 859 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8625;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=2;MQRankSum=1.347;QD=11.45;ReadPosRankSum=0.866;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,71:75:99:892,102,0 chrXII 1063748 . A G 735 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8625;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=1;QD=11.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:87:768,87,0 chrXII 1063761 . C G 365 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=8.11;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:45:398,45,0 chrXII 1063779 . C T 154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;DP=35;Dels=0.00;FS=40.086;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=22.05;MQ0=3;MQRankSum=1.706;QD=4.40;ReadPosRankSum=0.198;SB=0.965 GT:AD:DP:GQ:PL 0/1:14,21:35:62:184,0,62 chrXII 1063785 . C T 190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=3;MQRankSum=2.131;QD=5.59;ReadPosRankSum=0.764;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:27:223,27,0 chrXII 1063800 . A G 196.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=44;Dels=0.00;FS=3.680;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=19.55;MQ0=8;MQRankSum=1.040;QD=4.45;ReadPosRankSum=1.634;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:27:229,27,0 chrXII 1063864 . G A 1561 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.160;DP=140;Dels=0.00;FS=20.334;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=32;MQRankSum=1.636;QD=11.15;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:11,129:140:99:1594,177,0 chrXII 1063872 . C T 1565 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.01;MQ0=30;QD=10.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1598,177,0 chrXII 1063926 . T C 277 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.618;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=39.8972;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=3;MQRankSum=-1.874;QD=5.43;ReadPosRankSum=2.215;SB=-5.880e-03 GT:AD:DP:GQ:PL 1/1:5,46:51:39:310,39,0 chrXII 1063928 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=39.8972;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=3;QD=1.02;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:2,48:50:9:83,9,0 chrXII 1063929 . A C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=39.8972;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=3;QD=0.94;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:3,46:49:9:78,9,0 chrXII 1063948 . C A 152.03 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.77;MQ0=1;QD=2.24;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,68:68:24:185,24,0 chrXII 1063955 . A T 156.03 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=15.83;MQ0=1;QD=1.88;SB=-2.704e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:24:189,24,0 chrXII 1063967 . T A 67.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1602;MLEAC=1;MLEAF=0.500;MQ=13.40;MQ0=3;MQRankSum=7.256;QD=0.54;ReadPosRankSum=4.006;SB=-8.352e-02 GT:AD:DP:GQ:PL 0/1:97,27:124:10:97,0,10 chrXII 1063968 . T C 65.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1602;MLEAC=1;MLEAF=0.500;MQ=13.40;MQ0=3;MQRankSum=7.268;QD=0.53;ReadPosRankSum=3.520;SB=-1.109e-01 GT:AD:DP:GQ:PL 0/1:97,27:124:10:95,0,10 chrXII 1063969 . C T 66.34 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DP=127;Dels=0.00;FS=29.163;HaplotypeScore=6.1602;MLEAC=1;MLEAF=0.500;MQ=13.26;MQ0=5;MQRankSum=1.025;QD=0.52;ReadPosRankSum=-0.942;SB=-3.348e+00 GT:AD:DP:GQ:PL 0/1:5,122:127:8:96,0,8 chrXII 1063977 . G A 204.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=154;Dels=0.00;FS=71.746;HaplotypeScore=11.3364;MLEAC=1;MLEAF=0.500;MQ=16.19;MQ0=5;MQRankSum=5.299;QD=1.32;ReadPosRankSum=-1.977;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:117,37:154:99:234,0,191 chrXII 1063978 . T G 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.365;DP=161;Dels=0.00;FS=79.799;HaplotypeScore=11.3364;MLEAC=1;MLEAF=0.500;MQ=16.89;MQ0=5;MQRankSum=4.671;QD=1.13;ReadPosRankSum=-2.025;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:123,38:161:99:212,0,319 chrXII 1063985 . G A 261.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.325;DP=189;Dels=0.00;FS=95.274;HaplotypeScore=9.4894;MLEAC=1;MLEAF=0.500;MQ=17.79;MQ0=6;MQRankSum=4.631;QD=1.38;ReadPosRankSum=-6.208;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:132,57:189:99:291,0,510 chrXII 1064056 . G A 440.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.962;DP=360;Dels=0.00;FS=232.387;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=7;MQRankSum=-1.864;QD=1.22;ReadPosRankSum=-3.933;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:258,102:360:99:470,0,4665 chrXII 1064068 . G A 5962.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.995;DP=321;Dels=0.00;FS=5.220;HaplotypeScore=10.3349;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=4;MQRankSum=2.254;QD=18.57;ReadPosRankSum=2.770;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:6,315:321:99:5962,625,0 chrXII 1064069 . G A 4543.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;DP=318;Dels=0.00;FS=167.549;HaplotypeScore=10.3349;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=4;MQRankSum=1.067;QD=14.29;ReadPosRankSum=9.695;SB=-2.164e+03 GT:AD:DP:GQ:PL 0/1:75,243:318:80:4543,0,80 chrXII 1064078 . T G 5404.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.803;DP=271;Dels=0.00;FS=7.951;HaplotypeScore=12.2284;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=5;MQRankSum=0.047;QD=19.94;ReadPosRankSum=3.826;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:5,266:271:99:5404,632,0 chrXII 1064124 . A T 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;DP=158;Dels=0.00;FS=7.374;HaplotypeScore=18.1026;MLEAC=2;MLEAF=1.00;MQ=20.88;MQ0=2;MQRankSum=1.695;QD=15.29;ReadPosRankSum=-2.219;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:9,149:158:99:2449,229,0 chrXII 1064133 . G A 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DP=108;Dels=0.00;FS=9.985;HaplotypeScore=4.7603;MLEAC=2;MLEAF=1.00;MQ=17.27;MQ0=3;MQRankSum=1.043;QD=9.84;ReadPosRankSum=0.551;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:10,98:108:53:1096,53,0 chrXII 1064145 . G A 857.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.263;DP=137;Dels=0.00;FS=14.251;HaplotypeScore=14.4742;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=4;MQRankSum=0.079;QD=6.26;ReadPosRankSum=7.929;SB=-3.590e+02 GT:AD:DP:GQ:PL 0/1:62,75:137:99:887,0,320 chrXII 1064156 . A G 2249 filter AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=4;QD=11.90;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:2282,287,0 chrXII 1064224 . C T 560.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.633;DP=441;Dels=0.00;FS=227.111;HaplotypeScore=16.6865;MLEAC=1;MLEAF=0.500;MQ=25.42;MQ0=1;MQRankSum=-0.066;QD=1.27;ReadPosRankSum=-3.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:350,91:441:99:590,0,5603 chrXII 1064257 . T C 1176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.535;DP=366;Dels=0.00;FS=319.204;HaplotypeScore=29.9588;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=1;MQRankSum=0.474;QD=3.21;ReadPosRankSum=4.391;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,134:366:99:1206,0,4117 chrXII 1064268 . T C 5321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.334;DP=285;Dels=0.00;FS=2.801;HaplotypeScore=13.5059;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=0;MQRankSum=1.539;QD=18.67;ReadPosRankSum=0.308;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:2,281:285:99:5321,599,0 chrXII 1064276 . C T 1451.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.210;DP=251;Dels=0.00;FS=315.890;HaplotypeScore=12.3457;MLEAC=1;MLEAF=0.500;MQ=25.36;MQ0=0;MQRankSum=0.179;QD=5.78;ReadPosRankSum=1.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,122:251:99:1481,0,1921 chrXII 1064281 . T C 1511.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.983;DP=235;Dels=0.00;FS=295.517;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=0;MQRankSum=1.366;QD=6.43;ReadPosRankSum=1.030;SB=-6.502e+01 GT:AD:DP:GQ:PL 0/1:128,104:235:99:1541,0,1527 chrXII 1064285 . T A 1440.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;DP=211;Dels=0.00;FS=250.385;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=24.29;MQ0=0;MQRankSum=3.482;QD=6.82;ReadPosRankSum=-1.937;SB=-6.086e-03 GT:AD:DP:GQ:PL 0/1:95,116:211:99:1470,0,1368 chrXII 1064286 . A G 1429.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.265;DP=208;Dels=0.00;FS=246.390;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=24.21;MQ0=0;MQRankSum=2.469;QD=6.87;ReadPosRankSum=-2.482;SB=0.028 GT:AD:DP:GQ:PL 0/1:91,117:208:99:1459,0,1165 chrXII 1064292 . T A 1839 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=0;MQRankSum=1.299;QD=13.52;ReadPosRankSum=1.656;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:1872,233,0 chrXII 1064294 . G T 263.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.684;DP=135;Dels=0.00;FS=89.229;HaplotypeScore=6.5300;MLEAC=1;MLEAF=0.500;MQ=21.42;MQ0=0;MQRankSum=1.624;QD=1.95;ReadPosRankSum=5.798;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,50:135:99:293,0,1084 chrXII 1064296 . A C 245.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.857;DP=134;Dels=0.00;FS=84.495;HaplotypeScore=6.5300;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=0;MQRankSum=2.109;QD=1.83;ReadPosRankSum=6.245;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,50:134:99:275,0,1000 chrXII 1064297 . T G 257.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.845;DP=134;Dels=0.00;FS=84.495;HaplotypeScore=5.5406;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=0;MQRankSum=2.017;QD=1.92;ReadPosRankSum=6.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,50:134:99:287,0,1106 chrXII 1064300 . T A 277.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;DP=134;Dels=0.00;FS=76.647;HaplotypeScore=11.8642;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=0;MQRankSum=1.963;QD=2.07;ReadPosRankSum=6.082;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,50:134:99:307,0,1009 chrXII 1064301 . T A 284.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.267;DP=135;Dels=0.00;FS=79.506;HaplotypeScore=11.8642;MLEAC=1;MLEAF=0.500;MQ=20.87;MQ0=0;MQRankSum=2.394;QD=2.10;ReadPosRankSum=6.122;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,50:135:99:314,0,983 chrXII 1064308 . G A 313.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.525;DP=160;Dels=0.00;FS=30.913;HaplotypeScore=34.1143;MLEAC=1;MLEAF=0.500;MQ=19.58;MQ0=0;MQRankSum=2.575;QD=1.96;ReadPosRankSum=0.895;SB=-4.000e+01 GT:AD:DP:GQ:PL 0/1:74,86:160:99:343,0,565 chrXII 1064309 . A G 368.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;DP=161;Dels=0.00;FS=33.759;HaplotypeScore=34.7794;MLEAC=1;MLEAF=0.500;MQ=19.65;MQ0=0;MQRankSum=2.757;QD=2.29;ReadPosRankSum=0.631;SB=-5.002e+01 GT:AD:DP:GQ:PL 0/1:68,93:161:99:398,0,538 chrXII 1064313 . G C 339.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;DP=151;Dels=0.00;FS=47.461;HaplotypeScore=181.2274;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=1;MQRankSum=-3.344;QD=2.25;ReadPosRankSum=2.488;SB=-6.588e-03 GT:AD:DP:GQ:PL 0/1:105,46:151:45:369,0,45 chrXII 1064314 . A G 277.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.584;DP=150;Dels=0.00;FS=40.041;HaplotypeScore=181.2274;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=1;MQRankSum=-3.501;QD=1.85;ReadPosRankSum=3.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,43:150:82:307,0,82 chrXII 1064339 . A G,T 745.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.761;DP=165;Dels=0.00;FS=4.853;HaplotypeScore=21.5343;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.88;MQ0=2;MQRankSum=1.075;QD=4.52;ReadPosRankSum=-0.577;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/2:15,95,55:165:99:805,448,505,264,0,304 chrXII 1064344 . T G 666.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.679;DP=173;Dels=0.00;FS=50.596;HaplotypeScore=49.4306;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=2;MQRankSum=3.533;QD=3.85;ReadPosRankSum=-4.818;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:107,66:173:99:696,0,356 chrXII 1064345 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DP=178;Dels=0.00;FS=45.453;HaplotypeScore=51.3838;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=2;MQRankSum=-1.307;QD=0.28;ReadPosRankSum=3.555;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:106,72:178:79:79,0,957 chrXII 1064363 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.7855;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=1;QD=11.43;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:2583,276,0 chrXII 1064375 . T A 3135 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.8086;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=1;QD=13.81;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:3168,348,0 chrXII 1064381 . T G 2451.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;DP=224;Dels=0.00;FS=282.683;HaplotypeScore=20.2506;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=1;MQRankSum=5.367;QD=10.94;ReadPosRankSum=2.520;SB=-2.702e+01 GT:AD:DP:GQ:PL 0/1:74,150:224:51:2481,0,51 chrXII 1064389 . T A 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.672;DP=227;Dels=0.00;FS=200.061;HaplotypeScore=28.7982;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=1;MQRankSum=3.902;QD=12.52;ReadPosRankSum=4.161;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:52,175:227:55:2876,55,0 chrXII 1064396 . T C 2355.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.147;DP=209;Dels=0.00;FS=356.177;HaplotypeScore=38.0581;MLEAC=1;MLEAF=0.500;MQ=27.89;MQ0=1;MQRankSum=3.158;QD=11.27;ReadPosRankSum=5.898;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:56,153:209:44:2385,0,44 chrXII 1064401 . C T 3008 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.215;DP=191;Dels=0.00;FS=34.166;HaplotypeScore=33.3094;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=1;MQRankSum=1.406;QD=15.75;ReadPosRankSum=1.325;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:6,171:191:99:3041,284,0 chrXII 1064405 . A G 2312.14 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.559;DP=185;Dels=0.00;FS=295.767;HaplotypeScore=33.3094;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=2.759;QD=12.50;ReadPosRankSum=5.182;SB=-6.152e+00 GT:AD:DP:GQ:PL 0/1:39,146:185:12:2342,0,12 chrXII 1064407 . T A 2325 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;DP=179;Dels=0.00;FS=178.891;HaplotypeScore=29.3761;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;MQRankSum=0.705;QD=12.99;ReadPosRankSum=5.125;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:25,154:179:60:2358,60,0 chrXII 1064408 . A G 2725 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=23.4301;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=-1.732;QD=15.84;ReadPosRankSum=1.712;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,171:172:99:2758,335,0 chrXII 1064409 . A G 2832 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.030;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=21.6498;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-0.658;QD=16.56;ReadPosRankSum=-0.841;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2865,309,0 chrXII 1064420 . G A 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.899;DP=186;Dels=0.00;FS=103.307;HaplotypeScore=5.1848;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;MQRankSum=2.780;QD=15.52;ReadPosRankSum=-0.929;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:12,174:186:99:2919,284,0 chrXII 1064428 . A T 2603 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.851;DP=172;Dels=0.00;FS=6.858;HaplotypeScore=7.1614;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;MQRankSum=0.631;QD=15.13;ReadPosRankSum=2.606;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:4,158:172:99:2636,272,0 chrXII 1064432 . T G 2482 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.348;DP=159;Dels=0.00;FS=20.778;HaplotypeScore=5.7785;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=1.847;QD=15.61;ReadPosRankSum=1.476;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2515,285,0 chrXII 1064435 . T A 2409 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7852;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=15.64;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2442,276,0 chrXII 1064445 . C T 1536 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;QD=14.22;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1569,180,0 chrXII 1064447 . A G 1425 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=0.426;QD=13.19;ReadPosRankSum=2.404;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1458,168,0 chrXII 1064452 . A G 1343 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=1;MQRankSum=-0.480;QD=13.30;ReadPosRankSum=2.401;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1376,165,0 chrXII 1064454 . T C 1279 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=6.877;DP=120;Dels=0.00;FS=175.921;HaplotypeScore=7.7990;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=3;MQRankSum=1.593;QD=10.66;ReadPosRankSum=6.877;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:19,101:120:99:1312,165,0 chrXII 1064514 . A G 4836.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=370;Dels=0.00;FS=6.297;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=21.70;MQ0=16;MQRankSum=1.722;QD=13.07;ReadPosRankSum=1.641;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,356:370:99:4836,566,0 chrXII 1064545 . A G 5715.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=498;Dels=0.00;FS=17.535;HaplotypeScore=13.1228;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=17;MQRankSum=2.414;QD=11.48;ReadPosRankSum=1.656;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:44,451:498:61:5715,61,0 chrXII 1064565 . C T 5843.01 filter AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=8.6075;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=13;QD=16.89;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,342:346:99:5843,651,0 chrXII 1064643 . T C 473 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=0;QD=16.31;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:60:506,60,0 chrXII 1064657 . T C 185.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.722;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=10.2144;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=0;MQRankSum=0.225;QD=5.14;ReadPosRankSum=1.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,21:36:99:215,0,169 chrXII 1064659 . A T 477 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=12.1036;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=0;MQRankSum=-0.963;QD=13.25;ReadPosRankSum=1.636;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:60:510,60,0 chrXII 1064660 . C A,G 367.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.386;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.53;MQ0=0;MQRankSum=0.959;QD=10.49;ReadPosRankSum=-0.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:2,20,13:35:99:427,158,143,254,0,248 chrXII 1064662 . T A,C 358.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.604;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.53;MQ0=0;MQRankSum=1.030;QD=10.23;ReadPosRankSum=-0.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:2,20,13:35:99:418,157,142,246,0,240 chrXII 1064679 . A G 1035 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.089;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=34.4226;MLEAC=2;MLEAF=1.00;MQ=23.30;MQ0=0;MQRankSum=1.774;QD=8.62;ReadPosRankSum=3.318;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,111:120:99:1068,107,0 chrXII 1064685 . G C 405.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=30.6578;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=0;MQRankSum=1.336;QD=3.07;ReadPosRankSum=2.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,64:132:99:435,0,506 chrXII 1064687 . G A 1164 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.842;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=28.7686;MLEAC=2;MLEAF=1.00;MQ=23.30;MQ0=0;MQRankSum=1.833;QD=8.82;ReadPosRankSum=2.988;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,123:132:99:1197,119,0 chrXII 1064693 . A T 1307 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=107.1638;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=8.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1340,150,0 chrXII 1064697 . G A 420.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.310;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=180.0544;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=0;MQRankSum=1.440;QD=2.09;ReadPosRankSum=6.197;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,78:201:99:450,0,656 chrXII 1064703 . A G 1173 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.452;DP=224;Dels=0.04;FS=0.000;HaplotypeScore=379.4461;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=1;MQRankSum=0.075;QD=5.24;ReadPosRankSum=-4.496;SB=3.00 GT:AD:DP:GQ:PL 1/1:39,177:216:99:1206,121,0 chrXII 1064711 . G A 692.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.850;DP=243;Dels=0.03;FS=0.000;HaplotypeScore=221.2891;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=1;MQRankSum=2.468;QD=2.85;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,206:235:99:722,0,237 chrXII 1064716 . A G 1218 filter AC=2;AF=1.00;AN=2;DP=254;Dels=0.03;FS=0.000;HaplotypeScore=167.3477;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=3;QD=4.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:1251,147,0 chrXII 1064727 . A G 238.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.359;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=81.3995;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=3;MQRankSum=-0.892;QD=0.88;ReadPosRankSum=-2.774;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:237,34:271:99:268,0,937 chrXII 1064729 . A G 909.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.911;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=83.1895;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=3;MQRankSum=1.474;QD=3.37;ReadPosRankSum=3.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,235:270:99:939,0,245 chrXII 1064738 . G A 1560 filter AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=63.8406;MLEAC=2;MLEAF=1.00;MQ=23.30;MQ0=3;QD=5.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:1593,183,0 chrXII 1064756 . A G 1056 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.272;DP=224;Dels=0.00;FS=9.235;HaplotypeScore=9.0356;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=5;MQRankSum=1.098;QD=4.71;ReadPosRankSum=3.785;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:27,197:224:72:1089,72,0 chrXII 1064787 . T C 328.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DP=138;Dels=0.00;FS=3.724;HaplotypeScore=46.7200;MLEAC=1;MLEAF=0.500;MQ=21.80;MQ0=5;MQRankSum=-3.552;QD=2.38;ReadPosRankSum=2.825;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,78:138:99:358,0,390 chrXII 1064788 . G A 544.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.779;DP=129;Dels=0.00;FS=6.749;HaplotypeScore=48.6513;MLEAC=1;MLEAF=0.500;MQ=21.73;MQ0=5;MQRankSum=-1.403;QD=4.22;ReadPosRankSum=0.802;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,99:129:99:574,0,157 chrXII 1064792 . A G 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=46.5324;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=3;MQRankSum=2.965;QD=0.47;ReadPosRankSum=-0.864;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,19:121:87:87,0,579 chrXII 1064797 . T C,G 545.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8995;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.76;MQ0=3;QD=6.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,55,32:87:99:605,324,288,280,0,238 chrXII 1064799 . G C 260.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=16.5288;MLEAC=1;MLEAF=0.500;MQ=20.76;MQ0=3;MQRankSum=3.652;QD=2.99;ReadPosRankSum=-1.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,32:87:99:290,0,236 chrXII 1064804 . G T 628 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8307;MLEAC=2;MLEAF=1.00;MQ=21.46;MQ0=0;QD=8.60;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:75:661,75,0 chrXII 1064805 . A G 625 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8307;MLEAC=2;MLEAF=1.00;MQ=21.46;MQ0=0;QD=8.56;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:75:658,75,0 chrXII 1064820 . G A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=15.5650;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=1;MQRankSum=2.098;QD=0.39;ReadPosRankSum=0.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,5:64:55:55,0,125 chrXII 1064835 . G A,C 197.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9663;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.91;MQ0=1;QD=4.81;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/2:0,17,24:41:67:257,167,155,91,0,67 chrXII 1064837 . C T 247 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=8.8077;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=1;QD=6.02;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:33:280,33,0 chrXII 1064879 . A G 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.876;DP=142;Dels=0.00;FS=115.640;HaplotypeScore=257.5098;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=3;MQRankSum=3.626;QD=0.99;ReadPosRankSum=2.487;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,47:142:99:170,0,552 chrXII 1064880 . C T 145.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.909;DP=142;Dels=0.04;FS=127.207;HaplotypeScore=246.9867;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=3;MQRankSum=4.168;QD=1.02;ReadPosRankSum=2.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,47:136:99:175,0,483 chrXII 1064882 . G A 135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;DP=143;Dels=0.04;FS=128.048;HaplotypeScore=216.8192;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=3;MQRankSum=3.119;QD=0.94;ReadPosRankSum=3.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,47:137:99:165,0,572 chrXII 1064897 . G T 904 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=146;Dels=0.02;FS=0.000;HaplotypeScore=112.0780;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=4;MQRankSum=1.456;QD=6.19;ReadPosRankSum=0.778;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:937,105,0 chrXII 1064908 . G A 817 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.390;DP=158;Dels=0.00;FS=9.929;HaplotypeScore=63.0255;MLEAC=2;MLEAF=1.00;MQ=24.31;MQ0=18;MQRankSum=3.193;QD=5.17;ReadPosRankSum=2.451;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:8,150:158:99:850,102,0 chrXII 1064914 . G C 420.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.880;DP=186;Dels=0.00;FS=158.423;HaplotypeScore=142.9105;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=18;MQRankSum=-1.869;QD=2.26;ReadPosRankSum=-1.837;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:113,73:186:99:450,0,170 chrXII 1064917 . A G 767 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=103.9464;MLEAC=2;MLEAF=1.00;MQ=21.91;MQ0=18;MQRankSum=0.596;QD=4.38;ReadPosRankSum=2.679;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:4,171:175:90:800,90,0 chrXII 1064932 . A G 280 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.531;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=71.0301;MLEAC=2;MLEAF=1.00;MQ=18.10;MQ0=19;MQRankSum=2.907;QD=1.50;ReadPosRankSum=-0.443;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:22,165:187:36:313,36,0 chrXII 1064935 . T G 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.612;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=77.7618;MLEAC=1;MLEAF=0.500;MQ=17.43;MQ0=19;MQRankSum=4.274;QD=0.63;ReadPosRankSum=1.821;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,43:190:75:150,0,75 chrXII 1064936 . G A 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.518;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=86.4735;MLEAC=1;MLEAF=0.500;MQ=17.44;MQ0=19;MQRankSum=3.915;QD=0.66;ReadPosRankSum=1.397;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,43:190:74:157,0,74 chrXII 1064941 . A G 130.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.334;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=26.9215;MLEAC=2;MLEAF=1.00;MQ=16.99;MQ0=19;MQRankSum=-0.563;QD=0.70;ReadPosRankSum=1.043;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,184:185:18:163,18,0 chrXII 1064959 . G A 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.345;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=238.9336;MLEAC=1;MLEAF=0.500;MQ=15.76;MQ0=18;MQRankSum=1.643;QD=0.21;ReadPosRankSum=8.197;SB=-7.384e-03 GT:AD:DP:GQ:PL 0/1:203,103:306:34:93,0,34 chrXII 1064984 . G C 94.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.848;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=3.5982;MLEAC=2;MLEAF=1.00;MQ=15.48;MQ0=17;MQRankSum=2.935;QD=0.34;ReadPosRankSum=-3.298;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:66,208:274:15:127,15,0 chrXII 1064990 . C G 111.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=260;Dels=0.00;FS=3.613;HaplotypeScore=11.3604;MLEAC=2;MLEAF=1.00;MQ=15.71;MQ0=10;MQRankSum=2.452;QD=0.43;ReadPosRankSum=-4.299;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:63,197:260:15:144,15,0 chrXII 1064997 . A G 99.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=202;Dels=0.00;FS=20.000;HaplotypeScore=13.3072;MLEAC=2;MLEAF=1.00;MQ=16.24;MQ0=2;MQRankSum=-1.143;QD=0.49;ReadPosRankSum=0.572;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,201:202:15:132,15,0 chrXII 1064998 . T A 104.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.512;DP=202;Dels=0.00;FS=18.513;HaplotypeScore=13.3072;MLEAC=2;MLEAF=1.00;MQ=16.24;MQ0=2;MQRankSum=-0.927;QD=0.52;ReadPosRankSum=0.220;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,142:202:15:137,15,0 chrXII 1065289 . G A 2263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.855;DP=690;Dels=0.00;FS=54.647;HaplotypeScore=33.5292;MLEAC=1;MLEAF=0.500;MQ=18.74;MQ0=5;MQRankSum=11.753;QD=3.28;ReadPosRankSum=-0.029;SB=-8.950e+02 GT:AD:DP:GQ:PL 0/1:520,170:690:99:2293,0,3503 chrXII 1065396 . G A 688 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=0;QD=17.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:81:721,81,0 chrXII 1065403 . T G 663 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=0;QD=15.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:81:696,81,0 chrXII 1065450 . C T 1593 filter AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=12.78;MQ0=226;QD=5.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:1626,180,0 chrXII 1065661 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.396;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=6.88;MQ0=63;MQRankSum=-2.430;QD=0.14;ReadPosRankSum=2.094;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:19,106:125:6:49,6,0 chrXII 1065860 . A G 417 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.830;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=13.92;MQ0=2;MQRankSum=0.316;QD=7.32;ReadPosRankSum=4.899;SB=-6.532e-03 GT:AD:DP:GQ:PL 1/1:10,47:57:57:450,57,0 chrXIII 8262 . A G 97.26 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=5;QD=6.95;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:15:130,15,0 chrXIII 8279 . G C 179.03 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=7;QD=8.95;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:212,24,0 chrXIII 8317 . G A 428 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.06;MQ0=17;QD=10.70;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:54:461,54,0 chrXIII 8385 . G A 631 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=15;QD=12.62;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:72:664,72,0 chrXIII 8415 . T G 433 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=4;QD=10.31;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:54:466,54,0 chrXIII 8429 . C G 342 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=9.77;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:42:375,42,0 chrXIII 8431 . G T 334 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=26.7738;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=9.82;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:42:367,42,0 chrXIII 8449 . A G 399 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=10.78;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:48:432,48,0 chrXIII 8450 . C T 418 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;QD=11.00;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:48:451,48,0 chrXIII 8461 . A T 629 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=12.58;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:75:662,75,0 chrXIII 8537 . A G 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=97;Dels=0.00;FS=4.960;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=1.327;QD=18.28;ReadPosRankSum=1.695;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,93:97:99:1806,207,0 chrXIII 8543 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.80;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1875,216,0 chrXIII 8656 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=22.44;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1873,201,0 chrXIII 8679 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=21.08;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1698,195,0 chrXIII 8687 . A G 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=0.266;QD=20.70;ReadPosRankSum=1.688;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1689,195,0 chrXIII 8859 . A G 1934 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=21.49;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1967,222,0 chrXIII 8872 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=73.3602;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=21.89;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1850,207,0 chrXIII 8939 . A G 1467 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;MQRankSum=1.386;QD=16.30;ReadPosRankSum=1.694;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1500,174,0 chrXIII 8946 . G A 1391 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=14.96;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1424,162,0 chrXIII 8949 . A G 1328 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=2.945;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.29;MQ0=0;MQRankSum=-0.129;QD=15.44;ReadPosRankSum=2.393;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1361,156,0 chrXIII 8968 . A T 1409 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=16.01;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1442,156,0 chrXIII 8973 . G T 1357 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=15.96;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1390,153,0 chrXIII 9141 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.1511;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=19.28;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1132,129,0 chrXIII 9200 . A G 1383 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=13.5482;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.28;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1416,162,0 chrXIII 9278 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=22.14;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1428,159,0 chrXIII 9319 . C G 1810 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=24.13;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1843,207,0 chrXIII 9360 . A G 1670 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=24.56;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1703,192,0 chrXIII 9517 . A G 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-0.604;QD=18.26;ReadPosRankSum=1.692;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1603,183,0 chrXIII 9525 . A C 1540 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=115.9810;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=18.55;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1573,177,0 chrXIII 9630 . C T 1406 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.05;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1439,162,0 chrXIII 9709 . T C 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=0.165;QD=22.32;ReadPosRankSum=1.691;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1930,222,0 chrXIII 9730 . T C 1659 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=21.00;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1692,195,0 chrXIII 9746 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=18.77;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1478,159,0 chrXIII 9755 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=18.13;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1465,162,0 chrXIII 9829 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.27;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2127,243,0 chrXIII 9880 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.93;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1919,210,0 chrXIII 9896 . C T 1795 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=17.95;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1828,201,0 chrXIII 9944 . T C 1906 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.65;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1939,219,0 chrXIII 10120 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.89;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2826,321,0 chrXIII 10131 . T A 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=124;Dels=0.00;FS=3.017;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.426;QD=22.76;ReadPosRankSum=2.370;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2855,306,0 chrXIII 10184 . G T 2658 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.26;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2691,306,0 chrXIII 10239 . T C 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=3.416;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.083;QD=21.67;ReadPosRankSum=1.639;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2482,276,0 chrXIII 10479 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.402;QD=21.12;ReadPosRankSum=1.701;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2398,273,0 chrXIII 10737 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.38;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3259,363,0 chrXIII 10868 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.68;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2868,312,0 chrXIII 10941 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.044;QD=23.64;ReadPosRankSum=1.710;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3758,432,0 chrXIII 11305 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.31;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1674,189,0 chrXIII 11319 . T A 1356 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.08;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1389,156,0 chrXIII 11831 . T C 3048 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2393;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.25;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3081,348,0 chrXIII 11972 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2846,312,0 chrXIII 12086 . A T 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.188;QD=21.72;ReadPosRankSum=1.683;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3095,351,0 chrXIII 12215 . T C 2201 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2234,246,0 chrXIII 12311 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.76;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3730,426,0 chrXIII 12440 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4133;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.73;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3281,363,0 chrXIII 12902 . T G 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=216;Dels=0.00;FS=5.019;HaplotypeScore=20.2065;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.604;QD=19.55;ReadPosRankSum=1.668;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4222,477,0 chrXIII 13242 . T G 4317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=4.422;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.172;QD=22.60;ReadPosRankSum=1.714;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4317,501,0 chrXIII 13364 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.7761;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.19;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3386,372,0 chrXIII 13505 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=150;Dels=0.00;FS=12.344;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.136;QD=23.09;ReadPosRankSum=2.857;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:3,145:150:99:3464,399,0 chrXIII 13572 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=2.970;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.726;QD=22.51;ReadPosRankSum=2.406;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3872,438,0 chrXIII 13792 . T C 3133 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.58;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3166,360,0 chrXIII 13828 . G C 2563 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=16.64;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2596,306,0 chrXIII 13831 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=16.99;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2598,300,0 chrXIII 13907 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.76;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3116,336,0 chrXIII 13915 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.71;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3186,354,0 chrXIII 13954 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7387;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=19.33;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2836,306,0 chrXIII 13964 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.401;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-0.654;QD=17.89;ReadPosRankSum=1.709;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2752,324,0 chrXIII 14063 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.24;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3209,354,0 chrXIII 14341 . G C 2617 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.18;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2650,303,0 chrXIII 14377 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.85;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1839,210,0 chrXIII 14478 . G C 2574 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.78;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2607,297,0 chrXIII 14562 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.4764;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.97;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3263,375,0 chrXIII 14580 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=13.643;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-0.073;QD=19.80;ReadPosRankSum=2.417;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3043,336,0 chrXIII 14592 . A T 2965 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=19.25;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2998,339,0 chrXIII 14599 . T C 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.055;QD=17.06;ReadPosRankSum=1.710;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2712,306,0 chrXIII 14664 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.3506;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.88;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4114,456,0 chrXIII 14705 . G A 4964.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=23.87;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4964,540,0 chrXIII 14781 . C A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.83;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3978,444,0 chrXIII 14857 . C T 4054.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=21.11;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4054,447,0 chrXIII 14913 . A G 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.542;DP=176;Dels=0.00;FS=11.070;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=-2.752;QD=0.22;ReadPosRankSum=-4.485;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:168,8:176:9:71,9,0 chrXIII 14933 . C A 2770 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.34;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2803,306,0 chrXIII 14934 . G T 2462 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.30;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2495,279,0 chrXIII 15055 . A T 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=178;Dels=0.00;FS=3.109;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.525;QD=23.24;ReadPosRankSum=1.635;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4137,456,0 chrXIII 15133 . C A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0358;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=24.05;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4064,462,0 chrXIII 15357 . A G 3868.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3868,435,0 chrXIII 15470 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.33;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3283,360,0 chrXIII 15705 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3011,339,0 chrXIII 16224 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.89;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4098,468,0 chrXIII 16287 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.91;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4392,486,0 chrXIII 16314 . C T 4592.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.97;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4592,519,0 chrXIII 16338 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.3000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.49;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4282,492,0 chrXIII 16406 . G A 5091.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=18.0986;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.33;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5091,564,0 chrXIII 16498 . G T 4832.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.1281;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.41;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:4832,525,0 chrXIII 16521 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=18.50;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:3960,462,0 chrXIII 16764 . G A 4451.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.8668;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.80;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4451,483,0 chrXIII 17138 . T A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=16.04;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:3592,399,0 chrXIII 17364 . T C 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=179;Dels=0.00;FS=3.030;HaplotypeScore=11.0624;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.138;QD=21.41;ReadPosRankSum=2.422;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,174:179:99:3832,438,0 chrXIII 17459 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=187;Dels=0.00;FS=3.932;HaplotypeScore=8.2142;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.391;QD=18.83;ReadPosRankSum=-0.104;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,182:187:99:3522,402,0 chrXIII 17462 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.8985;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.875;QD=18.56;ReadPosRankSum=1.695;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3471,387,0 chrXIII 17648 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=206;Dels=0.00;FS=6.077;HaplotypeScore=19.4586;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.476;QD=22.63;ReadPosRankSum=2.966;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:3,202:206:99:4662,525,0 chrXIII 17708 . T C 5634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.2320;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.917;QD=23.57;ReadPosRankSum=1.718;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5634,648,0 chrXIII 17810 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.35;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4023,441,0 chrXIII 17843 . T A 4097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=179;Dels=0.00;FS=7.247;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.199;QD=22.89;ReadPosRankSum=2.422;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4097,453,0 chrXIII 17913 . T C 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=201;Dels=0.00;FS=8.792;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.344;QD=21.81;ReadPosRankSum=2.425;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4383,501,0 chrXIII 17955 . T G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.16;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3619,414,0 chrXIII 18080 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3062,336,0 chrXIII 18437 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=8.144;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.213;QD=19.55;ReadPosRankSum=2.323;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3083,357,0 chrXIII 18542 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.05;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3060,339,0 chrXIII 18546 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.21;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3065,330,0 chrXIII 18729 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=16.20;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1410,153,0 chrXIII 20392 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.886;QD=21.43;ReadPosRankSum=1.706;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,130:134:99:2904,336,0 chrXIII 20497 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3268,366,0 chrXIII 20622 . C G 2388 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2421,279,0 chrXIII 21082 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2575;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=20.12;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3702,426,0 chrXIII 21100 . G T 3026 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=19.52;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3059,354,0 chrXIII 21105 . T C 2741 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=19.72;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2774,315,0 chrXIII 21121 . T C 2043 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=18.24;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2076,240,0 chrXIII 21124 . G A 1968 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=18.06;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2001,222,0 chrXIII 21130 . C T 1850 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1883,210,0 chrXIII 21139 . A G 1589 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;MQRankSum=0.020;QD=15.89;ReadPosRankSum=2.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,97:100:99:1622,183,0 chrXIII 21154 . G A 1567 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=14.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1600,177,0 chrXIII 21157 . A G 1462 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;MQRankSum=0.996;QD=13.92;ReadPosRankSum=2.403;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1495,174,0 chrXIII 21175 . A G 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;MQRankSum=-0.065;QD=13.10;ReadPosRankSum=2.925;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1264,144,0 chrXIII 21211 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=17.05;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1653,183,0 chrXIII 21229 . A G 1706 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;MQRankSum=-1.732;QD=18.54;ReadPosRankSum=1.694;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1739,195,0 chrXIII 21231 . A G 1638 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;MQRankSum=-1.656;QD=18.00;ReadPosRankSum=1.694;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1671,192,0 chrXIII 21241 . A G 1430 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;MQRankSum=0.391;QD=16.82;ReadPosRankSum=2.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1463,165,0 chrXIII 21244 . G A 1482 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=18.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1515,168,0 chrXIII 21253 . G A 1327 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=17.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1360,153,0 chrXIII 21269 . A G 1034 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=-1.149;QD=18.14;ReadPosRankSum=2.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1067,126,0 chrXIII 21274 . T A 967 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=19.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1000,114,0 chrXIII 21280 . C T 727 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=15.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:93:760,93,0 chrXIII 21292 . C T 502 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=14.76;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:63:535,63,0 chrXIII 21295 . G A 445 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=14.83;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:478,57,0 chrXIII 21298 . T C 299 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=11.07;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:39:332,39,0 chrXIII 21301 . A G 282 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;MQRankSum=-1.841;QD=10.44;ReadPosRankSum=2.965;SB=9.683e-03 GT:AD:DP:GQ:PL 1/1:5,22:27:39:315,39,0 chrXIII 21307 . T C 166.03 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=10.38;SB=-6.804e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:24:199,24,0 chrXIII 21309 . G A 189.01 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=11.81;SB=-9.302e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:27:222,27,0 chrXIII 21319 . G A 98.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.19;SB=-1.201e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:15:131,15,0 chrXIII 21328 . A G 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=3.43;SB=-1.005e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:12:101,12,0 chrXIII 21331 . G A 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=3.17;SB=-4.952e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:12:99,12,0 chrXIII 21334 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.531;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=-1.135;QD=1.75;ReadPosRankSum=2.706;SB=-2.798e+01 GT:AD:DP:GQ:PL 1/1:3,21:24:9:74,9,0 chrXIII 21337 . G C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=1.67;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:9:72,9,0 chrXIII 21345 . G C 127.13 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;QD=3.97;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:18:160,18,0 chrXIII 21370 . A G 286 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=6.65;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:39:319,39,0 chrXIII 21375 . C T 323 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=6.33;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:39:356,39,0 chrXIII 21391 . A G 358 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=5.97;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:45:391,45,0 chrXIII 21408 . G A 429 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=7.03;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:51:462,51,0 chrXIII 21409 . T C 408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=1.453;QD=6.58;ReadPosRankSum=1.676;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:51:441,51,0 chrXIII 21424 . A G 488 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=7.28;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:60:521,60,0 chrXIII 21430 . A G 441 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=7.11;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:54:474,54,0 chrXIII 21436 . G A 356 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.14;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:42:389,42,0 chrXIII 21439 . G A 318 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.39;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:39:351,39,0 chrXIII 21454 . T A 281 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.725;QD=4.46;ReadPosRankSum=2.372;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,61:63:36:314,36,0 chrXIII 21463 . A G 340 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.67;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:42:373,42,0 chrXIII 21478 . C A 435 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.37;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:51:468,51,0 chrXIII 21480 . A C 413 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.00;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:51:446,51,0 chrXIII 21490 . A G 464 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.82;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:57:497,57,0 chrXIII 21496 . A G 401 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.90;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:48:434,48,0 chrXIII 21523 . A G 576 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=7.89;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:75:609,75,0 chrXIII 21525 . A T 612 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=8.38;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:75:645,75,0 chrXIII 21531 . C T 820 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=9.43;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:96:853,96,0 chrXIII 21547 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=12.10;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1388,159,0 chrXIII 21556 . A G 1438 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.61;MQ0=0;QD=12.50;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1471,174,0 chrXIII 21881 . C G 535 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.58;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:66:568,66,0 chrXIII 22318 . A G 4197.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.21;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4197,477,0 chrXIII 22495 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.95;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4002,447,0 chrXIII 22567 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.0735;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.97;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4365,477,0 chrXIII 22768 . A G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.192;DP=208;Dels=0.00;FS=9.097;HaplotypeScore=13.6821;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.105;QD=21.03;ReadPosRankSum=3.418;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:4,204:208:99:4375,504,0 chrXIII 22888 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4012,459,0 chrXIII 23203 . T C 5236.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5236,597,0 chrXIII 23353 . T C 4952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=231;Dels=0.00;FS=17.293;HaplotypeScore=15.9235;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.813;QD=21.44;ReadPosRankSum=2.961;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:3,228:231:99:4952,558,0 chrXIII 23573 . C T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.93;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3600,405,0 chrXIII 23630 . A C 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.850;QD=22.38;ReadPosRankSum=1.716;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4766,537,0 chrXIII 23724 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.367;QD=22.36;ReadPosRankSum=1.709;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3399,387,0 chrXIII 23828 . A G 2356 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=19.00;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2389,276,0 chrXIII 23863 . A G 2201 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=18.04;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2234,252,0 chrXIII 23864 . G A 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-0.370;QD=18.49;ReadPosRankSum=2.350;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2307,252,0 chrXIII 24034 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=25.34;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3548,381,0 chrXIII 24061 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.47;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3303,384,0 chrXIII 24106 . C G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.90;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3344,378,0 chrXIII 24134 . A T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.13;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3282,360,0 chrXIII 24280 . G A 5664.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.6321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.50;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5664,615,0 chrXIII 24474 . G T 5276.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.35;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5276,573,0 chrXIII 24556 . T A 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=3.003;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;MQRankSum=-0.019;QD=20.52;ReadPosRankSum=2.424;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3940,453,0 chrXIII 24568 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=19.05;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3581,408,0 chrXIII 24592 . T C 2737 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=16.59;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2770,315,0 chrXIII 24595 . T A 2793 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=16.53;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2826,315,0 chrXIII 24625 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=14.49;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2481,276,0 chrXIII 24637 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=185;Dels=0.00;FS=3.031;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-0.949;QD=14.09;ReadPosRankSum=2.423;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:2640,306,0 chrXIII 24712 . C A 5226.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.65;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5226,564,0 chrXIII 24775 . C T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=22.22;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3978,435,0 chrXIII 24787 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=174;Dels=0.00;FS=3.086;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=-1.071;QD=20.69;ReadPosRankSum=1.712;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3600,420,0 chrXIII 24877 . T G 4051.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.1065;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.38;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4051,462,0 chrXIII 24997 . T C 4398.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.90;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4398,501,0 chrXIII 25021 . C A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.54;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3676,399,0 chrXIII 25025 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.107;DP=190;Dels=0.00;FS=14.170;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=1.156;QD=18.26;ReadPosRankSum=3.385;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:4,184:190:99:3469,393,0 chrXIII 25114 . T A 6296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.495;QD=23.94;ReadPosRankSum=1.719;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:6296,682,0 chrXIII 25168 . G A 5315.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.91;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5315,582,0 chrXIII 25294 . A G 5939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.617;QD=21.68;ReadPosRankSum=1.694;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:1,271:274:99:5939,690,0 chrXIII 25507 . A T 5140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=250;Dels=0.00;FS=6.108;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.025;QD=20.56;ReadPosRankSum=2.400;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:2,248:250:99:5140,564,0 chrXIII 25508 . C T 5150.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.68;SB=-3.329e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5150,564,0 chrXIII 25638 . C T 5148.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.83;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5148,579,0 chrXIII 25829 . T C 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=200;Dels=0.00;FS=6.399;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.688;QD=22.46;ReadPosRankSum=2.413;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4492,510,0 chrXIII 26073 . C G 4106.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.39;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4106,462,0 chrXIII 26089 . A G 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=186;Dels=0.00;FS=6.381;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.188;QD=21.76;ReadPosRankSum=2.396;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4048,465,0 chrXIII 26166 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.58;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3971,450,0 chrXIII 26228 . G A 4008.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.6763;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.66;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4008,438,0 chrXIII 26263 . G A 3870.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.11;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3870,444,0 chrXIII 26434 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.37;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1576,174,0 chrXIII 26589 . A T 75.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=8.39;SB=-5.139e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:108,12,0 chrXIII 26609 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrXIII 26922 . A C 3526.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.99;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3526,402,0 chrXIII 27268 . G T 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=19.4320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.584;QD=23.00;ReadPosRankSum=1.390;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3956,441,0 chrXIII 27981 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5328;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.31;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1885,204,0 chrXIII 28338 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.595;QD=23.70;ReadPosRankSum=1.651;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3067,345,0 chrXIII 28593 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4092;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.62;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3483,381,0 chrXIII 28623 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.80;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3420,387,0 chrXIII 28695 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.87;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3434,378,0 chrXIII 28764 . A T 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=6.324;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.305;QD=23.56;ReadPosRankSum=2.404;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3793,414,0 chrXIII 29118 . G A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.31;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3461,390,0 chrXIII 29145 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=177;Dels=0.00;FS=2.670;HaplotypeScore=10.2245;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.462;QD=17.00;ReadPosRankSum=2.421;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,171:177:99:3042,354,0 chrXIII 29370 . G A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.79;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3851,429,0 chrXIII 29616 . T A 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=162;Dels=0.00;FS=3.008;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.039;QD=21.66;ReadPosRankSum=2.340;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:3,155:162:99:3509,396,0 chrXIII 29765 . A T 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.051;QD=19.82;ReadPosRankSum=1.651;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3390,378,0 chrXIII 29779 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=3.663;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.745;QD=18.31;ReadPosRankSum=1.652;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3200,360,0 chrXIII 29826 . C T 4463.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.67;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4463,486,0 chrXIII 29994 . T G 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=197;Dels=0.00;FS=9.574;HaplotypeScore=15.1748;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.321;QD=21.35;ReadPosRankSum=2.964;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4206,483,0 chrXIII 30303 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.13;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3652,426,0 chrXIII 30379 . T A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.06;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3598,390,0 chrXIII 30523 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.25;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2567,288,0 chrXIII 30529 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.44;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2456,267,0 chrXIII 30585 . G C 3045 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.07;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3078,354,0 chrXIII 30827 . A G 2878 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.32;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2911,336,0 chrXIII 30836 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.18;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2761,297,0 chrXIII 30882 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.21;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1993,216,0 chrXIII 31192 . C A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.01;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3865,429,0 chrXIII 31379 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.03;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3581,387,0 chrXIII 31715 . T A 69.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.388;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=131.6133;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=2.101;QD=0.86;ReadPosRankSum=-5.679;SB=-2.751e+01 GT:AD:DP:GQ:PL 1/1:62,19:81:12:102,12,0 chrXIII 31800 . A G 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=97;Dels=0.01;FS=8.355;HaplotypeScore=15.0229;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.090;QD=21.60;ReadPosRankSum=2.398;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2128,243,0 chrXIII 31828 . G T 1604 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=19.80;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1637,177,0 chrXIII 31871 . T A 1012 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=14.46;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1045,117,0 chrXIII 31872 . T C 1012 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=14.46;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1045,120,0 chrXIII 32078 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.292;QD=23.56;ReadPosRankSum=1.698;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2413,270,0 chrXIII 32108 . T C 2148 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.70;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2181,249,0 chrXIII 32369 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=156;Dels=0.00;FS=8.323;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.325;QD=20.65;ReadPosRankSum=2.417;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:3255,384,0 chrXIII 32504 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.36;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3093,333,0 chrXIII 32693 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.55;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3811,417,0 chrXIII 32868 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.29;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4076,453,0 chrXIII 32986 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DP=140;Dels=0.00;FS=10.520;HaplotypeScore=10.8488;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.777;QD=22.98;ReadPosRankSum=2.792;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3250,349,0 chrXIII 33236 . G A 4680.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.6877;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.83;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4680,507,0 chrXIII 33242 . G T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.7317;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.01;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4392,483,0 chrXIII 33705 . A T 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=139;Dels=0.00;FS=2.590;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.210;QD=21.88;ReadPosRankSum=2.950;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3074,333,0 chrXIII 33836 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8312;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.17;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2594,288,0 chrXIII 33845 . A C 2275 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.03;FS=0.000;HaplotypeScore=10.5139;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.06;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2308,267,0 chrXIII 34473 . T G 6034.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=14.5787;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-3.450e+03 GT:AD:DP:GQ:PL 1/1:0,280:284:99:6034,690,0 chrXIII 34777 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.68;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4059,441,0 chrXIII 34804 . C A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.49;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3755,402,0 chrXIII 34890 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.75;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3263,366,0 chrXIII 35547 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.78;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3154,339,0 chrXIII 35559 . C G 3012 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.31;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3045,354,0 chrXIII 35592 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.676;QD=20.69;ReadPosRankSum=1.626;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3414,399,0 chrXIII 35651 . C T 3880.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.10;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3880,414,0 chrXIII 35720 . T A 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=3.064;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.791;QD=21.46;ReadPosRankSum=1.625;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3477,378,0 chrXIII 35726 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=176;Dels=0.00;FS=6.053;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.823;QD=19.41;ReadPosRankSum=2.857;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3417,387,0 chrXIII 36081 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=163;Dels=0.00;FS=14.645;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.181;QD=23.61;ReadPosRankSum=2.956;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:3,158:163:99:3849,447,0 chrXIII 36261 . G A 5331.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.28;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5331,603,0 chrXIII 36440 . T C 4948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=222;Dels=0.00;FS=6.699;HaplotypeScore=11.6620;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.240;QD=22.29;ReadPosRankSum=2.416;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:4948,570,0 chrXIII 36544 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=186;Dels=0.00;FS=8.606;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.299;QD=21.99;ReadPosRankSum=2.396;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4090,468,0 chrXIII 36672 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.259;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.553;QD=21.88;ReadPosRankSum=1.708;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3206,363,0 chrXIII 36940 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.57;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3247,372,0 chrXIII 37053 . T C 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.233;QD=22.61;ReadPosRankSum=1.703;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2701,315,0 chrXIII 37126 . G T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.90;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3729,402,0 chrXIII 37200 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=17.4108;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.14;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3444,384,0 chrXIII 37459 . G A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=22.0315;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.71;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5240,570,0 chrXIII 37511 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.41;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4511,498,0 chrXIII 37516 . G C 4400.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.00;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4400,504,0 chrXIII 37611 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.4717;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.34;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4186,453,0 chrXIII 37647 . G A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.10;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4573,498,0 chrXIII 37836 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=7.109;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.973;QD=20.66;ReadPosRankSum=2.369;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3823,438,0 chrXIII 37845 . A T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.25;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3504,396,0 chrXIII 37888 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4976;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=16.67;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2384,261,0 chrXIII 37897 . A T 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.821;HaplotypeScore=4.8817;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.167;QD=14.83;ReadPosRankSum=1.706;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2050,231,0 chrXIII 38045 . G T 3215 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.2698;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.15;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3248,354,0 chrXIII 38121 . A C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1198;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.66;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3809,444,0 chrXIII 38654 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3526,381,0 chrXIII 38741 . G C 2687 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.02;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2720,306,0 chrXIII 38767 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=133;Dels=0.00;FS=2.865;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-2.043;QD=21.36;ReadPosRankSum=2.376;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2874,330,0 chrXIII 39077 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.1196;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.34;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3350,369,0 chrXIII 39176 . A T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3736,414,0 chrXIII 39248 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.3339;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.616;QD=20.10;ReadPosRankSum=-0.407;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3028,345,0 chrXIII 39622 . T C 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=236;Dels=0.00;FS=3.013;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=2.044;QD=21.44;ReadPosRankSum=2.398;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5060,582,0 chrXIII 39683 . G A 5175.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5175,585,0 chrXIII 39790 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.01;FS=5.374;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.620;QD=21.74;ReadPosRankSum=1.625;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3543,393,0 chrXIII 39791 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-1.259;QD=21.41;ReadPosRankSum=1.689;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3490,396,0 chrXIII 39858 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=5.293;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.558;QD=20.70;ReadPosRankSum=1.645;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3332,393,0 chrXIII 40087 . T G 1206 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.93;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1239,141,0 chrXIII 40487 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.241;QD=23.28;ReadPosRankSum=1.666;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3678,411,0 chrXIII 40511 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.0172;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.58;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3961,426,0 chrXIII 41051 . G T 5352.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5352,571,0 chrXIII 41405 . T A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.63;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4300,471,0 chrXIII 41627 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.59;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3750,441,0 chrXIII 42028 . A G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=4.611;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.664;QD=21.38;ReadPosRankSum=1.706;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2898,348,0 chrXIII 42127 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=162;Dels=0.00;FS=5.913;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.671;QD=22.83;ReadPosRankSum=1.667;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3699,426,0 chrXIII 42787 . T A 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-1.034;QD=17.71;ReadPosRankSum=1.629;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2406,276,0 chrXIII 42789 . G A 2485 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.27;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2518,273,0 chrXIII 43282 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.56;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2048,228,0 chrXIII 43366 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.00;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4761,522,0 chrXIII 43624 . T G 3503.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.90;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3503,411,0 chrXIII 43722 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.59;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4229,459,0 chrXIII 43753 . T A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3524;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.90;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3239,354,0 chrXIII 44028 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.08;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2692,294,0 chrXIII 44503 . C T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.74;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4478,489,0 chrXIII 44904 . T A 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.481;QD=24.08;ReadPosRankSum=1.684;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1767,192,0 chrXIII 45050 . G C 3804.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.4300;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.70;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3804,432,0 chrXIII 45254 . A G 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.623;QD=22.10;ReadPosRankSum=1.716;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:4929,561,0 chrXIII 45369 . A G 6690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=287;Dels=0.00;FS=4.502;HaplotypeScore=13.4127;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.614;QD=23.31;ReadPosRankSum=1.720;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,282:287:99:6690,765,0 chrXIII 45656 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.4716;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.96;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4524,495,0 chrXIII 45908 . T C 1365 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.23;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1398,159,0 chrXIII 45947 . A G 715 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.44;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:748,87,0 chrXIII 46009 . C T 654 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.10;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:687,75,0 chrXIII 46032 . A G 1062 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.04;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1095,126,0 chrXIII 46074 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.39;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1998,219,0 chrXIII 46256 . C G 3573.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.47;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3573,399,0 chrXIII 46481 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.07;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3385,366,0 chrXIII 46563 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.50;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2892,324,0 chrXIII 46758 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.46;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3237,360,0 chrXIII 47087 . A G 6881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=289;Dels=0.00;FS=11.847;HaplotypeScore=24.9216;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-2.041;QD=23.81;ReadPosRankSum=2.432;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,286:289:99:6881,789,0 chrXIII 47331 . C T 7037.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=14.3774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.07;SB=-3.616e+03 GT:AD:DP:GQ:PL 1/1:0,304:305:99:7037,774,0 chrXIII 47781 . A C 2742 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.94;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2775,309,0 chrXIII 47811 . A G 3068 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.39;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3101,354,0 chrXIII 48018 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.47;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2700,294,0 chrXIII 48318 . T C 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=106;Dels=0.00;FS=6.584;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.266;QD=22.05;ReadPosRankSum=2.402;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,102:106:99:2370,273,0 chrXIII 48342 . C T 2258 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.81;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2291,249,0 chrXIII 48348 . T C 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.617;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.407;QD=19.79;ReadPosRankSum=1.702;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2309,267,0 chrXIII 48393 . G C 2495 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.19;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2528,288,0 chrXIII 48814 . A G 3103 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.82;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3136,360,0 chrXIII 48927 . G A 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.894;DP=154;Dels=0.00;FS=3.039;HaplotypeScore=8.8708;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.758;QD=20.24;ReadPosRankSum=-0.260;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3150,344,0 chrXIII 49254 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2880,321,0 chrXIII 49588 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.52;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2832,312,0 chrXIII 49712 . A C 1499 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.99;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1532,183,0 chrXIII 49717 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=17.81;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1422,165,0 chrXIII 49730 . G T 1321 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=20.97;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1354,150,0 chrXIII 49768 . T C 714 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.31;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:84:747,84,0 chrXIII 49898 . C T 1262 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1295,141,0 chrXIII 49899 . A G 1182 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1215,138,0 chrXIII 49933 . G A 1162 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.88;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1195,126,0 chrXIII 49934 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.32;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1176,126,0 chrXIII 50020 . T A 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.022;QD=19.04;ReadPosRankSum=1.687;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1499,159,0 chrXIII 50646 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.54;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4308,480,0 chrXIII 50831 . C T 3974.01 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.2095;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.03;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3974,429,0 chrXIII 50835 . T C 3577.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=188;Dels=0.00;FS=6.527;HaplotypeScore=7.4548;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-1.565;QD=19.03;ReadPosRankSum=2.370;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:3577,417,0 chrXIII 50840 . A G 3603.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=3.026;HaplotypeScore=5.0888;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.808;QD=19.48;ReadPosRankSum=2.383;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3603,411,0 chrXIII 50890 . C A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.67;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4209,468,0 chrXIII 50955 . T G 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=192;Dels=0.00;FS=9.667;HaplotypeScore=18.5521;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.376;QD=21.65;ReadPosRankSum=2.878;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:4156,471,0 chrXIII 51084 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=3.058;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.742;QD=22.77;ReadPosRankSum=1.713;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4144,471,0 chrXIII 51141 . A T 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.622;QD=23.33;ReadPosRankSum=1.665;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3709,411,0 chrXIII 51343 . A G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.869;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;MQRankSum=-1.665;QD=15.26;ReadPosRankSum=1.688;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2413,276,0 chrXIII 51348 . A C 2232 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=14.49;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2265,261,0 chrXIII 51354 . G A 2104 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=13.66;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2137,231,0 chrXIII 51358 . G T 1929 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=3.861;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;MQRankSum=-1.052;QD=11.83;ReadPosRankSum=1.265;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:1962,216,0 chrXIII 51368 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=11.43;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:1930,219,0 chrXIII 51433 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.55;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3929,441,0 chrXIII 51543 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=182;Dels=0.00;FS=6.744;HaplotypeScore=9.6051;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-0.506;QD=22.09;ReadPosRankSum=2.423;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4020,465,0 chrXIII 51596 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=2.830;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=1.723;QD=23.24;ReadPosRankSum=2.403;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3719,435,0 chrXIII 51658 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=3.013;HaplotypeScore=8.6252;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.683;QD=22.19;ReadPosRankSum=2.388;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3551,405,0 chrXIII 51681 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.233;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.650;QD=22.03;ReadPosRankSum=1.710;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3547,408,0 chrXIII 51750 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=2.883;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.386;QD=22.57;ReadPosRankSum=2.397;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3216,372,0 chrXIII 51894 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=175;Dels=0.00;FS=7.510;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.175;QD=22.75;ReadPosRankSum=2.407;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3981,453,0 chrXIII 51951 . T A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.0133;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.10;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4273,480,0 chrXIII 52035 . G A 5959.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=16.8723;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.42;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5959,646,0 chrXIII 52509 . C A 3187 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.93;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3220,351,0 chrXIII 52671 . G A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4236,483,0 chrXIII 52782 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=207;Dels=0.00;FS=3.906;HaplotypeScore=14.7445;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.121;QD=20.87;ReadPosRankSum=1.698;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:4321,507,0 chrXIII 52876 . A G 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.188;QD=22.52;ReadPosRankSum=1.714;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4324,492,0 chrXIII 53276 . C G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.66;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,151:156:99:3535,399,0 chrXIII 53503 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.72;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2538,288,0 chrXIII 53825 . C A 2141 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=12.98;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:2174,240,0 chrXIII 53841 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=12.88;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2094,246,0 chrXIII 53897 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9777;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.10;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3125,342,0 chrXIII 53934 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.049;DP=187;Dels=0.00;FS=9.244;HaplotypeScore=13.4915;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.022;QD=19.00;ReadPosRankSum=2.497;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:3553,383,0 chrXIII 53982 . C G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=23.23;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4019,462,0 chrXIII 54071 . C T 4901.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.8909;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.14;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4901,528,0 chrXIII 54094 . C T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.06;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4589,495,0 chrXIII 54136 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.95;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3960,444,0 chrXIII 54192 . A C 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=3.565;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.624;QD=22.98;ReadPosRankSum=1.712;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4021,459,0 chrXIII 55022 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.25;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3541,384,0 chrXIII 55092 . T C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;DP=136;Dels=0.00;FS=3.745;HaplotypeScore=11.7859;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.296;QD=19.47;ReadPosRankSum=1.655;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2681,312,0 chrXIII 55152 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.981;QD=22.78;ReadPosRankSum=1.659;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3280,369,0 chrXIII 55367 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.75;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3527,399,0 chrXIII 55453 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.37;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2477,282,0 chrXIII 55550 . A G 2801 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2834,318,0 chrXIII 55803 . G T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4116,444,0 chrXIII 56632 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1396,159,0 chrXIII 57638 . C G 1194 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1227,141,0 chrXIII 57693 . C A 1385 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1418,159,0 chrXIII 57744 . C A 978 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1011,111,0 chrXIII 57944 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.92;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1354,153,0 chrXIII 57995 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.71;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1193,141,0 chrXIII 58037 . G A 1829 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.77;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1862,213,0 chrXIII 58688 . T G 3220.05 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3253,369,0 chrXIII 58860 . G T 2214 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;QD=22.14;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2247,252,0 chrXIII 59260 . T C 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=117;Dels=0.00;FS=6.448;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.016;QD=21.99;ReadPosRankSum=2.386;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2606,297,0 chrXIII 59542 . A G 2415 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.22;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2448,282,0 chrXIII 59776 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1956,219,0 chrXIII 60274 . A T 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.477;QD=23.26;ReadPosRankSum=1.711;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3791,414,0 chrXIII 60349 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.358;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.306;QD=22.34;ReadPosRankSum=1.705;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2937,333,0 chrXIII 60420 . G C 3453.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0154;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.99;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3453,390,0 chrXIII 60610 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.73;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3260,363,0 chrXIII 60706 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.89;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2665,294,0 chrXIII 60754 . T G 2769 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2802,318,0 chrXIII 61147 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.443;QD=21.91;ReadPosRankSum=1.665;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3418,405,0 chrXIII 61164 . A C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=139;Dels=0.00;FS=5.702;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.152;QD=22.79;ReadPosRankSum=2.906;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3201,360,0 chrXIII 61486 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.15;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2780,300,0 chrXIII 61663 . T C 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=112;Dels=0.00;FS=3.090;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.291;QD=21.53;ReadPosRankSum=1.669;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2444,282,0 chrXIII 61741 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.51;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2878,327,0 chrXIII 62010 . G C 2695 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2728,312,0 chrXIII 62344 . C A 2062 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.45;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2095,228,0 chrXIII 62449 . A G 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.810;DP=111;Dels=0.00;FS=5.059;HaplotypeScore=6.5931;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=1.383;QD=20.09;ReadPosRankSum=0.524;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2263,236,0 chrXIII 62460 . G T 2401 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.70;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2434,273,0 chrXIII 62507 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.7254;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=17.49;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2079,237,0 chrXIII 62513 . A C 1964 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=17.08;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1997,225,0 chrXIII 62572 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.70;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2071,228,0 chrXIII 62594 . A G 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.264;QD=21.54;ReadPosRankSum=1.670;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2445,276,0 chrXIII 62630 . G T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5131;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.05;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3374,384,0 chrXIII 62659 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4485;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.84;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3298,372,0 chrXIII 62743 . T C 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.132;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.683;QD=20.65;ReadPosRankSum=1.637;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2304,261,0 chrXIII 62808 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.433;QD=22.51;ReadPosRankSum=1.707;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3094,348,0 chrXIII 62996 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4141,453,0 chrXIII 63206 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.11;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3906,438,0 chrXIII 63338 . G A 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-0.742;QD=19.64;ReadPosRankSum=1.567;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2920,330,0 chrXIII 63339 . A G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=148;Dels=0.00;FS=5.772;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.558;QD=19.41;ReadPosRankSum=2.898;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:2906,324,0 chrXIII 63358 . C A 2588 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.46;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2621,285,0 chrXIII 63473 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.74;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1711,192,0 chrXIII 63482 . T C 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=84;Dels=0.00;FS=8.468;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.807;QD=18.74;ReadPosRankSum=2.391;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1607,183,0 chrXIII 63644 . T G 1346 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.61;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1379,156,0 chrXIII 63902 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.03;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2935,321,0 chrXIII 63914 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.83;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2678,306,0 chrXIII 64085 . A G 1990 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.51;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2023,234,0 chrXIII 64154 . C A 1613 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.40;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1646,183,0 chrXIII 64223 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.73;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1663,186,0 chrXIII 64224 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.99;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1586,180,0 chrXIII 64394 . T A 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=3.925;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.338;QD=23.01;ReadPosRankSum=1.688;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1851,198,0 chrXIII 64972 . C A 2979 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.42;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3012,330,0 chrXIII 65232 . A G 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.993;QD=22.65;ReadPosRankSum=1.615;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2049,234,0 chrXIII 65318 . T C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=121;Dels=0.00;FS=3.424;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.389;QD=19.71;ReadPosRankSum=1.675;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2418,279,0 chrXIII 65333 . A G 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.587;QD=21.51;ReadPosRankSum=1.676;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2722,309,0 chrXIII 65366 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.84;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2829,309,0 chrXIII 65426 . A T 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=4.223;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.179;QD=24.33;ReadPosRankSum=1.674;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2928,324,0 chrXIII 65498 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.607;QD=21.80;ReadPosRankSum=1.638;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2453,279,0 chrXIII 65513 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.31;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2376,258,0 chrXIII 65534 . A G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.389;QD=20.65;ReadPosRankSum=1.705;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2717,306,0 chrXIII 66018 . T C 2827 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.50;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2860,327,0 chrXIII 66032 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.41;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3009,327,0 chrXIII 66092 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=141;Dels=0.00;FS=3.024;HaplotypeScore=7.9333;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-1.037;QD=19.55;ReadPosRankSum=2.415;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2789,318,0 chrXIII 66227 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.24;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2869,318,0 chrXIII 66290 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.08;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2086,237,0 chrXIII 66329 . T G 2236 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.54;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2269,252,0 chrXIII 66506 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.94;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3335,381,0 chrXIII 66524 . A G 2978 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.40;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3011,354,0 chrXIII 66807 . T C 2451 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.88;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2484,291,0 chrXIII 66861 . G A 2129 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2162,243,0 chrXIII 66995 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.26;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2406,270,0 chrXIII 67415 . T C 4975.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.9228;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.93;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4975,564,0 chrXIII 67999 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8820;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=16.91;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2349,267,0 chrXIII 68035 . A G 2199 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;MQRankSum=-1.732;QD=18.64;ReadPosRankSum=1.703;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2232,252,0 chrXIII 68036 . T A 2326 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=19.88;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2359,252,0 chrXIII 68045 . T C 1864 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579;DP=113;Dels=0.00;FS=5.346;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.904;QD=16.50;ReadPosRankSum=0.782;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1897,228,0 chrXIII 68046 . A G 1841 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.29;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1874,225,0 chrXIII 68047 . G A 1874 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.58;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1907,225,0 chrXIII 68049 . T A 2050 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;QD=17.52;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2083,231,0 chrXIII 68077 . A G 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=0.993;QD=19.24;ReadPosRankSum=1.707;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2650,300,0 chrXIII 68110 . A T 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=1.479;QD=14.96;ReadPosRankSum=1.707;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2082,228,0 chrXIII 68113 . A G 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;MQRankSum=0.680;QD=13.74;ReadPosRankSum=1.706;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:1916,216,0 chrXIII 68187 . C A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8433;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.54;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3243,354,0 chrXIII 68270 . A G 2479 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8020;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.13;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2512,285,0 chrXIII 68326 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.1266;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.89;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4006,465,0 chrXIII 68600 . C G 9680.01 filter AC=2;AF=1.00;AN=2;DP=433;Dels=0.00;FS=0.000;HaplotypeScore=28.6051;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.36;SB=-4.483e+03 GT:AD:DP:GQ:PL 1/1:0,428:433:99:9680,1113,0 chrXIII 68665 . C T 8475.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=18.4596;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.42;SB=-3.550e+03 GT:AD:DP:GQ:PL 1/1:0,346:347:99:8475,928,0 chrXIII 68826 . T C 7490.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=368;Dels=0.00;FS=4.260;HaplotypeScore=21.7369;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.913;QD=20.35;ReadPosRankSum=1.723;SB=-3.511e+03 GT:AD:DP:GQ:PL 1/1:1,367:368:99:7490,869,0 chrXIII 68908 . G A 5634.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=20.3303;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.59;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5634,615,0 chrXIII 68960 . G A 6501.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=17.4564;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.55;SB=-3.590e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6501,703,0 chrXIII 69113 . A G 5584.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.53;SB=-3.071e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5584,642,0 chrXIII 69298 . G A 7353.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=20.9600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-3.947e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:7353,799,0 chrXIII 70136 . G T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.6010;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.49;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4298,486,0 chrXIII 70163 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.02;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4052,465,0 chrXIII 70985 . T A 7035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=23.6915;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.251;QD=23.14;ReadPosRankSum=1.675;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:7035,766,0 chrXIII 71137 . A G 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.781;QD=19.79;ReadPosRankSum=1.705;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,255:259:99:5125,579,0 chrXIII 71382 . T C 2889 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.26;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2922,336,0 chrXIII 71397 . T C 2795 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.14;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2828,318,0 chrXIII 71475 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3798,408,0 chrXIII 71613 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=173;Dels=0.00;FS=10.743;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.481;QD=23.96;ReadPosRankSum=2.378;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:4145,471,0 chrXIII 71724 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.5168;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.74;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4189,474,0 chrXIII 71867 . A T 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6370;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.397;QD=23.09;ReadPosRankSum=1.713;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4294,468,0 chrXIII 72351 . C A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.3382;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.92;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4362,489,0 chrXIII 72474 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.872;QD=23.06;ReadPosRankSum=1.708;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3275,366,0 chrXIII 72510 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.95;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3017,327,0 chrXIII 72525 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.58;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2832,315,0 chrXIII 72588 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.12;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2970,333,0 chrXIII 72591 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=21.66;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3152,339,0 chrXIII 72609 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.01;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3100,339,0 chrXIII 72669 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.88;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3326,372,0 chrXIII 72936 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3334,357,0 chrXIII 73242 . T G 5932.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.17;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5932,666,0 chrXIII 73368 . G A 6117.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.71;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:6117,661,0 chrXIII 73503 . A G 5292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=266;Dels=0.00;FS=4.924;HaplotypeScore=16.6854;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.612;QD=19.89;ReadPosRankSum=3.389;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:4,262:266:99:5292,597,0 chrXIII 73530 . C T 4893.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.1929;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.47;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4893,537,0 chrXIII 73605 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=20.1979;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.54;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4554,507,0 chrXIII 73993 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.68;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:81:724,81,0 chrXIII 74072 . A T 1620 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=24.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1653,180,0 chrXIII 74083 . T C 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-0.405;QD=23.26;ReadPosRankSum=2.365;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1382,156,0 chrXIII 74124 . T C 1172 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=23.44;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1205,135,0 chrXIII 74173 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=23.67;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1737,195,0 chrXIII 74186 . G T 1882 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.95;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1915,201,0 chrXIII 74237 . C A 2013 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.37;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2046,225,0 chrXIII 74304 . G A 1230 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=17.83;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1263,141,0 chrXIII 74305 . G T 1211 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=17.30;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1244,141,0 chrXIII 74306 . T A 1270 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=7.089;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;MQRankSum=-1.617;QD=17.16;ReadPosRankSum=2.317;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1303,147,0 chrXIII 74338 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=14.00;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1433,162,0 chrXIII 74346 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=14.96;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1679,180,0 chrXIII 74436 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.94;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2534,282,0 chrXIII 74704 . A G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.3201;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.874;QD=22.82;ReadPosRankSum=1.671;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2635,297,0 chrXIII 74868 . T G 1577 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1610,189,0 chrXIII 75046 . C A 2685 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.75;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2718,300,0 chrXIII 75133 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2934,324,0 chrXIII 75258 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3329,366,0 chrXIII 75304 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=157;Dels=0.00;FS=3.039;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.227;QD=20.92;ReadPosRankSum=1.709;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,150:157:99:3285,375,0 chrXIII 75396 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=150;Dels=0.00;FS=2.676;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.450;QD=23.58;ReadPosRankSum=2.417;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3537,399,0 chrXIII 75576 . A G 4443.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.5736;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.78;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4443,501,0 chrXIII 75601 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.74;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3892,444,0 chrXIII 75613 . A G 4132.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.7012;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.22;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4132,474,0 chrXIII 75702 . A G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=173;Dels=0.00;FS=2.757;HaplotypeScore=11.4963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.335;QD=23.31;ReadPosRankSum=2.378;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4032,459,0 chrXIII 76102 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,216:221:99:4763,519,0 chrXIII 76194 . A C 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=4.556;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.466;QD=21.90;ReadPosRankSum=1.679;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,196:200:99:4380,507,0 chrXIII 76222 . A T 4730.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.42;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4730,522,0 chrXIII 76243 . A G 4387.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.83;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:4387,513,0 chrXIII 76292 . T G 4353.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.5191;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.93;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4353,483,0 chrXIII 76445 . T C 5209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=237;Dels=0.00;FS=3.925;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.870;QD=21.98;ReadPosRankSum=1.717;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5209,594,0 chrXIII 76517 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.95;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3751,432,0 chrXIII 76522 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.92;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3686,417,0 chrXIII 76661 . T C 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=20.9896;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.614;QD=21.77;ReadPosRankSum=1.643;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5116,585,0 chrXIII 76699 . T C 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=223;Dels=0.00;FS=2.928;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.134;QD=22.50;ReadPosRankSum=2.394;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:5017,579,0 chrXIII 77048 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.56;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2989,333,0 chrXIII 77093 . C A 2485 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.80;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2518,273,0 chrXIII 77125 . G C 2027 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.8222;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.10;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2060,231,0 chrXIII 77144 . C T 1541 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=10.4416;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=15.72;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1574,180,0 chrXIII 77201 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.72;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3160,342,0 chrXIII 77212 . A G 3084 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.77;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3117,369,0 chrXIII 77335 . C T 4537.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.88;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4537,495,0 chrXIII 77482 . C T 5307.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.89;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5307,582,0 chrXIII 77485 . T C 5133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.797;QD=20.13;ReadPosRankSum=1.650;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:1,251:255:99:5133,579,0 chrXIII 77784 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.07;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3576,405,0 chrXIII 77846 . A G 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.220;QD=20.63;ReadPosRankSum=1.642;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2405,276,0 chrXIII 77879 . T G 1901 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.22;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1934,219,0 chrXIII 77979 . T G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5005;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.127;QD=22.57;ReadPosRankSum=1.705;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2900,333,0 chrXIII 77997 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.81;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3173,351,0 chrXIII 78077 . G A 1929 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.17;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1962,213,0 chrXIII 78103 . A G 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.855;QD=21.04;ReadPosRankSum=1.686;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1611,186,0 chrXIII 78162 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.2874;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=18.69;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1939,213,0 chrXIII 78178 . T C 1884 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.53;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1917,222,0 chrXIII 78303 . T A 2938 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.69;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2971,333,0 chrXIII 78428 . T C 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=92;Dels=0.00;FS=2.736;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.203;QD=21.72;ReadPosRankSum=2.396;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:2031,231,0 chrXIII 78446 . T A 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=2.748;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.152;QD=24.11;ReadPosRankSum=2.397;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2275,246,0 chrXIII 78509 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=3.310;HaplotypeScore=9.4445;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.508;QD=19.78;ReadPosRankSum=1.663;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3000,333,0 chrXIII 78658 . T C 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.447;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.015;QD=21.71;ReadPosRankSum=1.702;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2530,285,0 chrXIII 78710 . A C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=138;Dels=0.00;FS=6.711;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.951;QD=20.13;ReadPosRankSum=2.414;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2811,318,0 chrXIII 78726 . G T 3078 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.83;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3111,339,0 chrXIII 78836 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.66;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2615,291,0 chrXIII 78839 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.31;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2505,285,0 chrXIII 78923 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.22;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3467,390,0 chrXIII 79162 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.99;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2976,321,0 chrXIII 79324 . G T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.8082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3464,387,0 chrXIII 79713 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.287;QD=22.47;ReadPosRankSum=1.709;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3416,390,0 chrXIII 79761 . T G 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=4.502;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.060;QD=22.72;ReadPosRankSum=1.712;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3908,438,0 chrXIII 79783 . T C 3088 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.06;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3121,363,0 chrXIII 79825 . A C 543.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.167;DP=171;Dels=0.00;FS=42.241;HaplotypeScore=233.3997;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=3.529;QD=3.18;ReadPosRankSum=-6.652;SB=2.49 GT:AD:DP:GQ:PL 1/1:129,38:171:12:576,12,0 chrXIII 79850 . A G 2540 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.93;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2573,294,0 chrXIII 79904 . G C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.09;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,178:185:99:4086,459,0 chrXIII 79968 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.39;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3929,432,0 chrXIII 80220 . G A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.8950;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.42;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4596,504,0 chrXIII 80292 . T C 4847.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.97;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4847,546,0 chrXIII 80403 . T C 2780 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5574;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.59;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2813,318,0 chrXIII 80474 . T C 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=7.126;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.236;QD=18.43;ReadPosRankSum=2.407;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3203,360,0 chrXIII 80475 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=174;Dels=0.00;FS=10.472;HaplotypeScore=3.0520;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-2.227;QD=17.80;ReadPosRankSum=2.925;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:3130,357,0 chrXIII 80519 . A G 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=212;Dels=0.00;FS=6.550;HaplotypeScore=11.7499;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.180;QD=18.46;ReadPosRankSum=2.403;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:3914,453,0 chrXIII 80594 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=146;Dels=0.00;FS=3.027;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.210;QD=21.49;ReadPosRankSum=2.399;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3170,360,0 chrXIII 80884 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=-0.271;QD=19.18;ReadPosRankSum=1.709;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2872,324,0 chrXIII 80887 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=20.19;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3001,336,0 chrXIII 80928 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=17.66;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2647,288,0 chrXIII 80934 . A G 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=149;Dels=0.00;FS=7.280;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;MQRankSum=-0.873;QD=15.46;ReadPosRankSum=2.416;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:2337,264,0 chrXIII 80940 . G T 2274 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.2517;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=15.68;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2307,255,0 chrXIII 81063 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.6516;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.65;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3192,357,0 chrXIII 81111 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=24.30;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3450,378,0 chrXIII 81243 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.51;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3573,396,0 chrXIII 81479 . G T 1651 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1684,183,0 chrXIII 81582 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2349,258,0 chrXIII 81708 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.87;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2869,309,0 chrXIII 81811 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.41;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2632,297,0 chrXIII 81965 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3317,369,0 chrXIII 82027 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.3658;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.705;QD=20.40;ReadPosRankSum=1.705;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2604,306,0 chrXIII 82098 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2559,279,0 chrXIII 82308 . T A 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.281;QD=21.51;ReadPosRankSum=1.708;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3173,354,0 chrXIII 82357 . A G 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.730;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.674;QD=21.91;ReadPosRankSum=1.708;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3210,369,0 chrXIII 82388 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.95;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3832,414,0 chrXIII 83964 . G A 5103.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=17.5375;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.58;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5103,567,0 chrXIII 84079 . T C 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=209;Dels=0.00;FS=6.426;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.488;QD=21.88;ReadPosRankSum=2.414;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4573,516,0 chrXIII 84178 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.24;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3812,429,0 chrXIII 84233 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.765;DP=187;Dels=0.00;FS=18.712;HaplotypeScore=15.4423;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.227;QD=22.65;ReadPosRankSum=4.066;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:6,180:187:99:4236,480,0 chrXIII 84712 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.95;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3993,453,0 chrXIII 84896 . A C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=181;Dels=0.00;FS=4.870;HaplotypeScore=15.4629;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.148;QD=22.59;ReadPosRankSum=1.713;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:4088,471,0 chrXIII 84951 . G T 4784.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.6086;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.66;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4784,528,0 chrXIII 85246 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.0834;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.29;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4079,444,0 chrXIII 85307 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3487,393,0 chrXIII 85892 . A G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.887;QD=21.76;ReadPosRankSum=1.705;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2840,318,0 chrXIII 86707 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9226;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.170;QD=20.47;ReadPosRankSum=1.685;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3063,348,0 chrXIII 86893 . G A 640 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.8809;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=13.62;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:75:673,75,0 chrXIII 86901 . A G 590 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.456;QD=15.53;ReadPosRankSum=1.641;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:69:623,69,0 chrXIII 87110 . C T 748 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:84:781,84,0 chrXIII 87114 . T A 810 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.787;QD=18.41;ReadPosRankSum=1.654;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,43:44:93:843,93,0 chrXIII 87219 . T A 2077 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.15;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2110,237,0 chrXIII 87318 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=102;Dels=0.00;FS=2.971;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.205;QD=23.23;ReadPosRankSum=2.377;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2402,273,0 chrXIII 87360 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.57;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3341,381,0 chrXIII 87584 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.80;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3645,402,0 chrXIII 87831 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=13.3178;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.17;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1232,135,0 chrXIII 87918 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1545,168,0 chrXIII 88106 . T C 2180 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2213,255,0 chrXIII 88146 . T C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.431;QD=21.91;ReadPosRankSum=1.694;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:2093,240,0 chrXIII 88299 . G A 2714 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2747,300,0 chrXIII 88443 . T C 2695 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.05;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2728,315,0 chrXIII 88445 . A T 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=126;Dels=0.00;FS=7.406;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.927;QD=23.15;ReadPosRankSum=2.372;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2950,318,0 chrXIII 88542 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=3.076;HaplotypeScore=8.9838;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.233;QD=22.72;ReadPosRankSum=1.680;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3078,348,0 chrXIII 88632 . T C 2651 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.28;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2684,300,0 chrXIII 88808 . A T 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.64;ReadPosRankSum=1.691;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2019,216,0 chrXIII 89321 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.75;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1797,204,0 chrXIII 89325 . A C 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=88;Dels=0.00;FS=4.293;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.524;QD=19.32;ReadPosRankSum=1.692;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1733,192,0 chrXIII 89364 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.60;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2431,276,0 chrXIII 89556 . T C 2275 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.87;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2308,270,0 chrXIII 89571 . T C 2418 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.84;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2451,279,0 chrXIII 89649 . T A 3092 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.35;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3125,345,0 chrXIII 89860 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.02;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2910,312,0 chrXIII 89876 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.06;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2686,300,0 chrXIII 90300 . T C 2938 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.9397;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=20.55;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2971,336,0 chrXIII 91086 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.85;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3673,423,0 chrXIII 91149 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.65;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3330,363,0 chrXIII 91172 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.89;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3097,351,0 chrXIII 91189 . G C 2835 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.11;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:2868,333,0 chrXIII 91250 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.37;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3064,345,0 chrXIII 91445 . G C 2604 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.07;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2637,297,0 chrXIII 91485 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.97;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2445,267,0 chrXIII 91532 . T C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.464;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.013;QD=21.38;ReadPosRankSum=1.706;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2834,324,0 chrXIII 91583 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.36;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3230,345,0 chrXIII 91587 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.8874;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.95;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3205,351,0 chrXIII 91667 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=141;Dels=0.00;FS=5.441;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.297;QD=21.59;ReadPosRankSum=1.707;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3077,354,0 chrXIII 91844 . T C 3036 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.38;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3069,348,0 chrXIII 91951 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9499;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.37;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2598,303,0 chrXIII 92017 . T A 1747 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.57;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1780,198,0 chrXIII 92586 . G A 4285.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.67;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4285,480,0 chrXIII 93961 . A G 5652.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.91;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5652,645,0 chrXIII 94363 . A G 203.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.46;SB=-1.029e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:236,27,0 chrXIII 94452 . G A 2455 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2488,276,0 chrXIII 94572 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.316;QD=23.89;ReadPosRankSum=2.949;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3273,372,0 chrXIII 94686 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.6743;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.14;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4313,459,0 chrXIII 94695 . C T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.69;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4221,465,0 chrXIII 94898 . G C 3148 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.01;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3181,363,0 chrXIII 95277 . A T 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5909;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.183;QD=21.12;ReadPosRankSum=1.690;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3463,381,0 chrXIII 95285 . C T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.1884;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.30;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3535,384,0 chrXIII 95343 . A C 3436.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.2259;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.63;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3436,402,0 chrXIII 95384 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.9021;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.27;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3700,408,0 chrXIII 95790 . A G 1329 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1362,153,0 chrXIII 96085 . A G 5199.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=22.5347;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.12;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,231:235:99:5199,585,0 chrXIII 96883 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=153;Dels=0.00;FS=4.008;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.388;QD=22.73;ReadPosRankSum=1.709;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3478,405,0 chrXIII 96927 . A T 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=202;Dels=0.00;FS=4.303;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.720;QD=24.95;ReadPosRankSum=1.698;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:5039,552,0 chrXIII 97423 . T C 2197 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.73;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2230,255,0 chrXIII 97656 . T G 1967 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.99;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2000,225,0 chrXIII 97705 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.48;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2417,261,0 chrXIII 97846 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.19;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1495,174,0 chrXIII 97917 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=16.17;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1521,168,0 chrXIII 97921 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=15.27;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1484,162,0 chrXIII 98310 . T C 5196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=241;Dels=0.00;FS=3.608;HaplotypeScore=10.2245;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.631;QD=21.56;ReadPosRankSum=1.660;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5196,600,0 chrXIII 98841 . G A 6049.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.9000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.81;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6049,675,0 chrXIII 98939 . A G 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=212;Dels=0.00;FS=3.466;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.551;QD=20.54;ReadPosRankSum=1.716;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4354,495,0 chrXIII 99141 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.67;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3494,381,0 chrXIII 99579 . G A 831 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=17.68;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:864,96,0 chrXIII 99586 . T C 630 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=16.15;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:75:663,75,0 chrXIII 99659 . C T 952 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.31;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:985,108,0 chrXIII 99676 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.23;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1300,141,0 chrXIII 99717 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.44;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1697,183,0 chrXIII 100054 . A G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.41;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4369,501,0 chrXIII 100142 . C T 5074.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=18.0775;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.54;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5074,552,0 chrXIII 100208 . T G 4317.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.1672;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.69;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4317,483,0 chrXIII 100454 . C T 4961.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.86;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4961,543,0 chrXIII 100551 . C T 5265.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5265,570,0 chrXIII 100694 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=224;Dels=0.00;FS=3.030;HaplotypeScore=12.3187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.660;QD=21.40;ReadPosRankSum=0.948;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4793,535,0 chrXIII 101085 . C T 2368 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=19.90;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2401,261,0 chrXIII 101469 . A T 5459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=254;Dels=0.00;FS=3.220;HaplotypeScore=21.6767;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.123;QD=21.49;ReadPosRankSum=1.678;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5459,615,0 chrXIII 101716 . T C 5379.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.61;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5379,630,0 chrXIII 102104 . C G 4822.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.4687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4822,572,0 chrXIII 102269 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4107,474,0 chrXIII 102554 . C T 4699.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.2145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4699,516,0 chrXIII 102752 . A G 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=6.248;HaplotypeScore=13.3565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.331;QD=22.13;ReadPosRankSum=2.403;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4714,549,0 chrXIII 102794 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.21;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3542,402,0 chrXIII 102879 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.052;QD=20.96;ReadPosRankSum=1.711;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3458,402,0 chrXIII 103133 . T C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.249;QD=22.71;ReadPosRankSum=1.704;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2804,315,0 chrXIII 103169 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.645;DP=139;Dels=0.00;FS=5.495;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.761;QD=21.74;ReadPosRankSum=2.950;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3055,354,0 chrXIII 103211 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.3907;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.30;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3185,354,0 chrXIII 103773 . A G 2754 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.35;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2787,318,0 chrXIII 104516 . A G 3657.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.3078;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.90;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3657,417,0 chrXIII 104584 . A G 2623 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.65;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2656,303,0 chrXIII 104863 . T C 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=212;Dels=0.00;FS=2.562;HaplotypeScore=11.4407;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.332;QD=22.40;ReadPosRankSum=2.882;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:4749,531,0 chrXIII 105255 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=176;Dels=0.00;FS=2.754;HaplotypeScore=14.9235;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.218;QD=20.45;ReadPosRankSum=2.407;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3600,417,0 chrXIII 105326 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.0621;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.65;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3760,423,0 chrXIII 105382 . T A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1696;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.23;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3717,411,0 chrXIII 105406 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.55;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3308,366,0 chrXIII 105409 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.010;QD=19.25;ReadPosRankSum=1.670;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3248,366,0 chrXIII 105757 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.0264;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.42;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4063,474,0 chrXIII 105851 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=171;Dels=0.00;FS=3.766;HaplotypeScore=7.7509;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.256;QD=21.45;ReadPosRankSum=1.671;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3668,414,0 chrXIII 106047 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.05;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3098,348,0 chrXIII 106204 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=117;Dels=0.00;FS=3.795;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.045;QD=22.62;ReadPosRankSum=1.672;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2679,303,0 chrXIII 106249 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=160;Dels=0.00;FS=7.360;HaplotypeScore=9.5255;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.537;QD=23.46;ReadPosRankSum=2.418;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3753,429,0 chrXIII 106330 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3815,435,0 chrXIII 106450 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.88;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3404,396,0 chrXIII 106486 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.985;DP=196;Dels=0.00;FS=8.109;HaplotypeScore=16.6125;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.115;QD=18.82;ReadPosRankSum=2.869;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:4,191:196:99:3689,420,0 chrXIII 106672 . G C 2460 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.2691;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.33;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2493,282,0 chrXIII 106723 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.60;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2189,246,0 chrXIII 106741 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=2.953;HaplotypeScore=6.2739;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.615;QD=21.64;ReadPosRankSum=2.321;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2543,288,0 chrXIII 106831 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.74;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3055,330,0 chrXIII 107434 . T C 2844 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.12;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2877,330,0 chrXIII 107914 . C T 6016.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6016,649,0 chrXIII 107957 . C T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.9638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4585,501,0 chrXIII 108509 . A C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.253;QD=20.02;ReadPosRankSum=1.676;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2535,300,0 chrXIII 108622 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=147;Dels=0.01;FS=2.868;HaplotypeScore=18.2085;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.704;QD=20.09;ReadPosRankSum=2.382;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2986,339,0 chrXIII 109015 . G A 5046.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.7975;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.83;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5046,546,0 chrXIII 109858 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=19.88;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2856,318,0 chrXIII 109860 . C A 3008 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=21.33;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3041,324,0 chrXIII 110039 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.37;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1931,219,0 chrXIII 110068 . G A 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.287;DP=109;Dels=0.00;FS=6.225;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=-0.048;QD=18.26;ReadPosRankSum=-1.541;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2023,209,0 chrXIII 110077 . A G 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.071;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;MQRankSum=-1.251;QD=15.85;ReadPosRankSum=2.366;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1888,216,0 chrXIII 110102 . T C 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=4.393;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-1.102;QD=14.93;ReadPosRankSum=1.703;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:1855,213,0 chrXIII 110109 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=15.90;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2036,225,0 chrXIII 110245 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.47;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3719,399,0 chrXIII 110521 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=147;Dels=0.00;FS=8.251;HaplotypeScore=15.6733;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.555;QD=21.69;ReadPosRankSum=2.347;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,142:147:99:3222,366,0 chrXIII 110807 . T C 2224 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.59;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2257,252,0 chrXIII 112670 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.461;QD=23.05;ReadPosRankSum=1.674;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4149,465,0 chrXIII 113641 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=22.58;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2855,324,0 chrXIII 113729 . G A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4023,432,0 chrXIII 113864 . T C 2903 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2936,330,0 chrXIII 114297 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=2.933;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.435;QD=19.76;ReadPosRankSum=2.373;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3215,372,0 chrXIII 114304 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.766;QD=19.90;ReadPosRankSum=1.711;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3303,372,0 chrXIII 114553 . C T 6010.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.12;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6010,660,0 chrXIII 114963 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=19.3865;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.01;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4005,432,0 chrXIII 115000 . C T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4227,459,0 chrXIII 115183 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.75;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3435,384,0 chrXIII 115244 . G T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.24;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3425,378,0 chrXIII 115801 . G A 5154.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.3944;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.43;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5154,567,0 chrXIII 115959 . C T 5954.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.64;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5954,654,0 chrXIII 116022 . G A 5735.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.4752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5735,633,0 chrXIII 116112 . A G 4895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=19.2929;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.870;QD=19.98;ReadPosRankSum=1.689;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,240:245:99:4895,567,0 chrXIII 116296 . G A 4647.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.9786;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.13;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4647,504,0 chrXIII 116958 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.53;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3436,384,0 chrXIII 117057 . T C 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-1.139;QD=22.57;ReadPosRankSum=1.708;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3318,378,0 chrXIII 117105 . T G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=144;Dels=0.00;FS=6.048;HaplotypeScore=9.2127;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.050;QD=20.24;ReadPosRankSum=2.951;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,139:144:99:2947,330,0 chrXIII 117111 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.3027;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=19.68;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3005,330,0 chrXIII 117173 . A C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.66;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3396,396,0 chrXIII 117174 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=3.516;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.704;QD=20.02;ReadPosRankSum=1.561;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3643,405,0 chrXIII 117651 . A G 4609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=208;Dels=0.00;FS=9.084;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.898;QD=22.16;ReadPosRankSum=3.418;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:4,203:208:99:4609,534,0 chrXIII 118891 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.07;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2017,222,0 chrXIII 119596 . G C 4117.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.11;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4117,483,0 chrXIII 120032 . A G 1252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.119;QD=21.59;ReadPosRankSum=1.673;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1285,144,0 chrXIII 120033 . C A 1264 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=22.18;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1297,144,0 chrXIII 120332 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.72;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3953,447,0 chrXIII 120494 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3525,399,0 chrXIII 120797 . G A 6160.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=11.5436;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.00;SB=-3.458e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6160,681,0 chrXIII 121341 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.6770;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.64;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2886,318,0 chrXIII 121594 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.01;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3186,345,0 chrXIII 121637 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.32;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3040,336,0 chrXIII 121671 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.34;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,131:136:99:3071,339,0 chrXIII 121693 . G A 2779 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.43;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2812,312,0 chrXIII 121696 . C G 2815 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.17;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2848,318,0 chrXIII 121780 . T C 3026 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.77;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3059,345,0 chrXIII 121817 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=143;Dels=0.00;FS=5.328;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.291;QD=23.37;ReadPosRankSum=2.936;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3342,378,0 chrXIII 121847 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.48;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3225,372,0 chrXIII 121931 . T G 2556 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0992;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.45;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2589,300,0 chrXIII 121951 . T C 2283 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.68;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2316,270,0 chrXIII 121965 . T C 2395 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.47;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2428,276,0 chrXIII 122094 . G T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.28;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3860,417,0 chrXIII 122176 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=139;Dels=0.00;FS=11.426;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.277;QD=19.09;ReadPosRankSum=2.949;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:2687,309,0 chrXIII 122193 . A G 3021 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.14;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3054,354,0 chrXIII 122298 . G T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.13;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3463,390,0 chrXIII 122317 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.01;FS=0.000;HaplotypeScore=8.6774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.78;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4259,459,0 chrXIII 122419 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2351;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.48;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3212,363,0 chrXIII 122798 . G C 3052 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=18.28;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3085,363,0 chrXIII 122856 . A T 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=157;Dels=0.00;FS=9.005;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.070;QD=22.22;ReadPosRankSum=2.418;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3488,381,0 chrXIII 122980 . T C 2850 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3732;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.44;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2883,324,0 chrXIII 123044 . G A 2347 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.34;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2380,258,0 chrXIII 123833 . G A 4303.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4303,465,0 chrXIII 124283 . C G 4148.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.14;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:4148,480,0 chrXIII 124309 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=164;Dels=0.00;FS=9.273;HaplotypeScore=6.1347;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.178;QD=21.98;ReadPosRankSum=2.859;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3605,408,0 chrXIII 124455 . T C 2092 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2125,240,0 chrXIII 124777 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2506,276,0 chrXIII 125244 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.236;QD=22.46;ReadPosRankSum=2.392;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,170:175:99:3931,447,0 chrXIII 125874 . T C 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=194;Dels=0.00;FS=3.101;HaplotypeScore=6.0540;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.696;QD=20.95;ReadPosRankSum=1.714;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4064,462,0 chrXIII 125883 . A T 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=207;Dels=0.00;FS=3.031;HaplotypeScore=10.5643;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-1.145;QD=19.67;ReadPosRankSum=2.390;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4071,456,0 chrXIII 126422 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.30;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3724,426,0 chrXIII 126625 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.78;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3235,360,0 chrXIII 126663 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3124,339,0 chrXIII 127039 . A T 4761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.6154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.778;QD=22.89;ReadPosRankSum=1.715;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4761,534,0 chrXIII 127093 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.255;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.7618;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.050;QD=21.28;ReadPosRankSum=1.263;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4447,522,0 chrXIII 128432 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.0198;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.119;QD=19.83;ReadPosRankSum=1.686;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4481,513,0 chrXIII 128498 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3379,375,0 chrXIII 128764 . T C 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=132;Dels=0.00;FS=9.334;HaplotypeScore=6.6026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.451;QD=22.29;ReadPosRankSum=2.947;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2975,336,0 chrXIII 128877 . A G 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=169;Dels=0.00;FS=6.309;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=2.101;QD=21.35;ReadPosRankSum=2.421;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3608,411,0 chrXIII 129009 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.83;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4122,444,0 chrXIII 129400 . T G 4786.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.9402;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=22.47;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4786,546,0 chrXIII 129557 . C G 1588.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;DP=268;Dels=0.00;FS=86.706;HaplotypeScore=263.1712;MLEAC=1;MLEAF=0.500;MQ=40.11;MQ0=0;MQRankSum=-0.797;QD=5.93;ReadPosRankSum=-3.849;SB=-8.740e+02 GT:AD:DP:GQ:PL 0/1:114,153:268:99:1618,0,628 chrXIII 129558 . T G 1560.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.683;DP=269;Dels=0.00;FS=74.007;HaplotypeScore=262.3825;MLEAC=1;MLEAF=0.500;MQ=40.20;MQ0=0;MQRankSum=-3.230;QD=5.80;ReadPosRankSum=-3.002;SB=-9.060e+02 GT:AD:DP:GQ:PL 0/1:120,143:269:99:1590,0,624 chrXIII 129573 . A G 1093.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.709;DP=231;Dels=0.00;FS=49.378;HaplotypeScore=3.3527;MLEAC=1;MLEAF=0.500;MQ=39.62;MQ0=0;MQRankSum=-7.173;QD=4.73;ReadPosRankSum=-11.476;SB=-8.340e+02 GT:AD:DP:GQ:PL 0/1:114,117:231:99:1123,0,1170 chrXIII 129576 . A G 1366.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.265;DP=236;Dels=0.00;FS=54.060;HaplotypeScore=3.4307;MLEAC=1;MLEAF=0.500;MQ=40.59;MQ0=0;MQRankSum=4.687;QD=5.79;ReadPosRankSum=13.247;SB=-5.800e+02 GT:AD:DP:GQ:PL 0/1:117,118:236:99:1396,0,1149 chrXIII 129738 . C G 2340 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.27;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2373,267,0 chrXIII 129836 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.46;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2436,276,0 chrXIII 129941 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.637;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.801;QD=22.77;ReadPosRankSum=1.680;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3084,354,0 chrXIII 130061 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=22.78;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2675,294,0 chrXIII 130073 . T C 2197 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=21.97;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2230,249,0 chrXIII 130097 . T C 1277 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=20.60;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1310,150,0 chrXIII 130721 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3732;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.75;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3095,357,0 chrXIII 130922 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8969;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.84;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4268,465,0 chrXIII 131101 . C T 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.1148;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=2.138;QD=21.86;ReadPosRankSum=0.472;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:4854,496,0 chrXIII 131349 . G T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.31;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3614,396,0 chrXIII 131365 . T A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.36;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3653,399,0 chrXIII 131423 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=187;Dels=0.00;FS=2.979;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.138;QD=19.50;ReadPosRankSum=2.397;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3646,423,0 chrXIII 131599 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.08;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3647,408,0 chrXIII 131647 . G C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.95;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3446,390,0 chrXIII 131804 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.172;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.291;QD=23.14;ReadPosRankSum=1.707;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3227,366,0 chrXIII 131917 . G T 3213.98 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=22.96;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3247,351,0 chrXIII 131924 . A G 2544 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.56;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2577,291,0 chrXIII 131925 . A G 2528 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=120;Dels=0.00;FS=2.598;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.181;QD=21.07;ReadPosRankSum=2.906;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:3,114:120:99:2561,288,0 chrXIII 131926 . T A 2624 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=4.449;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.044;QD=22.43;ReadPosRankSum=1.703;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2657,288,0 chrXIII 132023 . A C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=123;Dels=0.00;FS=3.027;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.030;QD=20.98;ReadPosRankSum=2.329;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2614,294,0 chrXIII 132039 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.05;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2854,309,0 chrXIII 132061 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=132;Dels=0.00;FS=3.018;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.512;QD=19.90;ReadPosRankSum=2.412;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2660,297,0 chrXIII 132328 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.75;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3480,405,0 chrXIII 132350 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.52;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3828,414,0 chrXIII 132409 . A G 2937 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.45;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2970,342,0 chrXIII 132417 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=151;Dels=0.00;FS=3.465;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.310;QD=19.97;ReadPosRankSum=1.709;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3048,348,0 chrXIII 132424 . A T 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.779;QD=19.27;ReadPosRankSum=1.710;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3116,360,0 chrXIII 132552 . C T 5190.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.7442;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.99;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5190,567,0 chrXIII 132728 . C T 3805.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.91;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3805,411,0 chrXIII 132730 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.46;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3522,411,0 chrXIII 132856 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2644,285,0 chrXIII 133001 . A T 2589 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.12;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2622,300,0 chrXIII 133212 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=124;Dels=0.01;FS=7.289;HaplotypeScore=19.1881;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=0.776;QD=22.40;ReadPosRankSum=2.409;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2811,321,0 chrXIII 133714 . A G 4431.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.71;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4431,516,0 chrXIII 133858 . T C 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.8551;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.231;QD=22.37;ReadPosRankSum=1.686;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5123,602,0 chrXIII 134361 . A G 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=207;Dels=0.00;FS=8.613;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.704;QD=21.89;ReadPosRankSum=2.425;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,202:207:99:4532,519,0 chrXIII 135169 . A G 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.856;QD=20.98;ReadPosRankSum=2.738;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2530,288,0 chrXIII 135233 . C A 2119 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1514;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.19;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2152,234,0 chrXIII 135252 . T C 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.495;DP=83;Dels=0.00;FS=13.845;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.939;QD=18.58;ReadPosRankSum=2.914;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:3,79:83:99:1575,180,0 chrXIII 135343 . T C 3158 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.93;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3191,363,0 chrXIII 135357 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.24;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3271,372,0 chrXIII 135387 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.50;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2893,312,0 chrXIII 135459 . T C 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.306;QD=22.58;ReadPosRankSum=1.645;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2720,312,0 chrXIII 135878 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=148;Dels=0.00;FS=6.741;HaplotypeScore=5.7160;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.568;QD=23.00;ReadPosRankSum=2.382;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,143:148:99:3404,390,0 chrXIII 136036 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=168;Dels=0.00;FS=2.577;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.252;QD=22.20;ReadPosRankSum=2.958;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3729,426,0 chrXIII 136702 . T G 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.380;QD=22.64;ReadPosRankSum=2.417;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:5049,596,0 chrXIII 136894 . A G 6076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=279;Dels=0.00;FS=2.777;HaplotypeScore=19.6555;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.456;QD=21.78;ReadPosRankSum=2.370;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:2,275:279:99:6076,693,0 chrXIII 137116 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=5.397;HaplotypeScore=4.9985;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.546;QD=22.55;ReadPosRankSum=1.709;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3360,387,0 chrXIII 137475 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.06;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3734,405,0 chrXIII 137524 . T C 2991 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.83;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3024,348,0 chrXIII 137694 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=25.09;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4265,459,0 chrXIII 137717 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.22;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3623,396,0 chrXIII 137720 . G C 3506.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.33;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3506,393,0 chrXIII 137768 . C A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.8997;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.46;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3704,411,0 chrXIII 137864 . C G 3656.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.31;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,173:180:99:3656,414,0 chrXIII 137879 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.16;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3766,414,0 chrXIII 138042 . A G 5301.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.56;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5301,591,0 chrXIII 138053 . C G 4480.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.54;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4480,528,0 chrXIII 138142 . A G 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.283;QD=22.18;ReadPosRankSum=1.714;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4302,480,0 chrXIII 138155 . A G 4786.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.06;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4786,537,0 chrXIII 138467 . A G 4846.01 SnpCluster AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.44;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4846,552,0 chrXIII 138473 . C T 4709.01 SnpCluster AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.02;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4709,525,0 chrXIII 138474 . C A 4729.01 SnpCluster AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.02;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4729,531,0 chrXIII 138521 . C T 4963.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.31;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:4963,535,0 chrXIII 138760 . A G 4440.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.00;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4440,504,0 chrXIII 139108 . C T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.17;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4495,498,0 chrXIII 139180 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3756;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.75;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3959,435,0 chrXIII 139225 . A G 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.7035;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.050;QD=22.10;ReadPosRankSum=1.715;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4596,519,0 chrXIII 139255 . G A 5208.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.5042;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.84;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,223:228:99:5208,588,0 chrXIII 139387 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.78;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3213,360,0 chrXIII 139583 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.85;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3092,351,0 chrXIII 139632 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.32;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2868,318,0 chrXIII 139699 . A G 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.127;QD=20.62;ReadPosRankSum=1.698;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2157,252,0 chrXIII 140328 . G A 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.905;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6922;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.853;QD=21.51;ReadPosRankSum=-0.044;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3045,330,0 chrXIII 140517 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=4.555;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.666;QD=22.63;ReadPosRankSum=1.600;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3621,429,0 chrXIII 140595 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=146;Dels=0.00;FS=2.974;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.362;QD=20.10;ReadPosRankSum=2.399;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2968,336,0 chrXIII 140631 . G A 3894.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.64;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3894,432,0 chrXIII 140661 . A G 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=201;Dels=0.00;FS=6.066;HaplotypeScore=12.1336;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.082;QD=20.13;ReadPosRankSum=2.933;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:3,193:201:99:4046,468,0 chrXIII 140935 . A G 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.182;QD=21.59;ReadPosRankSum=1.671;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:4966,587,0 chrXIII 140970 . A G 4656.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.2709;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.56;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4656,528,0 chrXIII 140996 . G A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.14;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4186,474,0 chrXIII 141291 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4282,486,0 chrXIII 141456 . T C 2579 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2612,306,0 chrXIII 141548 . A G 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.852;QD=20.24;ReadPosRankSum=2.397;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1936,225,0 chrXIII 141627 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.41;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1789,198,0 chrXIII 141877 . T C 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.732;QD=23.96;ReadPosRankSum=1.640;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2740,309,0 chrXIII 141894 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=11.2726;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.76;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2537,288,0 chrXIII 142173 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=187;Dels=0.00;FS=7.855;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.834;QD=20.57;ReadPosRankSum=2.423;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3846,438,0 chrXIII 142186 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=19.22;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3787,435,0 chrXIII 142190 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=-1.539;QD=18.81;ReadPosRankSum=1.714;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:3725,426,0 chrXIII 142206 . T G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=18.87;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3661,408,0 chrXIII 142395 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=23.45;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3283,363,0 chrXIII 142824 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.08;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4224,465,0 chrXIII 142984 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.2680;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.94;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3993,453,0 chrXIII 143070 . C A 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.316;DP=241;Dels=0.00;FS=14.108;HaplotypeScore=451.4443;MLEAC=1;MLEAF=0.500;MQ=49.01;MQ0=0;MQRankSum=2.985;QD=1.09;ReadPosRankSum=-4.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:208,28:241:99:292,0,829 chrXIII 143134 . G C 3035 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.73;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3068,363,0 chrXIII 143364 . A T 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=2.930;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.679;QD=24.17;ReadPosRankSum=2.407;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2813,303,0 chrXIII 143886 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=3.499;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.946;QD=23.09;ReadPosRankSum=1.683;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3279,378,0 chrXIII 143958 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.85;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3300,369,0 chrXIII 144507 . C T 6574.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.13;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:6574,732,0 chrXIII 144592 . A G 5758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;DP=252;Dels=0.00;FS=5.205;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.045;QD=22.85;ReadPosRankSum=3.412;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:4,248:252:99:5758,654,0 chrXIII 144642 . G A 6014.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.40;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:6014,681,0 chrXIII 144771 . T C 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.626;QD=21.20;ReadPosRankSum=1.690;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:3582,420,0 chrXIII 144786 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.83;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3291,375,0 chrXIII 145063 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=182;Dels=0.00;FS=3.015;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.074;QD=23.58;ReadPosRankSum=2.423;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4292,480,0 chrXIII 145154 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.43;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3141,348,0 chrXIII 145184 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.22;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3106,345,0 chrXIII 145262 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.29;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3364,381,0 chrXIII 145373 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=9.445;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.451;QD=23.02;ReadPosRankSum=2.394;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4097,486,0 chrXIII 145742 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.80;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3498,384,0 chrXIII 145925 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.07;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2536,273,0 chrXIII 146198 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.829;QD=22.91;ReadPosRankSum=2.381;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2507,285,0 chrXIII 146979 . A G 4550.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=23.4274;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.64;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4550,516,0 chrXIII 147350 . T C 1154 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.04;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1187,138,0 chrXIII 147583 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.09;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3756,435,0 chrXIII 147676 . T C 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=206;Dels=0.00;FS=3.319;HaplotypeScore=18.7180;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.036;QD=19.83;ReadPosRankSum=1.715;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4084,453,0 chrXIII 147864 . C T 4770.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.1274;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.83;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4770,519,0 chrXIII 147927 . T C 6087.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.77;SB=-3.419e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:6087,693,0 chrXIII 148638 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0292;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.55;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2834,315,0 chrXIII 148721 . C T 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.456;QD=19.49;ReadPosRankSum=1.337;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2294,249,0 chrXIII 148937 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.11;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1622,183,0 chrXIII 149089 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2575,291,0 chrXIII 149567 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=185;Dels=0.00;FS=5.726;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.181;QD=18.01;ReadPosRankSum=2.962;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3331,384,0 chrXIII 149583 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.31;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3314,381,0 chrXIII 149883 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.43;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3196,345,0 chrXIII 150027 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2257,246,0 chrXIII 150108 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3737,405,0 chrXIII 150273 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3818,435,0 chrXIII 150312 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3951,435,0 chrXIII 150402 . G C 2901 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.02;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2934,330,0 chrXIII 150480 . A T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.83;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3722,423,0 chrXIII 150534 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=146;Dels=0.00;FS=3.070;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.593;QD=20.47;ReadPosRankSum=1.661;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3021,348,0 chrXIII 150893 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=2.771;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.991;QD=19.68;ReadPosRankSum=2.419;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3182,363,0 chrXIII 150900 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.78;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3094,345,0 chrXIII 150999 . A T 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.630;QD=20.41;ReadPosRankSum=1.687;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3176,351,0 chrXIII 151003 . T C 2915 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.43;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2948,336,0 chrXIII 151059 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.67;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1924,207,0 chrXIII 151065 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=16.29;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1727,195,0 chrXIII 151149 . A G 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.658;QD=21.65;ReadPosRankSum=1.697;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2220,249,0 chrXIII 151185 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.13;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2716,309,0 chrXIII 151772 . T C 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.464;QD=22.22;ReadPosRankSum=1.670;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2522,288,0 chrXIII 152179 . C T 4834.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.5405;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.17;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4834,525,0 chrXIII 152386 . A C 2606 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4317;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=17.26;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2639,303,0 chrXIII 152431 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.045;DP=210;Dels=0.00;FS=13.582;HaplotypeScore=17.4235;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.188;QD=14.95;ReadPosRankSum=4.134;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:6,203:210:99:3173,354,0 chrXIII 152476 . T G 4081.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.0845;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.48;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4081,459,0 chrXIII 152766 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=180;Dels=0.00;FS=6.501;HaplotypeScore=10.8200;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.978;QD=22.66;ReadPosRankSum=2.408;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:4079,462,0 chrXIII 152885 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.636;QD=23.09;ReadPosRankSum=1.707;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3242,378,0 chrXIII 153063 . T C 2982 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.09;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3015,345,0 chrXIII 153107 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2273,258,0 chrXIII 153486 . A T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.6629;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.79;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4119,465,0 chrXIII 153576 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=3.707;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.706;QD=20.67;ReadPosRankSum=1.716;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4505,531,0 chrXIII 153582 . T C 4695.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.64;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4695,531,0 chrXIII 154077 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=137;Dels=0.00;FS=6.107;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.326;QD=18.97;ReadPosRankSum=2.815;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2632,303,0 chrXIII 154359 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.75;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3708,432,0 chrXIII 154578 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.712;QD=21.57;ReadPosRankSum=1.713;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3882,435,0 chrXIII 154884 . A G 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=166;Dels=0.00;FS=2.807;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.802;QD=22.07;ReadPosRankSum=2.390;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3663,417,0 chrXIII 154896 . G C 3409.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.99;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3409,378,0 chrXIII 155379 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=157;Dels=0.00;FS=4.269;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.442;QD=22.69;ReadPosRankSum=1.710;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3563,399,0 chrXIII 155649 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.04;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3986,429,0 chrXIII 155650 . G C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.62;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3783,429,0 chrXIII 155781 . C A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.54;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4080,450,0 chrXIII 155926 . G A 4355.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.99;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4355,468,0 chrXIII 155934 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.09;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4038,459,0 chrXIII 156687 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.44;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3430,375,0 chrXIII 157233 . G T 4925.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.7289;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.80;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4925,537,0 chrXIII 157287 . A C 5093.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.1012;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.36;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5093,573,0 chrXIII 158385 . C T 666 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=15.86;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:699,78,0 chrXIII 158463 . A C 1224 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.40;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1257,147,0 chrXIII 158538 . T C 667 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.70;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:81:700,81,0 chrXIII 158970 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.66;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2869,336,0 chrXIII 158997 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=18.46;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2931,339,0 chrXIII 159018 . T A 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=140;Dels=0.00;FS=10.960;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.342;QD=18.75;ReadPosRankSum=2.309;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2658,288,0 chrXIII 159039 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=16.15;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1890,204,0 chrXIII 159055 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=15.77;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1563,174,0 chrXIII 159212 . A G 1743 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.00;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1776,204,0 chrXIII 159423 . G C 3344.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.86;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3344,378,0 chrXIII 159727 . T C 1844 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=19.01;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1877,210,0 chrXIII 159728 . T C 1853 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=19.51;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1886,210,0 chrXIII 159757 . T G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.569;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.269;QD=18.03;ReadPosRankSum=1.672;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2125,243,0 chrXIII 159772 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=131;Dels=0.00;FS=7.137;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.562;QD=16.64;ReadPosRankSum=2.335;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2213,246,0 chrXIII 159850 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=568.3295;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=12.56;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1402,162,0 chrXIII 159905 . T C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=108;Dels=0.00;FS=2.599;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-1.832;QD=15.02;ReadPosRankSum=2.356;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:3,105:108:99:1655,192,0 chrXIII 159986 . A G 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=3.768;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.092;QD=21.43;ReadPosRankSum=1.709;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3248,372,0 chrXIII 160455 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=205;Dels=0.00;FS=2.825;HaplotypeScore=14.7462;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.431;QD=21.28;ReadPosRankSum=2.402;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4362,504,0 chrXIII 160611 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=160;Dels=0.00;FS=13.140;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.384;QD=19.84;ReadPosRankSum=2.956;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3208,366,0 chrXIII 160812 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.10;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3834,423,0 chrXIII 160953 . C G 3442.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3442,399,0 chrXIII 161385 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.66;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3893,432,0 chrXIII 161620 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=185;Dels=0.00;FS=2.977;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.034;QD=19.97;ReadPosRankSum=2.409;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3695,423,0 chrXIII 162309 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3915;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.65;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3855,435,0 chrXIII 162461 . A G 7619.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.74;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,320:321:99:7619,861,0 chrXIII 163055 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=23.23;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3415,372,0 chrXIII 163283 . T C 2508 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.19;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2541,291,0 chrXIII 163898 . C T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.3212;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.92;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4584,516,0 chrXIII 163975 . T C 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.5590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.548;QD=22.11;ReadPosRankSum=1.712;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,168:175:99:3870,453,0 chrXIII 164287 . A C 1901 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.47;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1934,222,0 chrXIII 164304 . G A 2124 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.34;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2157,231,0 chrXIII 164532 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.74;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1742,198,0 chrXIII 164648 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=108;Dels=0.04;FS=0.000;HaplotypeScore=14.9884;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.566;QD=21.89;ReadPosRankSum=1.666;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2397,270,0 chrXIII 164837 . C T 2834 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.63;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2867,309,0 chrXIII 164846 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=3.590;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.054;QD=20.66;ReadPosRankSum=1.678;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2698,306,0 chrXIII 164930 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.475;QD=22.32;ReadPosRankSum=1.704;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2823,324,0 chrXIII 165032 . G T 3140 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.43;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3173,348,0 chrXIII 165083 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.19;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3233,369,0 chrXIII 165599 . T C 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.183;QD=24.61;ReadPosRankSum=1.610;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2125,246,0 chrXIII 165887 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.5829;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.79;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4242,462,0 chrXIII 165995 . G A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4512,507,0 chrXIII 166205 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=143;Dels=0.00;FS=2.979;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.435;QD=22.59;ReadPosRankSum=2.398;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3264,366,0 chrXIII 166295 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=170;Dels=0.00;FS=7.744;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.672;QD=21.49;ReadPosRankSum=2.406;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3653,420,0 chrXIII 166364 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=162;Dels=0.00;FS=7.396;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.755;QD=21.30;ReadPosRankSum=2.327;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3451,396,0 chrXIII 166589 . A C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=2.992;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.279;QD=22.72;ReadPosRankSum=2.386;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3521,411,0 chrXIII 166619 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0348;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.37;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4362,474,0 chrXIII 167004 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.2795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4016,438,0 chrXIII 167169 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0985;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.70;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3975,435,0 chrXIII 167606 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.02;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.04;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3259,357,0 chrXIII 167607 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.02;FS=0.000;HaplotypeScore=13.5245;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.84;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,157:163:99:3314,363,0 chrXIII 167906 . G C 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.3108;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.828;QD=20.36;ReadPosRankSum=-0.628;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4256,480,0 chrXIII 167908 . C T 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.5221;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.416;QD=21.37;ReadPosRankSum=-0.450;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4445,483,0 chrXIII 168084 . C T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.20;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3859,429,0 chrXIII 168139 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=22.11;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3150,348,0 chrXIII 168166 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=22.59;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2676,294,0 chrXIII 168229 . T C 2698 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=22.86;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2731,312,0 chrXIII 168709 . T C 68.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;MQRankSum=-0.817;QD=1.56;ReadPosRankSum=2.338;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,42:44:12:101,12,0 chrXIII 168732 . C A 235 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=4.12;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,57:57:30:268,30,0 chrXIII 168733 . G C 220 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=3.86;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,57:57:30:253,30,0 chrXIII 168744 . T C 199.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.016;QD=3.16;ReadPosRankSum=2.889;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:3,60:63:27:232,27,0 chrXIII 168749 . T G 335 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.197;QD=4.86;ReadPosRankSum=2.379;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,67:69:42:368,42,0 chrXIII 168759 . A C 464 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=6.93;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:57:497,57,0 chrXIII 168760 . C A 484 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=7.22;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:57:517,57,0 chrXIII 168773 . T C 633 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=8.44;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:75:666,75,0 chrXIII 168778 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=10.19;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:87:797,87,0 chrXIII 168838 . C T 1173 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=4;QD=18.92;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1206,129,0 chrXIII 168948 . G T 2155 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=22.93;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2188,234,0 chrXIII 169254 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.45;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2472,285,0 chrXIII 169412 . T G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=155;Dels=0.00;FS=4.184;HaplotypeScore=9.8616;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.820;QD=19.94;ReadPosRankSum=1.709;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,151:155:99:3123,354,0 chrXIII 169479 . A G 3022 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.28;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3055,354,0 chrXIII 169501 . A T 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=152;Dels=0.00;FS=42.814;HaplotypeScore=3.9694;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.522;QD=14.37;ReadPosRankSum=3.923;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:23,129:152:99:2218,243,0 chrXIII 169521 . G A 2160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.657;DP=143;Dels=0.00;FS=20.373;HaplotypeScore=13.5526;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.388;QD=15.10;ReadPosRankSum=3.348;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:4,138:143:99:2193,252,0 chrXIII 169962 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;MQRankSum=0.499;QD=24.08;ReadPosRankSum=1.673;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2874,330,0 chrXIII 170004 . T A 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.629;QD=23.75;ReadPosRankSum=2.314;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3073,333,0 chrXIII 170099 . T A 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.403;DP=185;Dels=0.00;FS=2.399;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.071;QD=25.92;ReadPosRankSum=3.413;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:4795,522,0 chrXIII 170393 . C T 5159.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.3420;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.56;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5159,570,0 chrXIII 170566 . G A 4503.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.6419;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.21;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4503,498,0 chrXIII 170932 . T C 4208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=220;Dels=0.00;FS=9.395;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.069;QD=19.13;ReadPosRankSum=2.840;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:3,216:220:99:4208,489,0 chrXIII 171523 . A G 3115 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.7342;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3148,363,0 chrXIII 171785 . T C 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;DP=270;Dels=0.00;FS=19.530;HaplotypeScore=23.0432;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.156;QD=19.72;ReadPosRankSum=3.826;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:5,261:270:99:5324,591,0 chrXIII 171887 . C T 5241.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.5374;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.19;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5241,565,0 chrXIII 171896 . A C 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.749;QD=20.94;ReadPosRankSum=1.700;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4543,531,0 chrXIII 172118 . G T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.46;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3744,429,0 chrXIII 172478 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.1580;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.34;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3944,438,0 chrXIII 172523 . C A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.2045;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.49;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3943,429,0 chrXIII 172589 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.36;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3667,420,0 chrXIII 172679 . G C 4167.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.48;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4167,477,0 chrXIII 172925 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.60;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3887,423,0 chrXIII 173124 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0824;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.50;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3736,420,0 chrXIII 173282 . T C 5503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=239;Dels=0.00;FS=2.914;HaplotypeScore=16.6403;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.833;QD=23.03;ReadPosRankSum=2.429;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:5503,615,0 chrXIII 173523 . C T 5221.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.41;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5221,562,0 chrXIII 173678 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3646,402,0 chrXIII 173888 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=151;Dels=0.00;FS=6.344;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.936;QD=21.77;ReadPosRankSum=2.352;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3287,375,0 chrXIII 173987 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1915,207,0 chrXIII 174263 . T A 2706 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.53;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2739,300,0 chrXIII 174577 . A G 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=212;Dels=0.00;FS=6.550;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.214;QD=19.82;ReadPosRankSum=2.403;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4201,492,0 chrXIII 174640 . T C 4121.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.2724;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.13;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4121,462,0 chrXIII 174739 . T C 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=197;Dels=0.00;FS=3.740;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.518;QD=22.00;ReadPosRankSum=1.714;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:4334,498,0 chrXIII 174798 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.24;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,181:187:99:4345,480,0 chrXIII 174980 . T A 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.2708;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.599;QD=21.03;ReadPosRankSum=1.134;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3639,396,0 chrXIII 174991 . T C 3179 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.27;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3212,372,0 chrXIII 175074 . G C 2903 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.02;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2936,333,0 chrXIII 175129 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.3205;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.00;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3276,378,0 chrXIII 175339 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.261;QD=23.08;ReadPosRankSum=1.714;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4408,495,0 chrXIII 175405 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.80;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3899,435,0 chrXIII 175421 . A G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=183;Dels=0.00;FS=3.182;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.852;QD=21.89;ReadPosRankSum=1.713;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:4006,456,0 chrXIII 175545 . T C 4983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=3.091;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.208;QD=22.75;ReadPosRankSum=1.684;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:4983,567,0 chrXIII 175576 . A T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5905;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.29;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4258,471,0 chrXIII 175601 . T A 4527.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.86;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4527,492,0 chrXIII 175615 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=9.0416;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.52;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4803,528,0 chrXIII 175682 . C T 5016.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.1019;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=23.12;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5016,549,0 chrXIII 175759 . A G 4830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=225;Dels=0.00;FS=5.986;HaplotypeScore=7.4863;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.415;QD=21.47;ReadPosRankSum=2.897;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:4830,549,0 chrXIII 175777 . A G 5287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=247;Dels=0.00;FS=2.959;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.987;QD=21.40;ReadPosRankSum=2.419;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:2,243:247:99:5287,597,0 chrXIII 175883 . A T 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;MQRankSum=-0.884;QD=11.96;ReadPosRankSum=1.697;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:2378,261,0 chrXIII 176006 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.30;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3450,375,0 chrXIII 176043 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=171;Dels=0.00;FS=8.127;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-1.539;QD=20.63;ReadPosRankSum=2.363;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3527,402,0 chrXIII 176077 . T A 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=186;Dels=0.00;FS=3.153;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.112;QD=22.52;ReadPosRankSum=1.713;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4188,465,0 chrXIII 176141 . C T 4261.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=24.77;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4261,456,0 chrXIII 176260 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6374;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.23;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4241,474,0 chrXIII 176569 . T C 5070.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5070,582,0 chrXIII 176764 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=179;Dels=0.00;FS=8.744;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.700;QD=21.31;ReadPosRankSum=2.408;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3815,447,0 chrXIII 176818 . C A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3686,402,0 chrXIII 176890 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9214;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.16;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3224,360,0 chrXIII 176942 . A G 3182 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.89;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3215,366,0 chrXIII 177237 . T C 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=205;Dels=0.00;FS=5.231;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.924;QD=24.08;ReadPosRankSum=3.418;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:4,201:205:99:4936,552,0 chrXIII 177490 . G A 5464.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=18.3338;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.12;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5464,594,0 chrXIII 177595 . C T 5536.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.88;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5536,606,0 chrXIII 177745 . G T 4835.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.88;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4835,552,0 chrXIII 177778 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.09;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4302,462,0 chrXIII 177801 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=17.03;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3372,366,0 chrXIII 177805 . A T 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.240;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.946;QD=15.41;ReadPosRankSum=1.714;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3023,333,0 chrXIII 177833 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.07;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3755,408,0 chrXIII 177865 . A G 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=224;Dels=0.00;FS=14.912;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.090;QD=18.94;ReadPosRankSum=2.861;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:4243,480,0 chrXIII 178128 . A G 4666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.961;QD=20.38;ReadPosRankSum=1.717;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4666,528,0 chrXIII 178148 . G C 4166.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.20;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,211:217:99:4166,471,0 chrXIII 178152 . C A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.72;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4339,471,0 chrXIII 178203 . A G 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=244;Dels=0.00;FS=2.754;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.800;QD=18.98;ReadPosRankSum=2.389;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:4630,540,0 chrXIII 178570 . A T 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=175;Dels=0.00;FS=3.033;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.600;QD=23.42;ReadPosRankSum=2.393;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4099,444,0 chrXIII 178780 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8238;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.32;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3837,453,0 chrXIII 179112 . T A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.9188;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.89;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4715,510,0 chrXIII 179205 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.47;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3715,408,0 chrXIII 179265 . G C 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.653;QD=18.68;ReadPosRankSum=-0.363;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3153,372,0 chrXIII 179271 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=21.14;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3446,375,0 chrXIII 179346 . C T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.97;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3383,387,0 chrXIII 179439 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.24;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2729,297,0 chrXIII 179559 . T C 2124 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=21.90;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2157,252,0 chrXIII 179582 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.91;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2183,249,0 chrXIII 179588 . A G 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.702;QD=19.15;ReadPosRankSum=1.701;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2159,246,0 chrXIII 179677 . T A 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=74;Dels=0.00;FS=5.470;HaplotypeScore=5.2005;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-1.264;QD=17.51;ReadPosRankSum=1.217;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1329,144,0 chrXIII 179752 . G A 215.01 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=5.38;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:27:248,27,0 chrXIII 179886 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.46;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1156,123,0 chrXIII 179931 . A G 752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.928;DP=38;Dels=0.00;FS=3.079;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.098;QD=19.79;ReadPosRankSum=2.321;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:93:785,93,0 chrXIII 179979 . T C 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.128;QD=25.02;ReadPosRankSum=1.668;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1384,153,0 chrXIII 180040 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.743;QD=23.80;ReadPosRankSum=2.339;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2675,300,0 chrXIII 181117 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1674,192,0 chrXIII 181240 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=5.0034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1828,204,0 chrXIII 182183 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.30;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2163,243,0 chrXIII 182695 . A T 2060 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.89;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2093,228,0 chrXIII 182943 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.85;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2644,294,0 chrXIII 183006 . T C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.600;QD=22.13;ReadPosRankSum=1.699;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2335,267,0 chrXIII 183093 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.07;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3599,390,0 chrXIII 183111 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.80;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3132,345,0 chrXIII 183125 . A G 2951 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.21;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2984,339,0 chrXIII 183219 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.41;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1702,189,0 chrXIII 183574 . A T 188.03 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:221,24,0 chrXIII 183601 . A G 279 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=23.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:36:312,36,0 chrXIII 183799 . T C 481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=4.523;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-1.121;QD=14.15;ReadPosRankSum=1.631;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:60:514,60,0 chrXIII 183800 . A T 490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=4.301;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;MQRankSum=-0.842;QD=14.00;ReadPosRankSum=1.535;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:60:523,60,0 chrXIII 183815 . T C 415 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=14.31;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:51:448,51,0 chrXIII 183816 . A C 407 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=13.57;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:51:440,51,0 chrXIII 183824 . G T 431 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=14.37;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:54:464,54,0 chrXIII 183879 . G A 628 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=31.8948;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=16.53;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:661,75,0 chrXIII 183988 . T C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;MQRankSum=-0.791;QD=22.04;ReadPosRankSum=1.689;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1818,213,0 chrXIII 184061 . A G 1258 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;QD=23.30;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1291,147,0 chrXIII 184114 . T C 1719 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=21.22;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1752,201,0 chrXIII 184115 . G T 1769 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=21.84;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1802,201,0 chrXIII 184139 . G T 1426 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=18.52;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1459,165,0 chrXIII 190082 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=4;MQRankSum=0.742;QD=2.25;ReadPosRankSum=-0.742;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:5,6:11:6:56,6,0 chrXIII 190128 . G C 1191 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=13.23;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1224,135,0 chrXIII 190148 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.03;FS=0.000;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=17.05;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1806,201,0 chrXIII 190180 . T C 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=117;Dels=0.00;FS=2.587;HaplotypeScore=94.1244;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=-0.852;QD=18.15;ReadPosRankSum=2.940;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2156,243,0 chrXIII 190411 . C T 4600.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.08;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4600,501,0 chrXIII 190535 . C G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.54;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3813,435,0 chrXIII 190760 . A G 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=214;Dels=0.00;FS=3.286;HaplotypeScore=12.0318;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.043;QD=21.71;ReadPosRankSum=1.683;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4647,537,0 chrXIII 190786 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.63;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4412,498,0 chrXIII 191033 . A C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.1649;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.201;QD=21.26;ReadPosRankSum=1.672;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3657,426,0 chrXIII 191318 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.72;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2205,237,0 chrXIII 191452 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4765;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.151;QD=22.99;ReadPosRankSum=1.707;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3182,363,0 chrXIII 191569 . T C 3040 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7912;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3073,360,0 chrXIII 191995 . T A 69.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;DP=16;Dels=0.00;FS=25.611;HaplotypeScore=10.6439;MLEAC=1;MLEAF=0.500;MQ=49.98;MQ0=0;MQRankSum=2.850;QD=4.33;ReadPosRankSum=-0.546;SB=-2.215e+01 GT:AD:DP:GQ:PL 0/1:4,12:16:9:99,0,9 chrXIII 192045 . C T 751 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=17.88;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:87:784,87,0 chrXIII 192047 . C T 791 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=17.98;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:87:824,87,0 chrXIII 192110 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.44;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1744,195,0 chrXIII 192206 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=23.57;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2696,300,0 chrXIII 192291 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1699;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.25;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2795,309,0 chrXIII 192332 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.5365;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.21;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2698,303,0 chrXIII 192396 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.97;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3221,351,0 chrXIII 192414 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=0.109;QD=18.16;ReadPosRankSum=1.708;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2648,303,0 chrXIII 192432 . T C 2321 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=7.4544;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=16.12;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2354,267,0 chrXIII 192436 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=9.1771;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=15.74;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2237,252,0 chrXIII 192721 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.18;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1491,165,0 chrXIII 192991 . T C 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=178;Dels=0.00;FS=5.930;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.633;QD=24.56;ReadPosRankSum=2.859;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4371,498,0 chrXIII 193159 . A G 4183.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4183,474,0 chrXIII 194053 . A G 5015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=222;Dels=0.00;FS=3.023;HaplotypeScore=17.8388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.328;QD=22.59;ReadPosRankSum=2.394;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:5015,573,0 chrXIII 194107 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.5560;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.915;QD=21.48;ReadPosRankSum=1.683;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4576,525,0 chrXIII 194499 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3652,399,0 chrXIII 194821 . A C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=177;Dels=0.00;FS=9.483;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.778;QD=22.86;ReadPosRankSum=2.892;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:4046,459,0 chrXIII 195330 . C A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.0126;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.86;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3782,420,0 chrXIII 195572 . T C 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.718;QD=21.30;ReadPosRankSum=1.716;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:4772,549,0 chrXIII 195860 . A T 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=12.5899;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.277;QD=19.14;ReadPosRankSum=1.645;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2330,264,0 chrXIII 195938 . A G 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=1.569;QD=19.52;ReadPosRankSum=1.691;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1712,192,0 chrXIII 195968 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.03;FS=0.000;HaplotypeScore=41.1835;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=21.41;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2409,261,0 chrXIII 196000 . A C 2880 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=22.15;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2913,333,0 chrXIII 196031 . T A 2699 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=24.10;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2732,300,0 chrXIII 196033 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=22.85;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2546,288,0 chrXIII 196059 . T C 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;MQRankSum=0.590;QD=21.49;ReadPosRankSum=1.694;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2010,234,0 chrXIII 196123 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=3;QD=21.49;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1516,174,0 chrXIII 196322 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=6;Dels=0.00;FS=6.021;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=1;MQRankSum=0.727;QD=3.30;ReadPosRankSum=0.727;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,3:6:6:51,6,0 chrXIII 201962 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.528;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=2.85;MQ0=240;MQRankSum=2.192;QD=0.07;ReadPosRankSum=-1.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:255,3:259:6:49,6,0 chrXIII 202121 . T A 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.67;MQ0=188;MQRankSum=-1.875;QD=0.22;ReadPosRankSum=2.073;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:188,13:201:9:77,9,0 chrXIII 202122 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=6.03;MQ0=187;QD=0.24;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:184,14:201:9:80,9,0 chrXIII 202190 . C G 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DP=169;Dels=0.00;FS=60.110;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=20.69;MQ0=56;MQRankSum=4.905;QD=0.64;ReadPosRankSum=-6.625;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:107,60:169:99:138,0,298 chrXIII 202193 . A G 149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.382;DP=167;Dels=0.00;FS=52.986;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=48;MQRankSum=5.454;QD=0.89;ReadPosRankSum=-4.537;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:104,63:167:99:179,0,346 chrXIII 202206 . T C 256.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DP=164;Dels=0.00;FS=20.703;HaplotypeScore=7.5400;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=30;MQRankSum=3.780;QD=1.56;ReadPosRankSum=5.302;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:95,69:164:99:286,0,281 chrXIII 202207 . T A 308.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=169;Dels=0.00;FS=10.957;HaplotypeScore=7.5400;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=30;MQRankSum=3.278;QD=1.82;ReadPosRankSum=5.131;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:94,75:169:99:338,0,232 chrXIII 202222 . A C 1136 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=7.282;DP=140;Dels=0.00;FS=142.321;HaplotypeScore=23.0812;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=3;MQRankSum=6.637;QD=8.11;ReadPosRankSum=7.547;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:26,114:140:99:1169,132,0 chrXIII 202223 . T C 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370;DP=116;Dels=0.00;FS=27.891;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=33.01;MQ0=0;MQRankSum=1.308;QD=0.84;ReadPosRankSum=-5.009;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,30:116:99:128,0,818 chrXIII 202226 . G A 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.600;DP=117;Dels=0.00;FS=30.750;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=33.33;MQ0=0;MQRankSum=-1.535;QD=0.83;ReadPosRankSum=-6.056;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,30:117:99:127,0,855 chrXIII 202231 . C T 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.069;DP=119;Dels=0.00;FS=33.552;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=33.89;MQ0=0;MQRankSum=0.701;QD=0.76;ReadPosRankSum=-7.788;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,30:119:99:120,0,962 chrXIII 202482 . A G 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.080;DP=80;Dels=0.00;FS=2.682;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.139;QD=21.57;ReadPosRankSum=2.357;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1759,201,0 chrXIII 203305 . C T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.6893;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.61;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3912,435,0 chrXIII 203606 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.79;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3556,387,0 chrXIII 203921 . C T 4236.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.92;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4236,456,0 chrXIII 203948 . T G 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.299;QD=23.88;ReadPosRankSum=1.713;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4417,492,0 chrXIII 204520 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3960,441,0 chrXIII 204735 . C G 3114 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,135:141:99:3147,357,0 chrXIII 205670 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.48;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4300,474,0 chrXIII 205674 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.197;QD=20.18;ReadPosRankSum=0.423;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4178,457,0 chrXIII 205994 . A C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.648;QD=19.33;ReadPosRankSum=1.709;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2874,333,0 chrXIII 205995 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=144;Dels=0.00;FS=2.580;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.343;QD=20.01;ReadPosRankSum=2.951;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:2915,330,0 chrXIII 206013 . T C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=155;Dels=0.00;FS=11.009;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.975;QD=18.32;ReadPosRankSum=2.386;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2873,330,0 chrXIII 206146 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.48;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1651,180,0 chrXIII 206248 . T C 958 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.37;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:991,111,0 chrXIII 206261 . T C 805 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.18;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:96:838,96,0 chrXIII 206272 . T C 758 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.66;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:791,90,0 chrXIII 206335 . G A 415 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=17.29;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,22:24:51:448,51,0 chrXIII 206354 . A G 788 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.91;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:821,99,0 chrXIII 206416 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.25;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2179,234,0 chrXIII 206481 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2183,240,0 chrXIII 206980 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3610,414,0 chrXIII 207028 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.67;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3877,429,0 chrXIII 207364 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=128;Dels=0.00;FS=7.737;HaplotypeScore=14.2346;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.166;QD=20.90;ReadPosRankSum=2.411;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2708,309,0 chrXIII 207796 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.75;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3327,387,0 chrXIII 207880 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=191;Dels=0.00;FS=5.793;HaplotypeScore=11.8968;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.816;QD=23.54;ReadPosRankSum=2.953;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4497,507,0 chrXIII 208048 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.66;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4101,450,0 chrXIII 208073 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.3390;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.10;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4089,441,0 chrXIII 208108 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.77;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4093,456,0 chrXIII 208467 . C T 5475.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.44;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5475,609,0 chrXIII 208787 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0217;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.58;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3453,369,0 chrXIII 209014 . G A 895 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.55;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:928,102,0 chrXIII 209233 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.09;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1314,144,0 chrXIII 209285 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.93;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1548,177,0 chrXIII 209422 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.634;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.507;QD=23.82;ReadPosRankSum=2.416;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3526,405,0 chrXIII 209449 . C G 3975.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.39;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3975,450,0 chrXIII 209542 . G A 4395.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.63;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4395,474,0 chrXIII 209900 . G A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;DP=220;Dels=0.00;FS=22.490;HaplotypeScore=814.0186;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=0.765;QD=0.07;ReadPosRankSum=-4.538;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:210,10:220:45:45,0,1055 chrXIII 210127 . C T 5725.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.85;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5725,624,0 chrXIII 210212 . G C 4390.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.5687;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.17;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,191:198:99:4390,516,0 chrXIII 210493 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=204;Dels=0.00;FS=6.348;HaplotypeScore=10.7033;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.345;QD=22.78;ReadPosRankSum=2.377;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4648,522,0 chrXIII 210513 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.9287;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.89;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4465,489,0 chrXIII 210609 . G A 5531.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=22.7727;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.61;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5531,600,0 chrXIII 210688 . G A 5075.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.7485;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.50;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5075,573,0 chrXIII 210889 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.124;DP=177;Dels=0.00;FS=9.112;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=1.999;QD=21.97;ReadPosRankSum=3.371;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3889,447,0 chrXIII 210915 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=187;Dels=0.00;FS=2.978;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.909;QD=19.36;ReadPosRankSum=2.410;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:3620,405,0 chrXIII 210922 . T A 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3410;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.627;QD=18.75;ReadPosRankSum=1.620;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3487,396,0 chrXIII 211049 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=151;Dels=0.00;FS=6.711;HaplotypeScore=11.8070;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.090;QD=22.18;ReadPosRankSum=2.417;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3349,381,0 chrXIII 211211 . C A 2753 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.3494;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.39;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2786,300,0 chrXIII 211216 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.7500;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.17;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2937,321,0 chrXIII 211916 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2670,300,0 chrXIII 212014 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.0639;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.71;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2855,324,0 chrXIII 212197 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.76;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1652,186,0 chrXIII 212592 . C G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.22;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3344,378,0 chrXIII 212695 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8892;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.29;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3938,462,0 chrXIII 212800 . T C 5726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=255;Dels=0.00;FS=2.926;HaplotypeScore=6.6395;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.207;QD=22.45;ReadPosRankSum=2.315;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5726,642,0 chrXIII 212859 . T C 5991.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=17.9577;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.95;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5991,684,0 chrXIII 213058 . C T 5679.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.54;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,248:252:99:5679,636,0 chrXIII 213211 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=193;Dels=0.00;FS=9.813;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.582;QD=20.74;ReadPosRankSum=2.900;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:3,187:193:99:4002,456,0 chrXIII 213228 . G A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.73;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4041,438,0 chrXIII 213247 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.35;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3245,378,0 chrXIII 213301 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.92;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3632,411,0 chrXIII 213451 . C G 4160.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.37;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4160,480,0 chrXIII 213972 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4032,435,0 chrXIII 214086 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=15.26;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:2947,321,0 chrXIII 214290 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.89;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3822,432,0 chrXIII 214378 . A G 5656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=264;Dels=0.00;FS=5.579;HaplotypeScore=12.8022;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.621;QD=21.42;ReadPosRankSum=2.935;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:3,259:264:99:5656,642,0 chrXIII 214530 . C T 5680.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.37;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5680,636,0 chrXIII 214559 . T C 5343.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.54;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5343,600,0 chrXIII 214698 . A G 4898.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.77;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4898,561,0 chrXIII 215306 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.33;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3062,351,0 chrXIII 215320 . A G 2620 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.12;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2653,315,0 chrXIII 215334 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.092;QD=19.16;ReadPosRankSum=1.686;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2907,339,0 chrXIII 215544 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.54;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3766,423,0 chrXIII 215595 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.141;DP=171;Dels=0.00;FS=10.121;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.847;QD=23.06;ReadPosRankSum=4.243;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:7,163:171:99:3943,444,0 chrXIII 215661 . C T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.6064;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.31;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4205,456,0 chrXIII 215779 . C T 5846.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.1170;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.26;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5846,633,0 chrXIII 215994 . T C 5722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=261;Dels=0.00;FS=6.071;HaplotypeScore=14.0959;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.860;QD=21.92;ReadPosRankSum=2.365;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:5722,669,0 chrXIII 216027 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.3023;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.64;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4732,534,0 chrXIII 216105 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.71;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4321,483,0 chrXIII 216321 . A C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=137;Dels=0.01;FS=3.450;HaplotypeScore=9.2019;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.296;QD=21.16;ReadPosRankSum=1.681;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2932,333,0 chrXIII 216327 . C A 2774 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.03;FS=0.000;HaplotypeScore=11.2693;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=19.96;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2807,321,0 chrXIII 216797 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.6884;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.93;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3486,387,0 chrXIII 216942 . A T 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.233;QD=20.23;ReadPosRankSum=1.673;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2440,264,0 chrXIII 216954 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.51;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2330,255,0 chrXIII 217030 . T G 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=3.545;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.112;QD=22.70;ReadPosRankSum=1.696;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2235,255,0 chrXIII 217312 . C A 3209 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.76;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3242,363,0 chrXIII 217508 . G A 5888.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.84;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:5888,639,0 chrXIII 217557 . A C 5174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.415;QD=20.53;ReadPosRankSum=1.180;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:5174,582,0 chrXIII 217558 . T C 5137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=253;Dels=0.00;FS=2.760;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.142;QD=20.30;ReadPosRankSum=2.430;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,249:253:99:5137,585,0 chrXIII 217656 . A G 4916.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.7135;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.55;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4916,561,0 chrXIII 217754 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=17.6876;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.13;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4923,561,0 chrXIII 218051 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=126;Dels=0.00;FS=2.595;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.561;QD=23.11;ReadPosRankSum=2.410;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2945,336,0 chrXIII 218113 . A G 2725 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.60;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2758,312,0 chrXIII 218127 . A G 2410 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.46;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2443,285,0 chrXIII 218786 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.98;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4136,447,0 chrXIII 218827 . A T 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.270;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.816;QD=22.94;ReadPosRankSum=1.710;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3556,387,0 chrXIII 218882 . T C 2847 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.37;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2880,324,0 chrXIII 218963 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.32;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3752,408,0 chrXIII 219146 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.607;QD=22.66;ReadPosRankSum=1.710;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3489,393,0 chrXIII 219326 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.9090;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.63;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4725,510,0 chrXIII 219608 . T C 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.750;QD=19.77;ReadPosRankSum=1.706;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:5179,600,0 chrXIII 219620 . A G 5424.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.5251;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.58;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:5424,612,0 chrXIII 219785 . G A 6129.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=6.7215;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.45;SB=-3.447e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6129,675,0 chrXIII 219807 . A G 5303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=258;Dels=0.00;FS=2.995;HaplotypeScore=11.4191;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.510;QD=20.55;ReadPosRankSum=2.402;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:2,254:258:99:5303,621,0 chrXIII 219863 . T C 5071.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=13.7651;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=18.11;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:5071,573,0 chrXIII 221642 . T C 5772.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5772,675,0 chrXIII 222095 . G C 4313.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=45.1443;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=15.68;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,269:275:99:4313,489,0 chrXIII 223137 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6201;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.55;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4592,501,0 chrXIII 223597 . T A 2557 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.04;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2590,282,0 chrXIII 223609 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.8250;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.02;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2619,288,0 chrXIII 224126 . A G 3027 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.59;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3060,345,0 chrXIII 224148 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=126;Dels=0.00;FS=2.504;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.960;QD=21.39;ReadPosRankSum=2.863;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2728,309,0 chrXIII 224274 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=3.150;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.018;QD=22.45;ReadPosRankSum=1.696;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2188,249,0 chrXIII 224339 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=116;Dels=0.00;FS=4.374;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.166;QD=22.44;ReadPosRankSum=1.702;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2636,303,0 chrXIII 224490 . G C 2312 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.02;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,101:105:99:2345,276,0 chrXIII 224729 . G C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3258,372,0 chrXIII 224985 . C A 5268.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.2249;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=21.86;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5268,597,0 chrXIII 225529 . T G 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=155;Dels=0.00;FS=6.061;HaplotypeScore=10.9127;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.214;QD=21.58;ReadPosRankSum=2.929;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3345,390,0 chrXIII 225550 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7441;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.57;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3499,390,0 chrXIII 225618 . T C 4780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=201;Dels=0.00;FS=2.399;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.301;QD=23.78;ReadPosRankSum=3.408;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:4,196:201:99:4780,543,0 chrXIII 225831 . A G 5490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=253;Dels=0.00;FS=2.720;HaplotypeScore=12.0341;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.885;QD=21.70;ReadPosRankSum=2.420;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:5490,627,0 chrXIII 225848 . A G 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=229;Dels=0.00;FS=5.234;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.234;QD=22.62;ReadPosRankSum=3.399;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:4,223:229:99:5179,591,0 chrXIII 225992 . C A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.86;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4319,471,0 chrXIII 226024 . C T 3910.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.14;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3910,432,0 chrXIII 226071 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9655;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.65;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3476,387,0 chrXIII 226121 . C A 2634 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.59;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2667,294,0 chrXIII 226133 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.20;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2808,306,0 chrXIII 226535 . A G 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.546;QD=22.19;ReadPosRankSum=1.620;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2097,237,0 chrXIII 226822 . A T 352 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:42:385,42,0 chrXIII 226956 . C T 814 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.38;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:93:847,93,0 chrXIII 226967 . T G 996 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.65;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1029,117,0 chrXIII 227027 . A C 2478 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.06;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2511,279,0 chrXIII 227957 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=23.19;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2282,246,0 chrXIII 227975 . T G 2071 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=19.72;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2104,234,0 chrXIII 227978 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.2795;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=19.11;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2040,231,0 chrXIII 228146 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.98;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2695,300,0 chrXIII 228182 . A C 1995 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.03;FS=0.000;HaplotypeScore=5.4138;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=18.64;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2028,234,0 chrXIII 228183 . C T 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4138;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=0.909;QD=19.09;ReadPosRankSum=2.358;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2076,234,0 chrXIII 228217 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.99;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2369,264,0 chrXIII 228322 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.32;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3064,336,0 chrXIII 228901 . C G 2684 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2717,300,0 chrXIII 229206 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3481,384,0 chrXIII 229539 . T C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=5.458;HaplotypeScore=12.6768;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.324;QD=22.24;ReadPosRankSum=1.704;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2768,321,0 chrXIII 229615 . T C 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=106;Dels=0.00;FS=7.332;HaplotypeScore=94.2124;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-0.817;QD=18.22;ReadPosRankSum=2.331;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,102:106:99:1964,225,0 chrXIII 229786 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.13;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2439,267,0 chrXIII 230470 . T C 4397.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.2258;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.66;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4397,498,0 chrXIII 230627 . C T 5753.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.67;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5753,619,0 chrXIII 230928 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.14;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4003,453,0 chrXIII 230942 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.33;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3707,423,0 chrXIII 230996 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.24;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:2981,327,0 chrXIII 230998 . A G 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.143;DP=169;Dels=0.00;FS=15.221;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.248;QD=16.10;ReadPosRankSum=2.901;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:4,162:169:99:2754,309,0 chrXIII 231382 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.04;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4276,492,0 chrXIII 231506 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.5739;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.16;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3160,348,0 chrXIII 231802 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.21;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3976,453,0 chrXIII 231947 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3812,432,0 chrXIII 232186 . C T 2220 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2253,246,0 chrXIII 232627 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.01;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3001,339,0 chrXIII 232662 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.68;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3176,351,0 chrXIII 232771 . A G 3112 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.46;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3145,357,0 chrXIII 232832 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.15;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3588,393,0 chrXIII 233147 . A G 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.2861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.938;QD=19.89;ReadPosRankSum=1.700;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2201,252,0 chrXIII 233274 . A T 990 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.80;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1023,117,0 chrXIII 233374 . T C 1221 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1254,141,0 chrXIII 233936 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.62;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3610,399,0 chrXIII 234329 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.78;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3758,405,0 chrXIII 234475 . T C 1282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.721;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.609;QD=22.89;ReadPosRankSum=1.609;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1315,147,0 chrXIII 234484 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.78;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1072,123,0 chrXIII 234518 . C G 768 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.33;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:90:801,90,0 chrXIII 234542 . T A 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.983;QD=21.86;ReadPosRankSum=-0.796;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,36:37:90:842,90,0 chrXIII 234636 . A T 642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.347;QD=21.40;ReadPosRankSum=1.617;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,29:30:75:675,75,0 chrXIII 234644 . A G 509 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.13;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:63:542,63,0 chrXIII 235023 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.397;QD=22.00;ReadPosRankSum=2.385;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4158,468,0 chrXIII 235295 . C T 5281.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.04;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5281,588,0 chrXIII 235304 . C A 5549.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=4.4546;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.55;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5549,624,0 chrXIII 235740 . A G 5157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.784;QD=20.46;ReadPosRankSum=2.430;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:5157,588,0 chrXIII 235798 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8294;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3963,429,0 chrXIII 236370 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.88;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2994,327,0 chrXIII 236410 . T C 3137 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.51;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3170,360,0 chrXIII 236819 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.02;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2240,255,0 chrXIII 236833 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.72;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2464,270,0 chrXIII 237159 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.628;QD=23.37;ReadPosRankSum=1.710;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3762,441,0 chrXIII 237882 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.1387;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.25;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4040,453,0 chrXIII 237965 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=195;Dels=0.00;FS=6.362;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.737;QD=23.46;ReadPosRankSum=2.374;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4574,516,0 chrXIII 238008 . C A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.34;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4156,459,0 chrXIII 238157 . G T 2509 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.63;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2542,276,0 chrXIII 238290 . T C 988 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.33;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1021,123,0 chrXIII 238380 . A G 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=49;Dels=0.00;FS=13.892;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.591;QD=21.43;ReadPosRankSum=1.662;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1083,132,0 chrXIII 238422 . G A 1634 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1667,186,0 chrXIII 238521 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.99;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3137,351,0 chrXIII 238534 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=9.864;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.935;QD=22.15;ReadPosRankSum=1.705;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2824,330,0 chrXIII 238681 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.637;QD=21.01;ReadPosRankSum=1.656;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2891,324,0 chrXIII 238751 . A G 787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=29.2480;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.515;QD=11.24;ReadPosRankSum=2.375;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:3,66:70:96:820,96,0 chrXIII 238849 . C T 715 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.83;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:748,81,0 chrXIII 239557 . C T 2806 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6552;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=25.28;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2839,306,0 chrXIII 239731 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=163;Dels=0.00;FS=5.550;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.832;QD=21.61;ReadPosRankSum=2.932;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3522,396,0 chrXIII 239815 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.9468;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.36;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3546,393,0 chrXIII 239887 . T C 3179 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.39;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3212,363,0 chrXIII 239896 . A G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.374;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.417;QD=21.26;ReadPosRankSum=1.707;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2945,336,0 chrXIII 240226 . T C 2124 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.24;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2157,252,0 chrXIII 240460 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.04;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:995,108,0 chrXIII 240525 . T C 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.091;DP=55;Dels=0.00;FS=3.054;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.607;QD=19.00;ReadPosRankSum=2.360;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1078,120,0 chrXIII 240594 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.97;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3922,438,0 chrXIII 240772 . A G 5570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=246;Dels=0.00;FS=6.707;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.649;QD=22.64;ReadPosRankSum=2.409;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:5570,636,0 chrXIII 241545 . G C 1978 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.50;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2011,237,0 chrXIII 241597 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1898,204,0 chrXIII 241669 . C T 604 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.89;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:637,69,0 chrXIII 241872 . A G 122.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=9.39;SB=-1.229e+02 GT:AD:DP:GQ:PL 1/1:0,12:13:18:155,18,0 chrXIII 241912 . A G 370 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.47;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:48:403,48,0 chrXIII 242042 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.49;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3868,420,0 chrXIII 242103 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.9636;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.78;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3441,378,0 chrXIII 242213 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=185;Dels=0.00;FS=2.811;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.821;QD=22.16;ReadPosRankSum=2.410;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4100,465,0 chrXIII 242235 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=5.514;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.195;QD=20.25;ReadPosRankSum=1.674;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3665,423,0 chrXIII 242692 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.305;QD=20.52;ReadPosRankSum=1.632;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2885,330,0 chrXIII 242727 . T A 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9258;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.178;QD=22.66;ReadPosRankSum=1.709;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3399,384,0 chrXIII 242849 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=149;Dels=0.01;FS=4.039;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.931;QD=19.66;ReadPosRankSum=1.685;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2963,336,0 chrXIII 242853 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.66;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3256,351,0 chrXIII 243084 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.87;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3422,393,0 chrXIII 243198 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4059,444,0 chrXIII 243413 . C T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.75;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4232,459,0 chrXIII 243473 . A G 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=213;Dels=0.00;FS=3.424;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.401;QD=21.15;ReadPosRankSum=1.715;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4504,510,0 chrXIII 243623 . G A 4548.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.2447;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.86;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,213:218:99:4548,492,0 chrXIII 243777 . G T 5160.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=18.7993;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.63;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5160,567,0 chrXIII 244001 . G C 5105.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=9.8043;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.05;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5105,597,0 chrXIII 244359 . C T 5785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=258;Dels=0.00;FS=3.113;HaplotypeScore=12.1623;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.164;QD=22.42;ReadPosRankSum=1.691;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:1,255:258:99:5785,639,0 chrXIII 244572 . T C 5387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.666;DP=255;Dels=0.00;FS=14.818;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.740;QD=21.13;ReadPosRankSum=4.157;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:6,245:255:99:5387,609,0 chrXIII 244974 . A G 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=194;Dels=0.00;FS=14.511;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.130;QD=22.10;ReadPosRankSum=3.343;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4288,492,0 chrXIII 245621 . C T 5427.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=18.71;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:5427,597,0 chrXIII 245624 . C T 5289.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=4.4733;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.69;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:5289,579,0 chrXIII 246258 . C T 6844.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-3.256e+03 GT:AD:DP:GQ:PL 1/1:0,297:300:99:6844,750,0 chrXIII 246803 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3612,417,0 chrXIII 246910 . A T 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4985;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.707;QD=24.19;ReadPosRankSum=1.163;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3386,366,0 chrXIII 247126 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.632;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.155;QD=20.50;ReadPosRankSum=1.640;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3128,363,0 chrXIII 247484 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.15;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2134,237,0 chrXIII 247728 . T G 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=191;Dels=0.00;FS=2.731;HaplotypeScore=13.5943;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.122;QD=23.47;ReadPosRankSum=2.372;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4482,504,0 chrXIII 247796 . T C 6961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=320;Dels=0.00;FS=3.381;HaplotypeScore=20.8830;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-1.242;QD=21.75;ReadPosRankSum=1.721;SB=-3.649e+03 GT:AD:DP:GQ:PL 1/1:1,317:320:99:6961,812,0 chrXIII 247860 . C G 5217.01 SnpCluster AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=17.16;SB=-3.668e+03 GT:AD:DP:GQ:PL 1/1:0,302:304:99:5217,609,0 chrXIII 247862 . C T 5231.01 SnpCluster AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=3.3282;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=17.61;SB=-3.755e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:5231,579,0 chrXIII 247866 . T G 4900.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-0.148;QD=16.12;ReadPosRankSum=1.721;SB=-3.709e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:4900,567,0 chrXIII 247895 . T C 3098 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=20.2789;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=12.10;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:3131,366,0 chrXIII 248171 . C T 6206.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=10.5415;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.96;SB=-3.995e+03 GT:AD:DP:GQ:PL 1/1:0,311:311:99:6206,681,0 chrXIII 248618 . G C 1457 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=16.56;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1490,171,0 chrXIII 248627 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=15.94;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1388,150,0 chrXIII 248660 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.89;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1828,201,0 chrXIII 248858 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.11;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3191,348,0 chrXIII 249362 . T C 6546.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.89;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:6546,744,0 chrXIII 249476 . T C 5782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=263;Dels=0.00;FS=2.945;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.728;QD=21.98;ReadPosRankSum=2.393;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:2,260:263:99:5782,669,0 chrXIII 249527 . T C 5971.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.32;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5971,669,0 chrXIII 250010 . A G 4575.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.58;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4575,519,0 chrXIII 250199 . C T 9146.01 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.69;SB=-3.225e+03 GT:AD:DP:GQ:PL 1/1:0,384:386:99:9146,1005,0 chrXIII 251274 . A C 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=5.185;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.493;QD=23.09;ReadPosRankSum=1.690;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3810,426,0 chrXIII 251286 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.68;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3515,387,0 chrXIII 251609 . A G 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=195;Dels=0.00;FS=2.729;HaplotypeScore=14.8496;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.082;QD=21.38;ReadPosRankSum=2.412;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4169,483,0 chrXIII 251661 . G T 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.854;DP=126;Dels=0.00;FS=0.991;HaplotypeScore=28.1683;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=2.286;QD=10.13;ReadPosRankSum=-1.041;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:17,104:126:99:1309,137,0 chrXIII 251736 . T G 2621 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.03;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2654,306,0 chrXIII 251941 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.67;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2821,318,0 chrXIII 252379 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.5016;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=22.38;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4320,480,0 chrXIII 252532 . G A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.01;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4441,474,0 chrXIII 253248 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.41;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3395,384,0 chrXIII 253274 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.43;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3499,399,0 chrXIII 253309 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=3.785;HaplotypeScore=8.0628;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.170;QD=21.60;ReadPosRankSum=1.709;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3305,378,0 chrXIII 253845 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=171;Dels=0.00;FS=4.083;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.691;QD=22.74;ReadPosRankSum=1.712;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3889,444,0 chrXIII 254349 . G T 3174 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.17;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3207,360,0 chrXIII 254427 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=198;Dels=0.00;FS=3.658;HaplotypeScore=10.5512;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.128;QD=21.69;ReadPosRankSum=1.714;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4294,498,0 chrXIII 255052 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3959,426,0 chrXIII 255569 . A G 5867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=256;Dels=0.00;FS=3.133;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.180;QD=22.92;ReadPosRankSum=1.704;SB=-3.086e+03 GT:AD:DP:GQ:PL 1/1:1,250:256:99:5867,663,0 chrXIII 256691 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4206,465,0 chrXIII 257090 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5779;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3628,423,0 chrXIII 257217 . T A 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.6353;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.714;QD=22.30;ReadPosRankSum=1.696;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4303,486,0 chrXIII 257487 . C T 5811.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.85;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5811,636,0 chrXIII 257640 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.43;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4350,510,0 chrXIII 257811 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.65;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3420,384,0 chrXIII 258060 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3077,348,0 chrXIII 258493 . T C 3079 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3112,354,0 chrXIII 258884 . A G 2611 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2644,306,0 chrXIII 259094 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.9373;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.36;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3337,363,0 chrXIII 259263 . T A 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.140;DP=135;Dels=0.00;FS=6.940;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.883;QD=20.55;ReadPosRankSum=2.395;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2807,306,0 chrXIII 259663 . T C 1265 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=16.64;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1298,144,0 chrXIII 259759 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=24.45;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2820,306,0 chrXIII 259791 . T C 2651 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=22.28;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2684,294,0 chrXIII 259876 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.59;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2998,330,0 chrXIII 260009 . A G 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=141;Dels=0.00;FS=3.231;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.192;QD=21.14;ReadPosRankSum=1.708;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3014,339,0 chrXIII 260334 . T C 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.245;QD=22.65;ReadPosRankSum=1.681;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3091,354,0 chrXIII 260437 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.54;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2557,288,0 chrXIII 260462 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.58;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2584,297,0 chrXIII 260580 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=174;Dels=0.00;FS=5.888;HaplotypeScore=10.6950;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.035;QD=22.03;ReadPosRankSum=2.948;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3834,441,0 chrXIII 260820 . G A 5307.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.9037;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.39;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5307,588,0 chrXIII 261191 . A G 3677.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.7103;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.27;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3677,420,0 chrXIII 261637 . A G 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.6405;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=-1.490;QD=16.71;ReadPosRankSum=1.697;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1704,195,0 chrXIII 261864 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=166;Dels=0.00;FS=7.761;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.701;QD=23.13;ReadPosRankSum=2.419;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,161:166:99:3840,453,0 chrXIII 262219 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.54;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4827,519,0 chrXIII 262383 . G C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3716,426,0 chrXIII 262578 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.68;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3855,432,0 chrXIII 262645 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=3.808;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;MQRankSum=0.709;QD=22.45;ReadPosRankSum=1.639;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3368,381,0 chrXIII 262691 . G A 3920.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.4227;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.40;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3920,429,0 chrXIII 262749 . T C 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.165;HaplotypeScore=6.0014;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.148;QD=21.91;ReadPosRankSum=1.692;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3813,435,0 chrXIII 262790 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.84;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4112,447,0 chrXIII 262820 . G C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.85;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,154:159:99:3474,405,0 chrXIII 262898 . T C 3151 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.01;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3184,351,0 chrXIII 262958 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.35;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3285,366,0 chrXIII 263216 . A G 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7968;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.431;QD=20.52;ReadPosRankSum=1.707;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2865,321,0 chrXIII 263244 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.83;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2123,231,0 chrXIII 263835 . A T 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.398;QD=23.14;ReadPosRankSum=1.637;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3355,366,0 chrXIII 264034 . A T 4178.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.2888;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.47;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4178,462,0 chrXIII 264868 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3322,363,0 chrXIII 265127 . A T 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=113;Dels=0.00;FS=5.843;HaplotypeScore=10.5829;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.134;QD=21.27;ReadPosRankSum=2.884;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2436,270,0 chrXIII 265251 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3648,423,0 chrXIII 265689 . T C 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=193;Dels=0.00;FS=2.998;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.904;QD=20.90;ReadPosRankSum=2.359;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:2,187:193:99:4034,453,0 chrXIII 266099 . T C 1895 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1928,228,0 chrXIII 266166 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1832,207,0 chrXIII 266262 . A G 2052 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2085,237,0 chrXIII 266327 . C A 2847 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2880,315,0 chrXIII 267158 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2757,312,0 chrXIII 267926 . T A 291 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=22.38;SB=-5.600e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:36:324,36,0 chrXIII 267945 . T C 253 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=19.46;SB=-5.300e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:286,33,0 chrXIII 268003 . A G 264 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=20.31;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:297,33,0 chrXIII 268029 . A G 242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;MQRankSum=-0.744;QD=17.29;ReadPosRankSum=1.488;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:30:275,30,0 chrXIII 268043 . C T 185.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=18.50;SB=-2.902e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:218,24,0 chrXIII 268081 . A G 363 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=20.17;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:45:396,45,0 chrXIII 268094 . T A 347 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=17.35;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:42:380,42,0 chrXIII 268098 . G A 335 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=15.23;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:42:368,42,0 chrXIII 268102 . T G 361 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=17.19;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:45:394,45,0 chrXIII 268153 . A G 494 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=30;Dels=0.03;FS=14.624;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.299;QD=16.47;ReadPosRankSum=1.494;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:60:527,60,0 chrXIII 268427 . C A 2161 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.01;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2194,243,0 chrXIII 268589 . C A 2388 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2421,261,0 chrXIII 268655 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.05;FS=0.000;HaplotypeScore=11.7439;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.56;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1928,210,0 chrXIII 268760 . A C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=3.317;HaplotypeScore=7.0631;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.394;QD=21.51;ReadPosRankSum=1.693;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1947,225,0 chrXIII 268812 . G T 2134 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2167,246,0 chrXIII 268987 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.56;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2447,270,0 chrXIII 269778 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=16.4304;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2877,321,0 chrXIII 270183 . T G 3954.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3954,447,0 chrXIII 270440 . T A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.5070;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.22;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4310,474,0 chrXIII 271232 . A T 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=2.928;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.680;QD=25.03;ReadPosRankSum=2.384;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3755,411,0 chrXIII 271372 . G T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.46;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3815,411,0 chrXIII 271672 . A C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.578;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.816;QD=23.37;ReadPosRankSum=1.687;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3646,420,0 chrXIII 273113 . A C 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=114;Dels=0.00;FS=2.950;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-2.319;QD=20.18;ReadPosRankSum=2.406;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2334,267,0 chrXIII 273116 . A C 2171 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.74;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2204,249,0 chrXIII 273179 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.43;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1586,180,0 chrXIII 273267 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2931,333,0 chrXIII 273767 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=155;Dels=0.00;FS=4.365;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.596;QD=22.72;ReadPosRankSum=1.709;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3521,405,0 chrXIII 274088 . C T 4562.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.8530;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.25;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4562,510,0 chrXIII 274730 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=7.946;HaplotypeScore=13.7543;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.491;QD=22.56;ReadPosRankSum=2.420;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3722,438,0 chrXIII 274871 . T A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4455,495,0 chrXIII 274961 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2960,324,0 chrXIII 275405 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.86;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3952,432,0 chrXIII 275773 . T C 2784 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.82;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2817,318,0 chrXIII 275910 . C G 5146.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.05;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5146,597,0 chrXIII 277164 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=135;Dels=0.00;FS=2.667;HaplotypeScore=9.6731;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.514;QD=21.06;ReadPosRankSum=2.340;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2876,330,0 chrXIII 277293 . T G 1411 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1444,171,0 chrXIII 278290 . G A 7347.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=20.3251;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,312:315:99:7347,799,0 chrXIII 278550 . C G 6691.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=11.4482;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.45;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,296:298:99:6691,750,0 chrXIII 278881 . A G 5131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=244;Dels=0.00;FS=5.713;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.087;QD=21.03;ReadPosRankSum=2.922;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:3,240:244:99:5131,600,0 chrXIII 279390 . C T 7259.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=12.1582;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.29;SB=-3.413e+03 GT:AD:DP:GQ:PL 1/1:0,340:341:99:7259,825,0 chrXIII 279616 . C T 4787.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.69;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4787,528,0 chrXIII 279712 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.039;QD=22.93;ReadPosRankSum=1.693;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4035,456,0 chrXIII 279754 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4071,435,0 chrXIII 279877 . T G 4099.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4099,465,0 chrXIII 280284 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.15;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3936,438,0 chrXIII 280484 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=20.0381;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.70;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3541,387,0 chrXIII 280760 . C A 798.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.759;DP=279;Dels=0.04;FS=25.654;HaplotypeScore=159.5340;MLEAC=1;MLEAF=0.500;MQ=46.31;MQ0=0;MQRankSum=-6.280;QD=2.86;ReadPosRankSum=-7.141;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:179,88:267:99:828,0,1508 chrXIII 280764 . G A 884.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.588;DP=275;Dels=0.00;FS=32.171;HaplotypeScore=139.3407;MLEAC=1;MLEAF=0.500;MQ=46.19;MQ0=0;MQRankSum=-6.820;QD=3.21;ReadPosRankSum=-9.783;SB=-6.010e+02 GT:AD:DP:GQ:PL 0/1:176,98:275:99:914,0,1548 chrXIII 281098 . A G 4164.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.28;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4164,477,0 chrXIII 281111 . C G 4470.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.7302;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.02;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,228:235:99:4470,519,0 chrXIII 281241 . A G 5622.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.23;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5622,627,0 chrXIII 282022 . T C 6102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.967;DP=275;Dels=0.00;FS=10.444;HaplotypeScore=21.3235;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.175;QD=22.19;ReadPosRankSum=4.186;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:6,268:275:99:6102,696,0 chrXIII 282723 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.083;QD=22.07;ReadPosRankSum=1.710;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3553,405,0 chrXIII 282738 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.30;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3301,363,0 chrXIII 283144 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=188;Dels=0.00;FS=2.963;HaplotypeScore=22.1885;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.033;QD=20.71;ReadPosRankSum=2.423;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3893,453,0 chrXIII 283212 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.98;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4196,483,0 chrXIII 283234 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.26;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4145,465,0 chrXIII 283250 . T A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.7584;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.44;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4180,462,0 chrXIII 283288 . G C 3749.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.93;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3749,423,0 chrXIII 283368 . T C 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=4.013;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.965;QD=21.89;ReadPosRankSum=1.706;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2900,330,0 chrXIII 283562 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.08;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1846,204,0 chrXIII 283596 . C G 1595 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.45;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1628,186,0 chrXIII 283876 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.0326;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.60;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4059,453,0 chrXIII 284260 . A G 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=199;Dels=0.00;FS=2.896;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.106;QD=22.16;ReadPosRankSum=2.387;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4410,492,0 chrXIII 284301 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.4859;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.81;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3900,423,0 chrXIII 284383 . C T 5201.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=21.6717;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.32;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5201,564,0 chrXIII 284443 . T C 4461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.9870;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.768;QD=20.85;ReadPosRankSum=1.699;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4461,513,0 chrXIII 284449 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.8359;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.06;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4401,507,0 chrXIII 284491 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=18.2751;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.63;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3593,393,0 chrXIII 284713 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.65;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3855,423,0 chrXIII 285133 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.42;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4245,480,0 chrXIII 285222 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.8053;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.890;QD=22.84;ReadPosRankSum=2.418;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3609,408,0 chrXIII 285345 . A C 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.622;DP=212;Dels=0.00;FS=5.853;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.852;QD=20.00;ReadPosRankSum=2.699;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:3,207:212:99:4240,477,0 chrXIII 285414 . T C 4476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=206;Dels=0.00;FS=8.033;HaplotypeScore=10.1885;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.161;QD=21.73;ReadPosRankSum=2.354;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4476,525,0 chrXIII 285468 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3502,387,0 chrXIII 285831 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.06;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1463,168,0 chrXIII 285841 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.45;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1720,186,0 chrXIII 285936 . G A 2494 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.88;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2527,276,0 chrXIII 286104 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.31;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3823,423,0 chrXIII 286123 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.85;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4030,456,0 chrXIII 286312 . C G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.35;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,142:148:99:3308,375,0 chrXIII 286754 . C A 2437 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.83;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2470,279,0 chrXIII 286840 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.77;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2970,330,0 chrXIII 286884 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.66;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2657,282,0 chrXIII 286896 . T C 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.188;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.236;QD=19.97;ReadPosRankSum=1.704;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2529,288,0 chrXIII 286996 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.36;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2439,270,0 chrXIII 287338 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1364,150,0 chrXIII 287411 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.09;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2876,315,0 chrXIII 287682 . T A 2033 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.86;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2066,222,0 chrXIII 287879 . A C 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.999;QD=22.67;ReadPosRankSum=1.632;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2391,273,0 chrXIII 287910 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=102.4496;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.65;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2615,285,0 chrXIII 288024 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.69;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3620,411,0 chrXIII 288031 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=167;Dels=0.00;FS=6.426;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-1.943;QD=20.60;ReadPosRankSum=2.420;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:3441,390,0 chrXIII 288433 . T A 4928.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.7893;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.58;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4928,549,0 chrXIII 288558 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=192;Dels=0.00;FS=3.031;HaplotypeScore=12.8442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.213;QD=21.46;ReadPosRankSum=2.424;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:4121,468,0 chrXIII 289245 . C T 5126.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=18.6528;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.63;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5126,576,0 chrXIII 289390 . A G 6236.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.14;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:6236,705,0 chrXIII 289416 . C T 6797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=310;Dels=0.00;FS=3.578;HaplotypeScore=10.6785;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.486;QD=21.93;ReadPosRankSum=1.564;SB=-3.685e+03 GT:AD:DP:GQ:PL 1/1:1,309:310:99:6797,716,0 chrXIII 289464 . C T 5371.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.66;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5371,606,0 chrXIII 289539 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.43;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3867,456,0 chrXIII 289762 . A G 2169 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.46;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2202,252,0 chrXIII 290142 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.0593;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.75;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3837,429,0 chrXIII 290445 . A G 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=8.634;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.122;QD=21.92;ReadPosRankSum=2.372;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4187,477,0 chrXIII 290456 . A C 4222.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.3887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.43;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4222,483,0 chrXIII 290511 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.35;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3907,435,0 chrXIII 290576 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.22;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2724,306,0 chrXIII 290664 . T A 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=167;Dels=0.00;FS=10.537;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.023;QD=23.49;ReadPosRankSum=2.376;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3923,429,0 chrXIII 290769 . T C 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=101;Dels=0.00;FS=12.487;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=2.272;QD=21.76;ReadPosRankSum=3.369;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:4,97:101:99:2231,255,0 chrXIII 290867 . G T 2148 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.85;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2181,237,0 chrXIII 291003 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.11;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3675,417,0 chrXIII 291091 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.39;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2583,282,0 chrXIII 291392 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4020,456,0 chrXIII 291877 . T C 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=2.973;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.847;QD=21.42;ReadPosRankSum=2.286;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2946,345,0 chrXIII 292016 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.60;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4294,483,0 chrXIII 292060 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.41;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3585,399,0 chrXIII 292537 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8708;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3236,363,0 chrXIII 292748 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3771,426,0 chrXIII 292852 . A T 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.951;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.102;QD=23.64;ReadPosRankSum=1.665;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3641,405,0 chrXIII 293346 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.225;QD=22.83;ReadPosRankSum=1.653;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3047,348,0 chrXIII 293978 . A C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=192;Dels=0.00;FS=13.319;HaplotypeScore=18.1462;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.079;QD=21.82;ReadPosRankSum=2.963;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:4189,480,0 chrXIII 294133 . A G 4076.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.64;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4076,471,0 chrXIII 294166 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=171;Dels=0.00;FS=10.399;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.329;QD=19.72;ReadPosRankSum=2.406;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3372,396,0 chrXIII 294426 . C G 2827 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2860,336,0 chrXIII 295343 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.37;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3030,327,0 chrXIII 295569 . A C 3121 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3154,357,0 chrXIII 295950 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.82;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3382,369,0 chrXIII 296162 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.594;QD=22.76;ReadPosRankSum=1.682;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:3220,366,0 chrXIII 296427 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3322,387,0 chrXIII 297000 . A G 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.527;QD=19.63;ReadPosRankSum=1.535;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2133,246,0 chrXIII 297140 . A G 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=103;Dels=0.00;FS=3.026;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.591;QD=20.83;ReadPosRankSum=2.353;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2178,249,0 chrXIII 297194 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=21.29;ReadPosRankSum=1.687;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1672,192,0 chrXIII 297405 . A G 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.598;DP=96;Dels=0.00;FS=6.413;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.468;QD=21.84;ReadPosRankSum=0.468;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:3,90:96:99:2130,224,0 chrXIII 298131 . T A 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=2.984;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.838;QD=24.16;ReadPosRankSum=2.407;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2835,303,0 chrXIII 298692 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.018;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.485;QD=18.81;ReadPosRankSum=3.669;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:5,179:186:99:3499,364,0 chrXIII 298710 . T A 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.383;DP=194;Dels=0.00;FS=2.532;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.399;QD=21.52;ReadPosRankSum=1.689;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4175,418,0 chrXIII 298799 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.57;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3859,435,0 chrXIII 298845 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=154;Dels=0.00;FS=9.379;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.349;QD=22.11;ReadPosRankSum=2.902;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3405,393,0 chrXIII 300558 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.41;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2351,255,0 chrXIII 300623 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3287;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=24.14;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2230,246,0 chrXIII 300676 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=13.5107;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=21.87;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2111,240,0 chrXIII 301151 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=190;Dels=0.00;FS=6.812;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.252;QD=20.21;ReadPosRankSum=2.398;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3840,453,0 chrXIII 301214 . C T 5131.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5131,561,0 chrXIII 301274 . C T 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.941;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.038;QD=22.18;ReadPosRankSum=-1.431;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4103,439,0 chrXIII 302548 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.002;QD=23.83;ReadPosRankSum=1.711;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3955,441,0 chrXIII 302628 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=118;Dels=0.00;FS=7.686;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.928;QD=21.55;ReadPosRankSum=2.366;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2576,294,0 chrXIII 303266 . A G 4073.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.14;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4073,477,0 chrXIII 303300 . T C 4841.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.41;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4841,552,0 chrXIII 303354 . T G 4349.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.53;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4349,507,0 chrXIII 303419 . T A 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.3393;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.576;QD=23.43;ReadPosRankSum=1.680;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4686,507,0 chrXIII 303491 . T C 5588.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=8.1197;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.10;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5588,648,0 chrXIII 303509 . G A 5652.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=4.8643;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.90;SB=-3.415e+03 GT:AD:DP:GQ:PL 1/1:0,297:299:99:5652,639,0 chrXIII 303533 . C T 5928.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=13.5405;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.44;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,304:305:99:5928,669,0 chrXIII 303638 . A T 6048.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=17.8667;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.00;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6048,672,0 chrXIII 303755 . T A 5265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=265;Dels=0.00;FS=4.990;HaplotypeScore=21.3150;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.582;QD=19.87;ReadPosRankSum=1.536;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:5265,582,0 chrXIII 303923 . T G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=172;Dels=0.00;FS=10.228;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.983;QD=19.84;ReadPosRankSum=2.924;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3413,387,0 chrXIII 303930 . C G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.38;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3445,393,0 chrXIII 304117 . G A 4861.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.90;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4861,528,0 chrXIII 304118 . G A 4851.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.85;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4851,528,0 chrXIII 304595 . T C 5196.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.87;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5196,591,0 chrXIII 304601 . C T 5253.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.53;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5253,567,0 chrXIII 304685 . T A 4744.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.60;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4744,519,0 chrXIII 304946 . T C 5016.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.80;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5016,576,0 chrXIII 305013 . T G 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=229;Dels=0.00;FS=2.820;HaplotypeScore=18.6830;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.037;QD=21.42;ReadPosRankSum=2.417;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,224:229:99:4905,555,0 chrXIII 305171 . A G 6633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=331;Dels=0.00;FS=7.718;HaplotypeScore=15.3016;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.609;QD=20.04;ReadPosRankSum=2.420;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:2,328:331:99:6633,759,0 chrXIII 305192 . T A 101.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=290.7332;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.829;QD=0.33;ReadPosRankSum=0.717;SB=-3.527e+03 GT:AD:DP:GQ:PL 1/1:1,306:307:18:134,18,0 chrXIII 305513 . G T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.41;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3281,357,0 chrXIII 305614 . G T 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=6.3169;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.099;QD=16.91;ReadPosRankSum=2.142;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2349,267,0 chrXIII 305615 . T A 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=6.3169;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.483;QD=16.76;ReadPosRankSum=-0.373;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2329,241,0 chrXIII 305627 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=16.80;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2150,237,0 chrXIII 305685 . G A 278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.260;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=29.4881;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=0.433;QD=2.34;ReadPosRankSum=-1.559;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:1,39:119:36:311,36,0 chrXIII 305906 . G A 5622.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.23;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5622,633,0 chrXIII 305967 . T G 7480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.273;QD=23.52;ReadPosRankSum=1.699;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:1,316:318:99:7480,846,0 chrXIII 306044 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.26;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3571,408,0 chrXIII 306097 . G A 5687.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.21;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5687,633,0 chrXIII 306582 . T G 975 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.149;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;MQRankSum=1.696;QD=10.26;ReadPosRankSum=-0.346;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1008,114,0 chrXIII 306585 . G T 902.08 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.486;DP=103;Dels=0.00;FS=33.951;HaplotypeScore=4.8463;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=-3.696;QD=8.76;ReadPosRankSum=4.257;SB=-6.021e+02 GT:AD:DP:GQ:PL 1/1:9,94:103:20:935,20,0 chrXIII 306586 . G C 871.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.029;DP=105;Dels=0.00;FS=37.503;HaplotypeScore=4.8463;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;MQRankSum=-3.881;QD=8.30;ReadPosRankSum=4.525;SB=-5.926e+02 GT:AD:DP:GQ:PL 1/1:10,95:105:4:902,4,0 chrXIII 306587 . A C 875.07 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;DP=108;Dels=0.00;FS=35.888;HaplotypeScore=14.6900;MLEAC=1;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=-3.880;QD=8.10;ReadPosRankSum=4.308;SB=-6.041e+02 GT:AD:DP:GQ:PL 0/1:10,97:108:15:905,0,15 chrXIII 306590 . C A 1096 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=23.7393;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;QD=6.89;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:1129,126,0 chrXIII 306761 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.7850;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=1.526;QD=20.97;ReadPosRankSum=1.650;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3565,405,0 chrXIII 306769 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=126.7480;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=20.22;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3376,366,0 chrXIII 306777 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=123.6045;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=20.94;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3309,366,0 chrXIII 307008 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.52;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3783,429,0 chrXIII 307036 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.411;DP=180;Dels=0.00;FS=8.151;HaplotypeScore=11.4330;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.493;QD=21.60;ReadPosRankSum=3.342;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:4,175:180:99:3888,447,0 chrXIII 307069 . T G 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=177;Dels=0.00;FS=5.492;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.063;QD=21.47;ReadPosRankSum=2.949;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3801,438,0 chrXIII 307416 . T C 2280 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.36;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2313,261,0 chrXIII 307426 . A G 2186 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.82;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2219,255,0 chrXIII 307764 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=176;Dels=0.00;FS=3.035;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;MQRankSum=0.161;QD=15.62;ReadPosRankSum=2.422;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:2782,324,0 chrXIII 307769 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=3.186;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;MQRankSum=-0.812;QD=16.20;ReadPosRankSum=1.713;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:2901,330,0 chrXIII 307796 . G A 2480 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=14.67;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2513,276,0 chrXIII 307797 . G A 2507 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=14.66;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2540,282,0 chrXIII 307804 . C T 2458 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=14.46;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2491,270,0 chrXIII 308296 . T A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.8056;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.76;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3493,387,0 chrXIII 308338 . A C 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=6.286;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.909;QD=24.01;ReadPosRankSum=2.384;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3601,405,0 chrXIII 308762 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=143.0432;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=19.91;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1785,201,0 chrXIII 308764 . A C 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.597;HaplotypeScore=144.6206;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;MQRankSum=-0.577;QD=19.00;ReadPosRankSum=1.692;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1705,198,0 chrXIII 308803 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=14.32;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1436,156,0 chrXIII 308804 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=14.79;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1453,156,0 chrXIII 308827 . C A 1268 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=13.35;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1301,144,0 chrXIII 308911 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.22;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1722,198,0 chrXIII 309160 . T C 2553 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.00;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2586,294,0 chrXIII 309271 . A G 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;MQRankSum=-0.917;QD=18.09;ReadPosRankSum=1.681;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1263,147,0 chrXIII 309285 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;QD=18.37;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1319,141,0 chrXIII 309293 . A G 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;MQRankSum=-1.030;QD=16.24;ReadPosRankSum=1.685;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1235,141,0 chrXIII 309296 . T C 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.890;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;MQRankSum=-1.685;QD=17.69;ReadPosRankSum=1.685;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1342,150,0 chrXIII 309305 . T A 1625 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=17.47;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1658,183,0 chrXIII 309424 . G T 1778 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=19.33;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1811,204,0 chrXIII 309446 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=17.11;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1624,192,0 chrXIII 309469 . T A 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=-1.114;QD=16.66;ReadPosRankSum=2.293;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1599,183,0 chrXIII 309490 . T C 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=0.157;QD=16.12;ReadPosRankSum=1.703;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1983,228,0 chrXIII 309570 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=169;Dels=0.00;FS=6.099;HaplotypeScore=7.8458;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.819;QD=21.61;ReadPosRankSum=1.711;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3652,423,0 chrXIII 309648 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=20.10;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3798,420,0 chrXIII 309650 . G C 3596.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=19.33;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3596,414,0 chrXIII 309663 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=19.12;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3480,381,0 chrXIII 309809 . G C 3199 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.51;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3232,366,0 chrXIII 309810 . A C 3130 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-0.950;QD=20.06;ReadPosRankSum=1.665;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3163,372,0 chrXIII 309813 . G A 3379.01 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.60;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3379,372,0 chrXIII 310534 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.94;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3395,378,0 chrXIII 310687 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3415,384,0 chrXIII 310813 . C T 4981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=203;Dels=0.00;FS=3.832;HaplotypeScore=10.6923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.520;QD=24.54;ReadPosRankSum=1.408;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4981,552,0 chrXIII 311235 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2104,231,0 chrXIII 311506 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.59;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2925,333,0 chrXIII 311560 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=162;Dels=0.00;FS=2.549;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.063;QD=22.41;ReadPosRankSum=2.931;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:3,157:162:99:3631,408,0 chrXIII 311582 . A T 3194 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.38;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3227,357,0 chrXIII 312699 . C A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8530;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.90;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4182,471,0 chrXIII 312854 . C A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.77;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3614,399,0 chrXIII 312892 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.4980;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.64;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3594,390,0 chrXIII 312920 . C A 2944 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.7618;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.16;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2977,336,0 chrXIII 312980 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=4.771;HaplotypeScore=9.6768;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.363;QD=21.37;ReadPosRankSum=1.709;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3238,381,0 chrXIII 313018 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=163;Dels=0.00;FS=5.924;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.377;QD=22.16;ReadPosRankSum=2.883;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3612,405,0 chrXIII 313051 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.19;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3306,360,0 chrXIII 313064 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.87;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3324,354,0 chrXIII 313329 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.1815;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.50;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3150,354,0 chrXIII 313919 . A G 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.980;QD=21.48;ReadPosRankSum=1.678;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2847,321,0 chrXIII 314187 . T C 2954 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2987,348,0 chrXIII 314570 . G A 5156.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5156,576,0 chrXIII 314816 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3970,429,0 chrXIII 315099 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.61;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1756,195,0 chrXIII 315235 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1656,180,0 chrXIII 315372 . T A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.54;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3485,381,0 chrXIII 315598 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=177;Dels=0.00;FS=2.685;HaplotypeScore=10.8838;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.312;QD=23.10;ReadPosRankSum=2.422;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4088,465,0 chrXIII 316408 . T G 2803 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.60;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2836,324,0 chrXIII 316612 . G A 4954.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.0460;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.26;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4954,537,0 chrXIII 316655 . G C 5304.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.3009;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.78;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5304,600,0 chrXIII 317105 . A T 2579 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2612,294,0 chrXIII 317648 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.445;QD=22.26;ReadPosRankSum=0.971;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4362,507,0 chrXIII 317749 . G T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.44;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3795,411,0 chrXIII 317750 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.78;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3741,411,0 chrXIII 317836 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.8692;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.96;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4003,465,0 chrXIII 318108 . A C 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=202;Dels=0.00;FS=4.749;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.888;QD=23.05;ReadPosRankSum=1.679;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,196:202:99:4656,531,0 chrXIII 318302 . A G 5231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.088;QD=22.17;ReadPosRankSum=1.703;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5231,591,0 chrXIII 318407 . A G 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.4886;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-0.214;QD=19.54;ReadPosRankSum=2.404;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:2,267:269:99:5257,591,0 chrXIII 318419 . C A 4831.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=19.48;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4831,537,0 chrXIII 318424 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.625;DP=245;Dels=0.00;FS=7.958;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=0.150;QD=18.18;ReadPosRankSum=3.771;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:5,240:245:99:4455,507,0 chrXIII 318454 . C G 3892.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=17.15;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,221:227:99:3892,444,0 chrXIII 318678 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.80;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4189,453,0 chrXIII 319105 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.18;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3732,408,0 chrXIII 319247 . T C 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=114;Dels=0.00;FS=7.309;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.339;QD=21.89;ReadPosRankSum=2.341;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2529,288,0 chrXIII 319443 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.577;QD=22.81;ReadPosRankSum=1.703;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2702,297,0 chrXIII 319703 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=135;Dels=0.00;FS=2.828;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.339;QD=22.52;ReadPosRankSum=2.321;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3073,351,0 chrXIII 319884 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3453,387,0 chrXIII 319962 . A G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=150;Dels=0.00;FS=7.379;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.289;QD=20.69;ReadPosRankSum=2.400;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3137,372,0 chrXIII 319980 . A T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.40;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3402,375,0 chrXIII 320282 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=184;Dels=0.00;FS=24.347;HaplotypeScore=13.6265;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.004;QD=19.95;ReadPosRankSum=3.754;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:5,178:184:99:3671,420,0 chrXIII 320560 . C T 2421 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.6015;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.91;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2454,267,0 chrXIII 320676 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.66;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3261,354,0 chrXIII 320998 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.7620;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.076;QD=22.80;ReadPosRankSum=1.653;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3042,345,0 chrXIII 321060 . A G 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;MQRankSum=-1.633;QD=22.29;ReadPosRankSum=1.699;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2373,270,0 chrXIII 321125 . A G 921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=43.0709;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;MQRankSum=-2.276;QD=17.71;ReadPosRankSum=2.747;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:3,49:52:99:954,111,0 chrXIII 321126 . G A 982 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=41.6982;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=20.04;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1015,114,0 chrXIII 321287 . T C 50.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=12.74;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:83,9,0 chrXIII 321436 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=23.96;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1998,225,0 chrXIII 321478 . A T 1765 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=25.21;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1798,201,0 chrXIII 321587 . T C 2409 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=22.10;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2442,279,0 chrXIII 321624 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=18.70;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2315,264,0 chrXIII 321639 . T G 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.505;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.826;QD=17.08;ReadPosRankSum=1.679;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2253,252,0 chrXIII 321646 . A C 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;MQRankSum=-1.299;QD=16.19;ReadPosRankSum=1.705;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2122,240,0 chrXIII 321660 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=17.25;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1982,216,0 chrXIII 321686 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.03;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1889,207,0 chrXIII 321801 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.10;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3442,381,0 chrXIII 321837 . A G 2733 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.0942;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.35;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2766,312,0 chrXIII 321916 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2447;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.08;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3058,345,0 chrXIII 322143 . C T 4222.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.0324;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.82;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4222,477,0 chrXIII 322180 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.97;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3691,423,0 chrXIII 323059 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0554;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.30;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3207,345,0 chrXIII 323081 . C T 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.293;QD=21.22;ReadPosRankSum=2.232;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3152,342,0 chrXIII 323147 . G C 2330 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.38;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2363,270,0 chrXIII 323248 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1161;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=15.95;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1835,204,0 chrXIII 323439 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.146;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.286;QD=22.95;ReadPosRankSum=1.711;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3741,429,0 chrXIII 323578 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.509;QD=24.50;ReadPosRankSum=-0.204;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3332,381,0 chrXIII 323625 . C G 3731.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.7082;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.55;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3731,423,0 chrXIII 323763 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.92;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2640,282,0 chrXIII 323907 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.85;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1650,186,0 chrXIII 323942 . A G 946 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.55;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:979,114,0 chrXIII 323949 . G A 998 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.57;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1031,111,0 chrXIII 324023 . T G 458 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=13.47;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:491,57,0 chrXIII 324028 . G A 456 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=14.25;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:489,54,0 chrXIII 324034 . T G 476 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=14.87;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:509,57,0 chrXIII 324584 . A G 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=176;Dels=0.00;FS=9.563;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.709;QD=22.28;ReadPosRankSum=2.812;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3921,453,0 chrXIII 324605 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.35;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3621,411,0 chrXIII 324629 . T C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=7.599;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.905;QD=20.02;ReadPosRankSum=2.416;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2996,336,0 chrXIII 324689 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.78;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3025,330,0 chrXIII 324732 . A G 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.785;QD=19.03;ReadPosRankSum=1.686;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2888,324,0 chrXIII 324736 . C G 2641 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.21;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2674,309,0 chrXIII 325194 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6921;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4011,444,0 chrXIII 325509 . G A 5413.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.92;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5413,609,0 chrXIII 325602 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.19;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3817,411,0 chrXIII 325675 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.6887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.94;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3550,405,0 chrXIII 325905 . T A 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.415;QD=23.73;ReadPosRankSum=1.646;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2904,315,0 chrXIII 326056 . G T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=17.3574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3358,375,0 chrXIII 326120 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.45;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3705,423,0 chrXIII 326401 . T G 3423.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.39;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3423,387,0 chrXIII 326407 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=19.78;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3060,345,0 chrXIII 326419 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.067;HaplotypeScore=2.7206;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-0.855;QD=20.70;ReadPosRankSum=1.710;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3242,369,0 chrXIII 326503 . A T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.82;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4336,489,0 chrXIII 326686 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3834;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.43;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3608,396,0 chrXIII 326714 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=158;Dels=0.00;FS=2.791;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.241;QD=21.60;ReadPosRankSum=2.387;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3413,399,0 chrXIII 326810 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2555,279,0 chrXIII 327622 . A C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=3.757;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=20.83;ReadPosRankSum=1.702;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2408,282,0 chrXIII 327938 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3612,414,0 chrXIII 328333 . C T 4860.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.94;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4860,537,0 chrXIII 328409 . T C 2446 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.44;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2479,285,0 chrXIII 328706 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.78;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2714,291,0 chrXIII 328760 . T A 1778 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1811,201,0 chrXIII 328866 . T C 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=6.277;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.173;QD=22.17;ReadPosRankSum=2.409;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2715,318,0 chrXIII 329030 . C A 2350 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.50;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2383,258,0 chrXIII 329224 . T C 2383 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8543;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2416,282,0 chrXIII 329517 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.65;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3623,399,0 chrXIII 329673 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3537,405,0 chrXIII 330241 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.08;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4663,519,0 chrXIII 330411 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.33;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3022,345,0 chrXIII 330584 . T C 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=4.849;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.506;QD=20.35;ReadPosRankSum=1.701;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2353,267,0 chrXIII 330819 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3049,327,0 chrXIII 330900 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0748;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.89;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3502,375,0 chrXIII 331046 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3476,393,0 chrXIII 331787 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.33;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2081,240,0 chrXIII 332507 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.62;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2612,285,0 chrXIII 332732 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.7557;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.857;QD=19.62;ReadPosRankSum=1.677;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3727,426,0 chrXIII 332749 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.338;QD=19.13;ReadPosRankSum=1.712;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:3424,393,0 chrXIII 332932 . T C 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=218;Dels=0.00;FS=6.938;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.456;QD=22.71;ReadPosRankSum=2.381;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:2,213:218:99:4951,567,0 chrXIII 333053 . T G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.82;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3775,429,0 chrXIII 333079 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.81;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3489,390,0 chrXIII 333250 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.70;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2950,324,0 chrXIII 333260 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.3343;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.38;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3075,336,0 chrXIII 333399 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.52;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3110,339,0 chrXIII 333449 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.57;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2748,309,0 chrXIII 333509 . T C 2709 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5242;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.68;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2742,309,0 chrXIII 333839 . T G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.475;QD=21.96;ReadPosRankSum=1.712;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3865,453,0 chrXIII 333862 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=3.434;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.274;QD=21.42;ReadPosRankSum=1.675;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:3963,462,0 chrXIII 334198 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.117;QD=21.69;ReadPosRankSum=1.668;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3536,405,0 chrXIII 334222 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0009;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.63;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3342,378,0 chrXIII 334591 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=191;Dels=0.00;FS=7.164;HaplotypeScore=14.0294;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.254;QD=20.49;ReadPosRankSum=2.398;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3914,453,0 chrXIII 334705 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=18.0327;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.98;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3296,378,0 chrXIII 334830 . T G 5243.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.30;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5243,600,0 chrXIII 334870 . T C 4181.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.1888;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.48;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4181,477,0 chrXIII 335180 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.18;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2790,306,0 chrXIII 335225 . A G 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.053;DP=124;Dels=0.00;FS=6.640;HaplotypeScore=8.1811;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.061;QD=21.98;ReadPosRankSum=2.331;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2759,312,0 chrXIII 335290 . G C 3152 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3185,366,0 chrXIII 335351 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.96;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3744,411,0 chrXIII 335383 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.83;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3261,351,0 chrXIII 335404 . T A 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.192;QD=21.35;ReadPosRankSum=1.692;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3650,408,0 chrXIII 335534 . G T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.3840;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.52;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4915,537,0 chrXIII 335853 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.56;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3700,399,0 chrXIII 335870 . T A 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=156;Dels=0.00;FS=3.670;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.933;QD=21.57;ReadPosRankSum=1.688;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3365,375,0 chrXIII 336381 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7094;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.46;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3848,441,0 chrXIII 336424 . G C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.57;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3847,441,0 chrXIII 336425 . C A 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=187;Dels=0.00;FS=6.044;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.918;QD=21.12;ReadPosRankSum=2.304;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3950,441,0 chrXIII 336566 . C T 5172.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.72;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5172,561,0 chrXIII 336629 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=214;Dels=0.00;FS=6.078;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.024;QD=22.00;ReadPosRankSum=2.939;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4708,540,0 chrXIII 336695 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.92;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4447,498,0 chrXIII 336784 . G A 5262.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.22;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5262,573,0 chrXIII 336802 . C A 5617.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.03;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:0,251:255:99:5617,609,0 chrXIII 336845 . C T 4964.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.21;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4964,561,0 chrXIII 337176 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.43;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3407,375,0 chrXIII 337377 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4546;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1858,201,0 chrXIII 337455 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.21;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1468,165,0 chrXIII 337732 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.69;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2970,324,0 chrXIII 337869 . G C 2915 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.93;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2948,345,0 chrXIII 337875 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.34;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2972,336,0 chrXIII 338041 . G C 2772 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.18;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2805,321,0 chrXIII 338329 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.416;QD=22.20;ReadPosRankSum=1.663;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,149:153:99:3396,387,0 chrXIII 338548 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.36;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4263,468,0 chrXIII 338851 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.122;QD=23.42;ReadPosRankSum=1.702;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2703,306,0 chrXIII 338923 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.56;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2625,297,0 chrXIII 339328 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.84;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3112,348,0 chrXIII 339889 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=129;Dels=0.00;FS=5.571;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.242;QD=21.33;ReadPosRankSum=2.899;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2784,321,0 chrXIII 340680 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=6.146;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.223;QD=23.12;ReadPosRankSum=2.403;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2461,279,0 chrXIII 340779 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.28;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3282,378,0 chrXIII 340906 . G A 2287 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.87;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2320,252,0 chrXIII 341020 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.31;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2853,309,0 chrXIII 341111 . T C 4449.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.92;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4449,498,0 chrXIII 341630 . G C 3633.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.44;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3633,414,0 chrXIII 341687 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.33;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2237,255,0 chrXIII 341834 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.46;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3589,408,0 chrXIII 342173 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1205;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.626;QD=20.25;ReadPosRankSum=1.679;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2666,303,0 chrXIII 342294 . A G 2550 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.61;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2583,291,0 chrXIII 342492 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.42;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2342,258,0 chrXIII 342513 . A G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.328;QD=21.83;ReadPosRankSum=1.701;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2456,279,0 chrXIII 342543 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.23;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2945,321,0 chrXIII 342610 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.65;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2978,321,0 chrXIII 342711 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=6.354;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.338;QD=21.37;ReadPosRankSum=2.409;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2597,291,0 chrXIII 342726 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.174;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.353;QD=19.74;ReadPosRankSum=1.700;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2165,246,0 chrXIII 342743 . A G 2066 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.12;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2099,240,0 chrXIII 343341 . C A 2364 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2397,267,0 chrXIII 343482 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.91;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3528,405,0 chrXIII 343909 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2487,276,0 chrXIII 344348 . T A 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.970;QD=24.04;ReadPosRankSum=1.663;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1235,132,0 chrXIII 344475 . G A 4162.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4162,462,0 chrXIII 344829 . C T 5279.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.95;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5279,571,0 chrXIII 344883 . T C 4150.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=17.4999;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.76;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4150,489,0 chrXIII 344937 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=231;Dels=0.00;FS=2.974;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.062;QD=18.65;ReadPosRankSum=2.407;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4307,483,0 chrXIII 344952 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=234;Dels=0.00;FS=3.318;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.888;QD=17.15;ReadPosRankSum=1.658;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:4014,459,0 chrXIII 344963 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=16.82;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4071,444,0 chrXIII 345153 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.43;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3768,417,0 chrXIII 345829 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.203;DP=137;Dels=0.00;FS=5.282;HaplotypeScore=8.8979;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.032;QD=21.09;ReadPosRankSum=3.318;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:2923,327,0 chrXIII 346005 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=3.465;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.611;QD=22.41;ReadPosRankSum=1.631;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3855,441,0 chrXIII 346051 . T G 4863.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.16;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4863,552,0 chrXIII 346123 . G T 4868.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.07;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4868,537,0 chrXIII 346157 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=189;Dels=0.00;FS=2.945;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-0.630;QD=20.19;ReadPosRankSum=2.424;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3815,429,0 chrXIII 346162 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.90;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3742,405,0 chrXIII 346176 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=189;Dels=0.00;FS=3.012;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.100;QD=17.80;ReadPosRankSum=2.423;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:2,183:189:99:3364,390,0 chrXIII 346254 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.5737;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.391;QD=21.40;ReadPosRankSum=1.715;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4365,498,0 chrXIII 346482 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.66;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3509,399,0 chrXIII 346559 . G T 2152 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.19;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2185,246,0 chrXIII 346842 . C A 2572 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2605,285,0 chrXIII 346988 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.4206;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.07;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2477,270,0 chrXIII 347381 . A G 5343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.061;QD=20.55;ReadPosRankSum=1.692;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,257:260:99:5343,606,0 chrXIII 347562 . T C 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=210;Dels=0.00;FS=2.936;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=-0.358;QD=19.62;ReadPosRankSum=2.379;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4120,465,0 chrXIII 347571 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.60;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3998,438,0 chrXIII 347586 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=212;Dels=0.00;FS=4.011;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=0.157;QD=17.83;ReadPosRankSum=1.682;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,208:212:99:3779,435,0 chrXIII 347780 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=3.896;HaplotypeScore=9.1658;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.168;QD=18.61;ReadPosRankSum=1.682;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:3889,459,0 chrXIII 347796 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.9497;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.58;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3474,396,0 chrXIII 348585 . C T 339 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=9.69;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:42:372,42,0 chrXIII 349796 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.08;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2352,270,0 chrXIII 349853 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=151;Dels=0.00;FS=3.001;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.565;QD=22.05;ReadPosRankSum=2.319;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3330,381,0 chrXIII 350027 . G C 2649 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=18.52;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2682,315,0 chrXIII 350030 . T C 2572 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=17.99;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2605,300,0 chrXIII 350056 . A G 2361 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=15.13;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2394,276,0 chrXIII 350057 . A G 2407 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=15.23;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2440,282,0 chrXIII 350144 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=4.023;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.669;QD=20.62;ReadPosRankSum=1.715;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4206,489,0 chrXIII 350240 . T C 2227 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=17.67;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2260,258,0 chrXIII 350249 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=16.26;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2163,249,0 chrXIII 350297 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=15.26;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2169,234,0 chrXIII 350311 . T A 1934 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=14.33;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1967,219,0 chrXIII 350323 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=16.07;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2460,279,0 chrXIII 350334 . T G 2704 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=17.67;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2737,312,0 chrXIII 350369 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=15.58;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2090,231,0 chrXIII 350372 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=15.28;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2126,234,0 chrXIII 350595 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=24.93;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3390,369,0 chrXIII 350752 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.72;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2123,234,0 chrXIII 350896 . A C 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=66;Dels=0.00;FS=2.635;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.610;QD=21.14;ReadPosRankSum=2.892;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:3,62:66:99:1428,162,0 chrXIII 350931 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1225,138,0 chrXIII 351095 . A T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4522,510,0 chrXIII 351608 . G A 5401.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.22;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5401,582,0 chrXIII 351904 . G A 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=187;Dels=0.00;FS=3.945;HaplotypeScore=11.3810;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.894;QD=23.44;ReadPosRankSum=0.279;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4384,474,0 chrXIII 352068 . A G 2862 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.68;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2895,330,0 chrXIII 352087 . C T 2490 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=20.3168;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.01;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2523,276,0 chrXIII 352175 . T C 2520 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.12;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2553,285,0 chrXIII 352244 . C G 2898 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.82;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2931,327,0 chrXIII 352262 . A G 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.090;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.701;QD=22.90;ReadPosRankSum=1.701;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2575,294,0 chrXIII 352504 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5539;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.35;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3022,330,0 chrXIII 352513 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=151;Dels=0.00;FS=4.627;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.889;QD=17.81;ReadPosRankSum=1.662;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:2723,312,0 chrXIII 352695 . G C 4083.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1612;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.52;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4083,468,0 chrXIII 353026 . G C 5299.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.5686;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.66;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:5299,600,0 chrXIII 353180 . C T 5085.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.5406;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.59;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5085,582,0 chrXIII 353228 . T C 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=227;Dels=0.00;FS=4.562;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.101;QD=20.50;ReadPosRankSum=1.685;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,222:227:99:4654,528,0 chrXIII 353238 . A G 4159.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=19.80;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4159,465,0 chrXIII 353260 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.19;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3896,423,0 chrXIII 353329 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.44;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3299,372,0 chrXIII 353429 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.8677;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.77;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2732,297,0 chrXIII 353814 . A G 1761 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.58;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1794,204,0 chrXIII 354080 . T C 5718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.552;DP=245;Dels=0.00;FS=4.862;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.135;QD=23.34;ReadPosRankSum=3.815;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:5,238:245:99:5718,654,0 chrXIII 354247 . C G 7642.01 filter AC=2;AF=1.00;AN=2;DP=452;Dels=0.00;FS=0.000;HaplotypeScore=8.2381;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=16.91;SB=-4.455e+03 GT:AD:DP:GQ:PL 1/1:0,447:452:99:7642,893,0 chrXIII 354248 . A G 7709.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=454;Dels=0.00;FS=12.280;HaplotypeScore=9.8155;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.430;QD=16.98;ReadPosRankSum=2.975;SB=-4.438e+03 GT:AD:DP:GQ:PL 1/1:3,447:454:99:7709,876,0 chrXIII 354296 . A G 8188.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=501;Dels=0.00;FS=12.434;HaplotypeScore=30.8795;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.038;QD=16.34;ReadPosRankSum=2.946;SB=-4.786e+03 GT:AD:DP:GQ:PL 1/1:3,494:501:99:8188,965,0 chrXIII 354466 . A G 9598.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.310;DP=540;Dels=0.00;FS=16.343;HaplotypeScore=42.8538;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.289;QD=17.77;ReadPosRankSum=4.459;SB=-5.307e+03 GT:AD:DP:GQ:PL 1/1:7,531:540:99:9598,1121,0 chrXIII 354798 . T C 3119 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.52;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3152,360,0 chrXIII 354818 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.07;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2540,279,0 chrXIII 354882 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1471,159,0 chrXIII 355137 . G T 1032 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.80;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1065,117,0 chrXIII 355165 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.136;QD=22.32;ReadPosRankSum=2.883;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:3,57:60:99:1372,153,0 chrXIII 355195 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.79;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1580,189,0 chrXIII 355271 . A T 2747 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.48;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2780,309,0 chrXIII 355413 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.74;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3878,435,0 chrXIII 355419 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.48;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3748,411,0 chrXIII 355503 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=2.806;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-1.260;QD=21.78;ReadPosRankSum=2.388;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3485,399,0 chrXIII 355560 . A T 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=176;Dels=0.00;FS=2.612;HaplotypeScore=5.9659;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.370;QD=17.91;ReadPosRankSum=2.422;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3186,360,0 chrXIII 355563 . T C 2851 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.4938;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=17.28;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:2884,339,0 chrXIII 355571 . T C 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.4596;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=1.090;QD=17.08;ReadPosRankSum=1.491;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2748,324,0 chrXIII 355643 . C A 2691 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.4811;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.70;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2724,297,0 chrXIII 355763 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=149;Dels=0.00;FS=2.585;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.054;QD=22.61;ReadPosRankSum=2.912;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3369,390,0 chrXIII 356149 . G A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.67;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4096,444,0 chrXIII 356409 . G C 2751 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.19;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2784,321,0 chrXIII 356427 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=3.772;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.684;QD=22.75;ReadPosRankSum=1.708;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3276,372,0 chrXIII 356463 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.31;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3426,387,0 chrXIII 356625 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.77;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3268,357,0 chrXIII 356924 . C T 4354.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6747;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=24.74;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4354,483,0 chrXIII 362917 . C T 11.37 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=1;MQRankSum=0.731;QD=1.89;ReadPosRankSum=-0.731;SB=-1.283e+00 GT:AD:DP:GQ:PL 0/1:2,4:6:18:41,0,18 chrXIII 362933 . G T 685 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=4.72;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:78:718,78,0 chrXIII 362956 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=9.39;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1348,150,0 chrXIII 362992 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=19.68;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2749,300,0 chrXIII 363033 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=20.80;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3215,345,0 chrXIII 363034 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=20.51;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3192,351,0 chrXIII 363052 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=21.25;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3825,432,0 chrXIII 363346 . G T 1897 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1930,210,0 chrXIII 363478 . C A 2437 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,102:107:99:2470,273,0 chrXIII 363595 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.085;QD=22.98;ReadPosRankSum=1.709;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3447,396,0 chrXIII 364310 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.0741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4433,480,0 chrXIII 364548 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.1239;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.081;QD=21.00;ReadPosRankSum=1.700;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4515,513,0 chrXIII 364597 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.97;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4131,462,0 chrXIII 364639 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=19.18;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3510,408,0 chrXIII 364643 . T G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=181;Dels=0.00;FS=8.533;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-0.101;QD=19.29;ReadPosRankSum=3.363;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:3492,399,0 chrXIII 364657 . G A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.04;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3745,405,0 chrXIII 364735 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.94;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3879,435,0 chrXIII 365100 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.636;QD=22.45;ReadPosRankSum=1.684;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3266,366,0 chrXIII 365131 . A G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=156;Dels=0.00;FS=6.163;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.311;QD=19.90;ReadPosRankSum=2.338;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3137,363,0 chrXIII 365344 . C A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.02;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3624,399,0 chrXIII 365359 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.89;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3626,411,0 chrXIII 365365 . T A 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-1.345;QD=18.46;ReadPosRankSum=1.714;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:3656,408,0 chrXIII 365764 . A G 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.192;QD=21.09;ReadPosRankSum=1.680;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4197,486,0 chrXIII 365847 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=171;Dels=0.00;FS=3.646;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.712;QD=20.58;ReadPosRankSum=1.445;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3520,390,0 chrXIII 365986 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.9450;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.10;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2726,312,0 chrXIII 366310 . G C 4448.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.6731;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.13;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4448,513,0 chrXIII 366479 . C T 5658.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.9131;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.91;SB=-3.101e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5658,621,0 chrXIII 366559 . T C 5476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=250;Dels=0.00;FS=3.170;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.090;QD=21.90;ReadPosRankSum=1.704;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5476,639,0 chrXIII 366629 . C G 4719.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.2973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4719,534,0 chrXIII 366707 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.6763;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.88;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3382,387,0 chrXIII 366864 . A T 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=182;Dels=0.00;FS=9.260;HaplotypeScore=17.3250;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.788;QD=23.20;ReadPosRankSum=2.423;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4223,468,0 chrXIII 366938 . T C 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=187;Dels=0.00;FS=5.293;HaplotypeScore=13.6547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.247;QD=22.33;ReadPosRankSum=2.753;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:3,180:187:99:4176,474,0 chrXIII 367173 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.55;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3309,384,0 chrXIII 367328 . A G 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=186;Dels=0.00;FS=9.448;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;MQRankSum=-0.315;QD=23.40;ReadPosRankSum=2.423;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,181:186:99:4353,492,0 chrXIII 367507 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=13.47;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:3274,375,0 chrXIII 367508 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;MQRankSum=1.074;QD=13.19;ReadPosRankSum=1.703;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:3239,375,0 chrXIII 367636 . T C 5014.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=19.90;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5014,570,0 chrXIII 367643 . C T 5136.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=20.22;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5136,567,0 chrXIII 367662 . G A 4943.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.7210;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.46;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:4943,540,0 chrXIII 367748 . A G 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=210;Dels=0.00;FS=2.797;HaplotypeScore=12.1279;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=1.686;QD=22.26;ReadPosRankSum=2.332;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4675,531,0 chrXIII 367810 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.5353;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.20;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3907,426,0 chrXIII 367856 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=4.857;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.396;QD=21.13;ReadPosRankSum=1.687;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3268,369,0 chrXIII 367942 . A T 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.682;DP=130;Dels=0.00;FS=2.568;HaplotypeScore=9.8695;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.543;QD=21.56;ReadPosRankSum=2.884;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2836,306,0 chrXIII 368078 . A G 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=136;Dels=0.00;FS=5.143;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.137;QD=18.62;ReadPosRankSum=1.706;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2565,297,0 chrXIII 368090 . T A 2253 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0065;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.09;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2286,258,0 chrXIII 368124 . A G 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=10.719;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.147;QD=16.28;ReadPosRankSum=2.408;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:1970,234,0 chrXIII 368250 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.13;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4120,483,0 chrXIII 368331 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.86;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3650,417,0 chrXIII 368445 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.6733;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.73;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3690,405,0 chrXIII 368829 . A T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.19;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4571,504,0 chrXIII 368940 . G T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3955,432,0 chrXIII 369042 . T C 4795.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.00;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4795,537,0 chrXIII 369062 . A C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.9499;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.85;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4009,465,0 chrXIII 369419 . T C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.563;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.215;QD=21.95;ReadPosRankSum=1.706;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2974,345,0 chrXIII 369465 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.15;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2507,276,0 chrXIII 369610 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=137;Dels=0.00;FS=6.246;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.516;QD=21.94;ReadPosRankSum=2.324;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3039,345,0 chrXIII 369783 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.73;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3499,396,0 chrXIII 370224 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.48;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3911,456,0 chrXIII 370246 . C T 4485.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.39;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4485,495,0 chrXIII 370569 . T A 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=182;Dels=0.00;FS=19.349;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.094;QD=21.27;ReadPosRankSum=2.962;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3872,420,0 chrXIII 370707 . A G 1211 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.62;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1244,144,0 chrXIII 370721 . T A 1269 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.15;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1302,141,0 chrXIII 370747 . T A 1368 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.42;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1401,156,0 chrXIII 370776 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=17.89;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1339,150,0 chrXIII 370816 . C T 993 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=16.55;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1026,117,0 chrXIII 370866 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.74;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1766,192,0 chrXIII 370891 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=25.66;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2137,231,0 chrXIII 370941 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.19;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2027,234,0 chrXIII 370999 . A G 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.827;HaplotypeScore=56.6683;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=1.206;QD=21.57;ReadPosRankSum=1.601;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1737,198,0 chrXIII 371047 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=4.210;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=0.149;QD=20.29;ReadPosRankSum=1.702;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2427,282,0 chrXIII 371090 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=23.13;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3156,354,0 chrXIII 371103 . A G 2942 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=22.46;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2975,339,0 chrXIII 371117 . A G 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=119;Dels=0.00;FS=6.130;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;MQRankSum=-0.615;QD=22.12;ReadPosRankSum=2.889;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2665,306,0 chrXIII 371213 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.07;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1971,216,0 chrXIII 371287 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=20.27;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2161,255,0 chrXIII 371308 . G A 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.61;MQ0=0;MQRankSum=0.397;QD=19.30;ReadPosRankSum=0.974;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1886,216,0 chrXIII 371315 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=17.06;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1551,177,0 chrXIII 371320 . G T 1468 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=16.68;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1501,174,0 chrXIII 371362 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=19.41;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2090,234,0 chrXIII 371393 . T C 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-0.208;QD=18.22;ReadPosRankSum=2.410;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2292,258,0 chrXIII 371401 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=19.01;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2352,252,0 chrXIII 371404 . A G 2196 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.43;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2229,258,0 chrXIII 371467 . T C 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=106;Dels=0.00;FS=2.550;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.067;QD=19.34;ReadPosRankSum=2.933;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2083,237,0 chrXIII 371527 . A G 2951 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.54;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2984,351,0 chrXIII 371540 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.65;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3006,333,0 chrXIII 371667 . C A 2296 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.26;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2329,252,0 chrXIII 371689 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.56;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2480,288,0 chrXIII 371760 . A T 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=109;Dels=0.00;FS=9.524;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=-0.213;QD=22.61;ReadPosRankSum=2.936;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2498,273,0 chrXIII 371821 . A G 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;MQRankSum=-0.962;QD=16.97;ReadPosRankSum=1.655;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1560,174,0 chrXIII 371845 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=15.90;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1353,153,0 chrXIII 371851 . A T 1231 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=15.20;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1264,135,0 chrXIII 371856 . A C 1150 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=14.74;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1183,135,0 chrXIII 371874 . A T 1057 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=16.52;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1090,120,0 chrXIII 371904 . A G 897 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;MQRankSum=-1.732;QD=15.47;ReadPosRankSum=1.673;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:930,105,0 chrXIII 371909 . C G 904 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=16.44;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:937,108,0 chrXIII 371910 . T C 926 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;MQRankSum=-1.550;QD=16.25;ReadPosRankSum=1.672;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:959,108,0 chrXIII 371920 . A G 980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;MQRankSum=0.969;QD=16.61;ReadPosRankSum=1.615;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1013,114,0 chrXIII 371940 . C T 1088 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=17.55;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1121,129,0 chrXIII 371941 . T A 1140 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=18.39;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1173,132,0 chrXIII 372277 . G T 2101 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.61;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2134,237,0 chrXIII 372297 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.88;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2090,246,0 chrXIII 372301 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=23.73;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2145,237,0 chrXIII 372322 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.29;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2141,243,0 chrXIII 372399 . T C 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=6.094;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=-0.487;QD=22.25;ReadPosRankSum=2.422;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4028,468,0 chrXIII 372428 . C A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=126.9909;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=22.99;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4000,432,0 chrXIII 372522 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=1;QD=20.86;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1389,159,0 chrXIII 372539 . A G 1049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=0;MQRankSum=1.317;QD=20.98;ReadPosRankSum=1.663;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1082,123,0 chrXIII 372541 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;QD=20.94;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1059,114,0 chrXIII 372583 . A G 648 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=8.88;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:78:681,78,0 chrXIII 378680 . T A 848 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=16.96;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:881,96,0 chrXIII 378748 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.77;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1030,117,0 chrXIII 378772 . C G 1153 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.35;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1186,135,0 chrXIII 378811 . A G 1928 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=20.73;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1961,225,0 chrXIII 378833 . C G 2247 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.82;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2280,267,0 chrXIII 378956 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5420;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.663;QD=23.76;ReadPosRankSum=1.709;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3611,417,0 chrXIII 379090 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.11;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3714,426,0 chrXIII 379170 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=23.35;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3620,390,0 chrXIII 379214 . T G 3123 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.10;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3156,363,0 chrXIII 379243 . T C 2773 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.951;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=-0.270;QD=17.89;ReadPosRankSum=1.665;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:2806,327,0 chrXIII 379247 . A C 2610 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=8.265;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.800;QD=17.06;ReadPosRankSum=2.320;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:2643,306,0 chrXIII 379248 . G A 2784 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=18.32;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2817,309,0 chrXIII 379442 . A T 3001 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.08;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3034,345,0 chrXIII 379637 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0781;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.14;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3355,363,0 chrXIII 379813 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.44;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3446,369,0 chrXIII 379976 . T A 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=140;Dels=0.00;FS=6.435;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.606;QD=18.60;ReadPosRankSum=2.256;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2637,294,0 chrXIII 379984 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.93;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2645,285,0 chrXIII 380209 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=23.38;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1880,213,0 chrXIII 380333 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.1530;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=17.89;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1178,135,0 chrXIII 380979 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=180;Dels=0.00;FS=9.867;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=0.102;QD=19.92;ReadPosRankSum=2.961;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:3,175:180:99:3586,414,0 chrXIII 380997 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-1.489;QD=20.65;ReadPosRankSum=1.712;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3572,405,0 chrXIII 381204 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.77;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3788,438,0 chrXIII 381441 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.021;QD=21.99;ReadPosRankSum=1.647;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3628,411,0 chrXIII 381609 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.517;QD=21.84;ReadPosRankSum=1.655;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2960,333,0 chrXIII 382044 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=188;Dels=0.00;FS=6.085;HaplotypeScore=11.3723;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.070;QD=20.90;ReadPosRankSum=2.930;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:3,183:188:99:3929,441,0 chrXIII 382194 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.59;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3368,372,0 chrXIII 382384 . A T 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.657;QD=21.43;ReadPosRankSum=1.707;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2991,321,0 chrXIII 383224 . G A 5009.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.7190;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.74;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:5009,540,0 chrXIII 383408 . A G 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=3.135;HaplotypeScore=19.5666;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.523;QD=22.67;ReadPosRankSum=1.699;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4806,540,0 chrXIII 383449 . C G 4879.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.98;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4879,570,0 chrXIII 383491 . A G 5641.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=7.6260;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.47;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5641,639,0 chrXIII 384223 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3804,435,0 chrXIII 384682 . C G 4774.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.6097;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.58;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:4774,558,0 chrXIII 384775 . G A 5019.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.74;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5019,546,0 chrXIII 384784 . T C 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=234;Dels=0.00;FS=8.006;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.100;QD=19.33;ReadPosRankSum=2.407;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:4523,513,0 chrXIII 384946 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.47;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4460,489,0 chrXIII 385015 . T A 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=187;Dels=0.00;FS=3.476;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.676;QD=22.11;ReadPosRankSum=1.677;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4135,459,0 chrXIII 385180 . A G 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=204;Dels=0.00;FS=3.121;HaplotypeScore=12.0419;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.688;QD=22.55;ReadPosRankSum=0.392;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,198:204:99:4601,503,0 chrXIII 385378 . G A 5852.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=20.0305;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5852,639,0 chrXIII 385945 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=19.83;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2789,303,0 chrXIII 386206 . A T 2275 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.87;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2308,258,0 chrXIII 386425 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3768,429,0 chrXIII 386530 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4763,531,0 chrXIII 386785 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.151;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.7590;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.075;QD=21.49;ReadPosRankSum=-1.646;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3481,374,0 chrXIII 386875 . C A 2542 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0746;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.34;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2575,288,0 chrXIII 387028 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.24;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1902,207,0 chrXIII 387174 . A G 1245 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.94;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1278,150,0 chrXIII 387573 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=4.141;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-1.642;QD=19.73;ReadPosRankSum=1.714;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3828,441,0 chrXIII 387576 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=8.130;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.375;QD=18.95;ReadPosRankSum=2.411;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:3677,423,0 chrXIII 387784 . T A 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=3.066;HaplotypeScore=12.5215;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.066;QD=21.25;ReadPosRankSum=1.710;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3358,372,0 chrXIII 387830 . A G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=2.984;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.204;QD=17.45;ReadPosRankSum=2.337;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3104,351,0 chrXIII 387876 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=14.82;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:2894,315,0 chrXIII 387879 . A C 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.2055;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.091;QD=14.55;ReadPosRankSum=1.714;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:2812,321,0 chrXIII 388308 . G A 6714.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.39;SB=-3.256e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:6714,747,0 chrXIII 388416 . T C 4465.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.9131;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.55;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4465,507,0 chrXIII 388450 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.48;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4180,477,0 chrXIII 388681 . C T 777 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=12.14;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:93:810,93,0 chrXIII 388751 . T A 1689 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=17.23;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1722,189,0 chrXIII 388771 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=16.07;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1897,207,0 chrXIII 388785 . C T 1961 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=15.20;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1994,219,0 chrXIII 388802 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=14.87;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1847,213,0 chrXIII 388875 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.61;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3421,390,0 chrXIII 388995 . G A 6248.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=15.8124;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.31;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6248,696,0 chrXIII 389031 . C T 6033.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=22.60;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6033,681,0 chrXIII 389046 . C T 6121.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=16.7613;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=22.18;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:6121,684,0 chrXIII 389118 . G A 7472.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=12.2109;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.60;SB=-3.358e+03 GT:AD:DP:GQ:PL 1/1:0,345:346:99:7472,858,0 chrXIII 389211 . C G 6859.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.01;FS=0.000;HaplotypeScore=23.8437;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.72;SB=-3.748e+03 GT:AD:DP:GQ:PL 1/1:0,327:329:99:6859,774,0 chrXIII 389260 . A G 6808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=342;Dels=0.00;FS=3.022;HaplotypeScore=12.9086;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.384;QD=19.91;ReadPosRankSum=1.990;SB=-4.166e+03 GT:AD:DP:GQ:PL 1/1:2,340:342:99:6808,780,0 chrXIII 389271 . C T 7050.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=20.09;SB=-4.322e+03 GT:AD:DP:GQ:PL 1/1:0,351:351:99:7050,777,0 chrXIII 389274 . T A 6959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=351;Dels=0.00;FS=3.252;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=-0.212;QD=19.83;ReadPosRankSum=1.712;SB=-4.389e+03 GT:AD:DP:GQ:PL 1/1:1,350:351:99:6959,754,0 chrXIII 389307 . G A 7914.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=23.5615;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.61;SB=-5.015e+03 GT:AD:DP:GQ:PL 1/1:0,381:384:99:7914,853,0 chrXIII 389541 . T C 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=256;Dels=0.00;FS=4.806;HaplotypeScore=10.9689;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.818;QD=19.28;ReadPosRankSum=1.678;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:4936,579,0 chrXIII 389574 . C T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=25.8859;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.88;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:4399,504,0 chrXIII 389820 . C T 6734.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=8.7530;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.40;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:6734,741,0 chrXIII 389909 . C T 6045.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=15.0478;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.25;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6045,655,0 chrXIII 389952 . T G 6869.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-3.838e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:6869,765,0 chrXIII 390009 . G A 7162.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=22.1558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-3.951e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:7162,781,0 chrXIII 390083 . C T 5758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.7174;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.132;QD=22.40;ReadPosRankSum=-0.273;SB=-3.423e+03 GT:AD:DP:GQ:PL 1/1:1,253:257:99:5758,600,0 chrXIII 390129 . T C 5205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=236;Dels=0.00;FS=4.102;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.392;QD=22.06;ReadPosRankSum=1.717;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,233:236:99:5205,609,0 chrXIII 390237 . T C 5250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=248;Dels=0.00;FS=10.552;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.939;QD=21.17;ReadPosRankSum=2.947;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:3,243:248:99:5250,594,0 chrXIII 390351 . T C 4642.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.7021;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.09;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4642,519,0 chrXIII 390393 . C T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.3612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4644,504,0 chrXIII 390486 . T G 5918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=17.7096;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.862;QD=21.52;ReadPosRankSum=2.242;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:2,270:275:99:5918,666,0 chrXIII 390597 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.25;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4187,456,0 chrXIII 390664 . C G 3856.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.8176;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.79;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3856,438,0 chrXIII 390962 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.50;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2514,291,0 chrXIII 390977 . T A 2596 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=21.28;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2629,294,0 chrXIII 390989 . A G 2156 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=18.59;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2189,249,0 chrXIII 391001 . T C 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=5.051;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=-0.124;QD=18.21;ReadPosRankSum=1.701;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2072,243,0 chrXIII 391053 . A T 1665 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=15.00;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1698,192,0 chrXIII 391060 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=14.13;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:1658,186,0 chrXIII 391137 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.1026;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.606;QD=21.15;ReadPosRankSum=1.703;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2613,303,0 chrXIII 391200 . A G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=5.842;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=0.277;QD=19.52;ReadPosRankSum=1.703;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2356,267,0 chrXIII 391205 . G A 2391 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=20.09;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2424,267,0 chrXIII 391211 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=19.33;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2314,255,0 chrXIII 391335 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.72;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2444,267,0 chrXIII 391443 . T C 2636 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.92;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2669,303,0 chrXIII 391505 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0200;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.11;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1806,198,0 chrXIII 391564 . A T 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=114;Dels=0.00;FS=5.896;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.151;QD=23.44;ReadPosRankSum=2.089;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2705,294,0 chrXIII 391633 . C A 2891 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.09;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2924,318,0 chrXIII 391659 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.10;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2135,231,0 chrXIII 391712 . A G 2287 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=23.10;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2320,267,0 chrXIII 391763 . G A 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=128;Dels=0.00;FS=3.404;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=0.450;QD=21.29;ReadPosRankSum=1.077;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2758,284,0 chrXIII 391766 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=21.17;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2721,294,0 chrXIII 391821 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=18.96;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3218,363,0 chrXIII 391888 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=157;Dels=0.00;FS=3.012;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.898;QD=21.75;ReadPosRankSum=2.418;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3414,390,0 chrXIII 391938 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=20.33;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2656,294,0 chrXIII 391964 . A G 2268 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=18.74;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2301,273,0 chrXIII 391983 . A G 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;MQRankSum=-0.352;QD=13.06;ReadPosRankSum=1.439;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1574,186,0 chrXIII 391991 . T C 1217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=3.768;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;MQRankSum=0.069;QD=11.93;ReadPosRankSum=1.628;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:1250,156,0 chrXIII 392003 . C A 1567 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=12.95;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1600,186,0 chrXIII 392080 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5417;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.23;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3401,381,0 chrXIII 392165 . A G 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;MQRankSum=-0.306;QD=19.14;ReadPosRankSum=1.674;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2311,278,0 chrXIII 392173 . A G 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;MQRankSum=-1.612;QD=17.23;ReadPosRankSum=1.702;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2015,240,0 chrXIII 392209 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;QD=14.75;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1405,168,0 chrXIII 392211 . A G 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=4.244;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;MQRankSum=-1.360;QD=14.56;ReadPosRankSum=1.620;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1387,165,0 chrXIII 392221 . C T 1354 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=14.10;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1387,156,0 chrXIII 392254 . T C 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=136;Dels=0.00;FS=5.653;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;MQRankSum=0.044;QD=15.43;ReadPosRankSum=2.948;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2131,243,0 chrXIII 392261 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=-0.187;QD=16.06;ReadPosRankSum=1.709;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2410,279,0 chrXIII 392366 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=23.39;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3930,444,0 chrXIII 392397 . A G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=4.372;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;MQRankSum=-0.244;QD=18.44;ReadPosRankSum=1.710;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:2947,345,0 chrXIII 392398 . T C 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;MQRankSum=-0.702;QD=18.95;ReadPosRankSum=1.644;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3027,345,0 chrXIII 392476 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=19.76;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:3971,462,0 chrXIII 392530 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=200;Dels=0.00;FS=5.113;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-1.487;QD=19.98;ReadPosRankSum=1.715;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:3996,459,0 chrXIII 392565 . T A 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=4.184;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=-0.479;QD=19.29;ReadPosRankSum=1.687;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2984,330,0 chrXIII 392567 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=19.02;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3038,339,0 chrXIII 392634 . T G 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.481;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.4615;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=1.492;QD=21.56;ReadPosRankSum=-1.123;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4656,504,0 chrXIII 392778 . T C 2831 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.95;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2864,327,0 chrXIII 392930 . C A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=19.1767;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.56;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3463,378,0 chrXIII 393006 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8958;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.63;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3355,363,0 chrXIII 393147 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.469;QD=23.41;ReadPosRankSum=1.691;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4027,471,0 chrXIII 393355 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3696,405,0 chrXIII 393599 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.43;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4241,486,0 chrXIII 393759 . A G 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=8.1667;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.669;QD=23.76;ReadPosRankSum=1.711;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3921,444,0 chrXIII 393788 . A T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.41;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3469,378,0 chrXIII 393792 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.07;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3476,387,0 chrXIII 393856 . G A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=14.0314;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.99;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3946,453,0 chrXIII 393926 . A T 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=19.0091;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.175;QD=23.39;ReadPosRankSum=1.715;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4631,495,0 chrXIII 394083 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.80;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2528,273,0 chrXIII 394161 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1767,201,0 chrXIII 394303 . A G 1494 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.98;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1527,171,0 chrXIII 394309 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.07;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1578,171,0 chrXIII 394350 . A G 1019 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.80;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1052,120,0 chrXIII 394502 . A G 1874 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.58;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1907,213,0 chrXIII 394541 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.99;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1814,213,0 chrXIII 394601 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=9.760;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.015;QD=23.72;ReadPosRankSum=2.390;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1978,225,0 chrXIII 394663 . G A 1947 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=24.04;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1980,225,0 chrXIII 394731 . G C 2336 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.43;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2369,273,0 chrXIII 394738 . T C 2106 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.45;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2139,243,0 chrXIII 394791 . T A 2159 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.18;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2192,240,0 chrXIII 394852 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.22;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2522,273,0 chrXIII 394875 . A G 58.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.196;DP=120;Dels=0.00;FS=19.917;HaplotypeScore=98.2282;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=-1.754;QD=0.49;ReadPosRankSum=-4.145;SB=-3.512e+00 GT:AD:DP:GQ:PL 1/1:111,9:120:12:91,12,0 chrXIII 394901 . G C 2267 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=18.14;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2300,267,0 chrXIII 395048 . A G 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=4.352;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.228;QD=19.53;ReadPosRankSum=1.644;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3118,363,0 chrXIII 395049 . T C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.200;QD=19.73;ReadPosRankSum=1.688;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3151,360,0 chrXIII 395177 . T A 3144 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.5549;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=18.49;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3177,357,0 chrXIII 395179 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.53;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3221,366,0 chrXIII 395296 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.58;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3277,357,0 chrXIII 395396 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.92;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3616,420,0 chrXIII 395765 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3144;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.095;QD=22.96;ReadPosRankSum=-0.783;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3398,378,0 chrXIII 395969 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2834,315,0 chrXIII 396257 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3639;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.78;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2565,297,0 chrXIII 396358 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.84;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3767,408,0 chrXIII 396448 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=17.0878;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.68;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3447,384,0 chrXIII 396483 . T C 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=187;Dels=0.01;FS=11.466;HaplotypeScore=14.5013;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.364;QD=19.70;ReadPosRankSum=3.562;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:5,181:186:99:3684,429,0 chrXIII 396594 . C A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.02;FS=0.000;HaplotypeScore=15.1233;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.31;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4016,429,0 chrXIII 396726 . C A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=21.60;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3499,393,0 chrXIII 396758 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.25;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3982,432,0 chrXIII 396782 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=19.41;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3358,378,0 chrXIII 396793 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=0.308;QD=17.58;ReadPosRankSum=1.674;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3197,366,0 chrXIII 396801 . G T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=16.73;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3246,369,0 chrXIII 396864 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.29;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3469,393,0 chrXIII 397127 . G C 4819.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.00;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4819,546,0 chrXIII 397143 . C T 4860.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.5751;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.71;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4860,522,0 chrXIII 397289 . C T 4736.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1907;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.82;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4736,519,0 chrXIII 397850 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=199;Dels=0.00;FS=2.933;HaplotypeScore=18.3573;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.155;QD=20.61;ReadPosRankSum=2.412;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4101,468,0 chrXIII 397898 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.2713;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.307;QD=21.18;ReadPosRankSum=1.696;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4109,465,0 chrXIII 397963 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=178;Dels=0.00;FS=9.038;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.407;QD=22.83;ReadPosRankSum=3.282;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:4,173:178:99:4063,462,0 chrXIII 398046 . T C 4050.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.75;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4050,459,0 chrXIII 398139 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.577;QD=22.71;ReadPosRankSum=1.698;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4564,528,0 chrXIII 398212 . A C 3843.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.47;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3843,441,0 chrXIII 398240 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=181;Dels=0.00;FS=2.855;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-1.025;QD=21.35;ReadPosRankSum=2.422;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3865,435,0 chrXIII 398256 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=4.112;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.767;QD=21.84;ReadPosRankSum=0.218;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4019,441,0 chrXIII 398293 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=185;Dels=0.00;FS=5.142;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.986;QD=18.52;ReadPosRankSum=3.375;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:3426,393,0 chrXIII 398295 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.993;QD=18.61;ReadPosRankSum=1.693;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3332,387,0 chrXIII 398326 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.17;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3180,348,0 chrXIII 398377 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=116;Dels=0.00;FS=2.965;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.732;QD=19.92;ReadPosRankSum=2.280;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2344,267,0 chrXIII 398393 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1339;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.01;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2617,297,0 chrXIII 398491 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=110;Dels=0.00;FS=5.826;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=0.583;QD=22.29;ReadPosRankSum=2.936;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:3,106:110:99:2485,279,0 chrXIII 398620 . A C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.571;DP=102;Dels=0.00;FS=9.839;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.190;QD=22.36;ReadPosRankSum=2.811;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:3,98:102:99:2314,264,0 chrXIII 398746 . C A 2051 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.54;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2084,231,0 chrXIII 398813 . A T 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=86;Dels=0.00;FS=8.062;HaplotypeScore=9.4242;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.550;QD=17.24;ReadPosRankSum=3.359;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:5,81:86:99:1516,168,0 chrXIII 398818 . T C 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.252;DP=79;Dels=0.00;FS=19.085;HaplotypeScore=7.6327;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.742;QD=18.44;ReadPosRankSum=3.211;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:5,74:79:99:1490,168,0 chrXIII 398916 . T C 2103 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.14;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2136,240,0 chrXIII 398988 . C G 1566 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.82;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1599,180,0 chrXIII 398994 . C T 1503 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.03;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1536,174,0 chrXIII 399070 . G T 2474 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.70;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2507,276,0 chrXIII 399119 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=123;Dels=0.00;FS=2.951;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.151;QD=21.63;ReadPosRankSum=2.409;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2694,309,0 chrXIII 399189 . A T 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=3.278;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.666;QD=22.72;ReadPosRankSum=1.584;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2691,294,0 chrXIII 399408 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.53;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2315,252,0 chrXIII 399941 . A T 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=3.429;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.697;QD=23.22;ReadPosRankSum=1.608;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4552,516,0 chrXIII 400537 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=146;Dels=0.00;FS=5.607;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.354;QD=20.93;ReadPosRankSum=2.952;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3089,348,0 chrXIII 400617 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=177;Dels=0.00;FS=3.479;HaplotypeScore=14.9499;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.433;QD=22.00;ReadPosRankSum=1.693;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3894,441,0 chrXIII 400907 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=2.993;HaplotypeScore=10.2178;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=2.139;QD=20.59;ReadPosRankSum=2.356;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3274,372,0 chrXIII 400937 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.53;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3071,345,0 chrXIII 401070 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3270,354,0 chrXIII 401250 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=145;Dels=0.00;FS=3.027;HaplotypeScore=12.5460;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.009;QD=21.18;ReadPosRankSum=2.415;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3104,357,0 chrXIII 401326 . G C 2538 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.50;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2571,294,0 chrXIII 401410 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.82;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2499,276,0 chrXIII 401494 . T G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0756;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.91;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3371,384,0 chrXIII 401516 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.34;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3027,339,0 chrXIII 401763 . G C 1902 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.21;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1935,225,0 chrXIII 401773 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.49;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2139,237,0 chrXIII 401933 . C G 2019 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.71;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2052,234,0 chrXIII 402014 . T G 2345 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.51;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2378,270,0 chrXIII 402092 . G T 2721 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4885;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.26;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2754,297,0 chrXIII 402170 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.39;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3292,357,0 chrXIII 402254 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.26;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2847,312,0 chrXIII 402345 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.19;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3628,390,0 chrXIII 402422 . T C 2858 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.50;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2891,336,0 chrXIII 402504 . T C 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=3.044;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.369;QD=24.25;ReadPosRankSum=2.360;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2725,303,0 chrXIII 402537 . A G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.197;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.441;QD=24.17;ReadPosRankSum=1.703;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2909,333,0 chrXIII 403091 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2055,234,0 chrXIII 403256 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2431,282,0 chrXIII 403536 . C A 2510 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2543,273,0 chrXIII 403773 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2570,279,0 chrXIII 403985 . T A 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.321;QD=24.75;ReadPosRankSum=1.703;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2953,324,0 chrXIII 404207 . A T 1610 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=22.36;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1643,180,0 chrXIII 404319 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=16.7487;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=23.16;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1863,207,0 chrXIII 404354 . A G 1945 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.62;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1978,231,0 chrXIII 404381 . G T 2047 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.00;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2080,228,0 chrXIII 404404 . T C 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.130;QD=23.12;ReadPosRankSum=1.658;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2183,246,0 chrXIII 404983 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3083;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.030;QD=20.95;ReadPosRankSum=1.709;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3134,357,0 chrXIII 405111 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.2127;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.57;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3654,399,0 chrXIII 405164 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=2.979;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.251;QD=21.92;ReadPosRankSum=2.319;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2948,333,0 chrXIII 405193 . T C 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.776;QD=19.72;ReadPosRankSum=1.702;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2340,264,0 chrXIII 405205 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.22;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2495,273,0 chrXIII 405305 . A G 2958 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.59;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2991,339,0 chrXIII 405403 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.078;QD=20.74;ReadPosRankSum=1.710;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3319,387,0 chrXIII 405638 . G A 2179 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.7958;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=16.51;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2212,252,0 chrXIII 405726 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=2.984;HaplotypeScore=10.4313;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;MQRankSum=1.538;QD=22.55;ReadPosRankSum=2.407;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2649,297,0 chrXIII 405840 . G A 2385 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.65;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2418,264,0 chrXIII 405911 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.02;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2411,270,0 chrXIII 406116 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.12;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1421,162,0 chrXIII 406222 . A T 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=82;Dels=0.00;FS=9.863;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=-1.754;QD=18.27;ReadPosRankSum=2.914;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1531,174,0 chrXIII 406237 . A T 1433 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=16.86;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1466,162,0 chrXIII 406240 . C T 1440 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=16.36;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1473,168,0 chrXIII 406355 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.469;QD=23.13;ReadPosRankSum=1.700;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2508,288,0 chrXIII 406675 . T C 5083.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.3519;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.10;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5083,582,0 chrXIII 406917 . G C 3749.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.67;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,167:173:99:3749,441,0 chrXIII 407179 . G T 5712.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.00;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:5712,627,0 chrXIII 407191 . T C 5912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=292;Dels=0.00;FS=5.135;HaplotypeScore=18.5453;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.534;QD=20.25;ReadPosRankSum=3.414;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:4,288:292:99:5912,678,0 chrXIII 407557 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.25;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3869,444,0 chrXIII 407898 . T C 5400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=235;Dels=0.00;FS=5.706;HaplotypeScore=15.8445;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-0.163;QD=22.98;ReadPosRankSum=2.961;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:3,231:235:99:5400,615,0 chrXIII 408001 . A G 4457.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2539;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.51;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4457,504,0 chrXIII 408347 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.7755;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=16.08;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:3699,426,0 chrXIII 408374 . C T 3199 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=12.64;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:3232,357,0 chrXIII 408897 . A G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=101;Dels=0.00;FS=5.643;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.536;QD=20.88;ReadPosRankSum=2.910;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:3,97:101:99:2142,243,0 chrXIII 409225 . A T 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;DP=150;Dels=0.05;FS=11.202;HaplotypeScore=140.5732;MLEAC=1;MLEAF=0.500;MQ=47.32;MQ0=0;MQRankSum=4.052;QD=0.97;ReadPosRankSum=-6.623;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,27:143:99:175,0,644 chrXIII 409543 . T A 2757 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.55;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2790,309,0 chrXIII 409643 . A G 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=3.602;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.976;QD=20.45;ReadPosRankSum=1.669;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1178,135,0 chrXIII 409788 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.01;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1851,201,0 chrXIII 409894 . T C 2672 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.09;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2705,315,0 chrXIII 410079 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.5393;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3700,411,0 chrXIII 410172 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.29;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3550,399,0 chrXIII 410660 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.20;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3508,402,0 chrXIII 410894 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.46;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3801,423,0 chrXIII 411113 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.5928;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.43;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4663,516,0 chrXIII 411358 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=11.6434;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.04;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2979,333,0 chrXIII 411474 . G T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.544;DP=143;Dels=0.03;FS=196.469;HaplotypeScore=17.4768;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=1.483;QD=0.09;ReadPosRankSum=-7.009;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,51:139:42:42,0,870 chrXIII 412303 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.97;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2955,339,0 chrXIII 412378 . T A 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.125;QD=20.77;ReadPosRankSum=1.677;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2650,282,0 chrXIII 412382 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.02;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2555,279,0 chrXIII 412745 . C T 4693.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0065;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.07;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4693,516,0 chrXIII 412783 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.53;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4168,471,0 chrXIII 412878 . C G 3559.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.18;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3559,405,0 chrXIII 413129 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.58;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3264,357,0 chrXIII 413447 . C T 2778 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.43;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2811,303,0 chrXIII 413502 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=3.274;HaplotypeScore=7.3947;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.707;QD=21.15;ReadPosRankSum=1.681;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2952,339,0 chrXIII 413527 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.2139;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.88;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2724,306,0 chrXIII 414203 . C A 2840 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.28;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2873,315,0 chrXIII 414299 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2652,294,0 chrXIII 414447 . C T 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.069;QD=25.04;ReadPosRankSum=-0.208;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2537,256,0 chrXIII 414669 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3055,333,0 chrXIII 414719 . T C 2673 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2706,306,0 chrXIII 415412 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.15;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2441,264,0 chrXIII 415433 . T C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=94;Dels=0.00;FS=7.936;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.406;QD=19.37;ReadPosRankSum=2.345;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1854,213,0 chrXIII 415438 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=20.35;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1926,207,0 chrXIII 415454 . G T 1763 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.16;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1796,198,0 chrXIII 415508 . A G 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=93;Dels=0.00;FS=2.926;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.245;QD=21.41;ReadPosRankSum=2.396;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:2024,231,0 chrXIII 415535 . G T 1996 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.48;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2029,228,0 chrXIII 415566 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.650;QD=22.60;ReadPosRankSum=1.650;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1931,222,0 chrXIII 415772 . T G 2309 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.09;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2342,270,0 chrXIII 416104 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.5239;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=21.75;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3936,435,0 chrXIII 416114 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.412;QD=18.54;ReadPosRankSum=2.397;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3485,405,0 chrXIII 416124 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.74;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3466,381,0 chrXIII 416274 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.4200;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.22;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4286,489,0 chrXIII 416283 . C T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.4594;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.98;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4176,450,0 chrXIII 416781 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.36;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2719,297,0 chrXIII 416929 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.80;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2928,321,0 chrXIII 416970 . A C 2518 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.52;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2551,294,0 chrXIII 417054 . C A 2353 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=21.01;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2386,267,0 chrXIII 417062 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.28;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2345,264,0 chrXIII 417114 . C A 2384 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.91;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2417,270,0 chrXIII 417126 . A C 2348 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.24;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2381,270,0 chrXIII 417249 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.72;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2334,264,0 chrXIII 417300 . A G 2224 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.69;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2257,258,0 chrXIII 417524 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.09;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2132,228,0 chrXIII 418982 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.72;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2669,294,0 chrXIII 419424 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.68;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2701,303,0 chrXIII 419643 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.50;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3406,366,0 chrXIII 419667 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.12;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3546,384,0 chrXIII 419718 . C A 2970 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3003,333,0 chrXIII 419976 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2589,285,0 chrXIII 420051 . G C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.31;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3356,372,0 chrXIII 420098 . A T 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0744;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.135;QD=22.50;ReadPosRankSum=1.683;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3205,345,0 chrXIII 420310 . A G 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.536;QD=20.13;ReadPosRankSum=2.284;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1845,207,0 chrXIII 420348 . A G 2008 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.12;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2041,237,0 chrXIII 420356 . G A 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=4.288;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-1.528;QD=20.08;ReadPosRankSum=-1.596;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2101,231,0 chrXIII 420528 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=25.62;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2390,252,0 chrXIII 420568 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=21.27;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1586,177,0 chrXIII 420683 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=22.30;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2218,240,0 chrXIII 420689 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=21.36;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2041,222,0 chrXIII 420702 . G C 1607 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=18.47;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1640,195,0 chrXIII 420718 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=19.68;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1548,171,0 chrXIII 420786 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=49.7730;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=22.45;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1223,132,0 chrXIII 420832 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=24.68;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1563,171,0 chrXIII 420892 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=25.01;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1884,210,0 chrXIII 420966 . T G 751 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=21.46;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:784,90,0 chrXIII 420982 . G A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DP=26;Dels=0.00;FS=6.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.57;MQ0=0;MQRankSum=1.613;QD=0.77;ReadPosRankSum=3.317;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:20,6:26:50:50,0,358 chrXIII 421039 . G A 343 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=18.05;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:42:376,42,0 chrXIII 421102 . A T 421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;MQRankSum=-0.578;QD=20.05;ReadPosRankSum=1.569;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,20:21:48:454,48,0 chrXIII 421225 . T C 467 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.30;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:57:500,57,0 chrXIII 421243 . T C 559 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.28;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:66:592,66,0 chrXIII 421309 . A T 341 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=13.64;SB=-7.066e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:42:374,42,0 chrXIII 421314 . A G 382 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=15.28;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:48:415,48,0 chrXIII 421535 . G T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.77;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3423,381,0 chrXIII 421708 . A C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=195;Dels=0.00;FS=2.900;HaplotypeScore=15.8978;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.374;QD=20.15;ReadPosRankSum=2.336;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3930,459,0 chrXIII 421952 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.976;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.960;QD=21.89;ReadPosRankSum=0.169;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,107:111:99:2463,279,0 chrXIII 422261 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=3.485;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.585;QD=22.26;ReadPosRankSum=1.684;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3262,375,0 chrXIII 422449 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.64;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3569,402,0 chrXIII 422548 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.479;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.259;QD=21.00;ReadPosRankSum=1.678;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2700,309,0 chrXIII 422714 . T C 3833.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.03;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3833,438,0 chrXIII 422731 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.851;QD=21.62;ReadPosRankSum=1.691;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3675,414,0 chrXIII 423156 . T C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.2439;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.792;QD=20.87;ReadPosRankSum=1.683;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2996,342,0 chrXIII 423160 . T G 3012 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.2104;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.06;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3045,351,0 chrXIII 423169 . A G 2936 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=20.97;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2969,339,0 chrXIII 423520 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.60;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3247,369,0 chrXIII 423534 . A G 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=4.502;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.111;QD=18.35;ReadPosRankSum=1.683;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2638,309,0 chrXIII 423541 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.96;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2709,306,0 chrXIII 423603 . A T 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.096;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.826;QD=20.93;ReadPosRankSum=1.709;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3236,357,0 chrXIII 423811 . T C 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=3.281;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.221;QD=23.68;ReadPosRankSum=1.686;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3529,396,0 chrXIII 424537 . A G 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=175;Dels=0.00;FS=3.267;HaplotypeScore=15.8205;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.274;QD=22.43;ReadPosRankSum=1.712;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3926,444,0 chrXIII 424897 . T G 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.339;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-1.503;QD=17.90;ReadPosRankSum=1.686;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2754,324,0 chrXIII 425034 . A T 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=133;Dels=0.04;FS=0.000;HaplotypeScore=19.1592;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-1.651;QD=14.12;ReadPosRankSum=1.705;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1911,210,0 chrXIII 425035 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=18.3705;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=13.46;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1836,207,0 chrXIII 425123 . A T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4168;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.28;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3468,381,0 chrXIII 425138 . A G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=4.491;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.321;QD=20.59;ReadPosRankSum=1.655;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2813,321,0 chrXIII 425898 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.49;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3359,381,0 chrXIII 425957 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=130;Dels=0.00;FS=3.079;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.705;QD=21.12;ReadPosRankSum=1.678;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2778,324,0 chrXIII 426074 . A G 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=69.8092;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.782;QD=17.46;ReadPosRankSum=2.629;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1412,143,0 chrXIII 426159 . A C 2108 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.23;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2141,237,0 chrXIII 426219 . T A 1058 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=49.1066;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=15.56;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1091,123,0 chrXIII 426590 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=107;Dels=0.00;FS=3.052;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.412;QD=22.71;ReadPosRankSum=1.666;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2463,276,0 chrXIII 426949 . C A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.43;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4202,471,0 chrXIII 427114 . C T 5909.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.73;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5909,642,0 chrXIII 428830 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=3.007;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.249;QD=19.42;ReadPosRankSum=2.417;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3005,345,0 chrXIII 428833 . A T 3106 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.91;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3139,351,0 chrXIII 429465 . G C 4710.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.22;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4710,534,0 chrXIII 429559 . G A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4513,498,0 chrXIII 429941 . A T 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=140;Dels=0.00;FS=2.854;HaplotypeScore=13.6259;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.150;QD=21.91;ReadPosRankSum=2.397;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3101,345,0 chrXIII 430167 . C A 3079 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.50;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3112,339,0 chrXIII 430346 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.07;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3538,381,0 chrXIII 430438 . A G 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=3.066;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.600;QD=21.10;ReadPosRankSum=1.577;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3292,378,0 chrXIII 430487 . G A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.61;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3754,426,0 chrXIII 430634 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.52;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,194:199:99:4084,444,0 chrXIII 430637 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.12;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3964,456,0 chrXIII 430646 . C T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0253;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=20.88;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4175,453,0 chrXIII 430856 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.08;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4062,438,0 chrXIII 430923 . G T 2477 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.82;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2510,282,0 chrXIII 430948 . G C 1670 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.65;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1703,195,0 chrXIII 431202 . C T 2006 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.60;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2039,222,0 chrXIII 431284 . A C 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=88;Dels=0.00;FS=3.384;HaplotypeScore=9.3755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.509;QD=20.73;ReadPosRankSum=1.528;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,84:88:99:1857,210,0 chrXIII 431689 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.64;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3451,381,0 chrXIII 431841 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.35;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2434,267,0 chrXIII 432019 . T A 2232 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.01;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2265,255,0 chrXIII 432613 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.35;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2737,303,0 chrXIII 432625 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.28;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2693,291,0 chrXIII 432667 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=22.8632;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.67;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2759,306,0 chrXIII 432966 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.01;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2071,228,0 chrXIII 433010 . T A 2405 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.48;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2438,270,0 chrXIII 433052 . T A 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=3.979;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.677;QD=19.56;ReadPosRankSum=1.704;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2498,285,0 chrXIII 433082 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4181;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.02;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2555,276,0 chrXIII 433201 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=23.84;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2822,312,0 chrXIII 433223 . A G 2666 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=20.99;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2699,312,0 chrXIII 433274 . T C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=145;Dels=0.00;FS=5.888;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-2.966;QD=20.34;ReadPosRankSum=2.938;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2982,342,0 chrXIII 433291 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=19.69;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3144,345,0 chrXIII 433318 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=17.08;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3056,330,0 chrXIII 433376 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=12.24;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2236,243,0 chrXIII 433409 . A C 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;MQRankSum=-1.001;QD=14.21;ReadPosRankSum=1.409;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:2363,270,0 chrXIII 433422 . A G 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;MQRankSum=0.079;QD=15.16;ReadPosRankSum=1.709;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2353,270,0 chrXIII 433474 . G A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1526;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=22.63;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3439,381,0 chrXIII 433519 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=23.30;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4054,456,0 chrXIII 433544 . G T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=23.72;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4389,480,0 chrXIII 433720 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=113;Dels=0.00;FS=6.135;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.072;QD=22.88;ReadPosRankSum=2.937;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:3,109:113:99:2619,300,0 chrXIII 433878 . A G 2092 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.92;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2125,249,0 chrXIII 433952 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.94;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2271,252,0 chrXIII 434151 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3003,327,0 chrXIII 434234 . G A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.17;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4240,462,0 chrXIII 434413 . G A 5438.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.85;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5438,597,0 chrXIII 434450 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.60;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4240,480,0 chrXIII 434538 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.9414;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.23;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,227:227:99:3912,429,0 chrXIII 434776 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.65;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2598,279,0 chrXIII 434927 . A T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7692;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.85;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3355,366,0 chrXIII 434958 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.94;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3903,420,0 chrXIII 435813 . A G 3949.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.65;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3949,450,0 chrXIII 436121 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.24;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1990,219,0 chrXIII 436151 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.87;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1807,204,0 chrXIII 436171 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=83.1197;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=19.89;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1942,213,0 chrXIII 436540 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2040,234,0 chrXIII 436595 . A C 2560 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2593,291,0 chrXIII 436769 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.74;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3048,333,0 chrXIII 437012 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.6584;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.417;QD=24.00;ReadPosRankSum=1.712;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4248,477,0 chrXIII 437041 . C T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.12;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4508,504,0 chrXIII 437167 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=3.034;HaplotypeScore=9.5962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.916;QD=23.27;ReadPosRankSum=2.403;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3676,417,0 chrXIII 437248 . T A 3202 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.64;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3235,354,0 chrXIII 437323 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=174;Dels=0.02;FS=3.018;HaplotypeScore=17.9308;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.932;QD=22.30;ReadPosRankSum=2.363;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3880,435,0 chrXIII 437945 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.734;DP=169;Dels=0.00;FS=11.398;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.255;QD=21.47;ReadPosRankSum=3.772;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:5,164:169:99:3629,408,0 chrXIII 438469 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.8723;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.81;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4447,492,0 chrXIII 438807 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.18;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2737,300,0 chrXIII 438816 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.70;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2576,291,0 chrXIII 438970 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.97;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3721,417,0 chrXIII 439214 . A G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=147;Dels=0.00;FS=3.038;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.978;QD=18.60;ReadPosRankSum=2.416;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2767,318,0 chrXIII 439294 . A T 2770 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.22;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2803,315,0 chrXIII 439396 . T C 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=191;Dels=0.00;FS=2.816;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.019;QD=22.41;ReadPosRankSum=2.385;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4280,483,0 chrXIII 439839 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=173;Dels=0.00;FS=9.974;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.517;QD=21.97;ReadPosRankSum=2.936;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3800,444,0 chrXIII 439888 . T A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.99;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4367,474,0 chrXIII 439990 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=155;Dels=0.00;FS=6.222;HaplotypeScore=16.1872;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.020;QD=22.28;ReadPosRankSum=2.385;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3453,393,0 chrXIII 440197 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.46;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3743,420,0 chrXIII 440349 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=3.379;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.423;QD=24.13;ReadPosRankSum=1.712;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4150,468,0 chrXIII 440381 . A G 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.267;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-1.688;QD=19.70;ReadPosRankSum=1.710;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3126,351,0 chrXIII 440388 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.89;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3167,342,0 chrXIII 440451 . A G 2856 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.9156;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.70;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2889,333,0 chrXIII 440514 . C A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=22.65;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3330,372,0 chrXIII 440533 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=156;Dels=0.00;FS=13.653;HaplotypeScore=4.3523;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.097;QD=19.02;ReadPosRankSum=3.368;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:4,150:156:99:3000,342,0 chrXIII 440535 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.7750;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=19.18;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3006,345,0 chrXIII 440546 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=151;Dels=0.00;FS=6.024;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=1.812;QD=18.62;ReadPosRankSum=2.953;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:2845,333,0 chrXIII 440602 . G C 2318 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.04;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2351,276,0 chrXIII 440792 . T C 3088 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5126;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.22;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3121,354,0 chrXIII 441110 . T G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3603,420,0 chrXIII 441637 . A T 3108 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.9365;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.58;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3141,345,0 chrXIII 441694 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.77;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3392,399,0 chrXIII 442128 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.86;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1910,210,0 chrXIII 442326 . A T 271.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DP=128;Dels=0.00;FS=19.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.71;MQ0=0;MQRankSum=-2.664;QD=2.12;ReadPosRankSum=-8.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,31:128:99:301,0,681 chrXIII 442338 . C T 1167 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=10.33;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1200,135,0 chrXIII 442504 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=21.97;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2494,270,0 chrXIII 442723 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.75;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3264,357,0 chrXIII 442838 . A C 3645.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.5424;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.78;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3645,411,0 chrXIII 442933 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.1983;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.71;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3538,396,0 chrXIII 443187 . C A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3312,366,0 chrXIII 443477 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.45;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3619,408,0 chrXIII 443849 . T G 5200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=269;Dels=0.00;FS=3.849;HaplotypeScore=14.3628;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.177;QD=19.33;ReadPosRankSum=1.719;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:1,261:269:99:5200,597,0 chrXIII 443864 . T A 5368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=257;Dels=0.00;FS=7.635;HaplotypeScore=10.6589;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.750;QD=20.89;ReadPosRankSum=2.430;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5368,585,0 chrXIII 443942 . G A 5433.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=23.02;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5433,591,0 chrXIII 443954 . G C 4690.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.04;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,227:234:99:4690,543,0 chrXIII 443966 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.01;FS=0.000;HaplotypeScore=11.7830;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.99;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4378,495,0 chrXIII 444110 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.1813;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=24.01;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4153,447,0 chrXIII 444158 . T C 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=4.019;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=-0.697;QD=19.05;ReadPosRankSum=1.711;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3195,375,0 chrXIII 444164 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=0.653;QD=19.10;ReadPosRankSum=1.691;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3241,366,0 chrXIII 444299 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.33;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2443,264,0 chrXIII 444677 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.4491;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.30;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4141,486,0 chrXIII 444908 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.45;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3789,417,0 chrXIII 445016 . A G 2070 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2103,240,0 chrXIII 445293 . C T 2257 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2290,255,0 chrXIII 445712 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.061;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.551;QD=21.77;ReadPosRankSum=1.712;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3766,432,0 chrXIII 446574 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.0300;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.02;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3913,444,0 chrXIII 446761 . T C 3163 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.4517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.52;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3196,381,0 chrXIII 446935 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.47;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3521,390,0 chrXIII 447184 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.43;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3300,387,0 chrXIII 447488 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=185;Dels=0.00;FS=2.573;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.310;QD=21.37;ReadPosRankSum=2.962;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:3953,456,0 chrXIII 447619 . C A 3097 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.4821;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.21;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3130,345,0 chrXIII 448333 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.33;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2656,300,0 chrXIII 448334 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=130;Dels=0.00;FS=3.829;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.839;QD=19.60;ReadPosRankSum=1.218;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2581,300,0 chrXIII 448761 . A C 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=205;Dels=0.00;FS=2.906;HaplotypeScore=9.0670;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.425;QD=20.94;ReadPosRankSum=2.402;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4292,498,0 chrXIII 449175 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.503;QD=22.64;ReadPosRankSum=1.710;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3509,408,0 chrXIII 449412 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=186;Dels=0.00;FS=6.830;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.459;QD=22.92;ReadPosRankSum=2.291;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4263,498,0 chrXIII 450562 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.13;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3540,393,0 chrXIII 450640 . A G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=111;Dels=0.00;FS=3.032;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.964;QD=19.87;ReadPosRankSum=2.383;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2239,264,0 chrXIII 451369 . T C 3067 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.92;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3100,360,0 chrXIII 451375 . A C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.374;QD=20.91;ReadPosRankSum=1.684;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3065,348,0 chrXIII 451494 . T C 2451 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.95;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2484,282,0 chrXIII 451502 . T C 2345 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=19.87;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2378,273,0 chrXIII 451971 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.95;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4360,486,0 chrXIII 452031 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.996;QD=20.94;ReadPosRankSum=1.710;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3372,384,0 chrXIII 452181 . C T 4678.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=21.2188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4678,510,0 chrXIII 453503 . T G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.10;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3426,393,0 chrXIII 453738 . T G 2578 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.53;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2611,306,0 chrXIII 453745 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.22;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2664,297,0 chrXIII 454197 . C A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.59;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4156,462,0 chrXIII 454515 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=3.041;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.264;QD=18.73;ReadPosRankSum=2.313;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2393,273,0 chrXIII 454527 . T C 2473 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=18.46;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2506,285,0 chrXIII 454966 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3743,423,0 chrXIII 455004 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=3.632;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.455;QD=19.87;ReadPosRankSum=1.709;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3013,336,0 chrXIII 455073 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.4403;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.84;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:3862,441,0 chrXIII 455166 . T C 5292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=240;Dels=0.00;FS=2.902;HaplotypeScore=17.2101;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.833;QD=22.05;ReadPosRankSum=2.388;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5292,612,0 chrXIII 455319 . T C 4773.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.0195;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.50;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4773,558,0 chrXIII 455603 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1615,183,0 chrXIII 455851 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.48;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2163,237,0 chrXIII 456415 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5968;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.22;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4221,462,0 chrXIII 456517 . A G 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.262;QD=22.02;ReadPosRankSum=1.706;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2962,315,0 chrXIII 456535 . A T 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.428;QD=21.60;ReadPosRankSum=1.685;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3230,351,0 chrXIII 456718 . T G 2538 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.26;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2571,288,0 chrXIII 456970 . C T 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4557;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.199;QD=22.75;ReadPosRankSum=1.166;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2399,249,0 chrXIII 457507 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2915,315,0 chrXIII 457932 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=22.08;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2970,327,0 chrXIII 458051 . A G 3115 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.5232;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.78;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3148,354,0 chrXIII 458330 . A G 4638.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.67;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4638,525,0 chrXIII 458366 . C A 4415.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.54;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4415,480,0 chrXIII 458370 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.91;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:4009,444,0 chrXIII 458446 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.26;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4630,510,0 chrXIII 458464 . C T 5312.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.00;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5312,585,0 chrXIII 458513 . T G 5774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=261;Dels=0.00;FS=8.008;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.637;QD=22.12;ReadPosRankSum=3.401;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:4,257:261:99:5774,657,0 chrXIII 459192 . G T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.85;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3269,351,0 chrXIII 459200 . T C 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.925;QD=20.50;ReadPosRankSum=1.613;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3046,345,0 chrXIII 459295 . G C 2477 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.4808;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2510,285,0 chrXIII 459348 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.17;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2700,309,0 chrXIII 459508 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=0.680;QD=22.87;ReadPosRankSum=1.601;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1840,207,0 chrXIII 459995 . A C 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.102;QD=21.24;ReadPosRankSum=1.674;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2582,291,0 chrXIII 460145 . T G 3068 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.61;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3101,354,0 chrXIII 460255 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=24.76;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3541,387,0 chrXIII 460498 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=156;Dels=0.00;FS=3.785;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.283;QD=20.58;ReadPosRankSum=1.709;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3243,363,0 chrXIII 460499 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.99;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3268,366,0 chrXIII 460522 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.59;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3121,348,0 chrXIII 460618 . T C 3131 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.02;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3164,363,0 chrXIII 460648 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.2781;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.853;QD=22.42;ReadPosRankSum=1.706;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3060,342,0 chrXIII 460662 . G T 3052 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.12;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3085,339,0 chrXIII 460753 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.26;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2370,270,0 chrXIII 461207 . A T 3140 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.27;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3173,345,0 chrXIII 461290 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.95;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2689,291,0 chrXIII 461498 . G C 1952 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.33;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1985,225,0 chrXIII 461509 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.47;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2058,231,0 chrXIII 461567 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.24;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2986,330,0 chrXIII 462286 . T A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.21;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3775,426,0 chrXIII 462388 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.45;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3704,411,0 chrXIII 462622 . C T 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.922;QD=21.77;ReadPosRankSum=0.140;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2907,289,0 chrXIII 462773 . A T 2859 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.24;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2892,318,0 chrXIII 462945 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.14;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2393,258,0 chrXIII 463073 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=23.70;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2119,231,0 chrXIII 463090 . T C 1987 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=22.33;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2020,225,0 chrXIII 463170 . A C 663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.704;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=2.286;QD=13.81;ReadPosRankSum=0.105;SB=-2.299e+01 GT:AD:DP:GQ:PL 1/1:7,40:47:84:696,84,0 chrXIII 463171 . C G 667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.599;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=2.465;QD=14.19;ReadPosRankSum=0.224;SB=-2.299e+01 GT:AD:DP:GQ:PL 1/1:7,40:47:81:700,81,0 chrXIII 463204 . C A 595 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.922;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;MQRankSum=1.554;QD=14.87;ReadPosRankSum=1.104;SB=3.05 GT:AD:DP:GQ:PL 1/1:5,35:40:69:628,69,0 chrXIII 463247 . C G 714 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=100;Dels=0.00;FS=275.340;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;MQRankSum=-0.428;QD=7.14;ReadPosRankSum=7.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:63,37:100:84:747,84,0 chrXIII 463344 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.08;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1513,174,0 chrXIII 463455 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=5.013;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;MQRankSum=-1.482;QD=23.41;ReadPosRankSum=1.701;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2632,294,0 chrXIII 463646 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.94;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1722,198,0 chrXIII 463745 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8714;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.62;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1936,210,0 chrXIII 463806 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.03;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1377,159,0 chrXIII 463832 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.41;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1403,159,0 chrXIII 464030 . A T 2193 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.64;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2226,243,0 chrXIII 464756 . A G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9367;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-1.672;QD=22.41;ReadPosRankSum=1.643;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2633,294,0 chrXIII 464784 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.81;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2496,279,0 chrXIII 464785 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.99;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2539,279,0 chrXIII 464976 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.68;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2723,297,0 chrXIII 465028 . C A 2308 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.37;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2341,267,0 chrXIII 465037 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.34;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2468,270,0 chrXIII 465163 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.61;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2520,273,0 chrXIII 465295 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.02;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2450,270,0 chrXIII 465435 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;QD=20.50;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2801,315,0 chrXIII 465545 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=20.33;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2168,234,0 chrXIII 465549 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.56;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2204,249,0 chrXIII 465675 . A T 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.786;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.976;QD=22.59;ReadPosRankSum=1.669;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2518,273,0 chrXIII 465869 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.20;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2098,228,0 chrXIII 465931 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.96;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2485,270,0 chrXIII 466308 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=19.6071;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.47;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4015,435,0 chrXIII 466377 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3181;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.75;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3389,366,0 chrXIII 466416 . C A 3166 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.80;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3199,351,0 chrXIII 467764 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2552,285,0 chrXIII 467817 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2515,276,0 chrXIII 467994 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.32;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3526,396,0 chrXIII 468051 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.62;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2342,261,0 chrXIII 468156 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.85;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1993,237,0 chrXIII 468328 . G A 600 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.43;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:28:69:633,69,0 chrXIII 468494 . T C 1166 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.20;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1199,138,0 chrXIII 468499 . A T 1187 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.12;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1220,135,0 chrXIII 468637 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.42;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1930,207,0 chrXIII 468937 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.20;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1541,174,0 chrXIII 469276 . A G 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.866;QD=19.40;ReadPosRankSum=1.651;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2516,291,0 chrXIII 469297 . T C 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.761;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.687;QD=19.74;ReadPosRankSum=1.705;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2540,291,0 chrXIII 469320 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.77;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2754,297,0 chrXIII 469459 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=123;Dels=0.00;FS=3.119;HaplotypeScore=8.9480;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-1.703;QD=22.35;ReadPosRankSum=1.703;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2782,318,0 chrXIII 469503 . T G 2751 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=22.37;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2784,315,0 chrXIII 469513 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.08;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3034,327,0 chrXIII 469552 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.329;QD=20.55;ReadPosRankSum=1.672;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2417,276,0 chrXIII 470613 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=178;Dels=0.00;FS=7.100;HaplotypeScore=11.8969;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.077;QD=22.14;ReadPosRankSum=2.380;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3941,459,0 chrXIII 470697 . A G 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=170;Dels=0.00;FS=3.018;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.243;QD=22.83;ReadPosRankSum=2.420;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3881,441,0 chrXIII 470916 . T C 3168 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.05;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3201,369,0 chrXIII 471264 . T G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7893;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3496,399,0 chrXIII 472484 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.4066;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.23;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3535,405,0 chrXIII 473000 . G T 1810 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.11;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1843,201,0 chrXIII 473006 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.25;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1672,192,0 chrXIII 473172 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=122;Dels=0.00;FS=3.838;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.043;QD=21.26;ReadPosRankSum=1.675;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2627,309,0 chrXIII 473320 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.54;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3719,429,0 chrXIII 473594 . T A 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.133;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4356;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.155;QD=19.09;ReadPosRankSum=1.219;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3144,335,0 chrXIII 473599 . T G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=159;Dels=0.00;FS=8.200;HaplotypeScore=10.4036;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=1.063;QD=19.70;ReadPosRankSum=2.418;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,154:159:99:3166,357,0 chrXIII 473747 . T A 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.290;QD=22.74;ReadPosRankSum=1.616;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3388,384,0 chrXIII 474052 . G A 5052.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.65;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5052,549,0 chrXIII 474399 . T C 3209 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3242,366,0 chrXIII 474441 . G T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.68;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3253,360,0 chrXIII 474682 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.39;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2250,246,0 chrXIII 474721 . G T 1918 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.85;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1951,213,0 chrXIII 474740 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.45;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2283,267,0 chrXIII 474893 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2387,270,0 chrXIII 474938 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3130;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.63;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3133,357,0 chrXIII 475013 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.22;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2982,336,0 chrXIII 475160 . C A 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.282;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.9501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.213;QD=19.61;ReadPosRankSum=0.099;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3230,331,0 chrXIII 475252 . G A 3076 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.7482;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.03;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3109,342,0 chrXIII 475855 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.60;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1886,213,0 chrXIII 476241 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.97;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4203,456,0 chrXIII 476482 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.53;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3672,417,0 chrXIII 476503 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.1355;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.67;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3598,399,0 chrXIII 476647 . A G 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.982;QD=18.90;ReadPosRankSum=1.622;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3057,354,0 chrXIII 476659 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.27;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3365,372,0 chrXIII 476788 . C G 4142.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.15;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4142,468,0 chrXIII 476908 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.1459;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.85;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:2813,312,0 chrXIII 476920 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=174;Dels=0.00;FS=9.413;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.567;QD=16.90;ReadPosRankSum=2.913;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:2973,345,0 chrXIII 476980 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.57;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3582,402,0 chrXIII 476994 . A G 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.208;QD=21.63;ReadPosRankSum=1.712;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3720,414,0 chrXIII 477051 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.00;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3233,381,0 chrXIII 477118 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.43;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3407,384,0 chrXIII 477780 . A G 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=4.551;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.170;QD=23.43;ReadPosRankSum=1.710;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3608,408,0 chrXIII 478087 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=21.3239;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.40;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4087,453,0 chrXIII 478297 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=130;Dels=0.00;FS=2.993;HaplotypeScore=9.4213;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.009;QD=20.86;ReadPosRankSum=2.393;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2745,312,0 chrXIII 478448 . T C 2628 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.90;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2661,297,0 chrXIII 478576 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3299,360,0 chrXIII 478638 . T G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.00;FS=2.973;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.240;QD=22.01;ReadPosRankSum=2.291;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2784,318,0 chrXIII 478673 . A G 2934 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.0943;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.57;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2967,333,0 chrXIII 479146 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.661;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.373;QD=22.20;ReadPosRankSum=1.666;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3530,399,0 chrXIII 479249 . C T 4576.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.89;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4576,510,0 chrXIII 479345 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=3.529;HaplotypeScore=10.1357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.455;QD=20.73;ReadPosRankSum=1.667;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3316,393,0 chrXIII 479746 . G C 3788.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.3638;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.52;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3788,444,0 chrXIII 480327 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=22.57;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3837,438,0 chrXIII 480404 . A G 3167 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.84;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3200,366,0 chrXIII 480430 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=22.01;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2410,264,0 chrXIII 480440 . A C 2150 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=19.91;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2183,249,0 chrXIII 480483 . A G 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;MQRankSum=-1.705;QD=18.01;ReadPosRankSum=2.359;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1996,234,0 chrXIII 480495 . C G 1763 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=19.37;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1796,201,0 chrXIII 480496 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=19.36;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1795,204,0 chrXIII 480509 . A T 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;MQRankSum=-0.232;QD=15.95;ReadPosRankSum=1.696;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1580,177,0 chrXIII 480545 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=19.98;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1691,186,0 chrXIII 480549 . G A 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=-0.878;QD=20.42;ReadPosRankSum=1.685;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1524,171,0 chrXIII 480592 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=21.08;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1150,126,0 chrXIII 480601 . C T 939 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=22.36;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:972,105,0 chrXIII 480711 . C A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=0.73;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:51,6,0 chrXIII 480834 . A G 1190 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.7627;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.52;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:58:99:1223,141,0 chrXIII 481004 . T G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.104;QD=21.11;ReadPosRankSum=1.703;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2503,294,0 chrXIII 481048 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.68;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2237,246,0 chrXIII 481051 . G C 2049 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=17.07;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2082,240,0 chrXIII 481063 . A G 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.155;QD=16.44;ReadPosRankSum=1.706;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2285,258,0 chrXIII 481103 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=16.89;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2246,243,0 chrXIII 481286 . T A 2096 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.78;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2129,234,0 chrXIII 481511 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.54;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2670,291,0 chrXIII 481534 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.56;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2793,303,0 chrXIII 481556 . G C 2888 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.48;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2921,333,0 chrXIII 481610 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.52;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2852,321,0 chrXIII 481632 . T A 2726 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.90;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2759,312,0 chrXIII 481647 . G T 2573 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.75;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2606,294,0 chrXIII 481735 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.61;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3495,390,0 chrXIII 481766 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=135;Dels=0.00;FS=4.360;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.939;QD=22.75;ReadPosRankSum=1.679;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,130:135:99:3104,354,0 chrXIII 481834 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7668;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.92;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3104,336,0 chrXIII 481922 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=24.21;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3156,357,0 chrXIII 482208 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.82;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3859,435,0 chrXIII 482238 . A C 3908.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.12;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3908,450,0 chrXIII 482376 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.48;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3062,348,0 chrXIII 482500 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.46;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3801,417,0 chrXIII 482522 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.48;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3652,414,0 chrXIII 482985 . A T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3508,390,0 chrXIII 483498 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=24.23;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2553,279,0 chrXIII 485052 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=168;Dels=0.00;FS=6.312;HaplotypeScore=11.6681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.861;QD=22.40;ReadPosRankSum=2.420;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3763,429,0 chrXIII 485130 . G A 4192.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.3951;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.30;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4192,471,0 chrXIII 485305 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.44;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2833,306,0 chrXIII 485712 . G A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.54;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4292,492,0 chrXIII 486148 . A C 1273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.280;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.080;QD=18.45;ReadPosRankSum=1.682;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1306,147,0 chrXIII 486437 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.19;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1595,177,0 chrXIII 486464 . T C 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.075;QD=19.00;ReadPosRankSum=1.632;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1344,153,0 chrXIII 486465 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.03;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1375,153,0 chrXIII 487393 . T C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.189;QD=22.10;ReadPosRankSum=1.651;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2884,327,0 chrXIII 487573 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.15;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3179,345,0 chrXIII 487606 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.6287;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.752;QD=21.72;ReadPosRankSum=1.709;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3301,378,0 chrXIII 487633 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.66;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3109,348,0 chrXIII 487795 . A G 2367 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.7203;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.33;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2400,273,0 chrXIII 487831 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.99;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2447,276,0 chrXIII 489569 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.18;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3305,378,0 chrXIII 489786 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=14.80;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2549,276,0 chrXIII 490109 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.62;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3082,345,0 chrXIII 490393 . T C 2263 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2296,261,0 chrXIII 490598 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.49;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4409,501,0 chrXIII 490970 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.13;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2886,324,0 chrXIII 491108 . T C 2299 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.17;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2332,270,0 chrXIII 491129 . T C 2180 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.19;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2213,249,0 chrXIII 491444 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.13;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3033,330,0 chrXIII 491458 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.951;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.262;QD=21.09;ReadPosRankSum=2.416;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3154,357,0 chrXIII 491569 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2738,300,0 chrXIII 491864 . T C 2245 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.60;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2278,258,0 chrXIII 492021 . T C 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=86;Dels=0.00;FS=3.059;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.014;QD=19.08;ReadPosRankSum=2.393;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1674,192,0 chrXIII 492032 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.02;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1688,183,0 chrXIII 492116 . T A 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.407;QD=24.60;ReadPosRankSum=1.696;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2395,261,0 chrXIII 492266 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=25.29;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2815,303,0 chrXIII 492323 . T G 1852 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=18.34;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1885,213,0 chrXIII 492349 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=13.79;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1302,144,0 chrXIII 492373 . T A 1180 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=10.54;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1213,135,0 chrXIII 492376 . T C 1084 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;MQRankSum=0.894;QD=10.23;ReadPosRankSum=2.380;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1117,129,0 chrXIII 492378 . G C 1111 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=10.58;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1144,129,0 chrXIII 492387 . T G 1102 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;MQRankSum=-1.732;QD=9.84;ReadPosRankSum=1.701;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1135,129,0 chrXIII 492388 . C T 1166 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=10.32;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1199,132,0 chrXIII 492749 . G T 2750 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2783,309,0 chrXIII 492833 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4713;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.90;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4034,444,0 chrXIII 493188 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.8329;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.18;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3653,402,0 chrXIII 493334 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.7459;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3044,330,0 chrXIII 493391 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=2.914;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=0.307;QD=22.62;ReadPosRankSum=2.344;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3222,369,0 chrXIII 493503 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.4948;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.708;QD=22.56;ReadPosRankSum=1.710;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3632,411,0 chrXIII 493832 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.03;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3283,378,0 chrXIII 494083 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4300;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.46;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2748,303,0 chrXIII 494247 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.28;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3702,417,0 chrXIII 494278 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=2.970;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.157;QD=21.18;ReadPosRankSum=2.320;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3622,408,0 chrXIII 494333 . T G 4191.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8439;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.17;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4191,492,0 chrXIII 494582 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.0416;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.45;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2192,243,0 chrXIII 494727 . T G 1247 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=14.50;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1280,144,0 chrXIII 494731 . T C 985 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=12.47;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1018,117,0 chrXIII 494734 . A G 869 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;MQRankSum=-1.570;QD=13.58;ReadPosRankSum=1.678;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:902,102,0 chrXIII 494735 . G A 898 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;QD=14.48;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:931,102,0 chrXIII 494743 . T A 956 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=4.840;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;MQRankSum=-1.732;QD=14.94;ReadPosRankSum=1.678;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:989,105,0 chrXIII 494785 . A G 939 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=17.39;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:972,111,0 chrXIII 494799 . A G 950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;MQRankSum=-0.173;QD=15.57;ReadPosRankSum=1.675;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:983,114,0 chrXIII 494828 . A G 1245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.674;QD=17.29;ReadPosRankSum=1.684;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1278,147,0 chrXIII 494850 . A C 1267 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.49;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1300,150,0 chrXIII 494953 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=25.25;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3510,390,0 chrXIII 495115 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.686;QD=23.19;ReadPosRankSum=1.709;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3456,396,0 chrXIII 495304 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3956,426,0 chrXIII 495559 . A C 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.930;QD=23.01;ReadPosRankSum=1.713;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4073,459,0 chrXIII 495665 . T C 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.566;DP=153;Dels=0.00;FS=12.014;HaplotypeScore=10.4512;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.836;QD=20.44;ReadPosRankSum=3.792;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:5,148:153:99:3160,380,0 chrXIII 495773 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.5609;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.84;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4672,537,0 chrXIII 496159 . A G 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=110;Dels=0.00;FS=3.032;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.411;QD=22.00;ReadPosRankSum=2.405;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2453,279,0 chrXIII 496520 . T C 1801 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.51;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1834,210,0 chrXIII 496537 . A T 1779 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=20.69;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1812,207,0 chrXIII 496541 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.46;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1713,189,0 chrXIII 496565 . A G 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=3.903;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.628;QD=18.05;ReadPosRankSum=1.640;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2073,243,0 chrXIII 496640 . T G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=183;Dels=0.00;FS=5.232;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=2.289;QD=20.68;ReadPosRankSum=3.316;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:4,178:183:99:3784,447,0 chrXIII 496721 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.65;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4031,450,0 chrXIII 496739 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.55;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3685,417,0 chrXIII 496955 . A T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1904;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.80;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4012,441,0 chrXIII 497568 . G T 4000.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.10;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4000,441,0 chrXIII 497756 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.70;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3276,369,0 chrXIII 497780 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.45;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3346,363,0 chrXIII 497987 . T C 2821 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.0160;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.39;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2854,324,0 chrXIII 498543 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2247,243,0 chrXIII 498573 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.50;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2238,255,0 chrXIII 498745 . C T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.66;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3600,390,0 chrXIII 499915 . A T 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1867;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.662;QD=20.32;ReadPosRankSum=1.648;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2532,273,0 chrXIII 499930 . A T 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=125;Dels=0.00;FS=6.269;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-1.387;QD=18.94;ReadPosRankSum=2.410;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2401,270,0 chrXIII 500107 . C G 3525.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.19;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3525,399,0 chrXIII 500788 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.22;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2028,222,0 chrXIII 500802 . T A 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=87;Dels=0.00;FS=3.014;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.629;QD=20.08;ReadPosRankSum=2.393;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1780,195,0 chrXIII 500943 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.497;QD=23.80;ReadPosRankSum=1.684;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3451,396,0 chrXIII 501019 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.39;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3131,345,0 chrXIII 501084 . T C 2647 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6706;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.22;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2680,306,0 chrXIII 501121 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.93;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3235,363,0 chrXIII 501134 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.29;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3321,378,0 chrXIII 501143 . T G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=166;Dels=0.00;FS=9.033;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.244;QD=20.69;ReadPosRankSum=2.405;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3435,393,0 chrXIII 501451 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.4585;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.397;QD=22.42;ReadPosRankSum=1.648;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2836,318,0 chrXIII 502184 . G C 3839.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.58;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3839,438,0 chrXIII 502941 . A G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=130;Dels=0.00;FS=10.333;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.733;QD=22.97;ReadPosRankSum=2.353;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:2,125:130:99:3019,342,0 chrXIII 503125 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.0440;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.72;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3265,378,0 chrXIII 503136 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.436;DP=173;Dels=0.00;FS=11.607;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.118;QD=19.92;ReadPosRankSum=3.737;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:5,167:173:99:3447,396,0 chrXIII 504072 . C A 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.48;MQ0=105;MQRankSum=-0.365;QD=0.47;ReadPosRankSum=0.365;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:92,23:115:76:84,0,76 chrXIII 504283 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=21.24;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1541,171,0 chrXIII 504447 . C G 1744 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.95;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1777,201,0 chrXIII 504470 . A G 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.687;QD=21.52;ReadPosRankSum=1.687;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1690,195,0 chrXIII 504487 . A G 1541 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.40;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1574,183,0 chrXIII 504623 . A G 1130 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.48;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1163,135,0 chrXIII 504775 . A T 1193 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=19.56;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1226,138,0 chrXIII 504790 . T C 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.073;QD=21.17;ReadPosRankSum=1.683;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1536,171,0 chrXIII 504848 . C G 2221 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.56;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2254,258,0 chrXIII 504884 . A G 2284 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=5;QD=18.42;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2317,276,0 chrXIII 504889 . A G 2378 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=7;QD=19.18;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2411,267,0 chrXIII 505362 . G C 1585 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.9549;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.81;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1618,183,0 chrXIII 505551 . A G 3030 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.49;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3063,363,0 chrXIII 505690 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.70;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2909,321,0 chrXIII 505702 . G T 2936 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.28;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2969,324,0 chrXIII 505942 . T C 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.866;QD=18.01;ReadPosRankSum=1.693;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1636,186,0 chrXIII 505945 . T C 1634 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.96;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1667,186,0 chrXIII 506082 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2622,282,0 chrXIII 506166 . G C 2231 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.45;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2264,255,0 chrXIII 506403 . T C 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=77;Dels=0.00;FS=5.268;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.094;QD=20.18;ReadPosRankSum=1.685;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,73:77:99:1587,186,0 chrXIII 506583 . T C 2129 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.40;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2162,246,0 chrXIII 506838 . T C 2579 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.03;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2612,291,0 chrXIII 507000 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3045,336,0 chrXIII 507502 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.29;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2632,288,0 chrXIII 508047 . G T 328.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.077;DP=153;Dels=0.00;FS=265.474;HaplotypeScore=36.0016;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=-1.306;QD=2.14;ReadPosRankSum=-5.765;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:104,48:153:99:358,0,1583 chrXIII 508576 . T A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.8271;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.45;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4108,459,0 chrXIII 508768 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.93;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3348,375,0 chrXIII 509203 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.40;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4679,519,0 chrXIII 509343 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.27;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3616,402,0 chrXIII 509351 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.33;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3520,387,0 chrXIII 509359 . T A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.54;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3348,372,0 chrXIII 509691 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.94;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2630,303,0 chrXIII 509869 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.349;QD=18.49;ReadPosRankSum=1.672;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3214,366,0 chrXIII 510245 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=156;Dels=0.00;FS=2.683;HaplotypeScore=12.2379;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.325;QD=20.11;ReadPosRankSum=2.402;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3170,360,0 chrXIII 510365 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.93;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3261,381,0 chrXIII 510373 . A T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.69;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3311,357,0 chrXIII 510379 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.296;QD=18.17;ReadPosRankSum=1.689;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2941,333,0 chrXIII 510599 . G T 3124 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.03;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3157,348,0 chrXIII 510876 . A T 8191.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=14.3612;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.47;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,349:349:99:8191,915,0 chrXIII 510947 . A G 6574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=330;Dels=0.00;FS=3.667;HaplotypeScore=21.9969;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.201;QD=19.92;ReadPosRankSum=1.658;SB=-3.668e+03 GT:AD:DP:GQ:PL 1/1:1,327:330:99:6574,744,0 chrXIII 511205 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=21.83;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3624,405,0 chrXIII 511229 . G C 3293.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.96;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3293,375,0 chrXIII 511246 . T A 3056 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.72;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3089,339,0 chrXIII 511256 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.32;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2946,336,0 chrXIII 511632 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.08;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,99:103:99:2101,240,0 chrXIII 512189 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=22.02;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2411,264,0 chrXIII 512193 . A G 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=6.584;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-0.911;QD=20.85;ReadPosRankSum=2.402;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2201,255,0 chrXIII 512244 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=18.69;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1603,189,0 chrXIII 512254 . C A 1602 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=17.23;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1635,183,0 chrXIII 512272 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=19.83;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2314,267,0 chrXIII 512343 . G T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=18.3755;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=23.82;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4026,444,0 chrXIII 512447 . A T 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=4.519;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;MQRankSum=-0.093;QD=19.20;ReadPosRankSum=1.670;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3239,354,0 chrXIII 512449 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=18.11;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3003,345,0 chrXIII 512520 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=4.570;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;MQRankSum=-0.543;QD=15.85;ReadPosRankSum=1.712;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2712,318,0 chrXIII 512540 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=141.7567;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=15.37;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3060,330,0 chrXIII 512558 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=3.511;HaplotypeScore=2.3017;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;MQRankSum=-0.875;QD=11.93;ReadPosRankSum=1.715;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:2442,279,0 chrXIII 512809 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=20.78;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3345,369,0 chrXIII 512918 . C A 1737 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=19.30;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1770,201,0 chrXIII 512919 . C G 1736 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=19.08;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1769,201,0 chrXIII 512964 . A G 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=98;Dels=0.00;FS=9.815;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;MQRankSum=0.239;QD=16.20;ReadPosRankSum=2.274;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1621,189,0 chrXIII 513001 . C G 857 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=10.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:890,105,0 chrXIII 513020 . A G 864 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.31;MQ0=0;QD=9.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:897,108,0 chrXIII 513030 . G C 602 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=7.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:75:635,75,0 chrXIII 513045 . G C 451 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=0;QD=6.09;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:57:484,57,0 chrXIII 513049 . C T 497 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;QD=6.81;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:60:530,60,0 chrXIII 513051 . A T 484 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;QD=6.63;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:60:517,60,0 chrXIII 513061 . G A 519 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=6.74;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:63:552,63,0 chrXIII 513091 . G A 747 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=10.67;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:93:780,93,0 chrXIII 513096 . T C 664 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;MQRankSum=0.613;QD=10.22;ReadPosRankSum=0.773;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:84:697,84,0 chrXIII 513097 . T C 651 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;MQRankSum=0.682;QD=9.86;ReadPosRankSum=1.680;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:84:684,84,0 chrXIII 513130 . T C 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=3.310;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.90;MQ0=0;MQRankSum=-1.086;QD=14.93;ReadPosRankSum=1.686;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1168,141,0 chrXIII 513160 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=18.32;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1700,204,0 chrXIII 513173 . T G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=99;Dels=0.00;FS=9.903;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;MQRankSum=-1.903;QD=17.37;ReadPosRankSum=2.201;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1753,213,0 chrXIII 513201 . G C 1938 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=17.30;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1971,234,0 chrXIII 513212 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=17.72;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2000,234,0 chrXIII 513259 . C A 2023 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=17.90;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2056,231,0 chrXIII 513285 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=20.63;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1972,213,0 chrXIII 513345 . T C 1516 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=0.577;QD=19.44;ReadPosRankSum=1.688;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1549,177,0 chrXIII 513350 . G A 1597 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=20.47;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1630,186,0 chrXIII 513352 . G T 1624 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=21.09;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1657,186,0 chrXIII 513381 . T C 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=-1.183;QD=18.45;ReadPosRankSum=1.605;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1546,183,0 chrXIII 513415 . G A 1322 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=17.63;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1355,150,0 chrXIII 513420 . A T 1371 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=17.81;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1404,156,0 chrXIII 513425 . A T 1369 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=17.78;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1402,153,0 chrXIII 513553 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.50;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2876,321,0 chrXIII 513778 . C G 4382.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.7359;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.91;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4382,507,0 chrXIII 514088 . A G 1053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;DP=68;Dels=0.00;FS=2.045;HaplotypeScore=43.8650;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=-2.176;QD=15.49;ReadPosRankSum=2.463;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:4,64:68:99:1086,126,0 chrXIII 514104 . A G 271 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=51.5167;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=4.11;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:66:36:304,36,0 chrXIII 514342 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=25.4951;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=16.95;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1270,144,0 chrXIII 514431 . A T 1714 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.85;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1747,195,0 chrXIII 515212 . T G 4007.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.0129;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.34;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4007,459,0 chrXIII 515220 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.5909;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.46;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3805,417,0 chrXIII 515265 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=204;Dels=0.00;FS=7.388;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.046;QD=20.41;ReadPosRankSum=2.377;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4164,471,0 chrXIII 515325 . T C 4484.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.42;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4484,510,0 chrXIII 515375 . G A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.42;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4455,498,0 chrXIII 515790 . G C 5493.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.21;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:0,252:259:99:5493,627,0 chrXIII 516057 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.430;QD=23.03;ReadPosRankSum=1.708;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3270,375,0 chrXIII 516109 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.69;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3070,342,0 chrXIII 516134 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.78;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3150,357,0 chrXIII 516303 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.378;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.679;QD=23.90;ReadPosRankSum=1.709;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3537,399,0 chrXIII 516474 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.49;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2819,318,0 chrXIII 516714 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.041;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.647;QD=21.97;ReadPosRankSum=1.073;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3296,359,0 chrXIII 517047 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3243,360,0 chrXIII 517277 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=24.00;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2745,303,0 chrXIII 517743 . T G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=2.986;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.428;QD=21.85;ReadPosRankSum=2.277;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3135,369,0 chrXIII 517791 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.657;QD=21.11;ReadPosRankSum=1.712;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3695,386,0 chrXIII 517795 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=3.615;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.969;QD=20.91;ReadPosRankSum=1.673;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3701,420,0 chrXIII 518064 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.91;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3643,426,0 chrXIII 518109 . C T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.22;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4504,492,0 chrXIII 518403 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.83;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3059,339,0 chrXIII 518469 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.57;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2854,312,0 chrXIII 519204 . A G 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.692;QD=21.00;ReadPosRankSum=1.692;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1860,210,0 chrXIII 519585 . C A 2416 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2449,270,0 chrXIII 519681 . T C 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=83;Dels=0.00;FS=4.613;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=21.66;ReadPosRankSum=1.561;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1831,207,0 chrXIII 519991 . C A 2882 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2915,315,0 chrXIII 520033 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.74;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3120,354,0 chrXIII 520122 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.574;DP=126;Dels=0.00;FS=8.069;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.137;QD=21.38;ReadPosRankSum=3.749;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:5,121:126:99:2727,315,0 chrXIII 520155 . A G 2601 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=13.9747;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.15;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2634,303,0 chrXIII 520382 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.30;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1822,198,0 chrXIII 520465 . C T 802 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.65;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:90:835,90,0 chrXIII 520686 . T C 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.944;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.585;QD=20.97;ReadPosRankSum=2.355;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1669,186,0 chrXIII 521041 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2960,321,0 chrXIII 521251 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.89;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3608,387,0 chrXIII 522008 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.53;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2786,306,0 chrXIII 522060 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.38;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2428,267,0 chrXIII 522131 . T C 2380 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2413,276,0 chrXIII 522191 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2250,252,0 chrXIII 522803 . T G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.707;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=20.56;ReadPosRankSum=1.689;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3330,387,0 chrXIII 523046 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.93;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3311,375,0 chrXIII 523223 . T C 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=151;Dels=0.00;FS=8.868;HaplotypeScore=17.4361;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.767;QD=19.77;ReadPosRankSum=2.400;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3019,348,0 chrXIII 523330 . T C 2720 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2753,312,0 chrXIII 523390 . T A 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=98;Dels=0.00;FS=3.053;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.088;QD=23.24;ReadPosRankSum=2.324;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2311,252,0 chrXIII 523621 . A G 2607 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.70;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2640,303,0 chrXIII 524040 . T C 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=108;Dels=0.00;FS=2.679;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.174;QD=21.69;ReadPosRankSum=2.359;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2376,276,0 chrXIII 524154 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.15;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3819,429,0 chrXIII 524178 . T G 3521.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.01;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3521,396,0 chrXIII 524221 . T G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=2.825;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-1.135;QD=20.84;ReadPosRankSum=2.387;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3293,372,0 chrXIII 524234 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.96;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3187,357,0 chrXIII 524320 . T A 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.136;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.208;QD=23.77;ReadPosRankSum=1.653;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4159,450,0 chrXIII 524617 . A C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.299;QD=22.73;ReadPosRankSum=1.708;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3319,381,0 chrXIII 524814 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.50;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3041,333,0 chrXIII 524991 . G C 4878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=215;Dels=0.00;FS=5.643;HaplotypeScore=20.6211;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.715;QD=22.69;ReadPosRankSum=0.356;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,208:215:99:4878,552,0 chrXIII 525537 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.20;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3708,396,0 chrXIII 525617 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=157;Dels=0.00;FS=6.804;HaplotypeScore=12.9642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.010;QD=21.79;ReadPosRankSum=2.418;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3421,387,0 chrXIII 525744 . C T 4854.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.03;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4854,537,0 chrXIII 526308 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.64;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3462,402,0 chrXIII 526564 . C G 3494.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.61;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3494,402,0 chrXIII 526779 . T A 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=3.724;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.347;QD=22.74;ReadPosRankSum=1.697;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2284,249,0 chrXIII 526851 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.5807;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.61;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2746,306,0 chrXIII 526914 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=20.01;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2174,237,0 chrXIII 526917 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=18.09;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2023,231,0 chrXIII 526932 . T A 1845 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.41;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1878,216,0 chrXIII 526971 . T C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=126;Dels=0.00;FS=2.965;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.289;QD=18.59;ReadPosRankSum=2.292;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2375,273,0 chrXIII 527250 . A T 5331.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.8538;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.28;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5331,594,0 chrXIII 527316 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.18;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3686,411,0 chrXIII 527507 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.29;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2367,258,0 chrXIII 527516 . A C 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=115;Dels=0.00;FS=4.092;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.733;QD=17.18;ReadPosRankSum=3.452;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:5,108:115:99:2009,231,0 chrXIII 527588 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.124;DP=123;Dels=0.00;FS=7.217;HaplotypeScore=2.8488;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.762;QD=19.11;ReadPosRankSum=1.718;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2384,276,0 chrXIII 527602 . A C 2671 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.36;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2704,309,0 chrXIII 527901 . G A 4552.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.71;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4552,501,0 chrXIII 528307 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.82;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2677,297,0 chrXIII 528346 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.49;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2912,318,0 chrXIII 528368 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=134;Dels=0.00;FS=2.550;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.752;QD=21.67;ReadPosRankSum=2.857;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2937,336,0 chrXIII 528469 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=134;Dels=0.00;FS=3.042;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.248;QD=21.30;ReadPosRankSum=2.303;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2887,333,0 chrXIII 528502 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.4579;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.77;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3153,354,0 chrXIII 528895 . G T 2825 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=21.40;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2858,324,0 chrXIII 528907 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=20.46;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2938,327,0 chrXIII 528910 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=143;Dels=0.00;FS=2.576;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-1.021;QD=19.46;ReadPosRankSum=2.895;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2816,321,0 chrXIII 528919 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=20.44;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3058,333,0 chrXIII 529003 . T A 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=111;Dels=0.00;FS=2.922;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.587;QD=23.04;ReadPosRankSum=2.361;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2590,288,0 chrXIII 529096 . A G 2787 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.94;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2820,318,0 chrXIII 529114 . T C 2827 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=21.58;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2860,324,0 chrXIII 529347 . A G 2325 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.53;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2358,264,0 chrXIII 529948 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.04;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2726,321,0 chrXIII 530518 . T A 2715 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.44;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2748,300,0 chrXIII 530525 . T G 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=122;Dels=0.00;FS=7.728;HaplotypeScore=4.1612;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=0.234;QD=20.75;ReadPosRankSum=2.368;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2565,294,0 chrXIII 530917 . C A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.21;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3760,417,0 chrXIII 531193 . C T 5140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=206;Dels=0.00;FS=3.437;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.094;QD=24.95;ReadPosRankSum=0.128;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:5140,555,0 chrXIII 531559 . G A 5514.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.46;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5514,600,0 chrXIII 531873 . G T 2127 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.37;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2160,237,0 chrXIII 532289 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7780;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.21;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3504,390,0 chrXIII 532595 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.17;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2272,252,0 chrXIII 532667 . A C 2648 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.53;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2681,300,0 chrXIII 532677 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.650;QD=19.48;ReadPosRankSum=1.705;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2507,285,0 chrXIII 532703 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.24;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2322,261,0 chrXIII 532942 . A G 2570 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.60;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2603,297,0 chrXIII 533975 . T C 4867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=220;Dels=0.00;FS=17.386;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.836;QD=22.12;ReadPosRankSum=3.809;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:5,213:220:99:4867,564,0 chrXIII 534586 . T A 5102.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.38;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5102,558,0 chrXIII 534609 . G T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.62;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4434,489,0 chrXIII 534912 . T C 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0131;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.430;QD=22.37;ReadPosRankSum=-1.315;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3008,345,0 chrXIII 534993 . T C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=155;Dels=0.00;FS=3.586;HaplotypeScore=12.3693;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.962;QD=20.14;ReadPosRankSum=1.709;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3155,360,0 chrXIII 535031 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.66;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3830,411,0 chrXIII 535127 . C G 3761.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3761,438,0 chrXIII 535437 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.04;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3778,414,0 chrXIII 535721 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=6.7320;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.30;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1373,156,0 chrXIII 535737 . A C 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.866;QD=21.87;ReadPosRankSum=1.675;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1345,156,0 chrXIII 535756 . A C 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.118;QD=20.24;ReadPosRankSum=1.676;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1288,147,0 chrXIII 536440 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=16.28;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2263,252,0 chrXIII 536671 . C T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.5102;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.60;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4625,504,0 chrXIII 536833 . C T 4924.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.04;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4924,552,0 chrXIII 536835 . G A 4976.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.26;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4976,540,0 chrXIII 536848 . T A 4517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-1.172;QD=19.72;ReadPosRankSum=1.717;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4517,492,0 chrXIII 536887 . A C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.516;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.095;QD=17.47;ReadPosRankSum=1.656;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3212,366,0 chrXIII 536927 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=18.71;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3120,351,0 chrXIII 536939 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.96;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3032,333,0 chrXIII 536982 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.13;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3390,396,0 chrXIII 537198 . C A 2777 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.76;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2810,306,0 chrXIII 537319 . A G 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=134;Dels=0.00;FS=3.042;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.156;QD=22.14;ReadPosRankSum=2.413;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3000,342,0 chrXIII 537442 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.36;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2716,309,0 chrXIII 537691 . C G 2840 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.90;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2873,324,0 chrXIII 537942 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.78;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3345,360,0 chrXIII 538143 . T A 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=158;Dels=0.00;FS=8.905;HaplotypeScore=12.8424;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-2.201;QD=22.15;ReadPosRankSum=2.356;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3500,393,0 chrXIII 538176 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=4.048;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.736;QD=22.27;ReadPosRankSum=1.710;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3607,423,0 chrXIII 538521 . A G 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.814;QD=20.36;ReadPosRankSum=1.709;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3108,348,0 chrXIII 538619 . A T 700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=92.5506;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;MQRankSum=-1.420;QD=7.00;ReadPosRankSum=1.663;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:90:733,90,0 chrXIII 538764 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.12;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2468,267,0 chrXIII 538772 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.490;QD=20.22;ReadPosRankSum=1.652;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2641,300,0 chrXIII 538839 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=22.42;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3475,402,0 chrXIII 539007 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.85;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2752,300,0 chrXIII 539282 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.2562;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.124;QD=23.06;ReadPosRankSum=1.662;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3459,387,0 chrXIII 539541 . A G 4039.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.48;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4039,468,0 chrXIII 539622 . A G 5133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.785;DP=232;Dels=0.00;FS=11.938;HaplotypeScore=14.4926;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.409;QD=22.13;ReadPosRankSum=3.765;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:5,227:232:99:5133,588,0 chrXIII 539865 . A G 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=224;Dels=0.00;FS=3.027;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.045;QD=18.26;ReadPosRankSum=2.361;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:4090,459,0 chrXIII 540088 . C A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.8838;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.12;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4058,459,0 chrXIII 540105 . T C 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=253;Dels=0.00;FS=3.720;HaplotypeScore=8.9487;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.165;QD=19.44;ReadPosRankSum=1.718;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:4918,558,0 chrXIII 540307 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=12.133;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.572;QD=16.97;ReadPosRankSum=2.381;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2477,279,0 chrXIII 540318 . C T 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-0.048;QD=16.21;ReadPosRankSum=0.625;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2400,248,0 chrXIII 540330 . A G 2587 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=16.58;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:2620,303,0 chrXIII 540423 . G C 3078 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3349;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.37;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3111,360,0 chrXIII 540446 . A T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.58;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3443,378,0 chrXIII 540526 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.33;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3456,375,0 chrXIII 540798 . G A 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.272;DP=128;Dels=0.00;FS=6.758;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.487;QD=20.86;ReadPosRankSum=1.056;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2703,277,0 chrXIII 541246 . A G 3450.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=21.84;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3450,408,0 chrXIII 541397 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=194;Dels=0.00;FS=8.408;HaplotypeScore=6.3391;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-1.579;QD=17.81;ReadPosRankSum=3.415;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:3456,402,0 chrXIII 541429 . T C 2503 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=127.0485;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=14.72;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2536,291,0 chrXIII 541511 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.544;QD=15.44;ReadPosRankSum=1.712;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:2750,315,0 chrXIII 541716 . C T 4600.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.70;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4600,498,0 chrXIII 541726 . T C 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=224;Dels=0.00;FS=4.138;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.210;QD=19.79;ReadPosRankSum=1.670;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4434,510,0 chrXIII 541746 . A T 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=224;Dels=0.00;FS=2.706;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-1.266;QD=19.05;ReadPosRankSum=2.406;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4267,462,0 chrXIII 541747 . C T 4239.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.01;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4239,462,0 chrXIII 541852 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=185;Dels=0.00;FS=3.769;HaplotypeScore=13.6847;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.756;QD=22.23;ReadPosRankSum=1.675;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,180:185:99:4113,471,0 chrXIII 542119 . T A 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.552;QD=22.50;ReadPosRankSum=1.695;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4163,465,0 chrXIII 542201 . T C 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.3030;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.109;QD=21.74;ReadPosRankSum=1.632;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4521,510,0 chrXIII 542277 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.34;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4139,462,0 chrXIII 542298 . T C 4029.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.09;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4029,462,0 chrXIII 542389 . T C 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.447;QD=20.86;ReadPosRankSum=1.718;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:1,247:252:99:5256,588,0 chrXIII 542587 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=12.08;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:2122,243,0 chrXIII 542926 . T A 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=132;Dels=0.00;FS=2.579;HaplotypeScore=13.4575;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.886;QD=21.39;ReadPosRankSum=2.947;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2856,315,0 chrXIII 542990 . C T 2638 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0715;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.54;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2671,297,0 chrXIII 543143 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.274;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.370;QD=23.03;ReadPosRankSum=1.709;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3524,411,0 chrXIII 543227 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=174;Dels=0.00;FS=8.153;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.899;QD=21.28;ReadPosRankSum=3.359;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:4,170:174:99:3703,426,0 chrXIII 543392 . T C 3208 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3241,366,0 chrXIII 543706 . A C 2946 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2979,342,0 chrXIII 544007 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.184;QD=22.16;ReadPosRankSum=1.706;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3003,342,0 chrXIII 544292 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2733,321,0 chrXIII 544798 . A G 6639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=16.7562;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.845;QD=23.21;ReadPosRankSum=1.708;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:1,284:285:99:6639,759,0 chrXIII 544984 . T C 3148 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.99;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3181,360,0 chrXIII 544988 . C G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.36;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3246,366,0 chrXIII 545060 . G C 2150 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.70;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2183,252,0 chrXIII 545131 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=21.02;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2892,315,0 chrXIII 545520 . C T 5596.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.02;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5596,612,0 chrXIII 545586 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=164;Dels=0.00;FS=5.562;HaplotypeScore=13.9679;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.276;QD=20.46;ReadPosRankSum=2.847;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3355,381,0 chrXIII 545665 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.25;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3867,426,0 chrXIII 545686 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.621;QD=19.52;ReadPosRankSum=1.714;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3651,429,0 chrXIII 545809 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.39;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3743,429,0 chrXIII 545936 . A T 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=3.463;HaplotypeScore=14.3951;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.495;QD=22.63;ReadPosRankSum=1.675;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4119,462,0 chrXIII 546319 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.8812;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.18;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3124,372,0 chrXIII 546766 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.34;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3906,453,0 chrXIII 547440 . T A 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9199;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.470;QD=23.44;ReadPosRankSum=1.673;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2822,306,0 chrXIII 547482 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.70;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2874,318,0 chrXIII 547537 . C T 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=130;Dels=0.00;FS=8.018;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.531;QD=21.05;ReadPosRankSum=2.971;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:5,124:130:99:2769,306,0 chrXIII 547540 . T C 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.525;DP=132;Dels=0.00;FS=13.006;HaplotypeScore=9.1873;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.348;QD=20.20;ReadPosRankSum=3.734;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:8,124:132:99:2699,309,0 chrXIII 547731 . G A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.76;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3849,417,0 chrXIII 547889 . A G 3015 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.0219;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.38;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3048,345,0 chrXIII 548019 . G C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;DP=141;Dels=0.00;FS=4.292;HaplotypeScore=12.5421;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.707;QD=20.16;ReadPosRankSum=1.403;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,136:141:99:2876,320,0 chrXIII 548070 . T G 2895 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2928,330,0 chrXIII 548115 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2862,312,0 chrXIII 548394 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.96;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2429,264,0 chrXIII 548625 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.740;DP=164;Dels=0.00;FS=7.633;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.383;QD=22.21;ReadPosRankSum=3.625;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:5,159:164:99:3643,414,0 chrXIII 548656 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2100;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.36;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3691,420,0 chrXIII 548999 . G C 3023 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.52;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3056,351,0 chrXIII 549187 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=10.9174;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.36;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3007,339,0 chrXIII 549484 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=148;Dels=0.00;FS=3.690;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.31;ReadPosRankSum=1.708;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3302,378,0 chrXIII 549556 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=6.826;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.313;QD=20.84;ReadPosRankSum=2.385;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3222,363,0 chrXIII 549635 . T G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=157;Dels=0.00;FS=6.447;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.994;QD=23.32;ReadPosRankSum=2.418;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3662,411,0 chrXIII 549691 . T A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.60;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3823,420,0 chrXIII 549772 . A G 2761 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.58;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2794,324,0 chrXIII 549970 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=114;Dels=0.00;FS=3.127;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.169;QD=22.35;ReadPosRankSum=1.640;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2581,297,0 chrXIII 550458 . C T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.3753;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.33;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4395,495,0 chrXIII 550932 . G C 3770.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.86;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3770,423,0 chrXIII 551044 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=2.785;HaplotypeScore=7.5174;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.386;QD=23.38;ReadPosRankSum=2.418;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3671,411,0 chrXIII 551083 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.15;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3575,393,0 chrXIII 551093 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=175;Dels=0.00;FS=3.565;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.584;QD=20.05;ReadPosRankSum=-0.069;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3509,396,0 chrXIII 551147 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.96;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3868,417,0 chrXIII 551159 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.78;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3797,420,0 chrXIII 551554 . T G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=170;Dels=0.00;FS=3.393;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.042;QD=22.42;ReadPosRankSum=1.690;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,165:170:99:3811,438,0 chrXIII 551662 . A C 2432 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2465,282,0 chrXIII 552227 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.285;QD=22.81;ReadPosRankSum=1.661;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3330,375,0 chrXIII 552305 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8668;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.22;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3254,351,0 chrXIII 552364 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.7903;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.75;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3481,381,0 chrXIII 552466 . T G 38.97 filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=140.7023;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=0.26;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:9:71,9,0 chrXIII 552615 . T C 3706.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.60;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3706,426,0 chrXIII 552657 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.31;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4351,489,0 chrXIII 552774 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.13;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2979,339,0 chrXIII 553020 . T A 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.673;QD=22.84;ReadPosRankSum=0.558;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2728,283,0 chrXIII 553241 . A C 3036 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.2295;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.16;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3069,357,0 chrXIII 553315 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.32;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3356,363,0 chrXIII 554323 . G A 3167 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.11;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3200,357,0 chrXIII 554339 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=19.70;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3165,360,0 chrXIII 554399 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.6461;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=-1.138;QD=18.99;ReadPosRankSum=3.403;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:4,152:156:99:2996,345,0 chrXIII 554401 . T C 2893 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=19.03;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2926,333,0 chrXIII 554421 . T C 2630 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=19.77;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2663,312,0 chrXIII 554448 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=18.39;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1854,207,0 chrXIII 554456 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=17.81;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1707,186,0 chrXIII 554664 . A G 825 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.92;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:858,102,0 chrXIII 554724 . T G 853 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.80;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:886,105,0 chrXIII 555036 . G C 3746.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.36;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3746,426,0 chrXIII 555078 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=181;Dels=0.00;FS=3.031;HaplotypeScore=18.1376;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.283;QD=20.37;ReadPosRankSum=2.422;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3687,420,0 chrXIII 555444 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.64;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3962,441,0 chrXIII 555852 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3261,357,0 chrXIII 555906 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.26;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2483,273,0 chrXIII 556209 . T C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.818;QD=21.38;ReadPosRankSum=1.704;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2706,315,0 chrXIII 556437 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.90;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3336,360,0 chrXIII 556610 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.59;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2689,300,0 chrXIII 557365 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4593;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.885;QD=22.13;ReadPosRankSum=1.953;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2467,282,0 chrXIII 557425 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.78;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2015,225,0 chrXIII 557517 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.95;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4816,534,0 chrXIII 558987 . A G 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.887;QD=19.84;ReadPosRankSum=2.390;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1680,192,0 chrXIII 559180 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2625,297,0 chrXIII 559312 . A C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.67;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3809,441,0 chrXIII 559794 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.8620;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2386,261,0 chrXIII 560210 . A C 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=4.058;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.693;QD=22.63;ReadPosRankSum=1.658;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3224,369,0 chrXIII 560261 . G C 2497 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.34;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2530,288,0 chrXIII 560317 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2968,327,0 chrXIII 560374 . T C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=131;Dels=0.00;FS=3.769;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.331;QD=19.94;ReadPosRankSum=0.727;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2645,306,0 chrXIII 560428 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.50;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2935,321,0 chrXIII 561397 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.38;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3560,390,0 chrXIII 561510 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=147;Dels=0.00;FS=2.584;HaplotypeScore=10.9357;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.884;QD=20.70;ReadPosRankSum=2.939;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3076,351,0 chrXIII 561662 . A G 1860 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.79;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1893,222,0 chrXIII 561844 . T C 895 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:55:99:928,105,0 chrXIII 561863 . C T 722 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:41:84:755,84,0 chrXIII 561922 . A T 538 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:63:571,63,0 chrXIII 561993 . T G 2423 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.096;QD=24.72;ReadPosRankSum=1.661;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2456,279,0 chrXIII 562025 . C A 2352 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2385,276,0 chrXIII 562247 . C G 5255.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.19;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5255,588,0 chrXIII 562453 . T C 4872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=227;Dels=0.00;FS=8.986;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.849;QD=21.46;ReadPosRankSum=2.428;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:4872,549,0 chrXIII 562531 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6771;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.81;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4447,489,0 chrXIII 562614 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.1338;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=17.94;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2599,291,0 chrXIII 562625 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=111.7431;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=17.42;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2350,261,0 chrXIII 562658 . A G 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=-0.068;QD=17.94;ReadPosRankSum=1.705;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2311,261,0 chrXIII 562752 . A G 2202 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.80;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2235,255,0 chrXIII 562796 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=106;Dels=0.04;FS=3.052;HaplotypeScore=10.3357;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=1.267;QD=20.95;ReadPosRankSum=2.305;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2254,258,0 chrXIII 562848 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=95.7011;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=22.34;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2356,270,0 chrXIII 562955 . T C 2621 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.99;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2654,309,0 chrXIII 563052 . C G 2222 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.16;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2255,255,0 chrXIII 563079 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.7179;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.73;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2914,318,0 chrXIII 563317 . C T 5240.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.82;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5240,591,0 chrXIII 563599 . G A 4477.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.16;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4477,495,0 chrXIII 564548 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2947,321,0 chrXIII 564933 . A G 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=212;Dels=0.00;FS=6.033;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.567;QD=23.41;ReadPosRankSum=2.957;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:4962,561,0 chrXIII 565004 . T C 4611.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=17.1898;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.38;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:4611,528,0 chrXIII 565076 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.8765;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.77;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4424,486,0 chrXIII 565299 . T A 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.097;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-1.296;QD=21.91;ReadPosRankSum=1.686;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3309,363,0 chrXIII 565315 . T A 3079 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.99;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3112,342,0 chrXIII 565610 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3426,372,0 chrXIII 565803 . A G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=127;Dels=0.00;FS=2.821;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.726;QD=23.02;ReadPosRankSum=2.392;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2956,330,0 chrXIII 565878 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.37;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2718,303,0 chrXIII 566017 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=4.327;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.266;QD=19.60;ReadPosRankSum=1.652;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2581,300,0 chrXIII 566019 . C T 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.900;QD=19.63;ReadPosRankSum=1.571;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2565,285,0 chrXIII 566147 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.07;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3392,369,0 chrXIII 566425 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=178;Dels=0.00;FS=6.096;HaplotypeScore=16.8621;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.121;QD=22.16;ReadPosRankSum=2.937;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:3,172:178:99:3945,459,0 chrXIII 566484 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=21.79;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3149,342,0 chrXIII 566498 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=20.66;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2946,324,0 chrXIII 566510 . G T 3094 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=19.10;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3127,345,0 chrXIII 566527 . T A 3077 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.10;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3110,342,0 chrXIII 566650 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.70;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3162,342,0 chrXIII 566961 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.57;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3453,375,0 chrXIII 566965 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=20.86;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3058,342,0 chrXIII 566975 . T C 2662 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=18.62;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2695,315,0 chrXIII 566980 . G T 2802 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.06;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2835,309,0 chrXIII 567107 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.00;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3910,426,0 chrXIII 567163 . A G 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.533;QD=22.92;ReadPosRankSum=1.705;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3012,342,0 chrXIII 567592 . T A 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=143;Dels=0.00;FS=6.034;HaplotypeScore=8.6803;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.250;QD=23.31;ReadPosRankSum=2.950;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3334,369,0 chrXIII 568072 . T A 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.8265;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.686;QD=22.63;ReadPosRankSum=1.686;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3395,369,0 chrXIII 568220 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.94;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2556,276,0 chrXIII 568243 . G C 2807 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.82;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2840,321,0 chrXIII 568297 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=139;Dels=0.00;FS=9.417;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=2.022;QD=20.65;ReadPosRankSum=2.396;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2904,330,0 chrXIII 568371 . A G 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=120;Dels=0.00;FS=6.673;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.073;QD=20.72;ReadPosRankSum=2.366;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2519,285,0 chrXIII 568443 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.96;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2972,324,0 chrXIII 568527 . G A 4495.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.25;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4495,483,0 chrXIII 568577 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.29;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3388,384,0 chrXIII 568585 . A G 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=168;Dels=0.00;FS=9.130;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.618;QD=18.87;ReadPosRankSum=2.390;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,163:168:99:3203,366,0 chrXIII 568895 . G C 4758.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.2057;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.87;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4758,525,0 chrXIII 569109 . T A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.9385;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.48;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4081,468,0 chrXIII 569211 . G C 5375.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.0209;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.07;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:5375,612,0 chrXIII 569309 . A T 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=3.754;HaplotypeScore=15.5363;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.642;QD=23.99;ReadPosRankSum=1.697;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4726,525,0 chrXIII 569415 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.51;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5101,552,0 chrXIII 569735 . T G 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=3.002;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-2.060;QD=19.49;ReadPosRankSum=2.401;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2021,237,0 chrXIII 569738 . A G 2048 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.08;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2081,234,0 chrXIII 569867 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3132,336,0 chrXIII 570835 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.748;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.268;QD=22.78;ReadPosRankSum=2.339;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3086,354,0 chrXIII 571226 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=7.296;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.347;QD=22.39;ReadPosRankSum=2.377;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3078,351,0 chrXIII 571349 . A G 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.163;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.490;QD=21.38;ReadPosRankSum=1.708;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3133,360,0 chrXIII 571441 . T C 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=3.035;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.578;QD=23.63;ReadPosRankSum=2.385;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3568,402,0 chrXIII 571457 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.67;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3814,429,0 chrXIII 571706 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.16;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3387,399,0 chrXIII 571949 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3755,438,0 chrXIII 572206 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=179;Dels=0.00;FS=4.309;HaplotypeScore=13.7013;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.195;QD=24.27;ReadPosRankSum=-1.460;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4345,486,0 chrXIII 572241 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=8.8117;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.44;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4407,489,0 chrXIII 572286 . A G 4912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=3.593;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.443;QD=22.74;ReadPosRankSum=1.700;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4912,564,0 chrXIII 572476 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=4.053;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.362;QD=23.72;ReadPosRankSum=1.713;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4222,480,0 chrXIII 572646 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=18.05;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2037,234,0 chrXIII 572658 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.79;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1987,228,0 chrXIII 572735 . C A 1765 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.76;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1798,195,0 chrXIII 572747 . G C 1503 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.04;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1536,174,0 chrXIII 572794 . T A 1317 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.95;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1350,150,0 chrXIII 572799 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=19.15;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1297,147,0 chrXIII 572972 . T C 1070 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=19.81;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1103,126,0 chrXIII 572974 . C A 1037 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.94;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1070,120,0 chrXIII 572995 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=18.44;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1250,138,0 chrXIII 573026 . T C 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.193;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;MQRankSum=-0.308;QD=14.54;ReadPosRankSum=1.685;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1109,126,0 chrXIII 573027 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=14.69;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1120,129,0 chrXIII 573050 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=14.30;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1134,126,0 chrXIII 573111 . T G 1973 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.99;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2006,231,0 chrXIII 573136 . T A 2074 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.03;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2107,234,0 chrXIII 573151 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.56;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2335,258,0 chrXIII 573200 . T C 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.386;QD=19.26;ReadPosRankSum=2.956;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3114,345,0 chrXIII 573292 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.942;QD=24.56;ReadPosRankSum=1.656;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3365,381,0 chrXIII 573404 . C T 5136.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.89;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5136,555,0 chrXIII 573569 . C G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.49;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3464,393,0 chrXIII 573653 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=21.31;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2739,300,0 chrXIII 573680 . A C 2353 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=18.82;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2386,273,0 chrXIII 573690 . G C 2321 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=17.72;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2354,270,0 chrXIII 573694 . A G 2247 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.28;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2280,258,0 chrXIII 573729 . T C 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=137;Dels=0.00;FS=6.183;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.280;QD=17.91;ReadPosRankSum=2.395;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2487,279,0 chrXIII 573793 . T A 2860 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.67;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2893,312,0 chrXIII 573801 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.23;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2814,306,0 chrXIII 573842 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.23;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2368,255,0 chrXIII 573863 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.70;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2414,273,0 chrXIII 573912 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.42;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2858,312,0 chrXIII 573938 . A C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-0.346;QD=20.58;ReadPosRankSum=1.681;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2852,327,0 chrXIII 573992 . G A 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.935;QD=21.53;ReadPosRankSum=1.640;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2466,270,0 chrXIII 574043 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=11.4940;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=20.53;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2024,222,0 chrXIII 574045 . A G 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=0.707;QD=19.61;ReadPosRankSum=1.661;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1974,228,0 chrXIII 574746 . G T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.90;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4158,456,0 chrXIII 575064 . T C 5279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=237;Dels=0.00;FS=3.016;HaplotypeScore=14.4105;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.674;QD=22.27;ReadPosRankSum=2.429;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:2,234:237:99:5279,606,0 chrXIII 575098 . G A 5257.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.2896;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.34;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5257,570,0 chrXIII 575127 . A T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.16;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4284,477,0 chrXIII 576259 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.23;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3462,378,0 chrXIII 576343 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,121:126:99:2796,312,0 chrXIII 577768 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.70;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3276,372,0 chrXIII 577948 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.47;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3597,387,0 chrXIII 578615 . T G 2008 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2041,231,0 chrXIII 578710 . A T 1267 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.6380;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.36;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1300,141,0 chrXIII 579159 . T C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.652;QD=21.85;ReadPosRankSum=1.678;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2873,330,0 chrXIII 579347 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=3.036;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.153;QD=22.36;ReadPosRankSum=2.360;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3118,351,0 chrXIII 579707 . A G 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.657;QD=23.30;ReadPosRankSum=1.672;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4078,465,0 chrXIII 579968 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=154;Dels=0.00;FS=3.245;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.752;QD=20.31;ReadPosRankSum=1.709;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3161,366,0 chrXIII 579980 . A T 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.816;QD=21.80;ReadPosRankSum=1.710;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3379,372,0 chrXIII 580121 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.285;DP=171;Dels=0.00;FS=14.414;HaplotypeScore=13.6893;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.660;QD=22.44;ReadPosRankSum=3.408;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:4,166:171:99:3837,435,0 chrXIII 581216 . A T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.66;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3809,423,0 chrXIII 581529 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.02;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3614,393,0 chrXIII 581540 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.35;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3456,381,0 chrXIII 581828 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.78;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2554,282,0 chrXIII 581966 . C T 2619 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2652,300,0 chrXIII 582869 . A G 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=125;Dels=0.00;FS=12.367;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.492;QD=22.39;ReadPosRankSum=2.879;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2832,318,0 chrXIII 583157 . C A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.13;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3655,408,0 chrXIII 584001 . T G 2253 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2286,258,0 chrXIII 584216 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1643,180,0 chrXIII 584328 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.82;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2058,228,0 chrXIII 584832 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=2.952;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.136;QD=21.47;ReadPosRankSum=2.318;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2846,324,0 chrXIII 584962 . A G 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=151;Dels=0.00;FS=6.171;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.025;QD=18.39;ReadPosRankSum=2.399;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,144:151:99:2810,324,0 chrXIII 584970 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.73;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3246,348,0 chrXIII 585021 . T G 2914 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3583;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.52;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2947,336,0 chrXIII 585141 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.803;QD=22.09;ReadPosRankSum=1.707;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3081,354,0 chrXIII 585165 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.00;FS=7.106;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.339;QD=20.50;ReadPosRankSum=2.390;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2595,303,0 chrXIII 585609 . A G 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=112;Dels=0.00;FS=3.032;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.366;QD=21.03;ReadPosRankSum=2.383;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2388,282,0 chrXIII 585807 . A T 2997 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.04;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3030,336,0 chrXIII 585859 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.61;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2626,300,0 chrXIII 585987 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.60;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3062,348,0 chrXIII 586147 . C G 2860 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.83;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2893,330,0 chrXIII 586154 . T A 2927 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.36;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2960,339,0 chrXIII 586462 . G A 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.433;QD=24.83;ReadPosRankSum=0.982;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3013,327,0 chrXIII 586528 . T C 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=123;Dels=0.00;FS=7.941;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.333;QD=19.43;ReadPosRankSum=2.264;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:2,118:123:99:2423,276,0 chrXIII 586744 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.33;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1641,177,0 chrXIII 586759 . T C 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=5.304;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.533;QD=21.04;ReadPosRankSum=1.688;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1674,192,0 chrXIII 586795 . T G 1688 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.64;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1721,195,0 chrXIII 587075 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2343,255,0 chrXIII 587600 . A G 901 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.532;QD=17.33;ReadPosRankSum=1.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:99:934,108,0 chrXIII 587703 . A G 128.13 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=62.06;MQ0=0;QD=3.29;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:39:18:161,18,0 chrXIII 587706 . A G 125.13 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=63.18;MQ0=0;QD=2.78;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:18:158,18,0 chrXIII 587934 . A G 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.561;DP=210;Dels=0.00;FS=3.827;HaplotypeScore=6.0937;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.666;QD=23.75;ReadPosRankSum=1.716;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4988,582,0 chrXIII 587969 . T C 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=216;Dels=0.00;FS=6.053;HaplotypeScore=17.9704;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.460;QD=21.62;ReadPosRankSum=2.958;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4670,552,0 chrXIII 588573 . C T 1928 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;MQRankSum=-0.927;QD=13.58;ReadPosRankSum=0.732;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:1961,219,0 chrXIII 588576 . T C 1615 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=12.23;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1648,189,0 chrXIII 588579 . A C 1594 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=75.2098;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=12.65;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1627,186,0 chrXIII 588594 . C T 123.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.580;DP=98;Dels=0.00;FS=0.957;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;MQRankSum=0.597;QD=1.26;ReadPosRankSum=-7.004;SB=-9.213e+01 GT:AD:DP:GQ:PL 1/1:77,21:98:18:156,18,0 chrXIII 588651 . T C 380 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=70.5154;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=4.04;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:48:413,48,0 chrXIII 588661 . T G 1194 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=10.38;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1227,144,0 chrXIII 588927 . T A 2518 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.3351;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.16;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2551,288,0 chrXIII 589273 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.09;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2734,300,0 chrXIII 589414 . A G 2501 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2534,291,0 chrXIII 589588 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.26;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3361,375,0 chrXIII 589690 . G T 1683 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.30;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1716,198,0 chrXIII 590016 . A G 2651 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2684,306,0 chrXIII 590250 . G T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.47;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3307,360,0 chrXIII 590486 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.8380;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.55;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3585,399,0 chrXIII 590865 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=2.916;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.569;QD=22.94;ReadPosRankSum=2.337;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4015,459,0 chrXIII 591615 . T A 5718.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.4551;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.06;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5718,639,0 chrXIII 592776 . A C 690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.172;DP=149;Dels=0.00;FS=6.868;HaplotypeScore=107.3121;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.325;QD=4.63;ReadPosRankSum=-6.714;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:106,43:149:84:723,84,0 chrXIII 593048 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.5174;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.75;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3121,348,0 chrXIII 593072 . T C 3189 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.94;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3222,366,0 chrXIII 593397 . G A 5159.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.7731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5159,567,0 chrXIII 594254 . A G 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=212;Dels=0.00;FS=3.012;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.237;QD=21.60;ReadPosRankSum=2.380;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4580,522,0 chrXIII 594280 . T A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.9271;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.47;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4319,489,0 chrXIII 594379 . T C 4603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=207;Dels=0.00;FS=5.936;HaplotypeScore=18.3777;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.951;QD=22.24;ReadPosRankSum=2.927;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:4603,525,0 chrXIII 594694 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3899,432,0 chrXIII 595371 . C T 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=3.315;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.195;QD=21.92;ReadPosRankSum=0.300;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2970,327,0 chrXIII 595605 . C A 2538 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.28;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2571,282,0 chrXIII 595697 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.00;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2678,297,0 chrXIII 595719 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.98;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2803,303,0 chrXIII 595882 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.57;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3499,387,0 chrXIII 595929 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.5739;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.610;QD=21.02;ReadPosRankSum=1.693;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3699,423,0 chrXIII 596122 . T C 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=213;Dels=0.00;FS=3.027;HaplotypeScore=11.1238;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.550;QD=23.62;ReadPosRankSum=2.426;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:5030,567,0 chrXIII 596760 . T C 3145 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3178,360,0 chrXIII 596917 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.8133;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.74;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3126,351,0 chrXIII 596993 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.90;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3366,372,0 chrXIII 597167 . A G 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=138;Dels=0.00;FS=3.009;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.169;QD=21.99;ReadPosRankSum=2.378;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3067,348,0 chrXIII 597509 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.51;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2550,288,0 chrXIII 597636 . A C 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=120;Dels=0.00;FS=7.941;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.217;QD=22.13;ReadPosRankSum=2.367;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2689,306,0 chrXIII 597709 . G C 2557 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.96;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2590,297,0 chrXIII 597731 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=2.938;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.970;QD=18.31;ReadPosRankSum=2.411;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2377,279,0 chrXIII 597758 . G C 1902 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=16.40;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1935,225,0 chrXIII 597926 . G T 2119 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.78;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2152,237,0 chrXIII 598154 . G A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3622,408,0 chrXIII 598424 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.48;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4114,450,0 chrXIII 599023 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=192;Dels=0.00;FS=2.579;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.424;QD=23.26;ReadPosRankSum=2.953;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4466,504,0 chrXIII 599084 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=207;Dels=0.00;FS=9.095;HaplotypeScore=11.7450;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.449;QD=21.81;ReadPosRankSum=2.898;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:4515,504,0 chrXIII 599192 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.8976;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.39;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3315,375,0 chrXIII 599321 . C G 2480 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=19.84;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2513,282,0 chrXIII 599343 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.64;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2262,264,0 chrXIII 599439 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=4.545;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.177;QD=21.62;ReadPosRankSum=1.706;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2887,336,0 chrXIII 599609 . C T 3179 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.220;DP=176;Dels=0.00;FS=6.061;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=6;MQRankSum=2.542;QD=18.06;ReadPosRankSum=-2.078;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:7,169:176:99:3212,325,0 chrXIII 599730 . A G 2864.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.026;DP=199;Dels=0.00;FS=23.222;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.46;MQ0=0;MQRankSum=5.465;QD=14.39;ReadPosRankSum=-0.407;SB=-1.462e+03 GT:AD:DP:GQ:PL 0/1:25,174:199:99:2894,0,124 chrXIII 599732 . C T 3030.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;DP=203;Dels=0.00;FS=24.943;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.52;MQ0=0;MQRankSum=5.601;QD=14.93;ReadPosRankSum=-0.931;SB=-1.523e+03 GT:AD:DP:GQ:PL 0/1:26,177:203:99:3060,0,115 chrXIII 599735 . T C 3016.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;DP=215;Dels=0.00;FS=20.946;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.09;MQ0=0;MQRankSum=5.806;QD=14.03;ReadPosRankSum=-1.399;SB=-1.616e+03 GT:AD:DP:GQ:PL 0/1:28,187:215:99:3046,0,119 chrXIII 599751 . C T 2698.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DP=216;Dels=0.00;FS=25.160;HaplotypeScore=7.0470;MLEAC=1;MLEAF=0.500;MQ=40.76;MQ0=0;MQRankSum=6.415;QD=12.49;ReadPosRankSum=-3.543;SB=-1.860e+03 GT:AD:DP:GQ:PL 0/1:31,185:216:99:2728,0,248 chrXIII 599808 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=2;QD=20.14;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3846,417,0 chrXIII 599844 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=185;Dels=0.00;FS=2.085;HaplotypeScore=18.2537;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=3;MQRankSum=2.894;QD=21.57;ReadPosRankSum=0.469;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:3991,430,0 chrXIII 599886 . C T 3971.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=1;QD=20.36;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3971,432,0 chrXIII 599901 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=1;QD=19.15;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3561,408,0 chrXIII 599907 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=182;Dels=0.00;FS=2.862;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=1;MQRankSum=-0.280;QD=17.68;ReadPosRankSum=2.395;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3251,372,0 chrXIII 599973 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.8131;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.32;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,150:155:99:3304,363,0 chrXIII 600252 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=180;Dels=0.00;FS=10.273;HaplotypeScore=11.4347;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.006;QD=21.48;ReadPosRankSum=2.892;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:3,174:180:99:3867,435,0 chrXIII 600354 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=172;Dels=0.00;FS=2.970;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.884;QD=19.94;ReadPosRankSum=2.406;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3429,387,0 chrXIII 600548 . C A 2892 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=2;QD=22.25;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2925,324,0 chrXIII 600549 . G A 2945 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=2;QD=23.37;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2978,327,0 chrXIII 600558 . C T 2702 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=6;QD=21.97;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2735,303,0 chrXIII 600564 . T A 2544 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=10;QD=21.38;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,113:119:99:2577,291,0 chrXIII 600729 . C T 2222 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=15;QD=18.52;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2255,252,0 chrXIII 600765 . C T 1282 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2780;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=30;QD=13.78;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1315,150,0 chrXIII 600792 . A G 818 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.320;DP=86;Dels=0.00;FS=4.771;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=43;MQRankSum=-1.650;QD=9.51;ReadPosRankSum=1.485;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:851,102,0 chrXIII 600819 . C T 1207 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=33.41;MQ0=37;QD=12.57;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1240,135,0 chrXIII 600972 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=23.16;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3613,399,0 chrXIII 601104 . A T 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=3.434;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.725;QD=24.35;ReadPosRankSum=1.712;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4188,456,0 chrXIII 601213 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=19.31;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3534,414,0 chrXIII 601257 . A C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;MQRankSum=-0.346;QD=16.02;ReadPosRankSum=1.711;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2709,312,0 chrXIII 601259 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=89.6413;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=15.71;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2656,297,0 chrXIII 601355 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.79;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3464,390,0 chrXIII 601547 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5273;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.05;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4321,492,0 chrXIII 601700 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.19;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4038,438,0 chrXIII 601760 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=155;Dels=0.00;FS=3.680;HaplotypeScore=15.0447;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.472;QD=22.09;ReadPosRankSum=1.665;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3424,387,0 chrXIII 601871 . C T 4265.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.6593;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=23.43;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4265,465,0 chrXIII 601986 . C T 3384.01 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=19;QD=21.55;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3384,378,0 chrXIII 602018 . G A 4532.01 filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=13;QD=22.33;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4532,486,0 chrXIII 602096 . C T 4955.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=2;QD=21.36;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4955,537,0 chrXIII 602111 . T C 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=2;MQRankSum=-1.533;QD=20.01;ReadPosRankSum=1.717;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4583,519,0 chrXIII 602117 . A G 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=3.090;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=2;MQRankSum=0.866;QD=19.35;ReadPosRankSum=1.716;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4295,489,0 chrXIII 602261 . A T 5165.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.7775;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=23.06;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5165,567,0 chrXIII 602408 . T A 5862.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.64;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5862,634,0 chrXIII 602462 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.125;DP=191;Dels=0.00;FS=6.091;HaplotypeScore=13.8444;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.202;QD=20.79;ReadPosRankSum=1.070;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:2,185:191:99:3970,434,0 chrXIII 602564 . A G 4815.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.9416;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=1;QD=21.31;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4815,543,0 chrXIII 602603 . G A 4378.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2640;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=1;QD=23.41;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4378,477,0 chrXIII 602618 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.071;DP=194;Dels=0.00;FS=14.630;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=1;MQRankSum=1.741;QD=21.52;ReadPosRankSum=3.360;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4174,480,0 chrXIII 602663 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=168;Dels=0.00;FS=7.517;HaplotypeScore=11.4493;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=1.338;QD=21.77;ReadPosRankSum=2.333;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3657,414,0 chrXIII 602744 . G A 4623.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=23.95;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4623,504,0 chrXIII 602774 . T C 3324.01 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=11;QD=20.39;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,158:163:99:3324,387,0 chrXIII 602939 . C T 2136 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=20;QD=16.43;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2169,240,0 chrXIII 602975 . C T 1730 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=24;QD=15.45;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1763,195,0 chrXIII 602992 . G A 1480 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=36;QD=13.10;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:17,96:113:99:1513,165,0 chrXIII 603002 . A G 1134 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=109;Dels=0.00;FS=3.854;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=40;MQRankSum=-0.662;QD=10.40;ReadPosRankSum=1.681;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:1167,135,0 chrXIII 603029 . C T 597 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=39;QD=7.28;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:69:630,69,0 chrXIII 603074 . G T 558 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=16;QD=9.00;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:9,52:62:66:591,66,0 chrXIII 603083 . T C 518 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=6;QD=10.36;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:5,44:50:63:551,63,0 chrXIII 603086 . T C 491 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=4;MQRankSum=-2.090;QD=9.26;ReadPosRankSum=2.348;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:6,47:53:60:524,60,0 chrXIII 603115 . G T 1259 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=14.81;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1292,147,0 chrXIII 603125 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=13.80;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1358,153,0 chrXIII 603131 . A G 1391 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;QD=13.77;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1424,165,0 chrXIII 603221 . G A 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.164;DP=111;Dels=0.00;FS=3.410;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-0.809;QD=21.67;ReadPosRankSum=1.120;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2438,226,0 chrXIII 603225 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=22.38;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2450,270,0 chrXIII 603237 . A G 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.490;DP=100;Dels=0.00;FS=5.086;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=0.000;QD=20.01;ReadPosRankSum=-1.628;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2034,215,0 chrXIII 603486 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.83;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3069,339,0 chrXIII 603572 . T C 3180 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.34;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3213,366,0 chrXIII 603797 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.98;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3333,366,0 chrXIII 603987 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=155;Dels=0.00;FS=6.071;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.490;QD=20.15;ReadPosRankSum=2.914;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:3156,366,0 chrXIII 604354 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3145,345,0 chrXIII 604831 . G T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3447,381,0 chrXIII 605013 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=164;Dels=0.00;FS=5.205;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.986;QD=22.35;ReadPosRankSum=3.406;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3665,426,0 chrXIII 605479 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=16.81;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2017,225,0 chrXIII 605741 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=25.02;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1434,153,0 chrXIII 605754 . C G 1221 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=22.20;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1254,141,0 chrXIII 605794 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.92;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1372,150,0 chrXIII 605946 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=15.93;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1499,168,0 chrXIII 605965 . A C 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=5.339;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.163;QD=16.96;ReadPosRankSum=1.699;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1831,207,0 chrXIII 606066 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.48;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3569,411,0 chrXIII 606299 . C T 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=223;Dels=0.00;FS=3.171;HaplotypeScore=16.0034;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.031;QD=21.69;ReadPosRankSum=-0.047;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:1,219:223:99:4836,510,0 chrXIII 606387 . C T 4911.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.29;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4911,546,0 chrXIII 606680 . C T 4361.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.20;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4361,474,0 chrXIII 606777 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.957;QD=22.07;ReadPosRankSum=1.709;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3354,378,0 chrXIII 606837 . C T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4438,477,0 chrXIII 606945 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.3697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.489;QD=21.39;ReadPosRankSum=1.691;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3658,420,0 chrXIII 607077 . A G 2970 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3003,345,0 chrXIII 607553 . C T 5159.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.2227;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.22;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5159,567,0 chrXIII 608020 . T G 4176.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.14;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4176,468,0 chrXIII 608383 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=22.54;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2107,234,0 chrXIII 608595 . C A 1513 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.01;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1546,174,0 chrXIII 608649 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.23;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2001,216,0 chrXIII 608654 . A G 1886 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.93;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1919,219,0 chrXIII 608733 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;MQRankSum=-0.325;QD=22.60;ReadPosRankSum=1.705;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2926,333,0 chrXIII 608937 . T C 2724 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=179;Dels=0.00;FS=13.162;HaplotypeScore=87.2813;MLEAC=2;MLEAF=1.00;MQ=29.04;MQ0=4;MQRankSum=2.509;QD=15.22;ReadPosRankSum=2.937;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:2757,312,0 chrXIII 608940 . C T 1909.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.879;DP=179;Dels=0.00;FS=44.080;HaplotypeScore=90.2514;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=4;MQRankSum=2.150;QD=10.66;ReadPosRankSum=5.608;SB=-1.142e+03 GT:AD:DP:GQ:PL 0/1:70,109:179:99:1939,0,179 chrXIII 608941 . A G 1756.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=182;Dels=0.00;FS=44.118;HaplotypeScore=91.2409;MLEAC=1;MLEAF=0.500;MQ=28.54;MQ0=7;MQRankSum=0.505;QD=9.65;ReadPosRankSum=4.993;SB=-1.002e+03 GT:AD:DP:GQ:PL 0/1:74,108:182:99:1786,0,193 chrXIII 608967 . T C 1265.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.852;DP=181;Dels=0.00;FS=15.928;HaplotypeScore=71.4940;MLEAC=1;MLEAF=0.500;MQ=27.48;MQ0=7;MQRankSum=2.870;QD=6.99;ReadPosRankSum=-3.919;SB=-5.660e+02 GT:AD:DP:GQ:PL 0/1:27,154:181:99:1295,0,108 chrXIII 608970 . T C 143.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.488;DP=195;Dels=0.00;FS=11.634;HaplotypeScore=83.4073;MLEAC=1;MLEAF=0.500;MQ=27.59;MQ0=7;MQRankSum=1.878;QD=0.73;ReadPosRankSum=0.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,40:195:99:173,0,1184 chrXIII 608973 . A C 420.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.322;DP=198;Dels=0.00;FS=20.158;HaplotypeScore=84.3856;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=7;MQRankSum=1.489;QD=2.12;ReadPosRankSum=-3.518;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:127,47:198:99:450,0,815 chrXIII 608976 . T C 284.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.949;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=145.7913;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=7;MQRankSum=2.183;QD=1.49;ReadPosRankSum=-1.869;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:156,35:191:99:314,0,890 chrXIII 608979 . C T 960.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.857;DP=190;Dels=0.00;FS=1.792;HaplotypeScore=162.4728;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=7;MQRankSum=0.344;QD=5.05;ReadPosRankSum=3.110;SB=-7.870e+02 GT:AD:DP:GQ:PL 0/1:32,158:190:99:990,0,308 chrXIII 608988 . C T 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.556;DP=223;Dels=0.00;FS=35.256;HaplotypeScore=157.9436;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=7;MQRankSum=2.253;QD=0.26;ReadPosRankSum=-0.559;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:202,21:223:87:87,0,1160 chrXIII 608989 . A G 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.785;DP=219;Dels=0.00;FS=68.882;HaplotypeScore=153.9844;MLEAC=1;MLEAF=0.500;MQ=27.41;MQ0=7;MQRankSum=2.641;QD=0.92;ReadPosRankSum=-3.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,39:219:99:231,0,935 chrXIII 608991 . T C 181.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.727;DP=216;Dels=0.00;FS=11.296;HaplotypeScore=139.0896;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=7;MQRankSum=2.939;QD=0.84;ReadPosRankSum=2.614;SB=-7.770e+02 GT:AD:DP:GQ:PL 0/1:99,117:216:99:211,0,895 chrXIII 609003 . C T 1030.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.883;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=36.3495;MLEAC=1;MLEAF=0.500;MQ=26.98;MQ0=7;MQRankSum=2.717;QD=5.28;ReadPosRankSum=5.528;SB=-1.375e+03 GT:AD:DP:GQ:PL 0/1:22,173:195:60:1060,0,60 chrXIII 609006 . C T 1291 filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=24.7101;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=7;QD=6.90;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:1324,156,0 chrXIII 609015 . T C 444.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.060;DP=189;Dels=0.00;FS=1.191;HaplotypeScore=94.4992;MLEAC=1;MLEAF=0.500;MQ=26.61;MQ0=11;MQRankSum=1.829;QD=2.35;ReadPosRankSum=3.030;SB=-6.300e+02 GT:AD:DP:GQ:PL 0/1:99,90:189:99:474,0,523 chrXIII 609021 . A C 542.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.001;DP=187;Dels=0.00;FS=122.622;HaplotypeScore=155.6134;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=12;MQRankSum=2.349;QD=2.90;ReadPosRankSum=0.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,54:187:99:572,0,431 chrXIII 609024 . T C 511.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.956;DP=184;Dels=0.00;FS=127.978;HaplotypeScore=154.4606;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=12;MQRankSum=2.307;QD=2.78;ReadPosRankSum=1.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,54:184:99:541,0,425 chrXIII 609057 . C T 1011.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.905;DP=147;Dels=0.02;FS=184.114;HaplotypeScore=47.0588;MLEAC=1;MLEAF=0.500;MQ=27.08;MQ0=19;MQRankSum=2.967;QD=6.88;ReadPosRankSum=7.303;SB=1.75 GT:AD:DP:GQ:PL 0/1:65,79:144:99:1041,0,162 chrXIII 609084 . T C 805.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;DP=119;Dels=0.00;FS=212.902;HaplotypeScore=7.3913;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=19;MQRankSum=3.367;QD=6.76;ReadPosRankSum=4.246;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:53,66:119:55:835,0,55 chrXIII 609086 . A G 761.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.947;DP=119;Dels=0.00;FS=190.032;HaplotypeScore=6.3240;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=19;MQRankSum=4.378;QD=6.40;ReadPosRankSum=4.281;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:63,56:119:65:791,0,65 chrXIII 609090 . T C 759.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.046;DP=112;Dels=0.00;FS=186.026;HaplotypeScore=3.9620;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=19;MQRankSum=3.552;QD=6.78;ReadPosRankSum=-0.223;SB=-3.802e+01 GT:AD:DP:GQ:PL 0/1:57,55:112:43:789,0,43 chrXIII 609091 . G A 771.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.693;DP=112;Dels=0.00;FS=186.026;HaplotypeScore=3.9620;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=19;MQRankSum=3.505;QD=6.88;ReadPosRankSum=-0.442;SB=-4.302e+01 GT:AD:DP:GQ:PL 0/1:57,55:112:37:801,0,37 chrXIII 609099 . G A 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.505;DP=111;Dels=0.00;FS=206.601;HaplotypeScore=54.2204;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=19;MQRankSum=-3.586;QD=0.39;ReadPosRankSum=4.950;SB=-2.989e+00 GT:AD:DP:GQ:PL 0/1:63,42:111:73:73,0,668 chrXIII 609102 . C T 875 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;DP=105;Dels=0.00;FS=3.061;HaplotypeScore=11.7950;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=18;MQRankSum=0.378;QD=8.33;ReadPosRankSum=1.692;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:14,91:105:82:908,82,0 chrXIII 609105 . C T 883 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=99;Dels=0.00;FS=3.166;HaplotypeScore=11.7950;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=14;MQRankSum=-1.039;QD=8.92;ReadPosRankSum=1.406;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:14,84:99:82:916,82,0 chrXIII 609118 . A G 154.77 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;DP=96;Dels=0.01;FS=33.106;HaplotypeScore=50.3526;MLEAC=1;MLEAF=0.500;MQ=27.74;MQ0=10;MQRankSum=-0.444;QD=1.61;ReadPosRankSum=-2.145;SB=-1.767e+00 GT:AD:DP:GQ:PL 0/1:87,8:95:0:183,0,0 chrXIII 609126 . T A,C 263.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.724;DP=76;Dels=0.00;FS=34.257;HaplotypeScore=18.6254;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.22;MQ0=9;MQRankSum=-1.970;QD=3.46;ReadPosRankSum=0.770;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/2:12,25,38:76:99:323,111,110,189,0,197 chrXIII 609129 . C T 176.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;DP=77;Dels=0.00;FS=18.362;HaplotypeScore=29.5443;MLEAC=1;MLEAF=0.500;MQ=25.49;MQ0=8;MQRankSum=3.122;QD=2.29;ReadPosRankSum=-2.436;SB=-2.150e+02 GT:AD:DP:GQ:PL 0/1:48,28:77:99:206,0,138 chrXIII 609132 . T C 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.179;DP=75;Dels=0.00;FS=42.806;HaplotypeScore=30.5601;MLEAC=1;MLEAF=0.500;MQ=25.83;MQ0=6;MQRankSum=-2.322;QD=1.01;ReadPosRankSum=0.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,44:75:99:106,0,244 chrXIII 609135 . C T 280.21 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=74;Dels=0.00;FS=21.582;HaplotypeScore=23.3120;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=5;MQRankSum=-2.722;QD=3.79;ReadPosRankSum=-2.428;SB=-1.432e+02 GT:AD:DP:GQ:PL 1/1:8,66:74:16:313,16,0 chrXIII 609142 . A G 145.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;DP=66;Dels=0.00;FS=7.246;HaplotypeScore=30.7542;MLEAC=1;MLEAF=0.500;MQ=26.83;MQ0=0;MQRankSum=-1.020;QD=2.20;ReadPosRankSum=-2.979;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:24,42:66:64:175,0,64 chrXIII 609147 . C T 187.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.284;DP=62;Dels=0.00;FS=33.384;HaplotypeScore=25.0717;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=1;MQRankSum=-1.741;QD=3.02;ReadPosRankSum=-1.036;SB=-3.102e+01 GT:AD:DP:GQ:PL 1/1:8,54:62:3:217,3,0 chrXIII 609150 . T C 124.19 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;DP=59;Dels=0.00;FS=33.241;HaplotypeScore=21.6598;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=1;MQRankSum=-1.786;QD=2.10;ReadPosRankSum=-2.869;SB=3.80 GT:AD:DP:GQ:PL 0/1:3,35:59:3:153,0,3 chrXIII 609159 . C T 28.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;DP=25;Dels=0.00;FS=21.875;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=3;MQRankSum=-2.487;QD=1.12;ReadPosRankSum=-1.339;SB=-3.108e+01 GT:AD:DP:GQ:PL 0/1:6,19:25:15:58,0,15 chrXIII 609171 . C T 10.45 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;DP=21;Dels=0.00;FS=23.096;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=3;MQRankSum=-2.251;QD=0.50;ReadPosRankSum=0.829;SB=-1.305e+01 GT:AD:DP:GQ:PL 0/1:6,15:21:18:40,0,18 chrXIII 609189 . T C 31.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;DP=20;Dels=0.00;FS=22.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=3;MQRankSum=-1.197;QD=1.56;ReadPosRankSum=1.323;SB=-1.323e+01 GT:AD:DP:GQ:PL 0/1:6,14:20:10:61,0,10 chrXIII 609192 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.599;DP=23;Dels=0.00;FS=18.724;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=3;MQRankSum=-1.370;QD=1.96;ReadPosRankSum=1.748;SB=-1.398e+01 GT:AD:DP:GQ:PL 1/1:7,16:23:9:77,9,0 chrXIII 609195 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=22;Dels=0.00;FS=12.961;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=3;MQRankSum=-0.950;QD=2.04;ReadPosRankSum=1.621;SB=-1.398e+01 GT:AD:DP:GQ:PL 1/1:6,16:22:9:77,9,0 chrXIII 609198 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.011;DP=23;Dels=0.00;FS=13.409;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=3;MQRankSum=-0.953;QD=1.87;ReadPosRankSum=1.164;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:6,17:23:9:75,9,0 chrXIII 609207 . G T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=3;QD=1.45;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:3,12:15:6:53,6,0 chrXIII 609210 . A C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=3;QD=1.28;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:3,14:17:6:53,6,0 chrXIII 609219 . T G 14.28 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DP=30;Dels=0.00;FS=15.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.82;MQ0=4;MQRankSum=-0.241;QD=0.48;ReadPosRankSum=0.803;SB=-2.086e+01 GT:AD:DP:GQ:PL 0/1:5,25:30:13:44,0,13 chrXIII 609225 . C T 67.51 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.03;MQ0=4;QD=1.73;SB=-1.153e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:12:100,12,0 chrXIII 609231 . C T 131.06 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.2512;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=4;QD=2.11;SB=-1.131e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:21:164,21,0 chrXIII 609288 . C T 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.392;DP=327;Dels=0.00;FS=49.489;HaplotypeScore=99.8427;MLEAC=1;MLEAF=0.500;MQ=30.45;MQ0=55;MQRankSum=-2.373;QD=0.28;ReadPosRankSum=-0.975;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,78:327:99:123,0,3505 chrXIII 609297 . G T 2917.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.284;DP=342;Dels=0.00;FS=74.466;HaplotypeScore=97.3300;MLEAC=1;MLEAF=0.500;MQ=32.78;MQ0=56;MQRankSum=5.553;QD=8.53;ReadPosRankSum=-0.079;SB=-1.178e+03 GT:AD:DP:GQ:PL 0/1:138,204:342:99:2947,0,1055 chrXIII 609303 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.822;DP=355;Dels=0.00;FS=51.210;HaplotypeScore=64.7781;MLEAC=1;MLEAF=0.500;MQ=34.24;MQ0=56;MQRankSum=-5.182;QD=0.03;ReadPosRankSum=-2.701;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:270,85:355:41:41,0,4563 chrXIII 609323 . A G 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.645;DP=406;Dels=0.00;FS=15.191;HaplotypeScore=74.6101;MLEAC=1;MLEAF=0.500;MQ=37.60;MQ0=51;MQRankSum=-4.584;QD=0.07;ReadPosRankSum=6.768;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:356,47:406:59:59,0,5424 chrXIII 609346 . G A 907.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.005;DP=500;Dels=0.00;FS=7.999;HaplotypeScore=219.1278;MLEAC=1;MLEAF=0.500;MQ=40.53;MQ0=14;MQRankSum=-11.362;QD=1.81;ReadPosRankSum=-1.963;SB=-3.460e+02 GT:AD:DP:GQ:PL 0/1:307,185:498:99:937,0,5051 chrXIII 609348 . T C 447.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.824;DP=508;Dels=0.00;FS=173.373;HaplotypeScore=224.9264;MLEAC=1;MLEAF=0.500;MQ=40.59;MQ0=12;MQRankSum=-9.117;QD=0.88;ReadPosRankSum=3.266;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:377,131:508:99:477,0,6624 chrXIII 609378 . A C 3477.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.410;DP=508;Dels=0.01;FS=0.000;HaplotypeScore=129.3695;MLEAC=1;MLEAF=0.500;MQ=39.90;MQ0=10;MQRankSum=11.076;QD=6.84;ReadPosRankSum=-4.702;SB=-1.871e+03 GT:AD:DP:GQ:PL 0/1:211,288:505:99:3477,0,1770 chrXIII 609381 . T C 3311.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.667;DP=500;Dels=0.00;FS=2.518;HaplotypeScore=113.5722;MLEAC=1;MLEAF=0.500;MQ=39.83;MQ0=12;MQRankSum=11.103;QD=6.62;ReadPosRankSum=-4.298;SB=-1.802e+03 GT:AD:DP:GQ:PL 0/1:213,286:500:99:3311,0,1839 chrXIII 609429 . C T 766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.097;DP=423;Dels=0.00;FS=0.455;HaplotypeScore=44.0961;MLEAC=1;MLEAF=0.500;MQ=35.73;MQ0=21;MQRankSum=-5.149;QD=1.81;ReadPosRankSum=-5.587;SB=-2.140e+02 GT:AD:DP:GQ:PL 0/1:313,102:423:99:796,0,3503 chrXIII 609441 . T C 507.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;DP=348;Dels=0.00;FS=23.645;HaplotypeScore=74.4520;MLEAC=1;MLEAF=0.500;MQ=34.12;MQ0=20;MQRankSum=-7.045;QD=1.46;ReadPosRankSum=-2.467;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:235,111:348:99:537,0,3085 chrXIII 609489 . T C 4198.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.507;DP=269;Dels=0.00;FS=22.997;HaplotypeScore=53.1357;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=7;MQRankSum=6.673;QD=15.61;ReadPosRankSum=0.306;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:40,228:269:99:4198,346,0 chrXIII 609579 . T C 7142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=336;Dels=0.00;FS=4.538;HaplotypeScore=48.4076;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=1;MQRankSum=0.127;QD=21.26;ReadPosRankSum=3.420;SB=-3.820e+03 GT:AD:DP:GQ:PL 1/1:4,332:336:99:7142,825,0 chrXIII 609681 . C T 2380.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;DP=451;Dels=0.04;FS=2.975;HaplotypeScore=216.1228;MLEAC=1;MLEAF=0.500;MQ=30.86;MQ0=31;MQRankSum=3.125;QD=5.28;ReadPosRankSum=1.119;SB=-9.030e+02 GT:AD:DP:GQ:PL 0/1:262,167:432:99:2410,0,3196 chrXIII 609690 . G T 249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.392;DP=372;Dels=0.00;FS=46.447;HaplotypeScore=316.2388;MLEAC=1;MLEAF=0.500;MQ=30.21;MQ0=27;MQRankSum=-2.444;QD=0.67;ReadPosRankSum=-3.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:302,62:372:99:279,0,3775 chrXIII 609696 . T C 1923.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.986;DP=314;Dels=0.00;FS=2.392;HaplotypeScore=241.7717;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=25;MQRankSum=1.497;QD=6.12;ReadPosRankSum=5.653;SB=-5.680e+02 GT:AD:DP:GQ:PL 0/1:150,155:314:99:1953,0,1426 chrXIII 609708 . C T 615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;DP=277;Dels=0.01;FS=19.456;HaplotypeScore=87.8145;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=23;MQRankSum=-0.184;QD=2.22;ReadPosRankSum=-0.488;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:190,82:275:99:645,0,2001 chrXIII 609710 . G A 759.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.351;DP=259;Dels=0.01;FS=11.294;HaplotypeScore=102.8939;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=23;MQRankSum=-0.776;QD=2.93;ReadPosRankSum=-1.026;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:164,93:257:99:789,0,1739 chrXIII 609723 . G A 887.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.933;DP=241;Dels=0.00;FS=3.420;HaplotypeScore=163.3551;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=16;MQRankSum=-0.326;QD=3.68;ReadPosRankSum=-3.651;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,109:241:99:917,0,1321 chrXIII 609729 . T C 261.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.835;DP=247;Dels=0.00;FS=80.146;HaplotypeScore=146.3493;MLEAC=1;MLEAF=0.500;MQ=28.58;MQ0=13;MQRankSum=-0.834;QD=1.06;ReadPosRankSum=-3.733;SB=-4.830e+02 GT:AD:DP:GQ:PL 0/1:158,88:247:99:291,0,2134 chrXIII 609739 . G A 1799.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.067;DP=257;Dels=0.00;FS=106.353;HaplotypeScore=228.4045;MLEAC=1;MLEAF=0.500;MQ=31.64;MQ0=4;MQRankSum=-0.999;QD=7.00;ReadPosRankSum=3.258;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,139:257:99:1829,0,727 chrXIII 609741 . T C 1508.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550;DP=257;Dels=0.00;FS=122.804;HaplotypeScore=277.7642;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=3;MQRankSum=-2.356;QD=5.87;ReadPosRankSum=4.606;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,153:256:99:1538,0,818 chrXIII 609744 . T C 389.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.922;DP=255;Dels=0.00;FS=70.260;HaplotypeScore=470.0469;MLEAC=1;MLEAF=0.500;MQ=31.56;MQ0=2;MQRankSum=-0.447;QD=1.53;ReadPosRankSum=5.157;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,80:254:99:419,0,2103 chrXIII 609747 . C A 2824.04 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=565.8830;MLEAC=1;MLEAF=0.500;MQ=31.71;MQ0=1;MQRankSum=-1.407;QD=11.53;ReadPosRankSum=1.714;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,192:245:99:2857,315,0 chrXIII 609750 . C T 2497 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=8.431;DP=244;Dels=0.00;FS=47.381;HaplotypeScore=517.8755;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;MQRankSum=0.298;QD=10.23;ReadPosRankSum=-0.542;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:52,192:244:51:2530,51,0 chrXIII 609759 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.616;DP=249;Dels=0.00;FS=112.795;HaplotypeScore=576.5383;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;MQRankSum=-0.067;QD=6.00;ReadPosRankSum=-0.805;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:103,146:249:99:1526,177,0 chrXIII 609765 . A G 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;DP=261;Dels=0.00;FS=59.087;HaplotypeScore=714.1927;MLEAC=1;MLEAF=0.500;MQ=31.76;MQ0=0;MQRankSum=-1.095;QD=0.20;ReadPosRankSum=0.921;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,48:261:82:82,0,1277 chrXIII 609774 . T C 1148.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.399;DP=244;Dels=0.00;FS=106.903;HaplotypeScore=596.1443;MLEAC=1;MLEAF=0.500;MQ=32.08;MQ0=0;MQRankSum=1.879;QD=4.70;ReadPosRankSum=3.698;SB=-1.451e+03 GT:AD:DP:GQ:PL 0/1:98,146:244:99:1178,0,737 chrXIII 609777 . T A 894.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.705;DP=267;Dels=0.00;FS=161.663;HaplotypeScore=584.9136;MLEAC=1;MLEAF=0.500;MQ=31.79;MQ0=0;MQRankSum=-0.469;QD=3.35;ReadPosRankSum=-6.086;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,91:267:99:924,0,1485 chrXIII 609786 . C T 840.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.999;DP=300;Dels=0.00;FS=198.799;HaplotypeScore=158.6654;MLEAC=1;MLEAF=0.500;MQ=31.27;MQ0=0;MQRankSum=0.343;QD=2.80;ReadPosRankSum=-7.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,97:300:99:870,0,1760 chrXIII 609793 . G A 477.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.484;DP=300;Dels=0.00;FS=45.789;HaplotypeScore=246.8844;MLEAC=1;MLEAF=0.500;MQ=31.21;MQ0=0;MQRankSum=-0.409;QD=1.59;ReadPosRankSum=-8.370;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:207,93:300:99:507,0,1963 chrXIII 609795 . T C 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.284;DP=298;Dels=0.00;FS=21.350;HaplotypeScore=249.2588;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=0;MQRankSum=-0.441;QD=0.11;ReadPosRankSum=-4.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,53:298:63:63,0,2307 chrXIII 609804 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.957;DP=235;Dels=0.00;FS=121.478;HaplotypeScore=269.5221;MLEAC=1;MLEAF=0.500;MQ=31.88;MQ0=0;MQRankSum=-0.032;QD=0.09;ReadPosRankSum=-3.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,45:235:52:52,0,1646 chrXIII 609834 . T C 769.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.809;DP=185;Dels=0.00;FS=17.336;HaplotypeScore=175.9966;MLEAC=1;MLEAF=0.500;MQ=29.20;MQ0=0;MQRankSum=2.277;QD=4.16;ReadPosRankSum=-0.932;SB=-8.400e+02 GT:AD:DP:GQ:PL 0/1:84,100:185:99:799,0,590 chrXIII 609839 . A G 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.370;DP=183;Dels=0.00;FS=0.810;HaplotypeScore=116.3043;MLEAC=1;MLEAF=0.500;MQ=29.51;MQ0=0;MQRankSum=0.454;QD=0.47;ReadPosRankSum=-7.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,25:183:99:116,0,875 chrXIII 609992 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3996;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=19.41;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1741,195,0 chrXIII 609996 . T C 1674 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.2725;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=19.24;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1707,192,0 chrXIII 610059 . G T 2769 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=19.64;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2802,306,0 chrXIII 610070 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.2790;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.56;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2912,324,0 chrXIII 610099 . T A 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.617;QD=20.84;ReadPosRankSum=1.686;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3180,351,0 chrXIII 610293 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=17.4395;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=17.80;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3346,363,0 chrXIII 610501 . C G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3338,390,0 chrXIII 610660 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=4.204;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.050;QD=22.83;ReadPosRankSum=1.682;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4772,537,0 chrXIII 610762 . T C 4951.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.16;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4951,582,0 chrXIII 611569 . A G 4950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.687;QD=22.20;ReadPosRankSum=1.685;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:4950,564,0 chrXIII 611899 . C G 2342 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.19;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2375,264,0 chrXIII 611909 . T A 2431 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.32;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2464,267,0 chrXIII 612029 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.99;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2386,261,0 chrXIII 612269 . T C 2538 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.46;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2571,288,0 chrXIII 612304 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.49;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2923,318,0 chrXIII 612492 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.05;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2436,264,0 chrXIII 612545 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=137;Dels=0.00;FS=2.794;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.404;QD=21.94;ReadPosRankSum=2.342;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3039,348,0 chrXIII 612580 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.05;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3112,339,0 chrXIII 612702 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2268,249,0 chrXIII 612804 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.262;QD=22.66;ReadPosRankSum=1.707;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3250,369,0 chrXIII 612918 . A C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.632;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.126;QD=23.53;ReadPosRankSum=1.674;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2904,336,0 chrXIII 613158 . T C 3143 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.29;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3176,372,0 chrXIII 613260 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6115;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.307;QD=21.84;ReadPosRankSum=1.683;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3134,354,0 chrXIII 613284 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.84;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2972,333,0 chrXIII 613324 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.87;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3271,354,0 chrXIII 613383 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.64;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2781,315,0 chrXIII 613424 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.03;FS=0.000;HaplotypeScore=7.6322;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=19.99;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2292,249,0 chrXIII 613425 . T A 2201 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.03;FS=0.000;HaplotypeScore=7.6322;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.83;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2234,243,0 chrXIII 613437 . T A 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=111;Dels=0.00;FS=6.113;HaplotypeScore=5.9000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-0.846;QD=18.59;ReadPosRankSum=2.937;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2096,234,0 chrXIII 613501 . T C 2566 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.89;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2599,294,0 chrXIII 613508 . A T 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.715;QD=20.82;ReadPosRankSum=1.705;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2656,291,0 chrXIII 613656 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.57;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3559,402,0 chrXIII 613737 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8717;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.70;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3366,384,0 chrXIII 614145 . T C 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=3.210;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.796;QD=21.09;ReadPosRankSum=1.670;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2395,273,0 chrXIII 614170 . C G 2314 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.63;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2347,267,0 chrXIII 614450 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=9.239;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.532;QD=24.12;ReadPosRankSum=2.415;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3401,384,0 chrXIII 614524 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3512,381,0 chrXIII 614840 . A G 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.464;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.638;QD=21.42;ReadPosRankSum=1.670;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2453,282,0 chrXIII 614847 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.79;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2561,276,0 chrXIII 614990 . T G 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.110;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.457;QD=23.25;ReadPosRankSum=1.653;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2102,240,0 chrXIII 615226 . G T 2393 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.67;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2426,264,0 chrXIII 615436 . T A 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.551;QD=24.18;ReadPosRankSum=1.712;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4255,489,0 chrXIII 615485 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.7407;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.29;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3862,414,0 chrXIII 615554 . T G 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.296;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7779;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.709;QD=21.87;ReadPosRankSum=1.504;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3324,384,0 chrXIII 615603 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.380;QD=21.36;ReadPosRankSum=1.690;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3524,408,0 chrXIII 615663 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.8076;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.07;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3951,432,0 chrXIII 615950 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8528;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.47;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3567,408,0 chrXIII 616086 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.8967;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.37;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4360,513,0 chrXIII 616262 . A G 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.7010;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.699;QD=21.99;ReadPosRankSum=1.682;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4595,522,0 chrXIII 616459 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=141;Dels=0.01;FS=3.537;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.916;QD=20.80;ReadPosRankSum=1.633;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2966,336,0 chrXIII 616481 . A G 2474 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.62;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2507,291,0 chrXIII 616649 . T C 3124 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.67;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3157,357,0 chrXIII 617093 . A T 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.685;DP=233;Dels=0.00;FS=5.440;HaplotypeScore=20.6693;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.065;QD=22.55;ReadPosRankSum=2.970;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:5254,582,0 chrXIII 617306 . A T 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=215;Dels=0.00;FS=6.760;HaplotypeScore=14.5872;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.234;QD=22.42;ReadPosRankSum=2.358;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4820,543,0 chrXIII 617657 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.217;QD=20.57;ReadPosRankSum=1.714;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3950,450,0 chrXIII 617828 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.21;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3143,354,0 chrXIII 618032 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.0863;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.47;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3089,345,0 chrXIII 618075 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.43;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2949,327,0 chrXIII 618249 . T G 1362 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;QD=18.41;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1395,159,0 chrXIII 618325 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.913;QD=19.04;ReadPosRankSum=2.392;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1651,186,0 chrXIII 618328 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.617;QD=18.71;ReadPosRankSum=1.692;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1661,186,0 chrXIII 618484 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.60;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2632,303,0 chrXIII 618673 . T G 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.700;QD=23.28;ReadPosRankSum=1.700;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5028,573,0 chrXIII 618959 . C T 4806.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.55;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4806,519,0 chrXIII 619353 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=23.31;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2201,237,0 chrXIII 619660 . A G 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=121;Dels=0.00;FS=14.316;HaplotypeScore=10.9910;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.592;QD=18.20;ReadPosRankSum=2.892;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2235,255,0 chrXIII 619714 . G T 2563 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.8466;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.72;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2596,282,0 chrXIII 619822 . G T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.30;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4381,489,0 chrXIII 619995 . G T 4531.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.90;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4531,513,0 chrXIII 620025 . C T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.53;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4142,462,0 chrXIII 620208 . C T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.37;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3318,366,0 chrXIII 620381 . T C 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.839;QD=21.87;ReadPosRankSum=1.678;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,127:132:99:2920,330,0 chrXIII 620388 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.05;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2790,303,0 chrXIII 620454 . G T 1745 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.53;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1778,198,0 chrXIII 620664 . A G 2334 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.22;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2367,276,0 chrXIII 620984 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.90;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3962,447,0 chrXIII 621112 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=168;Dels=0.00;FS=2.719;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.300;QD=21.55;ReadPosRankSum=2.406;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3621,408,0 chrXIII 621234 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.62;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2627,309,0 chrXIII 621269 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=17.51;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2730,297,0 chrXIII 621270 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=16.82;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2607,297,0 chrXIII 621489 . C G 3970.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.69;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3970,453,0 chrXIII 621594 . A G 2948 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.68;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2981,339,0 chrXIII 621798 . T A 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=2.917;HaplotypeScore=13.1633;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.668;QD=22.78;ReadPosRankSum=2.382;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4168,462,0 chrXIII 622063 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.105;QD=20.25;ReadPosRankSum=1.672;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2382,270,0 chrXIII 622076 . T G 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=124;Dels=0.00;FS=12.448;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.479;QD=20.03;ReadPosRankSum=1.704;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2517,282,0 chrXIII 622122 . A C 1597 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=20.47;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1630,186,0 chrXIII 622209 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0288;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.64;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1764,204,0 chrXIII 622536 . A T 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.361;QD=24.23;ReadPosRankSum=1.708;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3489,387,0 chrXIII 622554 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.45;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3057,348,0 chrXIII 622608 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.97;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2499,282,0 chrXIII 622620 . G C 2296 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.4310;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.98;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2329,267,0 chrXIII 622664 . T G 3687.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.60;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3687,438,0 chrXIII 622747 . T G 4013.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.93;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4013,476,0 chrXIII 622927 . G T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.25;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4428,483,0 chrXIII 623124 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.70;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2620,297,0 chrXIII 623127 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.72;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2665,297,0 chrXIII 623432 . A C 1077 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.41;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1110,129,0 chrXIII 623505 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.19;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1406,153,0 chrXIII 623510 . T C 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.891;QD=18.21;ReadPosRankSum=1.683;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1308,150,0 chrXIII 623868 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.29;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3789,420,0 chrXIII 624027 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.5875;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.01;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3014,339,0 chrXIII 624297 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.06;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3750,429,0 chrXIII 624603 . T A 5916.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.7244;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.93;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5916,654,0 chrXIII 624720 . G T 8800.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.24;SB=-4.143e+03 GT:AD:DP:GQ:PL 1/1:0,362:363:99:8800,958,0 chrXIII 624780 . C T 6313.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=17.1647;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.39;SB=-3.566e+03 GT:AD:DP:GQ:PL 1/1:0,278:282:99:6313,699,0 chrXIII 624949 . A G 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.3542;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.234;QD=20.91;ReadPosRankSum=1.719;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:5437,627,0 chrXIII 625245 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.92;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4275,489,0 chrXIII 625772 . A G 564 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=12.00;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,44:47:69:597,69,0 chrXIII 625844 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.17;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1889,222,0 chrXIII 625856 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.88;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2246,246,0 chrXIII 626052 . C T 4927.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.2020;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.64;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4927,531,0 chrXIII 626104 . G C 4710.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.5432;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.01;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4710,540,0 chrXIII 626217 . T A 4373.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.51;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4373,471,0 chrXIII 626227 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=4.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-1.155;QD=21.58;ReadPosRankSum=1.713;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3884,438,0 chrXIII 626342 . T G 2302 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.72;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2335,273,0 chrXIII 626417 . A C 2099 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.62;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2132,246,0 chrXIII 626430 . A G 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.669;DP=100;Dels=0.00;FS=7.604;HaplotypeScore=7.2623;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.870;QD=18.55;ReadPosRankSum=3.748;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:5,95:100:99:1888,216,0 chrXIII 627290 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4237,462,0 chrXIII 627607 . G A 5729.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.58;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5729,627,0 chrXIII 627725 . A G 5970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=274;Dels=0.00;FS=6.005;HaplotypeScore=12.0289;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.805;QD=21.79;ReadPosRankSum=2.916;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:4,270:274:99:5970,687,0 chrXIII 627799 . C T 5498.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=19.8652;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.91;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5498,600,0 chrXIII 627939 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.6066;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.43;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4328,468,0 chrXIII 628338 . T C 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=166;Dels=0.00;FS=2.979;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.482;QD=22.67;ReadPosRankSum=2.420;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3764,435,0 chrXIII 628413 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.10;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3031,342,0 chrXIII 628415 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=19.69;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3183,351,0 chrXIII 628464 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=14.88;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2340,267,0 chrXIII 628471 . A G 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.938;QD=14.60;ReadPosRankSum=0.695;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2325,267,0 chrXIII 628516 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=13.36;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2063,225,0 chrXIII 628538 . A G 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.636;QD=14.06;ReadPosRankSum=2.413;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:1903,216,0 chrXIII 628650 . A G 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=0.166;QD=17.93;ReadPosRankSum=1.685;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1342,156,0 chrXIII 628879 . T G 1316 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1607;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.69;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1349,156,0 chrXIII 628982 . T A 2111 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.84;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2144,249,0 chrXIII 629060 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.46;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2918,318,0 chrXIII 629269 . T C 4576.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.23;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4576,519,0 chrXIII 629294 . G A 4840.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.27;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4840,520,0 chrXIII 629399 . G A 5069.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.7219;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.36;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5069,564,0 chrXIII 629793 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.0761;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.40;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4318,468,0 chrXIII 630246 . T A 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=4.133;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.017;QD=18.42;ReadPosRankSum=1.629;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1893,210,0 chrXIII 630249 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.07;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1840,207,0 chrXIII 630308 . C A 2196 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.74;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2229,243,0 chrXIII 630977 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.06;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2702,309,0 chrXIII 631615 . A G 4884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=216;Dels=0.00;FS=6.947;HaplotypeScore=15.6599;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.366;QD=22.61;ReadPosRankSum=2.426;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:2,211:216:99:4884,564,0 chrXIII 631977 . A G 2833 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.8633;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.14;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2866,327,0 chrXIII 632030 . A C 2833 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.46;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2866,324,0 chrXIII 632072 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.43;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2702,309,0 chrXIII 632096 . T A 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.675;QD=24.29;ReadPosRankSum=1.696;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2341,249,0 chrXIII 632118 . T C 1672 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.90;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1705,198,0 chrXIII 632194 . G A 1682 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.84;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1715,186,0 chrXIII 632199 . T C 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.211;QD=19.22;ReadPosRankSum=1.648;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1609,189,0 chrXIII 632257 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.9557;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.38;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2214,249,0 chrXIII 632363 . T G 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.155;DP=91;Dels=0.02;FS=81.330;HaplotypeScore=40.2458;MLEAC=1;MLEAF=0.500;MQ=57.94;MQ0=0;MQRankSum=0.342;QD=0.29;ReadPosRankSum=-1.613;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,37:89:56:56,0,901 chrXIII 633137 . A G 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DP=169;Dels=0.00;FS=2.103;HaplotypeScore=14.0842;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.661;QD=23.37;ReadPosRankSum=2.649;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3949,444,0 chrXIII 633458 . A G 3843.01 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.3836;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=16;QD=19.61;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3843,429,0 chrXIII 633557 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=3;QD=24.23;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4459,489,0 chrXIII 633794 . G A 4915.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1534;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.33;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4915,534,0 chrXIII 633893 . G A 4892.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=19.1953;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=2;QD=21.46;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4892,534,0 chrXIII 634256 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2772,309,0 chrXIII 634298 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.74;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1533,171,0 chrXIII 634558 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.66;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1547,174,0 chrXIII 634582 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.72;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1699,195,0 chrXIII 634615 . T C 1157 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=14.11;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1190,135,0 chrXIII 634628 . G A 636 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=9.49;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:78:669,78,0 chrXIII 634630 . C A 656 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=10.41;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:72:689,72,0 chrXIII 634668 . G A 756 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=13.50;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:90:789,90,0 chrXIII 634683 . A G 875 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.62;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:908,102,0 chrXIII 634734 . A G 2309 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.62;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2342,276,0 chrXIII 635033 . A G 2331 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2364,270,0 chrXIII 635124 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=6.749;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.237;QD=23.58;ReadPosRankSum=2.418;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3702,423,0 chrXIII 635337 . T G 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=206;Dels=0.00;FS=3.231;HaplotypeScore=13.4701;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.543;QD=22.50;ReadPosRankSum=1.698;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,201:206:99:4636,528,0 chrXIII 635402 . A G 4727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.3147;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.546;QD=22.95;ReadPosRankSum=1.698;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4727,537,0 chrXIII 635501 . G A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.85;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4086,450,0 chrXIII 635513 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=181;Dels=0.00;FS=2.923;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.115;QD=20.68;ReadPosRankSum=2.409;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3743,414,0 chrXIII 635544 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2057;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.78;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3226,363,0 chrXIII 636008 . G C 1906 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1939,222,0 chrXIII 636081 . G C 2607 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2640,300,0 chrXIII 636208 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2808,306,0 chrXIII 636317 . T C 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.049;HaplotypeScore=10.6376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.751;QD=22.46;ReadPosRankSum=1.701;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2571,294,0 chrXIII 636750 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.972;QD=21.72;ReadPosRankSum=1.641;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2509,291,0 chrXIII 637295 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.84;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4411,480,0 chrXIII 638784 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.60;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4068,456,0 chrXIII 639659 . C T 5126.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.4395;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.27;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5126,579,0 chrXIII 640076 . T C 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=209;Dels=0.00;FS=16.584;HaplotypeScore=14.8902;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.824;QD=22.94;ReadPosRankSum=3.401;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:4,204:209:99:4795,549,0 chrXIII 640295 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2916;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.34;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3708,414,0 chrXIII 640619 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=6.396;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.805;QD=20.78;ReadPosRankSum=1.710;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3324,393,0 chrXIII 640717 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.15;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2270,249,0 chrXIII 640720 . G C 2102 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.45;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2135,243,0 chrXIII 640737 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.69;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2072,228,0 chrXIII 640930 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.87;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2635,300,0 chrXIII 641090 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.01;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3621,411,0 chrXIII 641091 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=7.600;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.995;QD=19.74;ReadPosRankSum=2.356;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3633,411,0 chrXIII 641548 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=6.429;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.463;QD=20.17;ReadPosRankSum=2.380;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:2938,345,0 chrXIII 641634 . C A 5327.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5327,577,0 chrXIII 642208 . C T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.56;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4940,546,0 chrXIII 642331 . G T 5320.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.40;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5320,585,0 chrXIII 642868 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2932,324,0 chrXIII 643078 . G T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.69;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3388,378,0 chrXIII 643657 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4054,438,0 chrXIII 643766 . C G 4379.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.6870;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.26;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4379,498,0 chrXIII 643873 . A G 4521.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.63;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4521,516,0 chrXIII 643979 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.749;DP=201;Dels=0.00;FS=10.111;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.147;QD=21.21;ReadPosRankSum=4.136;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:6,194:201:99:4264,480,0 chrXIII 644092 . A G 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=225;Dels=0.00;FS=3.355;HaplotypeScore=17.4842;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.536;QD=20.80;ReadPosRankSum=1.717;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:4680,546,0 chrXIII 644367 . C A 4813.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.18;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4813,519,0 chrXIII 644390 . G A 4702.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.97;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4702,510,0 chrXIII 644973 . T G 6271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=291;Dels=0.00;FS=3.552;HaplotypeScore=15.8882;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.693;QD=21.55;ReadPosRankSum=1.720;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:1,290:291:99:6271,705,0 chrXIII 645040 . C A 7205.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=16.2830;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.52;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:0,320:320:99:7205,816,0 chrXIII 645101 . T C 4715.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.3103;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.24;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4715,537,0 chrXIII 645268 . G C 2261 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.9378;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.66;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2294,261,0 chrXIII 645302 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=19.44;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1899,213,0 chrXIII 645420 . A T 2026 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.02;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2059,225,0 chrXIII 645425 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.78;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1903,210,0 chrXIII 645754 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.76;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2780,312,0 chrXIII 645786 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.5773;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.73;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3141,342,0 chrXIII 645859 . G T 2997 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.26;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3030,339,0 chrXIII 645893 . T G 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=3.505;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=-0.133;QD=17.16;ReadPosRankSum=1.626;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2281,261,0 chrXIII 645914 . C G 1821 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=16.41;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:1854,213,0 chrXIII 645925 . T C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.127;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;MQRankSum=-0.751;QD=14.16;ReadPosRankSum=1.671;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1633,186,0 chrXIII 645935 . T A 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;MQRankSum=-1.206;QD=14.70;ReadPosRankSum=1.677;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1870,210,0 chrXIII 645941 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=15.12;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2014,219,0 chrXIII 646115 . A G 3150 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.50;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3183,360,0 chrXIII 646181 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.89;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4456,486,0 chrXIII 646241 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=172;Dels=0.00;FS=9.187;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=2.197;QD=22.16;ReadPosRankSum=2.899;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:3,166:172:99:3811,435,0 chrXIII 646336 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5138;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3576,414,0 chrXIII 646440 . A G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=155;Dels=0.00;FS=5.965;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.431;QD=20.58;ReadPosRankSum=2.955;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3223,366,0 chrXIII 646658 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.18;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2693,288,0 chrXIII 646699 . G T 1383 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.76;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1416,156,0 chrXIII 646817 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.00;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1965,213,0 chrXIII 646860 . A G 372 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.252;QD=14.88;ReadPosRankSum=2.254;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,23:25:48:405,48,0 chrXIII 646966 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2639,291,0 chrXIII 647164 . G T 4152.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.57;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4152,468,0 chrXIII 647329 . G C 3084 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.56;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,142:150:99:3117,354,0 chrXIII 647375 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.68;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3053,330,0 chrXIII 647397 . C G 2214 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=16.04;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2247,261,0 chrXIII 647406 . A G 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=128;Dels=0.00;FS=6.407;HaplotypeScore=7.6688;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-0.474;QD=15.46;ReadPosRankSum=2.411;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2012,231,0 chrXIII 647456 . C G 1508 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.6356;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=14.64;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1541,180,0 chrXIII 647871 . T C 2100 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.83;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2133,240,0 chrXIII 648168 . T A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4294,468,0 chrXIII 648335 . A G 3118 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.65;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3151,357,0 chrXIII 648575 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3088,348,0 chrXIII 648617 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=149;Dels=0.00;FS=2.600;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.639;QD=23.85;ReadPosRankSum=2.416;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3554,408,0 chrXIII 648680 . T C 3174 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.69;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3207,369,0 chrXIII 648703 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=8.130;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.216;QD=22.01;ReadPosRankSum=2.380;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3158,354,0 chrXIII 648809 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=162;Dels=0.00;FS=2.844;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.837;QD=22.91;ReadPosRankSum=2.404;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3711,423,0 chrXIII 649064 . G A 2020 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2053,228,0 chrXIII 649106 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1966,213,0 chrXIII 649250 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.78;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1743,189,0 chrXIII 649387 . A G 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=5.883;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.019;QD=24.16;ReadPosRankSum=1.695;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2280,258,0 chrXIII 649473 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.98;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2425,273,0 chrXIII 649497 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.80;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2655,297,0 chrXIII 649520 . A C 2900 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.97;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2933,333,0 chrXIII 649712 . C G 2688 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.85;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2721,309,0 chrXIII 649796 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.95;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2993,324,0 chrXIII 649834 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.21;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2498,279,0 chrXIII 649889 . T C 2101 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.64;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2134,246,0 chrXIII 649905 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.623;DP=130;Dels=0.00;FS=7.541;HaplotypeScore=13.3565;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.338;QD=18.95;ReadPosRankSum=4.100;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:6,124:130:99:2496,279,0 chrXIII 650015 . A G 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=3.056;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.383;QD=23.15;ReadPosRankSum=1.586;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2232,252,0 chrXIII 650147 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.951;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.135;QD=22.54;ReadPosRankSum=1.665;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3471,402,0 chrXIII 650708 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.38;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2511,276,0 chrXIII 650714 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9273;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=1.575;QD=21.97;ReadPosRankSum=1.701;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2472,282,0 chrXIII 650863 . C A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6530;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.01;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3250,366,0 chrXIII 650910 . A C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415;DP=143;Dels=0.00;FS=3.134;HaplotypeScore=6.5949;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-0.049;QD=23.77;ReadPosRankSum=1.098;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3399,353,0 chrXIII 650971 . A C 115.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=154;Dels=0.01;FS=3.594;HaplotypeScore=133.4470;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.791;QD=0.75;ReadPosRankSum=1.709;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:18:148,18,0 chrXIII 650997 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.72;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3089,342,0 chrXIII 651148 . A G 3033 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.82;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3066,342,0 chrXIII 651277 . A G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.986;QD=21.96;ReadPosRankSum=1.702;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2624,297,0 chrXIII 651500 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4263;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.277;QD=23.12;ReadPosRankSum=1.667;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3722,426,0 chrXIII 652003 . A G 1409 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=23.48;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1442,168,0 chrXIII 652186 . A G 1444 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.51;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1477,168,0 chrXIII 652187 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.49;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1529,168,0 chrXIII 652277 . T C 863 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=11.99;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:896,105,0 chrXIII 652413 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.20;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2237,249,0 chrXIII 652621 . C T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0879;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.77;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3757,402,0 chrXIII 652690 . A C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.5304;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.852;QD=20.02;ReadPosRankSum=1.657;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3744,417,0 chrXIII 652735 . A C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=186;Dels=0.00;FS=2.773;HaplotypeScore=7.4449;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.746;QD=20.90;ReadPosRankSum=2.397;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3887,444,0 chrXIII 652744 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=21.55;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3814,432,0 chrXIII 652911 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.95;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3520,384,0 chrXIII 652971 . C G 1060 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=7.21;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:1093,126,0 chrXIII 652978 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=9.44;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1440,159,0 chrXIII 653063 . C A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.41;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3832,423,0 chrXIII 653200 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=22.27;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4343,474,0 chrXIII 653300 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=174;Dels=0.00;FS=9.898;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=2.246;QD=20.59;ReadPosRankSum=2.936;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:3,169:174:99:3583,426,0 chrXIII 653398 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.55;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4615,528,0 chrXIII 653427 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.7185;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.84;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3746,429,0 chrXIII 653486 . G T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.92;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3851,435,0 chrXIII 653528 . C G 4116.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.49;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4116,474,0 chrXIII 653617 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.5151;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.54;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2554,288,0 chrXIII 653809 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.85;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1475,168,0 chrXIII 653832 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.86;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1607,180,0 chrXIII 654563 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6186;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.15;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3519,387,0 chrXIII 654590 . A G 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=7.698;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.571;QD=22.59;ReadPosRankSum=2.415;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3218,363,0 chrXIII 654624 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.531;QD=21.60;ReadPosRankSum=1.712;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3758,438,0 chrXIII 654748 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.32;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3203,348,0 chrXIII 654825 . G T 2524 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=99.3514;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.21;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2557,276,0 chrXIII 654902 . T C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.657;QD=17.37;ReadPosRankSum=1.653;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1544,177,0 chrXIII 654983 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.775;QD=19.92;ReadPosRankSum=1.648;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2483,285,0 chrXIII 655922 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=170;Dels=0.00;FS=2.761;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.022;QD=22.09;ReadPosRankSum=2.391;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3756,426,0 chrXIII 656026 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3205,375,0 chrXIII 656101 . A T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.54;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4086,450,0 chrXIII 656131 . A G 2834 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.10;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2867,321,0 chrXIII 656137 . T C 2629 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.77;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2662,309,0 chrXIII 656404 . G A 5231.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.9590;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.65;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5231,570,0 chrXIII 657064 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.79;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3497,387,0 chrXIII 657240 . G C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.94;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3469,396,0 chrXIII 657241 . C A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.67;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3596,402,0 chrXIII 657406 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.62;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2906,318,0 chrXIII 657916 . T C 6040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.748;DP=274;Dels=0.00;FS=12.193;HaplotypeScore=11.1594;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.282;QD=22.04;ReadPosRankSum=3.822;SB=-3.362e+03 GT:AD:DP:GQ:PL 1/1:5,269:274:99:6040,705,0 chrXIII 658015 . G A 6448.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=20.9412;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.87;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6448,708,0 chrXIII 658093 . G T 5391.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.56;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5391,597,0 chrXIII 658201 . T C 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=4.340;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.888;QD=21.86;ReadPosRankSum=1.715;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4394,510,0 chrXIII 658377 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.06;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2846,318,0 chrXIII 659190 . G A 4928.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.24;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4928,543,0 chrXIII 659259 . G C 3969.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3969,447,0 chrXIII 659308 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.28;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4122,450,0 chrXIII 659437 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.39;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3292,354,0 chrXIII 659687 . A G 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=17.0592;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.338;QD=21.17;ReadPosRankSum=2.349;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3188,372,0 chrXIII 659902 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.96;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4002,441,0 chrXIII 659982 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.50;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3870,447,0 chrXIII 660986 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=195;Dels=0.00;FS=7.449;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.863;QD=21.09;ReadPosRankSum=2.399;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4112,480,0 chrXIII 661121 . A T 4011.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.92;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4011,450,0 chrXIII 661195 . A T 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.578;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.626;QD=24.46;ReadPosRankSum=1.697;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4794,528,0 chrXIII 661308 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.19;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4160,453,0 chrXIII 661378 . A G 5533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=235;Dels=0.00;FS=3.798;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.966;QD=23.54;ReadPosRankSum=1.658;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5533,621,0 chrXIII 661638 . A C 5482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=263;Dels=0.00;FS=2.812;HaplotypeScore=7.5035;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.527;QD=20.84;ReadPosRankSum=2.375;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:2,261:263:99:5482,627,0 chrXIII 661650 . T C 5334.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.59;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5334,612,0 chrXIII 661676 . T C 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=252;Dels=0.00;FS=8.054;HaplotypeScore=8.2142;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.914;QD=20.11;ReadPosRankSum=2.391;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:5068,596,0 chrXIII 661764 . G A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.7687;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.35;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4654,516,0 chrXIII 662059 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=19.0975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:3493,381,0 chrXIII 662421 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=5.144;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.243;QD=22.64;ReadPosRankSum=1.691;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1957,219,0 chrXIII 662585 . A G 2386 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.89;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2419,273,0 chrXIII 662603 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.30;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2753,312,0 chrXIII 662796 . C G 3339.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.27;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,151:157:99:3339,390,0 chrXIII 662811 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.10;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3198,357,0 chrXIII 663000 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.81;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4523,510,0 chrXIII 663189 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=19.7542;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.89;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4017,459,0 chrXIII 663903 . T C 5631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=245;Dels=0.00;FS=2.386;HaplotypeScore=15.3676;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.502;QD=22.98;ReadPosRankSum=3.425;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:4,241:245:99:5631,639,0 chrXIII 663987 . C T 4830.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.56;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4830,528,0 chrXIII 664014 . T C 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=226;Dels=0.00;FS=3.546;HaplotypeScore=8.7450;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.021;QD=21.42;ReadPosRankSum=1.717;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:4842,555,0 chrXIII 664122 . A C 5267.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.59;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5267,623,0 chrXIII 664149 . C T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.20;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4552,516,0 chrXIII 664502 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3335,363,0 chrXIII 664741 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.090;QD=21.92;ReadPosRankSum=1.672;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2576,300,0 chrXIII 664811 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.56;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3346,381,0 chrXIII 665349 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.130;QD=23.36;ReadPosRankSum=1.713;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4345,471,0 chrXIII 665727 . C A 2110 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.5998;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.44;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2143,234,0 chrXIII 665811 . T C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.672;QD=22.92;ReadPosRankSum=1.651;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2004,228,0 chrXIII 666112 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.87;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3714,420,0 chrXIII 666220 . A G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.866;QD=23.08;ReadPosRankSum=1.680;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3080,345,0 chrXIII 666667 . C T 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.128;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.4533;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.614;QD=21.28;ReadPosRankSum=-0.951;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:5087,550,0 chrXIII 666892 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.5162;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.88;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3863,426,0 chrXIII 666957 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.10;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:3882,432,0 chrXIII 667024 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.4242;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.05;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3032,345,0 chrXIII 667065 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3129,351,0 chrXIII 667456 . A C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.89;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3580,411,0 chrXIII 667469 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=20.78;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3450,378,0 chrXIII 667496 . G T 3156 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.83;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3189,348,0 chrXIII 667511 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=197;Dels=0.00;FS=2.956;HaplotypeScore=11.4139;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.733;QD=16.65;ReadPosRankSum=2.374;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:3280,372,0 chrXIII 667766 . G A 7309.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=18.1027;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.28;SB=-3.642e+03 GT:AD:DP:GQ:PL 1/1:0,328:328:99:7309,799,0 chrXIII 668207 . C G 1445 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.53;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1478,168,0 chrXIII 668324 . T C 1009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.895;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.935;QD=20.59;ReadPosRankSum=2.350;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:2,47:49:99:1042,117,0 chrXIII 668408 . A G 2121 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.05;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2154,258,0 chrXIII 668902 . T G 3404.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.41;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3404,393,0 chrXIII 669285 . A C 5067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=226;Dels=0.00;FS=6.559;HaplotypeScore=15.8440;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.097;QD=22.42;ReadPosRankSum=2.428;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:5067,579,0 chrXIII 669355 . C T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.53;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4848,552,0 chrXIII 669472 . T C 4742.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.25;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4742,531,0 chrXIII 669628 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.31;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1983,216,0 chrXIII 669658 . A T 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.039;QD=19.75;ReadPosRankSum=1.696;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1909,207,0 chrXIII 669672 . T A 1856 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.33;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1889,204,0 chrXIII 669832 . A G 654 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.10;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:78:687,78,0 chrXIII 670228 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=191;Dels=0.00;FS=2.861;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.743;QD=22.80;ReadPosRankSum=2.398;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4354,495,0 chrXIII 670498 . A G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.402;QD=21.17;ReadPosRankSum=1.704;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2679,306,0 chrXIII 671020 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3753,420,0 chrXIII 671053 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.446;QD=22.76;ReadPosRankSum=1.649;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3823,438,0 chrXIII 671163 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.137;DP=185;Dels=0.00;FS=13.794;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.590;QD=20.51;ReadPosRankSum=3.346;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:4,180:185:99:3795,438,0 chrXIII 671364 . A G 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=2.923;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.102;QD=23.05;ReadPosRankSum=2.301;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3075,348,0 chrXIII 671398 . T C 2495 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.28;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2528,297,0 chrXIII 671402 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.55;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2499,279,0 chrXIII 671526 . G C 1650 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.60;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1683,189,0 chrXIII 672129 . T C 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=225;Dels=0.00;FS=4.169;HaplotypeScore=13.5753;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.874;QD=19.84;ReadPosRankSum=1.716;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,221:225:99:4464,527,0 chrXIII 672472 . T C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.500;QD=21.53;ReadPosRankSum=1.681;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2982,339,0 chrXIII 673147 . T A 6296.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=18.4189;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.23;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6296,705,0 chrXIII 673402 . G A 5533.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.7898;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.61;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5533,603,0 chrXIII 673803 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=209;Dels=0.00;FS=6.882;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.750;QD=19.44;ReadPosRankSum=2.402;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4063,465,0 chrXIII 673806 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.01;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4263,483,0 chrXIII 673846 . A G 5066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=251;Dels=0.00;FS=3.243;HaplotypeScore=10.5122;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.285;QD=20.18;ReadPosRankSum=1.718;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:5066,591,0 chrXIII 673975 . G A 5967.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.4401;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.35;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5967,684,0 chrXIII 674192 . A G 5832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=316;Dels=0.00;FS=2.565;HaplotypeScore=29.1152;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.032;QD=18.46;ReadPosRankSum=2.914;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:3,311:316:99:5832,678,0 chrXIII 674283 . C T 6271.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=19.1501;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.72;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:0,273:276:99:6271,708,0 chrXIII 674833 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.47;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1988,216,0 chrXIII 675083 . A C 2797 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.91;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2830,327,0 chrXIII 675245 . G C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.05;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3388,387,0 chrXIII 675294 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=4.956;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.770;QD=19.53;ReadPosRankSum=1.708;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2885,339,0 chrXIII 675697 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3501,402,0 chrXIII 675922 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4032,456,0 chrXIII 675970 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4599;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3987,438,0 chrXIII 676095 . A T 4880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=207;Dels=0.00;FS=6.608;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.433;QD=23.57;ReadPosRankSum=2.367;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4880,528,0 chrXIII 676154 . G C 4279.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4279,486,0 chrXIII 676426 . C T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=23.6267;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.56;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4399,504,0 chrXIII 676462 . T C 5492.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.12;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5492,630,0 chrXIII 676599 . G C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.11;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3427,387,0 chrXIII 676645 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.8836;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.350;QD=17.27;ReadPosRankSum=1.692;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3020,351,0 chrXIII 676883 . C G 1835 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6395;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.85;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1868,210,0 chrXIII 676959 . C A 2375 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2408,264,0 chrXIII 677046 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=11.3995;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.27;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1513,168,0 chrXIII 677217 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.32;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2505,279,0 chrXIII 677238 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.98;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2377,255,0 chrXIII 677418 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.15;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3301,363,0 chrXIII 677544 . A C 2760 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2793,315,0 chrXIII 678210 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.16;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3844,438,0 chrXIII 678465 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.8467;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.630;QD=17.93;ReadPosRankSum=1.715;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:3585,414,0 chrXIII 678468 . C A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.6042;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=17.98;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3543,408,0 chrXIII 678756 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.74;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3956,441,0 chrXIII 679747 . A G 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=127;Dels=0.00;FS=6.407;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.029;QD=21.90;ReadPosRankSum=2.256;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2814,318,0 chrXIII 680063 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.37;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2957,321,0 chrXIII 680399 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.323;QD=21.63;ReadPosRankSum=1.638;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2412,267,0 chrXIII 680438 . A T 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=2.969;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.076;QD=22.97;ReadPosRankSum=2.368;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2790,303,0 chrXIII 680463 . A G 2274 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.67;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2307,264,0 chrXIII 680739 . T C 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.404;QD=23.27;ReadPosRankSum=1.703;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2826,321,0 chrXIII 680769 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8866;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.55;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3048,336,0 chrXIII 680936 . T C 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.479;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.496;QD=18.58;ReadPosRankSum=2.359;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2226,252,0 chrXIII 680940 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.78;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2230,252,0 chrXIII 681495 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.00;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2985,330,0 chrXIII 681699 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.5104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.17;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3858,438,0 chrXIII 681830 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=174;Dels=0.00;FS=9.745;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.560;QD=21.31;ReadPosRankSum=2.393;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3708,435,0 chrXIII 681945 . A G 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=3.136;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.666;QD=21.37;ReadPosRankSum=1.699;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2277,270,0 chrXIII 682194 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.25;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2519,288,0 chrXIII 682377 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.22;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2699,297,0 chrXIII 682389 . T G 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=146;Dels=0.00;FS=7.622;HaplotypeScore=8.5337;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.439;QD=21.00;ReadPosRankSum=2.416;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3099,354,0 chrXIII 682560 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.31;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3193,366,0 chrXIII 683622 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.089;QD=22.90;ReadPosRankSum=1.711;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3847,438,0 chrXIII 683655 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=187;Dels=0.00;FS=8.840;HaplotypeScore=12.8945;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.713;QD=22.41;ReadPosRankSum=3.346;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:4,181:187:99:4190,477,0 chrXIII 683958 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.60;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3000,327,0 chrXIII 684171 . G A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.5310;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.76;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4347,480,0 chrXIII 684406 . A T 4872.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.24;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4872,543,0 chrXIII 685502 . T A 2500 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2533,279,0 chrXIII 685585 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5409;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.79;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2473,267,0 chrXIII 685636 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.73;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2762,300,0 chrXIII 685689 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1995,228,0 chrXIII 686613 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=167;Dels=0.00;FS=6.061;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.543;QD=22.21;ReadPosRankSum=2.921;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:3,162:167:99:3709,420,0 chrXIII 686772 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.87;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2810,303,0 chrXIII 687199 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.73;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2510,273,0 chrXIII 687331 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.52;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1575,171,0 chrXIII 687346 . A T 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=75;Dels=0.00;FS=6.007;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.041;QD=15.93;ReadPosRankSum=2.663;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1228,138,0 chrXIII 687486 . T A 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=109;Dels=0.00;FS=2.581;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.120;QD=22.07;ReadPosRankSum=2.936;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2439,264,0 chrXIII 687493 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.19;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2416,267,0 chrXIII 687551 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.71;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2556,297,0 chrXIII 687854 . A G 4408.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.3411;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.96;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4408,495,0 chrXIII 688004 . G C 4114.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.43;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4114,465,0 chrXIII 688034 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.54;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3898,459,0 chrXIII 688264 . A C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=144;Dels=0.00;FS=7.672;HaplotypeScore=13.4414;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.788;QD=21.40;ReadPosRankSum=2.415;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3115,354,0 chrXIII 688330 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.4227;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.07;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2963,324,0 chrXIII 688379 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2602,294,0 chrXIII 688707 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.86;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2119,231,0 chrXIII 688718 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.71;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1979,225,0 chrXIII 688991 . A G 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.007;DP=106;Dels=0.00;FS=6.883;HaplotypeScore=97.0081;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-0.218;QD=18.57;ReadPosRankSum=3.781;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:6,97:106:99:2001,225,0 chrXIII 689079 . A C 2302 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.13;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2335,267,0 chrXIII 689370 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=141;Dels=0.00;FS=11.521;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.123;QD=21.93;ReadPosRankSum=2.921;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:3,136:141:99:3125,357,0 chrXIII 689462 . T A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3574,390,0 chrXIII 689571 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.38;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3026,342,0 chrXIII 689685 . G C 3158 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3191,360,0 chrXIII 689746 . C A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.28;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3351,366,0 chrXIII 690170 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.2931;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.78;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3099,336,0 chrXIII 690172 . A G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.039;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.732;QD=18.85;ReadPosRankSum=1.709;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2898,333,0 chrXIII 690252 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.11;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3825,417,0 chrXIII 690406 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.59;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3546,399,0 chrXIII 690564 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.74;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3297,357,0 chrXIII 690642 . T A 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=4.279;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.231;QD=22.01;ReadPosRankSum=1.617;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3301,360,0 chrXIII 690710 . A T 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.161;DP=128;Dels=0.00;FS=3.006;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.508;QD=22.18;ReadPosRankSum=2.373;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2872,321,0 chrXIII 691064 . A T 2367 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.33;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2400,267,0 chrXIII 691343 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=3.118;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.021;QD=22.91;ReadPosRankSum=1.711;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3758,432,0 chrXIII 691745 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.76;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2453,270,0 chrXIII 691748 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.87;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2524,273,0 chrXIII 691787 . A G 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=137;Dels=0.00;FS=11.796;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-2.066;QD=17.31;ReadPosRankSum=2.919;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2405,273,0 chrXIII 691867 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.19;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2364,276,0 chrXIII 691976 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.2459;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.22;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3924,441,0 chrXIII 692015 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.8107;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.21;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3551,384,0 chrXIII 692042 . C A 4253.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0422;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.03;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4253,459,0 chrXIII 692123 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.1173;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=22.23;ReadPosRankSum=1.116;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,162:167:99:3713,408,0 chrXIII 692398 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2733;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.81;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2825,309,0 chrXIII 692624 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=23.93;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3144,357,0 chrXIII 692846 . G A 5196.01 SnpCluster AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=21.30;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5196,556,0 chrXIII 692849 . C T 4797.01 SnpCluster AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=20.41;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4797,534,0 chrXIII 692855 . G T 4613.01 SnpCluster AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.23;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4613,513,0 chrXIII 692858 . A G 4255.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=220;Dels=0.00;FS=4.130;HaplotypeScore=4.1612;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=1.181;QD=19.34;ReadPosRankSum=1.685;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4255,480,0 chrXIII 693184 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.88;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3076,336,0 chrXIII 693249 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7761;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.10;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3021,327,0 chrXIII 693290 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.53;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3577,402,0 chrXIII 693352 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.354;QD=22.00;ReadPosRankSum=1.701;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2497,285,0 chrXIII 693388 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.31;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2597,288,0 chrXIII 693410 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.26;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2838,315,0 chrXIII 693754 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.88;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4060,441,0 chrXIII 694139 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.28;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2929,333,0 chrXIII 694247 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=16.1699;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.84;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3358,372,0 chrXIII 694367 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6072;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.13;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4001,453,0 chrXIII 694403 . C A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.94;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3258,357,0 chrXIII 694404 . T C 3146 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.56;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3179,363,0 chrXIII 694524 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.26;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4372,501,0 chrXIII 694679 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.267;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.613;QD=18.18;ReadPosRankSum=1.672;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3197,369,0 chrXIII 694691 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=17.98;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2981,333,0 chrXIII 694961 . A G 5036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=225;Dels=0.00;FS=8.346;HaplotypeScore=16.9484;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=2.088;QD=22.38;ReadPosRankSum=2.395;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5036,579,0 chrXIII 695123 . A G 5108.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=20.51;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5108,576,0 chrXIII 695300 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.34;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3457,390,0 chrXIII 695427 . A G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=136;Dels=0.00;FS=2.828;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.385;QD=18.53;ReadPosRankSum=2.413;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2553,291,0 chrXIII 695433 . A G 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=142;Dels=0.00;FS=2.849;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.857;QD=17.51;ReadPosRankSum=2.363;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2520,288,0 chrXIII 695679 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.82;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2782,306,0 chrXIII 695736 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.18;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3454,381,0 chrXIII 695793 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=3.185;HaplotypeScore=11.1005;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=1.026;QD=20.32;ReadPosRankSum=1.664;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3121,357,0 chrXIII 695805 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=16.0484;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.20;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3329,366,0 chrXIII 695850 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=198;Dels=0.00;FS=2.557;HaplotypeScore=21.7521;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.503;QD=19.93;ReadPosRankSum=2.894;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:3947,462,0 chrXIII 696177 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.67;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3945,435,0 chrXIII 696333 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=201;Dels=0.00;FS=5.736;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.379;QD=21.01;ReadPosRankSum=2.945;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:3,196:201:99:4222,489,0 chrXIII 696745 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.09;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2969,327,0 chrXIII 697269 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.3783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4604,501,0 chrXIII 697465 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.2752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4634,522,0 chrXIII 697520 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.6645;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.504;QD=23.44;ReadPosRankSum=1.712;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4031,453,0 chrXIII 697993 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.32;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3660,411,0 chrXIII 698041 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.64;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3381,375,0 chrXIII 698130 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=196;Dels=0.00;FS=4.172;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.141;QD=21.69;ReadPosRankSum=-0.707;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4251,464,0 chrXIII 698157 . G A 4276.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.7389;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.71;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4276,474,0 chrXIII 698219 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.62;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2659,300,0 chrXIII 698227 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.287;QD=17.89;ReadPosRankSum=1.707;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2537,288,0 chrXIII 698233 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.78;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2550,288,0 chrXIII 698372 . C A 2871 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.59;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2904,315,0 chrXIII 698559 . T C 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.355;QD=21.23;ReadPosRankSum=1.688;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1689,192,0 chrXIII 698569 . A G 1461 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.58;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1494,168,0 chrXIII 698576 . G T 1369 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.56;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1402,159,0 chrXIII 698667 . A G 1437 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.96;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1470,168,0 chrXIII 698988 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.45;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2503,273,0 chrXIII 699056 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.34;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2507,276,0 chrXIII 699584 . T C 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.443;HaplotypeScore=655.8029;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;MQRankSum=-0.966;QD=17.21;ReadPosRankSum=1.659;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1702,195,0 chrXIII 700248 . G T 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.362;QD=20.80;ReadPosRankSum=1.287;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3911,426,0 chrXIII 700380 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.28;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3076,348,0 chrXIII 700452 . T A 2840 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=19.86;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2873,315,0 chrXIII 700469 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.49;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2696,297,0 chrXIII 700569 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3576,384,0 chrXIII 700620 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.51;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3620,396,0 chrXIII 700942 . C G 2387 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.23;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2420,273,0 chrXIII 700956 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.577;QD=19.92;ReadPosRankSum=1.703;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2384,276,0 chrXIII 701024 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.49;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3588,411,0 chrXIII 701244 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.85;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2160,246,0 chrXIII 701374 . A G 1907 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.92;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1940,219,0 chrXIII 701606 . T A 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=86;Dels=0.00;FS=12.331;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.447;QD=19.66;ReadPosRankSum=2.777;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1724,189,0 chrXIII 701668 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.75;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2695,306,0 chrXIII 702308 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=191;Dels=0.00;FS=7.855;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.412;QD=20.43;ReadPosRankSum=2.423;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:3,185:191:99:3903,441,0 chrXIII 702452 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=153;Dels=0.00;FS=2.901;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.554;QD=22.84;ReadPosRankSum=2.401;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3495,393,0 chrXIII 702482 . C A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.05;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3458,384,0 chrXIII 702605 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.15;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3743,405,0 chrXIII 703253 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.53;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1771,198,0 chrXIII 703399 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;DP=27;Dels=0.00;FS=35.288;HaplotypeScore=18.4144;MLEAC=1;MLEAF=0.500;MQ=52.75;MQ0=0;MQRankSum=2.044;QD=0.49;ReadPosRankSum=-2.947;SB=-5.974e-03 GT:AD:DP:GQ:PL 0/1:19,8:27:43:43,0,318 chrXIII 703401 . T C 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;DP=28;Dels=0.00;FS=8.671;HaplotypeScore=15.2319;MLEAC=1;MLEAF=0.500;MQ=52.09;MQ0=0;MQRankSum=0.364;QD=0.86;ReadPosRankSum=-2.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,6:28:54:54,0,417 chrXIII 703487 . T C 840 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=14.00;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:873,99,0 chrXIII 703489 . A G 839 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=13.98;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:872,99,0 chrXIII 703549 . T C 252 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=5.36;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:33:285,33,0 chrXIII 703588 . C T 307 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=6.53;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:39:340,39,0 chrXIII 703860 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=150;Dels=0.00;FS=8.300;HaplotypeScore=11.9087;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.664;QD=22.01;ReadPosRankSum=2.400;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3302,369,0 chrXIII 703913 . T G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.394;DP=142;Dels=0.00;FS=2.999;HaplotypeScore=7.5492;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.061;QD=22.53;ReadPosRankSum=0.061;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3232,352,0 chrXIII 703969 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.39;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2493,282,0 chrXIII 703990 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.74;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2664,294,0 chrXIII 704425 . A T 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.858;QD=22.52;ReadPosRankSum=1.635;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2443,270,0 chrXIII 704551 . C T 1193 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=16.34;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1226,135,0 chrXIII 704563 . A G 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.488;QD=18.14;ReadPosRankSum=1.683;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1321,153,0 chrXIII 704692 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.18;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1280,144,0 chrXIII 704704 . T C 1174 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=16.77;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1207,138,0 chrXIII 704707 . T C 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-0.503;QD=15.97;ReadPosRankSum=2.320;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1247,141,0 chrXIII 704739 . T G 1602 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.80;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1635,192,0 chrXIII 704858 . T G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.648;QD=23.72;ReadPosRankSum=1.702;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2761,318,0 chrXIII 705104 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.6525;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.99;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2892,318,0 chrXIII 705208 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.62;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2411,282,0 chrXIII 705271 . A G 2368 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.07;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2401,267,0 chrXIII 705286 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=16.83;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2271,255,0 chrXIII 705307 . A G 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=1.049;QD=18.30;ReadPosRankSum=1.659;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2631,294,0 chrXIII 705606 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.00;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2453,264,0 chrXIII 705665 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.45;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2894,315,0 chrXIII 705679 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.112;QD=21.56;ReadPosRankSum=1.676;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2728,300,0 chrXIII 705697 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.69;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2950,327,0 chrXIII 705940 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.79;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2472,267,0 chrXIII 705986 . C G 2271 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.42;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2304,264,0 chrXIII 706063 . A G 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=72;Dels=0.00;FS=3.002;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.400;QD=19.42;ReadPosRankSum=2.381;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1431,162,0 chrXIII 706072 . G A 1464 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.52;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1497,165,0 chrXIII 706102 . T A 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.632;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.501;QD=22.29;ReadPosRankSum=1.694;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2039,222,0 chrXIII 706357 . A G 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=87;Dels=0.00;FS=3.163;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.020;QD=18.82;ReadPosRankSum=1.175;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1670,189,0 chrXIII 706360 . C T 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.217;HaplotypeScore=4.4255;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.564;QD=19.59;ReadPosRankSum=1.531;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1737,189,0 chrXIII 706368 . T G 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.315;QD=18.17;ReadPosRankSum=1.519;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1668,192,0 chrXIII 706399 . T G 1606 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=16.56;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1639,189,0 chrXIII 706717 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.736;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.080;QD=20.06;ReadPosRankSum=1.652;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2661,300,0 chrXIII 706931 . T C 2953 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.65;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2986,339,0 chrXIII 706935 . T C 2863 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.88;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2896,327,0 chrXIII 707030 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.773;QD=22.88;ReadPosRankSum=1.701;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2619,297,0 chrXIII 707109 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.59;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2602,282,0 chrXIII 707180 . A T 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=158;Dels=0.00;FS=8.456;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.770;QD=22.74;ReadPosRankSum=2.341;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3593,393,0 chrXIII 707281 . A G 3200 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.88;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3233,366,0 chrXIII 707429 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4667,507,0 chrXIII 707624 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=161;Dels=0.00;FS=9.872;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.569;QD=21.55;ReadPosRankSum=2.919;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3470,390,0 chrXIII 707917 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.82;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3902,432,0 chrXIII 708061 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=22.03;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3392,369,0 chrXIII 708064 . C A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=21.34;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3308,360,0 chrXIII 708117 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=16.53;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2330,258,0 chrXIII 708130 . T C 2016 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=15.87;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2049,234,0 chrXIII 708165 . A C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;MQRankSum=-0.037;QD=15.24;ReadPosRankSum=-0.212;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2151,249,0 chrXIII 708169 . T C 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=4.3770;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;MQRankSum=-1.479;QD=14.99;ReadPosRankSum=1.707;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2101,237,0 chrXIII 708177 . A G 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.412;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;MQRankSum=-0.648;QD=14.86;ReadPosRankSum=1.709;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2218,252,0 chrXIII 708242 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=16.95;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2525,279,0 chrXIII 708248 . A T 2513 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=17.21;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2546,279,0 chrXIII 708259 . C A 2491 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=17.30;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2524,273,0 chrXIII 708336 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=22.16;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3246,357,0 chrXIII 708449 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=25.66;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3310,360,0 chrXIII 708515 . A G 3063 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.86;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3096,351,0 chrXIII 708659 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1921;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.426;QD=22.37;ReadPosRankSum=1.652;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2941,327,0 chrXIII 708678 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.39;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3220,354,0 chrXIII 708752 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2590,288,0 chrXIII 708816 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.52;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2420,264,0 chrXIII 708850 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.08;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2641,285,0 chrXIII 708880 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.45;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2458,270,0 chrXIII 708913 . G A 2302 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.31;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2335,252,0 chrXIII 709047 . A G 2124 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.60;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2157,246,0 chrXIII 709130 . C G 3520.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.86;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3520,408,0 chrXIII 709221 . A G 4609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=205;Dels=0.00;FS=4.922;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.597;QD=22.48;ReadPosRankSum=1.715;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4609,543,0 chrXIII 709259 . A C 5207.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.45;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5207,588,0 chrXIII 709343 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.52;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3787,411,0 chrXIII 709368 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.98;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3976,435,0 chrXIII 709482 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.08;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3901,426,0 chrXIII 709513 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.82;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3400,369,0 chrXIII 709549 . G C 2722 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.2390;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.60;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2755,318,0 chrXIII 709740 . T C 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=128;Dels=0.00;FS=3.291;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.299;QD=22.73;ReadPosRankSum=1.651;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2942,342,0 chrXIII 709860 . A G 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.682;DP=113;Dels=0.00;FS=11.647;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.373;QD=21.84;ReadPosRankSum=2.937;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:3,108:113:99:2501,282,0 chrXIII 709938 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.99;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2950,321,0 chrXIII 709940 . A C 2837 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.41;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2870,330,0 chrXIII 709983 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.02;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3081,330,0 chrXIII 710060 . T G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.593;QD=23.75;ReadPosRankSum=1.708;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3468,393,0 chrXIII 710099 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9608;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.67;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3536,390,0 chrXIII 710137 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.59;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3893,438,0 chrXIII 710237 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.96;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2954,330,0 chrXIII 710293 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.505;QD=22.80;ReadPosRankSum=0.887;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3831,418,0 chrXIII 710381 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.00;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3245,375,0 chrXIII 710724 . A T 4538.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7283;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.76;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4538,498,0 chrXIII 710827 . A G 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=192;Dels=0.00;FS=12.364;HaplotypeScore=14.6852;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.587;QD=22.52;ReadPosRankSum=3.342;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:4323,492,0 chrXIII 710880 . T A 3163 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.59;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3196,360,0 chrXIII 710897 . A C 2852 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.52;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2885,333,0 chrXIII 710960 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.40;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3836,429,0 chrXIII 711019 . T G 3613.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3613,417,0 chrXIII 711139 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.463;QD=20.77;ReadPosRankSum=1.702;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2463,282,0 chrXIII 711403 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.31;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3090,339,0 chrXIII 711518 . T C 4485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=195;Dels=0.00;FS=2.937;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.019;QD=23.00;ReadPosRankSum=2.374;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4485,507,0 chrXIII 711575 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.13;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3983,444,0 chrXIII 711605 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.4242;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.98;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3050,357,0 chrXIII 711623 . A G 2956 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=18.47;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2989,345,0 chrXIII 711881 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.70;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3233,357,0 chrXIII 711900 . A G 2740 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.92;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2773,315,0 chrXIII 711918 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.201;QD=20.22;ReadPosRankSum=1.704;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2560,294,0 chrXIII 712268 . A G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=103;Dels=0.00;FS=6.970;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.133;QD=18.89;ReadPosRankSum=2.112;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:1979,225,0 chrXIII 712271 . A G 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=112;Dels=0.00;FS=10.924;HaplotypeScore=6.9817;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-0.324;QD=16.61;ReadPosRankSum=2.811;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:1893,219,0 chrXIII 712385 . A C 2216 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.05;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2249,252,0 chrXIII 712387 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=4.030;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-1.490;QD=16.87;ReadPosRankSum=1.678;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2209,258,0 chrXIII 712539 . G C 3426.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.63;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3426,384,0 chrXIII 712621 . A G 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=3.316;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.571;QD=23.76;ReadPosRankSum=1.714;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4539,516,0 chrXIII 712702 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=3.153;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.704;QD=21.82;ReadPosRankSum=1.710;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3382,390,0 chrXIII 712889 . G T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.07;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3514,381,0 chrXIII 713054 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.26;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3268,369,0 chrXIII 713074 . T A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.56;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3429,387,0 chrXIII 713194 . A G 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=125;Dels=0.00;FS=3.335;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.236;QD=21.90;ReadPosRankSum=1.704;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2771,321,0 chrXIII 713537 . A G 2598 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.12;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2631,303,0 chrXIII 713573 . A G 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.548;QD=21.03;ReadPosRankSum=1.706;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2830,324,0 chrXIII 713660 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.81;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2884,315,0 chrXIII 713731 . A C 1436 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.94;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1469,171,0 chrXIII 713803 . T G 1910 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1943,228,0 chrXIII 713912 . T G 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.330;QD=22.35;ReadPosRankSum=1.691;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1910,216,0 chrXIII 713980 . G T 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=9.9223;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.098;QD=22.26;ReadPosRankSum=1.183;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1903,207,0 chrXIII 714135 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.58;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2720,303,0 chrXIII 714255 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.7103;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.14;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3570,384,0 chrXIII 714354 . G T 2166 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.10;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2199,249,0 chrXIII 714399 . T C 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.496;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.279;QD=20.64;ReadPosRankSum=1.667;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2262,258,0 chrXIII 714422 . A G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.497;QD=20.61;ReadPosRankSum=1.673;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2465,279,0 chrXIII 714954 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=197;Dels=0.00;FS=6.831;HaplotypeScore=17.5009;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.365;QD=20.74;ReadPosRankSum=2.412;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4085,477,0 chrXIII 715098 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.52;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3445,390,0 chrXIII 715145 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.566;QD=22.56;ReadPosRankSum=1.708;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3316,375,0 chrXIII 715257 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.532;QD=21.09;ReadPosRankSum=1.712;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3691,420,0 chrXIII 715457 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.06;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3633,393,0 chrXIII 715643 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.906;QD=23.31;ReadPosRankSum=1.705;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3086,351,0 chrXIII 715773 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.3550;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.98;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3356,378,0 chrXIII 715821 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.25;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3464,387,0 chrXIII 715833 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.05;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3233,363,0 chrXIII 716317 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.57;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2696,291,0 chrXIII 716342 . T C 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=10.321;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.716;QD=19.56;ReadPosRankSum=2.371;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1891,216,0 chrXIII 716486 . A G 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.647;QD=23.05;ReadPosRankSum=1.689;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1900,213,0 chrXIII 716541 . G T 1252 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.36;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1285,144,0 chrXIII 717629 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=3.041;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.574;QD=21.38;ReadPosRankSum=2.359;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2941,330,0 chrXIII 718241 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.46;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1943,213,0 chrXIII 718396 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=21.20;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1708,198,0 chrXIII 718423 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=19.83;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1342,147,0 chrXIII 718428 . T C 1240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=66;Dels=0.00;FS=12.455;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;MQRankSum=-0.246;QD=18.79;ReadPosRankSum=2.894;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1273,144,0 chrXIII 718456 . A C 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=-0.905;QD=19.78;ReadPosRankSum=1.681;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1358,156,0 chrXIII 718505 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=18.40;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1523,174,0 chrXIII 718511 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=16.82;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1446,168,0 chrXIII 718532 . T C 1092 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=14.00;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1125,135,0 chrXIII 718535 . T A 1156 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=15.21;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1189,129,0 chrXIII 718675 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=23.62;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2915,318,0 chrXIII 718679 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=20.89;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2686,294,0 chrXIII 718705 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=20.83;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2824,306,0 chrXIII 718763 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-1.438;QD=22.06;ReadPosRankSum=1.715;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4412,492,0 chrXIII 718855 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.751;DP=167;Dels=0.00;FS=12.147;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-2.324;QD=19.62;ReadPosRankSum=3.675;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:5,161:167:99:3276,375,0 chrXIII 718856 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=6.266;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.811;QD=19.72;ReadPosRankSum=2.389;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3248,372,0 chrXIII 718938 . T A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.9207;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.54;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4122,465,0 chrXIII 718973 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.55;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3473,375,0 chrXIII 718986 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.42;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3259,375,0 chrXIII 719061 . A G 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=2.839;HaplotypeScore=7.4460;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.789;QD=20.31;ReadPosRankSum=2.416;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3059,345,0 chrXIII 719100 . T C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=146;Dels=0.00;FS=10.837;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.043;QD=19.18;ReadPosRankSum=2.382;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,143:146:99:2834,324,0 chrXIII 719298 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=120;Dels=0.00;FS=17.019;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.724;QD=22.01;ReadPosRankSum=3.341;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2674,306,0 chrXIII 719499 . A T 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=3.906;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.558;QD=22.53;ReadPosRankSum=1.713;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3988,450,0 chrXIII 719516 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.07;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3840,420,0 chrXIII 719811 . A G 5206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=225;Dels=0.00;FS=2.913;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.420;QD=23.14;ReadPosRankSum=2.417;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5206,591,0 chrXIII 720435 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6338;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.79;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3402,378,0 chrXIII 720533 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.8742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.009;QD=21.66;ReadPosRankSum=1.707;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3044,345,0 chrXIII 721068 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.320;QD=23.34;ReadPosRankSum=1.713;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4318,486,0 chrXIII 721408 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7981;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.814;QD=19.35;ReadPosRankSum=1.640;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,150:156:99:3051,345,0 chrXIII 721409 . A C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=156;Dels=0.00;FS=6.086;HaplotypeScore=6.5867;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.889;QD=18.58;ReadPosRankSum=2.955;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,151:156:99:2932,342,0 chrXIII 721557 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=146;Dels=0.00;FS=6.294;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-1.035;QD=20.42;ReadPosRankSum=2.399;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3015,348,0 chrXIII 721563 . A G 2992 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.22;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3025,342,0 chrXIII 721591 . G T 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.248;HaplotypeScore=6.0460;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.570;QD=19.42;ReadPosRankSum=1.501;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2965,318,0 chrXIII 721694 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.47;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3527,387,0 chrXIII 721872 . C G 4034.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.23;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4034,474,0 chrXIII 722402 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=132;Dels=0.00;FS=6.535;HaplotypeScore=8.1412;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.610;QD=21.97;ReadPosRankSum=2.412;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2933,333,0 chrXIII 722430 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=21.75;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2773,297,0 chrXIII 722436 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=20.52;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2803,297,0 chrXIII 722441 . G T 2653 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=19.65;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2686,300,0 chrXIII 722849 . C T 4710.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=17.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.19;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:4710,525,0 chrXIII 722985 . C T 5506.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.26;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5506,615,0 chrXIII 723405 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.478;QD=21.97;ReadPosRankSum=1.686;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3317,375,0 chrXIII 723430 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.41;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3272,360,0 chrXIII 723720 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.15;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2773,309,0 chrXIII 723721 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.74;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2895,312,0 chrXIII 723828 . A G 2580 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.50;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2613,303,0 chrXIII 723924 . T A 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.453;QD=22.83;ReadPosRankSum=1.673;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4018,453,0 chrXIII 723996 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.8831;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.593;QD=21.86;ReadPosRankSum=1.709;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3322,378,0 chrXIII 724206 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.44;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3013,330,0 chrXIII 724299 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.28;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2736,312,0 chrXIII 724434 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=143;Dels=0.00;FS=6.240;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.096;QD=19.22;ReadPosRankSum=2.380;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2782,315,0 chrXIII 724439 . G T 2821 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.73;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2854,309,0 chrXIII 724793 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.41;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1691,198,0 chrXIII 724837 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1504,162,0 chrXIII 725163 . C A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4363,477,0 chrXIII 725856 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.54;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1594,186,0 chrXIII 725857 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.37;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1581,186,0 chrXIII 726417 . T C 2341 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2374,270,0 chrXIII 726963 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.76;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2296,252,0 chrXIII 727057 . A G 3169 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.02;FS=0.000;HaplotypeScore=11.2091;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.04;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3202,369,0 chrXIII 727058 . C T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.02;FS=0.000;HaplotypeScore=11.2091;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.84;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3318,372,0 chrXIII 727303 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.85;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3981,429,0 chrXIII 727646 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5110;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.17;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3505,378,0 chrXIII 727763 . A G 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=193;Dels=0.00;FS=13.410;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.678;QD=24.16;ReadPosRankSum=3.415;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:4663,528,0 chrXIII 728040 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6623;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.77;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2947,324,0 chrXIII 728157 . A C 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=109;Dels=0.00;FS=3.900;HaplotypeScore=10.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.283;QD=21.11;ReadPosRankSum=1.636;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2334,270,0 chrXIII 729020 . G C 2270 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.8627;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.61;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2303,264,0 chrXIII 729249 . G T 2796 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2829,309,0 chrXIII 729284 . T C 2933 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.22;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2966,342,0 chrXIII 729647 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.65;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2428,273,0 chrXIII 729654 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.28;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2565,285,0 chrXIII 729711 . T C 1949 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.52;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1982,231,0 chrXIII 729828 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.90;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3033,327,0 chrXIII 729862 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.28;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2873,309,0 chrXIII 729976 . A G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.797;QD=23.28;ReadPosRankSum=1.705;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2990,339,0 chrXIII 730062 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2491,276,0 chrXIII 730384 . A G 2246 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9386;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.60;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2279,261,0 chrXIII 730533 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.306;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.296;QD=22.74;ReadPosRankSum=1.709;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3456,399,0 chrXIII 730692 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.010;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.277;QD=22.45;ReadPosRankSum=1.709;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3390,387,0 chrXIII 730842 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.20;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3441,378,0 chrXIII 731576 . A G 2068 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2101,240,0 chrXIII 732241 . C G 2317 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.65;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2350,273,0 chrXIII 732373 . A G 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.159;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.603;QD=22.71;ReadPosRankSum=1.693;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2054,234,0 chrXIII 732395 . T C 2299 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.99;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2332,258,0 chrXIII 732586 . T C 3090 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.95;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3123,357,0 chrXIII 732688 . A G 2906 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.88;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2939,336,0 chrXIII 732863 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3958,441,0 chrXIII 733208 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2194,243,0 chrXIII 733624 . T C 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=85;Dels=0.00;FS=7.782;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.565;QD=19.73;ReadPosRankSum=2.363;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1710,195,0 chrXIII 734324 . A C 2178 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2211,246,0 chrXIII 734392 . T C 2547 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2580,294,0 chrXIII 734558 . A G 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.150;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.330;QD=23.45;ReadPosRankSum=1.622;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2988,339,0 chrXIII 734679 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.12;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4077,441,0 chrXIII 734873 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3315,375,0 chrXIII 735107 . T C 2000 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2033,231,0 chrXIII 735170 . G A 1923 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1956,219,0 chrXIII 735372 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.81;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2588,282,0 chrXIII 735827 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=182;Dels=0.00;FS=6.293;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.350;QD=21.73;ReadPosRankSum=2.340;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3955,456,0 chrXIII 735876 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.419;HaplotypeScore=6.6776;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.359;QD=21.29;ReadPosRankSum=1.628;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3598,420,0 chrXIII 736201 . C T 3438.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3438,387,0 chrXIII 736911 . A G 102.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;DP=88;Dels=0.00;FS=2.724;HaplotypeScore=69.8639;MLEAC=1;MLEAF=0.500;MQ=55.94;MQ0=0;MQRankSum=0.097;QD=1.16;ReadPosRankSum=-4.660;SB=-3.377e-01 GT:AD:DP:GQ:PL 0/1:74,14:88:8:132,0,8 chrXIII 736949 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.63;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1931,216,0 chrXIII 737093 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.80;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2513,276,0 chrXIII 737201 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.88;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2163,246,0 chrXIII 737273 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.28;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2338,258,0 chrXIII 737381 . T G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=2.744;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.585;QD=19.56;ReadPosRankSum=2.411;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2537,288,0 chrXIII 737389 . T C 2383 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.33;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2416,270,0 chrXIII 737462 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.68;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3434,378,0 chrXIII 737485 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.19;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3678,399,0 chrXIII 737552 . A G 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.446;QD=23.09;ReadPosRankSum=1.675;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2873,327,0 chrXIII 737651 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.557;DP=145;Dels=0.00;FS=2.589;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.134;QD=19.78;ReadPosRankSum=2.838;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:2901,312,0 chrXIII 737883 . T C 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=94;Dels=0.00;FS=3.057;HaplotypeScore=10.4434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.466;QD=21.04;ReadPosRankSum=1.658;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2011,231,0 chrXIII 737933 . C G 2029 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.49;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2062,237,0 chrXIII 738269 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.2079;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.24;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2124,231,0 chrXIII 738331 . G C 2654 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.91;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2687,303,0 chrXIII 739012 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.501;QD=21.99;ReadPosRankSum=1.640;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1682,192,0 chrXIII 739150 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.21;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1743,195,0 chrXIII 740076 . A G 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.561;QD=22.10;ReadPosRankSum=1.647;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1823,207,0 chrXIII 740188 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.87;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2389,258,0 chrXIII 740191 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.38;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2316,249,0 chrXIII 740218 . G T 1989 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.69;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2022,216,0 chrXIII 740301 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3334,360,0 chrXIII 740517 . G C 3050 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.68;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3083,351,0 chrXIII 740583 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=146;Dels=0.00;FS=6.418;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.042;QD=21.17;ReadPosRankSum=2.365;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3124,369,0 chrXIII 740818 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=150;Dels=0.00;FS=6.731;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.242;QD=22.61;ReadPosRankSum=2.399;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:3392,399,0 chrXIII 741174 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.53;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1362,156,0 chrXIII 741316 . T G 1512 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4503;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.30;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1545,177,0 chrXIII 741642 . C G 3189 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.6837;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=18.43;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,168:173:99:3222,366,0 chrXIII 741868 . G C 2839 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.31;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2872,336,0 chrXIII 741880 . C T 2846 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.18;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2879,324,0 chrXIII 741959 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.73;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3298,363,0 chrXIII 742214 . A G 2917 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.6386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2950,333,0 chrXIII 742337 . T G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.367;QD=22.83;ReadPosRankSum=1.664;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3516,390,0 chrXIII 742757 . G C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.10;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3845,444,0 chrXIII 742863 . A G 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.495;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.635;QD=23.68;ReadPosRankSum=1.697;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4713,534,0 chrXIII 742901 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.8866;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.524;QD=21.87;ReadPosRankSum=1.697;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4396,504,0 chrXIII 742946 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.4502;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.48;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3780,429,0 chrXIII 743174 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.588;DP=242;Dels=0.00;FS=11.359;HaplotypeScore=7.2201;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.859;QD=17.40;ReadPosRankSum=3.718;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:5,236:242:99:4210,486,0 chrXIII 743180 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.3295;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.04;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4493,492,0 chrXIII 743279 . C T 6054.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.41;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6054,660,0 chrXIII 743500 . C A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.82;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4518,510,0 chrXIII 743596 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.9781;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.34;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4267,468,0 chrXIII 743629 . C G 3096 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.06;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,142:147:99:3129,354,0 chrXIII 743691 . G C 3476.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.81;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3476,390,0 chrXIII 743901 . A C 3913.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.7322;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.62;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3913,447,0 chrXIII 743928 . C T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.5350;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.71;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4625,504,0 chrXIII 744231 . C T 3928.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3928,441,0 chrXIII 744270 . C T 4653.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.4910;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.62;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4653,516,0 chrXIII 744435 . T A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.21;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3776,435,0 chrXIII 744471 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=4.826;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.871;QD=20.96;ReadPosRankSum=1.711;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3396,387,0 chrXIII 744735 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.14;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2832,318,0 chrXIII 744774 . T C 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=137;Dels=0.00;FS=3.040;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.709;QD=17.63;ReadPosRankSum=2.342;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2448,282,0 chrXIII 744855 . T C 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.133;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.4758;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.211;QD=22.44;ReadPosRankSum=-0.534;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3018,326,0 chrXIII 744882 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.49;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3046,330,0 chrXIII 744933 . T C 2848 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=18.74;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2881,327,0 chrXIII 744937 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=19.64;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2900,315,0 chrXIII 744949 . T C 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=3.030;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;MQRankSum=-1.149;QD=18.27;ReadPosRankSum=2.417;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2828,315,0 chrXIII 744975 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=18.57;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2874,315,0 chrXIII 744999 . A G 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=6.294;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=-1.120;QD=15.28;ReadPosRankSum=2.349;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2279,258,0 chrXIII 745005 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=16.56;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2451,267,0 chrXIII 745236 . G T 3190 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.79;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3223,351,0 chrXIII 745377 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.43;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2774,300,0 chrXIII 745968 . A G 2207 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=20.25;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2240,255,0 chrXIII 745976 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=19.62;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2054,228,0 chrXIII 745979 . G T 1918 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.7508;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=18.80;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1951,213,0 chrXIII 746043 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.14;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1906,210,0 chrXIII 746079 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.98;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2400,264,0 chrXIII 746108 . A G 2279 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.50;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2312,273,0 chrXIII 746227 . T A 2890 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.91;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2923,324,0 chrXIII 746305 . T A 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.601;QD=24.65;ReadPosRankSum=1.710;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3894,423,0 chrXIII 746448 . T C 5016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=230;Dels=0.00;FS=5.594;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.110;QD=21.81;ReadPosRankSum=2.926;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:3,226:230:99:5016,570,0 chrXIII 746667 . T C 5399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.174;DP=250;Dels=0.00;FS=2.155;HaplotypeScore=18.9824;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.474;QD=21.60;ReadPosRankSum=2.745;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:3,245:250:99:5399,599,0 chrXIII 747051 . T C 2936 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.58;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2969,345,0 chrXIII 747252 . C T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.08;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3937,435,0 chrXIII 747330 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=165;Dels=0.00;FS=2.585;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.006;QD=22.79;ReadPosRankSum=2.909;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3761,429,0 chrXIII 747492 . G A 4788.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.2832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4788,522,0 chrXIII 747860 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=23.90;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1634,177,0 chrXIII 747983 . T C 713 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=19.27;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:81:746,81,0 chrXIII 747998 . G C 597 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=17.56;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:630,72,0 chrXIII 748010 . G A 621 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.30;MQ0=0;QD=16.78;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:72:654,72,0 chrXIII 748265 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.24;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1857,201,0 chrXIII 748748 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.443;QD=22.69;ReadPosRankSum=1.355;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3539,374,0 chrXIII 749114 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.20;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2726,297,0 chrXIII 749359 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.408;QD=23.02;ReadPosRankSum=1.704;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2865,327,0 chrXIII 749667 . T C 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;DP=89;Dels=0.00;FS=3.261;HaplotypeScore=9.3270;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.693;QD=21.89;ReadPosRankSum=1.032;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1981,222,0 chrXIII 749859 . A G 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.078;DP=107;Dels=0.00;FS=3.050;HaplotypeScore=12.3199;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.174;QD=21.16;ReadPosRankSum=1.591;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2297,267,0 chrXIII 750161 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=155;Dels=0.00;FS=2.997;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-1.084;QD=18.01;ReadPosRankSum=2.417;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:2824,321,0 chrXIII 750162 . C G 2780 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.17;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:2813,318,0 chrXIII 750242 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.78;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2942,330,0 chrXIII 750320 . A C 2273 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7202;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.66;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2306,264,0 chrXIII 750743 . G A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.7315;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.04;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4208,480,0 chrXIII 750755 . T A 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=213;Dels=0.00;FS=2.871;HaplotypeScore=4.3309;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.375;QD=19.41;ReadPosRankSum=2.403;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4134,468,0 chrXIII 750779 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=220;Dels=0.00;FS=2.914;HaplotypeScore=4.3120;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.485;QD=16.72;ReadPosRankSum=2.327;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:3679,429,0 chrXIII 750782 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.1477;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=17.67;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3887,423,0 chrXIII 750981 . T C 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=227;Dels=0.00;FS=3.522;HaplotypeScore=15.4350;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.978;QD=21.00;ReadPosRankSum=1.701;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:4766,543,0 chrXIII 751315 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.56;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3326,378,0 chrXIII 751321 . A T 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.760;QD=20.52;ReadPosRankSum=1.711;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3365,366,0 chrXIII 751426 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.02;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3743,405,0 chrXIII 751427 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.42;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3684,411,0 chrXIII 751455 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.10;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3967,447,0 chrXIII 751758 . A G 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=1.501;QD=22.99;ReadPosRankSum=1.694;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2102,237,0 chrXIII 751801 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.23;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2117,243,0 chrXIII 751891 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.17;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2298,249,0 chrXIII 752227 . T G 3917.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.64;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3917,459,0 chrXIII 752461 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.573;DP=168;Dels=0.00;FS=11.858;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.624;QD=21.76;ReadPosRankSum=3.770;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:5,162:168:99:3655,417,0 chrXIII 752515 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.78;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3680,399,0 chrXIII 752521 . T G 3433.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.06;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3433,384,0 chrXIII 752737 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.49;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2289,252,0 chrXIII 752985 . C A 391 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=18.62;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:48:424,48,0 chrXIII 752993 . G A 432 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=18.00;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:465,54,0 chrXIII 753037 . T C 305 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=16.05;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:338,39,0 chrXIII 753060 . A T 245 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.50;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:33:278,33,0 chrXIII 753079 . T C 401 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.11;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:48:434,48,0 chrXIII 753954 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.2357;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.57;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3837,432,0 chrXIII 754050 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3868,426,0 chrXIII 754594 . T C 2609 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.71;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,121:126:99:2642,303,0 chrXIII 754630 . T C 2152 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.96;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2185,249,0 chrXIII 754796 . A T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.29;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3352,369,0 chrXIII 754917 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4187;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.31;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3048,321,0 chrXIII 754927 . G T 2837 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.82;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2870,315,0 chrXIII 755045 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7450;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.39;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4147,468,0 chrXIII 755483 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.9780;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.35;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4402,474,0 chrXIII 755501 . C T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.5263;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.36;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4134,459,0 chrXIII 755942 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.471;QD=22.77;ReadPosRankSum=1.708;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3324,378,0 chrXIII 756198 . A T 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=167;Dels=0.00;FS=2.856;HaplotypeScore=7.4702;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.858;QD=22.29;ReadPosRankSum=2.405;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3722,399,0 chrXIII 756230 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.8112;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=19.48;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2857,318,0 chrXIII 756506 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.204;QD=18.47;ReadPosRankSum=1.656;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:2600,291,0 chrXIII 756540 . A G 169.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.649;DP=136;Dels=0.00;FS=5.904;HaplotypeScore=220.0082;MLEAC=1;MLEAF=0.500;MQ=40.47;MQ0=0;MQRankSum=1.515;QD=1.24;ReadPosRankSum=-5.876;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:122,14:136:32:199,0,32 chrXIII 756542 . T G 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;DP=130;Dels=0.00;FS=8.778;HaplotypeScore=110.0041;MLEAC=1;MLEAF=0.500;MQ=39.60;MQ0=0;MQRankSum=-0.854;QD=0.38;ReadPosRankSum=4.721;SB=-1.059e+03 GT:AD:DP:GQ:PL 0/1:8,121:130:64:79,0,64 chrXIII 756564 . C G 1400 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=12.17;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1433,165,0 chrXIII 756565 . A C 1309 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=11.48;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1342,156,0 chrXIII 756577 . T C 1252 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=0;QD=11.70;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1285,147,0 chrXIII 756608 . A T 251 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=76.2318;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=2.54;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:33:284,33,0 chrXIII 756630 . T A 1579 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=16.28;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1612,177,0 chrXIII 756660 . A T 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.252;QD=20.35;ReadPosRankSum=1.669;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2272,252,0 chrXIII 756710 . A G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;MQRankSum=-0.049;QD=19.64;ReadPosRankSum=1.667;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2154,249,0 chrXIII 756713 . G T 2280 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=20.92;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2313,252,0 chrXIII 756979 . A T 209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.091;DP=30;Dels=0.00;FS=9.265;HaplotypeScore=12.4158;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;MQRankSum=1.901;QD=6.97;ReadPosRankSum=-0.272;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:9,21:30:27:242,27,0 chrXIII 756991 . A T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.349;DP=34;Dels=0.03;FS=9.423;HaplotypeScore=25.3329;MLEAC=1;MLEAF=0.500;MQ=42.09;MQ0=0;MQRankSum=-0.764;QD=0.59;ReadPosRankSum=-3.976;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:23,10:33:50:50,0,173 chrXIII 757086 . A T 2123 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.85;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2156,237,0 chrXIII 757200 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.070;QD=25.00;ReadPosRankSum=1.707;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3400,375,0 chrXIII 757226 . G T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.62;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3777,417,0 chrXIII 757281 . T C 5301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=249;Dels=0.00;FS=2.463;HaplotypeScore=17.1284;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.624;QD=21.29;ReadPosRankSum=2.939;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:3,245:249:99:5301,591,0 chrXIII 757318 . G A 6113.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.5556;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.69;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6113,681,0 chrXIII 757443 . G A 7796.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.75;SB=-3.699e+03 GT:AD:DP:GQ:PL 1/1:0,313:315:99:7796,847,0 chrXIII 757555 . T C 7521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=344;Dels=0.00;FS=3.608;HaplotypeScore=25.3391;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.041;QD=21.86;ReadPosRankSum=1.722;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:1,341:344:99:7521,864,0 chrXIII 757815 . G C 6526.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.39;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,317:320:99:6526,741,0 chrXIII 757882 . T C 7329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=354;Dels=0.00;FS=3.967;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.097;QD=20.70;ReadPosRankSum=1.702;SB=-3.578e+03 GT:AD:DP:GQ:PL 1/1:1,348:354:99:7329,854,0 chrXIII 757897 . G A 7118.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.25;SB=-3.687e+03 GT:AD:DP:GQ:PL 1/1:0,334:335:99:7118,777,0 chrXIII 757906 . C T 7236.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.26;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:0,325:325:99:7236,795,0 chrXIII 757948 . T C 6151.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=19.3860;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.17;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:6151,702,0 chrXIII 758017 . A T 6201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=294;Dels=0.00;FS=2.998;HaplotypeScore=28.5345;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.565;QD=21.09;ReadPosRankSum=2.391;SB=-3.396e+03 GT:AD:DP:GQ:PL 1/1:2,292:294:99:6201,675,0 chrXIII 758053 . A G 6279.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=20.5637;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=21.65;SB=-3.516e+03 GT:AD:DP:GQ:PL 1/1:0,288:290:99:6279,717,0 chrXIII 758164 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=19.01;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2979,333,0 chrXIII 758168 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;MQRankSum=-1.390;QD=18.26;ReadPosRankSum=1.709;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2808,321,0 chrXIII 758197 . T G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=6.622;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=-0.734;QD=15.74;ReadPosRankSum=1.671;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2708,312,0 chrXIII 758200 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=173;Dels=0.00;FS=6.583;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;MQRankSum=-0.410;QD=14.55;ReadPosRankSum=1.712;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2550,306,0 chrXIII 758254 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=16.87;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2682,294,0 chrXIII 758256 . T C 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=7.132;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;MQRankSum=-1.084;QD=16.55;ReadPosRankSum=1.710;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2598,291,0 chrXIII 758281 . C G 2265 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=14.90;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2298,261,0 chrXIII 758293 . A C 1811 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=0;MQRankSum=-3.102;QD=13.62;ReadPosRankSum=3.340;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:4,129:133:99:1844,222,0 chrXIII 758299 . C T 1821 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;QD=14.80;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1854,207,0 chrXIII 758302 . C T 1643 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;QD=14.16;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1676,195,0 chrXIII 758318 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=14.50;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1556,177,0 chrXIII 758437 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.57;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2508,273,0 chrXIII 758475 . G A 2149 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.08;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2182,249,0 chrXIII 758494 . T C 2187 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.88;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2220,258,0 chrXIII 758527 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.72;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2618,288,0 chrXIII 758567 . T C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=135;Dels=0.00;FS=2.404;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.113;QD=20.01;ReadPosRankSum=2.903;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:3,131:135:99:2734,312,0 chrXIII 758570 . G C 2730 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.93;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2763,309,0 chrXIII 759082 . A G 95.30 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.226;DP=236;Dels=0.00;FS=10.900;HaplotypeScore=444.5647;MLEAC=1;MLEAF=0.500;MQ=54.59;MQ0=0;MQRankSum=3.415;QD=0.40;ReadPosRankSum=-5.812;SB=-1.303e+00 GT:AD:DP:GQ:PL 1/1:215,15:235:15:128,15,0 chrXIII 759262 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9227;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.96;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3123,345,0 chrXIII 759350 . A G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.977;QD=18.65;ReadPosRankSum=1.706;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2551,294,0 chrXIII 759582 . G A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.69;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3676,402,0 chrXIII 759891 . C A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=20.3648;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.35;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3704,414,0 chrXIII 759962 . G A 6160.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.9402;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.42;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6160,672,0 chrXIII 760319 . A G 5154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=4.4581;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.214;QD=19.75;ReadPosRankSum=1.652;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:5154,597,0 chrXIII 760322 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=260;Dels=0.00;FS=2.650;HaplotypeScore=3.4648;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.562;QD=19.41;ReadPosRankSum=2.431;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:5047,582,0 chrXIII 760473 . G A 6985.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=19.7170;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.68;SB=-3.778e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6985,760,0 chrXIII 760509 . A G 5332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=241;Dels=0.00;FS=15.188;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.180;QD=22.12;ReadPosRankSum=3.315;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:4,236:241:99:5332,626,0 chrXIII 760703 . C G 6222.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=16.5707;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.96;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6222,702,0 chrXIII 760780 . A C 5218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=258;Dels=0.00;FS=5.999;HaplotypeScore=18.2432;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.044;QD=20.22;ReadPosRankSum=2.949;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:3,250:258:99:5218,603,0 chrXIII 760816 . A C 6191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=19.0853;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.533;QD=21.65;ReadPosRankSum=1.684;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:1,285:286:99:6191,699,0 chrXIII 760898 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.2739;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.78;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4192,468,0 chrXIII 761015 . T C 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=208;Dels=0.00;FS=10.454;HaplotypeScore=19.7307;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.365;QD=20.98;ReadPosRankSum=2.946;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:3,201:208:99:4363,501,0 chrXIII 761244 . A T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.18;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3638,399,0 chrXIII 761300 . T C 2531 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4328;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.89;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2564,291,0 chrXIII 761318 . T A 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-1.568;QD=17.91;ReadPosRankSum=1.650;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2307,264,0 chrXIII 761436 . G A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.90;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4144,447,0 chrXIII 761463 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.981;QD=20.69;ReadPosRankSum=1.690;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3435,387,0 chrXIII 761480 . T C 3098 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.48;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3131,363,0 chrXIII 761546 . C T 4286.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.5225;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=23.55;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4286,471,0 chrXIII 761608 . A C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.6473;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.55;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3991,444,0 chrXIII 761798 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=150;Dels=0.00;FS=4.023;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.337;QD=19.29;ReadPosRankSum=1.709;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2926,345,0 chrXIII 761801 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.24;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3006,324,0 chrXIII 761973 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.65;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2328,255,0 chrXIII 762006 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.56;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2027,225,0 chrXIII 762262 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.423;QD=22.79;ReadPosRankSum=1.719;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3396,387,0 chrXIII 762346 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.09;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3480,381,0 chrXIII 762356 . T C 3025 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.77;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3058,351,0 chrXIII 762442 . C A 2729 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.19;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2762,309,0 chrXIII 762467 . G C 2750 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.00;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2783,312,0 chrXIII 762774 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=17.74;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2516,273,0 chrXIII 762779 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=16.80;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2436,267,0 chrXIII 762794 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=14.96;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2202,240,0 chrXIII 762801 . A G 2034 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=13.84;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2067,240,0 chrXIII 762822 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=14.52;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2095,225,0 chrXIII 762840 . A C 1776 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=13.45;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1809,204,0 chrXIII 762915 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.41;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2870,339,0 chrXIII 763142 . A T 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.641;QD=21.99;ReadPosRankSum=1.641;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1704,186,0 chrXIII 763289 . A G 2073 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=23.56;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2106,237,0 chrXIII 763672 . A C 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.894;QD=21.60;ReadPosRankSum=1.861;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2690,309,0 chrXIII 763864 . G C 2068 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.98;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2101,243,0 chrXIII 763944 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1590,174,0 chrXIII 764392 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.53;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2241,240,0 chrXIII 764401 . A G 1978 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.98;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2011,234,0 chrXIII 764686 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.72;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3558,393,0 chrXIII 765021 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.2096;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.90;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3615,390,0 chrXIII 765038 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.3389;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.379;QD=19.48;ReadPosRankSum=-0.031;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3331,341,0 chrXIII 765055 . T G 3039 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.47;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3072,357,0 chrXIII 765109 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.14;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2572,279,0 chrXIII 765121 . T C 2237 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.75;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2270,258,0 chrXIII 765291 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.71;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2940,321,0 chrXIII 765316 . A G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=6.806;HaplotypeScore=9.1093;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=1.421;QD=21.67;ReadPosRankSum=2.409;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2677,306,0 chrXIII 765348 . T C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.281;QD=21.73;ReadPosRankSum=1.704;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2706,312,0 chrXIII 765373 . A G 2642 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.43;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2675,312,0 chrXIII 765393 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.87;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2715,297,0 chrXIII 765542 . T C 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=147;Dels=0.00;FS=7.399;HaplotypeScore=9.2347;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.309;QD=22.57;ReadPosRankSum=2.399;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3318,378,0 chrXIII 765648 . G T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.4452;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.77;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3347,369,0 chrXIII 765682 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9256;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.43;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3726,423,0 chrXIII 765739 . A G 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=6.543;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-2.297;QD=19.28;ReadPosRankSum=2.412;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2520,288,0 chrXIII 765766 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=16.60;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1776,195,0 chrXIII 765773 . C T 1762 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;QD=17.27;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1795,195,0 chrXIII 765790 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=13.88;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1324,147,0 chrXIII 765796 . T C 1064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;MQRankSum=-1.501;QD=11.82;ReadPosRankSum=1.694;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1097,129,0 chrXIII 765853 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.03;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2240,255,0 chrXIII 766029 . A G 1565 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=21.15;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1598,180,0 chrXIII 766042 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.55;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1412,153,0 chrXIII 766069 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.37;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1234,147,0 chrXIII 766107 . C T 793 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=17.62;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:90:826,90,0 chrXIII 766215 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.696;QD=24.80;ReadPosRankSum=1.696;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2463,276,0 chrXIII 766310 . G C 1909 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.46;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1942,222,0 chrXIII 766413 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.863;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.383;QD=21.38;ReadPosRankSum=1.625;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2791,315,0 chrXIII 766444 . T G 2645 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.86;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2678,312,0 chrXIII 766566 . T C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=93;Dels=0.00;FS=3.557;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.950;QD=22.01;ReadPosRankSum=1.695;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2080,240,0 chrXIII 766609 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.29;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2141,249,0 chrXIII 766746 . A T 2267 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.90;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2300,258,0 chrXIII 766771 . T C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.149;QD=22.07;ReadPosRankSum=1.659;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2174,249,0 chrXIII 766803 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.11;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2133,234,0 chrXIII 766878 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.18;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2695,294,0 chrXIII 766972 . A T 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.787;QD=22.85;ReadPosRankSum=1.592;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2295,249,0 chrXIII 767001 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.27;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2220,246,0 chrXIII 767080 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2613,294,0 chrXIII 767539 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.4637;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.74;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3484,378,0 chrXIII 767542 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=166;Dels=0.00;FS=5.736;HaplotypeScore=2.8863;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.279;QD=19.98;ReadPosRankSum=2.958;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3317,375,0 chrXIII 768019 . A G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=113;Dels=0.00;FS=3.049;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.882;QD=22.11;ReadPosRankSum=2.406;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2531,291,0 chrXIII 768108 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=122;Dels=0.00;FS=3.346;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.474;QD=21.02;ReadPosRankSum=1.703;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2597,294,0 chrXIII 768217 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-1.060;QD=0.12;ReadPosRankSum=1.520;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,97:101:6:43,6,0 chrXIII 768258 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=23.70;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2664,285,0 chrXIII 768268 . A T 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=-1.204;QD=22.09;ReadPosRankSum=1.699;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2375,261,0 chrXIII 768296 . T A 1832 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=21.06;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1865,204,0 chrXIII 768344 . A G 932 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.71;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:965,111,0 chrXIII 768904 . C T 161.03 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=3.74;SB=-2.804e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:24:194,24,0 chrXIII 768939 . C T 993 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=16.83;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1026,114,0 chrXIII 768951 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;QD=17.41;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1182,129,0 chrXIII 768968 . T G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=2.856;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=0.464;QD=18.06;ReadPosRankSum=2.386;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1424,165,0 chrXIII 769131 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=21.14;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2337,267,0 chrXIII 769141 . A G 2280 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=20.00;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2313,264,0 chrXIII 769148 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=19.34;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2393,270,0 chrXIII 769211 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=22.09;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3579,399,0 chrXIII 769249 . G T 3066 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=417.5315;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.41;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3099,342,0 chrXIII 769315 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=16.41;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2494,279,0 chrXIII 769319 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=16.34;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2369,267,0 chrXIII 769428 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=21.73;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3889,417,0 chrXIII 769442 . T G 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=181;Dels=0.00;FS=5.478;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=0.017;QD=20.27;ReadPosRankSum=2.635;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:3,176:181:99:3668,417,0 chrXIII 769582 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.3958;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=22.99;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4207,462,0 chrXIII 769616 . A G 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=159;Dels=0.00;FS=8.808;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=-1.600;QD=20.65;ReadPosRankSum=2.388;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3283,378,0 chrXIII 769643 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=19.89;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2997,330,0 chrXIII 769653 . A T 2877 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=18.68;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2910,324,0 chrXIII 769700 . T C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=174;Dels=0.00;FS=3.409;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-0.132;QD=17.32;ReadPosRankSum=1.712;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3047,360,0 chrXIII 769741 . C A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=21.29;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4087,459,0 chrXIII 769778 . T A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=18.48;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3788,432,0 chrXIII 769779 . T A 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=208;Dels=0.00;FS=6.297;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;MQRankSum=-1.541;QD=18.86;ReadPosRankSum=2.414;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:3923,435,0 chrXIII 769791 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=18.51;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3942,438,0 chrXIII 769821 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=196;Dels=0.00;FS=6.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;MQRankSum=-2.224;QD=15.39;ReadPosRankSum=2.399;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3050,354,0 chrXIII 769836 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;QD=16.96;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3188,354,0 chrXIII 769839 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=16.58;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2968,330,0 chrXIII 769952 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.13;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3265,384,0 chrXIII 769965 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=4.120;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=-1.652;QD=19.55;ReadPosRankSum=1.712;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3401,396,0 chrXIII 769971 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.398;DP=182;Dels=0.00;FS=2.807;HaplotypeScore=6.7153;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=-0.506;QD=17.69;ReadPosRankSum=0.533;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3253,365,0 chrXIII 770040 . G T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=20.97;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3272,360,0 chrXIII 770076 . A G 2789 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=21.29;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2822,330,0 chrXIII 770091 . A T 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.943;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=1.179;QD=21.53;ReadPosRankSum=1.645;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2617,288,0 chrXIII 770092 . A G 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=117;Dels=0.00;FS=11.772;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=1.871;QD=20.68;ReadPosRankSum=2.923;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2453,285,0 chrXIII 770272 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=23.54;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3234,351,0 chrXIII 770320 . T C 1680 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=17.87;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1713,198,0 chrXIII 770331 . A G 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;MQRankSum=1.148;QD=16.99;ReadPosRankSum=1.690;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1443,168,0 chrXIII 770342 . T C 1355 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=6.935;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;MQRankSum=-1.294;QD=17.15;ReadPosRankSum=1.688;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1388,159,0 chrXIII 770343 . C T 1340 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=16.75;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1373,159,0 chrXIII 770345 . T G 1322 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=7.044;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;MQRankSum=-1.219;QD=16.32;ReadPosRankSum=1.689;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1355,156,0 chrXIII 770390 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=19.02;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1688,180,0 chrXIII 770418 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=19.59;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2208,237,0 chrXIII 770511 . C T 378 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=7.87;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:45:411,45,0 chrXIII 770521 . T C 404 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=8.42;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:51:437,51,0 chrXIII 770533 . G A 538 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=9.96;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:63:571,63,0 chrXIII 770543 . G A 588 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=9.48;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:69:621,69,0 chrXIII 770582 . A G 1795 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=15.34;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1828,213,0 chrXIII 770694 . A G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=100;Dels=0.00;FS=5.933;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=1.379;QD=21.59;ReadPosRankSum=1.661;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2192,261,0 chrXIII 770726 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.28;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2588,285,0 chrXIII 770744 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=158;Dels=0.00;FS=2.580;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.255;QD=19.27;ReadPosRankSum=2.917;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3078,357,0 chrXIII 770824 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.096;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.3007;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.513;QD=23.99;ReadPosRankSum=-1.308;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4726,490,0 chrXIII 771046 . T C 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=202;Dels=0.00;FS=3.571;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-1.505;QD=20.01;ReadPosRankSum=1.715;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,197:202:99:4042,468,0 chrXIII 771058 . G A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.92;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4246,465,0 chrXIII 771109 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.45;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3625,396,0 chrXIII 771220 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.54;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3978,450,0 chrXIII 771259 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=185;Dels=0.00;FS=9.910;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.234;QD=22.43;ReadPosRankSum=2.886;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4149,468,0 chrXIII 771391 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.15;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3380,363,0 chrXIII 771409 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5458;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.29;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3406,387,0 chrXIII 771430 . G T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.08;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3583,402,0 chrXIII 771556 . A G 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=191;Dels=0.00;FS=3.956;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.256;QD=23.34;ReadPosRankSum=1.714;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4458,501,0 chrXIII 771631 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.846;QD=22.80;ReadPosRankSum=1.712;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4013,462,0 chrXIII 771742 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.5321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.06;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4002,462,0 chrXIII 771775 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=182;Dels=0.00;FS=14.684;HaplotypeScore=12.9444;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.346;QD=20.66;ReadPosRankSum=2.961;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:3761,420,0 chrXIII 771796 . A G 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.667;QD=18.18;ReadPosRankSum=2.390;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3014,339,0 chrXIII 771808 . A C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.297;DP=163;Dels=0.00;FS=5.053;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.793;QD=18.04;ReadPosRankSum=3.405;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:4,158:163:99:2974,336,0 chrXIII 771982 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=20.90;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2583,288,0 chrXIII 772120 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=123;Dels=0.00;FS=4.271;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.915;QD=21.85;ReadPosRankSum=1.704;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2720,315,0 chrXIII 772204 . A G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.096;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;MQRankSum=-0.985;QD=15.85;ReadPosRankSum=1.709;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2458,279,0 chrXIII 772205 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=17.03;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2622,279,0 chrXIII 772216 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.4278;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=13.80;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2172,237,0 chrXIII 772219 . T C 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.093;HaplotypeScore=4.0592;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;MQRankSum=-1.710;QD=12.88;ReadPosRankSum=1.689;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2081,234,0 chrXIII 772241 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=11.26;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:1992,219,0 chrXIII 772252 . A G 1768 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=10.40;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:1801,210,0 chrXIII 772261 . A G 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;MQRankSum=0.318;QD=10.42;ReadPosRankSum=1.712;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:1804,207,0 chrXIII 772282 . A G 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.5797;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;MQRankSum=-0.235;QD=11.74;ReadPosRankSum=1.687;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:1864,213,0 chrXIII 772333 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=7.5769;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.43;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2675,297,0 chrXIII 772453 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=20.77;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3003,339,0 chrXIII 772562 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.32;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1760,201,0 chrXIII 772565 . A G 1709 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.10;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1742,204,0 chrXIII 772578 . A G 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.122;QD=21.18;ReadPosRankSum=1.697;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2130,246,0 chrXIII 772660 . T G 342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.819;DP=72;Dels=0.00;FS=7.243;HaplotypeScore=51.3883;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-2.595;QD=4.75;ReadPosRankSum=4.955;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:19,48:72:45:375,45,0 chrXIII 772718 . A G 1453 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=20.46;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1486,168,0 chrXIII 772763 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.401;QD=23.54;ReadPosRankSum=2.331;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1987,228,0 chrXIII 772812 . T A 1191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.000;QD=19.85;ReadPosRankSum=1.675;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1224,141,0 chrXIII 772849 . A G 1998 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.26;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2031,234,0 chrXIII 772883 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.58;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3958,432,0 chrXIII 773055 . A G 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=3.590;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.678;QD=22.07;ReadPosRankSum=1.714;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4238,501,0 chrXIII 773415 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.13;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4391,480,0 chrXIII 773437 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.77;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4254,477,0 chrXIII 773496 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=0.542;QD=17.79;ReadPosRankSum=1.711;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:2951,336,0 chrXIII 773499 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=17.61;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2851,333,0 chrXIII 773523 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=15.61;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2483,270,0 chrXIII 773527 . A G 2425 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.3485;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=14.70;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2458,282,0 chrXIII 773583 . T G 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=3.545;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.440;QD=19.87;ReadPosRankSum=1.714;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3796,432,0 chrXIII 773634 . A G 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.013;QD=23.14;ReadPosRankSum=1.667;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4929,561,0 chrXIII 773689 . G A 5493.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.4222;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.52;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5493,594,0 chrXIII 773727 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=20.1491;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=22.73;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4683,510,0 chrXIII 774011 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=11.31;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:1583,180,0 chrXIII 774015 . A T 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.440;DP=125;Dels=0.00;FS=19.801;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=-0.615;QD=11.01;ReadPosRankSum=4.714;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:8,117:125:99:1409,159,0 chrXIII 774285 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.40;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3606,390,0 chrXIII 774298 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.86;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3674,399,0 chrXIII 774331 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.84;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3561,408,0 chrXIII 774688 . T A 2175 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=20.91;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2208,249,0 chrXIII 774696 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=20.36;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1865,204,0 chrXIII 774716 . G A 1438 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=98.5838;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=16.72;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1471,162,0 chrXIII 774827 . T A 2817 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.38;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2850,309,0 chrXIII 774886 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=23.65;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2327,258,0 chrXIII 775426 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.25;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2636,291,0 chrXIII 775628 . A T 5436.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.4445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5436,594,0 chrXIII 775737 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1356;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.40;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3093,351,0 chrXIII 775955 . A G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=144;Dels=0.00;FS=7.082;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.538;QD=18.12;ReadPosRankSum=2.415;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2643,306,0 chrXIII 775958 . G T 2723 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=17.91;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2756,309,0 chrXIII 776909 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8427;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.82;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4645,504,0 chrXIII 776933 . C T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.67;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4194,471,0 chrXIII 777032 . G C 4225.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4225,474,0 chrXIII 777121 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=5.524;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.232;QD=21.55;ReadPosRankSum=1.688;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3384,381,0 chrXIII 777163 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=132;Dels=0.00;FS=4.638;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.380;QD=21.08;ReadPosRankSum=1.705;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,127:132:99:2815,318,0 chrXIII 777314 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=146;Dels=0.00;FS=5.486;HaplotypeScore=15.8506;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.732;QD=23.53;ReadPosRankSum=-0.394;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3435,378,0 chrXIII 777456 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=9.058;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.710;QD=23.45;ReadPosRankSum=2.411;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4503,516,0 chrXIII 777532 . C G 5045.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.57;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5045,576,0 chrXIII 777899 . A C 2615 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=19.66;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2648,312,0 chrXIII 777937 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;MQRankSum=-1.302;QD=17.97;ReadPosRankSum=2.409;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2189,249,0 chrXIII 777953 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;QD=18.05;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2036,219,0 chrXIII 777964 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=15.55;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1712,195,0 chrXIII 777974 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;QD=15.91;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1688,183,0 chrXIII 777976 . T G 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=5.629;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;MQRankSum=-1.307;QD=13.96;ReadPosRankSum=1.699;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1513,174,0 chrXIII 777992 . C T 1811 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=16.03;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1844,201,0 chrXIII 778015 . T C 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=122;Dels=0.00;FS=7.456;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=-1.583;QD=17.08;ReadPosRankSum=2.409;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2117,243,0 chrXIII 778073 . C G 2092 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.92;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2125,237,0 chrXIII 778083 . A T 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.622;QD=21.05;ReadPosRankSum=1.548;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2012,213,0 chrXIII 778204 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=4.030;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=1.383;QD=22.12;ReadPosRankSum=1.705;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2886,333,0 chrXIII 778261 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.74;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2330,261,0 chrXIII 778456 . A G 3011 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.98;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3044,348,0 chrXIII 778647 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.85;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1475,171,0 chrXIII 780034 . T A 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.790;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=1.206;QD=23.25;ReadPosRankSum=0.374;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2939,312,0 chrXIII 780100 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3088,336,0 chrXIII 780241 . C T 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=4.223;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.364;QD=19.81;ReadPosRankSum=1.645;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2390,261,0 chrXIII 780244 . C G 2137 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.26;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2170,255,0 chrXIII 780517 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=180;Dels=0.00;FS=2.870;HaplotypeScore=10.6839;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.748;QD=22.48;ReadPosRankSum=2.340;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4046,456,0 chrXIII 780712 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.619;QD=22.02;ReadPosRankSum=1.711;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3722,429,0 chrXIII 780946 . G T 2364 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2397,261,0 chrXIII 781016 . C G 3575.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.68;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3575,405,0 chrXIII 781048 . A G 2826 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.74;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2859,333,0 chrXIII 781051 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.99;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3159,339,0 chrXIII 781324 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.25;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3418,384,0 chrXIII 781351 . C G 3528.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.64;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3528,408,0 chrXIII 781447 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.434;HaplotypeScore=13.2780;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.729;QD=19.71;ReadPosRankSum=1.713;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3607,408,0 chrXIII 781458 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.0633;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.86;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3356,375,0 chrXIII 781816 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2283,258,0 chrXIII 782221 . T C 2155 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.99;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2188,252,0 chrXIII 782267 . A G 2491 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.06;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2524,285,0 chrXIII 782556 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.18;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2473,279,0 chrXIII 782580 . A G 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=3.666;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.923;QD=21.77;ReadPosRankSum=1.700;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2362,276,0 chrXIII 782722 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.61;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3839,414,0 chrXIII 783184 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.98;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3654,399,0 chrXIII 783214 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.51;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3915,450,0 chrXIII 783437 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3089,336,0 chrXIII 783477 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.07;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3273,354,0 chrXIII 783745 . G C 4425.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.54;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4425,501,0 chrXIII 783895 . G T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3330,375,0 chrXIII 784138 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.26;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2838,318,0 chrXIII 784210 . T C 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.629;QD=21.84;ReadPosRankSum=1.681;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3003,342,0 chrXIII 784313 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.36;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2579,279,0 chrXIII 784524 . G T 2374 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.02;FS=0.000;HaplotypeScore=24.6526;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.98;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2407,261,0 chrXIII 784796 . G C 2174 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.18;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2207,246,0 chrXIII 784809 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.84;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2304,249,0 chrXIII 785014 . T C 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.503;QD=20.79;ReadPosRankSum=1.699;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2257,261,0 chrXIII 785216 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.72;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2476,267,0 chrXIII 785323 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.2308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2327,249,0 chrXIII 785399 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.88;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2481,282,0 chrXIII 785416 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.49;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2439,270,0 chrXIII 785533 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2659,291,0 chrXIII 785591 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.55;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3344,363,0 chrXIII 785712 . C A 2977 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=15.3129;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.73;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:3010,327,0 chrXIII 785772 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.23;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3586,408,0 chrXIII 785926 . T A 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=3.118;HaplotypeScore=6.1199;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.507;QD=22.66;ReadPosRankSum=1.711;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3717,405,0 chrXIII 785941 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.58;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3590,390,0 chrXIII 785973 . G C 2996 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.84;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3029,342,0 chrXIII 785980 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.85;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2879,318,0 chrXIII 786415 . T A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3880,426,0 chrXIII 786821 . C A 2924 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.82;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2957,321,0 chrXIII 787310 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.43;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2607,288,0 chrXIII 787311 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.80;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2695,294,0 chrXIII 787442 . A G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.874;QD=20.67;ReadPosRankSum=1.701;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2389,270,0 chrXIII 787876 . C G 2431 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.32;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2464,282,0 chrXIII 788209 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2661,297,0 chrXIII 788573 . G T 2327 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2360,258,0 chrXIII 788656 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.16;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2360,270,0 chrXIII 788743 . A G 2618 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.37;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2651,297,0 chrXIII 788848 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.41;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2005,222,0 chrXIII 788873 . T C 1640 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.50;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1673,189,0 chrXIII 788915 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.21;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2090,237,0 chrXIII 789039 . G C 1751 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.35;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1784,201,0 chrXIII 789063 . C T 1068 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.41;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:58:99:1101,126,0 chrXIII 789071 . G T 924 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.66;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:957,111,0 chrXIII 789101 . G A 749 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=19.71;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:90:782,90,0 chrXIII 789225 . T A 436 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.17;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:51:469,51,0 chrXIII 789267 . G T 153.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=13.91;SB=-1.039e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:186,21,0 chrXIII 789347 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.7991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1397,153,0 chrXIII 790001 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.64;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1958,219,0 chrXIII 790067 . G A 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;DP=108;Dels=0.00;FS=3.304;HaplotypeScore=7.8545;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=0.728;QD=22.74;ReadPosRankSum=0.275;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2489,259,0 chrXIII 790319 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=159;Dels=0.00;FS=7.249;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.756;QD=22.48;ReadPosRankSum=2.418;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,154:159:99:3575,402,0 chrXIII 790421 . C T 4501.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.20;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4501,486,0 chrXIII 790520 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.5516;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.35;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4314,495,0 chrXIII 790550 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.644;DP=189;Dels=0.00;FS=6.028;HaplotypeScore=5.1113;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.633;QD=18.24;ReadPosRankSum=2.963;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:3448,408,0 chrXIII 790559 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.8434;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.38;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:3566,399,0 chrXIII 790664 . A T 6293.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.40;SB=-3.464e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6293,693,0 chrXIII 790712 . G A 4695.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.15;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4695,501,0 chrXIII 790727 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.71;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4190,453,0 chrXIII 790832 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.1048;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.35;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4411,489,0 chrXIII 790870 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.99;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3779,423,0 chrXIII 791636 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.0878;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.39;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3391,390,0 chrXIII 791709 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5687;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.74;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3424,369,0 chrXIII 791894 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.6684;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.59;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3570,408,0 chrXIII 793043 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.8614;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.606;QD=20.45;ReadPosRankSum=0.722;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3967,456,0 chrXIII 793076 . T G 4053.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.56;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4053,474,0 chrXIII 793401 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.03;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3800,435,0 chrXIII 793436 . C T 4765.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.31;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4765,513,0 chrXIII 793663 . A G 4751.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.7080;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.18;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4751,531,0 chrXIII 793761 . A G 5612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=300;Dels=0.00;FS=3.025;HaplotypeScore=8.2526;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.759;QD=18.71;ReadPosRankSum=2.351;SB=-3.595e+03 GT:AD:DP:GQ:PL 1/1:2,298:300:99:5612,651,0 chrXIII 793764 . C T 5829.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=5.9413;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.96;SB=-3.779e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:5829,648,0 chrXIII 793800 . G C 4774.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.7365;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.72;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:4774,540,0 chrXIII 793888 . A G 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.7083;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.332;QD=22.15;ReadPosRankSum=2.417;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:2,222:227:99:5028,559,0 chrXIII 794088 . T C 5836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.7632;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.349;QD=23.07;ReadPosRankSum=1.718;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5836,669,0 chrXIII 794230 . C T 5143.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5143,555,0 chrXIII 794310 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.88;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5171,561,0 chrXIII 794464 . G T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0096;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.03;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3677,402,0 chrXIII 794535 . G A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.27;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3786,420,0 chrXIII 794694 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.80;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2627,282,0 chrXIII 794717 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.48;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2968,324,0 chrXIII 794755 . G T 2936 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.12;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2969,324,0 chrXIII 794814 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.64;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1799,204,0 chrXIII 794820 . T A 1697 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.25;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1730,195,0 chrXIII 794867 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.78;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1176,129,0 chrXIII 794937 . A G 584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.535;QD=16.69;ReadPosRankSum=1.634;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,34:35:69:617,69,0 chrXIII 794978 . T C 884 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:917,108,0 chrXIII 795009 . T A 849 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:882,99,0 chrXIII 795242 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.26;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2281,258,0 chrXIII 795247 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.37;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2362,258,0 chrXIII 795783 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3722,408,0 chrXIII 795834 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.98;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4001,456,0 chrXIII 795946 . T C 5348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.7338;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.100;QD=23.66;ReadPosRankSum=1.717;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5348,600,0 chrXIII 796280 . T C 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=192;Dels=0.00;FS=12.355;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.168;QD=23.76;ReadPosRankSum=2.964;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4562,510,0 chrXIII 796431 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.65;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2175,243,0 chrXIII 796432 . T C 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=4.079;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.693;QD=19.75;ReadPosRankSum=1.606;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2225,246,0 chrXIII 796448 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.52;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2598,291,0 chrXIII 796580 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=25.30;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2942,324,0 chrXIII 796648 . T C 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;MQRankSum=-0.196;QD=20.98;ReadPosRankSum=1.667;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2278,261,0 chrXIII 796650 . T A 2300 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=21.70;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2333,249,0 chrXIII 796780 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.95;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3832,435,0 chrXIII 796837 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1076;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=18.04;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2847,312,0 chrXIII 796868 . A T 1933 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=14.01;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1966,222,0 chrXIII 796877 . A T 1441 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=2.932;HaplotypeScore=5.3416;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;MQRankSum=2.055;QD=11.00;ReadPosRankSum=2.262;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:1474,165,0 chrXIII 796879 . T C 1421 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.455;DP=135;Dels=0.00;FS=11.536;HaplotypeScore=5.2279;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;MQRankSum=-1.241;QD=10.53;ReadPosRankSum=3.361;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:5,130:135:99:1454,168,0 chrXIII 796885 . A G 1481 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=133;Dels=0.00;FS=7.052;HaplotypeScore=8.4551;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;MQRankSum=0.255;QD=11.14;ReadPosRankSum=2.393;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,128:133:99:1514,177,0 chrXIII 796913 . A G 2655 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=17.58;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2688,309,0 chrXIII 796998 . A G 4336.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.79;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4336,492,0 chrXIII 797041 . A T 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=3.632;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=0.181;QD=20.37;ReadPosRankSum=1.716;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4278,465,0 chrXIII 797048 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=215;Dels=0.00;FS=2.929;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-0.177;QD=19.47;ReadPosRankSum=2.427;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4186,468,0 chrXIII 797146 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.733;DP=170;Dels=0.00;FS=12.307;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.615;QD=19.90;ReadPosRankSum=3.723;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:5,162:170:99:3383,396,0 chrXIII 797164 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=0.130;QD=21.03;ReadPosRankSum=0.303;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3386,363,0 chrXIII 797223 . A C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=182;Dels=0.00;FS=2.715;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.709;QD=21.58;ReadPosRankSum=2.382;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3927,438,0 chrXIII 797362 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.337;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.828;QD=21.23;ReadPosRankSum=1.682;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2984,339,0 chrXIII 797379 . A G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=130;Dels=0.00;FS=6.044;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.047;QD=20.64;ReadPosRankSum=2.791;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2716,309,0 chrXIII 797401 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.58;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2817,318,0 chrXIII 797456 . T G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=161;Dels=0.00;FS=8.225;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.213;QD=22.17;ReadPosRankSum=3.383;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:4,156:161:99:3570,411,0 chrXIII 797498 . T C 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=169;Dels=0.00;FS=5.260;HaplotypeScore=12.9571;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.346;QD=24.05;ReadPosRankSum=3.366;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:4064,456,0 chrXIII 797563 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=154;Dels=0.00;FS=8.265;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.978;QD=20.59;ReadPosRankSum=2.369;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3204,375,0 chrXIII 797587 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3880;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.45;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3353,387,0 chrXIII 797644 . A G 2919 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.71;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2952,348,0 chrXIII 797666 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.2746;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.086;QD=17.13;ReadPosRankSum=1.713;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3083,354,0 chrXIII 797688 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.14;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:3881,423,0 chrXIII 797991 . C T 4926.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.39;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4926,537,0 chrXIII 798060 . G C 3399.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=19.76;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3399,387,0 chrXIII 798063 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=179;Dels=0.00;FS=2.675;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-1.359;QD=19.17;ReadPosRankSum=2.353;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3431,387,0 chrXIII 798090 . T C 2210 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=15.35;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2243,258,0 chrXIII 798109 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.72;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1803,201,0 chrXIII 798265 . T A 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.807;DP=141;Dels=0.00;FS=11.741;HaplotypeScore=127.5068;MLEAC=1;MLEAF=0.500;MQ=50.35;MQ0=0;MQRankSum=2.189;QD=0.21;ReadPosRankSum=-5.016;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:131,10:141:29:59,0,29 chrXIII 798447 . T A 2130 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=21.52;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2163,246,0 chrXIII 798450 . C G 2003 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=20.03;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2036,228,0 chrXIII 798485 . T G 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=117;Dels=0.00;FS=2.461;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=-0.557;QD=20.68;ReadPosRankSum=2.940;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2453,279,0 chrXIII 798592 . T G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.021;QD=18.61;ReadPosRankSum=1.670;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2154,246,0 chrXIII 798593 . T G 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.493;QD=18.58;ReadPosRankSum=1.637;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2133,237,0 chrXIII 798703 . T C 3406.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=21.97;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3406,399,0 chrXIII 798722 . C G 2688 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=18.93;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,137:142:99:2721,315,0 chrXIII 798739 . C A 2303 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=16.33;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2336,270,0 chrXIII 798745 . A T 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=135;Dels=0.00;FS=9.427;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=0.784;QD=15.19;ReadPosRankSum=2.903;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2083,231,0 chrXIII 798961 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.22;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2898,333,0 chrXIII 799366 . G T 2877 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2910,321,0 chrXIII 799519 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.3329;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.58;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3523,393,0 chrXIII 799870 . A G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=7.317;HaplotypeScore=8.0552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.046;QD=22.74;ReadPosRankSum=2.413;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3080,351,0 chrXIII 800212 . T C 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=135;Dels=0.00;FS=5.976;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.782;QD=21.24;ReadPosRankSum=2.933;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2900,327,0 chrXIII 800233 . T C 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.535;QD=21.31;ReadPosRankSum=1.656;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2931,333,0 chrXIII 800264 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.41;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2773,303,0 chrXIII 800350 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.90;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2641,291,0 chrXIII 800368 . T C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.651;DP=164;Dels=0.00;FS=12.314;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.669;QD=17.45;ReadPosRankSum=2.497;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:5,158:164:99:2895,316,0 chrXIII 800425 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.80;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3536,405,0 chrXIII 800554 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=24.29;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3352,372,0 chrXIII 800561 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.14;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3404,393,0 chrXIII 800671 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.732;QD=22.03;ReadPosRankSum=1.673;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3921,447,0 chrXIII 800705 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=3.017;HaplotypeScore=19.1228;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.837;QD=21.97;ReadPosRankSum=2.359;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3603,414,0 chrXIII 800812 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.53;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3444,393,0 chrXIII 800816 . A C 3616.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.15;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3616,402,0 chrXIII 800866 . C A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.48;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3646,405,0 chrXIII 800900 . T G 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.506;QD=23.01;ReadPosRankSum=1.713;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4257,486,0 chrXIII 800977 . A G 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=182;Dels=0.00;FS=3.035;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.668;QD=21.19;ReadPosRankSum=1.713;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:3856,441,0 chrXIII 801034 . T C 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-0.437;QD=22.28;ReadPosRankSum=0.981;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4345,491,0 chrXIII 801050 . G A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.3824;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=22.67;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4715,528,0 chrXIII 801144 . T A 4901.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.59;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4901,555,0 chrXIII 801226 . G A 3589.01 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=17.86;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3589,408,0 chrXIII 801227 . A G 3625.01 SnpCluster AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=18.40;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3625,408,0 chrXIII 801232 . T C 3351.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=202;Dels=0.00;FS=3.025;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=-1.526;QD=16.59;ReadPosRankSum=2.425;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:3351,387,0 chrXIII 801254 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=16.59;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3151,339,0 chrXIII 801280 . A G 2536 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=14.83;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2569,294,0 chrXIII 801282 . A C 2474 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;MQRankSum=-0.625;QD=14.64;ReadPosRankSum=1.712;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2507,288,0 chrXIII 801283 . T A 2581 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=4.981;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;MQRankSum=-0.917;QD=15.18;ReadPosRankSum=1.712;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2614,291,0 chrXIII 801296 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=16.40;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2788,315,0 chrXIII 801794 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.33;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3066,333,0 chrXIII 802071 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.23;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3260,363,0 chrXIII 802080 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3489;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.771;QD=19.20;ReadPosRankSum=1.290;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3144,354,0 chrXIII 802119 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2102;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.58;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3166,348,0 chrXIII 802161 . C T 3910.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.00;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3910,432,0 chrXIII 802188 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.05;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4219,477,0 chrXIII 802329 . A C 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.781;QD=21.34;ReadPosRankSum=1.696;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4119,486,0 chrXIII 802356 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.85;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3670,408,0 chrXIII 802432 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=164;Dels=0.00;FS=9.273;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.914;QD=22.35;ReadPosRankSum=2.957;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3666,423,0 chrXIII 802461 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.94;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3991,453,0 chrXIII 802543 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.688;QD=22.41;ReadPosRankSum=1.708;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3272,369,0 chrXIII 802566 . C A 3155 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.54;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3188,342,0 chrXIII 802644 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.46;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3302,378,0 chrXIII 802701 . T A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=22.87;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3430,384,0 chrXIII 802822 . T G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;MQRankSum=0.269;QD=18.91;ReadPosRankSum=1.711;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3077,360,0 chrXIII 802825 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=20.73;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3275,354,0 chrXIII 802854 . T C 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=136;Dels=0.00;FS=2.581;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;MQRankSum=0.726;QD=15.93;ReadPosRankSum=2.815;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2200,249,0 chrXIII 802876 . G T 1680 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=15.00;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1713,192,0 chrXIII 802878 . T C 1580 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=115;Dels=0.00;FS=5.284;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;MQRankSum=-3.350;QD=13.74;ReadPosRankSum=3.381;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:4,111:115:99:1613,186,0 chrXIII 802880 . C T 1637 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=14.11;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1670,186,0 chrXIII 802912 . A G 2492 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=16.29;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2525,285,0 chrXIII 802921 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=17.20;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2837,309,0 chrXIII 802960 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=3.774;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-0.689;QD=18.92;ReadPosRankSum=1.713;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3520,405,0 chrXIII 802989 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=4.011;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-1.291;QD=19.60;ReadPosRankSum=1.681;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4017,471,0 chrXIII 803013 . G A 3904.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=20.77;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3904,435,0 chrXIII 803021 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.8382;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.843;QD=20.50;ReadPosRankSum=1.079;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3915,405,0 chrXIII 803149 . T C 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.198;DP=187;Dels=0.00;FS=8.487;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.322;QD=22.90;ReadPosRankSum=3.366;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:4283,489,0 chrXIII 803211 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.269;QD=22.01;ReadPosRankSum=1.681;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4447,516,0 chrXIII 803536 . T G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=15.9269;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.860;QD=22.07;ReadPosRankSum=1.655;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3013,345,0 chrXIII 803680 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.52;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2788,315,0 chrXIII 803799 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=19.0134;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.54;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4012,438,0 chrXIII 803857 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.48;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3113,351,0 chrXIII 803905 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.36;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3527,384,0 chrXIII 804026 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.96;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4043,438,0 chrXIII 804103 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.93;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2752,315,0 chrXIII 804246 . T C 2220 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.75;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2253,267,0 chrXIII 804397 . C A 1787 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.42;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1820,204,0 chrXIII 804400 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.7839;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=17.19;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1769,201,0 chrXIII 804770 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=21.09;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3817,435,0 chrXIII 804774 . A T 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=180;Dels=0.00;FS=2.944;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-0.716;QD=21.20;ReadPosRankSum=2.368;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3816,411,0 chrXIII 804798 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=19.31;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3611,384,0 chrXIII 804802 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.57;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3546,381,0 chrXIII 804869 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.84;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3376,381,0 chrXIII 804888 . T A 3208 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.53;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3241,351,0 chrXIII 804970 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.42;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2603,285,0 chrXIII 804991 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=21.80;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2060,222,0 chrXIII 805182 . G T 324 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=14.09;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,21:23:39:357,39,0 chrXIII 805204 . T C 101.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=8.44;SB=-5.014e+01 GT:AD:DP:GQ:PL 1/1:0,11:12:15:134,15,0 chrXIII 805213 . G A 156.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=5.9131;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=14.19;SB=-9.994e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:189,21,0 chrXIII 805217 . G T 125.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=8.8665;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=9.63;SB=-1.209e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:18:158,18,0 chrXIII 805270 . C A 1174 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.60;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1207,138,0 chrXIII 805324 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.20;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2199,261,0 chrXIII 805362 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.09;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2585,291,0 chrXIII 805419 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.84;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1780,204,0 chrXIII 805436 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.67;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1606,177,0 chrXIII 805455 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.05;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1938,225,0 chrXIII 805482 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.7051;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.06;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2521,285,0 chrXIII 805521 . C T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.49;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3631,417,0 chrXIII 805587 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.06;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4259,462,0 chrXIII 805724 . C T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1028;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.20;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3852,417,0 chrXIII 805974 . T A 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.747;QD=22.19;ReadPosRankSum=1.681;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4527,489,0 chrXIII 806068 . G T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.57;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4288,465,0 chrXIII 806118 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.237;QD=21.49;ReadPosRankSum=1.675;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3912,450,0 chrXIII 806533 . A T 2598 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.3273;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.30;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2631,297,0 chrXIII 806613 . T C 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=99;Dels=0.00;FS=6.247;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.616;QD=20.85;ReadPosRankSum=2.349;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2097,240,0 chrXIII 807264 . G A 4323.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6731;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.52;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4323,480,0 chrXIII 807432 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=134;Dels=0.00;FS=6.888;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.717;QD=20.49;ReadPosRankSum=2.357;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2778,324,0 chrXIII 807457 . T C 2905 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.87;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2938,330,0 chrXIII 807522 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.16;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3381,369,0 chrXIII 807595 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1236;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.50;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3384,387,0 chrXIII 807655 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=25.09;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3462,375,0 chrXIII 807742 . A G 2151 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=17.63;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2184,246,0 chrXIII 807743 . T G 2095 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.31;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2128,240,0 chrXIII 807915 . C G 2801 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=23.54;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2834,327,0 chrXIII 807929 . T A 2613 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=21.96;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2646,300,0 chrXIII 808003 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.36;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2105,237,0 chrXIII 808073 . A G 2217 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.32;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2250,252,0 chrXIII 808186 . C A 1223 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=50.6906;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=16.99;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1256,141,0 chrXIII 808191 . G T 1109 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=55.0450;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=15.62;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:71:99:1142,123,0 chrXIII 808327 . T C 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=2.664;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;MQRankSum=1.913;QD=22.24;ReadPosRankSum=2.355;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1768,210,0 chrXIII 808340 . C G 1700 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=22.97;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1733,201,0 chrXIII 808352 . C G 1446 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;QD=20.37;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1479,177,0 chrXIII 808381 . G T 1229 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=20.83;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1262,144,0 chrXIII 808383 . T A 1245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=6.730;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;MQRankSum=-0.277;QD=21.47;ReadPosRankSum=2.322;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1278,147,0 chrXIII 808407 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=23.31;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2504,285,0 chrXIII 808472 . T A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=24.96;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3519,390,0 chrXIII 808478 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=23.51;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3315,372,0 chrXIII 808620 . C T 255 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=16;QD=8.79;SB=-4.899e+01 GT:AD:DP:GQ:PL 1/1:2,27:29:33:288,33,0 chrXIII 808802 . T C 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;DP=24;Dels=0.00;FS=29.465;HaplotypeScore=12.0785;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=6;MQRankSum=2.031;QD=2.08;ReadPosRankSum=2.208;SB=-2.983e+00 GT:AD:DP:GQ:PL 0/1:14,9:24:38:80,0,38 chrXIII 808828 . G T 63.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;DP=12;Dels=0.00;FS=10.792;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.93;MQ0=3;MQRankSum=1.179;QD=5.25;ReadPosRankSum=-0.067;SB=-2.751e+00 GT:AD:DP:GQ:PL 0/1:4,8:12:35:93,0,35 chrXIII 808909 . A T 13.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.39;MQ0=0;MQRankSum=2.309;QD=0.19;ReadPosRankSum=2.380;SB=-3.027e+00 GT:AD:DP:GQ:PL 0/1:68,2:70:19:43,0,19 chrXIII 808933 . G A 664 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=7.30;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:78:697,78,0 chrXIII 808966 . A T 36.12 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;DP=130;Dels=0.00;FS=12.548;HaplotypeScore=108.0729;MLEAC=1;MLEAF=0.500;MQ=41.47;MQ0=0;MQRankSum=1.904;QD=0.28;ReadPosRankSum=3.057;SB=-1.054e+03 GT:AD:DP:GQ:PL 0/1:8,122:130:13:66,0,13 chrXIII 809084 . T C 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.858;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;MQRankSum=-1.388;QD=20.36;ReadPosRankSum=1.683;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2924,345,0 chrXIII 809106 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=21.71;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3116,348,0 chrXIII 809198 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=3.893;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-0.796;QD=21.52;ReadPosRankSum=1.712;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3744,420,0 chrXIII 809204 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=21.99;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3760,414,0 chrXIII 809255 . G A 1891 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=4.651;HaplotypeScore=2.8656;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;MQRankSum=0.739;QD=13.22;ReadPosRankSum=1.393;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:1924,207,0 chrXIII 809257 . C T 1992 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=14.23;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2025,219,0 chrXIII 809261 . C T 1799 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=13.73;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1832,210,0 chrXIII 809264 . A G 1697 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=13.47;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1730,198,0 chrXIII 809275 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=14.98;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1845,204,0 chrXIII 809325 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=17.94;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1719,198,0 chrXIII 809473 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=19.76;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1535,168,0 chrXIII 809607 . C A 2105 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.65;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2138,234,0 chrXIII 809719 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.35;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2858,309,0 chrXIII 809851 . G A 6199.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=17.7623;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.48;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6199,684,0 chrXIII 809908 . G A 6033.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.0792;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.94;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:6033,655,0 chrXIII 810085 . G A 5843.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.6003;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.28;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5843,654,0 chrXIII 810229 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0676;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.05;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3925,429,0 chrXIII 810415 . A T 5260.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.91;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5260,579,0 chrXIII 810904 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=17.9764;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.62;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3610,411,0 chrXIII 810963 . C A 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.672;QD=21.32;ReadPosRankSum=1.202;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3646,402,0 chrXIII 811133 . A G 5906.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.62;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5906,675,0 chrXIII 811161 . A G 5410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=238;Dels=0.00;FS=3.704;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.431;QD=22.73;ReadPosRankSum=1.659;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:5410,606,0 chrXIII 811646 . G A 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=0.855;QD=13.74;ReadPosRankSum=1.140;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2204,246,0 chrXIII 811691 . T C 1198 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=8.26;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1231,144,0 chrXIII 811741 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.15;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3304,363,0 chrXIII 811756 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.65;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3431,387,0 chrXIII 812113 . C G 3916.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.17;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3916,447,0 chrXIII 812196 . A C 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=199;Dels=0.00;FS=2.814;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.882;QD=19.89;ReadPosRankSum=2.314;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3958,447,0 chrXIII 812217 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.32;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3683,423,0 chrXIII 812580 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.58;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3819,447,0 chrXIII 812787 . T A 6098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.567;QD=24.20;ReadPosRankSum=1.718;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:6098,658,0 chrXIII 813072 . G C 4413.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=16.9944;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=16.53;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:4413,513,0 chrXIII 813174 . G C 3455.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=16.45;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:3455,399,0 chrXIII 813178 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=212;Dels=0.00;FS=3.605;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.402;QD=16.76;ReadPosRankSum=1.683;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:3554,399,0 chrXIII 813408 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.551;QD=19.70;ReadPosRankSum=1.700;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4275,498,0 chrXIII 813547 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.1579;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.159;QD=22.01;ReadPosRankSum=1.686;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3368,387,0 chrXIII 813634 . A G 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.992;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=0.170;QD=22.64;ReadPosRankSum=1.692;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3962,453,0 chrXIII 813968 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8584;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.75;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2710,300,0 chrXIII 814003 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8042;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.09;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3006,330,0 chrXIII 814155 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3127,342,0 chrXIII 814438 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3615,393,0 chrXIII 814574 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4764,519,0 chrXIII 814898 . A G 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.326;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.398;QD=22.61;ReadPosRankSum=1.702;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2610,306,0 chrXIII 815081 . T G 3650.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=9.6683;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.55;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3650,426,0 chrXIII 815125 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.00;FS=7.184;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.317;QD=23.80;ReadPosRankSum=2.422;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4308,486,0 chrXIII 815146 . C T 4547.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.20;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4547,492,0 chrXIII 815338 . A G 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.115;QD=21.10;ReadPosRankSum=2.354;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2755,315,0 chrXIII 815589 . A C 1220 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1253,147,0 chrXIII 815765 . A G 2826 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.16;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2859,336,0 chrXIII 815882 . T C 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=191;Dels=0.00;FS=2.775;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.649;QD=23.81;ReadPosRankSum=2.398;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4547,519,0 chrXIII 815905 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.80;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4237,468,0 chrXIII 815932 . A C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=6.327;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.719;QD=22.83;ReadPosRankSum=2.419;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,157:162:99:3698,417,0 chrXIII 815956 . A G 3796.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.33;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3796,429,0 chrXIII 815979 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.23;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3668,396,0 chrXIII 816075 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.4642;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.24;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3951,444,0 chrXIII 816131 . A G 3199 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.06;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3232,363,0 chrXIII 816209 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.00;FS=3.114;HaplotypeScore=4.1409;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.259;QD=20.33;ReadPosRankSum=1.514;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2656,297,0 chrXIII 816212 . A G 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=133;Dels=0.00;FS=6.461;HaplotypeScore=6.5069;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=0.009;QD=19.29;ReadPosRankSum=2.375;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2599,297,0 chrXIII 816290 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.74;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2881,318,0 chrXIII 816350 . A T 2836 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.98;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2869,321,0 chrXIII 816512 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.16;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3648,399,0 chrXIII 816576 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8219;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.71;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2920,321,0 chrXIII 817301 . C A 3192 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.14;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3225,351,0 chrXIII 817457 . T C 2812 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=17.3687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2845,321,0 chrXIII 817520 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2796,312,0 chrXIII 817868 . G A 5616.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=19.5047;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.94;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,252:256:99:5616,633,0 chrXIII 817903 . T C 6963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=305;Dels=0.00;FS=5.534;HaplotypeScore=17.6237;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-0.023;QD=22.83;ReadPosRankSum=2.957;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:3,302:305:99:6963,804,0 chrXIII 818165 . G A 7442.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.61;SB=-4.044e+03 GT:AD:DP:GQ:PL 1/1:0,361:361:99:7442,819,0 chrXIII 818167 . T C 7143.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=366;Dels=0.00;FS=11.920;HaplotypeScore=6.6402;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.776;QD=19.52;ReadPosRankSum=2.931;SB=-3.659e+03 GT:AD:DP:GQ:PL 1/1:3,360:366:99:7143,822,0 chrXIII 818204 . A G 7219.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=412;Dels=0.00;FS=5.359;HaplotypeScore=22.6277;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.335;QD=17.52;ReadPosRankSum=2.958;SB=-3.838e+03 GT:AD:DP:GQ:PL 1/1:3,407:411:99:7219,845,0 chrXIII 818309 . G T 6538.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.58;SB=-3.532e+03 GT:AD:DP:GQ:PL 1/1:0,301:303:99:6538,732,0 chrXIII 818360 . G A 6624.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=12.8289;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=23.49;SB=-3.615e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6624,724,0 chrXIII 818478 . A G 5142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.713;QD=20.09;ReadPosRankSum=1.718;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5142,585,0 chrXIII 818504 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=18.13;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4242,474,0 chrXIII 818517 . C G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=17.19;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:3610,414,0 chrXIII 818519 . T G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=4.225;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-1.666;QD=17.07;ReadPosRankSum=1.715;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:3585,405,0 chrXIII 818591 . G A 4447.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.7760;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.49;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4447,492,0 chrXIII 818759 . G C 4958.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.7205;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.13;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,219:224:99:4958,570,0 chrXIII 818815 . T A 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=220;Dels=0.00;FS=2.562;HaplotypeScore=18.0864;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=1.244;QD=23.25;ReadPosRankSum=2.968;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:3,215:220:99:5116,582,0 chrXIII 818970 . T C 7120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=312;Dels=0.00;FS=2.912;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-2.180;QD=22.82;ReadPosRankSum=2.434;SB=-3.325e+03 GT:AD:DP:GQ:PL 1/1:2,308:312:99:7120,816,0 chrXIII 819018 . C T 5194.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=17.37;SB=-3.318e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:5194,570,0 chrXIII 819065 . C G 1919 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=7.21;SB=-3.386e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:1952,222,0 chrXIII 819114 . C T 4635.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=16.15;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:4635,525,0 chrXIII 819141 . A C 5266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=294;Dels=0.00;FS=2.851;HaplotypeScore=12.8480;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.188;QD=17.91;ReadPosRankSum=2.408;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:2,291:294:99:5266,615,0 chrXIII 819393 . A T 9409.01 filter AC=2;AF=1.00;AN=2;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=25.0159;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.00;SB=-4.240e+03 GT:AD:DP:GQ:PL 1/1:0,391:392:99:9409,1036,0 chrXIII 819699 . T C 5729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=20.5933;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.630;QD=19.76;ReadPosRankSum=0.303;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,286:290:99:5729,660,0 chrXIII 819776 . T C 4818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=242;Dels=0.00;FS=7.859;HaplotypeScore=19.3941;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.200;QD=19.91;ReadPosRankSum=2.419;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:2,237:242:99:4818,558,0 chrXIII 819989 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.40;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4212,459,0 chrXIII 820184 . C A 5253.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.35;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5253,585,0 chrXIII 820241 . C T 5925.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=22.8178;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.70;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5925,660,0 chrXIII 820351 . T C 6418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.546;QD=21.98;ReadPosRankSum=1.661;SB=-3.604e+03 GT:AD:DP:GQ:PL 1/1:1,291:292:99:6418,738,0 chrXIII 820753 . G A 5405.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.24;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5405,591,0 chrXIII 821023 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.3707;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.23;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4090,468,0 chrXIII 821368 . A G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.784;QD=21.22;ReadPosRankSum=1.696;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4032,459,0 chrXIII 821371 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.8004;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.78;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4031,444,0 chrXIII 821386 . T C 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.710;HaplotypeScore=8.0146;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.648;QD=20.25;ReadPosRankSum=1.714;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3948,444,0 chrXIII 821494 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=145;Dels=0.00;FS=2.839;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.178;QD=22.30;ReadPosRankSum=2.381;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3269,375,0 chrXIII 821656 . A G 3031 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.05;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3064,348,0 chrXIII 821686 . T G 3290.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.79;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3290,381,0 chrXIII 822331 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.9765;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.20;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4019,468,0 chrXIII 822465 . G T 2969 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=22.66;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,127:131:99:3002,327,0 chrXIII 822473 . T C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=121;Dels=0.02;FS=15.603;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;MQRankSum=-0.824;QD=22.60;ReadPosRankSum=2.387;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2768,309,0 chrXIII 822490 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=22.25;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2792,318,0 chrXIII 822625 . A G 195.01 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=38.7094;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=3.36;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:58:27:228,27,0 chrXIII 822844 . A G 2835 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.32;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2868,327,0 chrXIII 822889 . A G 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=3.073;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.336;QD=21.71;ReadPosRankSum=1.658;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3072,345,0 chrXIII 823029 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=166;Dels=0.00;FS=14.969;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.227;QD=22.89;ReadPosRankSum=3.407;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3800,432,0 chrXIII 823201 . C T 5501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.121;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.8251;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.573;QD=24.45;ReadPosRankSum=-1.069;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5501,553,0 chrXIII 823454 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3612,393,0 chrXIII 823734 . C T 4880.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.4671;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.16;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4880,540,0 chrXIII 824112 . C T 5297.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.6133;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.75;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5297,576,0 chrXIII 824526 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.16;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3811,417,0 chrXIII 824589 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=2.605;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.886;QD=21.53;ReadPosRankSum=2.420;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3552,405,0 chrXIII 824598 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.896;QD=21.34;ReadPosRankSum=2.370;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3308,378,0 chrXIII 824640 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.66;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2616,297,0 chrXIII 824795 . C A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.33;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3245,375,0 chrXIII 824813 . A G 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=4.447;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-1.391;QD=18.95;ReadPosRankSum=1.708;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2724,324,0 chrXIII 824831 . T G 2563 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.31;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2596,303,0 chrXIII 824885 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.47;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3426,390,0 chrXIII 825542 . C G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.2655;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.51;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3487,405,0 chrXIII 825593 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6612;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.09;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3607,396,0 chrXIII 825605 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.035;HaplotypeScore=8.9072;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.849;QD=19.00;ReadPosRankSum=1.710;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3054,357,0 chrXIII 825734 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.4922;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.04;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3940,432,0 chrXIII 825791 . A G 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=199;Dels=0.00;FS=9.411;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.081;QD=22.38;ReadPosRankSum=2.412;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4453,527,0 chrXIII 826214 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.59;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4210,477,0 chrXIII 826310 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.27;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3809,423,0 chrXIII 826392 . A T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.03;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.16;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3767,411,0 chrXIII 826394 . T G 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.785;DP=178;Dels=0.00;FS=16.464;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.297;QD=20.33;ReadPosRankSum=3.661;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:5,172:178:99:3619,411,0 chrXIII 826533 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=186;Dels=0.00;FS=6.073;HaplotypeScore=11.1622;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.114;QD=20.10;ReadPosRankSum=2.940;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:3739,432,0 chrXIII 826594 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.065;DP=193;Dels=0.00;FS=3.243;HaplotypeScore=18.9149;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.461;QD=21.45;ReadPosRankSum=1.588;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4139,465,0 chrXIII 826705 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.97;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3837,420,0 chrXIII 826727 . G A 3942.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.19;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3942,438,0 chrXIII 826779 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.69;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3095,351,0 chrXIII 826818 . T G 3108 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.02;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3141,360,0 chrXIII 826921 . A G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.456;QD=21.35;ReadPosRankSum=2.415;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3086,345,0 chrXIII 826953 . T A 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=4.200;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.043;QD=21.02;ReadPosRankSum=1.618;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2576,279,0 chrXIII 826971 . G C 2458 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8060;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.66;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2491,282,0 chrXIII 827091 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;DP=141;Dels=0.00;FS=5.472;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.135;QD=21.87;ReadPosRankSum=-1.486;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3117,345,0 chrXIII 827271 . G A 5622.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=11.3396;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.67;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5622,636,0 chrXIII 827328 . C T 6292.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.20;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6292,687,0 chrXIII 827355 . A G 5250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=233;Dels=0.00;FS=3.905;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.442;QD=22.53;ReadPosRankSum=1.702;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,230:233:99:5250,588,0 chrXIII 827427 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.4998;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.55;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4294,483,0 chrXIII 827517 . A G 5714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.403;DP=268;Dels=0.00;FS=5.138;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.315;QD=21.32;ReadPosRankSum=3.390;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:4,264:268:99:5714,666,0 chrXIII 827548 . T A 4975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=220;Dels=0.00;FS=4.791;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.638;QD=22.61;ReadPosRankSum=1.716;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4975,537,0 chrXIII 827630 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.54;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3877,423,0 chrXIII 827706 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=143;Dels=0.00;FS=2.587;HaplotypeScore=12.9415;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.697;QD=21.05;ReadPosRankSum=2.923;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3043,348,0 chrXIII 827748 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.68;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2686,291,0 chrXIII 827846 . A C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-1.158;QD=20.06;ReadPosRankSum=2.514;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3002,345,0 chrXIII 827847 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.01;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3080,345,0 chrXIII 827898 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=21.35;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2445,276,0 chrXIII 827972 . T A 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.122;QD=24.44;ReadPosRankSum=1.710;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3886,417,0 chrXIII 827994 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=171;Dels=0.00;FS=14.282;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.516;QD=21.12;ReadPosRankSum=3.367;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:3611,408,0 chrXIII 828032 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.562;QD=20.31;ReadPosRankSum=1.687;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3161,357,0 chrXIII 828055 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=146;Dels=0.00;FS=5.986;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;MQRankSum=0.270;QD=19.38;ReadPosRankSum=2.951;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:4,139:146:99:2862,327,0 chrXIII 828110 . C A 2472 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=20.10;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2505,288,0 chrXIII 828116 . T C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=126;Dels=0.00;FS=10.937;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;MQRankSum=0.368;QD=18.08;ReadPosRankSum=2.896;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2311,279,0 chrXIII 828138 . A G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-0.930;QD=19.56;ReadPosRankSum=1.703;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2400,285,0 chrXIII 828149 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=19.66;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2648,300,0 chrXIII 828228 . A G 3132 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=21.31;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3165,360,0 chrXIII 828274 . T G 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=133;Dels=0.00;FS=3.358;HaplotypeScore=6.2630;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;MQRankSum=0.666;QD=14.78;ReadPosRankSum=1.652;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:1999,237,0 chrXIII 828282 . A C 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;MQRankSum=1.210;QD=16.29;ReadPosRankSum=1.705;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2086,246,0 chrXIII 828291 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=0;QD=16.52;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2015,231,0 chrXIII 828308 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=0;QD=14.53;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1646,192,0 chrXIII 828384 . A C 1823 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=15.32;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:1856,216,0 chrXIII 828388 . T G 1895 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=16.06;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1928,216,0 chrXIII 828518 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.281;DP=153;Dels=0.00;FS=6.826;HaplotypeScore=10.2916;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=1.116;QD=22.29;ReadPosRankSum=0.442;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3410,360,0 chrXIII 828621 . A C 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=155;Dels=0.00;FS=3.522;HaplotypeScore=12.6386;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.460;QD=21.72;ReadPosRankSum=1.687;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3367,378,0 chrXIII 828927 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.442;QD=22.51;ReadPosRankSum=1.649;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3805,444,0 chrXIII 829028 . T C 4300.01 SnpCluster AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.20;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:4300,507,0 chrXIII 829030 . G A 4743.01 SnpCluster AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.08;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4743,510,0 chrXIII 829038 . A T 4636.01 SnpCluster AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.56;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4636,537,0 chrXIII 830199 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.62;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2114,231,0 chrXIII 830235 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.27;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1792,204,0 chrXIII 830265 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.72;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1794,204,0 chrXIII 830275 . C A 1961 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.55;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1994,219,0 chrXIII 830562 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.7020;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.06;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4306,471,0 chrXIII 830586 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.17;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3620,393,0 chrXIII 830589 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.22;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3565,390,0 chrXIII 830645 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.99;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2787,309,0 chrXIII 831093 . C T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4543,492,0 chrXIII 831576 . T C 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=2.873;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.320;QD=16.30;ReadPosRankSum=2.389;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1370,153,0 chrXIII 831687 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=25.04;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3831,420,0 chrXIII 831723 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=150;Dels=0.00;FS=2.741;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.109;QD=23.77;ReadPosRankSum=2.416;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:3566,402,0 chrXIII 831873 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.23;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3804,417,0 chrXIII 831918 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.58;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3205,348,0 chrXIII 831921 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.183;QD=18.80;ReadPosRankSum=1.669;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3135,354,0 chrXIII 831989 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.54;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3283,372,0 chrXIII 832077 . A T 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.167;QD=23.59;ReadPosRankSum=1.706;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3217,357,0 chrXIII 832109 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=10.3031;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=23.99;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3008,330,0 chrXIII 832143 . T C 2858 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.50;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2891,327,0 chrXIII 832285 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.818;QD=21.00;ReadPosRankSum=1.677;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2679,309,0 chrXIII 832299 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=23.20;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2678,291,0 chrXIII 832337 . A G 2368 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.33;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2401,273,0 chrXIII 832356 . T A 2160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=112;Dels=0.00;FS=7.231;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.275;QD=19.29;ReadPosRankSum=2.406;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2193,243,0 chrXIII 832917 . T A 3179 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.7301;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.77;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3212,354,0 chrXIII 833019 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.30;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3402,372,0 chrXIII 833149 . A G 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.157;QD=16.86;ReadPosRankSum=1.680;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1146,129,0 chrXIII 833453 . T C 1342 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1375,156,0 chrXIII 833534 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2850,303,0 chrXIII 833648 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4592,513,0 chrXIII 834215 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=155;Dels=0.00;FS=3.302;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.832;QD=21.88;ReadPosRankSum=1.710;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3392,393,0 chrXIII 834299 . T C 3028 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3061,345,0 chrXIII 834662 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.53;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3359,363,0 chrXIII 834670 . A G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=159;Dels=0.00;FS=6.558;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-1.337;QD=19.74;ReadPosRankSum=2.419;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3171,357,0 chrXIII 834690 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.58;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2913,327,0 chrXIII 834775 . C G 2681 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.86;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2714,309,0 chrXIII 835125 . T G 3674.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.87;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3674,420,0 chrXIII 835147 . A T 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.433;QD=22.38;ReadPosRankSum=1.693;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3939,426,0 chrXIII 835289 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.53;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3273,372,0 chrXIII 835312 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=170;Dels=0.00;FS=2.543;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.120;QD=21.00;ReadPosRankSum=2.922;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3570,411,0 chrXIII 835425 . A T 2966 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.74;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2999,339,0 chrXIII 835545 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.9593;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.81;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,186:191:99:4165,465,0 chrXIII 835676 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.93;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3105,342,0 chrXIII 835845 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.61;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3124,351,0 chrXIII 835854 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.69;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3318,366,0 chrXIII 836466 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.52;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3528,384,0 chrXIII 836660 . T C 2518 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2551,288,0 chrXIII 836730 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=132;Dels=0.00;FS=3.031;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.948;QD=22.50;ReadPosRankSum=2.412;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3003,339,0 chrXIII 837145 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.18;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3987,435,0 chrXIII 837515 . A G 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=98;Dels=0.00;FS=2.837;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.239;QD=22.02;ReadPosRankSum=2.400;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2191,246,0 chrXIII 837523 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.55;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2247,246,0 chrXIII 837798 . T G 599 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=21.39;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:72:632,72,0 chrXIII 837899 . T A 948 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=17.56;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:981,108,0 chrXIII 837900 . C A 969 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=17.30;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1002,108,0 chrXIII 837971 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=20.95;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1583,171,0 chrXIII 838151 . A G 2597 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.78;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2630,300,0 chrXIII 838157 . C G 2427 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=20.92;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2460,279,0 chrXIII 838192 . C G 2706 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.04;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2739,309,0 chrXIII 838336 . G C 3299.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.07;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3299,372,0 chrXIII 838874 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.19;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3478,399,0 chrXIII 838918 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3498,399,0 chrXIII 839353 . A C 2938 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2971,348,0 chrXIII 839871 . T C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.917;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.582;QD=22.07;ReadPosRankSum=1.682;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1578,177,0 chrXIII 840002 . T A 1834 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.22;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1867,201,0 chrXIII 840033 . C A 1763 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=69.4889;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.77;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1796,195,0 chrXIII 840667 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.9077;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.31;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3426,381,0 chrXIII 841022 . T C 3043 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.43;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3076,360,0 chrXIII 841377 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.42;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3207,348,0 chrXIII 841421 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=16.6487;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.97;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3285,357,0 chrXIII 841486 . A G 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.659;QD=21.77;ReadPosRankSum=1.708;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3168,363,0 chrXIII 841599 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.639;QD=22.06;ReadPosRankSum=1.709;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3331,375,0 chrXIII 841704 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.15;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2695,291,0 chrXIII 841893 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.910;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.419;QD=23.25;ReadPosRankSum=1.710;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3627,408,0 chrXIII 842091 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=22.60;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3062,348,0 chrXIII 842364 . G A 243 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=14.29;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,16:17:30:276,30,0 chrXIII 843238 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.1294;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.96;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3178,345,0 chrXIII 843320 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=164;Dels=0.00;FS=2.616;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.296;QD=22.45;ReadPosRankSum=2.345;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3681,414,0 chrXIII 843360 . G A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3845,444,0 chrXIII 843546 . C A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4109,456,0 chrXIII 843714 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3770;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.04;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3053,336,0 chrXIII 843858 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1273;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.89;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2978,333,0 chrXIII 843864 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.01;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2933,318,0 chrXIII 844047 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.7054;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.70;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2703,294,0 chrXIII 844681 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.218;QD=21.97;ReadPosRankSum=1.687;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3427,399,0 chrXIII 845352 . T C 5103.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.00;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5103,579,0 chrXIII 845605 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.8151;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.40;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3764,426,0 chrXIII 845840 . C A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.46;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3308,363,0 chrXIII 846009 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.97;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2801,306,0 chrXIII 846119 . T C 2531 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.80;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2564,288,0 chrXIII 846242 . C T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.97;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3560,402,0 chrXIII 846261 . C A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.66;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3335,366,0 chrXIII 846356 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.66;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3964,426,0 chrXIII 846359 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.18;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3713,402,0 chrXIII 846570 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.176;QD=22.74;ReadPosRankSum=1.716;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4958,579,0 chrXIII 846600 . T C 4411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=190;Dels=0.00;FS=8.653;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.159;QD=23.22;ReadPosRankSum=3.395;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:4,185:190:99:4411,501,0 chrXIII 846746 . T C 3981.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.31;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3981,456,0 chrXIII 846833 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.994;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.166;QD=21.55;ReadPosRankSum=1.619;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3319,378,0 chrXIII 846853 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.65;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3681,420,0 chrXIII 846992 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.436;QD=24.42;ReadPosRankSum=1.703;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2915,327,0 chrXIII 847205 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.78;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3890,444,0 chrXIII 847610 . T A 3151 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3184,351,0 chrXIII 847781 . T C 5194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=235;Dels=0.00;FS=2.567;HaplotypeScore=18.7102;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.315;QD=22.10;ReadPosRankSum=2.910;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:3,230:234:99:5194,597,0 chrXIII 848417 . G C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.72;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3357,396,0 chrXIII 848429 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.49;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3567,387,0 chrXIII 848495 . A G 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.342;QD=19.41;ReadPosRankSum=1.683;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2809,315,0 chrXIII 848515 . A C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.177;QD=20.08;ReadPosRankSum=2.412;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2683,303,0 chrXIII 848560 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.92;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2583,285,0 chrXIII 848643 . T C 2871 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.73;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2904,333,0 chrXIII 848759 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7370;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.51;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3339,369,0 chrXIII 849011 . A G 2392 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.44;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2425,273,0 chrXIII 849036 . C A 2296 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.68;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2329,255,0 chrXIII 849836 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=143;Dels=0.00;FS=2.813;HaplotypeScore=9.7971;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.215;QD=21.85;ReadPosRankSum=2.312;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3158,351,0 chrXIII 849890 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.03;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3730,408,0 chrXIII 850515 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.54;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3076,330,0 chrXIII 850563 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.24;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2561,288,0 chrXIII 850587 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.51;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2507,276,0 chrXIII 851409 . T A 3175 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.6395;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.35;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3208,348,0 chrXIII 851620 . T A 1602 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.89;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1635,180,0 chrXIII 851747 . T A 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;DP=54;Dels=0.02;FS=35.858;HaplotypeScore=30.4759;MLEAC=1;MLEAF=0.500;MQ=53.97;MQ0=0;MQRankSum=-2.246;QD=1.07;ReadPosRankSum=-1.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,21:53:88:88,0,233 chrXIII 851798 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.85;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1576,180,0 chrXIII 851822 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.98;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1984,225,0 chrXIII 851845 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.58;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1865,201,0 chrXIII 851869 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=17.76;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1543,168,0 chrXIII 851894 . A G 1544 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.95;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1577,180,0 chrXIII 851914 . A G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=3.570;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.514;QD=19.01;ReadPosRankSum=1.694;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1763,198,0 chrXIII 852052 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.06;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3390,390,0 chrXIII 852118 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.29;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2396,261,0 chrXIII 852219 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.63;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2008,222,0 chrXIII 852220 . T C 1950 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.89;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1983,222,0 chrXIII 852243 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.99;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2236,243,0 chrXIII 852752 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.53;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3263,357,0 chrXIII 852839 . T C 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=185;Dels=0.00;FS=3.283;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.411;QD=23.14;ReadPosRankSum=1.675;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,180:185:99:4280,486,0 chrXIII 852956 . T A 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.7111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.476;QD=22.54;ReadPosRankSum=1.653;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3967,450,0 chrXIII 853001 . G A 4631.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.99;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4631,510,0 chrXIII 853493 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.13;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3408,366,0 chrXIII 853553 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.90;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3303,357,0 chrXIII 853802 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8700;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.46;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3188,360,0 chrXIII 854030 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.73;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4160,456,0 chrXIII 854207 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.93;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4320,492,0 chrXIII 854292 . T A 2840 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.19;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2873,327,0 chrXIII 854525 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.12;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1180,138,0 chrXIII 855008 . A G 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=112;Dels=0.00;FS=2.787;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.124;QD=19.30;ReadPosRankSum=2.382;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:2,107:112:99:2195,246,0 chrXIII 855302 . T A 1853 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.9742;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.53;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1886,204,0 chrXIII 855598 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.24;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3240,354,0 chrXIII 855635 . G T 2862 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.19;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2895,321,0 chrXIII 855825 . A G 2603 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.83;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2636,297,0 chrXIII 855975 . T C 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.148;QD=21.84;ReadPosRankSum=1.705;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2850,327,0 chrXIII 856026 . A G 3175 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.90;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3208,366,0 chrXIII 856038 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.64;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3333,363,0 chrXIII 856042 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.30;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3118,345,0 chrXIII 856401 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.1130;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.02;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3730,411,0 chrXIII 856554 . T A 2591 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2624,291,0 chrXIII 856673 . T C 2518 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2551,285,0 chrXIII 856807 . A G 2362 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.87;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2395,270,0 chrXIII 856994 . C T 4452.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=25.73;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4452,477,0 chrXIII 857240 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4705;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.67;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3968,459,0 chrXIII 857306 . A G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=6.273;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.150;QD=23.12;ReadPosRankSum=2.410;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2900,327,0 chrXIII 857448 . C G 3002 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.44;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:3035,348,0 chrXIII 857478 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.942;DP=158;Dels=0.00;FS=14.369;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.241;QD=21.58;ReadPosRankSum=4.125;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:6,151:158:99:3410,393,0 chrXIII 857520 . A G 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=3.680;HaplotypeScore=9.8054;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.274;QD=22.53;ReadPosRankSum=1.677;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4258,486,0 chrXIII 857605 . A C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.058;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.4140;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.211;QD=21.76;ReadPosRankSum=2.074;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3460,380,0 chrXIII 857736 . G A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.5767;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.37;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5240,570,0 chrXIII 857797 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=185;Dels=0.00;FS=5.391;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.186;QD=21.18;ReadPosRankSum=2.907;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3919,444,0 chrXIII 857842 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4086,468,0 chrXIII 859063 . A G 610 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:643,72,0 chrXIII 859155 . T G 441 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.05;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:474,54,0 chrXIII 859329 . A G 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=78;Dels=0.00;FS=6.767;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.547;QD=21.82;ReadPosRankSum=1.595;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1735,204,0 chrXIII 859500 . C T 5050.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=22.8854;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.06;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5050,549,0 chrXIII 859746 . A G 6799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=309;Dels=0.00;FS=3.022;HaplotypeScore=38.6411;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.251;QD=22.00;ReadPosRankSum=2.345;SB=-3.641e+03 GT:AD:DP:GQ:PL 1/1:2,303:309:99:6799,780,0 chrXIII 860181 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.4274;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.67;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4489,492,0 chrXIII 860328 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.10;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3802,417,0 chrXIII 860619 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.30;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2966,327,0 chrXIII 860678 . A T 1722 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=15.37;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1755,201,0 chrXIII 860679 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=15.74;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1843,207,0 chrXIII 861011 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.11;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2097,252,0 chrXIII 861125 . T A 1758 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.44;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1791,195,0 chrXIII 861184 . G T 918 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=13.70;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:951,105,0 chrXIII 861230 . G T 1291 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2169;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=15.94;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1324,153,0 chrXIII 861379 . G T 224 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=109.7267;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=1.75;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:30:257,30,0 chrXIII 861520 . T C 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=22.7785;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.476;QD=21.19;ReadPosRankSum=1.681;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4301,489,0 chrXIII 861765 . C A 3136 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.93;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3169,348,0 chrXIII 861780 . C A 2903 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.19;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2936,324,0 chrXIII 862056 . C A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.88;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3539,402,0 chrXIII 862065 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.420;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.431;QD=18.99;ReadPosRankSum=1.714;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3589,402,0 chrXIII 862092 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=208;Dels=0.00;FS=10.566;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.391;QD=18.47;ReadPosRankSum=2.966;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:3841,447,0 chrXIII 862539 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.1532;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.50;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3337,360,0 chrXIII 862695 . C T 4304.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=18.3225;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.74;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4304,474,0 chrXIII 863082 . C T 5264.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.12;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5264,582,0 chrXIII 863208 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.04;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3967,438,0 chrXIII 863229 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.2970;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.92;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4309,486,0 chrXIII 863412 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.4870;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.13;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4120,447,0 chrXIII 863507 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.27;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4360,465,0 chrXIII 863526 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.58;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3935,438,0 chrXIII 863539 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.32;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3671,426,0 chrXIII 863607 . T C 2917 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.93;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2950,333,0 chrXIII 863707 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.40;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2631,285,0 chrXIII 864272 . A G 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.292;QD=20.88;ReadPosRankSum=1.693;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1912,219,0 chrXIII 864551 . A G 2723 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2756,315,0 chrXIII 864888 . G T 4236.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.0481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4236,465,0 chrXIII 865393 . T C 1015 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=20.30;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1048,120,0 chrXIII 865402 . A G 955 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=18.02;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:988,114,0 chrXIII 865424 . G C 777 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=25.7133;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=14.13;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:810,93,0 chrXIII 866108 . T C 4316.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.3966;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.72;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4316,480,0 chrXIII 866477 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=162;Dels=0.00;FS=6.212;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.000;QD=22.39;ReadPosRankSum=2.419;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3627,411,0 chrXIII 866753 . T C 4586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=213;Dels=0.00;FS=9.108;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.823;QD=21.53;ReadPosRankSum=3.411;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:4,209:213:99:4586,528,0 chrXIII 867864 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.02;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4267,480,0 chrXIII 868389 . T C 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.559;QD=22.03;ReadPosRankSum=1.678;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2831,321,0 chrXIII 868542 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.11;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2205,246,0 chrXIII 868833 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.70;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3484,402,0 chrXIII 869058 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.49;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3823,429,0 chrXIII 869313 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.947;QD=21.89;ReadPosRankSum=1.705;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2857,330,0 chrXIII 869412 . T C 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=3.033;HaplotypeScore=5.9156;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.039;QD=20.24;ReadPosRankSum=2.372;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1956,219,0 chrXIII 869428 . A G 1902 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.47;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1935,222,0 chrXIII 870074 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2584,291,0 chrXIII 870328 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3306,363,0 chrXIII 870588 . C A 3094 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3127,342,0 chrXIII 871217 . C T 4220.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.93;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4220,468,0 chrXIII 871355 . A T 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=138;Dels=0.00;FS=2.752;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.131;QD=23.07;ReadPosRankSum=2.289;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3216,354,0 chrXIII 871633 . T C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=124;Dels=0.00;FS=14.754;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.240;QD=19.54;ReadPosRankSum=2.909;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:3,119:124:99:2456,279,0 chrXIII 871808 . C A 2516 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2549,288,0 chrXIII 872370 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.803;QD=20.26;ReadPosRankSum=1.715;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4174,474,0 chrXIII 872374 . A C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.23;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:3999,465,0 chrXIII 872837 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=6.700;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.939;QD=22.56;ReadPosRankSum=2.379;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3214,369,0 chrXIII 873141 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.8355;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4216,495,0 chrXIII 873246 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.758;QD=22.08;ReadPosRankSum=1.709;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3400,387,0 chrXIII 873817 . G A 6143.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=24.00;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6143,684,0 chrXIII 873885 . T G 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.647;DP=139;Dels=0.00;FS=62.790;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;MQRankSum=3.673;QD=14.34;ReadPosRankSum=-4.415;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:9,129:139:70:2026,70,0 chrXIII 873888 . C G 2234 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=2;QD=17.05;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2267,258,0 chrXIII 873896 . C G 1641.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.591;DP=126;Dels=0.00;FS=141.445;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=28.02;MQ0=7;MQRankSum=1.171;QD=13.02;ReadPosRankSum=-0.558;SB=-3.102e+01 GT:AD:DP:GQ:PL 0/1:20,106:126:26:1671,0,26 chrXIII 873897 . A G 1598.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;DP=124;Dels=0.00;FS=156.456;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=7;MQRankSum=1.288;QD=12.89;ReadPosRankSum=-0.334;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,104:124:51:1628,0,51 chrXIII 873906 . A G 1729.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DP=141;Dels=0.00;FS=130.879;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=7;MQRankSum=1.131;QD=12.26;ReadPosRankSum=0.622;SB=-3.502e+01 GT:AD:DP:GQ:PL 0/1:21,120:141:58:1759,0,58 chrXIII 873909 . A C 1766.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DP=143;Dels=0.00;FS=112.570;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=7;MQRankSum=1.686;QD=12.35;ReadPosRankSum=0.935;SB=-3.102e+01 GT:AD:DP:GQ:PL 0/1:21,122:143:38:1796,0,38 chrXIII 873914 . G C 1613.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.492;DP=144;Dels=0.00;FS=116.695;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=7;MQRankSum=1.311;QD=11.20;ReadPosRankSum=1.025;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:20,124:144:52:1643,0,52 chrXIII 873915 . A G 1741.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.264;DP=144;Dels=0.00;FS=116.695;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=7;MQRankSum=1.311;QD=12.09;ReadPosRankSum=1.135;SB=-1.800e+02 GT:AD:DP:GQ:PL 0/1:20,124:144:72:1771,0,72 chrXIII 873921 . G A 1731.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.704;DP=153;Dels=0.00;FS=105.300;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=7;MQRankSum=1.223;QD=11.31;ReadPosRankSum=1.628;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:20,133:153:55:1761,0,55 chrXIII 873922 . T C 1568.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.141;DP=154;Dels=0.00;FS=112.349;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=7;MQRankSum=1.297;QD=10.18;ReadPosRankSum=2.306;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:21,133:154:49:1598,0,49 chrXIII 873933 . A C 1644 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.293;DP=175;Dels=0.00;FS=58.433;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=7;MQRankSum=-1.443;QD=9.39;ReadPosRankSum=0.236;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:15,160:175:37:1677,37,0 chrXIII 873936 . A C 1722 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.825;DP=179;Dels=0.00;FS=42.918;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=7;MQRankSum=-2.867;QD=9.62;ReadPosRankSum=-0.785;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:13,166:179:85:1755,85,0 chrXIII 873945 . G A 1833 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=193;Dels=0.00;FS=32.208;HaplotypeScore=1.9265;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=6;MQRankSum=-2.324;QD=9.50;ReadPosRankSum=-0.699;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:11,182:193:99:1866,139,0 chrXIII 873956 . C G 2238 filter AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=6;QD=9.77;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:2271,267,0 chrXIII 873972 . G A 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.777;DP=256;Dels=0.00;FS=7.882;HaplotypeScore=13.2881;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=3;MQRankSum=-2.440;QD=10.97;ReadPosRankSum=1.320;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:5,250:256:99:2841,284,0 chrXIII 874035 . A G 3950.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.652;DP=304;Dels=0.00;FS=13.016;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=7;MQRankSum=0.801;QD=12.99;ReadPosRankSum=-1.307;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:10,294:304:99:3950,422,0 chrXIII 874047 . A T 3514.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=287;Dels=0.00;FS=40.006;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=10;MQRankSum=0.898;QD=12.24;ReadPosRankSum=1.664;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:18,269:287:99:3514,307,0 chrXIII 874052 . C T 3106 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=276;Dels=0.00;FS=46.057;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=10;MQRankSum=1.075;QD=11.25;ReadPosRankSum=1.024;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:18,257:276:99:3139,268,0 chrXIII 874065 . G A 2078 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=267;Dels=0.00;FS=78.429;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=12;MQRankSum=2.913;QD=7.78;ReadPosRankSum=-0.311;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:24,243:267:99:2111,104,0 chrXIII 874083 . G C 1125 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=208;Dels=0.00;FS=138.084;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=17;MQRankSum=2.172;QD=5.41;ReadPosRankSum=-1.190;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:29,178:208:35:1158,35,0 chrXIII 874085 . T C 1014.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.601;DP=207;Dels=0.00;FS=138.084;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=17;MQRankSum=2.888;QD=4.90;ReadPosRankSum=-1.364;SB=-1.315e+02 GT:AD:DP:GQ:PL 1/1:29,178:207:12:1047,12,0 chrXIII 874086 . C T 1059.05 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=207;Dels=0.00;FS=128.084;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=17;MQRankSum=3.269;QD=5.12;ReadPosRankSum=-2.002;SB=-1.371e+02 GT:AD:DP:GQ:PL 1/1:28,178:207:22:1092,22,0 chrXIII 874092 . G A 1235.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=232;Dels=0.00;FS=134.627;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=16;MQRankSum=3.194;QD=5.32;ReadPosRankSum=-3.249;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:26,206:232:25:1268,25,0 chrXIII 874096 . T C 1181 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.956;DP=241;Dels=0.00;FS=111.625;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=15;MQRankSum=3.340;QD=4.90;ReadPosRankSum=-1.939;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:28,212:241:34:1214,34,0 chrXIII 874104 . T G 1122.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.229;DP=236;Dels=0.00;FS=139.847;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=15;MQRankSum=2.619;QD=4.75;ReadPosRankSum=-3.127;SB=-7.903e+01 GT:AD:DP:GQ:PL 1/1:25,210:236:26:1155,26,0 chrXIII 874107 . A C 1000.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.756;DP=231;Dels=0.00;FS=159.379;HaplotypeScore=12.1842;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=14;MQRankSum=2.203;QD=4.33;ReadPosRankSum=-2.336;SB=-5.798e+01 GT:AD:DP:GQ:PL 1/1:25,205:230:9:1033,9,0 chrXIII 874110 . C G 949.33 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.381;DP=219;Dels=0.00;FS=157.101;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=12;MQRankSum=1.720;QD=4.33;ReadPosRankSum=-1.720;SB=-3.434e+01 GT:AD:DP:GQ:PL 1/1:24,195:219:14:982,14,0 chrXIII 874113 . G A 702.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DP=186;Dels=0.00;FS=158.256;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=27.86;MQ0=12;MQRankSum=3.055;QD=3.78;ReadPosRankSum=-0.989;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:23,163:186:11:732,0,11 chrXIII 874114 . C G 792.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DP=187;Dels=0.00;FS=150.409;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=12;MQRankSum=3.507;QD=4.24;ReadPosRankSum=-0.575;SB=-1.010e+01 GT:AD:DP:GQ:PL 0/1:23,164:187:14:822,0,14 chrXIII 874116 . G A 850.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;DP=191;Dels=0.00;FS=129.515;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=12;MQRankSum=2.105;QD=4.45;ReadPosRankSum=-0.550;SB=-7.712e+01 GT:AD:DP:GQ:PL 0/1:23,168:191:13:880,0,13 chrXIII 874125 . A C 929.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.289;DP=215;Dels=0.00;FS=86.077;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=12;MQRankSum=1.223;QD=4.32;ReadPosRankSum=0.560;SB=-4.586e+02 GT:AD:DP:GQ:PL 1/1:22,193:215:2:959,2,0 chrXIII 874128 . G A 1050.08 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.618;DP=219;Dels=0.00;FS=72.143;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=12;MQRankSum=2.333;QD=4.79;ReadPosRankSum=0.280;SB=-5.491e+02 GT:AD:DP:GQ:PL 1/1:21,197:219:20:1083,20,0 chrXIII 874140 . A C 1420 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.677;DP=226;Dels=0.00;FS=41.595;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=8;MQRankSum=3.864;QD=6.28;ReadPosRankSum=2.752;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:15,208:226:99:1453,103,0 chrXIII 874221 . C T 4973.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.6408;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=19.58;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,250:254:99:4973,543,0 chrXIII 874543 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.0211;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.61;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1759,192,0 chrXIII 874942 . T A 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.658;QD=22.31;ReadPosRankSum=1.705;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2911,318,0 chrXIII 875434 . T A 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=217;Dels=0.00;FS=3.026;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.764;QD=21.82;ReadPosRankSum=2.427;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4735,537,0 chrXIII 875463 . C G 4161.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.12;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4161,492,0 chrXIII 875718 . C T 5339.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.4935;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.49;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5339,591,0 chrXIII 876530 . G A 4791.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.7156;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.57;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4791,513,0 chrXIII 876747 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3747,417,0 chrXIII 876945 . G T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.88;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3707,408,0 chrXIII 877203 . G C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.68;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3288,390,0 chrXIII 877396 . A T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.5411;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.64;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3303,363,0 chrXIII 877404 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.065;HaplotypeScore=5.2987;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.411;QD=18.68;ReadPosRankSum=1.667;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3022,354,0 chrXIII 877521 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.36;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3014,336,0 chrXIII 877528 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.289;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.275;QD=18.94;ReadPosRankSum=1.708;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2780,318,0 chrXIII 877786 . A T 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=113;Dels=0.00;FS=5.773;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=2.081;QD=20.80;ReadPosRankSum=2.831;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2383,261,0 chrXIII 878043 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.37;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2471,270,0 chrXIII 878152 . C A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3290,357,0 chrXIII 878403 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.624;QD=21.62;ReadPosRankSum=1.705;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2801,318,0 chrXIII 878511 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3066,348,0 chrXIII 878622 . T C 1398 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1431,159,0 chrXIII 878778 . C T 669 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=16.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:41:78:702,78,0 chrXIII 878835 . G A 271 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=12.32;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:33:304,33,0 chrXIII 878863 . C T 554 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.31;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:66:587,66,0 chrXIII 879141 . A G 2746 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.97;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2779,327,0 chrXIII 879215 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.80;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2952,333,0 chrXIII 879414 . A G 4553.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4553,525,0 chrXIII 879489 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.0805;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.26;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4362,483,0 chrXIII 880030 . G A 6702.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=13.9094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.87;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6702,750,0 chrXIII 880089 . G A 6039.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.62;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6039,666,0 chrXIII 880179 . T A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.2120;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.66;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4246,462,0 chrXIII 880373 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.14;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2324,249,0 chrXIII 880393 . A T 1945 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.65;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1978,219,0 chrXIII 880430 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1877;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.32;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2552,273,0 chrXIII 880477 . T C 2631 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2664,303,0 chrXIII 880820 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2979,327,0 chrXIII 882052 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.2789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3189,357,0 chrXIII 882115 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0726;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.02;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3204,351,0 chrXIII 882751 . C T 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.059;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.363;QD=21.34;ReadPosRankSum=0.761;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3170,322,0 chrXIII 882943 . T C 3624.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.70;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3624,408,0 chrXIII 882964 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7702;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.98;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3999,441,0 chrXIII 883123 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.965;QD=22.99;ReadPosRankSum=1.707;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3251,372,0 chrXIII 883606 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6305;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3419,393,0 chrXIII 883726 . C T 4994.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.24;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4994,546,0 chrXIII 884525 . C T 5072.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5072,558,0 chrXIII 885067 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3317,363,0 chrXIII 885307 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.5353;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3592,396,0 chrXIII 885997 . T C 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=228;Dels=0.00;FS=4.389;HaplotypeScore=19.2351;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.380;QD=21.95;ReadPosRankSum=1.671;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5005,570,0 chrXIII 886291 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=164;Dels=0.00;FS=7.814;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.577;QD=21.67;ReadPosRankSum=2.360;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3554,402,0 chrXIII 887053 . T C 2930 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.21;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2963,336,0 chrXIII 887158 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4136,447,0 chrXIII 887633 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4372,492,0 chrXIII 887824 . T A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.93;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4762,531,0 chrXIII 887857 . A G 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=217;Dels=0.00;FS=8.070;HaplotypeScore=17.4476;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.386;QD=21.48;ReadPosRankSum=2.427;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4662,549,0 chrXIII 887934 . A G 5763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=252;Dels=0.00;FS=8.108;HaplotypeScore=9.8379;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.699;QD=22.87;ReadPosRankSum=2.410;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:5763,660,0 chrXIII 888376 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.8503;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.96;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4765,522,0 chrXIII 888693 . C G 2107 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2140,246,0 chrXIII 889102 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3814;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.82;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3862,435,0 chrXIII 889183 . A G 4991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=218;Dels=0.00;FS=9.655;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.883;QD=22.89;ReadPosRankSum=2.949;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:3,212:218:99:4991,567,0 chrXIII 889570 . A T 4236.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4236,462,0 chrXIII 889638 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.5455;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3804,408,0 chrXIII 889717 . G C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.19;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3243,369,0 chrXIII 890524 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.7327;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.13;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3562,411,0 chrXIII 890947 . C T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4158,450,0 chrXIII 891319 . T C 5522.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.74;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5522,627,0 chrXIII 892535 . T C 977 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.57;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1010,117,0 chrXIII 892536 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=14.24;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1030,114,0 chrXIII 893651 . A G 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.611;DP=204;Dels=0.00;FS=7.959;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.630;QD=20.46;ReadPosRankSum=3.758;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:5,198:204:99:4174,468,0 chrXIII 893659 . G T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.61;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4084,459,0 chrXIII 893720 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2017;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.482;QD=20.87;ReadPosRankSum=0.438;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3464,393,0 chrXIII 894039 . A T 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=97;Dels=0.00;FS=7.330;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.114;QD=23.51;ReadPosRankSum=2.374;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2313,252,0 chrXIII 894275 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3476,387,0 chrXIII 895056 . T G 2899 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2932,333,0 chrXIII 895643 . A G 4398.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.91;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4398,498,0 chrXIII 895914 . G A 6210.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.3466;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.70;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6210,681,0 chrXIII 895956 . C T 5245.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.71;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5245,582,0 chrXIII 896064 . G C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.3793;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.77;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3361,384,0 chrXIII 896227 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.2535;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.76;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3873,444,0 chrXIII 896476 . T G 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=156;Dels=0.00;FS=6.939;HaplotypeScore=14.4658;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.706;QD=18.26;ReadPosRankSum=2.418;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2882,336,0 chrXIII 896732 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.19;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3306,384,0 chrXIII 896761 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.65;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3045,339,0 chrXIII 896823 . C G 2736 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.8048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2769,312,0 chrXIII 896918 . G T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=16.3678;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.03;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3613,402,0 chrXIII 897013 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.27;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3053,336,0 chrXIII 897124 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.48;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3287,363,0 chrXIII 897430 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.07;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4039,447,0 chrXIII 897605 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.7697;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.41;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3790,435,0 chrXIII 897645 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=164;Dels=0.00;FS=2.984;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.966;QD=22.21;ReadPosRankSum=2.420;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3643,420,0 chrXIII 897755 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=169;Dels=0.00;FS=2.565;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-0.601;QD=20.68;ReadPosRankSum=2.959;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3495,393,0 chrXIII 897761 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=21.61;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3349,366,0 chrXIII 897795 . C G 2554 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.64;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2587,291,0 chrXIII 897815 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.90;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2206,243,0 chrXIII 897920 . G A 1782 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.80;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1815,204,0 chrXIII 897927 . T C 1690 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.20;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1723,198,0 chrXIII 897930 . G T 1660 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.86;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1693,189,0 chrXIII 897951 . C A 1553 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.71;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1586,177,0 chrXIII 898029 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.90;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1969,213,0 chrXIII 898146 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=24.92;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1553,168,0 chrXIII 898277 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.99;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2237,252,0 chrXIII 898408 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.71;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3480,381,0 chrXIII 898425 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.37;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3381,381,0 chrXIII 898462 . G T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6874;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.26;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3626,399,0 chrXIII 898537 . A C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=3.371;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.181;QD=21.64;ReadPosRankSum=1.711;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3527,405,0 chrXIII 898606 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.051;QD=21.83;ReadPosRankSum=1.715;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4454,504,0 chrXIII 898692 . A G 5411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=237;Dels=0.00;FS=7.697;HaplotypeScore=17.5267;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.016;QD=22.83;ReadPosRankSum=2.387;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5411,615,0 chrXIII 898776 . A G 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=3.892;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.078;QD=22.34;ReadPosRankSum=1.644;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4423,504,0 chrXIII 898837 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=168;Dels=0.00;FS=2.817;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.446;QD=20.89;ReadPosRankSum=2.406;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3510,405,0 chrXIII 899002 . C A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.03;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3899,438,0 chrXIII 899239 . T C 3179 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.39;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3212,363,0 chrXIII 899812 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=6.306;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.034;QD=21.87;ReadPosRankSum=2.405;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2417,285,0 chrXIII 899844 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.23;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2581,282,0 chrXIII 900142 . A G 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.429;QD=21.98;ReadPosRankSum=1.698;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2253,255,0 chrXIII 901050 . T C 2863 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.5665;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.09;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2896,327,0 chrXIII 901350 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.54;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2928,318,0 chrXIII 901451 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.09;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2330,264,0 chrXIII 901535 . A T 2570 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.95;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2603,282,0 chrXIII 901903 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.847;QD=23.18;ReadPosRankSum=1.694;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4172,474,0 chrXIII 902029 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=165;Dels=0.00;FS=9.074;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.160;QD=22.47;ReadPosRankSum=3.406;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:99:3708,411,0 chrXIII 902587 . C A 2627 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.10;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2660,300,0 chrXIII 902673 . T C 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.465;QD=21.78;ReadPosRankSum=2.349;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,96:100:99:2211,258,0 chrXIII 902696 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.70;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2615,294,0 chrXIII 902762 . T G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=142;Dels=0.00;FS=9.219;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.067;QD=21.95;ReadPosRankSum=3.397;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:4,138:142:99:3150,357,0 chrXIII 903664 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.01;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3314,360,0 chrXIII 903826 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=9.705;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.350;QD=19.75;ReadPosRankSum=2.405;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2186,252,0 chrXIII 904006 . C T 2195 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.12;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2228,243,0 chrXIII 904067 . G C 2238 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.65;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2271,264,0 chrXIII 904069 . A C 2319 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.70;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2352,270,0 chrXIII 904131 . G A 2381 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.20;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2414,276,0 chrXIII 904245 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.49;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3194,360,0 chrXIII 904263 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.64;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3412,372,0 chrXIII 904370 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.87;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4593,513,0 chrXIII 904506 . T C 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=232;Dels=0.00;FS=3.163;HaplotypeScore=14.4912;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.791;QD=22.11;ReadPosRankSum=1.613;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5130,588,0 chrXIII 904744 . A C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=120;Dels=0.00;FS=8.414;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.314;QD=22.19;ReadPosRankSum=3.384;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2696,309,0 chrXIII 904791 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.26;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2556,279,0 chrXIII 904920 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.52;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2060,225,0 chrXIII 905085 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2183,237,0 chrXIII 905531 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8995;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.42;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3405,384,0 chrXIII 905544 . T C 3036 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8909;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.08;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3069,348,0 chrXIII 905893 . A T 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.230;QD=24.78;ReadPosRankSum=1.708;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3593,390,0 chrXIII 905943 . A G 2361 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.89;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2394,273,0 chrXIII 905950 . A T 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.990;QD=20.85;ReadPosRankSum=1.670;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2368,267,0 chrXIII 906187 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.60;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2293,249,0 chrXIII 906242 . G C 3053 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.61;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,130:135:99:3086,354,0 chrXIII 906340 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.02;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2911,324,0 chrXIII 906418 . T G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.0736;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.669;QD=22.32;ReadPosRankSum=1.711;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3683,423,0 chrXIII 906551 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.03;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2662,294,0 chrXIII 906678 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.75;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3524,390,0 chrXIII 906771 . A G 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=128;Dels=0.00;FS=6.475;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.336;QD=20.38;ReadPosRankSum=2.392;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2642,306,0 chrXIII 906784 . T C 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=140;Dels=0.00;FS=3.038;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.904;QD=18.60;ReadPosRankSum=2.379;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2637,303,0 chrXIII 906931 . T C 2756 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.59;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2789,312,0 chrXIII 907319 . T A 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;MQRankSum=0.477;QD=25.30;ReadPosRankSum=1.707;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3492,390,0 chrXIII 907438 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.29;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3366,396,0 chrXIII 907585 . T C 5378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.649;DP=271;Dels=0.00;FS=12.031;HaplotypeScore=19.5018;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.176;QD=19.85;ReadPosRankSum=3.793;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:5,266:271:99:5378,615,0 chrXIII 907700 . T C 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=224;Dels=0.00;FS=2.645;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=1.561;QD=21.62;ReadPosRankSum=2.405;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:4843,546,0 chrXIII 907728 . T C 5022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.8668;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.352;QD=20.84;ReadPosRankSum=1.675;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5022,564,0 chrXIII 907830 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;DP=227;Dels=0.00;FS=3.585;HaplotypeScore=16.6912;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.563;QD=20.82;ReadPosRankSum=-1.701;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4726,496,0 chrXIII 907900 . A C 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.165;DP=232;Dels=0.00;FS=2.752;HaplotypeScore=16.4481;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=1.100;QD=19.75;ReadPosRankSum=1.823;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:4583,507,0 chrXIII 907951 . T A 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=221;Dels=0.00;FS=10.570;HaplotypeScore=11.0530;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=1.235;QD=19.49;ReadPosRankSum=2.237;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:4,217:221:99:4307,452,0 chrXIII 907958 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=210;Dels=0.00;FS=2.565;HaplotypeScore=10.8922;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;MQRankSum=-1.235;QD=18.53;ReadPosRankSum=2.938;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:3892,447,0 chrXIII 907995 . C G 3210.99 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=18.14;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3244,381,0 chrXIII 908003 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=18.66;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3452,390,0 chrXIII 908047 . T C 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;MQRankSum=0.328;QD=22.54;ReadPosRankSum=1.714;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4282,486,0 chrXIII 908105 . T C 4592.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.1843;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=22.62;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:4592,528,0 chrXIII 908138 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=20.38;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3301,366,0 chrXIII 908167 . G A 227.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.212;DP=137;Dels=0.00;FS=73.371;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=31.91;MQ0=0;MQRankSum=-0.241;QD=1.66;ReadPosRankSum=2.813;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,53:137:99:257,0,1328 chrXIII 908177 . A G 728.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.132;DP=130;Dels=0.00;FS=67.237;HaplotypeScore=4.2061;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=-1.231;QD=5.60;ReadPosRankSum=-4.222;SB=-4.540e+02 GT:AD:DP:GQ:PL 0/1:75,55:130:99:758,0,590 chrXIII 908179 . T G 531.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;DP=125;Dels=0.00;FS=42.926;HaplotypeScore=3.4174;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=0;MQRankSum=-1.468;QD=4.25;ReadPosRankSum=-4.125;SB=-3.310e+02 GT:AD:DP:GQ:PL 0/1:77,47:125:99:561,0,574 chrXIII 908185 . A G 1015 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=8.996;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;MQRankSum=-0.649;QD=9.40;ReadPosRankSum=2.267;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1048,120,0 chrXIII 908192 . T C 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.948;DP=98;Dels=0.00;FS=2.354;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=0;MQRankSum=0.476;QD=0.59;ReadPosRankSum=-6.338;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,21:98:88:88,0,705 chrXIII 908196 . G C 814 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=8.95;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,90:91:99:847,102,0 chrXIII 908198 . G T 666.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.031;DP=92;Dels=0.00;FS=2.346;HaplotypeScore=3.9135;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=0;MQRankSum=1.324;QD=7.24;ReadPosRankSum=6.165;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:16,76:92:45:696,0,45 chrXIII 908203 . G T 879 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.106;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8869;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;MQRankSum=1.440;QD=10.59;ReadPosRankSum=1.607;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,82:83:99:912,99,0 chrXIII 908206 . T C 804 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=86;Dels=0.00;FS=7.051;HaplotypeScore=8.5725;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=2.330;QD=9.35;ReadPosRankSum=2.589;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:3,83:86:76:837,76,0 chrXIII 908215 . G A 744 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.406;DP=86;Dels=0.00;FS=9.100;HaplotypeScore=3.5875;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;MQRankSum=3.384;QD=8.65;ReadPosRankSum=4.759;SB=-3.374e+01 GT:AD:DP:GQ:PL 1/1:11,74:86:48:777,48,0 chrXIII 908218 . C T 867 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.4685;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=9.74;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:900,99,0 chrXIII 908221 . G A 673.05 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.143;DP=88;Dels=0.00;FS=16.630;HaplotypeScore=12.4516;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;MQRankSum=1.395;QD=7.65;ReadPosRankSum=4.703;SB=2.95 GT:AD:DP:GQ:PL 1/1:17,71:88:22:706,22,0 chrXIII 908223 . A C 609.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;DP=93;Dels=0.00;FS=13.893;HaplotypeScore=12.4521;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=0;MQRankSum=2.971;QD=6.55;ReadPosRankSum=6.385;SB=-6.541e-03 GT:AD:DP:GQ:PL 0/1:31,62:93:50:639,0,50 chrXIII 908226 . C T 658.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.664;DP=106;Dels=0.00;FS=19.020;HaplotypeScore=8.8663;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=0;MQRankSum=2.941;QD=6.21;ReadPosRankSum=3.706;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,72:106:99:688,0,132 chrXIII 908232 . T C 148.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.768;DP=111;Dels=0.00;FS=21.100;HaplotypeScore=43.1132;MLEAC=1;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=-0.637;QD=1.33;ReadPosRankSum=-1.275;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:72,39:111:99:178,0,628 chrXIII 908238 . C T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.757;DP=110;Dels=0.00;FS=22.087;HaplotypeScore=20.3160;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=0;MQRankSum=-0.472;QD=0.11;ReadPosRankSum=3.050;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:89,21:110:42:42,0,721 chrXIII 908246 . G T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.398;DP=110;Dels=0.00;FS=21.037;HaplotypeScore=2.5802;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=0;MQRankSum=-0.654;QD=0.10;ReadPosRankSum=5.870;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:88,22:110:41:41,0,712 chrXIII 908251 . G A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;DP=108;Dels=0.00;FS=14.387;HaplotypeScore=86.1926;MLEAC=1;MLEAF=0.500;MQ=27.53;MQ0=0;MQRankSum=0.528;QD=0.10;ReadPosRankSum=6.008;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:87,21:108:41:41,0,705 chrXIII 908257 . A G 181.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DP=105;Dels=0.00;FS=5.009;HaplotypeScore=43.0569;MLEAC=1;MLEAF=0.500;MQ=27.49;MQ0=0;MQRankSum=-0.825;QD=1.72;ReadPosRankSum=2.129;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:72,33:105:99:211,0,487 chrXIII 908259 . A C 383.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.954;DP=94;Dels=0.00;FS=2.850;HaplotypeScore=43.0569;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=0;MQRankSum=2.003;QD=4.07;ReadPosRankSum=-0.689;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:34,60:94:99:413,0,225 chrXIII 908262 . C T 313.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;DP=87;Dels=0.00;FS=1.295;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=0;MQRankSum=1.181;QD=3.60;ReadPosRankSum=-0.471;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:33,53:87:99:343,0,236 chrXIII 908270 . T G 564 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=0;QD=7.42;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:69:597,69,0 chrXIII 908274 . C T 227.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.730;DP=74;Dels=0.00;FS=1.285;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=0;MQRankSum=0.446;QD=3.07;ReadPosRankSum=2.044;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:41,33:74:99:257,0,209 chrXIII 908275 . G A,T 492.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.99;MQ0=0;QD=6.65;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/2:0,41,33:74:99:552,293,260,259,0,223 chrXIII 908278 . T C 220.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;DP=75;Dels=0.00;FS=1.302;HaplotypeScore=1.9053;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=0;MQRankSum=0.977;QD=2.93;ReadPosRankSum=3.389;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:42,33:75:99:250,0,207 chrXIII 908282 . G T 233.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.601;DP=75;Dels=0.00;FS=1.302;HaplotypeScore=1.9053;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=0;MQRankSum=1.948;QD=3.11;ReadPosRankSum=3.015;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:42,33:75:99:263,0,204 chrXIII 908285 . G A 181.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.334;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6362;MLEAC=1;MLEAF=0.500;MQ=27.12;MQ0=0;MQRankSum=1.873;QD=2.45;ReadPosRankSum=-2.100;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:35,39:74:99:211,0,261 chrXIII 908286 . T C 217.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220;DP=74;Dels=0.00;FS=1.285;HaplotypeScore=6.6362;MLEAC=1;MLEAF=0.500;MQ=27.12;MQ0=0;MQRankSum=1.653;QD=2.93;ReadPosRankSum=2.827;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:41,33:74:99:247,0,240 chrXIII 908287 . G A,T 455.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.183;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.12;MQ0=0;MQRankSum=1.317;QD=6.15;ReadPosRankSum=2.217;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/2:2,33,39:74:99:515,221,207,274,0,264 chrXIII 908293 . A G 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=1;MLEAF=0.500;MQ=27.12;MQ0=0;MQRankSum=0.092;QD=2.07;ReadPosRankSum=-1.714;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:36,38:74:99:183,0,279 chrXIII 908295 . A C 246.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.003;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8775;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=0;MQRankSum=1.055;QD=3.42;ReadPosRankSum=2.487;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:38,34:72:99:276,0,184 chrXIII 908298 . C T 264.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.063;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.8963;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=0;MQRankSum=0.366;QD=3.77;ReadPosRankSum=2.553;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:37,33:70:99:294,0,159 chrXIII 908300 . C T 114.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.309;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.8963;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=0;MQRankSum=0.513;QD=1.70;ReadPosRankSum=-2.129;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:33,34:67:99:144,0,283 chrXIII 908306 . T G 258.20 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;DP=60;Dels=0.00;FS=4.666;HaplotypeScore=14.7944;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=0;MQRankSum=-0.268;QD=4.30;ReadPosRankSum=2.000;SB=-6.520e+01 GT:AD:DP:GQ:PL 0/1:10,32:60:29:287,0,29 chrXIII 908318 . T G 74.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DP=22;Dels=0.00;FS=1.897;HaplotypeScore=4.9604;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=0.297;QD=3.36;ReadPosRankSum=1.747;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:10,12:22:51:104,0,51 chrXIII 908319 . C T 78.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;DP=21;Dels=0.00;FS=1.808;HaplotypeScore=4.9604;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=0;MQRankSum=0.817;QD=3.71;ReadPosRankSum=1.457;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:9,12:21:44:108,0,44 chrXIII 908321 . G A 85.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.169;DP=19;Dels=0.00;FS=6.107;HaplotypeScore=2.9776;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=0;MQRankSum=0.380;QD=4.47;ReadPosRankSum=0.972;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:7,12:19:26:115,0,26 chrXIII 908323 . G T 79.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;DP=18;Dels=0.00;FS=5.842;HaplotypeScore=2.7697;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=0;MQRankSum=0.264;QD=4.39;ReadPosRankSum=1.107;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:5,12:18:28:109,0,28 chrXIII 908329 . C A,G 47.53 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.63;MQ0=0;QD=3.17;SB=-4.553e+01 GT:AD:DP:GQ:PL 1/2:0,5,10:15:29:105,67,61,38,0,29 chrXIII 908333 . A G 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=0.742;QD=6.28;ReadPosRankSum=0.742;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:9:76,9,0 chrXIII 908334 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=7.66;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:78,9,0 chrXIII 908338 . G A 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=7.33;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:76,9,0 chrXIII 908341 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=6.42;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:77,9,0 chrXIII 908350 . T C 204 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=16.5014;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=1;MQRankSum=1.670;QD=3.46;ReadPosRankSum=0.495;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:30:237,30,0 chrXIII 908356 . A G 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290;DP=70;Dels=0.00;FS=7.138;HaplotypeScore=18.4775;MLEAC=1;MLEAF=0.500;MQ=26.64;MQ0=1;MQRankSum=-3.096;QD=1.14;ReadPosRankSum=3.021;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,15:70:99:110,0,220 chrXIII 908359 . A G 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.546;DP=71;Dels=0.00;FS=4.646;HaplotypeScore=20.4641;MLEAC=1;MLEAF=0.500;MQ=26.68;MQ0=1;MQRankSum=-2.768;QD=1.13;ReadPosRankSum=3.003;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,15:71:99:110,0,218 chrXIII 908367 . A C 129.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=19.5161;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=1;MQRankSum=3.760;QD=1.79;ReadPosRankSum=-0.654;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:19,53:72:99:159,0,165 chrXIII 908370 . C T 140.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.386;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.6862;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=1;MQRankSum=3.390;QD=1.94;ReadPosRankSum=-0.747;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:19,53:72:99:170,0,161 chrXIII 908403 . A C 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;DP=68;Dels=0.00;FS=44.506;HaplotypeScore=32.4675;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=2;MQRankSum=3.593;QD=2.04;ReadPosRankSum=-0.812;SB=-6.516e-03 GT:AD:DP:GQ:PL 0/1:23,45:68:99:169,0,115 chrXIII 908406 . C T 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.039;DP=67;Dels=0.00;FS=46.028;HaplotypeScore=20.5824;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=2;MQRankSum=3.987;QD=2.18;ReadPosRankSum=-1.002;SB=-6.512e-03 GT:AD:DP:GQ:PL 0/1:22,45:67:99:176,0,115 chrXIII 908414 . T G 158.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.291;DP=68;Dels=0.00;FS=28.041;HaplotypeScore=26.3143;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=2;MQRankSum=5.467;QD=2.32;ReadPosRankSum=-1.586;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:21,47:68:66:188,0,66 chrXIII 908426 . T G 136.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;DP=38;Dels=0.00;FS=15.252;HaplotypeScore=17.9527;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=2;MQRankSum=3.391;QD=3.58;ReadPosRankSum=1.671;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:18,20:38:69:166,0,69 chrXIII 908427 . C T 144.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DP=38;Dels=0.00;FS=15.252;HaplotypeScore=17.9527;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=2;MQRankSum=4.441;QD=3.79;ReadPosRankSum=1.576;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:17,20:38:69:174,0,69 chrXIII 908429 . G A 152.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.983;DP=36;Dels=0.00;FS=15.627;HaplotypeScore=16.3319;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=1;MQRankSum=2.917;QD=4.22;ReadPosRankSum=1.483;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:16,20:36:69:182,0,69 chrXIII 908431 . G A,T 224.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.75;MQ0=1;QD=6.79;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/2:0,13,20:33:69:284,190,175,93,0,69 chrXIII 908437 . C G 148.06 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=1;QD=5.11;SB=-1.421e+02 GT:AD:DP:GQ:PL 1/1:0,22:29:21:181,21,0 chrXIII 908441 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.416;DP=17;Dels=0.00;FS=33.858;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=0;MQRankSum=2.069;QD=1.22;ReadPosRankSum=3.416;SB=-2.771e+01 GT:AD:DP:GQ:PL 1/1:9,8:17:6:52,6,0 chrXIII 908442 . T C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=0.289;QD=1.73;ReadPosRankSum=2.637;SB=-2.871e+01 GT:AD:DP:GQ:PL 1/1:4,8:12:6:52,6,0 chrXIII 908458 . T C 146.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=2;MQRankSum=-0.769;QD=2.06;ReadPosRankSum=4.678;SB=-1.739e-02 GT:AD:DP:GQ:PL 0/1:30,41:71:23:176,0,23 chrXIII 908464 . A G 258.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.011;DP=85;Dels=0.00;FS=8.193;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=2;MQRankSum=-2.154;QD=3.04;ReadPosRankSum=2.722;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:33,52:85:51:288,0,51 chrXIII 908467 . A G 261.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;DP=93;Dels=0.00;FS=11.121;HaplotypeScore=3.3594;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=2;MQRankSum=-2.520;QD=2.81;ReadPosRankSum=2.738;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:36,55:93:69:291,0,69 chrXIII 908473 . G A 667 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=2;QD=5.70;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:81:700,81,0 chrXIII 908516 . C T 333.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.707;DP=203;Dels=0.00;FS=14.693;HaplotypeScore=37.2697;MLEAC=1;MLEAF=0.500;MQ=30.57;MQ0=2;MQRankSum=-0.072;QD=1.64;ReadPosRankSum=1.702;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:103,100:203:99:363,0,784 chrXIII 908518 . A G 245.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.318;DP=202;Dels=0.00;FS=34.142;HaplotypeScore=48.1196;MLEAC=1;MLEAF=0.500;MQ=30.58;MQ0=2;MQRankSum=0.370;QD=1.21;ReadPosRankSum=1.884;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,96:202:99:275,0,854 chrXIII 908522 . T A 352.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.393;DP=203;Dels=0.00;FS=21.801;HaplotypeScore=45.2467;MLEAC=1;MLEAF=0.500;MQ=30.71;MQ0=2;MQRankSum=-0.552;QD=1.73;ReadPosRankSum=0.440;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:87,105:203:99:382,0,747 chrXIII 908530 . T C 373.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DP=202;Dels=0.00;FS=21.917;HaplotypeScore=48.1318;MLEAC=1;MLEAF=0.500;MQ=30.71;MQ0=2;MQRankSum=0.929;QD=1.85;ReadPosRankSum=0.782;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:91,111:202:99:403,0,776 chrXIII 908539 . G A 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=183;Dels=0.00;FS=5.423;HaplotypeScore=42.3450;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=2;MQRankSum=1.672;QD=7.11;ReadPosRankSum=-2.636;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:16,167:183:99:1334,101,0 chrXIII 908550 . C T 397.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.151;DP=155;Dels=0.00;FS=46.360;HaplotypeScore=42.5715;MLEAC=1;MLEAF=0.500;MQ=31.30;MQ0=0;MQRankSum=1.136;QD=2.56;ReadPosRankSum=0.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,88:155:99:427,0,534 chrXIII 908551 . T C 380.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;DP=153;Dels=0.00;FS=47.387;HaplotypeScore=42.5715;MLEAC=1;MLEAF=0.500;MQ=31.39;MQ0=0;MQRankSum=-0.264;QD=2.48;ReadPosRankSum=0.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,88:153:99:410,0,525 chrXIII 908556 . C T 346.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;DP=139;Dels=0.00;FS=34.012;HaplotypeScore=46.2762;MLEAC=1;MLEAF=0.500;MQ=31.49;MQ0=0;MQRankSum=1.071;QD=2.49;ReadPosRankSum=-1.705;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:98,39:139:99:376,0,469 chrXIII 908558 . T G 945 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.437;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=48.5649;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;MQRankSum=-0.551;QD=7.16;ReadPosRankSum=0.175;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,128:132:99:978,111,0 chrXIII 908563 . A G 730 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.116;DP=118;Dels=0.03;FS=0.000;HaplotypeScore=50.6162;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;MQRankSum=0.008;QD=6.19;ReadPosRankSum=-0.208;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:4,110:114:90:763,90,0 chrXIII 908570 . T G 109.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.709;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=41.8481;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=0.204;QD=1.10;ReadPosRankSum=-1.157;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:70,29:99:99:139,0,306 chrXIII 908571 . C T 113.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.105;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=54.4384;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=-0.241;QD=1.14;ReadPosRankSum=-1.308;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:69,29:99:99:143,0,306 chrXIII 908578 . T C 176.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;DP=83;Dels=0.00;FS=7.829;HaplotypeScore=45.2020;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=0;MQRankSum=1.329;QD=2.12;ReadPosRankSum=3.718;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,49:83:99:206,0,159 chrXIII 908581 . A G 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.729;DP=75;Dels=0.00;FS=11.210;HaplotypeScore=43.8889;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=0.655;QD=2.93;ReadPosRankSum=3.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,54:75:87:250,0,87 chrXIII 908594 . T G 214.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DP=44;Dels=0.00;FS=13.118;HaplotypeScore=8.6975;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=0.333;QD=4.86;ReadPosRankSum=2.149;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:2,41:44:27:247,27,0 chrXIII 908606 . T G 146.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.628;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=-0.057;QD=6.64;ReadPosRankSum=2.227;SB=0.061 GT:AD:DP:GQ:PL 1/1:2,20:22:21:179,21,0 chrXIII 908607 . C T 156.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.286;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=1.656;QD=7.09;ReadPosRankSum=2.227;SB=0.095 GT:AD:DP:GQ:PL 1/1:2,20:22:21:189,21,0 chrXIII 908650 . T C 285 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;MQRankSum=-0.866;QD=8.91;ReadPosRankSum=1.516;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:42:318,42,0 chrXIII 908653 . A G 393 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=10.62;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:57:426,57,0 chrXIII 908658 . T C 506 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=7.301;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=-1.058;QD=10.54;ReadPosRankSum=2.244;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:69:539,69,0 chrXIII 908660 . T C 582 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.024;DP=58;Dels=0.00;FS=7.412;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;MQRankSum=-2.365;QD=10.03;ReadPosRankSum=2.195;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:78:615,78,0 chrXIII 908678 . C G 1590 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=15.59;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1623,195,0 chrXIII 908906 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.797;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.841;QD=18.47;ReadPosRankSum=1.653;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3266,360,0 chrXIII 908913 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.62;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3481,378,0 chrXIII 909387 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.050;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.659;QD=19.12;ReadPosRankSum=1.687;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2997,342,0 chrXIII 909413 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.42;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3120,348,0 chrXIII 909483 . G C 3988.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3988,453,0 chrXIII 909552 . C T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=22.2725;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.49;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:3826,414,0 chrXIII 909664 . T C 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.187;QD=22.44;ReadPosRankSum=1.684;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4847,549,0 chrXIII 909772 . A C 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.239;DP=235;Dels=0.00;FS=18.420;HaplotypeScore=19.8610;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.077;QD=19.91;ReadPosRankSum=4.313;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:7,226:235:99:4678,521,0 chrXIII 909807 . G C 5203.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=14.8933;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.25;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:5203,597,0 chrXIII 909879 . A G 5350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=255;Dels=0.00;FS=10.109;HaplotypeScore=23.1119;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.226;QD=20.98;ReadPosRankSum=2.925;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:3,250:255:99:5350,609,0 chrXIII 909953 . C G 5975.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.89;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,257:261:99:5975,707,0 chrXIII 910045 . C G 4099.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.8493;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.29;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4099,471,0 chrXIII 910304 . C T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.48;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4357,477,0 chrXIII 910348 . A C 1239.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.456;DP=379;Dels=0.00;FS=2.230;HaplotypeScore=20.2321;MLEAC=1;MLEAF=0.500;MQ=48.29;MQ0=0;MQRankSum=-0.470;QD=3.27;ReadPosRankSum=2.266;SB=-1.299e+03 GT:AD:DP:GQ:PL 0/1:204,175:379:99:1269,0,3299 chrXIII 910352 . G A 2996.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.411;DP=376;Dels=0.00;FS=0.800;HaplotypeScore=14.8208;MLEAC=1;MLEAF=0.500;MQ=48.18;MQ0=0;MQRankSum=-0.419;QD=7.97;ReadPosRankSum=-2.364;SB=-1.551e+03 GT:AD:DP:GQ:PL 0/1:181,192:376:99:3026,0,1518 chrXIII 910375 . G A 1732.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.374;DP=388;Dels=0.00;FS=1.281;HaplotypeScore=18.5153;MLEAC=1;MLEAF=0.500;MQ=48.58;MQ0=0;MQRankSum=-3.039;QD=4.46;ReadPosRankSum=1.782;SB=-9.220e+02 GT:AD:DP:GQ:PL 0/1:244,143:388:99:1762,0,2653 chrXIII 910380 . C T 1452.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.271;DP=382;Dels=0.00;FS=1.812;HaplotypeScore=18.1404;MLEAC=1;MLEAF=0.500;MQ=49.27;MQ0=0;MQRankSum=-4.190;QD=3.80;ReadPosRankSum=1.453;SB=-7.750e+02 GT:AD:DP:GQ:PL 0/1:248,134:382:99:1482,0,3236 chrXIII 910543 . T C 6084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=282;Dels=0.00;FS=3.553;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=0.265;QD=21.57;ReadPosRankSum=1.707;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:1,280:282:99:6084,711,0 chrXIII 910574 . A G 5917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=268;Dels=0.00;FS=8.983;HaplotypeScore=12.5733;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=2.259;QD=22.08;ReadPosRankSum=3.351;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:4,264:268:99:5917,669,0 chrXIII 910733 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.55;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4202,456,0 chrXIII 910814 . G A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=11.3198;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=23.32;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4267,480,0 chrXIII 910852 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=179;Dels=0.00;FS=18.670;HaplotypeScore=13.0049;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;MQRankSum=0.301;QD=23.46;ReadPosRankSum=2.756;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:4199,471,0 chrXIII 910955 . A T 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=122;Dels=0.02;FS=4.260;HaplotypeScore=18.2931;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;MQRankSum=-1.241;QD=23.39;ReadPosRankSum=1.674;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2887,318,0 chrXIII 911183 . T C 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=200;Dels=0.00;FS=2.979;HaplotypeScore=18.0845;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.178;QD=21.82;ReadPosRankSum=2.400;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4364,498,0 chrXIII 911382 . A T 5761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=255;Dels=0.00;FS=7.899;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.072;QD=22.59;ReadPosRankSum=2.305;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5761,651,0 chrXIII 911502 . T C 6028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=278;Dels=0.00;FS=3.025;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.387;QD=21.68;ReadPosRankSum=2.423;SB=-3.473e+03 GT:AD:DP:GQ:PL 1/1:2,274:278:99:6028,681,0 chrXIII 912021 . T C 5297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=285;Dels=0.00;FS=9.330;HaplotypeScore=20.0436;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.767;QD=18.59;ReadPosRankSum=2.432;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:2,281:285:99:5297,597,0 chrXIII 912213 . C G 4190.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.24;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4190,480,0 chrXIII 912216 . T G 4246.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.81;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4246,480,0 chrXIII 912369 . A G 4602.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.02;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4602,513,0 chrXIII 912463 . C G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.26;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3294,375,0 chrXIII 912584 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2650,300,0 chrXIII 912804 . A G 2670 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2703,306,0 chrXIII 912879 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.21;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3608,390,0 chrXIII 913429 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.26;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3326,372,0 chrXIII 913447 . A G 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.651;QD=20.52;ReadPosRankSum=1.708;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2927,336,0 chrXIII 913525 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=203;Dels=0.00;FS=10.699;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=1.057;QD=19.46;ReadPosRankSum=2.401;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,199:203:99:3951,450,0 chrXIII 913531 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=0.218;QD=19.43;ReadPosRankSum=2.426;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4041,456,0 chrXIII 913588 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=23.55;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3910,435,0 chrXIII 913690 . A C 1839 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.147;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;MQRankSum=-1.554;QD=18.96;ReadPosRankSum=1.661;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1872,222,0 chrXIII 913697 . A G 1490 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=6.962;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=0;MQRankSum=-2.370;QD=16.02;ReadPosRankSum=2.397;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1523,180,0 chrXIII 913698 . C T 1548 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=17.01;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1581,180,0 chrXIII 913702 . A T 1454 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=16.16;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1487,168,0 chrXIII 913724 . G T 1569 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=14.26;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1602,177,0 chrXIII 913729 . A G 1337 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=111;Dels=0.00;FS=9.271;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;MQRankSum=1.118;QD=12.05;ReadPosRankSum=2.937;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:1370,162,0 chrXIII 913732 . G A 1453 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=12.42;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1486,168,0 chrXIII 913774 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=14.20;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2135,237,0 chrXIII 913783 . A T 2158 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=15.30;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2191,243,0 chrXIII 913792 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=15.58;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2230,246,0 chrXIII 913804 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=15.42;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2223,246,0 chrXIII 913834 . A G 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=127;Dels=0.00;FS=6.124;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-2.472;QD=12.37;ReadPosRankSum=2.943;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:3,121:127:99:1604,189,0 chrXIII 913867 . A G 1261 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=3.038;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=-1.858;QD=12.12;ReadPosRankSum=2.402;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1294,153,0 chrXIII 913873 . A C 1222 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=3.051;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;MQRankSum=-2.151;QD=12.34;ReadPosRankSum=2.400;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1255,150,0 chrXIII 913874 . T C 1183 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;MQRankSum=-1.520;QD=12.07;ReadPosRankSum=1.697;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1216,150,0 chrXIII 913888 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;QD=14.30;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1649,192,0 chrXIII 913943 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=20.29;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2935,336,0 chrXIII 914143 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.08;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3324,378,0 chrXIII 914575 . T C 2146 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.25;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2179,246,0 chrXIII 914619 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.69;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2019,228,0 chrXIII 914620 . T C 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=5.933;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.672;QD=20.67;ReadPosRankSum=1.661;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2059,231,0 chrXIII 914744 . T G 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=4.631;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.448;QD=23.66;ReadPosRankSum=1.619;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1476,165,0 chrXIII 914895 . A T 2458 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.19;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2491,279,0 chrXIII 915009 . T A 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.378;QD=22.62;ReadPosRankSum=1.693;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2024,222,0 chrXIII 915182 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=9.643;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.060;QD=20.35;ReadPosRankSum=2.393;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3581,402,0 chrXIII 915193 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.942;QD=19.38;ReadPosRankSum=2.410;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3565,411,0 chrXIII 915242 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7189;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.08;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3252,366,0 chrXIII 915275 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.83;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3646,426,0 chrXIII 915342 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.6124;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.26;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4082,465,0 chrXIII 915419 . G A 5247.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.4206;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.74;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5247,570,0 chrXIII 915455 . T G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.7615;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.943;QD=23.03;ReadPosRankSum=1.713;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4145,465,0 chrXIII 915486 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.49;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4188,477,0 chrXIII 915592 . T C 4370.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4370,495,0 chrXIII 915672 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.87;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3212,354,0 chrXIII 915718 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=147;Dels=0.00;FS=2.912;HaplotypeScore=11.3516;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.348;QD=21.88;ReadPosRankSum=2.399;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3249,375,0 chrXIII 915971 . A G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=120;Dels=0.00;FS=6.673;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.136;QD=20.99;ReadPosRankSum=2.408;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2552,303,0 chrXIII 916085 . T G 69.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241;DP=145;Dels=0.00;FS=3.670;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=29.18;MQ0=0;MQRankSum=0.243;QD=0.48;ReadPosRankSum=-3.718;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:139,6:145:28:99,0,28 chrXIII 916101 . T G 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=137;Dels=0.00;FS=3.036;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;MQRankSum=-0.924;QD=12.60;ReadPosRankSum=2.306;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:1759,198,0 chrXIII 916128 . G C 1227 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=75.3535;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.96;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1260,144,0 chrXIII 916136 . A G 335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.439;DP=107;Dels=0.00;FS=0.943;HaplotypeScore=83.0630;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.260;QD=3.13;ReadPosRankSum=-6.253;SB=-6.200e+01 GT:AD:DP:GQ:PL 1/1:87,20:107:42:368,42,0 chrXIII 916139 . G A 270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.041;DP=102;Dels=0.00;FS=3.468;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.694;QD=2.65;ReadPosRankSum=-1.734;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,19:102:33:303,33,0 chrXIII 916153 . T C 1040 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=8.89;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1073,123,0 chrXIII 916161 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=10.72;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1352,147,0 chrXIII 916168 . T A 1338 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=0;QD=10.79;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1371,150,0 chrXIII 916196 . G T 2124 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=14.07;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2157,243,0 chrXIII 916272 . T C 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=6.946;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=0;MQRankSum=-1.101;QD=21.19;ReadPosRankSum=2.398;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3106,360,0 chrXIII 916282 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=21.57;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3096,348,0 chrXIII 916378 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=21.13;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3245,363,0 chrXIII 916379 . C G 3204 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=21.36;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3237,366,0 chrXIII 916458 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=20.98;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2299,261,0 chrXIII 916492 . G A 2188 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=17.79;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2221,243,0 chrXIII 916500 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=4.061;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;MQRankSum=-1.245;QD=14.84;ReadPosRankSum=1.706;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2037,240,0 chrXIII 916511 . T C 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.965;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;MQRankSum=-1.459;QD=15.42;ReadPosRankSum=1.709;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2377,273,0 chrXIII 916536 . A G 2183 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=14.85;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2216,249,0 chrXIII 916550 . C A 2196 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=15.57;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2229,252,0 chrXIII 916551 . A G 2128 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=14.99;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2161,252,0 chrXIII 916598 . T A 2324 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=22.56;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2357,258,0 chrXIII 916639 . T G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.643;QD=22.66;ReadPosRankSum=1.666;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2458,285,0 chrXIII 916782 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=22.30;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2441,276,0 chrXIII 916813 . C A 2063 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.65;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2096,225,0 chrXIII 916816 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.23;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2075,231,0 chrXIII 917194 . G A 3112 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.03;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3145,357,0 chrXIII 917253 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.77;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3468,375,0 chrXIII 917437 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.0211;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.45;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2772,318,0 chrXIII 917789 . C T 1065 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=9;QD=17.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1098,126,0 chrXIII 918120 . C A 47.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=0;QD=8.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:80,9,0 chrXIII 918229 . T C 1102 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=42;QD=11.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1135,132,0 chrXIII 918260 . T C 859 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=21;MQRankSum=-1.733;QD=14.08;ReadPosRankSum=1.646;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,60:61:99:892,102,0 chrXIII 918322 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.88;MQ0=2;QD=2.38;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:55,6,0 chrXIII 918325 . C A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.88;MQ0=2;QD=1.98;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:51,6,0 chrXIII 918341 . T A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.81;MQ0=18;QD=0.99;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:6:55,6,0 chrXIII 918357 . T C 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=66;Dels=0.00;FS=8.741;HaplotypeScore=4.3066;MLEAC=2;MLEAF=1.00;MQ=13.78;MQ0=37;MQRankSum=-1.703;QD=0.62;ReadPosRankSum=2.742;SB=-4.785e+01 GT:AD:DP:GQ:PL 1/1:5,61:66:9:73,9,0 chrXIII 918497 . T C 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=3;MQRankSum=-0.344;QD=19.00;ReadPosRankSum=2.176;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:2,55:60:99:1173,141,0 chrXIII 918537 . G A 188.01 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.40;MQ0=56;QD=2.58;SB=-4.699e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:27:221,27,0 chrXIII 918675 . G A 816 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=33;QD=9.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:83:96:849,96,0 chrXIII 919196 . T C 155.06 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=5.17;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,29:30:21:188,21,0 chrXIII 919198 . G C 207.01 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=6.68;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:27:240,27,0 chrXIII 919224 . G A 286 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=8.41;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:33:319,33,0 chrXIII 919232 . A G 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.080;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=0;MQRankSum=0.738;QD=2.21;ReadPosRankSum=0.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,17:33:99:103,0,108 chrXIII 919313 . C T 294 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=16.06;MQ0=4;QD=7.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:39:327,39,0 chrXIII 919337 . T C 317 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.47;MQ0=7;QD=7.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:42:350,42,0 chrXIII 919341 . G A 313 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.36;MQ0=7;QD=6.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:47:42:346,42,0 chrXIII 919366 . A G 1591 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=7;QD=14.73;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1624,186,0 chrXIII 919400 . T C 2017 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=117;Dels=0.00;FS=2.576;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=4;MQRankSum=-1.723;QD=17.24;ReadPosRankSum=1.313;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2050,228,0 chrXIII 919401 . G C 2058 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=4;QD=17.44;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2091,231,0 chrXIII 919473 . T C 1880 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=2;QD=16.35;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1913,216,0 chrXIII 919476 . A G 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=119;Dels=0.00;FS=17.559;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=3;MQRankSum=0.577;QD=14.71;ReadPosRankSum=1.702;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,116:119:99:1783,210,0 chrXIII 919640 . A G 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=249;Dels=0.00;FS=3.028;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=3;MQRankSum=1.283;QD=21.62;ReadPosRankSum=2.399;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:3,244:249:99:5384,618,0 chrXIII 919693 . T C 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=46.0547;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;MQRankSum=-1.271;QD=21.18;ReadPosRankSum=1.702;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:4956,561,0 chrXIII 919897 . T C 3351.01 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=12;QD=18.31;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3351,381,0 chrXIII 919960 . T C 2524 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=140;Dels=0.00;FS=6.592;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=5;MQRankSum=-0.028;QD=18.03;ReadPosRankSum=2.413;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2557,294,0 chrXIII 920063 . A G 1579 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=169;Dels=0.00;FS=5.628;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=69;MQRankSum=0.419;QD=9.34;ReadPosRankSum=1.696;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,163:169:99:1612,189,0 chrXIII 920279 . G A 3391.01 filter AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=68;QD=14.68;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3391,381,0 chrXIII 920286 . A T 3918.01 filter AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=48;QD=17.03;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:2,228:230:99:3918,444,0 chrXIII 920303 . C A 5211.01 filter AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=8.7031;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=31;QD=19.23;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,268:271:99:5211,600,0 chrXIII 920352 . G A 5687.01 filter AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=15;QD=18.52;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:5687,654,0 chrXIII 920576 . C T 1339 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=19;QD=10.07;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1372,159,0 chrXIII 920936 . T C 1812 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=21.04;MQ0=33;MQRankSum=-1.046;QD=13.52;ReadPosRankSum=1.698;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:1,133:134:99:1845,222,0 chrXIII 921041 . A T 518 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=108;Dels=0.00;FS=18.976;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.71;MQ0=29;MQRankSum=-1.644;QD=4.80;ReadPosRankSum=1.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,107:108:69:551,69,0 chrXIII 921577 . G C 153.06 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.71;MQ0=51;QD=2.59;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,58:59:21:186,21,0 chrXIII 921858 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.34;MQ0=1;QD=3.26;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:54,6,0 chrXIII 921878 . A C 44.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=1;QD=2.14;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,20:21:9:77,9,0 chrXIII 921903 . A G 385 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=6.75;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:48:418,48,0 chrXIII 921904 . A G 454 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=7.83;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,57:58:57:487,57,0 chrXIII 921912 . A C 681 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.6780;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;MQRankSum=-1.282;QD=8.84;ReadPosRankSum=-1.282;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,76:77:84:714,84,0 chrXIII 921949 . A C 1190 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=10.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1223,141,0 chrXIII 921950 . T C 1224 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;MQRankSum=-1.478;QD=10.29;ReadPosRankSum=2.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:1257,141,0 chrXIII 921982 . G A 1275 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=0;QD=12.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1308,153,0 chrXIII 922031 . G A 297 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.00;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:36:330,36,0 chrXIII 922071 . G A 620 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=20.00;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,27:31:75:653,75,0 chrXIII 922118 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=10.144;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;MQRankSum=-1.286;QD=21.55;ReadPosRankSum=2.351;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3265,375,0 chrXIII 922131 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.8318;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=22.32;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4040,468,0 chrXIII 922245 . A G 586 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=14;QD=8.49;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:72:619,72,0 chrXIII 922248 . C T 578 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=10;QD=9.32;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:66:611,66,0 chrXIII 922254 . G T 168.12 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.169;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=3;MQRankSum=-1.704;QD=4.94;ReadPosRankSum=2.639;SB=-7.704e+01 GT:AD:DP:GQ:PL 1/1:4,30:34:5:199,5,0 chrXIII 922255 . C T 186.03 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=3;QD=5.64;SB=-7.804e+01 GT:AD:DP:GQ:PL 1/1:0,30:33:24:219,24,0 chrXIII 922257 . A T 179.03 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=0;QD=6.63;SB=-7.604e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:24:212,24,0 chrXIII 922258 . C G 174.03 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=0;QD=6.69;SB=-7.504e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:24:207,24,0 chrXIII 922262 . A G 172.03 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.68;MQ0=0;QD=4.78;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:24:205,24,0 chrXIII 922267 . T C 175.03 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;QD=4.49;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:24:208,24,0 chrXIII 922272 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;QD=0.88;SB=-1.948e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:6:54,6,0 chrXIII 922273 . T C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;QD=1.73;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:9:77,9,0 chrXIII 922274 . A G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;QD=1.77;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:9:78,9,0 chrXIII 922278 . C A 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=0;QD=2.71;SB=-2.203e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:15:133,15,0 chrXIII 922282 . A C 121.13 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;QD=2.95;SB=-2.531e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:18:154,18,0 chrXIII 922298 . A T 276 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;QD=5.52;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:33:309,33,0 chrXIII 922299 . T C 294 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=9.379;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;MQRankSum=0.642;QD=5.65;ReadPosRankSum=2.355;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:39:327,39,0 chrXIII 922303 . G A 342 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=1;QD=5.70;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:42:375,42,0 chrXIII 922340 . G T 1322 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=23.96;MQ0=23;QD=10.75;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1355,156,0 chrXIII 922387 . C G 2255 filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=24.87;MQ0=37;QD=13.92;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2288,258,0 chrXIII 922388 . A G 2260 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=37;QD=14.04;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2293,258,0 chrXIII 922489 . T G 176.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.44;MQ0=0;QD=12.57;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,13:14:27:209,27,0 chrXIII 922493 . G C 278 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.53;MQ0=1;QD=15.44;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,17:18:39:311,39,0 chrXIII 922496 . A C 436 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=1;QD=17.44;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,24:25:57:469,57,0 chrXIII 922567 . G T 1802 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.5321;MLEAC=2;MLEAF=1.00;MQ=21.95;MQ0=64;QD=11.33;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1835,207,0 chrXIII 922594 . C T 905 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=81;QD=5.73;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,153:158:99:938,105,0 chrXIII 922596 . C T 874 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=17.31;MQ0=83;QD=5.71;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,153:153:99:907,105,0 chrXIII 922667 . C T 362 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.33;MQ0=51;QD=2.97;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,122:122:54:395,54,0 chrXIII 922772 . C T 726 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.30;MQ0=75;QD=5.81;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:10,115:125:87:759,87,0 chrXIII 922919 . A G 283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.571;DP=112;Dels=0.00;FS=2.642;HaplotypeScore=6.3054;MLEAC=1;MLEAF=0.500;MQ=20.98;MQ0=41;MQRankSum=-0.432;QD=2.53;ReadPosRankSum=-0.847;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:38,74:112:99:313,0,212 chrXIII 922946 . C T 314 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=16;QD=5.06;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:14,47:62:39:347,39,0 chrXIII 922949 . T C 311 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=17;QD=4.94;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:14,49:63:39:344,39,0 chrXIII 922967 . T C 208.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=21.28;MQ0=35;MQRankSum=0.743;QD=2.70;ReadPosRankSum=1.650;SB=-2.502e+01 GT:AD:DP:GQ:PL 1/1:1,76:77:27:241,27,0 chrXIII 923132 . G T 3398.01 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=9;QD=19.76;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3398,381,0 chrXIII 923183 . A G 4495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=205;Dels=0.00;FS=6.676;HaplotypeScore=6.5229;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=2;MQRankSum=1.490;QD=21.93;ReadPosRankSum=1.680;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4495,536,0 chrXIII 923213 . T A 3584.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.4596;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=23.74;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3584,387,0 chrXIII 923260 . G A 860 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=7;QD=16.54;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:893,102,0 chrXIII 923269 . A G 614 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=8;QD=13.35;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:75:647,75,0 chrXIII 923283 . T G 457 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=49;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.49;MQ0=9;MQRankSum=0.520;QD=9.33;ReadPosRankSum=1.559;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:57:490,57,0 chrXIII 923299 . T C 982 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=82;Dels=0.00;FS=8.159;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=9;MQRankSum=0.048;QD=11.98;ReadPosRankSum=1.684;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1015,120,0 chrXIII 923305 . A C 1253 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=9;QD=12.05;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1286,150,0 chrXIII 923396 . A T 5301.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=1;QD=23.35;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5301,579,0 chrXIII 923430 . A G 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=1;MQRankSum=-0.577;QD=20.31;ReadPosRankSum=2.374;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2693,312,0 chrXIII 923469 . T A 306 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.00;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:339,36,0 chrXIII 923473 . C T 191.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.94;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:224,24,0 chrXIII 923478 . G T 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=10.34;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:157,18,0 chrXIII 923489 . A G 361 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=16.41;SB=-6.777e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:45:394,45,0 chrXIII 923490 . C T 390 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=16.96;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:45:423,45,0 chrXIII 923508 . A C 1146 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=0;QD=19.76;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1179,132,0 chrXIII 923528 . T G 1487 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=20.09;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1520,171,0 chrXIII 923556 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=18.74;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2038,243,0 chrXIII 923589 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=19.12;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1467,165,0 chrXIII 923602 . T G 950 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:983,114,0 chrXIII 923604 . G C 967 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1000,114,0 chrXIII 923606 . A T 1012 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1045,114,0 chrXIII 923629 . A T 472 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=15.6078;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.595;QD=18.88;ReadPosRankSum=1.595;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:1,24:25:57:505,57,0 chrXIII 923636 . C A 303 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.20;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:336,39,0 chrXIII 923654 . T C 90.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=1;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,6:7:15:123,15,0 chrXIII 923767 . A C 54.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.83;MQ0=3;QD=6.06;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrXIII 923782 . A G 54.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=2;QD=4.19;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:87,12,0 chrXIII 923803 . A G 54.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.54;MQ0=2;MQRankSum=-2.115;QD=2.27;ReadPosRankSum=2.507;SB=3.02 GT:AD:DP:GQ:PL 1/1:7,17:24:12:87,12,0 chrXIII 923809 . A G 107.13 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=18.86;MQ0=1;QD=4.46;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:140,18,0 chrXIII 923821 . A G 97.13 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=19.13;MQ0=1;QD=3.47;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,21:28:18:130,18,0 chrXIII 923859 . G A 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7602;MLEAC=1;MLEAF=0.500;MQ=19.21;MQ0=0;MQRankSum=-2.598;QD=1.23;ReadPosRankSum=1.559;SB=-9.959e-03 GT:AD:DP:GQ:PL 0/1:20,42:62:28:106,0,28 chrXIII 923912 . T C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=11.8343;MLEAC=1;MLEAF=0.500;MQ=18.27;MQ0=0;MQRankSum=2.217;QD=0.37;ReadPosRankSum=2.194;SB=-6.563e-03 GT:AD:DP:GQ:PL 0/1:18,28:46:47:47,0,47 chrXIII 923914 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.980;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=11.8343;MLEAC=2;MLEAF=1.00;MQ=18.35;MQ0=0;MQRankSum=2.471;QD=1.27;ReadPosRankSum=-0.158;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:6,37:43:12:87,12,0 chrXIII 923915 . C A 33.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=11.0456;MLEAC=1;MLEAF=0.500;MQ=18.35;MQ0=0;MQRankSum=2.327;QD=0.77;ReadPosRankSum=0.339;SB=8.96 GT:AD:DP:GQ:PL 1/1:6,28:43:9:65,9,0 chrXIII 923917 . T A 33.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.745;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=11.0456;MLEAC=1;MLEAF=0.500;MQ=18.35;MQ0=0;MQRankSum=1.965;QD=0.77;ReadPosRankSum=0.384;SB=8.96 GT:AD:DP:GQ:PL 1/1:6,28:43:9:65,9,0 chrXIII 924014 . A G 367.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;DP=27;Dels=0.00;FS=4.039;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.69;MQ0=0;MQRankSum=0.887;QD=13.59;ReadPosRankSum=2.739;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:3,24:27:22:400,22,0 chrXIII 924029 . A G 688 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=19.21;MQ0=1;QD=17.64;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:1,37:39:96:721,96,0 chrXIII 924037 . G C 974 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=18.1218;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=3;QD=14.32;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,60:68:99:1007,131,0 chrXIII 924045 . T C 418.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;DP=105;Dels=0.00;FS=52.682;HaplotypeScore=21.0614;MLEAC=1;MLEAF=0.500;MQ=19.30;MQ0=4;MQRankSum=-0.684;QD=3.98;ReadPosRankSum=2.592;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,36:105:99:448,0,817 chrXIII 924046 . G A 415.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.592;DP=113;Dels=0.00;FS=49.247;HaplotypeScore=21.0066;MLEAC=1;MLEAF=0.500;MQ=19.08;MQ0=4;MQRankSum=-2.541;QD=3.67;ReadPosRankSum=1.246;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,41:113:99:445,0,816 chrXIII 924072 . A G 102.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DP=124;Dels=0.00;FS=9.917;HaplotypeScore=20.5993;MLEAC=1;MLEAF=0.500;MQ=19.89;MQ0=4;MQRankSum=-2.624;QD=0.82;ReadPosRankSum=4.711;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:95,29:124:99:132,0,1224 chrXIII 924074 . G T 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;DP=124;Dels=0.00;FS=9.917;HaplotypeScore=19.6259;MLEAC=1;MLEAF=0.500;MQ=19.89;MQ0=4;MQRankSum=-3.709;QD=1.02;ReadPosRankSum=4.019;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:95,29:124:99:156,0,1071 chrXIII 924078 . A G 1446 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.924;DP=118;Dels=0.00;FS=3.312;HaplotypeScore=27.5561;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=4;MQRankSum=-0.365;QD=12.25;ReadPosRankSum=6.992;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:20,97:118:99:1479,111,0 chrXIII 924092 . T C 955.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;DP=109;Dels=0.00;FS=23.729;HaplotypeScore=10.7588;MLEAC=1;MLEAF=0.500;MQ=20.60;MQ0=5;MQRankSum=1.992;QD=8.76;ReadPosRankSum=3.843;SB=-4.670e+02 GT:AD:DP:GQ:PL 0/1:41,68:109:99:985,0,405 chrXIII 924136 . C G 229 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=21.99;MQ0=0;QD=11.45;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,19:20:30:262,30,0 chrXIII 924140 . A G 219.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.200;DP=16;Dels=0.00;FS=39.035;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;MQRankSum=3.091;QD=13.69;ReadPosRankSum=3.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,10:16:27:252,27,0 chrXIII 924155 . C T 182.03 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:215,24,0 chrXIII 924216 . G A 66.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.898;DP=35;Dels=0.00;FS=25.659;HaplotypeScore=8.7667;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=1;MQRankSum=2.342;QD=1.90;ReadPosRankSum=0.351;SB=-6.255e+01 GT:AD:DP:GQ:PL 1/1:26,9:35:12:99,12,0 chrXIII 924224 . C G 63.51 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=15.5704;MLEAC=2;MLEAF=1.00;MQ=21.85;MQ0=1;QD=1.59;SB=-7.752e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:12:96,12,0 chrXIII 924242 . A G 20.18 LowQual;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=28.1122;MLEAC=1;MLEAF=0.500;MQ=21.67;MQ0=1;QD=0.52;SB=-3.563e+01 GT:AD:DP:GQ:PL 1/1:1,7:39:6:51,6,0 chrXIII 924268 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=6.8886;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=0;MQRankSum=1.568;QD=1.70;ReadPosRankSum=-1.568;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:6,4:14:6:55,6,0 chrXIII 924277 . G T 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=21;Dels=0.00;FS=9.565;HaplotypeScore=28.3350;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;MQRankSum=-0.634;QD=1.81;ReadPosRankSum=1.664;SB=-5.197e+01 GT:AD:DP:GQ:PL 1/1:13,7:21:9:70,9,0 chrXIII 924288 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.000;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;MQRankSum=-1.600;QD=0.86;ReadPosRankSum=0.533;SB=1.24 GT:AD:DP:GQ:PL 1/1:9,5:14:6:43,6,0 chrXIV 6912 . C G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.309;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=4;MQRankSum=0.662;QD=0.79;ReadPosRankSum=-1.518;SB=1.24 GT:AD:DP:GQ:PL 1/1:10,15:25:6:51,6,0 chrXIV 6914 . G C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.464;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.9620;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=4;MQRankSum=0.584;QD=0.91;ReadPosRankSum=-1.596;SB=1.24 GT:AD:DP:GQ:PL 1/1:10,15:25:6:54,6,0 chrXIV 6923 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.048;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=7.3278;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=5;MQRankSum=-0.217;QD=0.55;ReadPosRankSum=1.443;SB=1.24 GT:AD:DP:GQ:PL 1/1:19,17:36:6:51,6,0 chrXIV 6941 . T A 74.51 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=20.35;MQ0=12;QD=1.38;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,53:54:12:107,12,0 chrXIV 6955 . T C 80.51 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=17;QD=1.10;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,73:73:12:113,12,0 chrXIV 6964 . A G 96.26 filter AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=17;QD=0.27;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,352:353:15:129,15,0 chrXIV 6984 . T C 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.523;DP=415;Dels=0.00;FS=0.000;HaplotypeScore=28.3480;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=16;MQRankSum=-0.649;QD=0.24;ReadPosRankSum=1.363;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:25,390:415:35:131,0,35 chrXIV 7005 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.007;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=78.7921;MLEAC=2;MLEAF=1.00;MQ=22.06;MQ0=13;MQRankSum=3.159;QD=0.06;ReadPosRankSum=-13.306;SB=1.24 GT:AD:DP:GQ:PL 1/1:298,79:377:6:53,6,0 chrXIV 7010 . T C 196.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=70.2440;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=13;QD=0.53;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,369:369:27:229,27,0 chrXIV 7030 . T C 174.03 filter AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=4;QD=0.77;SB=-2.604e+01 GT:AD:DP:GQ:PL 1/1:0,227:227:24:207,24,0 chrXIV 7041 . T A 172.03 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=25.6632;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=0;QD=1.12;SB=-2.604e+01 GT:AD:DP:GQ:PL 1/1:0,154:154:24:205,24,0 chrXIV 7049 . G T 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.125;DP=53;Dels=0.00;FS=7.243;HaplotypeScore=26.5791;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=0;MQRankSum=-2.012;QD=0.87;ReadPosRankSum=1.580;SB=2.03 GT:AD:DP:GQ:PL 1/1:10,43:53:9:78,9,0 chrXIV 7050 . T A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.822;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=26.5791;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=0;MQRankSum=-2.612;QD=0.74;ReadPosRankSum=1.161;SB=2.03 GT:AD:DP:GQ:PL 1/1:9,43:53:9:71,9,0 chrXIV 7052 . A G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.143;DP=53;Dels=0.00;FS=6.829;HaplotypeScore=26.5791;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=0;MQRankSum=-2.051;QD=0.77;ReadPosRankSum=1.853;SB=2.03 GT:AD:DP:GQ:PL 1/1:11,42:53:9:73,9,0 chrXIV 7057 . T C 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=18.88;MQ0=0;QD=2.44;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,52:52:18:160,18,0 chrXIV 7136 . A G 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;DP=289;Dels=0.00;FS=2.719;HaplotypeScore=56.2056;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=23;MQRankSum=-3.109;QD=0.42;ReadPosRankSum=0.707;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:238,45:289:99:152,0,2826 chrXIV 7155 . C T 178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.635;DP=529;Dels=0.00;FS=0.000;HaplotypeScore=5.6063;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=33;MQRankSum=1.796;QD=0.34;ReadPosRankSum=10.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:424,105:529:99:208,0,5184 chrXIV 7164 . T C 6852.01 filter AC=2;AF=1.00;AN=2;DP=548;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=22.25;MQ0=42;QD=12.50;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,547:548:99:6852,803,0 chrXIV 7173 . C T 4922.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;DP=560;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=54;MQRankSum=2.270;QD=8.79;ReadPosRankSum=-2.286;SB=-1.210e+03 GT:AD:DP:GQ:PL 0/1:114,446:560:99:4922,0,138 chrXIV 7210 . C T 6178.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.205;DP=562;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=20.95;MQ0=88;MQRankSum=0.365;QD=10.99;ReadPosRankSum=0.022;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:9,552:562:99:6178,728,0 chrXIV 7281 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.63;MQ0=22;QD=0.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:24:6:48,6,0 chrXIV 7298 . C T 191.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=11.94;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:224,27,0 chrXIV 7308 . A G 462 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=1;QD=13.59;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:57:495,57,0 chrXIV 7313 . G A 511 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=1;QD=13.45;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:63:544,63,0 chrXIV 7327 . C T 415.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9704;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=3;MQRankSum=0.011;QD=7.16;ReadPosRankSum=-0.011;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,48:58:88:445,0,88 chrXIV 7346 . C T 1091 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.8599;MLEAC=2;MLEAF=1.00;MQ=23.96;MQ0=3;QD=13.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1124,126,0 chrXIV 7357 . A G 1048 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.8409;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=3;QD=13.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1081,123,0 chrXIV 7367 . C A 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.915;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=23.6046;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=3;MQRankSum=-1.908;QD=1.75;ReadPosRankSum=-1.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,29:80:99:170,0,631 chrXIV 7368 . A C 142.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=23.6046;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=3;MQRankSum=-0.699;QD=1.78;ReadPosRankSum=-0.909;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,29:80:99:172,0,637 chrXIV 7369 . C T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=23.6046;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=3;MQRankSum=0.579;QD=0.31;ReadPosRankSum=-1.784;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,9:80:55:55,0,764 chrXIV 7370 . T C 333.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=23.6046;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=3;MQRankSum=-1.089;QD=4.16;ReadPosRankSum=-1.641;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,40:80:99:363,0,357 chrXIV 7391 . A T 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.012;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.9220;MLEAC=1;MLEAF=0.500;MQ=23.76;MQ0=3;MQRankSum=1.417;QD=0.38;ReadPosRankSum=-1.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,6:65:55:55,0,470 chrXIV 7400 . T C 396.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.273;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=16.7300;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=2;MQRankSum=-0.945;QD=9.21;ReadPosRankSum=0.242;SB=-4.099e-02 GT:AD:DP:GQ:PL 0/1:4,39:43:17:426,0,17 chrXIV 7408 . C A 340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=0;QD=11.72;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:42:373,42,0 chrXIV 7409 . A G 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.219;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=0;MQRankSum=-0.731;QD=4.45;ReadPosRankSum=-1.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,20:29:99:159,0,113 chrXIV 8986 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.358;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=0;MQRankSum=0.722;QD=1.17;ReadPosRankSum=-1.684;SB=1.24 GT:AD:DP:GQ:PL 1/1:9,8:17:6:51,6,0 chrXIV 8993 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.939;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=0;MQRankSum=0.939;QD=1.25;ReadPosRankSum=-1.266;SB=1.24 GT:AD:DP:GQ:PL 1/1:10,9:19:6:55,6,0 chrXIV 8995 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.633;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=0;MQRankSum=0.939;QD=1.15;ReadPosRankSum=-1.347;SB=1.24 GT:AD:DP:GQ:PL 1/1:10,9:19:6:53,6,0 chrXIV 8998 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.747;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;MQRankSum=0.532;QD=1.09;ReadPosRankSum=-0.532;SB=1.24 GT:AD:DP:GQ:PL 1/1:11,9:20:6:53,6,0 chrXIV 9000 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.462;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;MQRankSum=1.599;QD=1.13;ReadPosRankSum=0.036;SB=1.24 GT:AD:DP:GQ:PL 1/1:12,9:21:6:55,6,0 chrXIV 9001 . T A 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.165;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;MQRankSum=1.732;QD=0.90;ReadPosRankSum=0.598;SB=1.24 GT:AD:DP:GQ:PL 1/1:14,9:23:6:52,6,0 chrXIV 9005 . C T 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=1.31;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:9:78,9,0 chrXIV 9023 . A C 177.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.463;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;MQRankSum=0.706;QD=3.41;ReadPosRankSum=3.551;SB=-5.410e-01 GT:AD:DP:GQ:PL 1/1:12,40:52:2:207,2,0 chrXIV 9030 . C T 244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=4.69;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,52:52:30:277,30,0 chrXIV 9033 . A C 173.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.225;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;MQRankSum=-0.662;QD=3.34;ReadPosRankSum=5.202;SB=-5.410e-01 GT:AD:DP:GQ:PL 1/1:12,40:52:2:203,2,0 chrXIV 9181 . C T 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=8;MQRankSum=-0.585;QD=4.58;ReadPosRankSum=3.340;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:13,30:43:99:227,0,107 chrXIV 9184 . G T 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=8;MQRankSum=1.898;QD=1.71;ReadPosRankSum=-4.202;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:31,14:45:99:107,0,205 chrXIV 9307 . G T 735 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=18.49;MQ0=35;QD=7.99;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:5,60:92:87:768,87,0 chrXIV 9376 . C A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.76;MQ0=3;QD=1.32;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:51,6,0 chrXIV 9382 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.19;MQ0=2;QD=2.94;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:79,9,0 chrXIV 9452 . T C 447.79 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=18.48;MQ0=44;MQRankSum=-0.353;QD=4.98;ReadPosRankSum=-2.188;SB=-3.635e+00 GT:AD:DP:GQ:PL 0/1:49,41:90:4:477,0,4 chrXIV 9454 . C T 477.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=18.36;MQ0=45;MQRankSum=0.430;QD=5.19;ReadPosRankSum=-1.323;SB=1.43 GT:AD:DP:GQ:PL 0/1:51,41:92:22:507,0,22 chrXIV 9455 . A G 458.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=18.16;MQ0=47;MQRankSum=0.080;QD=4.87;ReadPosRankSum=-1.323;SB=1.43 GT:AD:DP:GQ:PL 0/1:52,41:94:22:488,0,22 chrXIV 9460 . G C 435.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.311;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.97;MQ0=49;MQRankSum=-0.239;QD=4.53;ReadPosRankSum=-2.630;SB=1.74 GT:AD:DP:GQ:PL 0/1:55,41:96:21:465,0,21 chrXIV 9662 . G A 43.97 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=14.13;MQ0=7;QD=1.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:29:9:76,9,0 chrXIV 9739 . A G 1241 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=36;QD=12.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1274,153,0 chrXIV 9766 . G C 1018 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.170;DP=91;Dels=0.00;FS=42.379;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=43;MQRankSum=2.428;QD=11.19;ReadPosRankSum=-0.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,61:91:99:1051,120,0 chrXIV 9826 . T A 316 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.02;MQ0=41;QD=5.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,52:61:39:349,39,0 chrXIV 9883 . G T 1285 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.799;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=26;MQRankSum=0.977;QD=12.36;ReadPosRankSum=-1.688;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:14,90:104:99:1318,150,0 chrXIV 9889 . C T 1352 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.260;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=21;MQRankSum=0.823;QD=13.39;ReadPosRankSum=-0.520;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:13,88:101:99:1385,156,0 chrXIV 9913 . T C 1638 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=14;MQRankSum=1.119;QD=14.89;ReadPosRankSum=0.974;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:10,100:110:99:1671,198,0 chrXIV 9970 . C T 1534 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=25;QD=15.81;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1567,177,0 chrXIV 10008 . A G 805 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.057;DP=76;Dels=0.00;FS=2.787;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=32;MQRankSum=-0.423;QD=10.59;ReadPosRankSum=2.282;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:99:838,99,0 chrXIV 10064 . A G 775 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=11;QD=14.62;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:808,93,0 chrXIV 10105 . A G 773 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=1;QD=13.80;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:93:806,93,0 chrXIV 10172 . G A 1044 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=18;QD=13.38;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1077,126,0 chrXIV 10198 . A G 164.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=76;Dels=0.00;FS=37.227;HaplotypeScore=6.7656;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=20;MQRankSum=1.043;QD=2.16;ReadPosRankSum=0.354;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,18:76:99:194,0,403 chrXIV 10252 . G A 15.21 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.55;MQ0=11;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.365;SB=-4.607e+01 GT:AD:DP:GQ:PL 0/1:8,13:21:15:45,0,15 chrXIV 10272 . G A 74.51 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=9;QD=4.38;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,16:17:12:107,12,0 chrXIV 10411 . C T 482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.502;DP=117;Dels=0.00;FS=4.481;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=29.71;MQ0=23;MQRankSum=0.195;QD=4.12;ReadPosRankSum=-0.847;SB=-2.280e+02 GT:AD:DP:GQ:PL 0/1:79,36:117:99:512,0,1091 chrXIV 10438 . A T 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DP=67;Dels=0.00;FS=1.596;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=27.96;MQ0=26;MQRankSum=-0.835;QD=1.39;ReadPosRankSum=1.402;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:56,11:67:99:123,0,583 chrXIV 10443 . G T 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=28;MQRankSum=-1.516;QD=1.65;ReadPosRankSum=0.910;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:49,12:62:99:132,0,408 chrXIV 10460 . C A 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.31;MQ0=36;MQRankSum=1.920;QD=3.33;ReadPosRankSum=-0.609;SB=-9.099e+01 GT:AD:DP:GQ:PL 0/1:10,44:54:62:210,0,62 chrXIV 10478 . A C 284 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.38;MQ0=33;QD=5.68;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:36:317,36,0 chrXIV 10486 . A G 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.021;DP=51;Dels=0.00;FS=5.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=30;MQRankSum=-1.753;QD=0.63;ReadPosRankSum=-0.336;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,9:51:62:62,0,240 chrXIV 10487 . T C 331 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=19.03;MQ0=30;QD=6.49;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:42:364,42,0 chrXIV 10497 . A G 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;DP=60;Dels=0.00;FS=15.222;HaplotypeScore=5.4294;MLEAC=1;MLEAF=0.500;MQ=20.99;MQ0=27;MQRankSum=-0.343;QD=1.78;ReadPosRankSum=0.343;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:41,19:60:99:137,0,186 chrXIV 10504 . C T 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;DP=70;Dels=0.00;FS=8.787;HaplotypeScore=5.4294;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=22;MQRankSum=-0.033;QD=1.04;ReadPosRankSum=0.317;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:51,19:70:99:103,0,335 chrXIV 10567 . A G 1619 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=121.4804;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=9;QD=11.17;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:1652,186,0 chrXIV 10574 . A C 60.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.056;DP=148;Dels=0.01;FS=9.685;HaplotypeScore=238.9490;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=7;MQRankSum=0.865;QD=0.41;ReadPosRankSum=-7.063;SB=2.49 GT:AD:DP:GQ:PL 1/1:122,25:147:12:93,12,0 chrXIV 10666 . T G 93.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=3;QD=6.22;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,14:15:15:126,15,0 chrXIV 10683 . T C 82.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.79;MQ0=1;QD=5.48;SB=-9.076e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:115,15,0 chrXIV 10693 . G A 125.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=0;QD=7.36;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:21:158,21,0 chrXIV 10694 . T C 125.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=20;Dels=0.00;FS=9.565;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.04;MQ0=0;MQRankSum=-1.827;QD=6.25;ReadPosRankSum=2.079;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:2,18:20:21:158,21,0 chrXIV 10708 . A G 469 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=22.11;MQ0=0;QD=10.91;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,40:43:63:502,63,0 chrXIV 10771 . A G 5716.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=265;Dels=0.00;FS=6.408;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=4;MQRankSum=1.598;QD=21.57;ReadPosRankSum=1.705;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,261:265:99:5716,648,0 chrXIV 10832 . C T 514.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DP=216;Dels=0.00;FS=0.896;HaplotypeScore=7.0869;MLEAC=1;MLEAF=0.500;MQ=38.30;MQ0=19;MQRankSum=0.145;QD=2.38;ReadPosRankSum=0.157;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:165,49:216:99:544,0,2646 chrXIV 10855 . T G 1792 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.408;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=18;MQRankSum=1.739;QD=14.00;ReadPosRankSum=4.359;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:7,121:128:99:1825,210,0 chrXIV 10872 . A G 334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.385;DP=78;Dels=0.00;FS=4.105;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.17;MQ0=25;MQRankSum=-0.045;QD=4.28;ReadPosRankSum=1.940;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:33,42:78:99:364,0,257 chrXIV 10888 . A G 196.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.863;DP=65;Dels=0.00;FS=11.335;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=13.88;MQ0=46;MQRankSum=1.267;QD=3.02;ReadPosRankSum=2.162;SB=-4.696e+01 GT:AD:DP:GQ:PL 1/1:2,61:65:27:229,27,0 chrXIV 10897 . G T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.874;DP=97;Dels=0.00;FS=1.570;HaplotypeScore=22.8717;MLEAC=1;MLEAF=0.500;MQ=14.95;MQ0=45;MQRankSum=-0.169;QD=0.43;ReadPosRankSum=0.888;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:79,18:97:72:72,0,289 chrXIV 10986 . G T 8889.01 filter AC=2;AF=1.00;AN=2;DP=450;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=4;QD=19.75;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:0,449:450:99:8889,999,0 chrXIV 11017 . T C 1126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.254;DP=388;Dels=0.00;FS=2.558;HaplotypeScore=20.4510;MLEAC=1;MLEAF=0.500;MQ=39.49;MQ0=6;MQRankSum=1.068;QD=2.90;ReadPosRankSum=2.336;SB=-4.790e+02 GT:AD:DP:GQ:PL 0/1:288,98:388:99:1156,0,5174 chrXIV 11069 . C T 1874.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.206;DP=243;Dels=0.00;FS=7.628;HaplotypeScore=26.5416;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=14;MQRankSum=-0.364;QD=7.71;ReadPosRankSum=0.380;SB=-1.045e+03 GT:AD:DP:GQ:PL 0/1:66,171:243:99:1904,0,786 chrXIV 11193 . G A 3100 filter AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=18.9713;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=7;QD=9.78;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:3133,354,0 chrXIV 11228 . T C 1926 filter AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=18.32;MQ0=16;QD=6.76;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,283:285:99:1959,231,0 chrXIV 11232 . A C 1897 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=283;Dels=0.00;FS=6.070;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=18.34;MQ0=17;MQRankSum=-1.931;QD=6.70;ReadPosRankSum=2.431;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,279:282:99:1930,225,0 chrXIV 11321 . T A 128.98 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721;DP=208;Dels=0.00;FS=7.490;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.11;MQ0=15;MQRankSum=-0.686;QD=0.62;ReadPosRankSum=-0.143;SB=-3.979e+00 GT:AD:DP:GQ:PL 0/1:62,143:208:3:158,0,3 chrXIV 11323 . T A 169.03 filter AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.01;MQ0=14;QD=0.82;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:3,203:206:24:202,24,0 chrXIV 11336 . T C 145.06 filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=14.92;MQ0=10;QD=0.80;SB=-7.756e+01 GT:AD:DP:GQ:PL 1/1:0,182:182:21:178,21,0 chrXIV 11354 . T C 515 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=155;Dels=0.00;FS=24.066;HaplotypeScore=127.7048;MLEAC=2;MLEAF=1.00;MQ=17.65;MQ0=3;MQRankSum=-2.175;QD=3.32;ReadPosRankSum=2.401;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:2,153:155:63:548,63,0 chrXIV 11464 . G C 4755.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;DP=452;Dels=0.00;FS=2.806;HaplotypeScore=9.8350;MLEAC=1;MLEAF=0.500;MQ=20.48;MQ0=81;MQRankSum=-1.251;QD=10.52;ReadPosRankSum=-2.152;SB=-9.530e+02 GT:AD:DP:GQ:PL 0/1:121,327:452:99:4755,0,1217 chrXIV 11808 . G A 4207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.382;DP=632;Dels=0.00;FS=0.000;HaplotypeScore=30.1238;MLEAC=1;MLEAF=0.500;MQ=23.91;MQ0=61;MQRankSum=-3.347;QD=6.66;ReadPosRankSum=-0.524;SB=-1.959e+03 GT:AD:DP:GQ:PL 0/1:308,319:629:99:4207,0,4724 chrXIV 11814 . T C 5172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.170;DP=656;Dels=0.01;FS=0.291;HaplotypeScore=31.8830;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=45;MQRankSum=0.569;QD=7.88;ReadPosRankSum=1.229;SB=-2.519e+03 GT:AD:DP:GQ:PL 0/1:337,311:651:99:5172,0,4808 chrXIV 11914 . A G 603.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;DP=341;Dels=0.00;FS=0.766;HaplotypeScore=19.0319;MLEAC=1;MLEAF=0.500;MQ=11.92;MQ0=246;MQRankSum=0.212;QD=1.77;ReadPosRankSum=0.309;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:151,189:341:99:633,0,625 chrXIV 11976 . T A 895 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.81;MQ0=94;QD=3.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:928,105,0 chrXIV 11978 . C T 142.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.645;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.51;MQ0=86;MQRankSum=-3.979;QD=0.62;ReadPosRankSum=-0.178;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,99:230:99:172,0,624 chrXIV 11985 . C T 1521 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=78;QD=5.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:1554,177,0 chrXIV 12000 . A G 2709 filter AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=17.59;MQ0=76;QD=7.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,342:346:99:2742,312,0 chrXIV 12030 . G A 1281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.577;DP=451;Dels=0.00;FS=0.000;HaplotypeScore=10.0818;MLEAC=1;MLEAF=0.500;MQ=18.32;MQ0=103;MQRankSum=-2.204;QD=2.84;ReadPosRankSum=0.983;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:238,211:451:99:1311,0,1717 chrXIV 12066 . C T 333.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;DP=424;Dels=0.00;FS=0.000;HaplotypeScore=26.5963;MLEAC=1;MLEAF=0.500;MQ=17.21;MQ0=156;MQRankSum=-1.306;QD=0.79;ReadPosRankSum=-0.549;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:327,96:424:99:363,0,2003 chrXIV 12484 . G T 230 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.36;MQ0=130;QD=1.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,156:156:30:263,30,0 chrXIV 12487 . A G 195.01 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.13;MQ0=128;QD=1.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,150:152:27:228,27,0 chrXIV 12731 . T C 2661 filter AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.72;MQ0=117;QD=9.86;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,268:270:99:2694,309,0 chrXIV 12754 . C T 2420 filter AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=17.70;MQ0=123;QD=8.96;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,269:270:99:2453,276,0 chrXIV 12847 . T C 2549 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.892;DP=352;Dels=0.00;FS=24.122;HaplotypeScore=11.6039;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=109;MQRankSum=-3.294;QD=7.24;ReadPosRankSum=3.090;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:4,342:352:99:2582,273,0 chrXIV 12855 . A G 2501 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;DP=369;Dels=0.00;FS=53.547;HaplotypeScore=16.7702;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=103;MQRankSum=3.978;QD=6.78;ReadPosRankSum=-0.042;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:47,321:369:99:2534,113,0 chrXIV 12930 . G A 4212.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=2;QD=16.92;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:4212,483,0 chrXIV 12941 . A G 3946.01 filter AC=2;AF=1.00;AN=2;DP=234;Dels=0.01;FS=0.000;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=5;QD=16.86;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:3946,450,0 chrXIV 12971 . A G 2732 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.644;DP=179;Dels=0.00;FS=11.415;HaplotypeScore=99.6901;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=6;MQRankSum=2.150;QD=15.26;ReadPosRankSum=3.745;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:5,172:179:99:2765,321,0 chrXIV 13011 . C T 1472 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=59;MQRankSum=0.197;QD=10.01;ReadPosRankSum=1.693;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:99:1505,177,0 chrXIV 13014 . C T 1624 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=62;QD=10.97;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1657,183,0 chrXIV 13156 . C T 171.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;DP=146;Dels=0.00;FS=12.512;HaplotypeScore=4.7072;MLEAC=1;MLEAF=0.500;MQ=27.76;MQ0=9;MQRankSum=0.351;QD=1.17;ReadPosRankSum=-5.188;SB=-6.628e-03 GT:AD:DP:GQ:PL 0/1:134,11:146:43:201,0,43 chrXIV 13158 . C T 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.263;DP=146;Dels=0.00;FS=22.004;HaplotypeScore=7.9413;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=9;MQRankSum=-0.500;QD=0.79;ReadPosRankSum=-4.411;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,8:146:99:145,0,114 chrXIV 13160 . C T 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.904;DP=145;Dels=0.00;FS=29.563;HaplotypeScore=9.9228;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=9;MQRankSum=-0.298;QD=0.31;ReadPosRankSum=-4.500;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,9:145:75:75,0,167 chrXIV 13162 . C T 166.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=9;QD=1.15;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:24:199,24,0 chrXIV 13181 . T C 1989 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=9;QD=17.92;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2022,231,0 chrXIV 13209 . G T 752 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=10;QD=12.97;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:93:785,93,0 chrXIV 13218 . A G 564 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=11;MQRankSum=2.175;QD=12.00;ReadPosRankSum=2.314;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,45:47:69:597,69,0 chrXIV 13260 . G A 307 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=12.90;MQ0=79;QD=2.48;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:4,119:124:39:340,39,0 chrXIV 13308 . A G 1037 filter AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.64;MQ0=130;QD=4.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:1070,123,0 chrXIV 13380 . T C 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.064;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=1;MLEAF=0.500;MQ=13.22;MQ0=67;MQRankSum=-0.042;QD=1.15;ReadPosRankSum=1.968;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,52:107:99:153,0,142 chrXIV 13789 . T C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=115;MQRankSum=-0.085;QD=0.07;ReadPosRankSum=1.778;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:194,60:254:47:47,0,2054 chrXIV 13800 . A C 1783.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.069;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=19.78;MQ0=138;MQRankSum=1.431;QD=6.94;ReadPosRankSum=-2.905;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,188:257:44:1813,0,44 chrXIV 13905 . A T 2252 filter AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=15.17;MQ0=185;QD=7.66;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:106,187:294:99:2285,258,0 chrXIV 13989 . A G 4162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;DP=394;Dels=0.00;FS=20.984;HaplotypeScore=15.3436;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=82;MQRankSum=4.086;QD=10.56;ReadPosRankSum=-0.661;SB=-2.457e+03 GT:AD:DP:GQ:PL 0/1:119,274:394:99:4162,0,120 chrXIV 14055 . G A 934 filter AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=19.51;MQ0=132;QD=4.92;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,190:190:99:967,114,0 chrXIV 14062 . A G 523 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.688;DP=153;Dels=0.00;FS=48.316;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.97;MQ0=124;MQRankSum=-1.050;QD=3.42;ReadPosRankSum=3.473;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,147:153:63:556,63,0 chrXIV 14163 . G A 2330 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.115;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=21.9184;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=67;MQRankSum=1.038;QD=10.40;ReadPosRankSum=1.340;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:42,182:224:99:2363,207,0 chrXIV 14487 . G A 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.715;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=8.70;MQ0=45;MQRankSum=1.222;QD=0.76;ReadPosRankSum=-1.365;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:6,53:59:9:77,9,0 chrXIV 15095 . T C 88.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.13;MQ0=100;MQRankSum=0.537;QD=0.79;ReadPosRankSum=2.041;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:4,108:112:15:121,15,0 chrXIV 15155 . T C 67.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=9.63;MQ0=55;MQRankSum=0.544;QD=0.75;ReadPosRankSum=3.189;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,82:90:12:100,12,0 chrXIV 15245 . A T 5358.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=13.9140;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=105;QD=13.99;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,383:383:99:5358,647,0 chrXIV 15329 . C T 897.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.089;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.1868;MLEAC=1;MLEAF=0.500;MQ=15.67;MQ0=97;MQRankSum=-0.205;QD=3.87;ReadPosRankSum=0.108;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:131,97:232:99:927,0,1079 chrXIV 15431 . C T 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.708;DP=333;Dels=0.00;FS=2.413;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=15.16;MQ0=145;MQRankSum=-5.894;QD=0.38;ReadPosRankSum=-3.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,88:333:99:157,0,1888 chrXIV 15707 . C T 149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=31.4925;MLEAC=1;MLEAF=0.500;MQ=14.16;MQ0=119;MQRankSum=0.402;QD=0.71;ReadPosRankSum=-4.335;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,43:211:99:179,0,636 chrXIV 15898 . G T 273.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.454;DP=222;Dels=0.00;FS=81.181;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=67;MQRankSum=-4.772;QD=1.23;ReadPosRankSum=-2.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,47:222:99:303,0,1991 chrXIV 16112 . C A 2524 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.03;FS=0.000;HaplotypeScore=15.1754;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.39;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2557,285,0 chrXIV 16184 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.53;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2292,252,0 chrXIV 16234 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.60;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1610,186,0 chrXIV 16343 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.56;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3655,423,0 chrXIV 16367 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.86;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3296,363,0 chrXIV 16379 . A T 2988 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.92;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3021,336,0 chrXIV 16445 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=132;Dels=0.00;FS=2.544;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.076;QD=19.89;ReadPosRankSum=2.947;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2659,300,0 chrXIV 16517 . C T 403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;DP=232;Dels=0.00;FS=93.227;HaplotypeScore=6.3874;MLEAC=1;MLEAF=0.500;MQ=51.60;MQ0=0;MQRankSum=-8.735;QD=1.74;ReadPosRankSum=3.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,47:232:99:433,0,3477 chrXIV 16586 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.018;DP=218;Dels=0.00;FS=9.664;HaplotypeScore=18.7381;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.401;QD=21.16;ReadPosRankSum=4.044;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:6,210:218:99:4613,534,0 chrXIV 16684 . A G 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.622;DP=239;Dels=0.00;FS=63.808;HaplotypeScore=15.7553;MLEAC=1;MLEAF=0.500;MQ=50.93;MQ0=0;MQRankSum=-8.550;QD=0.25;ReadPosRankSum=0.150;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:201,35:239:90:90,0,4270 chrXIV 16685 . A C 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.668;DP=239;Dels=0.00;FS=66.988;HaplotypeScore=18.9100;MLEAC=1;MLEAF=0.500;MQ=50.93;MQ0=0;MQRankSum=-8.874;QD=0.18;ReadPosRankSum=0.465;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,35:239:73:73,0,4164 chrXIV 16709 . T C 88.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;DP=226;Dels=0.00;FS=88.165;HaplotypeScore=5.8300;MLEAC=1;MLEAF=0.500;MQ=50.83;MQ0=0;MQRankSum=-8.755;QD=0.39;ReadPosRankSum=2.567;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,38:226:99:118,0,3545 chrXIV 16712 . T A 180.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;DP=227;Dels=0.00;FS=63.369;HaplotypeScore=5.8300;MLEAC=1;MLEAF=0.500;MQ=50.64;MQ0=0;MQRankSum=-9.344;QD=0.79;ReadPosRankSum=2.375;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,40:227:99:210,0,3658 chrXIV 16715 . T C 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.544;DP=232;Dels=0.00;FS=66.475;HaplotypeScore=14.7401;MLEAC=1;MLEAF=0.500;MQ=50.35;MQ0=0;MQRankSum=-9.058;QD=0.70;ReadPosRankSum=2.046;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,41:232:99:193,0,3413 chrXIV 16721 . T G 4427.01 SnpCluster AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.0733;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=19.50;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4427,507,0 chrXIV 16724 . G A,C 3858.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.547;DP=223;Dels=0.00;FS=23.464;HaplotypeScore=11.7189;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.30;MQ0=0;MQRankSum=2.107;QD=17.30;ReadPosRankSum=1.498;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/2:3,185,35:223:99:3858,488,106,3332,0,3298 chrXIV 16727 . C T 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.646;DP=227;Dels=0.00;FS=70.489;HaplotypeScore=12.9196;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=0;MQRankSum=-7.984;QD=0.43;ReadPosRankSum=2.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:193,34:227:99:128,0,3228 chrXIV 16739 . A C 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.711;DP=222;Dels=0.00;FS=64.217;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=47.72;MQ0=0;MQRankSum=-8.110;QD=0.22;ReadPosRankSum=-0.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,33:222:79:79,0,3331 chrXIV 16801 . T C 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=219;Dels=0.00;FS=6.944;HaplotypeScore=23.1212;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;MQRankSum=2.353;QD=19.23;ReadPosRankSum=3.465;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:5,213:219:99:4212,495,0 chrXIV 16958 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=21.13;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3118,339,0 chrXIV 17243 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=11.3198;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.42;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3010,348,0 chrXIV 17342 . A G 2860 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=16.6398;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.45;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2893,339,0 chrXIV 17759 . T C 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.393;QD=21.14;ReadPosRankSum=1.686;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1640,186,0 chrXIV 17835 . A G 1842 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.46;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1875,210,0 chrXIV 18019 . A T 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=5.274;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.704;QD=24.10;ReadPosRankSum=1.651;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3142,345,0 chrXIV 18046 . T C 2877 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.30;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2910,333,0 chrXIV 18787 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.35;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3442,375,0 chrXIV 18838 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.25;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2423,270,0 chrXIV 19306 . C A 2670 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.70;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2703,297,0 chrXIV 19354 . T G 2004 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.56;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2037,237,0 chrXIV 19419 . T C 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.228;QD=22.45;ReadPosRankSum=1.701;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2502,294,0 chrXIV 19524 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.16;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2395,267,0 chrXIV 19598 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.90;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3148,357,0 chrXIV 19703 . A G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.008;QD=20.86;ReadPosRankSum=2.417;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3225,366,0 chrXIV 19742 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.07;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3350,381,0 chrXIV 19918 . T C 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.546;DP=198;Dels=0.00;FS=7.982;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=2.995;QD=22.23;ReadPosRankSum=3.810;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:5,191:198:99:4402,504,0 chrXIV 20018 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=4.159;HaplotypeScore=14.2462;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.822;QD=21.86;ReadPosRankSum=1.645;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4329,507,0 chrXIV 20120 . G T 2412 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.17;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2445,270,0 chrXIV 20559 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3046,348,0 chrXIV 21301 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.262;QD=20.67;ReadPosRankSum=1.706;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2782,318,0 chrXIV 21317 . A C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.460;QD=20.36;ReadPosRankSum=1.705;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,128:134:99:2761,312,0 chrXIV 21401 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.42;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2872,333,0 chrXIV 21820 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5895;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.59;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3170,354,0 chrXIV 21905 . C G 3454.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3454,399,0 chrXIV 21949 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;DP=152;Dels=0.00;FS=11.011;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.899;QD=21.02;ReadPosRankSum=2.913;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3228,375,0 chrXIV 21982 . G T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.79;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3442,393,0 chrXIV 22021 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=159;Dels=0.00;FS=7.415;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.549;QD=22.88;ReadPosRankSum=2.357;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3638,414,0 chrXIV 22090 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.69;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3243,363,0 chrXIV 22397 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3093,339,0 chrXIV 22855 . A G 2489 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2305;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2522,300,0 chrXIV 23459 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.1580;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.99;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3267,363,0 chrXIV 23540 . A G 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.656;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.848;QD=20.88;ReadPosRankSum=1.888;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2664,300,0 chrXIV 23613 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.82;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2649,291,0 chrXIV 23657 . G A 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.859;DP=152;Dels=0.00;FS=13.676;HaplotypeScore=11.8488;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;MQRankSum=-0.823;QD=10.65;ReadPosRankSum=0.167;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:1652,180,0 chrXIV 23823 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.058;DP=114;Dels=0.00;FS=3.041;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.751;QD=20.68;ReadPosRankSum=2.297;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2390,273,0 chrXIV 23875 . T G 2201 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.96;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2234,258,0 chrXIV 23987 . A C 3187 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.43;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3220,369,0 chrXIV 24116 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.97;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3332,378,0 chrXIV 24221 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=2.894;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.013;QD=22.64;ReadPosRankSum=2.349;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3872,432,0 chrXIV 24616 . G T 3066 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.58;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3099,354,0 chrXIV 24641 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.16;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3137,348,0 chrXIV 24857 . G T 3042 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.04;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3075,339,0 chrXIV 24871 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.78;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3088,342,0 chrXIV 24910 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.5323;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.51;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2916,318,0 chrXIV 25077 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.3292;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.28;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3542,396,0 chrXIV 25137 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.94;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2943,339,0 chrXIV 25196 . C T 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.357;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.982;QD=19.04;ReadPosRankSum=1.415;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2337,248,0 chrXIV 25369 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=194;Dels=0.00;FS=2.480;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.266;QD=23.47;ReadPosRankSum=2.932;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4553,516,0 chrXIV 25410 . A C 5283.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.20;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5283,615,0 chrXIV 25651 . T C 4329.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=17.25;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,248:251:99:4329,498,0 chrXIV 25935 . G A 6268.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6268,687,0 chrXIV 26041 . A T 5665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=264;Dels=0.00;FS=3.018;HaplotypeScore=25.1446;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.051;QD=21.46;ReadPosRankSum=2.375;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:2,262:264:99:5665,618,0 chrXIV 26408 . G A 5188.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.0077;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.69;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5188,579,0 chrXIV 26953 . T C 4602.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.67;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4602,519,0 chrXIV 26963 . C T 4315.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.07;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4315,480,0 chrXIV 27283 . T C 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.152;QD=21.72;ReadPosRankSum=1.672;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1271,147,0 chrXIV 27347 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.42;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1490,171,0 chrXIV 27863 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.178;QD=22.13;ReadPosRankSum=1.710;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3452,393,0 chrXIV 27917 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.39;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3190,351,0 chrXIV 28026 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.98;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3020,327,0 chrXIV 28602 . T A 1250 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.32;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1283,141,0 chrXIV 28617 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.76;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1341,153,0 chrXIV 28792 . G T 3104 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.63;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3137,351,0 chrXIV 28889 . A G 2299 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.90;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2332,273,0 chrXIV 29547 . A G 2399 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2432,276,0 chrXIV 29951 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.51;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3832,429,0 chrXIV 29975 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.651;QD=20.21;ReadPosRankSum=1.712;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3456,399,0 chrXIV 29984 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.86;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,168:173:99:3436,396,0 chrXIV 30032 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.319;QD=17.71;ReadPosRankSum=1.686;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2725,321,0 chrXIV 30413 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.37;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3583,390,0 chrXIV 30527 . A T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.13;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4256,468,0 chrXIV 30578 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.3059;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.04;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3940,429,0 chrXIV 31088 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2170,252,0 chrXIV 31190 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.027;QD=22.59;ReadPosRankSum=1.714;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4405,498,0 chrXIV 31388 . G C 2043 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2076,231,0 chrXIV 31443 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2189,255,0 chrXIV 31680 . T C 1765 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.18;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1798,207,0 chrXIV 32265 . C G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.40;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3539,408,0 chrXIV 32285 . A G 3083 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.83;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3116,369,0 chrXIV 32654 . A G 3092 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3125,366,0 chrXIV 33086 . A G 1037 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.20;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1070,123,0 chrXIV 33230 . T A 274 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=14.42;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:36:307,36,0 chrXIV 33272 . G A 549 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.12;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:69:582,69,0 chrXIV 33359 . G A 2711 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2744,300,0 chrXIV 33540 . A G 7400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=320;Dels=0.00;FS=4.981;HaplotypeScore=16.6524;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.373;QD=23.13;ReadPosRankSum=1.688;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:1,318:320:99:7400,872,0 chrXIV 33948 . C T 6969.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=18.6008;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.05;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:6969,783,0 chrXIV 34134 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.12;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2806,324,0 chrXIV 34193 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.80;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2759,306,0 chrXIV 34396 . T G 1133 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1166,132,0 chrXIV 34477 . G A 242 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=12.74;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:275,33,0 chrXIV 34497 . G A 541 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=9.6722;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=15.46;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,32:35:66:574,66,0 chrXIV 34590 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.94;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1722,186,0 chrXIV 34608 . A G 1374 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.08;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1407,159,0 chrXIV 34630 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.68;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1642,192,0 chrXIV 34917 . A G 5880.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.70;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:5880,684,0 chrXIV 35280 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.40;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3317,381,0 chrXIV 35805 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3367,363,0 chrXIV 36225 . T C 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.627;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.405;QD=20.53;ReadPosRankSum=1.708;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2928,320,0 chrXIV 36273 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=155;Dels=0.00;FS=8.529;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.359;QD=20.69;ReadPosRankSum=2.370;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3240,381,0 chrXIV 36502 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.1331;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.51;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4209,465,0 chrXIV 36996 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=209;Dels=0.00;FS=10.348;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.168;QD=22.17;ReadPosRankSum=2.957;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:4634,534,0 chrXIV 37063 . A G 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=190;Dels=0.00;FS=2.571;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.085;QD=20.53;ReadPosRankSum=2.910;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:3901,447,0 chrXIV 37468 . T G 1386 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.2652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1419,165,0 chrXIV 37581 . C G 2115 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2148,243,0 chrXIV 37632 . A C 2504 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2537,291,0 chrXIV 37986 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=187;Dels=0.00;FS=4.387;HaplotypeScore=8.0960;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.563;QD=21.24;ReadPosRankSum=1.694;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,183:187:99:3971,462,0 chrXIV 38156 . T C 2463 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.6527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2496,285,0 chrXIV 38326 . T C 2904 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.03;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2937,333,0 chrXIV 38446 . G C 1520 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.35;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1553,180,0 chrXIV 38637 . T C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.750;QD=22.40;ReadPosRankSum=1.681;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1534,177,0 chrXIV 38673 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.5871;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.53;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1385,153,0 chrXIV 38738 . T C 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.231;QD=22.80;ReadPosRankSum=1.690;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1925,216,0 chrXIV 38764 . A T 2288 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.59;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2321,258,0 chrXIV 38920 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.29;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2665,291,0 chrXIV 39122 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=117;Dels=0.00;FS=2.976;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.074;QD=22.81;ReadPosRankSum=2.408;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2702,312,0 chrXIV 39181 . C T 2416 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2449,276,0 chrXIV 39282 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.63;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2609,288,0 chrXIV 39421 . A G 3140 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.75;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3173,357,0 chrXIV 39499 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.71;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2311,270,0 chrXIV 39652 . A G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.3706;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.682;QD=21.08;ReadPosRankSum=1.706;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2858,330,0 chrXIV 39817 . A G 3143 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.09;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3176,366,0 chrXIV 40397 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.83;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1867,216,0 chrXIV 40528 . A G 2424 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0193;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2457,279,0 chrXIV 40852 . A C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.8114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.135;QD=21.37;ReadPosRankSum=0.393;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,170:175:99:3739,432,0 chrXIV 41056 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.073;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0216;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.094;QD=22.16;ReadPosRankSum=0.619;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3679,400,0 chrXIV 41218 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.89;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4180,456,0 chrXIV 42031 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.2436;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.09;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2242,249,0 chrXIV 42185 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1690,192,0 chrXIV 42296 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.5227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3749,423,0 chrXIV 42360 . A G 3182 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.93;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3215,375,0 chrXIV 42499 . T C 4803.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.0696;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.66;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4803,555,0 chrXIV 42594 . A T 2740 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.41;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2773,303,0 chrXIV 42721 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.32;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3452,384,0 chrXIV 42804 . T C 2660 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.15;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2693,309,0 chrXIV 42814 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.74;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2698,309,0 chrXIV 42842 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.63;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3065,339,0 chrXIV 43148 . A C 1037 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.57;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1070,123,0 chrXIV 43155 . T C 908 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.46;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:941,105,0 chrXIV 43322 . C G 628 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=16.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:661,78,0 chrXIV 43402 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.08;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2128,237,0 chrXIV 43561 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.27;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4047,477,0 chrXIV 43576 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.9299;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.58;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3955,435,0 chrXIV 43749 . C G 4783.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.07;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4783,546,0 chrXIV 43810 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=178;Dels=0.00;FS=2.434;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.714;QD=19.53;ReadPosRankSum=2.914;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,173:178:99:3476,405,0 chrXIV 43912 . C T 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.172;DP=131;Dels=0.00;FS=4.418;HaplotypeScore=12.5066;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.705;QD=21.16;ReadPosRankSum=0.826;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2805,324,0 chrXIV 44216 . A G 2853 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2886,324,0 chrXIV 44535 . A G 6130.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=12.7238;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.62;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6130,696,0 chrXIV 44605 . A G 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.5189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.886;QD=21.30;ReadPosRankSum=1.683;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4537,525,0 chrXIV 44757 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=4.018;HaplotypeScore=17.9328;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.035;QD=19.63;ReadPosRankSum=1.691;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3337,387,0 chrXIV 45224 . T C 2569 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.15;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2602,297,0 chrXIV 45407 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.80;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2350,267,0 chrXIV 45410 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.72;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2354,267,0 chrXIV 45479 . G T 3074 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=18.08;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3107,345,0 chrXIV 45497 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=179;Dels=0.00;FS=5.819;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.531;QD=17.12;ReadPosRankSum=2.927;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3098,360,0 chrXIV 45634 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.17;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2695,297,0 chrXIV 45693 . G C 3068 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.76;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3101,354,0 chrXIV 46130 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3620,393,0 chrXIV 46179 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3274,369,0 chrXIV 46250 . C T 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.801;QD=21.29;ReadPosRankSum=-0.682;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2418,229,0 chrXIV 46489 . A G 2162 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2195,249,0 chrXIV 46554 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.2796;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.71;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2539,273,0 chrXIV 46706 . G C 3733.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.93;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3733,423,0 chrXIV 46872 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=180;Dels=0.00;FS=2.766;HaplotypeScore=11.8668;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.130;QD=20.66;ReadPosRankSum=2.395;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3718,438,0 chrXIV 46932 . T G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.196;DP=167;Dels=0.00;FS=9.176;HaplotypeScore=20.5445;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.363;QD=21.40;ReadPosRankSum=3.354;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:4,162:167:99:3573,414,0 chrXIV 47000 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.000;QD=22.07;ReadPosRankSum=1.675;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4060,471,0 chrXIV 47216 . G A 4141.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.38;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4141,453,0 chrXIV 47294 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.793;DP=177;Dels=0.00;FS=3.237;HaplotypeScore=9.8220;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.930;QD=20.75;ReadPosRankSum=-0.969;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3673,402,0 chrXIV 47308 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.169;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.5394;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.655;QD=20.10;ReadPosRankSum=1.289;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:3698,401,0 chrXIV 47497 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=163;Dels=0.00;FS=12.306;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.685;QD=22.36;ReadPosRankSum=2.957;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3644,411,0 chrXIV 47746 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3060,339,0 chrXIV 48338 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.3587;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=19.78;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3501,390,0 chrXIV 48348 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=18.25;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3340,390,0 chrXIV 48359 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=18.14;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3172,351,0 chrXIV 48383 . G C 2650 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=15.87;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:2683,315,0 chrXIV 48389 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=16.52;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2610,285,0 chrXIV 48399 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8740;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=14.81;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2254,258,0 chrXIV 48463 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.64;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2823,306,0 chrXIV 48523 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3571;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.39;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2764,309,0 chrXIV 49325 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.81;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2604,285,0 chrXIV 49356 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.460;QD=21.63;ReadPosRankSum=1.693;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1958,222,0 chrXIV 49577 . G A 2106 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2139,234,0 chrXIV 49660 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.555;DP=86;Dels=0.00;FS=2.588;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.578;QD=20.24;ReadPosRankSum=2.917;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:3,81:86:99:1774,198,0 chrXIV 50094 . T A 2484 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.18;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2517,276,0 chrXIV 50444 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.4872;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.90;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3614,414,0 chrXIV 50710 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=23.18;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3070,339,0 chrXIV 50736 . A G 2881 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=21.03;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2914,327,0 chrXIV 50745 . T A 2724 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.45;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2757,315,0 chrXIV 51050 . C A 2284 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.96;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2317,258,0 chrXIV 51082 . T A 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=121;Dels=0.00;FS=5.326;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.008;QD=23.45;ReadPosRankSum=2.909;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2870,312,0 chrXIV 51201 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.320;QD=22.41;ReadPosRankSum=2.384;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3361,387,0 chrXIV 51708 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.931;QD=22.48;ReadPosRankSum=1.712;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3912,438,0 chrXIV 52243 . C T 5156.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.7996;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.13;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5156,567,0 chrXIV 52325 . G A 5885.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.55;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5885,637,0 chrXIV 52327 . T C 5641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=263;Dels=0.00;FS=2.966;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.917;QD=21.45;ReadPosRankSum=2.431;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:2,259:263:99:5641,639,0 chrXIV 52596 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.01;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3704,426,0 chrXIV 52645 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.13;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3463,393,0 chrXIV 52659 . G T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=20.03;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3405,387,0 chrXIV 52850 . C G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.8263;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.79;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3347,384,0 chrXIV 53465 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.88;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4092,459,0 chrXIV 53556 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=204;Dels=0.00;FS=9.629;HaplotypeScore=15.9670;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.599;QD=15.72;ReadPosRankSum=2.425;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,200:204:99:3239,384,0 chrXIV 53675 . T C 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=229;Dels=0.00;FS=8.983;HaplotypeScore=19.7376;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.715;QD=21.38;ReadPosRankSum=3.361;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:4,224:229:99:4896,564,0 chrXIV 53756 . G A 6503.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.84;SB=-3.696e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:6503,756,0 chrXIV 53897 . G T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.9970;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.09;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3860,426,0 chrXIV 54090 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4762;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.797;QD=23.82;ReadPosRankSum=1.682;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3287,375,0 chrXIV 54162 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2987,327,0 chrXIV 54428 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.39;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2473,273,0 chrXIV 54509 . T C 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.253;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.551;QD=20.60;ReadPosRankSum=1.678;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2691,309,0 chrXIV 54694 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=2.574;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.083;QD=23.02;ReadPosRankSum=2.404;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3752,423,0 chrXIV 54935 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.93;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2731,312,0 chrXIV 54965 . T A 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.133;QD=22.78;ReadPosRankSum=1.632;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2402,273,0 chrXIV 54995 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=132;Dels=0.00;FS=3.080;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.440;QD=19.46;ReadPosRankSum=1.677;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,125:132:99:2602,303,0 chrXIV 55037 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.74;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3282,390,0 chrXIV 55235 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.65;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3291,384,0 chrXIV 55310 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.94;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2693,294,0 chrXIV 55359 . T C 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=1.088;QD=19.22;ReadPosRankSum=1.705;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2512,285,0 chrXIV 55368 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.35;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2882,315,0 chrXIV 55790 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=19.0008;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.47;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3268,366,0 chrXIV 55900 . A G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4584;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.488;QD=20.23;ReadPosRankSum=1.659;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2906,333,0 chrXIV 55925 . T G 2868 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.24;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2901,339,0 chrXIV 56021 . G T 1021 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.42;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1054,117,0 chrXIV 56025 . C T 1065 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=22.19;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1098,117,0 chrXIV 56069 . G C 553 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.07;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:69:586,69,0 chrXIV 56281 . A G 96.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=64.19;MQ0=0;QD=19.25;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:129,15,0 chrXIV 56359 . T A 614 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.74;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:72:647,72,0 chrXIV 56665 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.98;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2649,303,0 chrXIV 57439 . G T 2667 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.51;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2700,303,0 chrXIV 57579 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.85;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3588,396,0 chrXIV 57838 . A G 5556.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.96;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5556,627,0 chrXIV 57896 . C T 5622.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.67;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5622,618,0 chrXIV 57930 . G A 4896.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.1200;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.67;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4896,543,0 chrXIV 58009 . G T 5293.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.52;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5293,603,0 chrXIV 58013 . G A 4998.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.32;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4998,576,0 chrXIV 58106 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.9642;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.15;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4103,462,0 chrXIV 58117 . A G 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.026;DP=192;Dels=0.00;FS=10.810;HaplotypeScore=12.4868;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.927;QD=19.82;ReadPosRankSum=4.041;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:6,185:192:99:3806,438,0 chrXIV 58193 . G A 4943.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.67;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4943,552,0 chrXIV 58317 . T C 4932.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.94;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4932,564,0 chrXIV 58553 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=199;Dels=0.00;FS=12.517;HaplotypeScore=15.3519;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.260;QD=20.53;ReadPosRankSum=1.791;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,194:199:99:4086,474,0 chrXIV 58685 . T C 2286 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.41;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2319,273,0 chrXIV 58697 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.23;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2256,252,0 chrXIV 58742 . G C 1956 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.49;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1989,231,0 chrXIV 59378 . G A 6639.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=18.8914;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.43;SB=-3.318e+03 GT:AD:DP:GQ:PL 1/1:0,293:296:99:6639,738,0 chrXIV 59823 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.0441;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.99;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3119,357,0 chrXIV 59998 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=18.25;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2625,285,0 chrXIV 59999 . C A 2645 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=18.50;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2678,294,0 chrXIV 60029 . T C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;MQRankSum=-1.631;QD=14.85;ReadPosRankSum=1.707;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2067,234,0 chrXIV 60034 . A T 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=7.238;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;MQRankSum=0.026;QD=14.20;ReadPosRankSum=2.415;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2049,228,0 chrXIV 60050 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=13.17;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1772,201,0 chrXIV 60096 . A G 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=0.120;QD=14.64;ReadPosRankSum=1.708;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2171,246,0 chrXIV 60098 . G C 2142 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.77;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2175,249,0 chrXIV 60302 . C T 6633.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=11.7130;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.69;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6633,747,0 chrXIV 60608 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.649;DP=194;Dels=0.00;FS=5.918;HaplotypeScore=21.6273;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.262;QD=20.26;ReadPosRankSum=2.890;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:3,189:194:99:3931,465,0 chrXIV 60667 . C T 4536.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.02;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4536,510,0 chrXIV 60881 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.08;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3489,408,0 chrXIV 60974 . G C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3785,426,0 chrXIV 61007 . C T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4413,492,0 chrXIV 61469 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.34;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3165,345,0 chrXIV 61714 . G C 1179 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.71;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1212,144,0 chrXIV 61741 . T C 1225 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.12;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1258,141,0 chrXIV 62457 . G A 2730 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.33;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2763,318,0 chrXIV 62535 . T A 2788 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=122.7716;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=19.23;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2821,324,0 chrXIV 62564 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.64;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1815,201,0 chrXIV 62649 . A G 2325 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.95;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2358,273,0 chrXIV 62825 . A T 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=110;Dels=0.00;FS=6.897;HaplotypeScore=10.2253;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.168;QD=20.25;ReadPosRankSum=2.405;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2260,246,0 chrXIV 62842 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.21;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2280,261,0 chrXIV 63085 . T A 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=1.099;QD=23.26;ReadPosRankSum=1.713;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4350,483,0 chrXIV 63141 . A T 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.616;DP=110;Dels=0.00;FS=12.211;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;MQRankSum=-2.038;QD=20.19;ReadPosRankSum=3.688;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:5,105:110:99:2254,252,0 chrXIV 63142 . A T 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=3.038;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=-0.391;QD=20.08;ReadPosRankSum=2.379;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2121,246,0 chrXIV 63174 . G C 3022 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8221;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.74;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3055,348,0 chrXIV 63207 . T G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.85;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3714,432,0 chrXIV 63313 . G T 2992 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.81;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3025,333,0 chrXIV 63361 . G T 248.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.978;DP=112;Dels=0.00;FS=5.117;HaplotypeScore=166.6077;MLEAC=1;MLEAF=0.500;MQ=34.08;MQ0=0;MQRankSum=-0.803;QD=2.21;ReadPosRankSum=-1.864;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:77,35:112:96:278,0,96 chrXIV 63403 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=12.48;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1406,156,0 chrXIV 63687 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=157;Dels=0.00;FS=2.952;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.252;QD=20.88;ReadPosRankSum=2.387;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3278,375,0 chrXIV 64611 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.62;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2442,267,0 chrXIV 64800 . G T 1685 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1718,192,0 chrXIV 65227 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.172;DP=119;Dels=0.00;FS=2.974;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.567;QD=19.55;ReadPosRankSum=2.386;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,113:119:99:2360,270,0 chrXIV 65648 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.66;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2628,291,0 chrXIV 65652 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=3.114;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-1.241;QD=19.40;ReadPosRankSum=1.678;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2497,291,0 chrXIV 66215 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.21;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3691,402,0 chrXIV 66462 . G T 2693 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.5411;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.44;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2726,300,0 chrXIV 66492 . C A 2758 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.24;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2791,303,0 chrXIV 66837 . T C 4639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=220;Dels=0.00;FS=4.181;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.740;QD=21.09;ReadPosRankSum=1.512;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4639,534,0 chrXIV 66855 . C T 4521.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.63;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4521,498,0 chrXIV 66892 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.69;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3682,417,0 chrXIV 66955 . T A 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=159;Dels=0.00;FS=6.794;HaplotypeScore=7.0288;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.657;QD=23.30;ReadPosRankSum=2.388;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3705,405,0 chrXIV 66987 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.28;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3679,411,0 chrXIV 67066 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.10;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3941,438,0 chrXIV 67101 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.6664;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.94;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3648,405,0 chrXIV 67383 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.97;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3284,366,0 chrXIV 67417 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3305,354,0 chrXIV 67731 . T C 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=119;Dels=0.00;FS=3.048;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.636;QD=23.34;ReadPosRankSum=2.408;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2810,315,0 chrXIV 68040 . G C 2497 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.34;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2530,294,0 chrXIV 68221 . T A 2661 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.99;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2694,297,0 chrXIV 68234 . T A 2432 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.73;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2465,267,0 chrXIV 68498 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.22;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2237,249,0 chrXIV 68923 . T C 2746 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2779,318,0 chrXIV 69145 . A C 3398.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.24;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3398,390,0 chrXIV 69696 . C A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.23;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3446,381,0 chrXIV 69824 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.6555;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.16;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3520,387,0 chrXIV 69857 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.21;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3806,426,0 chrXIV 70114 . C T 5386.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.8511;MLEAC=2;MLEAF=1.00;MQ=62.18;MQ0=0;QD=21.54;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5386,603,0 chrXIV 70189 . G A 5518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=22.3703;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.597;QD=21.31;ReadPosRankSum=-0.673;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:2,255:259:99:5518,589,0 chrXIV 70291 . G A 6554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=20.8096;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.721;QD=21.56;ReadPosRankSum=0.762;SB=-3.886e+03 GT:AD:DP:GQ:PL 1/1:1,299:304:99:6554,726,0 chrXIV 70909 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.629;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.466;QD=21.83;ReadPosRankSum=1.684;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3155,363,0 chrXIV 71495 . T C 2483 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.6653;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.04;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2516,282,0 chrXIV 71623 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.74;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1816,207,0 chrXIV 71651 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.55;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1903,216,0 chrXIV 71660 . C A 1727 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.57;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1760,192,0 chrXIV 71751 . G C 1801 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.51;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1834,210,0 chrXIV 71784 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.56;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2819,303,0 chrXIV 72005 . T A 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=3.300;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.117;QD=23.31;ReadPosRankSum=1.676;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2924,321,0 chrXIV 72122 . T C 2925 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2958,333,0 chrXIV 72483 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.82;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2415,264,0 chrXIV 73212 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.654;DP=155;Dels=0.00;FS=5.965;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.412;QD=19.63;ReadPosRankSum=2.863;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3076,354,0 chrXIV 73224 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.57;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3264,372,0 chrXIV 73491 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.70;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2165,249,0 chrXIV 73791 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3960;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.26;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3736,423,0 chrXIV 74143 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.13;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3515,396,0 chrXIV 74211 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.62;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3329,381,0 chrXIV 74437 . T G 3057 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3090,354,0 chrXIV 74523 . A C 2405 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.12;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2438,282,0 chrXIV 74571 . A T 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.480;QD=23.82;ReadPosRankSum=1.638;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2653,291,0 chrXIV 74607 . T A 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=7.909;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.811;QD=21.84;ReadPosRankSum=2.356;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2894,318,0 chrXIV 74669 . T A 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=138;Dels=0.00;FS=9.620;HaplotypeScore=13.3507;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.228;QD=22.75;ReadPosRankSum=2.919;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:3173,351,0 chrXIV 75232 . C G 2724 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2757,312,0 chrXIV 75447 . A G 2517 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2550,291,0 chrXIV 75588 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3236,369,0 chrXIV 75636 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2826,312,0 chrXIV 75675 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3650,405,0 chrXIV 76137 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.238;DP=143;Dels=0.00;FS=8.089;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.108;QD=22.97;ReadPosRankSum=3.397;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:4,139:143:99:3285,378,0 chrXIV 76429 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3759,429,0 chrXIV 76856 . A T 5572.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.3593;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.02;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5572,627,0 chrXIV 77017 . A T 5704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.537;QD=21.36;ReadPosRankSum=1.719;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:5704,648,0 chrXIV 77179 . T C 4223.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.429;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-1.025;QD=21.55;ReadPosRankSum=1.661;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4223,483,0 chrXIV 77182 . G A 4216.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.29;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4216,465,0 chrXIV 77185 . T C 4163.01 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.61;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4163,483,0 chrXIV 77306 . T C 3684.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.29;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3684,417,0 chrXIV 77353 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.59;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4404,492,0 chrXIV 77407 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.8415;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.51;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3984,450,0 chrXIV 77473 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.49;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3228,369,0 chrXIV 77543 . T C 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=163;Dels=0.00;FS=9.123;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.978;QD=22.90;ReadPosRankSum=2.359;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3733,420,0 chrXIV 77910 . A T 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=120;Dels=0.00;FS=6.354;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.133;QD=20.27;ReadPosRankSum=2.409;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2465,273,0 chrXIV 77941 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=15.77;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1815,210,0 chrXIV 77956 . A G 1586 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=14.69;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1619,180,0 chrXIV 77972 . C T 1405 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=12.89;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1438,156,0 chrXIV 77977 . T C 1212 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.22;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1245,147,0 chrXIV 77980 . G A 1329 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=12.78;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1362,153,0 chrXIV 78004 . A G 1277 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=12.77;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1310,150,0 chrXIV 78023 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=14.85;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1563,168,0 chrXIV 78037 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=14.27;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1503,174,0 chrXIV 78115 . A G 2824 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.73;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2857,330,0 chrXIV 78242 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.92;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2857,315,0 chrXIV 78245 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.233;QD=20.17;ReadPosRankSum=1.706;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2736,309,0 chrXIV 78386 . C A 5023.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.50;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5023,546,0 chrXIV 79032 . A T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.97;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4175,459,0 chrXIV 79050 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.1162;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.20;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3778,435,0 chrXIV 79165 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.9482;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.844;QD=20.26;ReadPosRankSum=1.715;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4052,459,0 chrXIV 79183 . G T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=19.98;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4135,471,0 chrXIV 79205 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.23;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3554,396,0 chrXIV 79238 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8501;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=15.00;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2643,288,0 chrXIV 79250 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=13.81;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:2394,279,0 chrXIV 79325 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=159;Dels=0.00;FS=9.112;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.607;QD=18.63;ReadPosRankSum=3.403;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:4,153:159:99:2995,342,0 chrXIV 79763 . A G 2962 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2995,336,0 chrXIV 80071 . A T 4801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=18.1994;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.418;QD=24.01;ReadPosRankSum=2.069;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4801,528,0 chrXIV 80156 . A T 4376.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.03;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4376,486,0 chrXIV 80329 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.38;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4050,462,0 chrXIV 80375 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.66;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4396,492,0 chrXIV 80433 . C G 3898.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.07;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,180:185:99:3898,453,0 chrXIV 81575 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.09;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2706,300,0 chrXIV 81581 . T A 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.4424;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.437;QD=21.29;ReadPosRankSum=-0.363;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2801,309,0 chrXIV 81723 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2599,288,0 chrXIV 81857 . A C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.4442;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.721;QD=20.72;ReadPosRankSum=0.565;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2374,253,0 chrXIV 82092 . T C 2816 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.01;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2849,321,0 chrXIV 82362 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.33;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2226,249,0 chrXIV 82505 . G T 1983 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2016,231,0 chrXIV 82802 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.0875;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.88;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3658,399,0 chrXIV 83036 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.9164;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.40;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3012,342,0 chrXIV 83130 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.79;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3568,390,0 chrXIV 83228 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.09;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3537,387,0 chrXIV 83675 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.85;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3363,372,0 chrXIV 83714 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.8488;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.45;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3592,414,0 chrXIV 84424 . A G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=134;Dels=0.00;FS=9.219;HaplotypeScore=12.8468;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.903;QD=21.46;ReadPosRankSum=2.412;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2909,327,0 chrXIV 84464 . G C 3415.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.61;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3415,387,0 chrXIV 84484 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1373;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.49;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3644,423,0 chrXIV 84727 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=4.3849;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=18.04;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2974,330,0 chrXIV 84728 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=6.269;HaplotypeScore=5.9075;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=1.328;QD=17.67;ReadPosRankSum=2.357;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:2895,330,0 chrXIV 84877 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=3.176;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.108;QD=22.00;ReadPosRankSum=-1.516;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3542,380,0 chrXIV 84982 . C T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.8766;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.64;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4539,516,0 chrXIV 85225 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.174;QD=21.74;ReadPosRankSum=-1.548;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3696,408,0 chrXIV 85237 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=2.991;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.037;QD=21.26;ReadPosRankSum=2.405;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3550,405,0 chrXIV 85261 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.93;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3307,366,0 chrXIV 85300 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.88;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3094,342,0 chrXIV 85336 . A C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=137;Dels=0.00;FS=3.043;HaplotypeScore=12.2338;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.027;QD=20.28;ReadPosRankSum=2.413;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2811,333,0 chrXIV 85381 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0544;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.64;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2881,315,0 chrXIV 85405 . A G 2682 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.79;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2715,315,0 chrXIV 85712 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6917;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.685;QD=19.05;ReadPosRankSum=1.637;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:3525,405,0 chrXIV 85723 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.65;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3637,399,0 chrXIV 85801 . T C 2411 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.53;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2444,279,0 chrXIV 85831 . T A 1897 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.85;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1930,216,0 chrXIV 85971 . T C 1839 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.90;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1872,213,0 chrXIV 86037 . T C 612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=45;Dels=0.00;FS=5.740;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=0.269;QD=13.60;ReadPosRankSum=1.655;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:78:645,78,0 chrXIV 86042 . G T 631 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=16.61;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:664,72,0 chrXIV 86054 . C T 588 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=14.70;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:621,72,0 chrXIV 86180 . T C 2020 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.05;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2053,237,0 chrXIV 86282 . A G 2832 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.80;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2865,327,0 chrXIV 86514 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3907,435,0 chrXIV 86730 . A G 5852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=261;Dels=0.00;FS=3.375;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.299;QD=22.42;ReadPosRankSum=1.692;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:5852,669,0 chrXIV 87215 . A G 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.4441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.248;QD=20.96;ReadPosRankSum=1.701;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:4696,525,0 chrXIV 87864 . A T 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=2.823;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.943;QD=21.29;ReadPosRankSum=2.398;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3056,351,0 chrXIV 88013 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.63;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3234,372,0 chrXIV 88100 . C A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.3272;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.10;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4354,498,0 chrXIV 88950 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.32;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1322,144,0 chrXIV 88974 . T C 1167 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.44;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1200,138,0 chrXIV 89169 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=141;Dels=0.00;FS=8.888;HaplotypeScore=9.9429;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.270;QD=21.50;ReadPosRankSum=2.362;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3064,363,0 chrXIV 89494 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=8.712;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.312;QD=23.55;ReadPosRankSum=2.260;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3094,351,0 chrXIV 89776 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.94;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3466,384,0 chrXIV 89837 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=24.99;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3923,432,0 chrXIV 89883 . C A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=24.11;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3810,420,0 chrXIV 89959 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3382,393,0 chrXIV 89998 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=164;Dels=0.00;FS=3.038;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.530;QD=22.23;ReadPosRankSum=2.419;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:2,158:164:99:3646,408,0 chrXIV 90031 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.79;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3925,435,0 chrXIV 90251 . T G 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.518;QD=22.45;ReadPosRankSum=1.696;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4377,513,0 chrXIV 90414 . T C 5071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=231;Dels=0.00;FS=2.909;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.845;QD=21.95;ReadPosRankSum=2.363;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:2,226:231:99:5071,567,0 chrXIV 90644 . C T 7349.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.26;SB=-4.129e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:7349,810,0 chrXIV 90834 . C T 5947.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=23.3180;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.24;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:5947,660,0 chrXIV 90905 . C T 4226.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.82;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4226,465,0 chrXIV 90956 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.5925;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.27;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4810,528,0 chrXIV 91169 . G A 5078.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=19.0091;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.40;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5078,558,0 chrXIV 91563 . T C 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=90;Dels=0.00;FS=2.916;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.490;QD=21.82;ReadPosRankSum=2.394;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:2,86:90:99:1997,228,0 chrXIV 91989 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2524;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.044;QD=22.66;ReadPosRankSum=1.613;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3331,378,0 chrXIV 92116 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.136;QD=23.36;ReadPosRankSum=1.710;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3668,405,0 chrXIV 92476 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=4.003;HaplotypeScore=15.6487;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.737;QD=22.56;ReadPosRankSum=1.675;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:4128,471,0 chrXIV 92521 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=4.437;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.138;QD=21.14;ReadPosRankSum=1.692;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3720,441,0 chrXIV 94480 . T A 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.496;QD=23.20;ReadPosRankSum=1.685;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3411,378,0 chrXIV 94896 . A C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.925;QD=20.56;ReadPosRankSum=1.685;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1534,177,0 chrXIV 95222 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1785,201,0 chrXIV 95765 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=10.232;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.087;QD=20.42;ReadPosRankSum=2.423;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3757,444,0 chrXIV 96083 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3279,363,0 chrXIV 96181 . C A 5372.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,220:224:99:5372,603,0 chrXIV 96228 . C T 5000.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.7373;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.75;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5000,552,0 chrXIV 96406 . T C 3043 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.56;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3076,360,0 chrXIV 96482 . T C 3045 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=21.00;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3078,363,0 chrXIV 96640 . T G 12.31 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;DP=90;Dels=0.00;FS=7.404;HaplotypeScore=1.9788;MLEAC=1;MLEAF=0.500;MQ=8.15;MQ0=79;MQRankSum=1.296;QD=0.14;ReadPosRankSum=2.003;SB=-4.963e-02 GT:AD:DP:GQ:PL 0/1:88,2:90:17:42,0,17 chrXIV 101087 . G A 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.73;MQ0=0;QD=2.50;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:67,9,0 chrXIV 101089 . A C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.73;MQ0=0;QD=2.64;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:69,9,0 chrXIV 101093 . G T 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=2.40;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:68,9,0 chrXIV 101111 . G A 36.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.73;MQ0=0;QD=2.64;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:69,9,0 chrXIV 101123 . G A 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=0;QD=3.07;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:72,9,0 chrXIV 101126 . T A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=0;QD=3.16;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:70,9,0 chrXIV 101133 . T C 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=0;QD=3.27;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:68,9,0 chrXIV 101236 . G T 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.24;SB=-4.221e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrXIV 101242 . A C 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.24;SB=-4.221e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrXIV 101248 . G A 75.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=9.41;SB=-2.220e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:108,15,0 chrXIV 101268 . T C 210 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=2;QD=11.67;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:30:243,30,0 chrXIV 101270 . G A 214 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.76;MQ0=4;QD=10.70;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:30:247,30,0 chrXIV 101325 . G T 188.01 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.31;MQ0=27;QD=4.59;SB=-2.302e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:27:221,27,0 chrXIV 101393 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.81;MQ0=6;QD=3.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXIV 101412 . G T 32.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.50;MQ0=9;QD=2.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:9:65,9,0 chrXIV 101416 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.17;MQ0=10;QD=2.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:9:65,9,0 chrXIV 101438 . C T 157.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.78;MQ0=12;QD=7.48;SB=-6.477e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:24:190,24,0 chrXIV 101454 . T C 330 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=17.86;MQ0=21;QD=8.92;SB=-6.500e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:42:363,42,0 chrXIV 101505 . G A 319 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.09;MQ0=28;QD=7.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:43:39:352,39,0 chrXIV 101618 . T G 43.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.66;MQ0=4;QD=4.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:76,9,0 chrXIV 101623 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.93;MQ0=4;QD=3.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:6:57,6,0 chrXIV 101632 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=3;QD=6.57;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:78,9,0 chrXIV 101635 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=3;QD=6.57;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:78,9,0 chrXIV 101639 . A G 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=1;QD=12.59;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:108,12,0 chrXIV 101673 . G A 262 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=18.71;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:295,33,0 chrXIV 101674 . T C 256 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=18.29;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:289,33,0 chrXIV 101676 . T A 281 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=20.07;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:314,33,0 chrXIV 101689 . G A 269 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=19.21;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:302,33,0 chrXIV 101700 . G A 213.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.12;MQ0=0;QD=15.22;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:246,27,0 chrXIV 101701 . G A 207.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.12;MQ0=0;QD=14.79;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:240,27,0 chrXIV 101708 . T C 200.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=0;QD=12.50;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:233,27,0 chrXIV 101711 . C G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=1;QD=12.38;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,15:16:27:231,27,0 chrXIV 101712 . A G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=1;QD=12.38;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:27:231,27,0 chrXIV 101715 . G A 206.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=2;QD=10.84;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:2,17:19:27:239,27,0 chrXIV 101723 . T C 179.03 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=3;QD=8.95;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:3,17:20:24:212,24,0 chrXIV 101727 . A G 152.06 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.96;MQ0=4;QD=7.24;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:3,17:21:21:185,21,0 chrXIV 101735 . T A 74.51 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.24;MQ0=5;QD=3.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,15:20:12:107,12,0 chrXIV 102681 . C T 866 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=12.93;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:899,99,0 chrXIV 102697 . A T 1083 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;QD=13.05;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1116,129,0 chrXIV 102722 . A G 1481 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=15.43;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1514,177,0 chrXIV 102872 . T C 2184 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=23.48;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2217,249,0 chrXIV 102906 . A G 2094 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.04;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2127,240,0 chrXIV 103068 . C A 2424 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2457,270,0 chrXIV 103902 . T G 2660 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.28;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2693,315,0 chrXIV 104038 . A T 3154 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3187,348,0 chrXIV 104075 . T C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.133;QD=20.07;ReadPosRankSum=1.652;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2642,303,0 chrXIV 104301 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.05;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3252,354,0 chrXIV 104411 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.279;QD=25.27;ReadPosRankSum=1.126;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3614,393,0 chrXIV 104767 . T C 2935 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2968,339,0 chrXIV 104914 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2202,249,0 chrXIV 104993 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2175,240,0 chrXIV 105047 . A T 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.619;QD=21.82;ReadPosRankSum=1.694;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2040,228,0 chrXIV 105280 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5373;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3995,435,0 chrXIV 105316 . G C 4227.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.8584;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.13;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4227,495,0 chrXIV 105379 . T C 4856.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4856,575,0 chrXIV 105629 . T C 5642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=260;Dels=0.00;FS=5.886;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.833;QD=21.70;ReadPosRankSum=2.957;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:3,256:260:99:5642,660,0 chrXIV 105727 . G A 7385.01 filter AC=2;AF=1.00;AN=2;DP=396;Dels=0.00;FS=0.000;HaplotypeScore=3.1055;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.65;SB=-3.915e+03 GT:AD:DP:GQ:PL 1/1:0,396:396:99:7385,822,0 chrXIV 105728 . A G 7223.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=397;Dels=0.00;FS=4.274;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.251;QD=18.19;ReadPosRankSum=1.697;SB=-3.765e+03 GT:AD:DP:GQ:PL 1/1:1,395:397:99:7223,822,0 chrXIV 105771 . T C 7211.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=435;Dels=0.00;FS=0.000;HaplotypeScore=23.0799;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.770;QD=16.58;ReadPosRankSum=2.218;SB=-4.887e+03 GT:AD:DP:GQ:PL 1/1:4,429:435:99:7211,807,0 chrXIV 105838 . G C 7186.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.63;SB=-4.148e+03 GT:AD:DP:GQ:PL 1/1:0,360:366:99:7186,839,0 chrXIV 105839 . G A 7594.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.86;SB=-4.385e+03 GT:AD:DP:GQ:PL 1/1:0,363:364:99:7594,846,0 chrXIV 106004 . T G 6973.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=16.6558;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.33;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,340:343:99:6973,812,0 chrXIV 106090 . G A 5744.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=20.08;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:5744,642,0 chrXIV 106097 . G A 5586.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=20.46;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5586,615,0 chrXIV 106103 . G A 5285.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=19.94;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5285,594,0 chrXIV 106177 . A G 4586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=215;Dels=0.00;FS=2.920;HaplotypeScore=13.0082;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.836;QD=21.33;ReadPosRankSum=2.403;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:2,210:215:99:4586,542,0 chrXIV 106295 . G A 5893.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.84;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5893,654,0 chrXIV 106712 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.60;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2690,303,0 chrXIV 106737 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.13;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2300,252,0 chrXIV 106801 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2697,297,0 chrXIV 106872 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2725,300,0 chrXIV 107060 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.55;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3368,369,0 chrXIV 107345 . T C 2712 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.3485;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.16;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2745,321,0 chrXIV 107400 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=16.84;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2795,324,0 chrXIV 107424 . A G 2283 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=133.8189;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=14.09;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2316,264,0 chrXIV 107440 . A G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;MQRankSum=1.316;QD=15.87;ReadPosRankSum=1.710;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2556,297,0 chrXIV 107444 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=15.89;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2670,300,0 chrXIV 107540 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.601;QD=21.23;ReadPosRankSum=1.710;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3355,390,0 chrXIV 107561 . T G 3016 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=20.52;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3049,354,0 chrXIV 107564 . T C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-0.514;QD=19.96;ReadPosRankSum=1.613;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2927,330,0 chrXIV 107671 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=22.06;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3144,357,0 chrXIV 107683 . T A 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.416;QD=22.87;ReadPosRankSum=1.705;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2983,324,0 chrXIV 107731 . A G 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.606;QD=19.81;ReadPosRankSum=1.701;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2232,252,0 chrXIV 107852 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.40;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3406,387,0 chrXIV 108148 . A G 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.2892;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.499;QD=20.03;ReadPosRankSum=1.714;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3885,456,0 chrXIV 108312 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.56;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3492,408,0 chrXIV 108405 . A T 3156 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.55;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3189,357,0 chrXIV 108436 . T A 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.525;QD=22.18;ReadPosRankSum=1.687;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3438,375,0 chrXIV 108442 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.20;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3245,369,0 chrXIV 108588 . A G 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=210;Dels=0.00;FS=4.568;HaplotypeScore=12.6239;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.804;QD=24.25;ReadPosRankSum=1.715;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5093,576,0 chrXIV 108679 . G A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=18.63;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4377,501,0 chrXIV 108948 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3001,330,0 chrXIV 109033 . C T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4013,456,0 chrXIV 109383 . T C 4185.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.26;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4185,486,0 chrXIV 109413 . C T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.7161;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.31;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4289,471,0 chrXIV 109509 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.66;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3660,402,0 chrXIV 109533 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.13;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3624,420,0 chrXIV 109626 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.47;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4144,480,0 chrXIV 109806 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=177;Dels=0.00;FS=3.021;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.445;QD=21.99;ReadPosRankSum=2.352;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3892,438,0 chrXIV 109878 . G A 4660.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.00;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4660,531,0 chrXIV 109881 . A G 4587.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.94;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4587,534,0 chrXIV 109914 . G A 5202.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.23;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5202,573,0 chrXIV 110232 . G A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3985,450,0 chrXIV 110465 . T A 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.493;QD=22.35;ReadPosRankSum=1.704;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2782,309,0 chrXIV 110556 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.46;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2872,312,0 chrXIV 110628 . A T 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=2.960;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=22.90;ReadPosRankSum=2.328;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2804,309,0 chrXIV 110765 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.32;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2805,303,0 chrXIV 110867 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2354,264,0 chrXIV 110961 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=157;Dels=0.00;FS=2.672;HaplotypeScore=12.9647;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.363;QD=21.66;ReadPosRankSum=2.402;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3401,390,0 chrXIV 111039 . A G 4735.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.2385;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.28;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4735,537,0 chrXIV 111216 . A G 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.258;QD=19.61;ReadPosRankSum=1.671;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4471,516,0 chrXIV 111222 . G C 4598.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.99;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4598,537,0 chrXIV 111267 . T A 5772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=271;Dels=0.00;FS=3.723;HaplotypeScore=16.1278;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.297;QD=21.30;ReadPosRankSum=1.719;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:5772,636,0 chrXIV 111323 . T C 5764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=267;Dels=0.00;FS=11.221;HaplotypeScore=15.3907;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.291;QD=21.59;ReadPosRankSum=2.936;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:3,263:267:99:5764,657,0 chrXIV 111448 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.7809;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.140;QD=22.75;ReadPosRankSum=1.697;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4528,516,0 chrXIV 111795 . T A 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=180;Dels=0.00;FS=2.991;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.235;QD=22.42;ReadPosRankSum=2.422;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4036,444,0 chrXIV 112128 . A T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3755,429,0 chrXIV 112194 . T C 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=174;Dels=0.00;FS=9.593;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.120;QD=21.07;ReadPosRankSum=2.421;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3666,429,0 chrXIV 112491 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.42;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3298,378,0 chrXIV 112669 . A G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.633;QD=16.99;ReadPosRankSum=1.708;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2514,288,0 chrXIV 112908 . T A 1965 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1998,231,0 chrXIV 112944 . T C 2214 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2247,261,0 chrXIV 113198 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=150;Dels=0.00;FS=5.877;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.738;QD=22.76;ReadPosRankSum=2.859;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3414,396,0 chrXIV 113233 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.43;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3410,375,0 chrXIV 113311 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.01;FS=2.938;HaplotypeScore=8.2130;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.020;QD=17.16;ReadPosRankSum=2.219;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3156,363,0 chrXIV 113312 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.01;FS=3.601;HaplotypeScore=8.2130;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.833;QD=17.69;ReadPosRankSum=1.636;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3252,363,0 chrXIV 113360 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.92;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3120,351,0 chrXIV 113719 . C G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.15;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3305,375,0 chrXIV 113721 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.59;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3356,372,0 chrXIV 113969 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.42;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2835,315,0 chrXIV 114050 . C A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5619;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.02;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3568,408,0 chrXIV 114209 . A G 2521 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.92;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2554,297,0 chrXIV 114221 . C T 2635 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.60;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2668,300,0 chrXIV 114314 . C T 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.153;QD=22.12;ReadPosRankSum=-0.815;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3042,328,0 chrXIV 114676 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.39;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3582,390,0 chrXIV 114732 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.4799;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.28;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3543,408,0 chrXIV 114795 . A G 5016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=213;Dels=0.00;FS=7.766;HaplotypeScore=8.6168;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.527;QD=23.55;ReadPosRankSum=2.415;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:5016,579,0 chrXIV 114824 . T C 4763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=205;Dels=0.00;FS=2.832;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.210;QD=23.23;ReadPosRankSum=2.413;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4763,537,0 chrXIV 114893 . G C 2779 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.88;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2812,327,0 chrXIV 114912 . C G 2963 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.79;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2996,336,0 chrXIV 115011 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.99;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3652,408,0 chrXIV 115059 . G A 2375 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=19.15;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2408,264,0 chrXIV 115064 . G A 2326 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=19.38;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2359,261,0 chrXIV 115067 . C T 2206 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=18.54;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2239,246,0 chrXIV 115150 . G C 2687 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.51;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2720,306,0 chrXIV 115292 . T C 2734 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.17;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2767,315,0 chrXIV 115349 . C T 3181 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.09;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3214,369,0 chrXIV 115483 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.21;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4599,495,0 chrXIV 115637 . C T 5227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=237;Dels=0.00;FS=3.454;HaplotypeScore=6.9281;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.717;QD=22.05;ReadPosRankSum=1.717;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5227,576,0 chrXIV 115655 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.74;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5369,588,0 chrXIV 115691 . A G 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.6141;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.336;QD=19.94;ReadPosRankSum=1.716;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4187,480,0 chrXIV 115811 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.4822;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.699;QD=17.62;ReadPosRankSum=0.783;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3683,414,0 chrXIV 115895 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.9023;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.58;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4014,459,0 chrXIV 116051 . C T 5702.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.72;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:5702,636,0 chrXIV 116117 . G A 5720.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=6.9923;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.33;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:5720,666,0 chrXIV 116131 . T C 5900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=11.9409;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.165;QD=18.21;ReadPosRankSum=1.711;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:1,323:324:99:5900,684,0 chrXIV 116459 . C A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=22.4462;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.67;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3576,396,0 chrXIV 116676 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.15;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1648,189,0 chrXIV 116678 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=18.59;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1650,189,0 chrXIV 116758 . G A 681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2695;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.931;QD=10.01;ReadPosRankSum=-0.893;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:3,64:68:78:714,78,0 chrXIV 116796 . A C 941 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=15.68;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:974,114,0 chrXIV 116881 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-1.059;QD=23.09;ReadPosRankSum=1.632;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3243,375,0 chrXIV 116892 . A G 2776 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.75;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2809,327,0 chrXIV 116973 . G T 1395 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.51;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1428,159,0 chrXIV 117055 . A G 2252 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.45;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2285,255,0 chrXIV 117101 . A C 1373 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.49;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1406,159,0 chrXIV 117253 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.22;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1635,183,0 chrXIV 117410 . C G 2840 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.5507;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.47;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2873,327,0 chrXIV 117759 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.8066;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.21;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4038,450,0 chrXIV 117786 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.737;QD=21.66;ReadPosRankSum=1.694;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3920,441,0 chrXIV 117840 . G A 4994.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.3300;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.34;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4994,552,0 chrXIV 117867 . C A 4917.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.56;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4917,546,0 chrXIV 117901 . G T 4514.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.6509;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.19;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4514,498,0 chrXIV 117954 . T C 5113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=237;Dels=0.00;FS=5.778;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.583;QD=21.57;ReadPosRankSum=2.936;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:3,233:237:99:5113,582,0 chrXIV 118227 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.5700;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.74;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4688,519,0 chrXIV 118249 . G C 4720.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.17;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:4720,546,0 chrXIV 118803 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.57;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2440,270,0 chrXIV 118875 . A T 851 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:96:884,96,0 chrXIV 118970 . A T 525 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=15.44;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:66:558,66,0 chrXIV 119074 . G A 172.03 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=0;QD=3.19;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,53:54:24:205,24,0 chrXIV 119128 . C T 1859 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=18.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1892,216,0 chrXIV 119174 . T C 2415 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.304;QD=24.90;ReadPosRankSum=1.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2448,282,0 chrXIV 119209 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.98;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2029,222,0 chrXIV 119218 . C T 1834 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.14;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1867,207,0 chrXIV 119261 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.94;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3826,417,0 chrXIV 119276 . T A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=17.11;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:3748,411,0 chrXIV 119295 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.08;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:4578,498,0 chrXIV 119414 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.20;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3901,426,0 chrXIV 119721 . A C 2976 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.0738;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.67;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3009,348,0 chrXIV 119890 . T A 2922 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.9125;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.83;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2955,327,0 chrXIV 120530 . T C 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=225;Dels=0.00;FS=8.385;HaplotypeScore=13.2205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.133;QD=22.28;ReadPosRankSum=2.384;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5013,579,0 chrXIV 121108 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.99;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1982,219,0 chrXIV 121220 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.20;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2469,276,0 chrXIV 121385 . G T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.80;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3390,378,0 chrXIV 121394 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.69;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3137,348,0 chrXIV 121510 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=18.3610;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.38;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3400,375,0 chrXIV 121703 . G T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.29;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3656,408,0 chrXIV 121736 . G C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.54;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3856,444,0 chrXIV 121807 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=209;Dels=0.00;FS=6.047;HaplotypeScore=18.2857;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.005;QD=21.07;ReadPosRankSum=2.956;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:3,204:209:99:4403,501,0 chrXIV 121847 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=186;Dels=0.00;FS=9.043;HaplotypeScore=3.0489;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.505;QD=18.88;ReadPosRankSum=3.375;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:4,181:186:99:3512,405,0 chrXIV 121853 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.2224;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.68;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3896,423,0 chrXIV 121889 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.07;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4215,459,0 chrXIV 121988 . T G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.38;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3709,435,0 chrXIV 122135 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.9805;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.97;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2713,297,0 chrXIV 122172 . T C 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=126;Dels=0.00;FS=3.038;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.207;QD=20.88;ReadPosRankSum=2.391;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2664,306,0 chrXIV 122216 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.42;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3298,369,0 chrXIV 122217 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.43;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3279,366,0 chrXIV 122278 . T A 3098 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.61;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3131,345,0 chrXIV 122496 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.1676;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.54;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:3967,456,0 chrXIV 122520 . C T 4938.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.3707;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.99;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:4938,555,0 chrXIV 122564 . C T 6183.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.47;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6183,678,0 chrXIV 122677 . C T 5087.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.88;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5087,552,0 chrXIV 122717 . A G 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=241;Dels=0.00;FS=2.703;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.046;QD=20.86;ReadPosRankSum=2.399;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5028,582,0 chrXIV 123158 . G C 4946.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.5688;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.28;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,217:222:99:4946,564,0 chrXIV 123338 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.6780;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.55;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3496,390,0 chrXIV 123423 . A C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.269;QD=18.72;ReadPosRankSum=1.711;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3084,357,0 chrXIV 123426 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.52;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3136,351,0 chrXIV 123613 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.64;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3499,393,0 chrXIV 123896 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3648,423,0 chrXIV 124154 . T C 2062 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.17;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2095,237,0 chrXIV 124235 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2942,324,0 chrXIV 124329 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.66;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2865,330,0 chrXIV 124634 . C G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.6425;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.94;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,155:161:99:3371,387,0 chrXIV 124691 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.28;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3115,342,0 chrXIV 124765 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.09;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3173,348,0 chrXIV 124790 . A G 2733 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.35;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2766,318,0 chrXIV 124873 . C G 2089 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.47;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2122,240,0 chrXIV 124892 . G C 2079 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.43;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2112,249,0 chrXIV 124988 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.47;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3263,366,0 chrXIV 125180 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.33;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2782,309,0 chrXIV 125337 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3106,360,0 chrXIV 125603 . A G 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=186;Dels=0.00;FS=8.041;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.165;QD=22.59;ReadPosRankSum=2.423;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4201,486,0 chrXIV 125872 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.0129;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.64;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4189,480,0 chrXIV 125950 . G A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.03;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3745,408,0 chrXIV 126009 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7880;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.84;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3385,375,0 chrXIV 126226 . G A 2750 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.71;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2783,306,0 chrXIV 126359 . T C 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.722;DP=209;Dels=0.00;FS=5.737;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.307;QD=20.74;ReadPosRankSum=2.966;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:3,203:209:99:4335,504,0 chrXIV 126393 . A G 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=4.224;HaplotypeScore=6.1977;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.525;QD=22.28;ReadPosRankSum=1.611;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4478,530,0 chrXIV 126744 . G A 812 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:845,96,0 chrXIV 126981 . T C 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.022;QD=22.43;ReadPosRankSum=2.274;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1289,147,0 chrXIV 127143 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.2085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2642,297,0 chrXIV 127822 . C G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3649,408,0 chrXIV 128581 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.5953;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.49;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3509,399,0 chrXIV 128889 . A G 3207 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0631;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.24;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3240,369,0 chrXIV 128908 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.81;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:2988,342,0 chrXIV 129103 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.92;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3896,447,0 chrXIV 129503 . A G 1414 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.735;QD=21.42;ReadPosRankSum=-0.105;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1447,168,0 chrXIV 129564 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.95;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1829,216,0 chrXIV 129594 . T C 2024 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=24.99;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2057,237,0 chrXIV 129800 . T C 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=3.842;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.033;QD=21.14;ReadPosRankSum=1.700;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2358,273,0 chrXIV 129834 . C G 2386 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.30;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2419,276,0 chrXIV 129846 . A G 2490 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.47;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2523,288,0 chrXIV 130095 . T C 2937 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.44;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2970,345,0 chrXIV 130662 . T A 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.078;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.480;QD=24.23;ReadPosRankSum=1.705;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3183,351,0 chrXIV 130860 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.53;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2669,294,0 chrXIV 130982 . A G 2456 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.54;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2489,285,0 chrXIV 131042 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=6.277;HaplotypeScore=10.7805;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.762;QD=23.38;ReadPosRankSum=2.348;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2862,324,0 chrXIV 131438 . T C 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=131;Dels=0.00;FS=10.439;HaplotypeScore=9.7346;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.433;QD=19.25;ReadPosRankSum=2.945;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:3,125:131:99:2555,294,0 chrXIV 131472 . T C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=95;Dels=0.00;FS=12.150;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=0.479;QD=14.15;ReadPosRankSum=2.905;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1377,165,0 chrXIV 131487 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=9.7663;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=16.60;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1942,216,0 chrXIV 131668 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5877;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.59;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2208,252,0 chrXIV 131762 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.86;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2570,288,0 chrXIV 131782 . C G 2227 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.62;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2260,261,0 chrXIV 131794 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.25;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2285,249,0 chrXIV 131946 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.75;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3056,339,0 chrXIV 132054 . A G 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=4.512;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=1.519;QD=21.05;ReadPosRankSum=1.652;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2770,321,0 chrXIV 132063 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.44;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2799,309,0 chrXIV 132161 . T G 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=146;Dels=0.00;FS=6.234;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.093;QD=21.23;ReadPosRankSum=2.382;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3132,366,0 chrXIV 132228 . A T 2945 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.4934;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.77;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2978,342,0 chrXIV 132251 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.03;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:2828,312,0 chrXIV 132297 . G C 2719 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.29;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2752,312,0 chrXIV 132374 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1032;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.74;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2958,321,0 chrXIV 132585 . T C 2581 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.16;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2614,300,0 chrXIV 132587 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.67;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2637,288,0 chrXIV 132696 . A C 2365 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.3387;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.77;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2398,273,0 chrXIV 132708 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.981;QD=18.62;ReadPosRankSum=1.659;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2696,312,0 chrXIV 132925 . G C 2474 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.63;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2507,285,0 chrXIV 132929 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.50;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2636,291,0 chrXIV 133032 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=9.4925;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.61;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3505,393,0 chrXIV 133191 . C T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.90;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3591,411,0 chrXIV 133521 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.75;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2444,270,0 chrXIV 133722 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.69;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1904,216,0 chrXIV 133815 . T A 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.410;DP=86;Dels=0.00;FS=3.904;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=0.443;QD=19.28;ReadPosRankSum=1.692;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1691,192,0 chrXIV 134006 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=19.32;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1656,183,0 chrXIV 134481 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.523;QD=21.15;ReadPosRankSum=1.639;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3205,372,0 chrXIV 134547 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3296,375,0 chrXIV 134681 . T C 1932 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.76;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1965,228,0 chrXIV 134870 . A G 3103 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.69;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3136,366,0 chrXIV 134901 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.09;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3266,366,0 chrXIV 135060 . A C 3569.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.51;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3569,408,0 chrXIV 135072 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.6362;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.38;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3730,432,0 chrXIV 135270 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.73;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3275,375,0 chrXIV 135401 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=19.98;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2790,309,0 chrXIV 135414 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=19.78;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2664,297,0 chrXIV 135439 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.265;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.732;QD=18.89;ReadPosRankSum=1.704;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2357,270,0 chrXIV 135441 . C A 2319 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.55;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2352,267,0 chrXIV 135582 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=21.80;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2475,273,0 chrXIV 135598 . T C 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=120;Dels=0.00;FS=12.565;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.519;QD=18.44;ReadPosRankSum=3.282;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2246,255,0 chrXIV 135599 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.71;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2334,255,0 chrXIV 135687 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.906;HaplotypeScore=10.3964;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;MQRankSum=0.881;QD=22.78;ReadPosRankSum=1.703;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2721,306,0 chrXIV 135752 . A G 2236 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=16.09;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2269,261,0 chrXIV 135755 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=17.20;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2389,267,0 chrXIV 135855 . A C 2211 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=18.12;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2244,264,0 chrXIV 135877 . T C 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.129;DP=128;Dels=0.00;FS=8.156;HaplotypeScore=321.3025;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;MQRankSum=4.625;QD=8.45;ReadPosRankSum=-3.258;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:72,55:128:93:1115,93,0 chrXIV 135908 . G A 371.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.939;DP=127;Dels=0.00;FS=4.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.86;MQ0=0;MQRankSum=-1.133;QD=2.92;ReadPosRankSum=5.659;SB=-1.317e+03 GT:AD:DP:GQ:PL 0/1:13,114:127:36:401,0,36 chrXIV 135913 . T C 491.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;DP=131;Dels=0.00;FS=5.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.54;MQ0=0;MQRankSum=-0.441;QD=3.75;ReadPosRankSum=4.991;SB=-1.330e+03 GT:AD:DP:GQ:PL 0/1:9,122:131:21:521,0,21 chrXIV 135928 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=12.52;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:1899,222,0 chrXIV 136113 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=0.297;QD=24.01;ReadPosRankSum=1.671;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4106,462,0 chrXIV 136144 . C A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=24.56;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4175,459,0 chrXIV 136249 . T A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.02;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3914,426,0 chrXIV 136345 . A G 2820 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.72;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2853,336,0 chrXIV 136375 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.67;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3381,384,0 chrXIV 136579 . A G 2030 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.45;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2063,237,0 chrXIV 136765 . A C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3471;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.67;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3332,381,0 chrXIV 136798 . T G 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=1.462;QD=16.21;ReadPosRankSum=1.658;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2335,273,0 chrXIV 136846 . A G 290 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=3.58;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:36:323,36,0 chrXIV 136852 . A G 92.26 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=0;QD=1.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:15:125,15,0 chrXIV 136873 . C T 158.06 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.72;MQ0=0;QD=2.47;SB=-1.641e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:21:191,21,0 chrXIV 136877 . T C 198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=0;MQRankSum=-1.579;QD=2.91;ReadPosRankSum=1.681;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:27:231,27,0 chrXIV 136894 . A G 919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=3.697;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;MQRankSum=1.648;QD=11.07;ReadPosRankSum=1.690;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:952,111,0 chrXIV 136900 . A T 1176 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=13.67;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1209,135,0 chrXIV 136945 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=172;Dels=0.00;FS=6.094;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=1.488;QD=19.53;ReadPosRankSum=2.935;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3360,375,0 chrXIV 137056 . T A 3199 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=18.39;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3232,375,0 chrXIV 137110 . C A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=22.69;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3744,417,0 chrXIV 137123 . G T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=22.19;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3905,426,0 chrXIV 137209 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.94;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3476,381,0 chrXIV 137224 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.20;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3239,360,0 chrXIV 137266 . T C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.3451;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.693;QD=15.05;ReadPosRankSum=-1.055;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:2742,324,0 chrXIV 137285 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=163;Dels=0.00;FS=5.488;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.596;QD=16.34;ReadPosRankSum=2.919;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:2696,306,0 chrXIV 137398 . G T 2906 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.94;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2939,339,0 chrXIV 137407 . C G 2556 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=17.04;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2589,300,0 chrXIV 137422 . G T 2368 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7660;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=16.00;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2401,276,0 chrXIV 137496 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=153;Dels=0.00;FS=3.034;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.361;QD=20.40;ReadPosRankSum=2.401;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3154,357,0 chrXIV 137643 . T G 3015 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.79;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3048,348,0 chrXIV 137715 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=90.8710;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.38;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2642,294,0 chrXIV 137801 . G C 3062 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=7.2766;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.55;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3095,351,0 chrXIV 137823 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=22.25;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3337,366,0 chrXIV 137862 . G C 2452 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.7176;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.72;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,126:131:99:2485,291,0 chrXIV 138022 . T C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=3.680;HaplotypeScore=4.3769;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-0.585;QD=17.16;ReadPosRankSum=1.642;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2676,312,0 chrXIV 138025 . T C 2427 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.3700;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=15.66;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:2460,288,0 chrXIV 138071 . A C 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.939;DP=148;Dels=0.00;FS=24.453;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;MQRankSum=-2.418;QD=10.61;ReadPosRankSum=4.424;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:7,139:148:99:1604,183,0 chrXIV 138082 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=12.10;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:1679,192,0 chrXIV 138172 . G T 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.367;DP=142;Dels=0.00;FS=3.106;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.682;QD=21.95;ReadPosRankSum=-0.089;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,136:142:99:3150,360,0 chrXIV 138230 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.85;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2615,294,0 chrXIV 138404 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.93;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2968,339,0 chrXIV 138470 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.17;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2870,321,0 chrXIV 138537 . T C 221.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.777;DP=122;Dels=0.00;FS=24.292;HaplotypeScore=98.6065;MLEAC=1;MLEAF=0.500;MQ=56.51;MQ0=0;MQRankSum=0.514;QD=1.81;ReadPosRankSum=-5.284;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:103,18:122:13:251,0,13 chrXIV 138539 . T C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;DP=121;Dels=0.00;FS=21.445;HaplotypeScore=99.5771;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=0;MQRankSum=-0.131;QD=0.30;ReadPosRankSum=5.516;SB=-9.140e+02 GT:AD:DP:GQ:PL 0/1:17,104:121:66:66,0,125 chrXIV 138698 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7688;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.42;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3448,378,0 chrXIV 138712 . C A 3115 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.59;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3148,351,0 chrXIV 138817 . A C 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=219;Dels=0.00;FS=6.713;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.290;QD=20.06;ReadPosRankSum=2.370;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:2,214:219:99:4394,501,0 chrXIV 138826 . A G 4536.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.89;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4536,522,0 chrXIV 138891 . C T 4845.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.07;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4845,555,0 chrXIV 138984 . G A 4281.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.09;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4281,495,0 chrXIV 139602 . A G 2746 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2779,324,0 chrXIV 139774 . G A 4511.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.78;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4511,525,0 chrXIV 140010 . A G 6190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=291;Dels=0.00;FS=8.967;HaplotypeScore=25.1831;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.506;QD=21.27;ReadPosRankSum=3.412;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:4,281:291:99:6190,717,0 chrXIV 140115 . C T 5030.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.1190;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.86;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5030,552,0 chrXIV 140190 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.15;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3950,429,0 chrXIV 140230 . G A 3604.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6061;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.87;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3604,411,0 chrXIV 140238 . T C 3150 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.80;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3183,375,0 chrXIV 140328 . T C 2754 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=20.55;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2787,324,0 chrXIV 140385 . G A 1923 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=20.24;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1956,228,0 chrXIV 140391 . G A 1604 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=18.44;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1637,192,0 chrXIV 140393 . A G 1589 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;MQRankSum=-2.189;QD=18.69;ReadPosRankSum=2.392;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1622,189,0 chrXIV 140410 . A C 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=0;MQRankSum=-0.854;QD=17.68;ReadPosRankSum=1.683;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1341,159,0 chrXIV 140432 . T G 1005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=3.921;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;MQRankSum=-0.890;QD=13.58;ReadPosRankSum=1.685;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1038,120,0 chrXIV 140444 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=12.75;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1002,117,0 chrXIV 140470 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=17.98;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1867,216,0 chrXIV 140504 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=17.41;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1983,231,0 chrXIV 140527 . T A 2096 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=19.41;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2129,240,0 chrXIV 140549 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=14.82;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1545,186,0 chrXIV 140559 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=12.74;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1078,126,0 chrXIV 140575 . A G 696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.710;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;MQRankSum=-1.732;QD=9.80;ReadPosRankSum=1.683;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:90:729,90,0 chrXIV 140577 . A T 709 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;QD=10.13;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:90:742,90,0 chrXIV 140587 . A T 558 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;QD=8.45;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:72:591,72,0 chrXIV 140590 . T G 596 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;MQRankSum=1.253;QD=9.03;ReadPosRankSum=2.263;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:78:629,78,0 chrXIV 140596 . T C 695 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=2.649;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=1.233;QD=9.52;ReadPosRankSum=2.382;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:90:728,90,0 chrXIV 140603 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=10.27;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:90:793,90,0 chrXIV 140614 . T G 776 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=11.09;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:96:809,96,0 chrXIV 140615 . G A 859 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=12.10;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:892,102,0 chrXIV 140765 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=22.72;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2010,222,0 chrXIV 140787 . G T 2057 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=22.86;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2090,240,0 chrXIV 140864 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.618;DP=118;Dels=0.00;FS=8.058;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.654;QD=20.08;ReadPosRankSum=3.740;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:5,112:118:99:2402,270,0 chrXIV 140943 . A G 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=5.607;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.068;QD=22.94;ReadPosRankSum=1.674;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2809,321,0 chrXIV 140970 . A T 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=139;Dels=0.00;FS=10.262;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.876;QD=21.94;ReadPosRankSum=2.326;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3083,336,0 chrXIV 141075 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.310;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.690;QD=23.30;ReadPosRankSum=1.648;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3844,441,0 chrXIV 141396 . C G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.190;QD=23.59;ReadPosRankSum=0.024;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3444,393,0 chrXIV 141564 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3470,399,0 chrXIV 141630 . C A 2584 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.28;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2617,291,0 chrXIV 141675 . T C 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=125;Dels=0.00;FS=3.305;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.477;QD=21.42;ReadPosRankSum=1.533;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2711,315,0 chrXIV 141714 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.90;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2989,333,0 chrXIV 141816 . T C 3164 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.93;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3197,366,0 chrXIV 141865 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.5472;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.65;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3466,381,0 chrXIV 141890 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.22;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3553,402,0 chrXIV 142022 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.77;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2609,285,0 chrXIV 142083 . G A 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=145;Dels=0.00;FS=4.986;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.753;QD=21.79;ReadPosRankSum=0.968;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3193,333,0 chrXIV 142341 . T C 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=87;Dels=0.00;FS=3.713;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.100;QD=19.26;ReadPosRankSum=1.692;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1709,195,0 chrXIV 142446 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.40;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2490,276,0 chrXIV 142612 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.979;QD=22.86;ReadPosRankSum=1.682;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3188,366,0 chrXIV 142663 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.38;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2998,330,0 chrXIV 142664 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=19.97;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3069,333,0 chrXIV 142756 . G A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3248;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.72;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4245,468,0 chrXIV 142839 . T G 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=187;Dels=0.00;FS=3.991;HaplotypeScore=8.9675;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-0.577;QD=20.85;ReadPosRankSum=1.675;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,182:187:99:3899,459,0 chrXIV 142854 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=19.43;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3181,372,0 chrXIV 142864 . G C 2872 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=19.94;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2905,342,0 chrXIV 142899 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=18.66;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2869,336,0 chrXIV 143172 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=2.880;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.725;QD=21.04;ReadPosRankSum=2.395;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2852,330,0 chrXIV 143193 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.22;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2416,264,0 chrXIV 143202 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.25;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2402,264,0 chrXIV 143292 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.7402;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.49;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3137,351,0 chrXIV 143403 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.91;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2943,339,0 chrXIV 143460 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=140;Dels=0.00;FS=4.027;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.660;QD=19.29;ReadPosRankSum=1.657;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2734,306,0 chrXIV 143466 . T C 2581 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=17.80;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2614,303,0 chrXIV 143709 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.118;QD=21.47;ReadPosRankSum=1.710;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3414,399,0 chrXIV 143955 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.29;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2375,273,0 chrXIV 144084 . A G 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=3.4223;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;MQRankSum=-1.321;QD=0.22;ReadPosRankSum=1.674;SB=-3.418e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:6:44,6,0 chrXIV 144169 . A G 413 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=7.37;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:51:446,51,0 chrXIV 144192 . A G 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;MQRankSum=1.895;QD=13.45;ReadPosRankSum=2.388;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1109,129,0 chrXIV 144227 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.31;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1546,171,0 chrXIV 144250 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.41;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1602,177,0 chrXIV 144301 . A G 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=5.778;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.020;QD=20.40;ReadPosRankSum=1.692;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1828,219,0 chrXIV 144313 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=22.14;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2136,240,0 chrXIV 144391 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.30;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2386,270,0 chrXIV 144427 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.02;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2639,291,0 chrXIV 144436 . G T 2628 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.61;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2661,300,0 chrXIV 144490 . T A 3114 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.3824;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.34;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3147,351,0 chrXIV 144547 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.38;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3213,351,0 chrXIV 144587 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.69;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3341,375,0 chrXIV 144778 . G C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.65;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,172:178:99:3853,450,0 chrXIV 144936 . G A 4870.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.76;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4870,537,0 chrXIV 144963 . T C 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=216;Dels=0.00;FS=6.075;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-1.752;QD=20.51;ReadPosRankSum=2.846;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4431,507,0 chrXIV 144997 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=215;Dels=0.00;FS=7.212;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=-0.634;QD=18.27;ReadPosRankSum=2.392;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:3929,459,0 chrXIV 145006 . C A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=18.25;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3742,423,0 chrXIV 145069 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.18;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4087,444,0 chrXIV 145188 . A T 2203 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5848;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=20.59;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2236,258,0 chrXIV 145205 . T C 1647 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.05;FS=0.000;HaplotypeScore=5.6915;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=19.38;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1680,195,0 chrXIV 145206 . C T 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.056;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;MQRankSum=1.313;QD=20.08;ReadPosRankSum=3.140;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:4,80:84:99:1720,195,0 chrXIV 145227 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=18.79;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1367,162,0 chrXIV 145293 . G T 1428 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=21.64;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1461,159,0 chrXIV 145312 . C G 1430 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=19.59;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1463,171,0 chrXIV 145332 . T C 1375 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.58;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1408,165,0 chrXIV 145376 . G A 1261 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.01;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1294,144,0 chrXIV 145554 . T C 2052 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.00;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2085,246,0 chrXIV 145668 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=162;Dels=0.00;FS=5.899;HaplotypeScore=12.8857;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.805;QD=21.23;ReadPosRankSum=2.881;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,157:162:99:3440,390,0 chrXIV 145848 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.77;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3044,336,0 chrXIV 146037 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.2347;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.63;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4372,477,0 chrXIV 146289 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.88;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3758,429,0 chrXIV 146337 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.77;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3853,420,0 chrXIV 146493 . G C 2683 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.64;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2716,315,0 chrXIV 146563 . T C 2911 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2418;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.94;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2944,339,0 chrXIV 146788 . G C 1043 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.56;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1076,126,0 chrXIV 146794 . T G 1104 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2455;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=18.10;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1137,132,0 chrXIV 146829 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.04;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1422,162,0 chrXIV 147085 . T C 2773 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.69;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2806,318,0 chrXIV 147100 . C G 2696 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.68;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2729,309,0 chrXIV 147322 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=3.473;HaplotypeScore=12.6583;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.304;QD=22.97;ReadPosRankSum=1.713;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:4158,465,0 chrXIV 147466 . A C 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=159;Dels=0.00;FS=3.993;HaplotypeScore=5.7641;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.688;QD=21.75;ReadPosRankSum=1.710;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3458,405,0 chrXIV 147716 . C G 4084.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.0365;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.56;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4084,465,0 chrXIV 147866 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=182;Dels=0.00;FS=3.601;HaplotypeScore=12.9239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.182;QD=20.42;ReadPosRankSum=1.713;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3717,423,0 chrXIV 148161 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.0944;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.06;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4312,489,0 chrXIV 148327 . A C 5296.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.93;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5296,600,0 chrXIV 148331 . T C 5132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.842;QD=19.97;ReadPosRankSum=1.719;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5132,594,0 chrXIV 148607 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.5224;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.485;QD=20.35;ReadPosRankSum=1.699;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4273,492,0 chrXIV 148787 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.94;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3686,432,0 chrXIV 148823 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=162;Dels=0.00;FS=10.047;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.381;QD=23.04;ReadPosRankSum=2.956;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3733,417,0 chrXIV 148865 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.33;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2879,330,0 chrXIV 148874 . T C 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.003;QD=20.40;ReadPosRankSum=1.706;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2746,318,0 chrXIV 149054 . T C 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=111;Dels=0.00;FS=4.393;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.567;QD=19.28;ReadPosRankSum=1.669;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2173,255,0 chrXIV 149537 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=142;Dels=0.00;FS=3.529;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.561;QD=22.18;ReadPosRankSum=1.708;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3183,366,0 chrXIV 150779 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.54;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3358,378,0 chrXIV 151307 . A G 2365 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.70;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2398,279,0 chrXIV 151701 . T C 2596 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.97;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2629,300,0 chrXIV 152355 . T G 2769 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.67;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2802,315,0 chrXIV 152936 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.63;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2324,258,0 chrXIV 153086 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.55;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2684,309,0 chrXIV 153164 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2821,312,0 chrXIV 153222 . A G 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.126;DP=152;Dels=0.00;FS=3.012;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.590;QD=20.20;ReadPosRankSum=2.401;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3103,360,0 chrXIV 153782 . T C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.211;QD=21.21;ReadPosRankSum=1.704;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2642,306,0 chrXIV 153810 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.42;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2409,264,0 chrXIV 154017 . G T 2910 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.91;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2943,324,0 chrXIV 154539 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=122;Dels=0.00;FS=6.204;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.527;QD=19.05;ReadPosRankSum=2.409;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2357,276,0 chrXIV 154853 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2008,228,0 chrXIV 154945 . A C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=63;Dels=0.00;FS=21.214;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.951;QD=0.52;ReadPosRankSum=0.426;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:3,60:63:9:65,9,0 chrXIV 154947 . A C 41.97 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=0.65;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:9:74,9,0 chrXIV 155065 . T G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.605;QD=19.66;ReadPosRankSum=3.045;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:4,82:88:99:1763,186,0 chrXIV 155117 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.18;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2467,279,0 chrXIV 155435 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0880;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1923,219,0 chrXIV 155903 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.74;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3730,405,0 chrXIV 156212 . T C 3195 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.4680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3228,378,0 chrXIV 156560 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.84;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2682,303,0 chrXIV 156755 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.90;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3077,339,0 chrXIV 156760 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=144;Dels=0.00;FS=5.525;HaplotypeScore=3.3052;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.275;QD=18.99;ReadPosRankSum=1.613;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2767,327,0 chrXIV 156907 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.477;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.295;QD=20.95;ReadPosRankSum=-1.592;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2756,288,0 chrXIV 157126 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.3647;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.75;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2604,303,0 chrXIV 157216 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.22;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1837,207,0 chrXIV 157421 . T A 65.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.171;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.218;QD=1.15;ReadPosRankSum=-4.170;SB=-4.512e+00 GT:AD:DP:GQ:PL 1/1:49,8:57:12:98,12,0 chrXIV 157516 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.47;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1696,192,0 chrXIV 157526 . C G 1475 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.21;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1508,174,0 chrXIV 157659 . A G 1632 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=19.90;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1665,198,0 chrXIV 157663 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.86;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1741,195,0 chrXIV 157851 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.948;QD=22.06;ReadPosRankSum=2.389;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3618,411,0 chrXIV 157910 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.4693;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.31;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3367,375,0 chrXIV 157917 . T G 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=168;Dels=0.00;FS=2.973;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.377;QD=19.73;ReadPosRankSum=2.420;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3315,387,0 chrXIV 158478 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.52;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3044,330,0 chrXIV 158538 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3505;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.45;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3634,423,0 chrXIV 159120 . C G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.10;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3317,387,0 chrXIV 159157 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2583;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.22;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2628,288,0 chrXIV 159166 . A T 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.373;QD=18.41;ReadPosRankSum=1.652;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2426,270,0 chrXIV 159407 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.14;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2925,327,0 chrXIV 159540 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.32;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2248,249,0 chrXIV 159577 . A G 2573 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.57;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2606,294,0 chrXIV 159674 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8425;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.07;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2542,291,0 chrXIV 159685 . T G 2346 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.76;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2379,273,0 chrXIV 159750 . C G 2588 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.54;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2621,303,0 chrXIV 159822 . G C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.91;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,134:141:99:3263,372,0 chrXIV 160012 . C G 3606.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.4273;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.97;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3606,411,0 chrXIV 160055 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.208;DP=162;Dels=0.00;FS=8.113;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.240;QD=21.68;ReadPosRankSum=3.404;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:4,156:162:99:3512,393,0 chrXIV 160170 . A G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.000;DP=136;Dels=0.00;FS=10.704;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.885;QD=21.07;ReadPosRankSum=4.128;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:6,130:136:99:2899,339,0 chrXIV 160630 . C G 2173 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2206,249,0 chrXIV 161277 . A G 2998 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3031,357,0 chrXIV 161474 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2780,303,0 chrXIV 161874 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.44;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3035,339,0 chrXIV 162100 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2744;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.03;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2474,276,0 chrXIV 162171 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=11.2390;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.00;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1850,201,0 chrXIV 162419 . A G 3066 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.58;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3099,354,0 chrXIV 162494 . C A 2858 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=17.4921;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.56;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2891,318,0 chrXIV 162611 . T A 2313 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.03;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2346,258,0 chrXIV 162623 . A G 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.213;DP=102;Dels=0.00;FS=9.274;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.862;QD=19.27;ReadPosRankSum=3.352;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:4,97:102:99:1999,234,0 chrXIV 163370 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4057,468,0 chrXIV 163469 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2826,318,0 chrXIV 163952 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2998,327,0 chrXIV 165064 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4109,465,0 chrXIV 165144 . T G 3416.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3416,402,0 chrXIV 165505 . A G 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=178;Dels=0.00;FS=6.144;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.104;QD=24.01;ReadPosRankSum=2.422;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4274,486,0 chrXIV 165693 . G C 2584 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.19;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2617,312,0 chrXIV 165717 . A T 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.758;QD=19.95;ReadPosRankSum=1.543;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2587,285,0 chrXIV 165732 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=122;Dels=0.00;FS=6.892;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.173;QD=18.77;ReadPosRankSum=2.409;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2323,267,0 chrXIV 165982 . T A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.93;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4213,456,0 chrXIV 166576 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.278;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.400;QD=19.91;ReadPosRankSum=1.643;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2363,273,0 chrXIV 166583 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.62;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2301,255,0 chrXIV 166590 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.04;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2410,264,0 chrXIV 166603 . T C 2332 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.60;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2365,267,0 chrXIV 166733 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.484;QD=20.46;ReadPosRankSum=1.576;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2324,264,0 chrXIV 167208 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1724,192,0 chrXIV 167939 . G A 222 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.03;FS=0.000;HaplotypeScore=106.1117;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=1.80;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:30:255,30,0 chrXIV 167984 . T G 2869 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.27;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2902,345,0 chrXIV 168178 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3039;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.41;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3340,378,0 chrXIV 168436 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.59;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2958,330,0 chrXIV 168578 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=165;Dels=0.00;FS=10.289;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.331;QD=21.86;ReadPosRankSum=2.884;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3607,414,0 chrXIV 168712 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3559,399,0 chrXIV 169090 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2027;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.44;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4277,468,0 chrXIV 169220 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3300,363,0 chrXIV 169290 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.45;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3749,423,0 chrXIV 169455 . A C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=150;Dels=0.00;FS=6.109;HaplotypeScore=10.5875;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.190;QD=19.76;ReadPosRankSum=2.417;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2997,354,0 chrXIV 169528 . T G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.543;QD=19.96;ReadPosRankSum=1.701;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2289,267,0 chrXIV 169784 . A C 2993 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3026,339,0 chrXIV 169998 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3355,363,0 chrXIV 170087 . A G 2859 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2892,327,0 chrXIV 170305 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.529;QD=23.55;ReadPosRankSum=1.636;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3391,381,0 chrXIV 170509 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.24;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4300,486,0 chrXIV 170790 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5223;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.52;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3692,420,0 chrXIV 170870 . C G 3290.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.5516;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.23;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3290,381,0 chrXIV 171097 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.93;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2899,336,0 chrXIV 171365 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.02;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1988,228,0 chrXIV 171927 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.373;QD=20.95;ReadPosRankSum=1.666;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3331,381,0 chrXIV 173272 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;DP=191;Dels=0.00;FS=8.257;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.736;QD=22.95;ReadPosRankSum=3.378;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4384,504,0 chrXIV 173485 . C T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.3788;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.64;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4567,498,0 chrXIV 173725 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.16;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3845,444,0 chrXIV 173830 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=9.8882;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.57;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3058,348,0 chrXIV 174382 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.516;QD=21.90;ReadPosRankSum=1.706;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2924,339,0 chrXIV 174664 . A G 3933.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.87;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3933,459,0 chrXIV 174821 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=146;Dels=0.00;FS=3.071;HaplotypeScore=9.9680;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.192;QD=20.66;ReadPosRankSum=1.708;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3050,342,0 chrXIV 174916 . A T 2684 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.55;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2717,291,0 chrXIV 174935 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.50;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2742,315,0 chrXIV 175088 . T A 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.5892;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.814;QD=19.32;ReadPosRankSum=2.071;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2796,324,0 chrXIV 175091 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.49;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2902,324,0 chrXIV 175243 . C G 3288.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.81;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3288,381,0 chrXIV 175274 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.34;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4033,447,0 chrXIV 176348 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.22;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2877,330,0 chrXIV 176366 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=19.54;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2417,267,0 chrXIV 176374 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.98;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2348,264,0 chrXIV 176494 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3624,399,0 chrXIV 176637 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.14;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3199,354,0 chrXIV 176801 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2242,258,0 chrXIV 177005 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2314,264,0 chrXIV 177137 . A G 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.711;QD=22.71;ReadPosRankSum=1.367;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2213,258,0 chrXIV 177269 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.31;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3121,345,0 chrXIV 177299 . A G 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=8.014;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.092;QD=22.91;ReadPosRankSum=2.388;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2805,324,0 chrXIV 177761 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2473,273,0 chrXIV 177831 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.75;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2604,282,0 chrXIV 177881 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.66;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2435,288,0 chrXIV 178001 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2546,282,0 chrXIV 178052 . A G 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.797;QD=22.83;ReadPosRankSum=1.663;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2339,276,0 chrXIV 178095 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2701,309,0 chrXIV 178272 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.692;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.400;QD=22.95;ReadPosRankSum=1.703;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2718,315,0 chrXIV 178431 . G C 3115 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.09;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3148,360,0 chrXIV 178487 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.10;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2565,282,0 chrXIV 178556 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.57;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3238,366,0 chrXIV 179559 . A T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.78;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3703,420,0 chrXIV 180002 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2540,285,0 chrXIV 180367 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=4.098;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.104;QD=22.38;ReadPosRankSum=1.709;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3357,381,0 chrXIV 180736 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.82;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3316,363,0 chrXIV 180742 . C A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.89;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3459,378,0 chrXIV 180909 . G T 2584 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.71;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2617,300,0 chrXIV 181057 . A T 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.490;QD=19.51;ReadPosRankSum=1.692;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1711,198,0 chrXIV 181319 . A C 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1457;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.102;QD=18.44;ReadPosRankSum=1.299;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1674,177,0 chrXIV 181532 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.223;QD=21.85;ReadPosRankSum=1.690;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3562,405,0 chrXIV 181922 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.4654;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.39;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2942,324,0 chrXIV 182084 . C A 3190 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.46;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3223,363,0 chrXIV 182303 . G T 2477 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.73;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2510,279,0 chrXIV 182327 . G C 2215 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.14;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2248,267,0 chrXIV 182372 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.56;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2356,258,0 chrXIV 182393 . A T 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.490;QD=21.44;ReadPosRankSum=0.389;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2799,312,0 chrXIV 182462 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.77;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2798,312,0 chrXIV 182621 . T G 2801 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.90;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2834,324,0 chrXIV 182639 . A G 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.497;QD=21.91;ReadPosRankSum=1.611;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3188,357,0 chrXIV 183060 . T C 3000 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3033,345,0 chrXIV 183309 . A G 2726 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2759,315,0 chrXIV 183855 . A G 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=191;Dels=0.00;FS=7.812;HaplotypeScore=8.2430;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.534;QD=23.52;ReadPosRankSum=2.424;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4492,516,0 chrXIV 183942 . A G 4736.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.4515;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.45;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4736,555,0 chrXIV 184035 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.67;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3680,420,0 chrXIV 184146 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5470;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.61;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2881,321,0 chrXIV 184149 . T C 2774 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=3.7046;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.13;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2807,315,0 chrXIV 184332 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.926;QD=21.73;ReadPosRankSum=1.613;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2597,303,0 chrXIV 184449 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3133,354,0 chrXIV 184629 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.2010;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.65;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3832,441,0 chrXIV 184872 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.19;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4593,513,0 chrXIV 184882 . T C 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=0.919;QD=20.94;ReadPosRankSum=1.700;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4481,510,0 chrXIV 184944 . A G 4736.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.93;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4736,543,0 chrXIV 184992 . G A 4307.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.20;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4307,474,0 chrXIV 185309 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=66;Dels=0.00;FS=3.216;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.720;QD=20.83;ReadPosRankSum=1.679;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1408,165,0 chrXIV 185417 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.56;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3809,420,0 chrXIV 185516 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.79;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3430,372,0 chrXIV 185626 . A G 5203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=231;Dels=0.00;FS=2.675;HaplotypeScore=13.5663;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.685;QD=22.52;ReadPosRankSum=2.428;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:5203,591,0 chrXIV 185798 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=168;Dels=0.00;FS=8.815;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.701;QD=21.78;ReadPosRankSum=3.322;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:4,162:168:99:3659,429,0 chrXIV 185846 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.65;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3259,378,0 chrXIV 185896 . A G 3107 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.68;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3140,354,0 chrXIV 186475 . A T 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=155;Dels=0.00;FS=6.105;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.305;QD=21.93;ReadPosRankSum=2.864;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3399,384,0 chrXIV 186775 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=133;Dels=0.00;FS=8.313;HaplotypeScore=8.1733;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.214;QD=20.71;ReadPosRankSum=2.412;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2788,324,0 chrXIV 186892 . G T 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;MQRankSum=-1.407;QD=14.53;ReadPosRankSum=-0.054;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:963,108,0 chrXIV 186897 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=13.72;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:925,102,0 chrXIV 186913 . T C 648 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=13.50;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:681,75,0 chrXIV 186914 . T C 642 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=13.37;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:675,75,0 chrXIV 186921 . A G 752 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;MQRankSum=1.354;QD=13.43;ReadPosRankSum=1.606;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:90:785,90,0 chrXIV 186992 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.00;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1692,186,0 chrXIV 187346 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=119;Dels=0.00;FS=3.048;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.386;QD=23.11;ReadPosRankSum=2.366;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2783,312,0 chrXIV 187434 . G T 2468 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.4545;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.23;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2501,279,0 chrXIV 187730 . T A 2328 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.76;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2361,258,0 chrXIV 187769 . A G 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.337;QD=18.70;ReadPosRankSum=1.642;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1473,171,0 chrXIV 187803 . T C 1055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=10.348;HaplotypeScore=6.6566;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.613;QD=16.23;ReadPosRankSum=1.679;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1088,129,0 chrXIV 187821 . G T 934 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=18.31;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:967,108,0 chrXIV 187825 . A G 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-1.039;QD=17.42;ReadPosRankSum=1.594;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:904,105,0 chrXIV 187884 . A C 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.610;QD=16.55;ReadPosRankSum=1.683;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1208,141,0 chrXIV 187910 . A G 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.681;QD=15.94;ReadPosRankSum=1.681;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1101,123,0 chrXIV 188016 . G T 2027 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.30;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2060,234,0 chrXIV 188308 . G A 5861.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.63;SB=-3.243e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5861,639,0 chrXIV 188341 . T G 4881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.342;DP=233;Dels=0.00;FS=6.782;HaplotypeScore=14.8888;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.027;QD=20.95;ReadPosRankSum=0.585;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4881,552,0 chrXIV 188387 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=21.5864;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.82;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4456,492,0 chrXIV 189004 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.6415;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.37;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4787,537,0 chrXIV 189046 . C A 5325.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.8670;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.76;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5325,591,0 chrXIV 189221 . C T 5844.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=22.4951;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.97;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5844,648,0 chrXIV 189381 . G A 4972.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.68;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4972,552,0 chrXIV 189406 . A G 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=203;Dels=0.00;FS=3.008;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.079;QD=21.90;ReadPosRankSum=2.413;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4446,519,0 chrXIV 189445 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1966;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.39;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4058,480,0 chrXIV 189694 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.668;QD=22.77;ReadPosRankSum=1.707;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3269,378,0 chrXIV 189748 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.53;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3026,348,0 chrXIV 189922 . C G 2818 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=18.06;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2851,330,0 chrXIV 189937 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.62;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2901,333,0 chrXIV 189981 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=188;Dels=0.00;FS=3.033;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.259;QD=15.16;ReadPosRankSum=2.410;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,183:188:99:2883,333,0 chrXIV 189991 . T C 3098 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=15.57;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3131,363,0 chrXIV 190048 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=3.197;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.729;QD=17.36;ReadPosRankSum=1.677;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3315,387,0 chrXIV 190426 . G A 4495.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.16;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4495,495,0 chrXIV 190429 . C T 4530.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.13;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4530,498,0 chrXIV 190588 . T C 5340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.688;DP=246;Dels=0.00;FS=11.104;HaplotypeScore=16.1416;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.227;QD=21.71;ReadPosRankSum=3.771;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:5,240:246:99:5340,630,0 chrXIV 190801 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.21;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3268,360,0 chrXIV 190964 . A T 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.9944;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.130;QD=20.84;ReadPosRankSum=1.682;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1471,162,0 chrXIV 191137 . A G 1052 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.91;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1085,123,0 chrXIV 191177 . G A 1046 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.26;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1079,120,0 chrXIV 191184 . C A 1109 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.80;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1142,126,0 chrXIV 191241 . A G 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.6198;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.115;QD=18.83;ReadPosRankSum=1.699;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2029,213,0 chrXIV 191365 . T G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.562;QD=21.53;ReadPosRankSum=2.480;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2660,309,0 chrXIV 191566 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.8818;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.05;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3527,399,0 chrXIV 191916 . T C 5298.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.9760;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.24;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5298,600,0 chrXIV 192676 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2538,288,0 chrXIV 192780 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1748;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.90;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3561,396,0 chrXIV 193106 . T C 2946 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2979,336,0 chrXIV 193276 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2308,255,0 chrXIV 193628 . T G 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.400;QD=22.19;ReadPosRankSum=1.699;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2341,270,0 chrXIV 194047 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.58;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2132,240,0 chrXIV 194104 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.20;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2047,228,0 chrXIV 194143 . T A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.17;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3253,363,0 chrXIV 194260 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=118;Dels=0.00;FS=6.834;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.094;QD=20.73;ReadPosRankSum=2.408;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2479,282,0 chrXIV 194290 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=3.214;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-1.700;QD=18.45;ReadPosRankSum=1.669;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2044,231,0 chrXIV 194299 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.107;QD=17.75;ReadPosRankSum=1.640;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2074,243,0 chrXIV 194419 . T C 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=119;Dels=0.00;FS=8.241;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.657;QD=17.93;ReadPosRankSum=2.408;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2167,252,0 chrXIV 194420 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.36;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2200,246,0 chrXIV 194656 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6407;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=22.66;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3138,345,0 chrXIV 194716 . G A 2110 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.67;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2143,243,0 chrXIV 194725 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.58;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2072,237,0 chrXIV 194825 . A G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;MQRankSum=-0.997;QD=19.58;ReadPosRankSum=1.708;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2892,339,0 chrXIV 194833 . A G 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.138;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;MQRankSum=0.201;QD=18.99;ReadPosRankSum=1.707;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2673,309,0 chrXIV 194857 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=16.37;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2259,261,0 chrXIV 194860 . G T 2329 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=16.88;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2362,258,0 chrXIV 195019 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=17.83;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1941,225,0 chrXIV 195031 . T C 1882 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=17.59;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1915,225,0 chrXIV 195034 . A G 1846 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=16.48;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1879,225,0 chrXIV 195046 . A C 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;MQRankSum=1.046;QD=16.56;ReadPosRankSum=1.670;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:1888,228,0 chrXIV 195091 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=18.25;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1931,216,0 chrXIV 195358 . A C 3008 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.87;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3041,342,0 chrXIV 195766 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.7159;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.805;QD=21.17;ReadPosRankSum=1.715;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4233,477,0 chrXIV 195994 . G A 2341 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.36;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2374,264,0 chrXIV 196115 . A G 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.247;QD=20.20;ReadPosRankSum=1.670;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1164,132,0 chrXIV 196326 . T G 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.220;QD=21.27;ReadPosRankSum=2.315;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1586,180,0 chrXIV 196345 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.19;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1622,177,0 chrXIV 196819 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=2.783;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.511;QD=19.88;ReadPosRankSum=2.372;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3777,429,0 chrXIV 196822 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.44;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3707,426,0 chrXIV 196834 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.70;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4057,447,0 chrXIV 197191 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4252,486,0 chrXIV 197707 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.15;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3703,426,0 chrXIV 197710 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=19.52;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3885,423,0 chrXIV 197788 . C A 2591 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.12;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2624,291,0 chrXIV 198207 . A C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=98;Dels=0.00;FS=3.033;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.520;QD=19.49;ReadPosRankSum=2.399;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1943,222,0 chrXIV 198249 . T C 128.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.968;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3552;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-1.600;QD=1.47;ReadPosRankSum=2.393;SB=-4.131e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:21:161,21,0 chrXIV 198384 . T G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=145;Dels=0.00;FS=2.802;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.033;QD=19.97;ReadPosRankSum=2.415;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2928,339,0 chrXIV 198392 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.22;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3310,366,0 chrXIV 198574 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.2159;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.37;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3440,390,0 chrXIV 198636 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=17.99;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3760,414,0 chrXIV 198795 . T C 416 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=57;Dels=0.00;FS=15.702;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.797;QD=7.30;ReadPosRankSum=3.108;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:4,53:57:54:449,54,0 chrXIV 198796 . G C 397 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=7.09;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:51:430,51,0 chrXIV 198797 . G A 342 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=6.22;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:45:375,45,0 chrXIV 198937 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=20.4195;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.88;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4004,447,0 chrXIV 199403 . A G 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=198;Dels=0.00;FS=2.558;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.020;QD=21.98;ReadPosRankSum=2.883;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4353,498,0 chrXIV 199432 . T A 4810.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.96;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4810,531,0 chrXIV 199570 . A G 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=212;Dels=0.00;FS=15.608;HaplotypeScore=15.0625;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.647;QD=22.03;ReadPosRankSum=3.385;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:4,205:212:99:4671,543,0 chrXIV 199738 . C A 5001.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.3602;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.63;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5001,555,0 chrXIV 199813 . G C 4680.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.05;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4680,537,0 chrXIV 199873 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.7137;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.98;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3777,432,0 chrXIV 199979 . C A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.37;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3459,378,0 chrXIV 200003 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.82;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3606,399,0 chrXIV 200014 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=21.15;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3659,402,0 chrXIV 200066 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.39;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3380,369,0 chrXIV 200172 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.164;QD=22.29;ReadPosRankSum=1.705;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2886,333,0 chrXIV 200248 . A C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=1.492;QD=21.67;ReadPosRankSum=1.708;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3218,372,0 chrXIV 200718 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3877,444,0 chrXIV 201078 . T G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.01;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3487,405,0 chrXIV 201411 . A G 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.691;QD=21.62;ReadPosRankSum=1.716;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:4670,528,0 chrXIV 201441 . C T 4828.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.88;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4828,528,0 chrXIV 201732 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.41;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3519,384,0 chrXIV 201876 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.82;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1520,177,0 chrXIV 201918 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=18.58;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1389,165,0 chrXIV 201945 . A G 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;MQRankSum=-0.257;QD=20.91;ReadPosRankSum=1.668;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1162,135,0 chrXIV 201965 . T C 841 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=20.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:874,102,0 chrXIV 201973 . C T 582 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.40;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:72:615,72,0 chrXIV 201993 . C T 431 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.52;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:464,54,0 chrXIV 202301 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.69;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2574,297,0 chrXIV 202313 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.984;QD=21.18;ReadPosRankSum=1.677;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2680,306,0 chrXIV 202394 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.79;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3988,441,0 chrXIV 202414 . T A 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.446;QD=21.87;ReadPosRankSum=1.691;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3652,405,0 chrXIV 202510 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2242;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.943;QD=22.07;ReadPosRankSum=1.710;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3531,411,0 chrXIV 202644 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.6597;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.65;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3924,429,0 chrXIV 202649 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8950;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.65;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3733,423,0 chrXIV 202811 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.09;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3972,435,0 chrXIV 203039 . T A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4105,459,0 chrXIV 203300 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.69;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4035,444,0 chrXIV 204260 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=21.68;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3090,336,0 chrXIV 204270 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.42;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2932,324,0 chrXIV 204288 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=17.60;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2761,309,0 chrXIV 204319 . T C 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=-1.327;QD=13.56;ReadPosRankSum=1.710;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:2135,243,0 chrXIV 204325 . T C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;MQRankSum=-0.866;QD=13.17;ReadPosRankSum=1.710;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2141,243,0 chrXIV 204362 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=12.80;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2068,237,0 chrXIV 204368 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=12.23;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1880,210,0 chrXIV 204375 . A G 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=151;Dels=0.00;FS=3.749;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;MQRankSum=-1.331;QD=11.36;ReadPosRankSum=1.709;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,146:151:99:1748,207,0 chrXIV 204395 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=13.04;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2068,225,0 chrXIV 204437 . T A 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=7.018;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-1.879;QD=14.42;ReadPosRankSum=2.410;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:1835,216,0 chrXIV 204438 . T A 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=6.917;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-0.932;QD=15.12;ReadPosRankSum=2.411;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:1968,222,0 chrXIV 204752 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.47;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3178,351,0 chrXIV 204840 . C G 2324 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2357,264,0 chrXIV 204995 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.37;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2417,270,0 chrXIV 205138 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.01;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2311,261,0 chrXIV 205199 . T C 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.684;QD=17.13;ReadPosRankSum=1.684;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2482,288,0 chrXIV 205208 . T A 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.661;QD=17.62;ReadPosRankSum=1.664;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2712,297,0 chrXIV 205814 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.32;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3995,441,0 chrXIV 205874 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.39;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4344,477,0 chrXIV 206853 . A T 1934 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.17;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1967,225,0 chrXIV 206892 . A G 2292 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.69;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2325,261,0 chrXIV 207121 . T C 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.276;QD=19.79;ReadPosRankSum=1.682;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2784,321,0 chrXIV 207129 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-1.708;QD=18.50;ReadPosRankSum=1.659;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2679,315,0 chrXIV 207358 . T C 3043 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.2158;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.74;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3076,354,0 chrXIV 207879 . A G 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=85;Dels=0.00;FS=4.329;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.990;QD=23.68;ReadPosRankSum=1.608;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:2046,234,0 chrXIV 207991 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1961,216,0 chrXIV 208195 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2642,294,0 chrXIV 208275 . C G 2585 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2618,297,0 chrXIV 208358 . A G 2901 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6446;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.81;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2934,333,0 chrXIV 208912 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.28;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1714,198,0 chrXIV 209095 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.732;QD=22.13;ReadPosRankSum=1.661;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2180,258,0 chrXIV 209155 . G A 2080 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.64;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2113,228,0 chrXIV 210033 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.1170;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.95;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2247,258,0 chrXIV 210155 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.461;QD=21.60;ReadPosRankSum=1.640;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4060,474,0 chrXIV 210240 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.07;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3255,354,0 chrXIV 210438 . A T 3194 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.84;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3227,354,0 chrXIV 210474 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.37;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3436,372,0 chrXIV 210617 . A G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=129;Dels=0.00;FS=3.035;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.010;QD=21.72;ReadPosRankSum=2.411;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2835,327,0 chrXIV 210679 . A G 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=4.317;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.996;QD=23.44;ReadPosRankSum=1.705;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3010,345,0 chrXIV 210763 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.02;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3292,375,0 chrXIV 211003 . A G 3155 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.86;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3188,372,0 chrXIV 211753 . G T 1919 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.58;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1952,219,0 chrXIV 211765 . T C 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-0.682;QD=18.38;ReadPosRankSum=1.697;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1853,210,0 chrXIV 211791 . T C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=118;Dels=0.00;FS=5.971;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.095;QD=15.98;ReadPosRankSum=2.837;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:1919,225,0 chrXIV 211886 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.902;QD=18.97;ReadPosRankSum=1.696;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1892,219,0 chrXIV 211934 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.54;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2467,288,0 chrXIV 212052 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=144;Dels=0.00;FS=13.864;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.909;QD=22.85;ReadPosRankSum=2.895;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3290,372,0 chrXIV 212140 . A C 2765 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.94;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2798,324,0 chrXIV 212326 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=155;Dels=0.00;FS=2.866;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.515;QD=22.55;ReadPosRankSum=2.402;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3496,396,0 chrXIV 212353 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.20;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3596,390,0 chrXIV 212371 . A T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6578;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.51;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3467,387,0 chrXIV 212449 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.57;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3747,426,0 chrXIV 212482 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.54;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3517,405,0 chrXIV 212538 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.84;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3700,414,0 chrXIV 212569 . A C 3870.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.76;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3870,435,0 chrXIV 212601 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=152;Dels=0.00;FS=2.587;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.378;QD=23.70;ReadPosRankSum=2.888;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3602,414,0 chrXIV 212631 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.53;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2961,345,0 chrXIV 212716 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.89;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2685,291,0 chrXIV 213031 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.6252;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.08;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3090,357,0 chrXIV 213180 . C T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0256;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.59;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3671,417,0 chrXIV 213270 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.97;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3955,432,0 chrXIV 213493 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=3.036;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.774;QD=23.14;ReadPosRankSum=2.418;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3586,417,0 chrXIV 213556 . T A 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.951;HaplotypeScore=10.4937;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.687;QD=20.94;ReadPosRankSum=1.687;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3257,363,0 chrXIV 213580 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.29;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3014,342,0 chrXIV 213646 . A G 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=5.320;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.390;QD=21.40;ReadPosRankSum=2.905;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:2986,342,0 chrXIV 213670 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.45;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2693,300,0 chrXIV 213693 . A G 2625 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.52;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2658,306,0 chrXIV 213772 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=24.85;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3280,363,0 chrXIV 213814 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.261;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=-0.263;QD=24.07;ReadPosRankSum=1.704;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3042,348,0 chrXIV 213856 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=20.25;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2058,231,0 chrXIV 213861 . T A 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=-0.147;QD=19.54;ReadPosRankSum=1.622;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1870,216,0 chrXIV 214019 . C A 1896 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=16.21;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1929,222,0 chrXIV 214026 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=15.27;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1881,207,0 chrXIV 214030 . T A 1825 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;QD=15.60;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1858,207,0 chrXIV 214037 . A G 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=122;Dels=0.02;FS=3.352;HaplotypeScore=18.9745;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;MQRankSum=-0.801;QD=13.84;ReadPosRankSum=1.703;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1721,198,0 chrXIV 214071 . G A 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.819;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3437;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;MQRankSum=1.007;QD=14.62;ReadPosRankSum=1.571;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1919,213,0 chrXIV 214535 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.09;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3243,369,0 chrXIV 214622 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.30;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2932,321,0 chrXIV 214696 . G A 1829 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1862,216,0 chrXIV 214803 . A G 2113 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2146,246,0 chrXIV 214918 . T C 2535 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.63;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2568,294,0 chrXIV 215120 . T C 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.010;HaplotypeScore=11.9241;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.229;QD=22.41;ReadPosRankSum=1.704;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2812,330,0 chrXIV 215166 . G C 2656 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.6538;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.95;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2689,312,0 chrXIV 215285 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=19.5387;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4202,477,0 chrXIV 216026 . T A 1848 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1881,201,0 chrXIV 216647 . A T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.5285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3988,441,0 chrXIV 216919 . C A 2321 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2354,264,0 chrXIV 218774 . T G 2020 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6326;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.00;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,95:101:99:2053,243,0 chrXIV 218831 . G T 2351 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.05;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2384,258,0 chrXIV 218903 . A G 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.084;DP=81;Dels=0.00;FS=5.293;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.796;QD=21.49;ReadPosRankSum=3.346;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1774,198,0 chrXIV 218936 . T C 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.789;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-0.853;QD=21.33;ReadPosRankSum=1.681;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1462,165,0 chrXIV 219410 . A G 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.661;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.287;QD=20.04;ReadPosRankSum=1.594;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3059,357,0 chrXIV 220210 . C G 1615 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.41;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1648,186,0 chrXIV 220323 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.34;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1445,165,0 chrXIV 220440 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=22.72;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2055,228,0 chrXIV 220548 . T G 1465 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=0.536;QD=17.44;ReadPosRankSum=1.608;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1498,174,0 chrXIV 220550 . T G 1420 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.75;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1453,165,0 chrXIV 220551 . T A 1488 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=18.37;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1521,165,0 chrXIV 220597 . A G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;MQRankSum=-0.793;QD=17.32;ReadPosRankSum=1.703;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2077,243,0 chrXIV 220632 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=19.83;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2690,309,0 chrXIV 220655 . G T 2779 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.71;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2812,321,0 chrXIV 220663 . A T 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=135;Dels=0.00;FS=4.582;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.527;QD=18.76;ReadPosRankSum=1.681;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2566,285,0 chrXIV 220811 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=3.284;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.993;QD=21.14;ReadPosRankSum=1.711;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3467,390,0 chrXIV 220817 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=22.70;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3700,405,0 chrXIV 220827 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.5268;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.60;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3499,399,0 chrXIV 220950 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.56;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3666,417,0 chrXIV 221010 . C T 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.531;DP=151;Dels=0.00;FS=3.632;HaplotypeScore=12.3833;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.455;QD=21.12;ReadPosRankSum=-0.970;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3222,354,0 chrXIV 221673 . T A 2532 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2565,300,0 chrXIV 221973 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.35;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2290,255,0 chrXIV 222978 . C A 2274 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2307,255,0 chrXIV 223210 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1826,207,0 chrXIV 223453 . T A 1654 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.76;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1687,195,0 chrXIV 224132 . T C 2584 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.09;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2617,297,0 chrXIV 224654 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.27;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1382,156,0 chrXIV 224659 . G T 1403 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.49;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1436,159,0 chrXIV 224991 . A G 2040 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.70;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2073,234,0 chrXIV 225318 . T A 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=3.044;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.067;QD=24.41;ReadPosRankSum=2.373;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3158,348,0 chrXIV 225417 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=166;Dels=0.00;FS=2.524;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.424;QD=22.51;ReadPosRankSum=2.958;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3737,423,0 chrXIV 225699 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=6.990;HaplotypeScore=15.0862;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.307;QD=17.15;ReadPosRankSum=1.665;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,154:156:99:2708,321,0 chrXIV 226011 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.63;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2736,303,0 chrXIV 226015 . G T 2655 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.96;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2688,294,0 chrXIV 226094 . C G 3466.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.95;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3466,393,0 chrXIV 226114 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.90;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3458,381,0 chrXIV 226134 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=8.585;HaplotypeScore=10.6024;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.530;QD=22.13;ReadPosRankSum=2.402;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3452,390,0 chrXIV 226418 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.8439;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.20;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4161,483,0 chrXIV 226500 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3572,411,0 chrXIV 226580 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=190;Dels=0.00;FS=2.950;HaplotypeScore=14.2027;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.425;QD=20.43;ReadPosRankSum=2.397;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:3882,444,0 chrXIV 226950 . A T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.87;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3543,393,0 chrXIV 227377 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.31;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2999,330,0 chrXIV 227455 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.63;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3020,333,0 chrXIV 227572 . A G 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.9398;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.738;QD=20.17;ReadPosRankSum=1.700;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2252,255,0 chrXIV 227933 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=159;Dels=0.00;FS=6.442;HaplotypeScore=10.0573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.584;QD=20.86;ReadPosRankSum=2.419;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3316,390,0 chrXIV 228428 . C A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3700,414,0 chrXIV 228513 . G A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4174,477,0 chrXIV 228789 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.2455;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3791,420,0 chrXIV 229890 . C T 1830 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=64.1360;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.32;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1863,213,0 chrXIV 230293 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=5.0559;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.95;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2023,225,0 chrXIV 230322 . A G 2124 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.82;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2157,252,0 chrXIV 230542 . A G 2994 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.70;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3027,348,0 chrXIV 230599 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=13.5217;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.26;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2927,324,0 chrXIV 230706 . T C 1997 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.77;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2030,228,0 chrXIV 230725 . T C 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=3.854;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.087;QD=19.20;ReadPosRankSum=1.664;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2011,228,0 chrXIV 230897 . C A 2067 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.97;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2100,237,0 chrXIV 230938 . A T 1981 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=99.5503;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=18.69;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2014,231,0 chrXIV 230962 . G T 2301 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.98;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2334,261,0 chrXIV 231034 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.05;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3076,333,0 chrXIV 231302 . C T 5171.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.72;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5171,567,0 chrXIV 231331 . A G 4986.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.58;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4986,564,0 chrXIV 231369 . T C 5281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=19.7733;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.360;QD=21.82;ReadPosRankSum=2.952;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:4,236:242:99:5281,609,0 chrXIV 231426 . A G 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=218;Dels=0.00;FS=4.792;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.972;QD=23.42;ReadPosRankSum=1.980;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:4,214:218:99:5105,567,0 chrXIV 231454 . C A 4753.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.0967;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.88;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4753,522,0 chrXIV 231593 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=21.7264;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.67;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4529,498,0 chrXIV 232086 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=177;Dels=0.00;FS=6.080;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.074;QD=21.57;ReadPosRankSum=2.892;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:3817,432,0 chrXIV 232241 . G A 4324.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.1927;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.95;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4324,480,0 chrXIV 232438 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.24;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4300,471,0 chrXIV 232508 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=186;Dels=0.00;FS=2.653;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.618;QD=22.83;ReadPosRankSum=2.357;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4246,483,0 chrXIV 232625 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3323,372,0 chrXIV 232914 . A G 2897 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1756;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.84;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2930,339,0 chrXIV 233237 . G C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.86;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3704,429,0 chrXIV 233498 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=187;Dels=0.00;FS=9.170;HaplotypeScore=6.5283;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.772;QD=18.36;ReadPosRankSum=2.423;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,181:187:99:3433,390,0 chrXIV 233507 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8143;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.95;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3411,390,0 chrXIV 233560 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.4892;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.03;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3336,375,0 chrXIV 233585 . C G 3126 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.3133;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.06;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3159,363,0 chrXIV 233609 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=157;Dels=0.00;FS=2.586;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.737;QD=19.27;ReadPosRankSum=2.917;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3058,354,0 chrXIV 233757 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.80;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3401,387,0 chrXIV 233879 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.68;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3274,363,0 chrXIV 233897 . A G 3187 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.56;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3220,369,0 chrXIV 234325 . G A 2180 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2213,243,0 chrXIV 234916 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=182;Dels=0.00;FS=2.957;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.580;QD=22.72;ReadPosRankSum=2.422;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4135,483,0 chrXIV 235351 . C T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.3249;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.05;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4433,495,0 chrXIV 235423 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.93;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2584,285,0 chrXIV 235424 . T C 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=5.051;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.622;QD=19.08;ReadPosRankSum=1.705;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2475,282,0 chrXIV 235706 . A C 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.717;QD=20.78;ReadPosRankSum=2.867;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1446,165,0 chrXIV 236810 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=154;Dels=0.00;FS=3.661;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.424;QD=23.21;ReadPosRankSum=1.663;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3574,414,0 chrXIV 236860 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.92;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3780,426,0 chrXIV 237099 . T C 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.651;QD=24.55;ReadPosRankSum=1.712;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4247,486,0 chrXIV 237160 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3370,369,0 chrXIV 237307 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3337,372,0 chrXIV 237756 . T G 2889 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.24;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2922,330,0 chrXIV 237804 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.78;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3225,354,0 chrXIV 237805 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.49;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3158,357,0 chrXIV 237838 . T G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.870;QD=20.12;ReadPosRankSum=1.714;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3963,453,0 chrXIV 238024 . T C 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=189;Dels=0.00;FS=17.916;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.265;QD=22.40;ReadPosRankSum=3.348;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:4,184:189:99:4233,489,0 chrXIV 238178 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=188;Dels=0.00;FS=8.864;HaplotypeScore=11.4041;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.617;QD=23.52;ReadPosRankSum=2.410;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,183:188:99:4422,501,0 chrXIV 238429 . A G 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.954;DP=202;Dels=0.00;FS=13.855;HaplotypeScore=21.2944;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.033;QD=21.74;ReadPosRankSum=4.135;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:6,192:202:99:4391,504,0 chrXIV 238793 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.2666;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.71;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4126,450,0 chrXIV 238825 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.42;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3651,414,0 chrXIV 238830 . G C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.67;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,173:178:99:3501,399,0 chrXIV 238927 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.558;DP=168;Dels=0.00;FS=5.872;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.533;QD=20.64;ReadPosRankSum=2.958;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:3,163:168:99:3468,374,0 chrXIV 238963 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=185;Dels=0.00;FS=3.303;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.734;QD=17.98;ReadPosRankSum=1.713;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3327,375,0 chrXIV 238966 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=187;Dels=0.00;FS=6.480;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.082;QD=17.16;ReadPosRankSum=2.396;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:3242,372,0 chrXIV 239023 . A G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.083;QD=17.49;ReadPosRankSum=1.711;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2937,342,0 chrXIV 239950 . A G 3011 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.14;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3044,345,0 chrXIV 239987 . T G 2523 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.18;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2556,282,0 chrXIV 240005 . A C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=6.140;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-0.321;QD=18.38;ReadPosRankSum=2.405;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2073,243,0 chrXIV 240009 . T C 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=107;Dels=0.00;FS=3.042;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.840;QD=18.02;ReadPosRankSum=2.312;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1961,222,0 chrXIV 240152 . A G 3026 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1101;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.01;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3059,351,0 chrXIV 240414 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=186;Dels=0.00;FS=13.362;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.840;QD=18.09;ReadPosRankSum=3.394;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:4,182:186:99:3365,390,0 chrXIV 240441 . G A 4694.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.14;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4694,534,0 chrXIV 240587 . G C 3095 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.95;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3128,357,0 chrXIV 240602 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.586;HaplotypeScore=2.7254;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.872;QD=20.10;ReadPosRankSum=1.687;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3108,357,0 chrXIV 240624 . C T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.01;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3403,372,0 chrXIV 240753 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.54;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3403,381,0 chrXIV 240783 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=145;Dels=0.00;FS=13.626;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.262;QD=21.00;ReadPosRankSum=3.398;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:4,141:145:99:3078,360,0 chrXIV 240840 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.5692;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.85;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4086,468,0 chrXIV 240933 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=168;Dels=0.00;FS=5.402;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.252;QD=23.39;ReadPosRankSum=2.934;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3930,453,0 chrXIV 241136 . G A 4689.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.05;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4689,519,0 chrXIV 241440 . G T 2025 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.25;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2058,228,0 chrXIV 242111 . C T 6793.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=26.8783;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.72;SB=-3.758e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:6793,750,0 chrXIV 242307 . T C 5311.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.32;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5311,603,0 chrXIV 242579 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.76;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3903,426,0 chrXIV 242589 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=189;Dels=0.00;FS=8.134;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.581;QD=18.44;ReadPosRankSum=2.410;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:3486,399,0 chrXIV 242759 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.92;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4114,450,0 chrXIV 243194 . G T 3200 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.0781;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.88;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3233,354,0 chrXIV 243291 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.67;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3877,423,0 chrXIV 243530 . A T 2449 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2482,279,0 chrXIV 244185 . A T 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=2.926;HaplotypeScore=6.8498;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.999;QD=21.51;ReadPosRankSum=2.204;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2614,291,0 chrXIV 245040 . C A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8678;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.33;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4340,486,0 chrXIV 245109 . G T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.33;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3455,402,0 chrXIV 245307 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3276,375,0 chrXIV 245680 . A G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.535;QD=22.16;ReadPosRankSum=2.392;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2892,333,0 chrXIV 246824 . A G 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.342;QD=22.10;ReadPosRankSum=2.401;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2265,255,0 chrXIV 247053 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.20;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3437,378,0 chrXIV 247144 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.33;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2891,318,0 chrXIV 247168 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.17;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2637,291,0 chrXIV 247212 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.6271;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.15;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2618,288,0 chrXIV 247235 . T A 2615 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.37;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2648,291,0 chrXIV 247691 . T C 4225.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.6341;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.84;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4225,486,0 chrXIV 248207 . A T 2786 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.47;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2819,312,0 chrXIV 248227 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.687;QD=20.37;ReadPosRankSum=1.702;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2396,276,0 chrXIV 248236 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.69;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2388,273,0 chrXIV 249065 . C A 2598 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.65;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2631,288,0 chrXIV 249509 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.53;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3257,360,0 chrXIV 249542 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.85;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3004,339,0 chrXIV 249569 . T A 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.155;QD=21.33;ReadPosRankSum=1.705;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2721,297,0 chrXIV 249918 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.29;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1850,204,0 chrXIV 249969 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.90;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1486,168,0 chrXIV 249988 . A G 1199 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=16.89;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1232,144,0 chrXIV 249991 . G A 1283 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=17.34;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1316,153,0 chrXIV 250012 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=15.99;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1136,126,0 chrXIV 250031 . A T 1341 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=17.42;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1374,150,0 chrXIV 250148 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.22;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2164,237,0 chrXIV 250357 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.17;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2595,285,0 chrXIV 250382 . T C 2432 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.7997;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.73;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2465,282,0 chrXIV 250456 . C G 1958 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1991,237,0 chrXIV 250504 . G T 2506 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.42;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2539,282,0 chrXIV 250567 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.30;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2687,294,0 chrXIV 250720 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.45;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2843,324,0 chrXIV 250834 . T C 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.430;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.433;QD=20.46;ReadPosRankSum=1.687;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3143,357,0 chrXIV 250840 . T C 2927 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.13;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2960,342,0 chrXIV 250896 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.71;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1941,216,0 chrXIV 251149 . T C 2056 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.63;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2089,243,0 chrXIV 251257 . G A 1959 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1992,228,0 chrXIV 251477 . C G 2456 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.39;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2489,288,0 chrXIV 251609 . A G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.9091;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.164;QD=21.49;ReadPosRankSum=-1.125;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:3041,334,0 chrXIV 252203 . C G 4892.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4892,552,0 chrXIV 253072 . C T 1761 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=30;QD=16.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,102:106:99:1794,201,0 chrXIV 253087 . T C 1833 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=21;MQRankSum=-2.420;QD=17.80;ReadPosRankSum=2.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1866,216,0 chrXIV 253156 . T C 3941.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3772;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=26;MQRankSum=-1.417;QD=20.21;ReadPosRankSum=2.421;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:11,184:195:99:3941,453,0 chrXIV 254039 . T C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.178;QD=22.70;ReadPosRankSum=1.677;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2871,324,0 chrXIV 254149 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2441,276,0 chrXIV 254281 . A G 2807 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.10;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2840,321,0 chrXIV 254565 . G A 6732.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.24;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,315:317:99:6732,771,0 chrXIV 254579 . C T 7177.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=11.4378;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.36;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,321:321:99:7177,798,0 chrXIV 254632 . T C 7767.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=12.0891;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=0.871;QD=21.46;ReadPosRankSum=1.722;SB=-4.220e+03 GT:AD:DP:GQ:PL 1/1:1,361:362:99:7767,900,0 chrXIV 254807 . C T 6577.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=19.1743;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.28;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:6577,732,0 chrXIV 254872 . A G 1394.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;DP=287;Dels=0.00;FS=18.614;HaplotypeScore=7.8476;MLEAC=1;MLEAF=0.500;MQ=43.79;MQ0=0;MQRankSum=-5.203;QD=4.86;ReadPosRankSum=-7.502;SB=-9.310e+02 GT:AD:DP:GQ:PL 0/1:176,110:287:99:1424,0,1516 chrXIV 254873 . G A 1360.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.611;DP=287;Dels=0.00;FS=17.174;HaplotypeScore=6.9535;MLEAC=1;MLEAF=0.500;MQ=43.79;MQ0=0;MQRankSum=-3.205;QD=4.74;ReadPosRankSum=-8.304;SB=-9.400e+02 GT:AD:DP:GQ:PL 0/1:175,109:286:99:1390,0,1453 chrXIV 254879 . T A 985.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DP=273;Dels=0.00;FS=14.577;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=43.84;MQ0=0;MQRankSum=-6.616;QD=3.61;ReadPosRankSum=-9.388;SB=-7.410e+02 GT:AD:DP:GQ:PL 0/1:184,89:273:99:1015,0,1713 chrXIV 254885 . A T 447.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.842;DP=268;Dels=0.00;FS=10.913;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=45.11;MQ0=0;MQRankSum=-5.448;QD=1.67;ReadPosRankSum=-8.962;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:202,66:268:99:477,0,2114 chrXIV 254966 . G A 2892 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.08;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2925,324,0 chrXIV 255192 . C T 2263 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.82;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2296,252,0 chrXIV 255432 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.99;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3474,378,0 chrXIV 255895 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.26;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2964,342,0 chrXIV 256217 . A G 3192 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.48;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3225,363,0 chrXIV 256252 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.25;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2881,321,0 chrXIV 256273 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.56;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2706,300,0 chrXIV 256778 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.48;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1837,207,0 chrXIV 256787 . G C 1668 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.59;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1701,192,0 chrXIV 256789 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.45;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1710,192,0 chrXIV 256857 . A G 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=4.694;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.206;QD=19.33;ReadPosRankSum=1.701;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2198,255,0 chrXIV 256929 . A G 2670 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.53;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2703,318,0 chrXIV 257055 . G A 5052.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.4132;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.05;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5052,561,0 chrXIV 257114 . C T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.57;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4357,495,0 chrXIV 257376 . G C 4632.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.9859;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.38;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4632,546,0 chrXIV 257459 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.35;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2935,324,0 chrXIV 257463 . G A 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.186;DP=149;Dels=0.00;FS=3.318;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.475;QD=17.79;ReadPosRankSum=0.071;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:2683,287,0 chrXIV 257472 . A G 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.646;QD=17.92;ReadPosRankSum=1.646;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2918,339,0 chrXIV 257568 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.15;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2558,285,0 chrXIV 257643 . A C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.087;QD=21.05;ReadPosRankSum=1.707;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2959,339,0 chrXIV 257904 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.84;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3319,390,0 chrXIV 257986 . A T 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.089;QD=23.90;ReadPosRankSum=1.656;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3274,357,0 chrXIV 258010 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.94;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2995,330,0 chrXIV 258013 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.33;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2827,312,0 chrXIV 258241 . A T 2075 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.61;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2108,231,0 chrXIV 258253 . G A 2306 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.75;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2339,258,0 chrXIV 258320 . A T 1245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.444;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.586;QD=17.54;ReadPosRankSum=2.901;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1278,150,0 chrXIV 258392 . G C 931 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=14.32;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:964,111,0 chrXIV 258399 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=14.35;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1052,123,0 chrXIV 258589 . T A 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=-1.463;QD=21.30;ReadPosRankSum=1.698;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2227,246,0 chrXIV 258590 . G C 2132 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.11;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2165,243,0 chrXIV 258735 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7483;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.59;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2602,306,0 chrXIV 258795 . A G 2785 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.93;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2818,330,0 chrXIV 258883 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.42;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3341,366,0 chrXIV 258967 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.98;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2558,291,0 chrXIV 258971 . T G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=138;Dels=0.00;FS=2.982;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.497;QD=19.03;ReadPosRankSum=2.395;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2659,300,0 chrXIV 259149 . G A 2690 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.87;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2723,300,0 chrXIV 259283 . A G 3088 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.0468;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.72;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3121,366,0 chrXIV 259408 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.17;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2744,300,0 chrXIV 259493 . A T 2351 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=18.96;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2384,279,0 chrXIV 259503 . T G 2063 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=16.12;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2096,246,0 chrXIV 259517 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=15.08;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1903,213,0 chrXIV 259524 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=14.15;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1972,219,0 chrXIV 259563 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.67;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3342,369,0 chrXIV 259650 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2569,306,0 chrXIV 259694 . A G 2504 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.36;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2537,300,0 chrXIV 259989 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.36;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3622,399,0 chrXIV 260057 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.0571;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.07;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2688,300,0 chrXIV 260099 . A C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.324;QD=22.37;ReadPosRankSum=1.704;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2807,315,0 chrXIV 260108 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.45;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2615,291,0 chrXIV 260234 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2568,285,0 chrXIV 260586 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.62;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1979,222,0 chrXIV 260605 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.11;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1903,210,0 chrXIV 260618 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.71;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1689,189,0 chrXIV 261617 . T G 2971 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.21;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3004,351,0 chrXIV 261794 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.38;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3782,429,0 chrXIV 261806 . A G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.199;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.514;QD=19.28;ReadPosRankSum=1.711;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3214,375,0 chrXIV 261812 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.95;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3260,372,0 chrXIV 262159 . G T 3006 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.95;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3039,336,0 chrXIV 262244 . G T 2755 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.87;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2788,324,0 chrXIV 262301 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.55;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2352,261,0 chrXIV 262513 . T G 2148 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2181,252,0 chrXIV 263036 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3889,447,0 chrXIV 263848 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.52;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3622,399,0 chrXIV 263968 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=4.362;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.591;QD=22.11;ReadPosRankSum=1.652;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3803,429,0 chrXIV 264142 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.13;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3571,393,0 chrXIV 264232 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=151;Dels=0.00;FS=4.543;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.632;QD=19.99;ReadPosRankSum=1.685;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3052,351,0 chrXIV 264468 . G T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.7239;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.10;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3544,408,0 chrXIV 264537 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=162;Dels=0.00;FS=3.092;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.689;QD=21.36;ReadPosRankSum=1.711;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3460,393,0 chrXIV 264607 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.849;DP=113;Dels=0.00;FS=2.525;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.705;QD=20.76;ReadPosRankSum=1.902;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2379,256,0 chrXIV 265328 . C T 5247.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5247,582,0 chrXIV 265388 . G A 5038.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.9551;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.11;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:5038,552,0 chrXIV 266015 . C A 4646.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.34;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4646,528,0 chrXIV 266760 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3091,360,0 chrXIV 267222 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2117,228,0 chrXIV 267267 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1279,147,0 chrXIV 267429 . G A 760 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:793,90,0 chrXIV 267621 . T C 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.214;QD=23.63;ReadPosRankSum=1.666;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2514,288,0 chrXIV 268398 . T G 6324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.051;QD=23.42;ReadPosRankSum=1.642;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:6324,717,0 chrXIV 268664 . T C 5527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=20.2180;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.946;QD=20.94;ReadPosRankSum=1.705;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:1,259:264:99:5527,645,0 chrXIV 269266 . C G 5471.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.98;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5471,609,0 chrXIV 269711 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.580;DP=172;Dels=0.00;FS=6.032;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.272;QD=21.86;ReadPosRankSum=2.959;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3760,417,0 chrXIV 270074 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=21.00;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1377,156,0 chrXIV 270079 . C A 1226 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=20.78;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1259,138,0 chrXIV 270094 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=19.11;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1084,120,0 chrXIV 270107 . T G 1157 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=18.37;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1190,135,0 chrXIV 270129 . A T 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=0;MQRankSum=-1.684;QD=19.82;ReadPosRankSum=1.684;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1460,159,0 chrXIV 270133 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=18.51;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1440,168,0 chrXIV 270160 . T C 1703 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=18.12;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1736,201,0 chrXIV 270214 . T C 1354 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=18.55;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1387,162,0 chrXIV 270237 . T A 560 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=15.14;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:593,72,0 chrXIV 270238 . A T 585 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=15.81;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:618,75,0 chrXIV 270239 . C T 608 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=16.00;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:641,75,0 chrXIV 270241 . A T 649 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=16.22;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:682,75,0 chrXIV 270523 . T G 5686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=244;Dels=0.00;FS=2.806;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.117;QD=23.30;ReadPosRankSum=2.327;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,240:244:99:5686,636,0 chrXIV 270547 . A G 5599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=252;Dels=0.00;FS=4.406;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.959;QD=22.22;ReadPosRankSum=1.704;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:5599,651,0 chrXIV 270838 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.58;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3349,363,0 chrXIV 270998 . A C 1296 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.8722;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=16.20;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1329,150,0 chrXIV 271001 . T C 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6609;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.845;QD=17.79;ReadPosRankSum=1.605;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1492,177,0 chrXIV 271098 . T G 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.742;QD=17.47;ReadPosRankSum=1.449;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1745,204,0 chrXIV 271256 . G C 2686 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.56;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2719,312,0 chrXIV 271443 . T A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.48;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3304,366,0 chrXIV 271707 . T G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.201;DP=170;Dels=0.00;FS=8.789;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.980;QD=21.16;ReadPosRankSum=3.387;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:4,165:170:99:3597,411,0 chrXIV 271772 . C T 4869.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.65;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4869,537,0 chrXIV 272027 . C T 5252.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.3645;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.44;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5252,573,0 chrXIV 272042 . A G 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.546;QD=19.00;ReadPosRankSum=1.719;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:1,256:259:99:4922,576,0 chrXIV 272165 . C T 4354.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.45;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4354,489,0 chrXIV 272328 . A G 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=205;Dels=0.00;FS=2.866;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=2.425;QD=22.34;ReadPosRankSum=2.389;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4580,519,0 chrXIV 272416 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.112;QD=21.58;ReadPosRankSum=2.405;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3560,411,0 chrXIV 272546 . T A 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=9.731;HaplotypeScore=8.7121;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.485;QD=20.71;ReadPosRankSum=2.397;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1980,222,0 chrXIV 272669 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.66;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2423,267,0 chrXIV 272818 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=4.219;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.841;QD=21.18;ReadPosRankSum=1.658;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3020,348,0 chrXIV 272830 . A G 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.027;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.009;QD=22.09;ReadPosRankSum=1.682;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3103,348,0 chrXIV 272905 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.281;QD=22.05;ReadPosRankSum=1.691;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3749,423,0 chrXIV 272956 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.39;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3658,399,0 chrXIV 273091 . C T 4444.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.39;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4444,495,0 chrXIV 273306 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=184;Dels=0.00;FS=5.610;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.044;QD=21.97;ReadPosRankSum=2.940;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4043,471,0 chrXIV 273490 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.3224;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.89;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3552,402,0 chrXIV 274328 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.38;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4290,474,0 chrXIV 274637 . T A 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.602;QD=19.84;ReadPosRankSum=1.683;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2831,327,0 chrXIV 274650 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=20.25;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2969,327,0 chrXIV 274676 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.7441;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.57;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3144,348,0 chrXIV 274721 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=17.12;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2293,264,0 chrXIV 274731 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.80;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2675,294,0 chrXIV 274808 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=144;Dels=0.00;FS=3.037;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.521;QD=22.33;ReadPosRankSum=2.381;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3249,369,0 chrXIV 275212 . T A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.20;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3374,372,0 chrXIV 275298 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.27;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3421,387,0 chrXIV 275396 . C T 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.662;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.9247;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.707;QD=22.94;ReadPosRankSum=0.841;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3199,357,0 chrXIV 275437 . T C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=136;Dels=0.00;FS=3.027;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.202;QD=22.97;ReadPosRankSum=2.305;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3157,354,0 chrXIV 275457 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.07;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3023,345,0 chrXIV 275934 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.449;QD=23.07;ReadPosRankSum=2.405;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3853,444,0 chrXIV 276118 . A C 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0535;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.693;QD=22.14;ReadPosRankSum=1.659;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4207,489,0 chrXIV 276149 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.035;QD=20.60;ReadPosRankSum=1.710;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3246,375,0 chrXIV 276318 . T G 2207 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.22;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2240,261,0 chrXIV 276550 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.31;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3022,342,0 chrXIV 276799 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.71;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4234,483,0 chrXIV 276831 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=198;Dels=0.00;FS=3.021;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.953;QD=20.65;ReadPosRankSum=2.375;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4089,459,0 chrXIV 276852 . G C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.60;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:3924,456,0 chrXIV 276870 . G A 4373.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.5937;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.61;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4373,486,0 chrXIV 277361 . G A 5067.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5067,555,0 chrXIV 277497 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.38;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4115,471,0 chrXIV 277707 . A T 5192.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.71;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5192,585,0 chrXIV 277752 . A G 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=7.157;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.607;QD=23.23;ReadPosRankSum=2.343;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4274,486,0 chrXIV 277797 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.59;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3648,417,0 chrXIV 277803 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.03;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3596,399,0 chrXIV 277953 . T A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=21.9624;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.92;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3828,438,0 chrXIV 278273 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=22.98;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3493,390,0 chrXIV 278278 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=22.17;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3347,363,0 chrXIV 278286 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.26;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3158,357,0 chrXIV 278430 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.82;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3228,369,0 chrXIV 278571 . A G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=2.785;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.756;QD=22.74;ReadPosRankSum=2.408;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2716,315,0 chrXIV 278625 . T C 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.858;DP=121;Dels=0.00;FS=2.128;HaplotypeScore=9.4368;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.775;QD=20.98;ReadPosRankSum=2.659;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2571,294,0 chrXIV 278691 . T C 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=3.034;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.742;QD=21.39;ReadPosRankSum=2.394;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2878,324,0 chrXIV 278757 . A G 2273 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.73;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2306,264,0 chrXIV 278850 . T C 3011 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.64;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3044,354,0 chrXIV 279061 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.3335;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.897;QD=19.92;ReadPosRankSum=1.683;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2882,330,0 chrXIV 279072 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=6.769;HaplotypeScore=6.5547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.865;QD=20.76;ReadPosRankSum=2.417;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3189,360,0 chrXIV 279171 . C A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.95;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3771,420,0 chrXIV 279177 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=176;Dels=0.00;FS=2.859;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.589;QD=19.97;ReadPosRankSum=2.421;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:3515,393,0 chrXIV 279204 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.57;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3036,333,0 chrXIV 279267 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=3.586;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.038;QD=21.80;ReadPosRankSum=1.656;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3042,351,0 chrXIV 279444 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.26;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3030,336,0 chrXIV 279537 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.059;QD=20.20;ReadPosRankSum=1.707;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2901,333,0 chrXIV 279624 . T A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.79;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3520,393,0 chrXIV 279865 . G T 1359 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.28;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1392,150,0 chrXIV 279881 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.47;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1104,129,0 chrXIV 279996 . G A 582 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=18.19;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:69:615,69,0 chrXIV 280016 . C A 643 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=18.91;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:676,75,0 chrXIV 280091 . C A 1132 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.64;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1165,129,0 chrXIV 280112 . C T 1000 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.22;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1033,114,0 chrXIV 280158 . T C 822 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.05;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:855,96,0 chrXIV 280224 . A T 1777 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.38;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1810,198,0 chrXIV 280509 . C A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.31;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3570,414,0 chrXIV 280587 . C T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4760;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.86;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4581,504,0 chrXIV 280722 . C T 4791.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.71;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4791,531,0 chrXIV 281055 . G A 5706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.3593;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.450;QD=23.01;ReadPosRankSum=1.197;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5706,616,0 chrXIV 281100 . C T 5670.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.3557;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.33;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5670,636,0 chrXIV 281196 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.38;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4475,492,0 chrXIV 281259 . G A 4865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.696;QD=23.50;ReadPosRankSum=0.679;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:4865,534,0 chrXIV 281316 . A G 5300.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=18.1433;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.36;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5300,618,0 chrXIV 281521 . G A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.8318;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.08;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4593,501,0 chrXIV 281634 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.89;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3010,330,0 chrXIV 281655 . A G 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.215;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.6851;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.226;QD=18.94;ReadPosRankSum=1.353;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2628,300,0 chrXIV 282032 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2320,255,0 chrXIV 282589 . C T 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DP=383;Dels=0.00;FS=2.976;HaplotypeScore=27.8487;MLEAC=1;MLEAF=0.500;MQ=45.65;MQ0=1;MQRankSum=-8.310;QD=0.31;ReadPosRankSum=-1.628;SB=-7.750e+02 GT:AD:DP:GQ:PL 0/1:267,116:383:99:149,0,4994 chrXIV 282592 . T C 272.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.973;DP=404;Dels=0.00;FS=7.023;HaplotypeScore=25.4392;MLEAC=1;MLEAF=0.500;MQ=45.59;MQ0=1;MQRankSum=-7.981;QD=0.67;ReadPosRankSum=-0.816;SB=-9.200e+02 GT:AD:DP:GQ:PL 0/1:273,128:404:99:302,0,5179 chrXIV 282628 . C A 8002.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;DP=451;Dels=0.00;FS=0.000;HaplotypeScore=18.4984;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=1;MQRankSum=-1.493;QD=17.74;ReadPosRankSum=-1.639;SB=-5.352e+03 GT:AD:DP:GQ:PL 1/1:1,449:451:99:8002,897,0 chrXIV 282667 . T C 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=18.1446;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=2;MQRankSum=-0.371;QD=17.08;ReadPosRankSum=1.212;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:1,281:286:99:4885,558,0 chrXIV 282685 . T C 609.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.809;DP=169;Dels=0.00;FS=1.245;HaplotypeScore=16.3727;MLEAC=1;MLEAF=0.500;MQ=49.85;MQ0=1;MQRankSum=-6.450;QD=3.60;ReadPosRankSum=-3.979;SB=-4.690e+02 GT:AD:DP:GQ:PL 0/1:98,67:169:99:639,0,1839 chrXIV 282688 . C A 323.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;DP=149;Dels=0.00;FS=3.059;HaplotypeScore=10.0633;MLEAC=1;MLEAF=0.500;MQ=49.60;MQ0=2;MQRankSum=-5.054;QD=2.17;ReadPosRankSum=-3.401;SB=-2.930e+02 GT:AD:DP:GQ:PL 0/1:92,57:149:99:353,0,1577 chrXIV 282694 . C T 109.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DP=109;Dels=0.00;FS=10.450;HaplotypeScore=9.2859;MLEAC=1;MLEAF=0.500;MQ=49.28;MQ0=2;MQRankSum=-3.912;QD=1.00;ReadPosRankSum=-2.380;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:70,36:109:99:139,0,1253 chrXIV 282700 . T C 260.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;DP=95;Dels=0.00;FS=21.034;HaplotypeScore=9.2859;MLEAC=1;MLEAF=0.500;MQ=51.32;MQ0=2;MQRankSum=-0.414;QD=2.74;ReadPosRankSum=-0.841;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:58,36:95:99:290,0,945 chrXIV 282709 . T C 491.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DP=89;Dels=0.00;FS=4.161;HaplotypeScore=11.7208;MLEAC=1;MLEAF=0.500;MQ=51.29;MQ0=2;MQRankSum=0.391;QD=5.52;ReadPosRankSum=-3.490;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:52,37:89:99:521,0,647 chrXIV 282712 . C T 310.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;DP=84;Dels=0.00;FS=10.172;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=52.01;MQ0=2;MQRankSum=-0.169;QD=3.69;ReadPosRankSum=-3.553;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/1:58,25:84:99:340,0,746 chrXIV 282745 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=1;QD=16.82;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1950,216,0 chrXIV 282751 . A G 1921 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=1;QD=15.01;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:1954,228,0 chrXIV 282787 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.689;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=2;MQRankSum=-1.467;QD=16.86;ReadPosRankSum=0.424;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:3372,378,0 chrXIV 282805 . C T 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=2;MQRankSum=-1.292;QD=15.92;ReadPosRankSum=-0.818;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:3232,363,0 chrXIV 282820 . C T 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.009;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=2;MQRankSum=-1.374;QD=15.55;ReadPosRankSum=-1.493;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:3221,357,0 chrXIV 282824 . A G 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.101;DP=211;Dels=0.00;FS=2.567;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=2;MQRankSum=-0.120;QD=15.24;ReadPosRankSum=1.236;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:4,207:211:99:3248,378,0 chrXIV 283235 . G C 2702 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.50;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2735,315,0 chrXIV 283319 . C T 1801 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.0196;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.19;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1834,201,0 chrXIV 283381 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1748,192,0 chrXIV 283514 . A G 880 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.92;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:913,105,0 chrXIV 283562 . A G 723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=4.301;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.436;QD=20.66;ReadPosRankSum=1.634;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:87:756,87,0 chrXIV 283728 . C G 1363 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.97;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1396,162,0 chrXIV 283828 . T C 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.485;QD=23.59;ReadPosRankSum=1.626;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2368,273,0 chrXIV 283982 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3353,363,0 chrXIV 284035 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0992;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.83;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3206,366,0 chrXIV 284733 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.86;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3775,435,0 chrXIV 284847 . C T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.38;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4349,480,0 chrXIV 285069 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3738,426,0 chrXIV 285483 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2580,297,0 chrXIV 285916 . A G 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.917;QD=21.42;ReadPosRankSum=1.610;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1875,216,0 chrXIV 285930 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.78;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1716,198,0 chrXIV 286688 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.71;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3360,372,0 chrXIV 286831 . A T 2470 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.52;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2503,285,0 chrXIV 286862 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.57;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2561,291,0 chrXIV 287016 . C G 3093 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.26;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3126,354,0 chrXIV 287246 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.66;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3693,423,0 chrXIV 287304 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=169;Dels=0.00;FS=2.577;HaplotypeScore=8.6917;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.482;QD=23.04;ReadPosRankSum=2.947;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3893,438,0 chrXIV 287408 . C A 3077 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.30;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3110,345,0 chrXIV 287435 . G A 3157 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.25;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3190,366,0 chrXIV 287444 . C A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1296;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.50;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3548,396,0 chrXIV 287504 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.13;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2769,321,0 chrXIV 287606 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.456;QD=24.36;ReadPosRankSum=1.707;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3386,381,0 chrXIV 287672 . T G 3642.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.61;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3642,414,0 chrXIV 288021 . A T 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=223;Dels=0.00;FS=5.482;HaplotypeScore=17.2451;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.482;QD=22.09;ReadPosRankSum=2.869;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:4927,540,0 chrXIV 288102 . A G 4903.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4903,558,0 chrXIV 288198 . A T 5999.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.19;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5999,663,0 chrXIV 288573 . A G 8188.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=28.8788;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.26;SB=-3.839e+03 GT:AD:DP:GQ:PL 1/1:0,351:352:99:8188,933,0 chrXIV 288680 . G T 6312.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=14.1827;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.92;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:6312,699,0 chrXIV 288926 . G C 3454.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=18.0548;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.08;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3454,405,0 chrXIV 289222 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1741,198,0 chrXIV 289345 . A G 2024 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.26;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2057,237,0 chrXIV 289409 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.19;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2343,267,0 chrXIV 289457 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=4.904;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.638;QD=23.58;ReadPosRankSum=1.706;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3169,366,0 chrXIV 289633 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.30;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3387,384,0 chrXIV 289819 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=22.51;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3466,402,0 chrXIV 289920 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.536;HaplotypeScore=18.3868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.417;QD=20.14;ReadPosRankSum=1.688;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3255,378,0 chrXIV 290057 . G A 936 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=5.54;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:969,105,0 chrXIV 290102 . T C 2453 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.03;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2486,285,0 chrXIV 290121 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.447;QD=20.07;ReadPosRankSum=1.601;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,157:163:99:3272,381,0 chrXIV 290461 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.6008;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.20;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2771,303,0 chrXIV 291122 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.4280;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.40;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2856,315,0 chrXIV 291360 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.31;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2923,321,0 chrXIV 291511 . G T 2599 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2632,285,0 chrXIV 291552 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3456,378,0 chrXIV 291654 . T A 1587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.720;QD=17.83;ReadPosRankSum=1.615;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1620,189,0 chrXIV 291665 . C A 1589 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.48;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1622,180,0 chrXIV 291803 . C A 2170 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.67;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2203,243,0 chrXIV 292005 . A C 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=4.372;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.800;QD=22.23;ReadPosRankSum=1.599;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:99:1211,138,0 chrXIV 292036 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.76;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1581,183,0 chrXIV 292265 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5224;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.42;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3261,378,0 chrXIV 292355 . G C 3477.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.1164;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.76;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3477,402,0 chrXIV 292505 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.77;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4683,525,0 chrXIV 292695 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.05;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3260,360,0 chrXIV 292862 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.51;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1969,222,0 chrXIV 292881 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.51;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1653,189,0 chrXIV 292884 . T G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=3.561;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.608;QD=19.43;ReadPosRankSum=1.650;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1665,189,0 chrXIV 293042 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.10;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1599,174,0 chrXIV 293224 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.549;QD=24.06;ReadPosRankSum=1.689;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3873,444,0 chrXIV 293332 . C T 3479.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.30;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3479,390,0 chrXIV 293347 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.70;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4058,462,0 chrXIV 294319 . A G 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=6.321;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.375;QD=22.47;ReadPosRankSum=2.424;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4315,483,0 chrXIV 294505 . A T 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=183;Dels=0.00;FS=6.092;HaplotypeScore=13.5861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.960;QD=23.40;ReadPosRankSum=2.047;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4282,474,0 chrXIV 294681 . A G 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=2.679;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.264;QD=23.68;ReadPosRankSum=2.421;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4073,456,0 chrXIV 294859 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.87;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3636,396,0 chrXIV 294928 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.87;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3453,387,0 chrXIV 294973 . T C 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=232;Dels=0.00;FS=5.736;HaplotypeScore=11.8653;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.762;QD=19.89;ReadPosRankSum=2.927;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:4614,534,0 chrXIV 295050 . T C 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=216;Dels=0.00;FS=8.378;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-2.099;QD=21.39;ReadPosRankSum=3.362;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:4,210:216:99:4620,525,0 chrXIV 295066 . G A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.20;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3821,438,0 chrXIV 295803 . A C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.424;QD=23.10;ReadPosRankSum=1.659;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3326,375,0 chrXIV 295990 . C T 6691.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=15.8587;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.24;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,273:276:99:6691,735,0 chrXIV 296137 . T C 5698.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.72;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:5698,660,0 chrXIV 296142 . T C 5734.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.84;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:0,286:289:99:5734,660,0 chrXIV 296290 . G A 5358.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=27.2205;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.51;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5358,579,0 chrXIV 296416 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.621;DP=182;Dels=0.00;FS=12.289;HaplotypeScore=16.3586;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.104;QD=20.12;ReadPosRankSum=3.726;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:5,176:182:99:3661,414,0 chrXIV 296479 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=153;Dels=0.00;FS=5.901;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.953;QD=21.57;ReadPosRankSum=2.860;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:3,148:153:99:3300,381,0 chrXIV 296658 . C G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.11;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3264,381,0 chrXIV 296824 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.9890;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.77;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3635,429,0 chrXIV 296860 . A T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.3058;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.05;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3873,435,0 chrXIV 296926 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.65;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3875,426,0 chrXIV 296932 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.926;QD=21.31;ReadPosRankSum=1.672;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3708,420,0 chrXIV 297187 . G A 4438.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.4855;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.53;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4438,507,0 chrXIV 297253 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.33;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4292,489,0 chrXIV 297310 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=148;Dels=0.00;FS=8.826;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.018;QD=21.67;ReadPosRankSum=3.340;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3240,366,0 chrXIV 297334 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.95;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2966,345,0 chrXIV 297366 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.44;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2968,339,0 chrXIV 297636 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.04;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2719,300,0 chrXIV 297638 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.60;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2660,294,0 chrXIV 297710 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.57;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3247,360,0 chrXIV 297762 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=110.2263;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.89;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2659,303,0 chrXIV 298031 . C A 4938.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.4421;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.04;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4938,552,0 chrXIV 298057 . G A 4440.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.20;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4440,489,0 chrXIV 298110 . C A 2800 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.87;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2833,318,0 chrXIV 298424 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2570,300,0 chrXIV 299396 . T C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=5.171;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.012;QD=22.21;ReadPosRankSum=1.704;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2809,324,0 chrXIV 299444 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.26;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2150,237,0 chrXIV 299515 . A G 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.400;QD=21.97;ReadPosRankSum=1.685;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1637,189,0 chrXIV 299584 . G T 1422 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.03;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1455,168,0 chrXIV 299925 . G C 4539.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.25;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4539,513,0 chrXIV 300017 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=177;Dels=0.00;FS=12.905;HaplotypeScore=12.2288;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.676;QD=21.05;ReadPosRankSum=3.331;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3726,420,0 chrXIV 300185 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.02;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3006,342,0 chrXIV 300215 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.42;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2835,324,0 chrXIV 300251 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.59;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3019,330,0 chrXIV 300422 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.43;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2329,258,0 chrXIV 300432 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.15;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2279,258,0 chrXIV 300452 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.09;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1955,225,0 chrXIV 300738 . G C 1043 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.86;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1076,126,0 chrXIV 300754 . G T 801 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.20;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:834,93,0 chrXIV 301119 . A T 923 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:956,108,0 chrXIV 301290 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.12;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1847,213,0 chrXIV 301506 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=125;Dels=0.00;FS=3.979;HaplotypeScore=8.6186;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.510;QD=21.31;ReadPosRankSum=1.677;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2697,315,0 chrXIV 301548 . T A 2510 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.68;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2543,294,0 chrXIV 301618 . A T 1740 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.96;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1773,195,0 chrXIV 301781 . C G 2116 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=18.40;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2149,246,0 chrXIV 301794 . C T 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.702;DP=114;Dels=0.03;FS=4.890;HaplotypeScore=94.8295;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-1.670;QD=16.19;ReadPosRankSum=1.482;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1879,207,0 chrXIV 301887 . C G 3436.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.61;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3436,405,0 chrXIV 301978 . A T 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;DP=152;Dels=0.00;FS=15.307;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=1.235;QD=18.07;ReadPosRankSum=3.231;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:6,146:152:99:2779,312,0 chrXIV 301979 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;DP=152;Dels=0.00;FS=15.352;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.395;QD=17.51;ReadPosRankSum=3.034;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:6,145:152:99:2694,315,0 chrXIV 302118 . A T 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=218;Dels=0.00;FS=3.653;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.667;QD=22.07;ReadPosRankSum=1.605;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4812,549,0 chrXIV 302222 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=186.2265;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.83;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:3907,435,0 chrXIV 302243 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.28;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4218,462,0 chrXIV 302316 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.81;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3124,348,0 chrXIV 302346 . A G 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.130;DP=141;Dels=0.00;FS=4.665;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.264;QD=19.32;ReadPosRankSum=4.068;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:6,133:141:99:2757,318,0 chrXIV 302384 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=153;Dels=0.01;FS=4.977;HaplotypeScore=15.3811;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.287;QD=19.03;ReadPosRankSum=1.709;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2944,327,0 chrXIV 302577 . T A 2405 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.90;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2438,270,0 chrXIV 302635 . C T 2211 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.47;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2244,258,0 chrXIV 302640 . T A 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=7.5542;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.912;QD=20.29;ReadPosRankSum=1.702;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2366,261,0 chrXIV 302943 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=203;Dels=0.00;FS=5.707;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.084;QD=22.00;ReadPosRankSum=2.965;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:4466,519,0 chrXIV 303090 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.6181;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.714;QD=22.82;ReadPosRankSum=1.047;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4085,474,0 chrXIV 303243 . T C 2639 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.15;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2672,309,0 chrXIV 303460 . G T 1281 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.57;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1314,144,0 chrXIV 303465 . T G 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.732;QD=17.31;ReadPosRankSum=1.683;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1245,144,0 chrXIV 303507 . G C 1455 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=17.96;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1488,174,0 chrXIV 303633 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.40;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3346,369,0 chrXIV 303657 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.24;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3556,393,0 chrXIV 303695 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.09;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2906,330,0 chrXIV 303908 . C A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.50;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3935,450,0 chrXIV 303956 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.2922;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.06;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3728,426,0 chrXIV 304058 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.86;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3224,351,0 chrXIV 304064 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.26;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2942,339,0 chrXIV 304073 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.85;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3129,360,0 chrXIV 304122 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.31;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2871,315,0 chrXIV 304313 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.30;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2798,315,0 chrXIV 304355 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.44;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2467,285,0 chrXIV 304361 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.23;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2379,276,0 chrXIV 304445 . C G 2812 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.47;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2845,336,0 chrXIV 304693 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=86.5732;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=20.31;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1942,213,0 chrXIV 304724 . A C 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.512;QD=19.03;ReadPosRankSum=1.653;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1727,201,0 chrXIV 304761 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.95;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1379,162,0 chrXIV 305009 . A T 2372 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2405,267,0 chrXIV 305066 . A G 2648 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.88;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2681,315,0 chrXIV 305136 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.36;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3270,372,0 chrXIV 305299 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=195;Dels=0.00;FS=8.939;HaplotypeScore=17.8519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.838;QD=22.14;ReadPosRankSum=2.412;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4318,509,0 chrXIV 305592 . T C 5454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=273;Dels=0.00;FS=3.463;HaplotypeScore=10.4107;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.186;QD=19.98;ReadPosRankSum=1.631;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:1,272:273:99:5454,624,0 chrXIV 305637 . G T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.4694;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.12;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3575,399,0 chrXIV 305670 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.5018;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.053;QD=15.34;ReadPosRankSum=2.359;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,160:165:99:2564,297,0 chrXIV 305712 . A C 2563 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=15.92;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2596,303,0 chrXIV 305724 . A G 3020 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=16.50;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3053,345,0 chrXIV 305808 . T C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.107;DP=166;Dels=0.00;FS=8.132;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.097;QD=18.86;ReadPosRankSum=2.420;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3164,378,0 chrXIV 305863 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.8429;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.19;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4128,480,0 chrXIV 305919 . G C 5241.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.66;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5241,600,0 chrXIV 305936 . T C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=184;Dels=0.00;FS=5.707;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=-0.030;QD=16.46;ReadPosRankSum=2.958;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:3,178:184:99:3061,360,0 chrXIV 306024 . T C 6043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;MQRankSum=1.156;QD=23.24;ReadPosRankSum=2.421;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:6043,707,0 chrXIV 306102 . T A 6284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=289;Dels=0.00;FS=8.257;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-0.531;QD=21.74;ReadPosRankSum=2.424;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:2,287:289:99:6284,714,0 chrXIV 306244 . T G 4658.01 SnpCluster AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.7978;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=19.17;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,239:243:99:4658,540,0 chrXIV 306250 . A G 4364.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=225;Dels=0.00;FS=2.482;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;MQRankSum=-2.835;QD=19.40;ReadPosRankSum=2.969;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:4364,510,0 chrXIV 306252 . C T 4372.01 SnpCluster AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=149.4087;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=19.78;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4372,498,0 chrXIV 306286 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.9726;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=15.40;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:3542,390,0 chrXIV 306300 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=15.07;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:3767,435,0 chrXIV 306326 . C T 5237.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=14.3850;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=16.52;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:5237,594,0 chrXIV 306600 . C T 10449.01 filter AC=2;AF=1.00;AN=2;DP=499;Dels=0.00;FS=0.000;HaplotypeScore=18.8942;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.94;SB=-5.145e+03 GT:AD:DP:GQ:PL 1/1:0,499:499:99:10449,1167,0 chrXIV 307073 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=181;Dels=0.00;FS=7.804;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.224;QD=23.22;ReadPosRankSum=2.341;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4202,486,0 chrXIV 307285 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=14.23;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2239,258,0 chrXIV 307339 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.8219;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.96;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3306,381,0 chrXIV 307566 . C T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.6388;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.68;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4311,477,0 chrXIV 307785 . A G 4750.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.2323;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.84;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4750,552,0 chrXIV 307827 . A G 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=205;Dels=0.00;FS=3.005;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.113;QD=22.79;ReadPosRankSum=2.401;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4671,537,0 chrXIV 307920 . G A 4652.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.38;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4652,531,0 chrXIV 308304 . G A 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.3743;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.096;QD=18.09;ReadPosRankSum=2.919;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2511,288,0 chrXIV 308305 . A G 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=135;Dels=0.00;FS=3.023;HaplotypeScore=6.3085;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.120;QD=18.47;ReadPosRankSum=2.413;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2526,288,0 chrXIV 308412 . A G 2872 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.12;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2905,342,0 chrXIV 308517 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.240;QD=22.44;ReadPosRankSum=1.705;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2972,333,0 chrXIV 308680 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.14;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3910,435,0 chrXIV 308856 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.4110;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.49;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3733,411,0 chrXIV 308990 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=10.5613;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;QD=24.24;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3903,429,0 chrXIV 309212 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=139;Dels=0.00;FS=3.305;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.707;QD=21.27;ReadPosRankSum=1.707;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2990,342,0 chrXIV 309245 . T C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.5589;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.248;QD=22.23;ReadPosRankSum=1.707;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3079,354,0 chrXIV 309362 . T C 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=153;Dels=0.00;FS=2.839;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.618;QD=18.46;ReadPosRankSum=2.417;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2857,333,0 chrXIV 309497 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6840;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.563;QD=16.46;ReadPosRankSum=1.690;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:2732,324,0 chrXIV 309506 . A C 2810 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1633;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.35;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2843,333,0 chrXIV 309659 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.5423;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.22;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3714,411,0 chrXIV 309849 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.05;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4365,480,0 chrXIV 309950 . C T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.5234;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.85;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3566,393,0 chrXIV 310003 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.30;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2759,315,0 chrXIV 310045 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.113;QD=18.70;ReadPosRankSum=2.346;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2688,312,0 chrXIV 310161 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.72;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2396,273,0 chrXIV 310181 . A G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.478;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.414;QD=19.77;ReadPosRankSum=1.697;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1990,228,0 chrXIV 310209 . C G 1639 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.42;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1672,186,0 chrXIV 310493 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=154;Dels=0.00;FS=2.948;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-2.175;QD=22.68;ReadPosRankSum=2.369;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3493,393,0 chrXIV 310608 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9455;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.06;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3811,420,0 chrXIV 310616 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.63;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3982,462,0 chrXIV 310677 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=21.73;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3803,414,0 chrXIV 310678 . G A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.28;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3787,414,0 chrXIV 310729 . A G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=149;Dels=0.00;FS=6.061;HaplotypeScore=8.1860;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.534;QD=19.65;ReadPosRankSum=2.912;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:2961,339,0 chrXIV 310900 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=21.31;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3665,402,0 chrXIV 310903 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=22.02;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3634,399,0 chrXIV 311115 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.09;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3047,342,0 chrXIV 311118 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=161;Dels=0.00;FS=9.361;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.194;QD=18.11;ReadPosRankSum=2.906;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:2948,336,0 chrXIV 311376 . C T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8742;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=22.98;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4022,444,0 chrXIV 311601 . G C 3935.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.49;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3935,459,0 chrXIV 311614 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.1750;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.80;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3743,426,0 chrXIV 312360 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.48;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4168,459,0 chrXIV 312912 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.86;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3955,438,0 chrXIV 313160 . G A 2147 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.12;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2180,246,0 chrXIV 313182 . C T 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=105;Dels=0.00;FS=3.052;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.544;QD=22.25;ReadPosRankSum=-0.742;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2369,270,0 chrXIV 313482 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.15;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2794,321,0 chrXIV 313500 . T C 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.527;QD=20.12;ReadPosRankSum=1.682;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2829,327,0 chrXIV 313792 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.66;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3667,405,0 chrXIV 313908 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=4.802;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.171;QD=23.61;ReadPosRankSum=1.708;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3353,378,0 chrXIV 313965 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3780,420,0 chrXIV 314001 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.32;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4245,480,0 chrXIV 314409 . A G 3103 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.8148;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3136,363,0 chrXIV 314511 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.561;QD=21.60;ReadPosRankSum=1.632;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3079,363,0 chrXIV 314709 . C G 2975 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3008,351,0 chrXIV 314885 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.01;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4081,462,0 chrXIV 314976 . G A 4707.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.96;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4707,528,0 chrXIV 315076 . C T 4573.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.78;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4573,504,0 chrXIV 315396 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=169;Dels=0.00;FS=2.490;HaplotypeScore=12.1056;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.424;QD=20.43;ReadPosRankSum=2.946;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3452,402,0 chrXIV 315475 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.21;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2721,303,0 chrXIV 315645 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=3.261;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.263;QD=23.38;ReadPosRankSum=1.677;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2979,336,0 chrXIV 315807 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=3.769;HaplotypeScore=5.8615;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.362;QD=21.34;ReadPosRankSum=1.706;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2829,330,0 chrXIV 316244 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.09;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3133,342,0 chrXIV 316253 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=4.568;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.427;QD=20.12;ReadPosRankSum=1.708;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2971,351,0 chrXIV 316562 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.7979;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.04;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4217,480,0 chrXIV 316589 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.88;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4302,468,0 chrXIV 316782 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.15;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3430,381,0 chrXIV 316842 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.00;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2865,312,0 chrXIV 316985 . G A 3157 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.77;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3190,369,0 chrXIV 317015 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.10;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3381,393,0 chrXIV 317303 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=25.2283;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.957;QD=21.06;ReadPosRankSum=1.635;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3087,354,0 chrXIV 317754 . C T 5049.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.1156;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.38;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5049,561,0 chrXIV 317914 . A G 6478.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=11.8548;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.73;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:6478,750,0 chrXIV 318033 . T C 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=246;Dels=0.00;FS=7.551;HaplotypeScore=13.5263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.115;QD=21.07;ReadPosRankSum=2.379;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:2,243:246:99:5184,606,0 chrXIV 318127 . C T 6083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=25.2388;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.950;QD=21.57;ReadPosRankSum=1.372;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:1,278:282:99:6083,678,0 chrXIV 318393 . A T 4797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=3.884;HaplotypeScore=15.6327;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.503;QD=23.51;ReadPosRankSum=1.681;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4797,534,0 chrXIV 318591 . G T 5039.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.3215;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.44;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5039,564,0 chrXIV 318776 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6854;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.20;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4142,471,0 chrXIV 318794 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.588;DP=181;Dels=0.00;FS=11.902;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.377;QD=19.50;ReadPosRankSum=3.804;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:5,176:181:99:3530,399,0 chrXIV 319024 . A T 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.184;QD=24.95;ReadPosRankSum=1.707;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3493,384,0 chrXIV 319149 . A G 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.202;QD=22.27;ReadPosRankSum=2.891;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2705,309,0 chrXIV 319911 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=25.4310;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=20.50;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3423,378,0 chrXIV 321214 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=8.962;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.432;QD=23.64;ReadPosRankSum=2.399;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3428,390,0 chrXIV 321608 . C A 2438 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2471,270,0 chrXIV 321821 . G T 2969 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.83;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3002,327,0 chrXIV 321987 . T G 1713 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.89;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1746,201,0 chrXIV 322059 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.53;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1174,132,0 chrXIV 322063 . A G 1009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.746;QD=19.40;ReadPosRankSum=2.433;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:3,49:52:99:1042,117,0 chrXIV 322144 . C T 623 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.10;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:656,72,0 chrXIV 322462 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=3.716;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.516;QD=22.05;ReadPosRankSum=1.710;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3550,417,0 chrXIV 322552 . T C 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=107;Dels=0.00;FS=10.228;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.313;QD=20.66;ReadPosRankSum=2.380;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2244,258,0 chrXIV 322790 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=112;Dels=0.00;FS=2.599;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.207;QD=21.59;ReadPosRankSum=2.901;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2451,285,0 chrXIV 322936 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.13;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4025,447,0 chrXIV 322952 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=180;Dels=0.00;FS=2.718;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.707;QD=20.78;ReadPosRankSum=2.422;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3740,441,0 chrXIV 323011 . T G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.8466;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.700;QD=19.14;ReadPosRankSum=1.662;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:3827,450,0 chrXIV 323069 . A G 4458.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.7748;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.45;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4458,510,0 chrXIV 323136 . A G 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=223;Dels=0.00;FS=3.149;HaplotypeScore=11.1517;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.085;QD=21.22;ReadPosRankSum=1.685;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4732,552,0 chrXIV 323238 . A C 4776.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.61;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4776,555,0 chrXIV 323415 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.98;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3977,435,0 chrXIV 323530 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.708;QD=19.93;ReadPosRankSum=1.708;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2903,327,0 chrXIV 323606 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3054,357,0 chrXIV 323787 . A G 3682.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.59;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3682,417,0 chrXIV 323874 . C G 4424.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.3728;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.87;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4424,516,0 chrXIV 324029 . G A 5625.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.34;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5625,624,0 chrXIV 324247 . G C 3180 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.8952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3213,375,0 chrXIV 324447 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2507,276,0 chrXIV 324866 . T C 5772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.5257;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.045;QD=23.75;ReadPosRankSum=1.718;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5772,654,0 chrXIV 325094 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3852,426,0 chrXIV 325421 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.0469;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.447;QD=21.85;ReadPosRankSum=1.716;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4698,540,0 chrXIV 325454 . C A 4494.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.61;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4494,501,0 chrXIV 325458 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.31;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4306,474,0 chrXIV 326099 . T C 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.4674;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.219;QD=22.16;ReadPosRankSum=1.718;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5474,636,0 chrXIV 326398 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=176;Dels=0.00;FS=5.697;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.971;QD=21.91;ReadPosRankSum=2.960;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:3857,450,0 chrXIV 326545 . C A 1408 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.03;FS=0.000;HaplotypeScore=16.2528;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.53;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1441,159,0 chrXIV 326625 . C G 1422 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.71;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1455,168,0 chrXIV 326722 . A G 1256 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.66;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1289,156,0 chrXIV 327428 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.32;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3795,414,0 chrXIV 327455 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.90;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3389,387,0 chrXIV 327569 . T G 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.671;QD=22.53;ReadPosRankSum=1.712;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3921,438,0 chrXIV 328022 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.51;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3940,447,0 chrXIV 328483 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3224,357,0 chrXIV 329033 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.5090;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.94;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3727,432,0 chrXIV 329212 . T G 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.321;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.030;QD=22.16;ReadPosRankSum=1.702;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2626,306,0 chrXIV 329618 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3985,450,0 chrXIV 330284 . A T 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=10.375;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.291;QD=18.88;ReadPosRankSum=2.409;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2317,258,0 chrXIV 330285 . T G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=122;Dels=0.00;FS=2.562;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.926;QD=18.08;ReadPosRankSum=2.909;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2239,258,0 chrXIV 330365 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.142;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.944;QD=23.41;ReadPosRankSum=1.711;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3910,435,0 chrXIV 330395 . G A 4383.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.8642;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.83;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4383,486,0 chrXIV 330466 . A T 5171.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.50;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5171,570,0 chrXIV 330503 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.343;QD=22.62;ReadPosRankSum=1.677;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4252,483,0 chrXIV 330559 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.688;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.960;QD=22.22;ReadPosRankSum=1.649;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3689,429,0 chrXIV 331023 . T G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;DP=135;Dels=0.00;FS=2.427;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.713;QD=19.98;ReadPosRankSum=3.341;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:4,130:135:99:2730,321,0 chrXIV 331067 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.20;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3874,453,0 chrXIV 331278 . G T 4545.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.14;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4545,522,0 chrXIV 331401 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.60;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3503,396,0 chrXIV 331514 . G A 4509.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.55;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4509,498,0 chrXIV 331521 . G A 3820.01 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=20.54;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:3820,420,0 chrXIV 331522 . C T 3708.01 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.04;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3708,417,0 chrXIV 331587 . T A 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=4.128;HaplotypeScore=6.8696;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.351;QD=21.53;ReadPosRankSum=1.711;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3509,390,0 chrXIV 331752 . T A 2775 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.38;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2808,312,0 chrXIV 332278 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.49;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2102,234,0 chrXIV 332293 . T C 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.465;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.591;QD=20.04;ReadPosRankSum=1.098;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1716,172,0 chrXIV 332613 . C G 5700.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=17.7483;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.01;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,254:259:99:5700,645,0 chrXIV 332838 . G A 4663.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.20;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4663,510,0 chrXIV 333748 . A G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=16.2886;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.707;QD=21.78;ReadPosRankSum=0.718;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3104,357,0 chrXIV 333784 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4002,447,0 chrXIV 333895 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.50;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2248,252,0 chrXIV 333907 . G A 2048 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.79;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2081,237,0 chrXIV 334339 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.1790;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.89;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3617,399,0 chrXIV 335000 . T A 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.712;QD=23.72;ReadPosRankSum=1.712;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4174,465,0 chrXIV 335033 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=157;Dels=0.00;FS=6.565;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.055;QD=22.85;ReadPosRankSum=2.324;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3588,417,0 chrXIV 335091 . A G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=140;Dels=0.00;FS=5.270;HaplotypeScore=1.9705;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.787;QD=16.99;ReadPosRankSum=3.370;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:2411,285,0 chrXIV 335092 . T A 2540 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.81;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2573,282,0 chrXIV 335123 . A G 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=0.164;QD=17.20;ReadPosRankSum=1.682;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,136:140:99:2441,279,0 chrXIV 335153 . A T 2512 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=17.94;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2545,303,0 chrXIV 335194 . G T 2891 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=20.50;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2924,330,0 chrXIV 335195 . A T 2665 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=19.04;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2698,321,0 chrXIV 335197 . G A 2767 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=20.05;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2800,324,0 chrXIV 335341 . A T 2788 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=22.30;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2821,315,0 chrXIV 335376 . A G 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.979;HaplotypeScore=4.2512;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;MQRankSum=1.085;QD=16.25;ReadPosRankSum=1.667;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1772,207,0 chrXIV 335395 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=15.30;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1792,204,0 chrXIV 335616 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=22.92;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3552,393,0 chrXIV 335764 . A C 2482 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.68;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2515,288,0 chrXIV 336109 . G C 3184 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.27;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3217,375,0 chrXIV 336158 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=5.315;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.637;QD=22.06;ReadPosRankSum=1.681;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3055,357,0 chrXIV 336315 . C G 2317 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2350,273,0 chrXIV 336465 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.465;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.619;QD=23.47;ReadPosRankSum=1.704;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2920,342,0 chrXIV 336508 . A T 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=4.065;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.419;QD=22.82;ReadPosRankSum=1.664;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3491,393,0 chrXIV 336617 . C T 4685.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.10;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4685,516,0 chrXIV 336630 . G A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.6742;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.62;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4516,498,0 chrXIV 336749 . G A 4851.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.66;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4851,552,0 chrXIV 336818 . C G 4952.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.81;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:4952,570,0 chrXIV 336941 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.81;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3864,447,0 chrXIV 336952 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=3.653;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.493;QD=17.71;ReadPosRankSum=1.716;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:3860,441,0 chrXIV 336970 . A C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.500;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.870;QD=17.14;ReadPosRankSum=1.679;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:3410,390,0 chrXIV 337051 . C T 5773.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=15.9038;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.03;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5773,657,0 chrXIV 337537 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9499;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.80;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4099,447,0 chrXIV 337732 . C G 2388 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.5490;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.41;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2421,276,0 chrXIV 337795 . A G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=-1.588;QD=22.48;ReadPosRankSum=1.696;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2214,252,0 chrXIV 337877 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2043,225,0 chrXIV 338041 . G A 2052 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=22.30;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2085,237,0 chrXIV 338161 . T C 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=3.165;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;MQRankSum=-0.933;QD=21.06;ReadPosRankSum=1.587;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3045,354,0 chrXIV 338282 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.47;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3989,450,0 chrXIV 338359 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.73;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2814,321,0 chrXIV 338424 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.11;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3881,432,0 chrXIV 338476 . C A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.15;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4806,549,0 chrXIV 338522 . G T 4164.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.3684;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.03;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4164,477,0 chrXIV 338586 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.75;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3104,345,0 chrXIV 338610 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.91;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3374,390,0 chrXIV 338828 . C A 2164 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.01;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2197,246,0 chrXIV 338838 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.25;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2095,243,0 chrXIV 339555 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4108,450,0 chrXIV 339926 . T C 5131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=232;Dels=0.00;FS=3.029;HaplotypeScore=19.7855;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.038;QD=22.12;ReadPosRankSum=1.641;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:1,228:232:99:5131,585,0 chrXIV 340266 . A T 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=181;Dels=0.00;FS=2.855;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.237;QD=20.38;ReadPosRankSum=2.422;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3689,423,0 chrXIV 340286 . A T 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=3.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=1.091;QD=18.89;ReadPosRankSum=2.358;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3074,351,0 chrXIV 340288 . A C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.008;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.914;QD=18.18;ReadPosRankSum=1.390;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:2960,313,0 chrXIV 340357 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.8587;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.30;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3262,363,0 chrXIV 340618 . A G 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=192;Dels=0.00;FS=3.672;HaplotypeScore=18.2894;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.662;QD=22.07;ReadPosRankSum=1.678;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4238,486,0 chrXIV 340804 . G T 2734 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.39;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2767,312,0 chrXIV 340840 . T C 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=6.454;HaplotypeScore=5.0958;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.974;QD=18.31;ReadPosRankSum=1.707;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2541,300,0 chrXIV 340939 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.32;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1632,183,0 chrXIV 340976 . T C 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=5.039;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.284;QD=19.96;ReadPosRankSum=1.681;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1390,159,0 chrXIV 341067 . C A 1363 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1396,153,0 chrXIV 341482 . G A 4659.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.27;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4659,513,0 chrXIV 341642 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.43;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4128,468,0 chrXIV 341705 . A T 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.331;QD=20.55;ReadPosRankSum=1.669;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3370,384,0 chrXIV 341764 . G C 3182 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.66;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3215,372,0 chrXIV 342273 . C G 3609.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.48;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3609,414,0 chrXIV 342387 . A T 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.382;QD=24.26;ReadPosRankSum=1.703;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2920,315,0 chrXIV 342435 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=5.397;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.035;QD=21.95;ReadPosRankSum=1.686;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3292,381,0 chrXIV 342494 . C A 2201 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.19;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2234,246,0 chrXIV 342499 . T A 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=118;Dels=0.00;FS=2.986;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.198;QD=17.05;ReadPosRankSum=2.387;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2045,234,0 chrXIV 342707 . A G 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.405;QD=23.70;ReadPosRankSum=1.705;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3066,348,0 chrXIV 342782 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.41;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3406,390,0 chrXIV 342811 . C A 2876 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.79;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2909,321,0 chrXIV 342839 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.559;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.350;QD=22.63;ReadPosRankSum=1.644;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2703,321,0 chrXIV 342917 . G T 2977 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.90;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3010,342,0 chrXIV 343176 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.13;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3632,399,0 chrXIV 343246 . A T 1892 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1925,213,0 chrXIV 343600 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.38;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1958,234,0 chrXIV 343922 . G T 5503.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.92;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,259:263:99:5503,609,0 chrXIV 344176 . A T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.21;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3731,405,0 chrXIV 344260 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=19.7909;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.95;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3582,408,0 chrXIV 344329 . T C 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.574;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.614;QD=24.48;ReadPosRankSum=1.714;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4626,525,0 chrXIV 344398 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3993,441,0 chrXIV 344873 . T G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=148;Dels=0.00;FS=2.863;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.108;QD=23.07;ReadPosRankSum=2.416;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3415,396,0 chrXIV 345058 . C T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.56;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5455,597,0 chrXIV 345061 . G A 5411.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.65;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5411,600,0 chrXIV 345099 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=246;Dels=0.00;FS=3.997;HaplotypeScore=7.9726;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.183;QD=18.22;ReadPosRankSum=1.718;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:4481,519,0 chrXIV 345121 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.32;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:3707,429,0 chrXIV 345211 . C A 6335.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=12.8921;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.79;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6335,717,0 chrXIV 345668 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.13;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2577,294,0 chrXIV 345712 . A G 2960 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.26;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2993,342,0 chrXIV 345744 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.34;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3026,345,0 chrXIV 345824 . T C 4887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=217;Dels=0.00;FS=5.452;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.403;QD=22.52;ReadPosRankSum=2.921;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:4887,555,0 chrXIV 345915 . G A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.34;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5089,552,0 chrXIV 346068 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.11;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4348,477,0 chrXIV 346103 . T G 4148.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.04;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4148,477,0 chrXIV 346115 . A T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.95;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4150,471,0 chrXIV 346250 . A T 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.01;FS=3.757;HaplotypeScore=28.2656;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.565;QD=20.78;ReadPosRankSum=1.714;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3990,444,0 chrXIV 346414 . A C 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=2.781;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.338;QD=22.80;ReadPosRankSum=2.416;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3352,384,0 chrXIV 346690 . T A 4717.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2038;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.82;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4717,525,0 chrXIV 346875 . C T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.5310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4571,516,0 chrXIV 347047 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=162;Dels=0.01;FS=4.532;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.490;QD=19.73;ReadPosRankSum=1.710;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3230,375,0 chrXIV 347194 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=161;Dels=0.00;FS=2.585;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.244;QD=23.22;ReadPosRankSum=2.956;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3739,432,0 chrXIV 347234 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.50;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3337,366,0 chrXIV 347308 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2401;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.57;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3602,411,0 chrXIV 347517 . A G 1894 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.70;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1927,222,0 chrXIV 347518 . A G 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.112;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.207;QD=18.20;ReadPosRankSum=3.375;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:4,103:107:99:1980,219,0 chrXIV 347615 . T C 459 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.36;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:57:492,57,0 chrXIV 347622 . T A 392 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=14.52;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:425,48,0 chrXIV 347708 . G C 1444 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.88;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1477,171,0 chrXIV 347728 . A G 1441 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.01;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1474,165,0 chrXIV 347745 . T C 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.652;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-0.191;QD=14.10;ReadPosRankSum=3.697;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:5,66:71:99:1048,120,0 chrXIV 347748 . A T 1108 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=15.39;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1141,126,0 chrXIV 348083 . A G 4390.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.84;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4390,504,0 chrXIV 348360 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=173;Dels=0.00;FS=8.983;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.753;QD=21.51;ReadPosRankSum=3.398;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:4,167:173:99:3722,435,0 chrXIV 348462 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.0094;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=20.84;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3013,333,0 chrXIV 348465 . T C 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.197;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.6433;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-0.408;QD=19.35;ReadPosRankSum=1.121;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:2723,296,0 chrXIV 348486 . C G 1938 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=15.89;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1971,228,0 chrXIV 348501 . G T 2086 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=15.92;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2119,237,0 chrXIV 348533 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=16.02;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2164,240,0 chrXIV 348537 . A G 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=0.000;QD=14.60;ReadPosRankSum=1.682;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2048,237,0 chrXIV 348550 . T A 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.691;DP=140;Dels=0.00;FS=14.129;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-0.374;QD=15.00;ReadPosRankSum=2.936;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2133,240,0 chrXIV 348669 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=24.98;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3106,339,0 chrXIV 348755 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=19.80;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1617,180,0 chrXIV 348777 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=20.57;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1617,177,0 chrXIV 348794 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=18.55;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1591,174,0 chrXIV 348823 . T C 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=5.815;HaplotypeScore=3.2867;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=0;MQRankSum=1.497;QD=16.39;ReadPosRankSum=1.698;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1738,198,0 chrXIV 348831 . A C 1452 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;QD=14.52;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1485,177,0 chrXIV 348835 . A T 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=-0.261;QD=15.62;ReadPosRankSum=2.400;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1579,174,0 chrXIV 348847 . A G 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=-0.305;QD=14.82;ReadPosRankSum=2.397;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1411,165,0 chrXIV 348849 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=81.9769;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=15.08;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1405,162,0 chrXIV 348867 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=0;QD=14.12;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1403,156,0 chrXIV 348902 . A T 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=8.482;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;MQRankSum=-0.265;QD=18.03;ReadPosRankSum=2.365;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2125,243,0 chrXIV 348931 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=17.74;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2233,255,0 chrXIV 348937 . T C 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;MQRankSum=0.000;QD=17.61;ReadPosRankSum=-0.660;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2252,240,0 chrXIV 349014 . G A 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1763;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-1.095;QD=18.99;ReadPosRankSum=1.704;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2407,250,0 chrXIV 349029 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=120.9123;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.63;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2360,264,0 chrXIV 349064 . T G 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.8933;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.399;QD=15.94;ReadPosRankSum=2.204;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:2,198:201:99:3237,386,0 chrXIV 349111 . G A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.01;FS=0.000;HaplotypeScore=21.6850;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.98;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4081,474,0 chrXIV 349227 . A C 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.870;DP=210;Dels=0.00;FS=4.941;HaplotypeScore=19.9069;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=1.119;QD=21.17;ReadPosRankSum=1.715;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4446,498,0 chrXIV 349351 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-1.586;QD=19.58;ReadPosRankSum=1.711;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3290,378,0 chrXIV 349357 . C T 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=171;Dels=0.00;FS=3.879;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-0.273;QD=18.46;ReadPosRankSum=-0.172;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3190,345,0 chrXIV 349397 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=183;Dels=0.00;FS=3.680;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.628;QD=18.48;ReadPosRankSum=1.694;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3381,393,0 chrXIV 349523 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.166;QD=22.70;ReadPosRankSum=1.710;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3632,423,0 chrXIV 349556 . T C 3820.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.76;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3820,441,0 chrXIV 349601 . G C 3145 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.72;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3178,369,0 chrXIV 349827 . A C 69.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.373;DP=162;Dels=0.04;FS=2.397;HaplotypeScore=301.3091;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.065;QD=0.43;ReadPosRankSum=-5.671;SB=2.49 GT:AD:DP:GQ:PL 1/1:134,14:156:12:102,12,0 chrXIV 349972 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=156;Dels=0.00;FS=2.575;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.701;QD=20.44;ReadPosRankSum=2.339;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3221,375,0 chrXIV 350057 . C T 4957.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.65;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4957,546,0 chrXIV 350114 . G A 5335.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=12.4246;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.43;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5335,600,0 chrXIV 350252 . G C 3967.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.03;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:3967,453,0 chrXIV 350351 . T C 4456.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=21.1190;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.98;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,218:223:99:4456,519,0 chrXIV 350455 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.18;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3410,378,0 chrXIV 350489 . A C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.978;QD=17.91;ReadPosRankSum=1.648;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2290,264,0 chrXIV 350601 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.02;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3553,387,0 chrXIV 350676 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.67;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1902,216,0 chrXIV 350783 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8303;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.99;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3438,390,0 chrXIV 350848 . A C 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=100;Dels=0.00;FS=6.088;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.302;QD=21.03;ReadPosRankSum=2.928;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:3,94:100:99:2136,246,0 chrXIV 350980 . T C 2528 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=19.15;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2561,294,0 chrXIV 350992 . A G 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=-0.522;QD=17.30;ReadPosRankSum=1.705;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2213,258,0 chrXIV 351006 . C G 1997 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=16.24;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2030,231,0 chrXIV 351009 . A T 1879 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=15.28;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1912,210,0 chrXIV 351050 . T G 2191 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=16.85;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2224,261,0 chrXIV 351152 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.90;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2734,306,0 chrXIV 351221 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=1.131;QD=23.73;ReadPosRankSum=1.703;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2904,333,0 chrXIV 351622 . T G 3590.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.6556;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3590,414,0 chrXIV 351720 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.08;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3975,450,0 chrXIV 351850 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2843,312,0 chrXIV 351899 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3200,342,0 chrXIV 352081 . C A 2106 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2139,237,0 chrXIV 352180 . G C 2782 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.44;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2815,330,0 chrXIV 352539 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.58;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2564,285,0 chrXIV 352733 . G C 704 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=15.30;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:737,84,0 chrXIV 352808 . A C 936 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.35;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:969,114,0 chrXIV 353111 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3943,435,0 chrXIV 353490 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.366;DP=220;Dels=0.00;FS=13.585;HaplotypeScore=15.1414;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.190;QD=21.05;ReadPosRankSum=4.305;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:7,210:220:99:4631,522,0 chrXIV 353696 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.66;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2864,330,0 chrXIV 353764 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.67;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3287,360,0 chrXIV 353786 . A T 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=6.239;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=0.375;QD=19.54;ReadPosRankSum=1.708;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2827,318,0 chrXIV 353788 . A C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=143;Dels=0.00;FS=12.576;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-1.539;QD=18.41;ReadPosRankSum=2.346;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2666,306,0 chrXIV 353924 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.05;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3330,369,0 chrXIV 354061 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.71;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3203,354,0 chrXIV 354131 . G C 3199 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.01;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3232,378,0 chrXIV 354254 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.12;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3495,408,0 chrXIV 354641 . A G 4844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=212;Dels=0.00;FS=11.383;HaplotypeScore=16.5302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.099;QD=22.85;ReadPosRankSum=2.414;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4844,575,0 chrXIV 354740 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=171;Dels=0.00;FS=3.088;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.092;QD=23.75;ReadPosRankSum=1.671;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4062,459,0 chrXIV 354924 . G T 4385.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.3883;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.58;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4385,477,0 chrXIV 354985 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.83;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3272,360,0 chrXIV 354992 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2083;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.07;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3051,354,0 chrXIV 355079 . C T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.46;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3616,399,0 chrXIV 355533 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4577;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.17;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2327,255,0 chrXIV 355610 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.32;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2421,267,0 chrXIV 355851 . A G 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=180;Dels=0.00;FS=10.147;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.956;QD=23.31;ReadPosRankSum=2.422;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4195,471,0 chrXIV 355985 . C T 5127.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=24.07;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5127,564,0 chrXIV 356004 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.50;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4679,516,0 chrXIV 356010 . C T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.73;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4520,501,0 chrXIV 356061 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=182;Dels=0.00;FS=8.368;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.512;QD=18.32;ReadPosRankSum=2.422;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3335,384,0 chrXIV 356310 . C G 1842 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=15.22;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1875,213,0 chrXIV 356361 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.84;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2637,291,0 chrXIV 356370 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=23.42;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2633,285,0 chrXIV 356379 . A C 2527 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=23.18;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2560,291,0 chrXIV 356443 . A G 2744 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=20.63;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2777,324,0 chrXIV 356489 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=174;Dels=0.00;FS=2.445;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.104;QD=22.42;ReadPosRankSum=2.925;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3901,450,0 chrXIV 356515 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.84;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4042,459,0 chrXIV 356568 . T G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.627;QD=18.75;ReadPosRankSum=1.711;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3090,366,0 chrXIV 356611 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=13.95;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2376,276,0 chrXIV 356615 . A C 2355 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.02;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2388,273,0 chrXIV 356637 . G T 2466 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=14.42;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2499,279,0 chrXIV 356638 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=13.99;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:2467,285,0 chrXIV 356655 . A T 2888 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=15.87;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2921,324,0 chrXIV 356684 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=3.299;HaplotypeScore=5.4716;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;MQRankSum=-0.175;QD=18.37;ReadPosRankSum=1.716;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4023,471,0 chrXIV 356726 . T C 5659.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=22.37;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5659,660,0 chrXIV 356876 . A G 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=122;Dels=0.00;FS=2.562;HaplotypeScore=11.5790;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;MQRankSum=0.546;QD=17.05;ReadPosRankSum=2.909;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2113,246,0 chrXIV 356906 . A T 2440 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;QD=17.81;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2473,291,0 chrXIV 356935 . T A 3101 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=19.14;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3134,342,0 chrXIV 356959 . T G 2842 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=18.58;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2875,321,0 chrXIV 357088 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4213;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=21.35;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2275,267,0 chrXIV 357348 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.05;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3234,369,0 chrXIV 357361 . A T 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.933;QD=20.07;ReadPosRankSum=1.712;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3391,372,0 chrXIV 357370 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=176;Dels=0.00;FS=2.925;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.021;QD=17.32;ReadPosRankSum=2.422;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3082,348,0 chrXIV 357524 . T C 2945 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.65;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2978,348,0 chrXIV 357854 . A G 5176.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.5116;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.04;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:5176,608,0 chrXIV 357873 . C T 6170.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=8.8962;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.96;SB=-3.513e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6170,675,0 chrXIV 358013 . T C 7469.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=20.5808;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.36;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:0,334:334:99:7469,864,0 chrXIV 358067 . T C 5904.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.95;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5904,678,0 chrXIV 358109 . G A 6144.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=18.6237;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.59;SB=-3.142e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6144,667,0 chrXIV 358300 . G C 5137.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.32;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,236:241:99:5137,585,0 chrXIV 358346 . T C 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.2064;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.594;QD=19.94;ReadPosRankSum=1.717;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4526,528,0 chrXIV 358462 . G A 5702.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.27;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,242:245:99:5702,636,0 chrXIV 358507 . G C 5267.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.1116;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.59;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5267,606,0 chrXIV 358519 . C G 4827.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.17;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4827,561,0 chrXIV 358643 . A G 4987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.2180;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.183;QD=22.46;ReadPosRankSum=1.685;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4987,579,0 chrXIV 358732 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.07;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3898,435,0 chrXIV 358757 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.80;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3831,429,0 chrXIV 358847 . T C 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=7.112;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.251;QD=22.26;ReadPosRankSum=1.700;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2437,276,0 chrXIV 359017 . T A 796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=4.973;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;MQRankSum=1.417;QD=18.09;ReadPosRankSum=1.654;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:96:829,96,0 chrXIV 359037 . T C 671 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=2.906;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=-2.088;QD=16.37;ReadPosRankSum=2.330;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:81:704,81,0 chrXIV 359040 . T C 628 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=14.95;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:661,75,0 chrXIV 359047 . T G 655 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.029;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;MQRankSum=-0.026;QD=13.94;ReadPosRankSum=2.345;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:81:688,81,0 chrXIV 359068 . G C 751 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.91;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:784,90,0 chrXIV 359072 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.73;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:788,87,0 chrXIV 359079 . G A 729 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=12.15;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:84:762,84,0 chrXIV 359085 . C T 687 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=11.84;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:78:720,78,0 chrXIV 359088 . C G 617 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=11.02;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:75:650,75,0 chrXIV 359114 . C T 555 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=10.67;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:66:588,66,0 chrXIV 359115 . G T 555 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=10.67;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:66:588,66,0 chrXIV 359140 . A G 259 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=7.19;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:33:292,33,0 chrXIV 359147 . G A 264 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=7.54;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:33:297,33,0 chrXIV 359155 . A T 239 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=8.54;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:30:272,30,0 chrXIV 359159 . C G 258 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=9.92;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:291,33,0 chrXIV 359163 . A T 257 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=9.88;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:290,33,0 chrXIV 359204 . T C 459 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=16.39;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:492,57,0 chrXIV 359454 . A T 935 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.97;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:968,108,0 chrXIV 359506 . T G 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=50;Dels=0.00;FS=6.990;HaplotypeScore=2.4413;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.485;QD=21.98;ReadPosRankSum=-0.208;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1132,129,0 chrXIV 360000 . T C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=118;Dels=0.00;FS=3.043;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.386;QD=21.12;ReadPosRankSum=2.366;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2525,291,0 chrXIV 360024 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.01;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2654,306,0 chrXIV 360426 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=159;Dels=0.00;FS=6.015;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.361;QD=21.57;ReadPosRankSum=2.880;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3430,402,0 chrXIV 360781 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.97;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3157,345,0 chrXIV 361125 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.0775;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.68;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4196,483,0 chrXIV 361314 . G T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2771;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.24;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3946,447,0 chrXIV 361325 . C G 3847.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.93;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:3847,435,0 chrXIV 361529 . C A 3037 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.69;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3070,336,0 chrXIV 361589 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.5831;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.25;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2114,246,0 chrXIV 361812 . G C 2896 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.83;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2929,339,0 chrXIV 361814 . C A 3071 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.42;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3104,342,0 chrXIV 362100 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.93;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4105,477,0 chrXIV 362483 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.6155;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.10;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3083,339,0 chrXIV 362538 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=121;Dels=0.00;FS=4.735;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.150;QD=23.06;ReadPosRankSum=1.703;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2823,318,0 chrXIV 362544 . C A 2755 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.96;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2788,315,0 chrXIV 362791 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=20.34;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2047,225,0 chrXIV 362793 . C A 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=1.485;QD=18.75;ReadPosRankSum=0.177;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1889,210,0 chrXIV 362807 . A T 1929 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=17.38;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1962,216,0 chrXIV 362940 . T C 2120 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=19.63;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2153,246,0 chrXIV 362946 . A C 2148 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=18.36;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2181,252,0 chrXIV 362970 . G A 2289 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.90;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2322,252,0 chrXIV 362994 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=17.97;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2082,237,0 chrXIV 363010 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=19.81;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2331,258,0 chrXIV 363057 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.41;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2902,318,0 chrXIV 363141 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.96;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3202,360,0 chrXIV 363258 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=24.33;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:3196,345,0 chrXIV 363303 . A G 2806 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.27;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2839,327,0 chrXIV 363378 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=6.471;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;MQRankSum=0.998;QD=20.19;ReadPosRankSum=2.417;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3042,345,0 chrXIV 363390 . G A 2939 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=19.34;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2972,330,0 chrXIV 363393 . T G 2781 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.339;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=-0.929;QD=18.42;ReadPosRankSum=1.686;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2814,327,0 chrXIV 363396 . A G 2803 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=18.56;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2836,327,0 chrXIV 363420 . A G 2296 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=17.26;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2329,267,0 chrXIV 363496 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.418;QD=22.10;ReadPosRankSum=1.702;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2597,291,0 chrXIV 363504 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.02;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2609,294,0 chrXIV 363549 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.30;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2632,288,0 chrXIV 363861 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2891,321,0 chrXIV 364207 . T A 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.207;QD=22.75;ReadPosRankSum=1.499;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3081,336,0 chrXIV 364322 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.32;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2080,228,0 chrXIV 364919 . T C 3045 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.07;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3078,354,0 chrXIV 364966 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.22;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2803,309,0 chrXIV 364967 . A C 2663 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.16;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2696,312,0 chrXIV 365005 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.74;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3014,324,0 chrXIV 365317 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2686,297,0 chrXIV 365449 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.52;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3118,345,0 chrXIV 365714 . C T 4942.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.2832;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.76;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4942,537,0 chrXIV 365801 . A T 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.718;DP=231;Dels=0.00;FS=11.667;HaplotypeScore=10.3461;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.741;QD=18.36;ReadPosRankSum=3.576;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:5,226:231:99:4240,477,0 chrXIV 365802 . T G 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.343;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.7079;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-1.947;QD=17.56;ReadPosRankSum=4.927;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:10,221:234:99:4109,474,0 chrXIV 365824 . A G 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=223;Dels=0.00;FS=14.374;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-0.332;QD=18.82;ReadPosRankSum=2.941;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:3,218:223:99:4196,471,0 chrXIV 365847 . G A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.85;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3884,435,0 chrXIV 365950 . A G 6600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=292;Dels=0.00;FS=2.985;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.867;QD=22.60;ReadPosRankSum=2.399;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:2,288:292:99:6600,768,0 chrXIV 366158 . G T 5789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=254;Dels=0.00;FS=3.207;HaplotypeScore=18.5202;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.162;QD=22.79;ReadPosRankSum=1.718;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:1,248:254:99:5789,642,0 chrXIV 366434 . A C 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2809;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.147;QD=16.63;ReadPosRankSum=1.754;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:2710,312,0 chrXIV 366439 . T A 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.01;FS=4.437;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.300;QD=17.27;ReadPosRankSum=1.686;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2641,294,0 chrXIV 366552 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=173;Dels=0.00;FS=3.941;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.760;QD=19.09;ReadPosRankSum=1.712;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3303,387,0 chrXIV 366581 . G T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2767;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.88;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3500,390,0 chrXIV 366907 . A G 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.444;QD=23.08;ReadPosRankSum=1.675;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2826,321,0 chrXIV 367316 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.34;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2124,243,0 chrXIV 367370 . T A 2352 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.40;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2385,264,0 chrXIV 367380 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.30;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2525,288,0 chrXIV 367499 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.71;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2671,318,0 chrXIV 367502 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=9.855;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-1.480;QD=18.52;ReadPosRankSum=2.346;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:2700,315,0 chrXIV 367644 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.51;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3635,417,0 chrXIV 367843 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.62;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3254,357,0 chrXIV 368045 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.91;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4170,474,0 chrXIV 368183 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.2824;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.95;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3917,426,0 chrXIV 368391 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2478,276,0 chrXIV 368937 . G A 2110 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=19.18;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2143,234,0 chrXIV 368957 . C T 1677 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=16.28;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1710,195,0 chrXIV 368965 . T G 1555 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=2.989;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;MQRankSum=-1.093;QD=15.87;ReadPosRankSum=2.400;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1588,180,0 chrXIV 368967 . A G 1529 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=15.76;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1562,180,0 chrXIV 368998 . T A 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=110;Dels=0.01;FS=6.473;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=-0.305;QD=15.58;ReadPosRankSum=2.359;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1747,192,0 chrXIV 369029 . T A 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=3.590;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.340;QD=19.33;ReadPosRankSum=1.701;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2198,240,0 chrXIV 369143 . A G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-0.217;QD=20.36;ReadPosRankSum=1.701;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2354,276,0 chrXIV 369343 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.38;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2805,306,0 chrXIV 369348 . T C 2728 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=19.21;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2761,315,0 chrXIV 369363 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.51;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2904,324,0 chrXIV 369447 . A T 2812 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.83;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2845,312,0 chrXIV 369514 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=4.260;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.650;QD=20.92;ReadPosRankSum=1.689;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3368,390,0 chrXIV 369528 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.77;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3386,381,0 chrXIV 369591 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.06;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3045,348,0 chrXIV 369651 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.16;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3682,429,0 chrXIV 369711 . A T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.23;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4313,477,0 chrXIV 370196 . T G 4183.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6390;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4183,471,0 chrXIV 371516 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.30;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3457,405,0 chrXIV 371583 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.47;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1714,192,0 chrXIV 371665 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.94;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2293,255,0 chrXIV 371715 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.64;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2515,282,0 chrXIV 371753 . A T 2294 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.9215;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.17;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2327,258,0 chrXIV 372155 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.1613;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.27;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4211,462,0 chrXIV 372259 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.7026;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.50;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3128,348,0 chrXIV 372442 . A G 2210 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.65;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2243,261,0 chrXIV 372919 . T A 5698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=242;Dels=0.00;FS=3.119;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.773;QD=23.55;ReadPosRankSum=1.703;SB=-3.154e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5698,630,0 chrXIV 373080 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.7655;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.11;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3401,381,0 chrXIV 373134 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.3076;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.326;QD=17.40;ReadPosRankSum=1.713;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3148,360,0 chrXIV 373375 . G A 5195.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.1617;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.05;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5195,564,0 chrXIV 373633 . T A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;DP=180;Dels=0.00;FS=12.409;HaplotypeScore=155.7610;MLEAC=1;MLEAF=0.500;MQ=52.24;MQ0=0;MQRankSum=-0.820;QD=0.13;ReadPosRankSum=4.500;SB=-1.791e+03 GT:AD:DP:GQ:PL 0/1:10,169:180:36:54,0,36 chrXIV 373655 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=182;Dels=0.00;FS=2.992;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=1.221;QD=18.95;ReadPosRankSum=2.382;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3449,402,0 chrXIV 373742 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=205;Dels=0.00;FS=2.843;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-1.036;QD=20.35;ReadPosRankSum=2.294;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4171,480,0 chrXIV 373766 . C A 4986.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.7778;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.06;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4986,546,0 chrXIV 373799 . A G 5904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=280;Dels=0.00;FS=10.156;HaplotypeScore=15.9146;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.110;QD=21.09;ReadPosRankSum=2.379;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:2,277:280:99:5904,690,0 chrXIV 373917 . A C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-0.444;QD=19.43;ReadPosRankSum=1.690;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3220,375,0 chrXIV 373925 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=165;Dels=0.00;FS=4.809;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=-0.461;QD=19.07;ReadPosRankSum=3.741;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:5,160:165:99:3180,347,0 chrXIV 373936 . C A 3197 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=19.14;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3230,366,0 chrXIV 373946 . T C 3081 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.90;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3114,354,0 chrXIV 374054 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.32;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:3166,348,0 chrXIV 374078 . G C 2118 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=91.9122;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=18.10;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2151,243,0 chrXIV 374157 . T G 2697 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=14.3235;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.75;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2730,312,0 chrXIV 374306 . A G 2952 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.50;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2985,345,0 chrXIV 374533 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.77;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3328,366,0 chrXIV 374659 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.12;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3562,405,0 chrXIV 374730 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.49;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3674,411,0 chrXIV 374787 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.4998;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.20;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3575,396,0 chrXIV 374839 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=166;Dels=0.00;FS=5.262;HaplotypeScore=26.8247;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.842;QD=18.72;ReadPosRankSum=3.152;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:4,161:166:99:3140,363,0 chrXIV 375027 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.13;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2400,273,0 chrXIV 375075 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.89;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2289,258,0 chrXIV 375110 . A G 1681 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.28;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1714,201,0 chrXIV 375848 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.7565;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.16;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4122,462,0 chrXIV 375878 . A G 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.308;QD=21.44;ReadPosRankSum=1.713;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3881,438,0 chrXIV 376253 . T C 2195 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8275;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.90;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2228,258,0 chrXIV 376289 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.91;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3117,345,0 chrXIV 376313 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.23;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3415,378,0 chrXIV 376346 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.72;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3183,360,0 chrXIV 376490 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.474;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.329;QD=20.91;ReadPosRankSum=1.688;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3325,390,0 chrXIV 376643 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.8910;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.10;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3477,405,0 chrXIV 376658 . T G 3160 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.48;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3193,375,0 chrXIV 376728 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.00;FS=4.991;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.537;QD=18.77;ReadPosRankSum=1.659;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2717,309,0 chrXIV 376841 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=132;Dels=0.00;FS=7.450;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-0.181;QD=19.92;ReadPosRankSum=2.373;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,127:132:99:2662,303,0 chrXIV 376853 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=20.62;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2775,306,0 chrXIV 376874 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.03;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2269,261,0 chrXIV 377057 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.8540;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.80;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3999,444,0 chrXIV 377102 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.8734;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.92;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3920,444,0 chrXIV 377864 . T C 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=202;Dels=0.00;FS=5.187;HaplotypeScore=6.7516;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.732;QD=20.96;ReadPosRankSum=3.399;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:4,197:202:99:4233,483,0 chrXIV 377887 . G T 4724.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.18;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4724,519,0 chrXIV 377969 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.5224;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.69;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3925,456,0 chrXIV 378062 . G T 4871.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.76;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4871,561,0 chrXIV 379036 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2393,282,0 chrXIV 379132 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2857,315,0 chrXIV 379436 . A T 48.97 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=68.2489;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=0.63;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:9:81,9,0 chrXIV 379700 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.16;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3312,363,0 chrXIV 380470 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=173;Dels=0.00;FS=5.406;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.076;QD=21.61;ReadPosRankSum=2.948;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3739,426,0 chrXIV 380699 . G T 2387 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.31;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2420,279,0 chrXIV 380819 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=108;Dels=0.00;FS=3.020;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;MQRankSum=-0.380;QD=22.05;ReadPosRankSum=2.404;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2414,288,0 chrXIV 380855 . A G 2139 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=21.18;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2172,261,0 chrXIV 380857 . A G 2041 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=20.83;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2074,251,0 chrXIV 380871 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=18.46;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1897,228,0 chrXIV 380921 . C T 853 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;QD=12.19;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:886,99,0 chrXIV 380926 . T C 697 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;MQRankSum=-1.586;QD=9.82;ReadPosRankSum=1.683;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:87:730,87,0 chrXIV 380930 . C T 689 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=10.44;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:81:722,81,0 chrXIV 380983 . G A 552 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4401;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=6.73;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:72:585,72,0 chrXIV 381140 . A C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=-1.425;QD=23.05;ReadPosRankSum=1.688;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1854,210,0 chrXIV 381243 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=18.76;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1309,147,0 chrXIV 381267 . C A 1153 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=17.47;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1186,132,0 chrXIV 381279 . A T 1072 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=13.40;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1105,126,0 chrXIV 381299 . G T 1910 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.52;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1943,219,0 chrXIV 381662 . G A 2363 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.0667;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.63;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2396,267,0 chrXIV 381762 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.93;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2234,255,0 chrXIV 381889 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2110,231,0 chrXIV 382139 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.81;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2360,273,0 chrXIV 382260 . T C 1171 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.9481;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=16.73;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1204,144,0 chrXIV 382331 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.19;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1587,174,0 chrXIV 382352 . G A 1295 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.89;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1328,153,0 chrXIV 382693 . T A 2288 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2321,273,0 chrXIV 383033 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4043,447,0 chrXIV 383280 . C T 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=129;Dels=0.00;FS=3.547;HaplotypeScore=8.9299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.363;QD=23.47;ReadPosRankSum=0.631;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3060,336,0 chrXIV 383575 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2742,300,0 chrXIV 383618 . C T 2379 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2412,264,0 chrXIV 383709 . A T 2298 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2331,267,0 chrXIV 383790 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1503,165,0 chrXIV 384031 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.59;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2486,273,0 chrXIV 384325 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.99;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3937,462,0 chrXIV 385111 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.859;QD=21.70;ReadPosRankSum=1.703;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2615,297,0 chrXIV 385472 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.54;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3343,366,0 chrXIV 385521 . T A 3128 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.34;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3161,342,0 chrXIV 385702 . A T 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=144;Dels=0.00;FS=6.089;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.322;QD=20.70;ReadPosRankSum=2.853;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3014,342,0 chrXIV 386006 . T C 2818 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2851,324,0 chrXIV 386350 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.2111;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.07;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3162,342,0 chrXIV 386488 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3201,369,0 chrXIV 386641 . G A 2375 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.1769;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.06;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2408,264,0 chrXIV 386898 . A C 2826 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.91;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2859,327,0 chrXIV 387197 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.07;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2372,264,0 chrXIV 387361 . A G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.127;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.579;QD=21.46;ReadPosRankSum=1.671;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2458,285,0 chrXIV 387524 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=153;Dels=0.00;FS=2.962;HaplotypeScore=6.5768;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.942;QD=20.95;ReadPosRankSum=2.417;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3238,372,0 chrXIV 387540 . T C 2668 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.37;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2701,306,0 chrXIV 387874 . T C 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=5.217;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.056;QD=21.41;ReadPosRankSum=1.648;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2667,312,0 chrXIV 388136 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1765,195,0 chrXIV 388507 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.52;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2690,303,0 chrXIV 388819 . T C 1696 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.43;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1729,195,0 chrXIV 388979 . C A 1612 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.19;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1645,183,0 chrXIV 389011 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.95;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1868,204,0 chrXIV 389281 . T G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.180;QD=18.38;ReadPosRankSum=1.701;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2110,240,0 chrXIV 389282 . A G 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=114;Dels=0.00;FS=7.054;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.868;QD=18.27;ReadPosRankSum=2.362;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2116,237,0 chrXIV 389356 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.18;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2807,312,0 chrXIV 389817 . G T 1957 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1990,219,0 chrXIV 389873 . A T 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.831;QD=23.21;ReadPosRankSum=1.685;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1727,189,0 chrXIV 390263 . G A 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.965;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.833;QD=20.59;ReadPosRankSum=-0.172;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2771,288,0 chrXIV 390377 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.8724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3410,381,0 chrXIV 390614 . G C 4827.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.0707;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.45;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4827,555,0 chrXIV 390716 . C G 3575.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6893;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3575,426,0 chrXIV 390840 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=171;Dels=0.00;FS=7.192;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.424;QD=20.58;ReadPosRankSum=2.392;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3520,402,0 chrXIV 390845 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.7551;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.25;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3523,390,0 chrXIV 391235 . G A 5515.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5515,600,0 chrXIV 391590 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=191;Dels=0.00;FS=9.096;HaplotypeScore=8.2246;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.058;QD=13.85;ReadPosRankSum=2.424;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:2679,306,0 chrXIV 391599 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=15.87;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3144,348,0 chrXIV 391752 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.577;QD=22.74;ReadPosRankSum=1.701;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2603,297,0 chrXIV 391796 . G A 2346 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.5492;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.71;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2379,279,0 chrXIV 391961 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1088;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.18;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:2956,327,0 chrXIV 391970 . T C 2561 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.4437;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.40;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2594,300,0 chrXIV 392063 . A G 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.187;QD=21.72;ReadPosRankSum=1.615;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1988,231,0 chrXIV 392128 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.22;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2819,315,0 chrXIV 392225 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.73;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1899,210,0 chrXIV 392346 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.516;QD=24.19;ReadPosRankSum=1.559;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1968,225,0 chrXIV 392589 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.62;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2973,327,0 chrXIV 392734 . A G 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=198;Dels=0.00;FS=4.194;HaplotypeScore=13.5396;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.519;QD=22.15;ReadPosRankSum=1.714;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4386,507,0 chrXIV 392820 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.67;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3728,435,0 chrXIV 393022 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.2421;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.22;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3258,375,0 chrXIV 393050 . A G 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=6.504;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.646;QD=16.69;ReadPosRankSum=2.273;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2353,273,0 chrXIV 393053 . A C 2449 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.14;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2482,285,0 chrXIV 393703 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.2918;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.43;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4667,519,0 chrXIV 393899 . C T 5276.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.55;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5276,579,0 chrXIV 393905 . T C 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=250;Dels=0.00;FS=3.414;HaplotypeScore=5.7132;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.042;QD=20.20;ReadPosRankSum=1.704;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5049,567,0 chrXIV 394160 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=3.7504;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=14.94;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:3854,447,0 chrXIV 394167 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=268;Dels=0.00;FS=2.840;HaplotypeScore=5.7617;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.334;QD=14.49;ReadPosRankSum=2.413;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:3883,444,0 chrXIV 394187 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=6.0755;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=12.87;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,310:310:99:3989,447,0 chrXIV 394241 . G A 4586.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=9.1626;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=15.44;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:4586,516,0 chrXIV 394277 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.2844;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.48;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4084,447,0 chrXIV 394329 . C A 3185 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=1;QD=21.23;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3218,360,0 chrXIV 394625 . G A 538 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:63:571,63,0 chrXIV 395047 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.8388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4041,438,0 chrXIV 395201 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.5526;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.50;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3532,390,0 chrXIV 395338 . T C 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=98;Dels=0.00;FS=3.191;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.601;QD=20.26;ReadPosRankSum=1.697;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2018,237,0 chrXIV 395587 . A G 2794 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=12.1782;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.35;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2827,324,0 chrXIV 395734 . A G 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.383;QD=22.60;ReadPosRankSum=1.657;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3175,357,0 chrXIV 396260 . T C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=4.061;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.321;QD=19.93;ReadPosRankSum=1.655;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2743,306,0 chrXIV 396272 . T C 2673 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9469;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.37;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2706,309,0 chrXIV 396424 . A T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.86;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4160,474,0 chrXIV 396664 . A G 4608.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.1882;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.37;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4608,513,0 chrXIV 396880 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=18.0050;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.84;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3626,423,0 chrXIV 396952 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.718;QD=20.34;ReadPosRankSum=2.351;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2576,291,0 chrXIV 396967 . T C 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=119;Dels=0.00;FS=6.133;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.812;QD=18.76;ReadPosRankSum=2.650;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2265,264,0 chrXIV 397036 . T C 2619 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.26;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2652,306,0 chrXIV 397207 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.46;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2975,339,0 chrXIV 397399 . A G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.579;QD=19.96;ReadPosRankSum=1.701;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2289,264,0 chrXIV 397417 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.35;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2070,231,0 chrXIV 397432 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.29;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2125,243,0 chrXIV 397508 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.13;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2622,291,0 chrXIV 397509 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.04;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2612,291,0 chrXIV 397597 . T G 2218 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.12;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2251,261,0 chrXIV 397680 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=23.43;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2540,273,0 chrXIV 397732 . C A 1926 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=21.89;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1959,222,0 chrXIV 397733 . T G 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.080;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=0.697;QD=21.84;ReadPosRankSum=1.692;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1933,222,0 chrXIV 397787 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=17.94;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1648,183,0 chrXIV 397797 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=16.83;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1497,174,0 chrXIV 397986 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.613;QD=21.87;ReadPosRankSum=2.415;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3117,354,0 chrXIV 397996 . T G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.427;QD=20.22;ReadPosRankSum=1.657;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2824,336,0 chrXIV 398211 . A G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=138;Dels=0.00;FS=2.665;HaplotypeScore=8.2783;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.319;QD=20.41;ReadPosRankSum=2.360;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2849,321,0 chrXIV 398693 . A G 1431 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1464,165,0 chrXIV 398753 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2119,231,0 chrXIV 398966 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2150,249,0 chrXIV 399176 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2491,288,0 chrXIV 400049 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.1498;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.373;QD=18.83;ReadPosRankSum=1.667;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2048,243,0 chrXIV 400336 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.06;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3191,345,0 chrXIV 400409 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.59;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3939,438,0 chrXIV 400449 . T C 4725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=2.915;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.275;QD=23.51;ReadPosRankSum=2.425;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4725,531,0 chrXIV 400727 . G A 2078 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=17.46;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2111,240,0 chrXIV 400773 . A G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=113;Dels=0.00;FS=3.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;MQRankSum=-2.080;QD=13.32;ReadPosRankSum=2.406;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1538,174,0 chrXIV 400777 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=13.06;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1470,165,0 chrXIV 400788 . G T 1354 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;QD=12.90;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1387,153,0 chrXIV 400794 . C T 1400 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=0;QD=13.59;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1433,156,0 chrXIV 400797 . T C 1308 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.310;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=0;MQRankSum=-1.534;QD=12.46;ReadPosRankSum=1.666;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1341,156,0 chrXIV 400813 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=14.03;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1534,171,0 chrXIV 400821 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=14.44;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1593,186,0 chrXIV 400901 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.70;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2682,306,0 chrXIV 400998 . T C 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.493;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-0.228;QD=22.00;ReadPosRankSum=1.687;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1727,195,0 chrXIV 401015 . T A 1585 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=19.33;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1618,183,0 chrXIV 401090 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.13;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2799,312,0 chrXIV 401174 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.361;QD=23.32;ReadPosRankSum=1.682;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,138:142:99:3311,378,0 chrXIV 401240 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.53;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2784,306,0 chrXIV 401251 . A T 2875 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.43;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2908,321,0 chrXIV 401366 . C G 3465.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9506;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.26;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3465,405,0 chrXIV 401430 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.49;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3284,363,0 chrXIV 401498 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.03;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2956,336,0 chrXIV 401852 . A G 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.422;QD=22.07;ReadPosRankSum=1.676;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,122:127:99:2836,324,0 chrXIV 401891 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.43;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2612,297,0 chrXIV 402265 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=22.08;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4063,465,0 chrXIV 402281 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=192;Dels=0.00;FS=6.812;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-1.816;QD=20.51;ReadPosRankSum=2.359;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:3937,459,0 chrXIV 402308 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=17.99;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3598,417,0 chrXIV 402321 . A G 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=4.016;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.068;QD=16.31;ReadPosRankSum=1.655;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:2953,348,0 chrXIV 402413 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.34;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3063,354,0 chrXIV 402455 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.00;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3193,369,0 chrXIV 402461 . A C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.703;QD=19.34;ReadPosRankSum=1.692;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3384,393,0 chrXIV 402525 . A G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.5017;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-1.178;QD=19.23;ReadPosRankSum=2.399;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2822,312,0 chrXIV 402732 . T A 3007 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.87;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3040,333,0 chrXIV 402968 . T G 2608 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.38;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2641,297,0 chrXIV 403014 . A G 2435 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.97;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2468,273,0 chrXIV 404051 . A G 3169 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3202,375,0 chrXIV 404479 . C T 4668.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.02;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4668,522,0 chrXIV 404610 . A G 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=184;Dels=0.00;FS=10.493;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.067;QD=21.61;ReadPosRankSum=2.961;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:3,177:184:99:3977,444,0 chrXIV 404620 . C T 4341.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.09;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4341,477,0 chrXIV 404770 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.93;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3062,336,0 chrXIV 404818 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.84;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2910,318,0 chrXIV 404995 . A G 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.185;QD=22.00;ReadPosRankSum=1.687;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1727,198,0 chrXIV 405028 . T A 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=3.438;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.624;QD=19.92;ReadPosRankSum=1.570;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1308,144,0 chrXIV 405043 . A C 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.543;QD=18.91;ReadPosRankSum=1.681;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1300,147,0 chrXIV 405097 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.36;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1679,189,0 chrXIV 405175 . T A 1864 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1897,210,0 chrXIV 405594 . T C 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.039;QD=20.55;ReadPosRankSum=1.703;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2499,285,0 chrXIV 405652 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.76;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3174,357,0 chrXIV 405754 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.12;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3560,399,0 chrXIV 405779 . T G 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.462;QD=21.88;ReadPosRankSum=1.703;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2681,306,0 chrXIV 405802 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.07;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2389,276,0 chrXIV 405806 . A G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=133;Dels=0.00;FS=10.175;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-2.489;QD=15.86;ReadPosRankSum=2.855;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2142,249,0 chrXIV 405841 . T C 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.044;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.410;QD=15.02;ReadPosRankSum=1.706;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2016,228,0 chrXIV 405847 . T C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.337;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.879;QD=15.05;ReadPosRankSum=1.657;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2110,243,0 chrXIV 405961 . A T 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=3.041;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.472;QD=21.27;ReadPosRankSum=2.343;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2968,327,0 chrXIV 406074 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.65;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3021,339,0 chrXIV 406133 . A G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=129;Dels=0.00;FS=7.001;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.959;QD=22.22;ReadPosRankSum=2.333;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2900,330,0 chrXIV 406194 . T C 3080 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.65;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3113,351,0 chrXIV 406274 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.86;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3794,435,0 chrXIV 406753 . A T 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=193;Dels=0.00;FS=4.467;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.050;QD=24.95;ReadPosRankSum=1.714;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4815,525,0 chrXIV 407152 . T G 2648 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2681,312,0 chrXIV 407285 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=176;Dels=0.00;FS=4.226;HaplotypeScore=12.7858;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.410;QD=22.33;ReadPosRankSum=1.672;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,171:176:99:3930,444,0 chrXIV 408124 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.95;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3281,366,0 chrXIV 408238 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.5676;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.840;QD=22.98;ReadPosRankSum=1.649;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3837,447,0 chrXIV 408508 . G A 4839.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.5492;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.77;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4839,546,0 chrXIV 408833 . T A 7209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.781;DP=340;Dels=0.00;FS=17.642;HaplotypeScore=26.8348;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.802;QD=21.20;ReadPosRankSum=3.786;SB=-3.824e+03 GT:AD:DP:GQ:PL 1/1:5,335:340:99:7209,789,0 chrXIV 409055 . G C 5135.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.04;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5135,594,0 chrXIV 409114 . G A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=18.3292;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.00;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3740,408,0 chrXIV 409315 . T G 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.824;QD=23.76;ReadPosRankSum=1.695;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4467,522,0 chrXIV 409622 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=171;Dels=0.00;FS=12.729;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.547;QD=22.09;ReadPosRankSum=2.935;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3777,452,0 chrXIV 410737 . A G 5469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.188;DP=263;Dels=0.00;FS=8.913;HaplotypeScore=23.3038;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.402;QD=20.79;ReadPosRankSum=3.414;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:4,258:263:99:5469,639,0 chrXIV 410941 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=213;Dels=0.00;FS=6.292;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.110;QD=20.04;ReadPosRankSum=2.392;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4269,486,0 chrXIV 410953 . A T 4665.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.85;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4665,534,0 chrXIV 411040 . G A 3138 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.78;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3171,363,0 chrXIV 411493 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.0632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4411,492,0 chrXIV 411667 . T A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.83;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3277,366,0 chrXIV 411928 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.35;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2983,333,0 chrXIV 411943 . G C 2617 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.94;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2650,303,0 chrXIV 411964 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.96;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2536,288,0 chrXIV 412116 . T C 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=181;Dels=0.00;FS=3.032;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-0.662;QD=22.15;ReadPosRankSum=2.395;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4010,468,0 chrXIV 412258 . G A 2315 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=3.5886;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=15.43;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2348,261,0 chrXIV 412260 . A G 2186 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.7565;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;MQRankSum=-1.314;QD=14.67;ReadPosRankSum=1.686;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2219,252,0 chrXIV 412268 . T C 1691 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=12.53;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1724,195,0 chrXIV 412269 . C T 1644 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=0;QD=12.36;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:1677,195,0 chrXIV 412273 . G A 1930 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=13.31;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:1963,219,0 chrXIV 412313 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=15.13;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2333,273,0 chrXIV 412320 . A G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.257;DP=149;Dels=0.00;FS=2.636;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;MQRankSum=-0.108;QD=15.37;ReadPosRankSum=0.457;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:2323,243,0 chrXIV 412369 . A T 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=0.283;QD=18.30;ReadPosRankSum=1.683;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2613,303,0 chrXIV 412401 . C T 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.694;DP=124;Dels=0.00;FS=5.472;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;MQRankSum=-1.339;QD=17.52;ReadPosRankSum=-0.149;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:3,119:124:99:2206,243,0 chrXIV 412406 . C T 2094 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=17.31;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2127,234,0 chrXIV 412446 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=92.5202;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=19.10;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2038,228,0 chrXIV 412559 . T C 1491 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=17.75;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1524,177,0 chrXIV 412586 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.604;DP=75;Dels=0.00;FS=7.489;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=3.154;QD=0.21;ReadPosRankSum=-3.643;SB=1.24 GT:AD:DP:GQ:PL 1/1:70,5:75:6:47,6,0 chrXIV 412609 . G T 1780 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=16.95;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1813,204,0 chrXIV 412736 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.78;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2903,324,0 chrXIV 413553 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1624,189,0 chrXIV 413686 . G T 2733 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.19;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2766,306,0 chrXIV 414010 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.72;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4106,471,0 chrXIV 414025 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.56;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3880,429,0 chrXIV 414979 . G C 1000 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.83;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1033,117,0 chrXIV 415654 . A T 1463 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.8367;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.60;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1496,162,0 chrXIV 415788 . A G 977 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=15.03;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1010,114,0 chrXIV 415793 . A T 1019 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=15.92;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1052,117,0 chrXIV 415844 . A G 898 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;QD=12.14;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:931,108,0 chrXIV 415849 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=11.93;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:904,99,0 chrXIV 415877 . G A 776 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=11.25;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:93:809,93,0 chrXIV 416164 . T C 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=7.360;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.131;QD=20.85;ReadPosRankSum=1.697;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2118,240,0 chrXIV 416179 . T C 1995 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.18;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2028,240,0 chrXIV 416259 . A G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.469;QD=17.94;ReadPosRankSum=1.688;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1468,168,0 chrXIV 416450 . C G 2462 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.38;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2495,285,0 chrXIV 416620 . T G 1819 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.65;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1852,213,0 chrXIV 416832 . G T 1423 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.53;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1456,165,0 chrXIV 416991 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3069,354,0 chrXIV 417025 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.3676;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.03;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3532,396,0 chrXIV 417084 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3063,354,0 chrXIV 417156 . T A 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.285;QD=23.75;ReadPosRankSum=1.708;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3468,378,0 chrXIV 417400 . T A 796 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=16.24;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:829,93,0 chrXIV 417405 . G A 816 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=17.74;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:849,96,0 chrXIV 417421 . C T 457 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=14.28;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:490,54,0 chrXIV 417439 . G A 479 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=14.09;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:512,57,0 chrXIV 417659 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.21;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2210,258,0 chrXIV 417758 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3246,357,0 chrXIV 418066 . A G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1762;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.057;QD=18.27;ReadPosRankSum=1.673;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2207,258,0 chrXIV 418123 . T C 2548 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.01;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2581,300,0 chrXIV 418291 . A G 1825 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=14.15;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1858,216,0 chrXIV 418300 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=15.75;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2065,240,0 chrXIV 418324 . A G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.293;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=1.249;QD=20.50;ReadPosRankSum=1.705;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2677,306,0 chrXIV 418437 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.0649;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=23.10;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3327,369,0 chrXIV 418494 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=6.995;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=0.055;QD=22.04;ReadPosRankSum=2.418;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3460,393,0 chrXIV 418511 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.8864;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=22.07;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3376,381,0 chrXIV 418565 . T C 2024 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=21.31;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2057,240,0 chrXIV 418571 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=22.73;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2079,234,0 chrXIV 418687 . T C 2111 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=20.90;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2144,243,0 chrXIV 418690 . C T 2089 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=21.32;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2122,237,0 chrXIV 418723 . T A 1331 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=17.06;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1364,156,0 chrXIV 418735 . T C 904 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=14.35;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:937,111,0 chrXIV 418738 . G A 927 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=15.71;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:960,108,0 chrXIV 418741 . C T 828 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=14.79;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:861,102,0 chrXIV 418746 . G A 698 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=13.17;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:731,81,0 chrXIV 418767 . G A 527 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=13.17;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:560,63,0 chrXIV 418776 . G A 427 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.94;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:460,51,0 chrXIV 418804 . G A 555 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=15.86;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:63:588,63,0 chrXIV 418811 . T C 503 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=16.23;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:63:536,63,0 chrXIV 418814 . C T 549 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=17.16;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:63:582,63,0 chrXIV 418818 . A G 541 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=15.46;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:66:574,66,0 chrXIV 418866 . A T 721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=0.234;QD=19.49;ReadPosRankSum=1.639;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,36:37:81:754,81,0 chrXIV 419029 . T C 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.547;QD=22.03;ReadPosRankSum=1.686;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1685,192,0 chrXIV 419038 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.34;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1676,186,0 chrXIV 419074 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.53;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1734,195,0 chrXIV 419161 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.62;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2198,243,0 chrXIV 419170 . T C 2286 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.86;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2319,264,0 chrXIV 419202 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=15.72;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2328,255,0 chrXIV 419205 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=15.43;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2317,255,0 chrXIV 419323 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6538;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.75;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2585,294,0 chrXIV 419479 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.51;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2847,324,0 chrXIV 419643 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.9962;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.47;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2910,327,0 chrXIV 419861 . A G 3202 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.35;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3235,372,0 chrXIV 420029 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3668,402,0 chrXIV 420063 . T C 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.525;QD=23.34;ReadPosRankSum=1.706;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3160,363,0 chrXIV 420094 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8497;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.53;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2827,315,0 chrXIV 420156 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.127;QD=20.65;ReadPosRankSum=2.416;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3027,351,0 chrXIV 420851 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2998,333,0 chrXIV 420944 . T C 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.389;QD=20.35;ReadPosRankSum=1.675;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2495,279,0 chrXIV 421114 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.34;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2741,312,0 chrXIV 421209 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.50;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2373,261,0 chrXIV 421210 . C G 2212 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.43;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2245,261,0 chrXIV 421317 . G C 3821.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.88;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3821,438,0 chrXIV 421353 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=171;Dels=0.00;FS=8.857;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.524;QD=19.22;ReadPosRankSum=2.392;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3287,372,0 chrXIV 421359 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.144;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-2.101;QD=17.05;ReadPosRankSum=2.348;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:2932,339,0 chrXIV 421393 . G C 3387.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.4992;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.35;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3387,393,0 chrXIV 421532 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.81;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4121,471,0 chrXIV 421548 . A G 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.9018;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.668;QD=22.14;ReadPosRankSum=1.716;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:4848,552,0 chrXIV 421666 . G A 4192.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.4277;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.30;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4192,465,0 chrXIV 421838 . T C 3215 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.43;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3248,372,0 chrXIV 421898 . G A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.53;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3639,405,0 chrXIV 422081 . A T 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=4.082;HaplotypeScore=5.0600;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.191;QD=22.33;ReadPosRankSum=1.696;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4287,477,0 chrXIV 422171 . C T 3969.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.05;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3969,438,0 chrXIV 422213 . T A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=20.43;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3534,390,0 chrXIV 422216 . A T 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-1.282;QD=19.40;ReadPosRankSum=1.654;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3434,396,0 chrXIV 422309 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.64;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3343,384,0 chrXIV 422360 . T G 2562 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.57;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2595,303,0 chrXIV 422369 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.10;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2593,294,0 chrXIV 422402 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=16.97;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2036,231,0 chrXIV 422411 . A C 1839 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=15.58;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1872,213,0 chrXIV 422528 . A T 2897 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.14;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2930,330,0 chrXIV 422665 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.96;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3085,348,0 chrXIV 422693 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.14;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3749,417,0 chrXIV 423011 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.28;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3409,381,0 chrXIV 423266 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.4259;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.21;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2238,246,0 chrXIV 423311 . A G 1985 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.35;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2018,231,0 chrXIV 423792 . C T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4158,462,0 chrXIV 423980 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0056;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.06;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3517,411,0 chrXIV 424121 . A G 3091 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.24;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3124,366,0 chrXIV 424217 . A G 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=121;Dels=0.00;FS=3.643;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.294;QD=16.13;ReadPosRankSum=1.703;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,117:121:99:1985,231,0 chrXIV 424220 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=17.94;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2275,252,0 chrXIV 424418 . T C 2747 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.13;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2780,321,0 chrXIV 425075 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9196;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.37;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4253,468,0 chrXIV 425258 . A C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=191;Dels=0.00;FS=2.580;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.718;QD=19.91;ReadPosRankSum=2.963;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:3,187:191:99:3803,429,0 chrXIV 425369 . A G 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=204;Dels=0.00;FS=10.534;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.787;QD=23.13;ReadPosRankSum=2.946;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:4719,537,0 chrXIV 425456 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.819;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.163;QD=23.42;ReadPosRankSum=1.645;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3747,423,0 chrXIV 425480 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.50;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3757,441,0 chrXIV 425507 . C T 4652.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.61;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4652,510,0 chrXIV 425816 . G A 6219.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=18.3787;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.58;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6219,687,0 chrXIV 425890 . A G 5849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.026;QD=21.91;ReadPosRankSum=1.719;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:1,264:267:99:5849,657,0 chrXIV 426007 . G C 6070.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=10.9972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.08;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:6070,699,0 chrXIV 426089 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.9291;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.88;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4529,504,0 chrXIV 426161 . G A 4336.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.6433;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.70;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4336,509,0 chrXIV 426226 . A T 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.653;QD=23.17;ReadPosRankSum=1.668;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4982,567,0 chrXIV 426290 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=194;Dels=0.00;FS=6.366;HaplotypeScore=12.1974;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.292;QD=21.99;ReadPosRankSum=2.399;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4266,486,0 chrXIV 426428 . T A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.0122;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.85;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4108,456,0 chrXIV 426629 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.47;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2116,243,0 chrXIV 426647 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.40;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2175,243,0 chrXIV 426745 . C G 2364 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.89;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2397,279,0 chrXIV 426877 . A T 652 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:75:685,75,0 chrXIV 426977 . C A 499 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.68;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:60:532,60,0 chrXIV 427042 . C G 1394 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=11.8008;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=19.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1427,162,0 chrXIV 427089 . A T 2628 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=23.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2661,288,0 chrXIV 427278 . A G 3055 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.08;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3088,357,0 chrXIV 427279 . A G 3065 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.24;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3098,354,0 chrXIV 427333 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.672;DP=188;Dels=0.00;FS=5.983;HaplotypeScore=22.1843;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.801;QD=17.60;ReadPosRankSum=2.952;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:3308,384,0 chrXIV 427388 . C T 4748.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.27;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4748,522,0 chrXIV 427451 . A G 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=208;Dels=0.00;FS=4.964;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.912;QD=21.00;ReadPosRankSum=1.715;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4369,513,0 chrXIV 427601 . T G 6617.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.90;SB=-3.627e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:6617,768,0 chrXIV 427654 . C T 5921.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.13;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5921,648,0 chrXIV 427909 . G A 5590.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.92;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5590,612,0 chrXIV 427917 . C T 5357.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.06;SB=-3.087e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5357,621,0 chrXIV 427926 . T C 5215.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=6.7538;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.53;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5215,603,0 chrXIV 428064 . T C 6920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=12.0141;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.252;QD=20.29;ReadPosRankSum=1.650;SB=-3.989e+03 GT:AD:DP:GQ:PL 1/1:1,338:341:99:6920,812,0 chrXIV 428076 . T C 6290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.023;QD=20.36;ReadPosRankSum=1.721;SB=-3.800e+03 GT:AD:DP:GQ:PL 1/1:1,307:309:99:6290,734,0 chrXIV 428364 . C T 5333.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=14.1600;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.75;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5333,591,0 chrXIV 428450 . T G 5833.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.21;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:5833,669,0 chrXIV 428672 . C T 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.4792;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.028;QD=18.55;ReadPosRankSum=-0.152;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4043,406,0 chrXIV 428693 . C T 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=201;Dels=0.00;FS=4.437;HaplotypeScore=4.8894;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.502;QD=18.41;ReadPosRankSum=-0.416;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:3701,426,0 chrXIV 428703 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.416;DP=188;Dels=0.00;FS=2.599;HaplotypeScore=8.4015;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-0.112;QD=18.31;ReadPosRankSum=1.512;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3443,365,0 chrXIV 428763 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.42;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2238,255,0 chrXIV 428844 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.85;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2473,276,0 chrXIV 428861 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=20.62;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2301,258,0 chrXIV 428883 . T C 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=8.553;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=1.168;QD=18.98;ReadPosRankSum=1.652;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1665,186,0 chrXIV 428937 . G A 575 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=13.69;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:608,66,0 chrXIV 428938 . G A 589 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=14.72;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:622,69,0 chrXIV 428945 . A T 492 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.71;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:57:525,57,0 chrXIV 428948 . G A 461 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.82;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:494,54,0 chrXIV 428969 . A G 482 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.27;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:60:515,60,0 chrXIV 428970 . C T 477 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=9.00;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:60:510,60,0 chrXIV 428978 . A G 696 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=10.87;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:84:729,84,0 chrXIV 429024 . T C 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-0.060;QD=15.11;ReadPosRankSum=2.401;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1574,183,0 chrXIV 429042 . T C 2014 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.14;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2047,237,0 chrXIV 429269 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=3.307;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.275;QD=21.85;ReadPosRankSum=1.713;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3999,450,0 chrXIV 429408 . C T 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.159;QD=21.08;ReadPosRankSum=-1.684;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3111,348,0 chrXIV 429495 . A G 2967 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.31;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3000,345,0 chrXIV 429773 . T G 101.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=11.25;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,8:9:15:134,15,0 chrXIV 429940 . G A 908 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.92;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:941,108,0 chrXIV 429959 . T A 1124 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.3931;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.21;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1157,123,0 chrXIV 430108 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=24.5803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.737;QD=22.18;ReadPosRankSum=2.374;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3615,420,0 chrXIV 430147 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=5.582;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.529;QD=22.86;ReadPosRankSum=1.677;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,187:192:99:4389,516,0 chrXIV 430248 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.93;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3348,387,0 chrXIV 430758 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.07;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3321,384,0 chrXIV 430923 . T A 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=182;Dels=0.00;FS=2.971;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.344;QD=23.74;ReadPosRankSum=2.328;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4320,495,0 chrXIV 431004 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.0195;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.50;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3995,438,0 chrXIV 431058 . A G 2774 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=17.67;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2807,321,0 chrXIV 431063 . T C 2736 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=16.58;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2769,324,0 chrXIV 431072 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.438;QD=16.97;ReadPosRankSum=1.692;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3003,339,0 chrXIV 431301 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=3.296;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.211;QD=22.14;ReadPosRankSum=1.692;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3831,441,0 chrXIV 432400 . A T 3181 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3214,357,0 chrXIV 432822 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.929;QD=23.06;ReadPosRankSum=1.709;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3505,396,0 chrXIV 433041 . T A 2917 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.77;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2950,330,0 chrXIV 433080 . T C 2950 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2983,342,0 chrXIV 433148 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.34;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2669,297,0 chrXIV 433271 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.09;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3438,372,0 chrXIV 433374 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=6.974;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=2.256;QD=21.81;ReadPosRankSum=2.327;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3108,366,0 chrXIV 433431 . A T 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.631;QD=21.55;ReadPosRankSum=1.652;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3706,429,0 chrXIV 433446 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=169;Dels=0.00;FS=8.477;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.051;QD=20.31;ReadPosRankSum=2.406;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3433,399,0 chrXIV 433506 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.74;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3011,336,0 chrXIV 433629 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.78;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2070,240,0 chrXIV 433631 . C G 2073 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.13;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2106,237,0 chrXIV 433680 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.1629;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.02;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2195,246,0 chrXIV 433706 . T A 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=5.044;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.136;QD=19.38;ReadPosRankSum=1.702;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2262,261,0 chrXIV 434004 . C T 5529.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.79;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5529,600,0 chrXIV 434046 . T G 4650.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.13;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4650,546,0 chrXIV 434152 . G A 4676.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.26;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4676,513,0 chrXIV 434205 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=190;Dels=0.00;FS=6.067;HaplotypeScore=13.7232;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.766;QD=20.84;ReadPosRankSum=1.714;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3959,444,0 chrXIV 434322 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.81;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2613,285,0 chrXIV 434340 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.76;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2415,273,0 chrXIV 434346 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.771;QD=18.78;ReadPosRankSum=1.703;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2287,258,0 chrXIV 434504 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.17;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3026,351,0 chrXIV 434692 . A T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.5253;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.05;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4472,495,0 chrXIV 434839 . T C 4777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=212;Dels=0.00;FS=2.843;HaplotypeScore=12.8747;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.567;QD=22.53;ReadPosRankSum=2.403;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4777,549,0 chrXIV 435037 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.64;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,179:184:99:4166,456,0 chrXIV 435082 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.82;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3606,411,0 chrXIV 435326 . C G 3991.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3991,468,0 chrXIV 435509 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.2497;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.86;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3817,417,0 chrXIV 435604 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=146;Dels=0.00;FS=2.994;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.212;QD=20.58;ReadPosRankSum=2.399;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3037,348,0 chrXIV 435739 . A G 2383 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.09;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2416,282,0 chrXIV 435841 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0762;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.71;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3906,450,0 chrXIV 435886 . G T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7983;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.59;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3497,402,0 chrXIV 435955 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.68;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2873,333,0 chrXIV 436441 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.594;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.654;QD=22.34;ReadPosRankSum=1.663;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3373,396,0 chrXIV 436534 . A G 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.288;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.456;QD=21.98;ReadPosRankSum=1.701;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2517,282,0 chrXIV 436540 . T C 2292 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.93;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2325,264,0 chrXIV 436636 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.26;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2987,333,0 chrXIV 436888 . A C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.437;QD=20.21;ReadPosRankSum=1.672;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2357,270,0 chrXIV 436906 . A G 1890 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=15.49;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1923,225,0 chrXIV 436918 . C T 2098 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=16.78;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2131,237,0 chrXIV 437116 . T C 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.558;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.413;QD=23.35;ReadPosRankSum=1.709;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3549,408,0 chrXIV 437153 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=11.6434;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.04;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3570,408,0 chrXIV 437345 . T C 2678 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.2670;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.69;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2711,318,0 chrXIV 437349 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.16;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2835,309,0 chrXIV 437581 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.98;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2551,279,0 chrXIV 437599 . A G 2744 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.4534;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.88;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2777,315,0 chrXIV 437882 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=173;Dels=0.00;FS=10.151;HaplotypeScore=22.9753;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.147;QD=20.76;ReadPosRankSum=2.924;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:3,168:173:99:3591,420,0 chrXIV 437918 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.5745;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.71;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3459,396,0 chrXIV 437942 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=181;Dels=0.00;FS=8.673;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.020;QD=18.60;ReadPosRankSum=2.422;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3366,387,0 chrXIV 437945 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=188;Dels=0.00;FS=2.734;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.673;QD=18.05;ReadPosRankSum=2.371;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3393,390,0 chrXIV 438050 . G A 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.313;DP=193;Dels=0.00;FS=4.214;HaplotypeScore=13.3304;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.748;QD=22.71;ReadPosRankSum=0.273;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:4383,504,0 chrXIV 438374 . T C 1657 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.52;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1690,198,0 chrXIV 438531 . T C 870 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=15.00;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:903,105,0 chrXIV 438535 . T C 750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=-0.115;QD=12.10;ReadPosRankSum=1.617;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:1,59:62:90:783,90,0 chrXIV 438565 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=13.53;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1034,117,0 chrXIV 438570 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=15.42;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1205,135,0 chrXIV 438717 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.28;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3222,360,0 chrXIV 439449 . A T 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.896;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6438;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;MQRankSum=0.005;QD=20.03;ReadPosRankSum=4.135;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:6,139:145:99:2937,342,0 chrXIV 439683 . A G 2812 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.97;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2845,333,0 chrXIV 440313 . T C 5255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.583;DP=250;Dels=0.00;FS=6.052;HaplotypeScore=29.9393;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.571;QD=21.02;ReadPosRankSum=2.972;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:3,245:250:99:5255,609,0 chrXIV 440595 . A T 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=159;Dels=0.00;FS=2.585;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.905;QD=21.04;ReadPosRankSum=2.905;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3345,390,0 chrXIV 441038 . G A 4836.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=24.06;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4836,537,0 chrXIV 441327 . T C 978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=114;Dels=0.00;FS=5.391;HaplotypeScore=2.5795;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=-2.443;QD=8.58;ReadPosRankSum=2.266;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:1011,117,0 chrXIV 441332 . A G 1177 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=9.89;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:1210,141,0 chrXIV 441408 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=201;Dels=0.01;FS=6.176;HaplotypeScore=25.1869;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.514;QD=18.91;ReadPosRankSum=1.697;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3800,447,0 chrXIV 441435 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.4343;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.37;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4360,489,0 chrXIV 441474 . C T 4946.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.0923;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.08;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4946,558,0 chrXIV 441615 . C T 6677.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=20.9406;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.54;SB=-4.220e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:6677,744,0 chrXIV 441939 . T C 6033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.029;DP=294;Dels=0.00;FS=19.772;HaplotypeScore=18.2711;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.061;QD=20.52;ReadPosRankSum=4.151;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:6,288:294:99:6033,681,0 chrXIV 441996 . T C 6125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=298;Dels=0.00;FS=3.588;HaplotypeScore=15.9682;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.650;QD=20.55;ReadPosRankSum=1.697;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:1,296:298:99:6125,708,0 chrXIV 442805 . T C 4785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=3.075;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.476;QD=23.46;ReadPosRankSum=1.698;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4785,552,0 chrXIV 442868 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=198;Dels=0.00;FS=13.001;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=2.946;QD=20.33;ReadPosRankSum=3.345;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:4,193:198:99:4026,474,0 chrXIV 442931 . G T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.3842;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.33;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4308,474,0 chrXIV 442949 . G A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.85;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4151,471,0 chrXIV 443160 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=63.31;MQ0=0;QD=23.37;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1505,168,0 chrXIV 443191 . C T 1153 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.23;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1186,138,0 chrXIV 443303 . G A 417 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.86;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:450,51,0 chrXIV 443779 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=2.920;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.652;QD=23.32;ReadPosRankSum=2.417;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3545,399,0 chrXIV 443882 . T C 2827 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.94;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2860,327,0 chrXIV 443895 . A C 2938 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.45;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2971,348,0 chrXIV 444089 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.39;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3056,348,0 chrXIV 444424 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.48;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3850,429,0 chrXIV 444614 . A C 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.241;QD=20.69;ReadPosRankSum=1.703;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2537,288,0 chrXIV 444709 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=15.59;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1670,192,0 chrXIV 445056 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.69;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2416,288,0 chrXIV 445095 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=19.54;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2690,309,0 chrXIV 445676 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.92;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4067,453,0 chrXIV 445832 . A G 4426.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2581;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.28;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4426,501,0 chrXIV 445986 . A G 4710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=206;Dels=0.00;FS=10.159;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-2.117;QD=22.86;ReadPosRankSum=2.966;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4710,528,0 chrXIV 446017 . G A 4871.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.76;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4871,534,0 chrXIV 446044 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=3.018;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.260;QD=20.94;ReadPosRankSum=2.407;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3686,426,0 chrXIV 446331 . G A 3167 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.56;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3200,351,0 chrXIV 446337 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.65;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3192,357,0 chrXIV 446584 . G C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=13.4216;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.62;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3675,429,0 chrXIV 446677 . G C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.99;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3658,426,0 chrXIV 446682 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.83;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3688,426,0 chrXIV 446766 . T A 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=3.358;HaplotypeScore=10.3841;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.739;QD=21.69;ReadPosRankSum=1.708;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3156,354,0 chrXIV 447299 . G A 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.188;DP=242;Dels=0.00;FS=3.504;HaplotypeScore=22.9155;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.016;QD=20.00;ReadPosRankSum=-1.131;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:4839,537,0 chrXIV 447382 . G T 4805.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.56;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4805,525,0 chrXIV 448119 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.92;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2455,270,0 chrXIV 448136 . G C 2324 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.30;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2357,273,0 chrXIV 448393 . C A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.10;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3581,402,0 chrXIV 448652 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.475;QD=17.77;ReadPosRankSum=2.412;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2378,273,0 chrXIV 448900 . C G 4110.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.71;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4110,483,0 chrXIV 448975 . C G 4852.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=23.8977;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.65;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,231:235:99:4852,578,0 chrXIV 449443 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.364;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.407;QD=22.24;ReadPosRankSum=1.702;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2613,300,0 chrXIV 449521 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2829,309,0 chrXIV 449596 . A T 1975 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2008,222,0 chrXIV 449640 . A G 2638 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2671,309,0 chrXIV 450512 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=4.068;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-1.124;QD=20.28;ReadPosRankSum=1.685;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3034,357,0 chrXIV 450515 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.52;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3090,339,0 chrXIV 450550 . C G 3137 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.61;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3170,360,0 chrXIV 450577 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.96;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3453,381,0 chrXIV 450623 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.22;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3205,372,0 chrXIV 450639 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.52;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2902,333,0 chrXIV 450844 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5558;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.57;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2535,276,0 chrXIV 450995 . C A 3183 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3216,348,0 chrXIV 451091 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.53;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3312,366,0 chrXIV 451255 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.3654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3071,351,0 chrXIV 451734 . T C 2753 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.25;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2786,321,0 chrXIV 451746 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.29;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2752,306,0 chrXIV 452274 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2325,255,0 chrXIV 452401 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.19;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3991,456,0 chrXIV 452629 . T A 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=179;Dels=0.00;FS=3.035;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.597;QD=22.88;ReadPosRankSum=1.674;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4095,447,0 chrXIV 453148 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.51;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2914,330,0 chrXIV 453259 . A T 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=4.097;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.547;QD=24.64;ReadPosRankSum=1.679;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3261,357,0 chrXIV 453622 . A T 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=182;Dels=0.00;FS=2.610;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.155;QD=23.48;ReadPosRankSum=2.369;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4274,471,0 chrXIV 453766 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.429;HaplotypeScore=9.4779;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.652;QD=20.52;ReadPosRankSum=1.692;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3591,420,0 chrXIV 453937 . C T 5597.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.62;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5597,618,0 chrXIV 454094 . G A 6087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.9131;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.719;QD=23.06;ReadPosRankSum=1.194;SB=-3.368e+03 GT:AD:DP:GQ:PL 1/1:1,263:264:99:6087,669,0 chrXIV 454378 . G A 4999.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.63;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4999,543,0 chrXIV 455035 . A G 4301.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.29;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4301,495,0 chrXIV 455626 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=179;Dels=0.00;FS=3.313;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.576;QD=22.32;ReadPosRankSum=1.713;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3995,450,0 chrXIV 455686 . T C 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.688;DP=219;Dels=0.00;FS=12.037;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.339;QD=21.60;ReadPosRankSum=3.673;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:5,214:219:99:4730,552,0 chrXIV 455941 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.16;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3769,435,0 chrXIV 455959 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.01;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3342,378,0 chrXIV 456007 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=15.72;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1919,213,0 chrXIV 456009 . G A 1873 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.48;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1906,207,0 chrXIV 456086 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=174;Dels=0.00;FS=2.971;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.277;QD=20.86;ReadPosRankSum=2.421;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3629,414,0 chrXIV 456801 . A G 3706.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3706,435,0 chrXIV 456951 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.83;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4104,474,0 chrXIV 457180 . G C 2607 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.03;FS=0.000;HaplotypeScore=37.0400;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;QD=21.55;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2640,297,0 chrXIV 457263 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.69;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2189,255,0 chrXIV 457420 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.99;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1892,213,0 chrXIV 457485 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.94;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2232,249,0 chrXIV 458177 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.710;DP=154;Dels=0.00;FS=12.285;HaplotypeScore=13.0152;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-2.571;QD=22.24;ReadPosRankSum=3.617;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:5,148:154:99:3425,402,0 chrXIV 458514 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2271,264,0 chrXIV 458894 . T C 2572 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.60;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2605,303,0 chrXIV 459302 . T C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=102;Dels=0.00;FS=3.274;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.509;QD=21.24;ReadPosRankSum=1.698;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2199,255,0 chrXIV 459488 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.84;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2591,300,0 chrXIV 460238 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.188;HaplotypeScore=14.4187;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.901;QD=23.51;ReadPosRankSum=1.663;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3574,399,0 chrXIV 461002 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.642;QD=20.55;ReadPosRankSum=1.708;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2971,333,0 chrXIV 461091 . C G 3653.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.12;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3653,423,0 chrXIV 461419 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.08;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1954,216,0 chrXIV 461618 . T A 2627 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.45;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2660,297,0 chrXIV 461705 . A G 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=7.225;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.144;QD=19.24;ReadPosRankSum=2.411;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2496,291,0 chrXIV 461774 . C A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.78;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3425,378,0 chrXIV 461940 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.09;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2243,255,0 chrXIV 462303 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.35;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3052,339,0 chrXIV 462723 . A G 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=141;Dels=0.00;FS=5.539;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.079;QD=19.85;ReadPosRankSum=2.907;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:2832,330,0 chrXIV 462851 . G C 2481 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.8123;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.57;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,110:115:99:2514,285,0 chrXIV 463132 . T A 3143 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.16;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3176,357,0 chrXIV 463133 . G T 3105 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.82;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3138,354,0 chrXIV 463325 . T C 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=125;Dels=0.00;FS=3.874;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.114;QD=20.89;ReadPosRankSum=1.675;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2644,312,0 chrXIV 463775 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=10.1835;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.62;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3307,363,0 chrXIV 463992 . C G 2799 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.79;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2832,330,0 chrXIV 464000 . C G 2887 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.91;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2920,336,0 chrXIV 464558 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.71;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3984,438,0 chrXIV 464753 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=3.222;HaplotypeScore=13.5320;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.661;QD=23.19;ReadPosRankSum=1.167;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3409,381,0 chrXIV 464849 . C T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.03;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3629,417,0 chrXIV 465005 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.85;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4006,438,0 chrXIV 465288 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.697;QD=23.38;ReadPosRankSum=1.711;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3858,435,0 chrXIV 465620 . T C 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=145;Dels=0.00;FS=6.006;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.424;QD=20.32;ReadPosRankSum=2.952;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2979,351,0 chrXIV 465625 . C G 3071 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.61;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3104,363,0 chrXIV 465982 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.62;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3254,372,0 chrXIV 466168 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.072;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.317;QD=24.02;ReadPosRankSum=1.708;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3411,390,0 chrXIV 466221 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.10;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3129,348,0 chrXIV 466265 . A T 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.208;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.534;QD=22.99;ReadPosRankSum=1.644;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3609,399,0 chrXIV 466279 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=3.869;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.711;QD=21.58;ReadPosRankSum=1.710;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3367,372,0 chrXIV 466584 . G A 5893.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.7949;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.29;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5893,651,0 chrXIV 466623 . C T 5072.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.3816;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.05;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5072,558,0 chrXIV 467219 . A G 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=2.802;HaplotypeScore=8.2480;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.957;QD=21.81;ReadPosRankSum=2.395;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1996,228,0 chrXIV 467514 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.20;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3123,360,0 chrXIV 468108 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=155;Dels=0.00;FS=2.926;HaplotypeScore=11.5133;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.182;QD=22.24;ReadPosRankSum=2.418;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3447,408,0 chrXIV 468180 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.71;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2833,309,0 chrXIV 468242 . C A 2781 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.3196;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.23;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2814,324,0 chrXIV 468438 . A G 2865 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.92;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2898,330,0 chrXIV 468488 . A G 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.528;QD=23.45;ReadPosRankSum=1.698;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2425,279,0 chrXIV 468594 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.3839;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.89;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2780,303,0 chrXIV 469321 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.26;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2370,276,0 chrXIV 469625 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.19;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3105,342,0 chrXIV 469786 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.96;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1790,198,0 chrXIV 469912 . T A 506 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.87;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:539,60,0 chrXIV 469916 . G A 498 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.60;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:531,60,0 chrXIV 470301 . C T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.61;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4356,483,0 chrXIV 470587 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.08;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1910,210,0 chrXIV 470837 . T G 1927 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.41;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1960,222,0 chrXIV 470950 . T C 2186 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2219,258,0 chrXIV 471115 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.74;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1511,165,0 chrXIV 471235 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.170;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.146;QD=22.94;ReadPosRankSum=1.607;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1960,219,0 chrXIV 471595 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4499;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.05;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3550,402,0 chrXIV 471864 . A G 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8838;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-1.446;QD=16.22;ReadPosRankSum=1.696;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1606,183,0 chrXIV 471877 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=14.22;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1398,153,0 chrXIV 471885 . C G 1533 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=15.80;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1566,177,0 chrXIV 471932 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.98;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2311,255,0 chrXIV 472054 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.23;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3261,360,0 chrXIV 472094 . A G 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=3.358;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.240;QD=22.01;ReadPosRankSum=1.705;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2916,336,0 chrXIV 472311 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.70;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3234,366,0 chrXIV 472393 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=23.51;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3480,378,0 chrXIV 472417 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.60;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3062,339,0 chrXIV 472579 . G T 50.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.274;DP=160;Dels=0.00;FS=28.020;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=50.23;MQ0=2;MQRankSum=-0.411;QD=0.32;ReadPosRankSum=-4.717;SB=-6.142e+01 GT:AD:DP:GQ:PL 0/1:150,10:160:7:80,0,7 chrXIV 472584 . G C 115.13 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=2;QD=0.72;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:18:148,18,0 chrXIV 472713 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=5.097;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.345;QD=23.57;ReadPosRankSum=1.595;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3583,399,0 chrXIV 473146 . G C 1422 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1455,168,0 chrXIV 473214 . A C 1440 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1473,168,0 chrXIV 473303 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.237;QD=24.13;ReadPosRankSum=1.674;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2904,327,0 chrXIV 473603 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.69;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3861,429,0 chrXIV 473648 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.975;QD=22.86;ReadPosRankSum=1.686;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3497,411,0 chrXIV 473723 . G C 2965 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.29;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2998,348,0 chrXIV 473725 . T C 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.000;QD=22.41;ReadPosRankSum=1.679;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2946,339,0 chrXIV 473855 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.87;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2735,306,0 chrXIV 473947 . T C 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.417;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.437;QD=21.10;ReadPosRankSum=1.704;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2628,300,0 chrXIV 473948 . T C 2518 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.64;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2551,297,0 chrXIV 474098 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.851;QD=20.46;ReadPosRankSum=1.702;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2365,276,0 chrXIV 474101 . T C 2195 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.14;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2228,252,0 chrXIV 474329 . T A 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=145;Dels=0.00;FS=2.733;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=1.483;QD=21.77;ReadPosRankSum=2.348;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3189,357,0 chrXIV 474540 . T G 4548.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.19;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4548,534,0 chrXIV 474581 . C T 3817.01 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3753;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=19.78;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3817,420,0 chrXIV 474589 . C G 3372.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=3.058;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=-0.266;QD=18.43;ReadPosRankSum=-1.447;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3372,381,0 chrXIV 474591 . G T 3458.01 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=19.21;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3458,378,0 chrXIV 474885 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=23.62;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3331,369,0 chrXIV 475038 . C A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.73;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3346,381,0 chrXIV 475117 . T C 2392 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.94;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2425,276,0 chrXIV 475138 . A G 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.454;QD=19.68;ReadPosRankSum=2.389;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2414,276,0 chrXIV 475202 . C A 2593 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.52;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2626,288,0 chrXIV 475211 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.645;QD=18.45;ReadPosRankSum=1.707;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2560,297,0 chrXIV 475730 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=156;Dels=0.00;FS=4.856;HaplotypeScore=15.8771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.332;QD=21.95;ReadPosRankSum=-1.266;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3424,393,0 chrXIV 476473 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=189;Dels=0.00;FS=6.281;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.650;QD=21.17;ReadPosRankSum=2.410;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4001,453,0 chrXIV 476599 . A C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.169;QD=20.80;ReadPosRankSum=1.706;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2799,312,0 chrXIV 476731 . A G 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.388;QD=19.49;ReadPosRankSum=1.681;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1339,150,0 chrXIV 477265 . T C 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.874;QD=21.87;ReadPosRankSum=1.716;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4701,543,0 chrXIV 477287 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.116;QD=19.71;ReadPosRankSum=2.394;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4396,501,0 chrXIV 477307 . T A 4154.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.88;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4154,459,0 chrXIV 477388 . A G 5934.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.22;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,264:267:99:5934,663,0 chrXIV 477496 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.68;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:3942,453,0 chrXIV 477505 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=19.14;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4115,459,0 chrXIV 477705 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.22;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4202,465,0 chrXIV 477742 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.5028;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.78;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3484,399,0 chrXIV 477931 . C A 3104 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.01;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3137,348,0 chrXIV 478041 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=157;Dels=0.00;FS=8.893;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.721;QD=21.40;ReadPosRankSum=2.386;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3360,378,0 chrXIV 478042 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.98;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3315,387,0 chrXIV 478186 . A T 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=4.825;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=1.120;QD=25.00;ReadPosRankSum=1.711;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4100,453,0 chrXIV 478357 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=179;Dels=0.00;FS=5.106;HaplotypeScore=3.4511;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-1.277;QD=20.04;ReadPosRankSum=1.692;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,174:179:99:3588,414,0 chrXIV 478376 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.35;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2896,339,0 chrXIV 478830 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.7972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.03;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3293,381,0 chrXIV 479345 . T C 1961 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.22;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1994,228,0 chrXIV 479395 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=19.61;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1759,198,0 chrXIV 479609 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.92;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1677,192,0 chrXIV 479740 . T C 4050.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.77;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4050,468,0 chrXIV 479875 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=167;Dels=0.00;FS=6.998;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=1;MQRankSum=1.452;QD=17.53;ReadPosRankSum=2.390;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:2961,348,0 chrXIV 480070 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=21.15;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4209,465,0 chrXIV 480082 . A T 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.649;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.675;QD=20.42;ReadPosRankSum=1.714;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3880,444,0 chrXIV 480118 . G T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=19.72;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3550,408,0 chrXIV 480343 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.26;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3896,438,0 chrXIV 480401 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3703,405,0 chrXIV 480487 . A C 4109.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.5992;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.14;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4109,483,0 chrXIV 480527 . A C 4175.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.88;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4175,483,0 chrXIV 480573 . T C 3192 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.08;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3225,378,0 chrXIV 480667 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.83;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3858,417,0 chrXIV 480718 . G C 3643.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.6695;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.91;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:3643,414,0 chrXIV 480739 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.509;QD=19.75;ReadPosRankSum=0.245;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,169:174:99:3436,390,0 chrXIV 480849 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.14;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3119,360,0 chrXIV 481081 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2717,297,0 chrXIV 481402 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.94;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3127,360,0 chrXIV 481534 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;DP=165;Dels=0.00;FS=12.091;HaplotypeScore=14.8068;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.236;QD=19.83;ReadPosRankSum=2.334;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:5,159:165:99:3272,372,0 chrXIV 481545 . G A 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3487;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=1.035;QD=20.58;ReadPosRankSum=-0.472;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3223,363,0 chrXIV 481576 . T C 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.522;HaplotypeScore=11.8563;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=1.100;QD=19.10;ReadPosRankSum=1.705;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,125:130:99:2516,285,0 chrXIV 481661 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.89;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2778,312,0 chrXIV 481825 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.88;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4279,474,0 chrXIV 481845 . G A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.86;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4023,438,0 chrXIV 482145 . C T 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.226;DP=139;Dels=0.00;FS=4.207;HaplotypeScore=8.7933;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.378;QD=20.57;ReadPosRankSum=0.999;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2892,302,0 chrXIV 482230 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3384,378,0 chrXIV 482295 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.20;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3509,384,0 chrXIV 482557 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3855,438,0 chrXIV 483093 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.05;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2490,279,0 chrXIV 483098 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.47;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2416,282,0 chrXIV 483386 . G T 2222 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.78;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2255,246,0 chrXIV 483741 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.83;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2871,330,0 chrXIV 483894 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=171;Dels=0.00;FS=4.472;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.949;QD=22.63;ReadPosRankSum=0.186;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,167:171:99:3869,453,0 chrXIV 483951 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.61;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3457,387,0 chrXIV 484017 . C T 4602.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.4613;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.56;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4602,513,0 chrXIV 484190 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.6619;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.94;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4489,504,0 chrXIV 484452 . C T 4372.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.6001;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.51;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4372,501,0 chrXIV 484734 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3500,393,0 chrXIV 484786 . C A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.92;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3347,387,0 chrXIV 484851 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=193;Dels=0.00;FS=6.659;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.819;QD=20.53;ReadPosRankSum=2.424;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:3963,465,0 chrXIV 484869 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.649;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.240;QD=20.87;ReadPosRankSum=1.714;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3987,465,0 chrXIV 484904 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.232;DP=199;Dels=0.00;FS=12.806;HaplotypeScore=15.0657;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.759;QD=19.74;ReadPosRankSum=3.381;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:3929,447,0 chrXIV 485221 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.55;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3744,420,0 chrXIV 485289 . G A 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.092;DP=190;Dels=0.00;FS=4.530;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.002;QD=22.75;ReadPosRankSum=-1.984;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4323,436,0 chrXIV 485525 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.577;QD=21.08;ReadPosRankSum=1.664;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2183,246,0 chrXIV 485531 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.61;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2237,243,0 chrXIV 485657 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3331,375,0 chrXIV 485799 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.26;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3349,381,0 chrXIV 485972 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.86;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3937,459,0 chrXIV 486092 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=4.046;HaplotypeScore=11.4473;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.732;QD=21.67;ReadPosRankSum=1.690;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3575,417,0 chrXIV 486859 . T A 4447.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.71;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4447,483,0 chrXIV 487177 . T G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=3.528;HaplotypeScore=13.0766;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.102;QD=20.11;ReadPosRankSum=1.714;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3780,438,0 chrXIV 487214 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=3.034;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.640;QD=22.43;ReadPosRankSum=0.547;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4105,477,0 chrXIV 487250 . G C 4163.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.8214;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.50;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4163,474,0 chrXIV 487292 . G T 4293.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4293,474,0 chrXIV 487393 . C G 3570.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.88;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3570,408,0 chrXIV 487630 . C T 5977.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.7929;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.40;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:5977,681,0 chrXIV 487663 . T C 6782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.713;DP=331;Dels=0.00;FS=16.221;HaplotypeScore=23.0747;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.961;QD=20.49;ReadPosRankSum=4.788;SB=-3.444e+03 GT:AD:DP:GQ:PL 1/1:8,321:331:99:6782,759,0 chrXIV 487935 . C T 5113.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.8029;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.70;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5113,570,0 chrXIV 487955 . G T 5204.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.2947;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.77;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5204,582,0 chrXIV 488281 . C A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.01;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3866,429,0 chrXIV 488587 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.9585;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.05;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:3555,390,0 chrXIV 488594 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=194;Dels=0.00;FS=2.699;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-1.298;QD=16.17;ReadPosRankSum=2.347;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:3170,369,0 chrXIV 488598 . G C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=17.01;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3401,390,0 chrXIV 488794 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=22.01;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3434,384,0 chrXIV 488796 . G C 3318.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.41;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3318,387,0 chrXIV 488975 . C T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.14;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4235,471,0 chrXIV 489385 . A G 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=3.035;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.629;QD=21.67;ReadPosRankSum=1.693;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3900,450,0 chrXIV 489468 . G C 2851 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2884,330,0 chrXIV 489606 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.44;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3902,450,0 chrXIV 489631 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.94;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3817,429,0 chrXIV 489976 . G A 4544.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.95;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4544,522,0 chrXIV 490059 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=20.84;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3627,402,0 chrXIV 490118 . T A 3192 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=17.54;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3225,363,0 chrXIV 490120 . T C 3051 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=17.14;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3084,351,0 chrXIV 490124 . G C 2888 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=16.22;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2921,339,0 chrXIV 490128 . C T 3111 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=17.48;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3144,342,0 chrXIV 490203 . C A 1676 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=12.89;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:1709,201,0 chrXIV 490267 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=10.4419;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.561;QD=20.64;ReadPosRankSum=1.707;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2964,339,0 chrXIV 490355 . T A 2974 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8490;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.18;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3007,333,0 chrXIV 490408 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=153;Dels=0.00;FS=6.049;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.154;QD=22.58;ReadPosRankSum=2.417;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3455,387,0 chrXIV 490815 . C T 7413.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.67;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:0,326:327:99:7413,825,0 chrXIV 490841 . G T 7705.01 PASS AC=2;AF=1.00;AN=2;DP=348;Dels=0.01;FS=0.000;HaplotypeScore=9.9697;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.14;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:0,345:346:99:7705,843,0 chrXIV 491097 . A G 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.653;DP=201;Dels=0.00;FS=7.996;HaplotypeScore=16.5760;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.254;QD=21.30;ReadPosRankSum=3.763;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:5,194:201:99:4282,483,0 chrXIV 491107 . C T 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.256;QD=22.87;ReadPosRankSum=1.675;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4231,468,0 chrXIV 491237 . G A 5954.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=20.5992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:5954,657,0 chrXIV 491381 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.98;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3597,411,0 chrXIV 491385 . A C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=188;Dels=0.00;FS=3.760;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.350;QD=18.23;ReadPosRankSum=1.713;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,183:188:99:3427,399,0 chrXIV 491452 . T C 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=237;Dels=0.00;FS=7.877;HaplotypeScore=9.9742;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.886;QD=18.59;ReadPosRankSum=2.429;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:4407,519,0 chrXIV 491900 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4192,486,0 chrXIV 492375 . A G 6145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.923;DP=296;Dels=0.00;FS=31.202;HaplotypeScore=18.2030;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.534;QD=20.76;ReadPosRankSum=5.038;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:9,286:296:99:6145,725,0 chrXIV 492422 . C G 6359.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=24.7791;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.71;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:6359,735,0 chrXIV 492836 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.5881;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.10;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3312,363,0 chrXIV 492875 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.43;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2464,279,0 chrXIV 493068 . A T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.867;DP=22;Dels=0.00;FS=6.419;HaplotypeScore=4.6711;MLEAC=2;MLEAF=1.00;MQ=39.55;MQ0=0;MQRankSum=-0.537;QD=0.95;ReadPosRankSum=1.445;SB=-4.144e+01 GT:AD:DP:GQ:PL 1/1:6,16:22:6:52,6,0 chrXIV 493333 . T G 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.858;HaplotypeScore=4.7574;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-0.283;QD=23.92;ReadPosRankSum=1.708;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3396,381,0 chrXIV 493533 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.87;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1306,144,0 chrXIV 493553 . A G 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-0.054;QD=20.41;ReadPosRankSum=2.379;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1441,165,0 chrXIV 493715 . A G 153.06 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-2.594e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:21:186,21,0 chrXIV 493770 . G A 144.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:177,21,0 chrXIV 494028 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.875;QD=19.35;ReadPosRankSum=1.698;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1987,225,0 chrXIV 494033 . T C 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.097;QD=18.22;ReadPosRankSum=2.933;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1928,219,0 chrXIV 494596 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=171;Dels=0.00;FS=12.934;HaplotypeScore=9.7943;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.865;QD=23.01;ReadPosRankSum=2.947;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3934,456,0 chrXIV 494660 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.12;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3241,369,0 chrXIV 494676 . T A 2914 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.75;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2947,324,0 chrXIV 494733 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.95;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2079,240,0 chrXIV 494759 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.04;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2558,288,0 chrXIV 494777 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.11;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2888,336,0 chrXIV 494887 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.93;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1853,210,0 chrXIV 494926 . A G 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=3.908;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.656;QD=20.93;ReadPosRankSum=1.694;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1959,231,0 chrXIV 495060 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.42;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2387,267,0 chrXIV 495101 . A T 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.874;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.483;QD=21.24;ReadPosRankSum=1.619;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2645,294,0 chrXIV 495129 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.15;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2757,309,0 chrXIV 495255 . T A 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=112;Dels=0.00;FS=9.389;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.613;QD=20.40;ReadPosRankSum=2.793;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2318,267,0 chrXIV 495346 . C A 2539 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.15;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2572,285,0 chrXIV 495396 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.62;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2301,255,0 chrXIV 495918 . C T 5414.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.61;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5414,591,0 chrXIV 495974 . T A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.4395;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.30;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3612,402,0 chrXIV 496155 . C T 4709.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.86;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4709,519,0 chrXIV 496676 . G C 6878.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=11.9462;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.48;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,303:306:99:6878,783,0 chrXIV 496694 . T C 6753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=308;Dels=0.00;FS=2.559;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.645;QD=21.93;ReadPosRankSum=2.958;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:3,305:308:99:6753,765,0 chrXIV 496755 . G A 6570.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=15.3308;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.73;SB=-3.609e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:6570,723,0 chrXIV 496792 . T G 5708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.1325;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.030;QD=20.10;ReadPosRankSum=1.646;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:2,282:284:99:5708,663,0 chrXIV 496900 . A T 6607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=292;Dels=0.00;FS=5.165;HaplotypeScore=17.4865;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.957;QD=22.63;ReadPosRankSum=3.360;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:4,288:292:99:6607,723,0 chrXIV 497099 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.16;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3867,429,0 chrXIV 497303 . C G 4162.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.02;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,191:198:99:4162,489,0 chrXIV 497369 . G A 5262.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.2327;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.49;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5262,588,0 chrXIV 497401 . C G 5214.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.3081;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.55;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,238:242:99:5214,588,0 chrXIV 497545 . C T 5508.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.95;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5508,618,0 chrXIV 497603 . G A 4468.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.58;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4468,498,0 chrXIV 497780 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3474,396,0 chrXIV 498032 . A G 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=157;Dels=0.00;FS=7.266;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.423;QD=22.13;ReadPosRankSum=2.418;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,152:157:99:3475,402,0 chrXIV 498128 . G C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.73;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3650,426,0 chrXIV 498131 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.25;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3786,432,0 chrXIV 498149 . A G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6003;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=18.58;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3661,432,0 chrXIV 498188 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.42;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3611,426,0 chrXIV 498514 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.4724;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.76;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3230,372,0 chrXIV 498539 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=4.116;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.007;QD=20.21;ReadPosRankSum=1.705;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2680,315,0 chrXIV 498573 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=93.9097;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=18.22;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2110,231,0 chrXIV 498627 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.14;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2010,231,0 chrXIV 498724 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.75;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2534,294,0 chrXIV 499006 . T A 2360 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.69;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2393,264,0 chrXIV 499075 . A C 3185 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.59;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3218,369,0 chrXIV 499150 . T C 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=121;Dels=0.00;FS=6.086;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.720;QD=19.47;ReadPosRankSum=2.941;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:3,116:121:99:2389,276,0 chrXIV 499164 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=17.81;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2206,243,0 chrXIV 499188 . A G 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=4.901;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.993;QD=17.91;ReadPosRankSum=1.707;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2469,285,0 chrXIV 499291 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.65;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4122,468,0 chrXIV 499366 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.87;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2942,327,0 chrXIV 499402 . T C 2677 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.59;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2710,300,0 chrXIV 499607 . T C 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=141;Dels=0.00;FS=2.425;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.932;QD=16.65;ReadPosRankSum=3.346;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:4,136:141:99:2381,276,0 chrXIV 499614 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=16.77;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2565,297,0 chrXIV 499647 . T C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.356;QD=17.85;ReadPosRankSum=1.712;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3157,366,0 chrXIV 499656 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=17.45;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3244,357,0 chrXIV 499731 . T C 5452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.182;DP=246;Dels=0.00;FS=4.465;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.102;QD=22.16;ReadPosRankSum=4.505;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:7,239:246:99:5452,636,0 chrXIV 500387 . A G 2613 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.77;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2646,294,0 chrXIV 500627 . T G 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.589;QD=21.17;ReadPosRankSum=1.663;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2150,252,0 chrXIV 500652 . T A 2137 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.03;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2170,237,0 chrXIV 500701 . T C 2076 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.96;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2109,243,0 chrXIV 500711 . T C 1952 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.12;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1985,228,0 chrXIV 500767 . A G 2363 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=100.6485;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=19.53;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2396,282,0 chrXIV 501088 . G T 2217 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.95;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2250,255,0 chrXIV 501141 . T A 102.13 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=87.9522;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=0.95;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:18:135,18,0 chrXIV 501214 . A G 2907 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.37;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2940,342,0 chrXIV 501247 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.08;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2964,327,0 chrXIV 501320 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.91;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1774,195,0 chrXIV 501361 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-1.260;QD=19.41;ReadPosRankSum=1.693;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1741,201,0 chrXIV 501363 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.72;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1836,204,0 chrXIV 501440 . A T 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=1.362;QD=19.06;ReadPosRankSum=1.706;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2530,294,0 chrXIV 501452 . T C 2330 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.64;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2363,279,0 chrXIV 501463 . C A 2421 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.06;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2454,267,0 chrXIV 501590 . G C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.18;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3527,399,0 chrXIV 501828 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=211;Dels=0.00;FS=6.251;HaplotypeScore=15.8678;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.599;QD=19.78;ReadPosRankSum=2.426;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4174,474,0 chrXIV 501870 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.82;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4101,465,0 chrXIV 501910 . A T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9694;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.03;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4329,480,0 chrXIV 502322 . A G 5268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=21.8827;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.103;QD=20.26;ReadPosRankSum=1.705;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:5268,612,0 chrXIV 503261 . A G 2687 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.83;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2720,309,0 chrXIV 503608 . A T 2433 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.34;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2466,273,0 chrXIV 503612 . T C 2299 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.812;QD=20.35;ReadPosRankSum=1.671;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2332,270,0 chrXIV 503615 . C T 2350 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.36;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2383,270,0 chrXIV 503683 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.58;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2364,267,0 chrXIV 503888 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.1108;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.442;QD=22.33;ReadPosRankSum=1.649;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3729,438,0 chrXIV 504155 . G C 4539.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.47;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,197:202:99:4539,516,0 chrXIV 504614 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.59;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3800,429,0 chrXIV 504737 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3509,402,0 chrXIV 504830 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.0888;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.87;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3609,402,0 chrXIV 505410 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.01;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3529,402,0 chrXIV 506324 . G A 4420.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.3309;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.10;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4420,489,0 chrXIV 506768 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.43;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2769,303,0 chrXIV 506905 . T C 1758 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=14.41;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1791,201,0 chrXIV 506906 . A C 1741 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=7.626;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=0.151;QD=14.27;ReadPosRankSum=2.409;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:1774,201,0 chrXIV 506908 . C G 1718 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=14.08;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1751,201,0 chrXIV 506920 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=14.36;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2015,222,0 chrXIV 507053 . T G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=6.940;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=1.867;QD=19.91;ReadPosRankSum=2.377;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2741,315,0 chrXIV 507058 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.54;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2749,303,0 chrXIV 507345 . T A 1974 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=101;Dels=0.00;FS=7.077;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;MQRankSum=-1.767;QD=19.54;ReadPosRankSum=2.255;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2007,231,0 chrXIV 507351 . C T 1944 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=6.6312;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=19.25;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1977,219,0 chrXIV 507355 . T A 1759 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.762;HaplotypeScore=6.5330;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;MQRankSum=-1.538;QD=16.44;ReadPosRankSum=1.570;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1792,204,0 chrXIV 507430 . G T 1429 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=85;Dels=0.00;FS=3.612;HaplotypeScore=4.5520;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;MQRankSum=-0.469;QD=16.81;ReadPosRankSum=1.528;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1462,159,0 chrXIV 507431 . A T 1416 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5520;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;MQRankSum=-1.247;QD=16.47;ReadPosRankSum=2.801;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1449,159,0 chrXIV 507432 . A T 1441 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.175;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9747;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-0.826;QD=16.56;ReadPosRankSum=2.710;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1474,159,0 chrXIV 507433 . A C 1350 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.651;DP=87;Dels=0.00;FS=3.496;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-1.732;QD=15.52;ReadPosRankSum=1.691;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1383,159,0 chrXIV 507505 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.0386;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.958;QD=21.66;ReadPosRankSum=2.417;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3292,381,0 chrXIV 507568 . A T 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=127;Dels=0.00;FS=15.620;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=-0.992;QD=19.87;ReadPosRankSum=2.850;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2556,279,0 chrXIV 507570 . G T 2465 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.5969;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=19.56;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2498,276,0 chrXIV 507599 . A T 2300 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.85;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2333,264,0 chrXIV 507677 . T A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.83;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4028,444,0 chrXIV 507735 . A T 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5150;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.018;QD=21.96;ReadPosRankSum=1.714;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4217,480,0 chrXIV 508094 . C A 5372.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=16.8861;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.56;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5372,585,0 chrXIV 508222 . G A 4962.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.6846;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.35;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4962,567,0 chrXIV 508306 . T C 3962.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.53;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3962,459,0 chrXIV 508524 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.79;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1530,174,0 chrXIV 508645 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.94;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1349,156,0 chrXIV 508667 . A G 1240 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.67;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1273,144,0 chrXIV 508743 . T C 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-1.656;QD=20.46;ReadPosRankSum=1.694;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1895,216,0 chrXIV 508757 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=19.78;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1853,210,0 chrXIV 508768 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.26;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1724,204,0 chrXIV 509173 . C A 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.320;DP=129;Dels=0.00;FS=3.522;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.275;QD=19.84;ReadPosRankSum=-0.137;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2593,269,0 chrXIV 509415 . G T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.25;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3790,420,0 chrXIV 509478 . C A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.8427;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.04;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3295,366,0 chrXIV 509580 . G T 3164 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.82;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3197,372,0 chrXIV 510203 . A G 2414 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=20.12;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2447,276,0 chrXIV 510274 . C A 1682 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=15.57;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1715,192,0 chrXIV 510300 . T C 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=4.058;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;MQRankSum=-1.237;QD=11.26;ReadPosRankSum=1.691;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:990,114,0 chrXIV 510358 . G A 1098 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=14.45;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1131,126,0 chrXIV 510362 . T A 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.7831;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=0.591;QD=13.41;ReadPosRankSum=-0.754;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1173,135,0 chrXIV 510401 . A T 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=1.080;QD=19.64;ReadPosRankSum=1.286;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2036,228,0 chrXIV 510459 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=23.40;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2701,294,0 chrXIV 510479 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=10.391;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=1.151;QD=22.20;ReadPosRankSum=2.404;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2431,276,0 chrXIV 510523 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.26;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2499,291,0 chrXIV 510648 . C A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.09;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3463,381,0 chrXIV 510728 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.21;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3801,420,0 chrXIV 510803 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=144;Dels=0.00;FS=3.492;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.254;QD=22.45;ReadPosRankSum=1.684;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3269,378,0 chrXIV 510838 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.1168;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.035;QD=22.13;ReadPosRankSum=1.710;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3430,399,0 chrXIV 511046 . G C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=4.021;HaplotypeScore=5.7961;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.710;QD=19.45;ReadPosRankSum=1.536;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3164,369,0 chrXIV 511331 . C G 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.245;DP=125;Dels=0.00;FS=3.752;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.331;QD=20.09;ReadPosRankSum=-1.618;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,120:125:99:2544,281,0 chrXIV 511838 . T C 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.771;QD=23.25;ReadPosRankSum=1.715;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4883,561,0 chrXIV 511916 . C T 5264.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=23.3228;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.56;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5264,600,0 chrXIV 512285 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.02;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2576,288,0 chrXIV 512400 . C T 1282 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1315,144,0 chrXIV 512455 . G A 278 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=16.35;SB=-7.600e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:311,36,0 chrXIV 512526 . A G 629 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=13.38;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:75:662,75,0 chrXIV 512530 . A T 735 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=15.31;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:84:768,84,0 chrXIV 512534 . A G 700 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=13.21;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,49:53:84:733,84,0 chrXIV 512617 . T C 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.899;QD=22.74;ReadPosRankSum=2.401;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2307,270,0 chrXIV 512905 . C T 5183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=253;Dels=0.00;FS=4.346;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.199;QD=20.49;ReadPosRankSum=1.267;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5183,594,0 chrXIV 513106 . A G 4320.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.39;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4320,495,0 chrXIV 513243 . T C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=4.030;HaplotypeScore=10.6473;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.636;QD=21.17;ReadPosRankSum=1.700;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4572,519,0 chrXIV 513525 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.390;QD=20.84;ReadPosRankSum=1.687;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3222,366,0 chrXIV 513783 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3053,336,0 chrXIV 513927 . A G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.19;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3661,414,0 chrXIV 514279 . T A 3144 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2093;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.12;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3177,357,0 chrXIV 514927 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2820,318,0 chrXIV 515028 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=160;Dels=0.00;FS=3.952;HaplotypeScore=12.9020;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.686;QD=22.28;ReadPosRankSum=1.710;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3564,387,0 chrXIV 515081 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4089,450,0 chrXIV 515393 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=6.5010;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.44;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2522,288,0 chrXIV 515474 . A T 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.01;FS=2.611;HaplotypeScore=16.7086;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.091;QD=20.62;ReadPosRankSum=2.389;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2549,276,0 chrXIV 515478 . C A 2458 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=10.8909;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.66;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2491,273,0 chrXIV 515537 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.00;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1534,177,0 chrXIV 515602 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.32;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1293,144,0 chrXIV 515604 . T A 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.148;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.812;QD=19.62;ReadPosRankSum=1.678;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1289,147,0 chrXIV 515908 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.0025;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.89;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2780,306,0 chrXIV 515949 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.52;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4242,471,0 chrXIV 516034 . A G 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=1.351;QD=22.00;ReadPosRankSum=1.666;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4621,525,0 chrXIV 516129 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3206,351,0 chrXIV 516367 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.59;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3609,396,0 chrXIV 516484 . G A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.14;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4514,519,0 chrXIV 516536 . C T 4046.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.52;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4046,441,0 chrXIV 516539 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.16;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3894,438,0 chrXIV 516881 . A G 638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=40;Dels=0.00;FS=6.767;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.730;QD=15.95;ReadPosRankSum=1.641;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,37:40:78:671,78,0 chrXIV 516960 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1394,159,0 chrXIV 517017 . T A 824 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:857,99,0 chrXIV 517069 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.69;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1644,186,0 chrXIV 517606 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.820;QD=22.26;ReadPosRankSum=1.618;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3383,381,0 chrXIV 517634 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3137;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.85;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3343,378,0 chrXIV 517797 . T G 1808 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.65;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1841,213,0 chrXIV 517809 . T A 1513 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.23;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1546,174,0 chrXIV 518162 . A G 4330.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.79;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4330,504,0 chrXIV 518600 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=209;Dels=0.00;FS=2.973;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.541;QD=18.58;ReadPosRankSum=2.402;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:3883,450,0 chrXIV 518602 . G T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.58;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3940,435,0 chrXIV 518686 . G A 5115.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=14.1676;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.60;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:5115,561,0 chrXIV 518771 . G A 4944.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.37;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4944,546,0 chrXIV 519039 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=21.40;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2644,291,0 chrXIV 519045 . A G 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;MQRankSum=-1.732;QD=19.45;ReadPosRankSum=1.703;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2386,279,0 chrXIV 519058 . T C 2202 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=18.66;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2235,264,0 chrXIV 519064 . A G 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;MQRankSum=0.532;QD=18.14;ReadPosRankSum=2.366;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2173,249,0 chrXIV 519077 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=18.40;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1836,204,0 chrXIV 519088 . C T 1650 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=17.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1683,186,0 chrXIV 523434 . G A 844 filter AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=12.8726;MLEAC=2;MLEAF=1.00;MQ=17.38;MQ0=23;QD=2.85;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:3,293:296:99:877,102,0 chrXIV 523441 . G T 649 filter AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.71;MQ0=26;QD=2.37;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:3,268:274:75:682,75,0 chrXIV 523644 . A G 39.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=0;QD=4.44;SB=-6.947e+01 GT:AD:DP:GQ:PL 1/1:0,8:9:9:72,9,0 chrXIV 523649 . A G 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.086;DP=23;Dels=0.00;FS=10.447;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;MQRankSum=-2.298;QD=1.78;ReadPosRankSum=1.904;SB=-9.547e+01 GT:AD:DP:GQ:PL 1/1:11,11:23:9:73,9,0 chrXIV 523665 . C T 338 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=2;QD=8.45;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:42:371,42,0 chrXIV 523677 . C T 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;DP=84;Dels=0.00;FS=8.418;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=22.27;MQ0=30;MQRankSum=0.497;QD=0.35;ReadPosRankSum=0.177;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,21:84:59:59,0,461 chrXIV 523680 . A T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=96;Dels=0.00;FS=8.211;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=33;MQRankSum=2.023;QD=0.27;ReadPosRankSum=0.934;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,22:96:56:56,0,462 chrXIV 523848 . A C 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.778;DP=133;Dels=0.00;FS=1.109;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=16.65;MQ0=37;MQRankSum=4.407;QD=1.25;ReadPosRankSum=-3.994;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:115,18:133:99:196,0,331 chrXIV 523854 . G A 201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=138;Dels=0.00;FS=26.395;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=18.41;MQ0=35;MQRankSum=4.596;QD=1.46;ReadPosRankSum=-4.662;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:117,21:138:99:231,0,367 chrXIV 523870 . A G 444.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.924;DP=145;Dels=0.00;FS=110.849;HaplotypeScore=25.4696;MLEAC=1;MLEAF=0.500;MQ=22.03;MQ0=27;MQRankSum=3.594;QD=3.06;ReadPosRankSum=-5.014;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,35:145:99:474,0,628 chrXIV 523872 . C T 505.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.238;DP=142;Dels=0.00;FS=88.059;HaplotypeScore=27.8356;MLEAC=1;MLEAF=0.500;MQ=22.88;MQ0=24;MQRankSum=3.696;QD=3.56;ReadPosRankSum=-5.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,37:142:99:535,0,596 chrXIV 523875 . G A 681.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.640;DP=144;Dels=0.00;FS=99.165;HaplotypeScore=27.7809;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=20;MQRankSum=3.515;QD=4.73;ReadPosRankSum=-4.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,40:144:99:711,0,601 chrXIV 523876 . T A 578.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.142;DP=147;Dels=0.00;FS=11.340;HaplotypeScore=26.2035;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=21;MQRankSum=0.859;QD=3.93;ReadPosRankSum=2.464;SB=-3.390e+02 GT:AD:DP:GQ:PL 0/1:82,65:147:99:608,0,672 chrXIV 523924 . C T 338.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.630;DP=340;Dels=0.00;FS=1.791;HaplotypeScore=57.4595;MLEAC=1;MLEAF=0.500;MQ=34.00;MQ0=4;MQRankSum=-4.155;QD=0.99;ReadPosRankSum=-2.674;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:279,61:340:99:368,0,5418 chrXIV 523953 . A G 8308.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.324;DP=456;Dels=0.00;FS=14.813;HaplotypeScore=13.1828;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=50;MQRankSum=7.651;QD=18.22;ReadPosRankSum=-1.337;SB=-4.112e+03 GT:AD:DP:GQ:PL 1/1:36,418:456:99:8308,427,0 chrXIV 524029 . G A 240.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;DP=335;Dels=0.00;FS=12.210;HaplotypeScore=14.0376;MLEAC=1;MLEAF=0.500;MQ=12.15;MQ0=110;MQRankSum=3.731;QD=0.72;ReadPosRankSum=-2.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,85:335:99:270,0,177 chrXIV 524256 . C T 709.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.477;DP=427;Dels=0.00;FS=4.973;HaplotypeScore=17.4980;MLEAC=1;MLEAF=0.500;MQ=15.41;MQ0=74;MQRankSum=-0.678;QD=1.66;ReadPosRankSum=-0.316;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:315,108:427:99:739,0,3311 chrXIV 525014 . T A 12.30 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.40;MQ0=24;MQRankSum=1.026;QD=0.44;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,11:28:19:42,0,19 chrXIV 525065 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.023;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9387;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=3;MQRankSum=2.359;QD=0.40;ReadPosRankSum=1.168;SB=-8.576e+01 GT:AD:DP:GQ:PL 1/1:52,5:57:6:54,6,0 chrXIV 525066 . C G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.126;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9387;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=3;MQRankSum=2.318;QD=0.34;ReadPosRankSum=-2.097;SB=-9.176e+01 GT:AD:DP:GQ:PL 1/1:54,5:59:6:51,6,0 chrXIV 525090 . C A 105.26 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=1.55;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,68:68:15:138,15,0 chrXIV 525096 . A G 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=1.54;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,62:62:15:128,15,0 chrXIV 525101 . C T 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=1.79;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,55:56:15:133,15,0 chrXIV 525102 . G A 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=1.70;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,56:56:15:128,15,0 chrXIV 525106 . C T 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=1.79;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,56:56:15:133,15,0 chrXIV 525249 . C A 1454 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=13.98;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1487,162,0 chrXIV 525274 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.142;DP=100;Dels=0.01;FS=6.930;HaplotypeScore=111.0878;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=1.174;QD=16.39;ReadPosRankSum=2.740;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:5,94:99:99:1672,192,0 chrXIV 525379 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=180;Dels=0.01;FS=5.252;HaplotypeScore=24.8255;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;MQRankSum=1.049;QD=21.08;ReadPosRankSum=3.333;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3794,432,0 chrXIV 525472 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.44;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3184,354,0 chrXIV 525522 . T C 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=125;Dels=0.00;FS=3.997;HaplotypeScore=14.4716;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.437;QD=20.96;ReadPosRankSum=1.648;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2653,306,0 chrXIV 525575 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=158;Dels=0.00;FS=2.825;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.290;QD=22.28;ReadPosRankSum=2.387;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3520,396,0 chrXIV 525750 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=2.938;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-2.224;QD=20.33;ReadPosRankSum=2.421;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3558,408,0 chrXIV 525761 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.2099;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.791;QD=20.50;ReadPosRankSum=1.694;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3772,435,0 chrXIV 525857 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5092;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.79;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4017,465,0 chrXIV 525866 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.58;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:3877,432,0 chrXIV 525960 . T C 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=3.369;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.103;QD=21.30;ReadPosRankSum=1.663;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4324,492,0 chrXIV 526397 . G A 6799.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=10.6213;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.29;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:6799,756,0 chrXIV 526433 . C T 5709.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=22.1380;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.63;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,261:264:99:5709,636,0 chrXIV 526616 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.17;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3692,420,0 chrXIV 526658 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.98;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4279,480,0 chrXIV 526742 . A T 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=3.172;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.351;QD=18.81;ReadPosRankSum=1.660;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3593,393,0 chrXIV 526756 . A T 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=193;Dels=0.00;FS=3.362;HaplotypeScore=5.6704;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.081;QD=18.10;ReadPosRankSum=1.714;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:3494,381,0 chrXIV 526838 . G A 4478.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.8070;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.06;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4478,495,0 chrXIV 526877 . T G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=200;Dels=0.00;FS=3.702;HaplotypeScore=11.6583;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.149;QD=20.42;ReadPosRankSum=1.679;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,196:200:99:4084,471,0 chrXIV 526920 . C T 4598.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.8414;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.34;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4598,504,0 chrXIV 527042 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=218;Dels=0.00;FS=8.157;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-2.580;QD=18.50;ReadPosRankSum=3.404;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:4,212:218:99:4032,468,0 chrXIV 527048 . G T 4156.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.55;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:4156,474,0 chrXIV 527087 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.22;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4063,477,0 chrXIV 527207 . C A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.23;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3804,426,0 chrXIV 527225 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.1791;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.74;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3908,447,0 chrXIV 527330 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.960;QD=21.02;ReadPosRankSum=1.711;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3490,402,0 chrXIV 527510 . G A 498 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=7.0476;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=3.23;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:60:531,60,0 chrXIV 527731 . A T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.7144;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.95;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3970,441,0 chrXIV 527794 . C T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.05;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4013,450,0 chrXIV 528195 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4461,489,0 chrXIV 528506 . C T 5317.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.42;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5317,579,0 chrXIV 528563 . A G 5117.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.68;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5117,594,0 chrXIV 528641 . C T 5206.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.1799;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.04;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5206,564,0 chrXIV 528971 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.84;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3975,444,0 chrXIV 528992 . C A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.32;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3625,417,0 chrXIV 529073 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=19.46;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2855,312,0 chrXIV 529082 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=20.21;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2862,318,0 chrXIV 529112 . A G 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;MQRankSum=-0.407;QD=17.89;ReadPosRankSum=2.383;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2681,306,0 chrXIV 529118 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;MQRankSum=-1.581;QD=18.68;ReadPosRankSum=1.607;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2648,303,0 chrXIV 529136 . A G 2726 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=19.33;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2759,318,0 chrXIV 529155 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=21.48;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3502,390,0 chrXIV 529514 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=10.1301;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=20.62;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3897,447,0 chrXIV 529520 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0188;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;MQRankSum=0.968;QD=21.05;ReadPosRankSum=1.644;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3999,453,0 chrXIV 529673 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4927;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.70;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2615,294,0 chrXIV 530418 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.72;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4476,507,0 chrXIV 530605 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.46;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2641,303,0 chrXIV 530856 . A G 5786.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=14.9544;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.96;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5786,666,0 chrXIV 531012 . T C 7488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=332;Dels=0.00;FS=5.854;HaplotypeScore=25.3013;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.949;QD=22.55;ReadPosRankSum=2.979;SB=-3.702e+03 GT:AD:DP:GQ:PL 1/1:3,329:332:99:7488,855,0 chrXIV 531087 . A G 7607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=351;Dels=0.00;FS=9.070;HaplotypeScore=30.6855;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.292;QD=21.67;ReadPosRankSum=3.402;SB=-4.349e+03 GT:AD:DP:GQ:PL 1/1:4,346:351:99:7607,861,0 chrXIV 531505 . G T 4353.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.21;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,191:196:99:4353,477,0 chrXIV 531656 . G A 6075.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=23.0566;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.42;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6075,672,0 chrXIV 532165 . T C 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=4.819;HaplotypeScore=8.8225;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.428;QD=21.32;ReadPosRankSum=1.656;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1994,225,0 chrXIV 532531 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1100,123,0 chrXIV 532539 . C T 1016 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.04;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.81;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1049,117,0 chrXIV 532649 . A C 1397 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.14;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1430,165,0 chrXIV 532670 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.89;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1982,219,0 chrXIV 532790 . T A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.95;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3489,399,0 chrXIV 532945 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.20;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3758,411,0 chrXIV 533288 . T C 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=125;Dels=0.00;FS=3.027;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.823;QD=23.30;ReadPosRankSum=2.410;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2946,336,0 chrXIV 533519 . A G 3000 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.58;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3033,354,0 chrXIV 533533 . A G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.617;QD=19.86;ReadPosRankSum=-0.237;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2932,345,0 chrXIV 533705 . T A 2411 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.53;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2444,273,0 chrXIV 533912 . A G 601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.174;QD=19.39;ReadPosRankSum=1.509;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:72:634,72,0 chrXIV 533926 . T C 621 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:654,75,0 chrXIV 534041 . T A 505 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:60:538,60,0 chrXIV 534071 . T A 602 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.24;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:75:635,75,0 chrXIV 534210 . T C 2796 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.31;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2829,318,0 chrXIV 534316 . T C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.814;QD=22.79;ReadPosRankSum=1.673;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2700,303,0 chrXIV 534658 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.70;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3165,345,0 chrXIV 534766 . T C 2547 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.05;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2580,300,0 chrXIV 534831 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.83;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1976,216,0 chrXIV 535131 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.578;QD=20.17;ReadPosRankSum=1.655;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1848,216,0 chrXIV 535369 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=4.465;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.239;QD=21.51;ReadPosRankSum=1.704;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2743,321,0 chrXIV 535410 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3184,345,0 chrXIV 535870 . G T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3282,360,0 chrXIV 536139 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6437;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.38;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4465,501,0 chrXIV 536463 . A T 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=161;Dels=0.00;FS=2.977;HaplotypeScore=11.2512;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.420;QD=23.40;ReadPosRankSum=2.404;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3767,417,0 chrXIV 536514 . G T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.93;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3509,393,0 chrXIV 536751 . C G 2261 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.74;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2294,261,0 chrXIV 536763 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.32;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2144,234,0 chrXIV 536830 . G T 2655 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.07;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2688,297,0 chrXIV 536942 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=170;Dels=0.00;FS=2.562;HaplotypeScore=11.8946;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.503;QD=21.90;ReadPosRankSum=2.719;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3723,429,0 chrXIV 537042 . A G 2972 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.85;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3005,342,0 chrXIV 537303 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.17;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4032,459,0 chrXIV 537549 . C T 5075.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=20.71;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5075,558,0 chrXIV 537552 . T G 4897.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=2.4516;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=19.67;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:4897,567,0 chrXIV 537637 . A G 5886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=264;Dels=0.00;FS=3.023;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.023;QD=22.30;ReadPosRankSum=2.357;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:2,262:264:99:5886,681,0 chrXIV 537756 . A G 5774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=264;Dels=0.00;FS=3.497;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.682;QD=21.87;ReadPosRankSum=1.719;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:1,263:264:99:5774,666,0 chrXIV 537771 . A G 5110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=271;Dels=0.00;FS=11.088;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-0.517;QD=18.86;ReadPosRankSum=2.959;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:3,265:271:99:5110,594,0 chrXIV 537783 . T G 4978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=278;Dels=0.00;FS=5.562;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.657;QD=17.91;ReadPosRankSum=2.910;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:3,275:278:99:4978,561,0 chrXIV 537950 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=20.37;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:4725,537,0 chrXIV 537981 . A C 5522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=269;Dels=0.00;FS=5.349;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.823;QD=20.53;ReadPosRankSum=2.921;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:3,264:269:99:5522,645,0 chrXIV 538119 . G T 2713 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=13.91;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:2746,318,0 chrXIV 538122 . A G 2720 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=200;Dels=0.00;FS=3.025;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=0;MQRankSum=-1.701;QD=13.60;ReadPosRankSum=2.425;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:2753,321,0 chrXIV 538129 . A G 2648 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=206;Dels=0.00;FS=3.053;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;MQRankSum=-1.026;QD=12.85;ReadPosRankSum=1.698;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:2681,309,0 chrXIV 538142 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=188.7851;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=12.47;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:2627,300,0 chrXIV 538315 . G A 4772.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.74;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4772,522,0 chrXIV 538564 . C T 4518.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.93;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4518,507,0 chrXIV 538640 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=191;Dels=0.00;FS=12.991;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.727;QD=21.89;ReadPosRankSum=2.899;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:3,186:191:99:4181,492,0 chrXIV 539561 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.2996;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.49;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2898,336,0 chrXIV 539576 . A T 2953 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.37;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2986,327,0 chrXIV 539639 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=17.92;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2577,300,0 chrXIV 539903 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.11;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2081,231,0 chrXIV 540188 . T A 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=211;Dels=0.00;FS=6.865;HaplotypeScore=13.7776;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.541;QD=23.64;ReadPosRankSum=2.380;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4988,549,0 chrXIV 540229 . T C 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.226;QD=22.05;ReadPosRankSum=1.715;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4587,528,0 chrXIV 540526 . C G 3190 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.55;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3223,369,0 chrXIV 540589 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=117;Dels=0.00;FS=2.748;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.251;QD=19.91;ReadPosRankSum=2.387;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2363,276,0 chrXIV 540985 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.99;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2052,237,0 chrXIV 541168 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=151;Dels=0.00;FS=8.065;HaplotypeScore=7.0890;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.620;QD=22.76;ReadPosRankSum=3.355;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3437,393,0 chrXIV 541746 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.81;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4329,480,0 chrXIV 541750 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=215;Dels=0.00;FS=2.467;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-1.418;QD=19.46;ReadPosRankSum=2.958;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:4183,474,0 chrXIV 542408 . G C 4614.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.96;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4614,528,0 chrXIV 542443 . C T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.04;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4055,468,0 chrXIV 542549 . T C 3940.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.80;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3940,462,0 chrXIV 542570 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=17.50;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:3867,426,0 chrXIV 542576 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=228;Dels=0.00;FS=9.122;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-0.004;QD=15.60;ReadPosRankSum=3.376;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:4,224:228:99:3557,402,0 chrXIV 542690 . G C 3677.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.88;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3677,420,0 chrXIV 542931 . T C 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=183;Dels=0.00;FS=3.004;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.092;QD=22.45;ReadPosRankSum=2.422;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4109,465,0 chrXIV 543016 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.5863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.99;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3838,426,0 chrXIV 543829 . A T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.34;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3571,399,0 chrXIV 544459 . G T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.09;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3301,360,0 chrXIV 544998 . T C 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=183;Dels=0.00;FS=9.400;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.668;QD=20.86;ReadPosRankSum=2.409;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3818,447,0 chrXIV 545141 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=172;Dels=0.00;FS=4.018;HaplotypeScore=12.8732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.277;QD=21.06;ReadPosRankSum=1.712;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3623,423,0 chrXIV 545184 . A G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=126;Dels=0.00;FS=2.971;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=21.18;ReadPosRankSum=2.389;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,120:126:99:2702,306,0 chrXIV 545273 . T C 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=123;Dels=0.00;FS=8.229;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.730;QD=21.80;ReadPosRankSum=2.410;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2714,309,0 chrXIV 545565 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.9005;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.90;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4206,474,0 chrXIV 545697 . T C 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.210;QD=24.02;ReadPosRankSum=1.592;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4756,537,0 chrXIV 545903 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=18.1719;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.36;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4047,444,0 chrXIV 546137 . A C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.20;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3619,411,0 chrXIV 546186 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.69;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3557,405,0 chrXIV 546253 . T C 5468.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5468,630,0 chrXIV 546460 . C A 5012.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.18;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5012,552,0 chrXIV 546519 . T G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=143;Dels=0.00;FS=3.301;HaplotypeScore=15.5293;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.685;QD=20.12;ReadPosRankSum=1.707;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,138:143:99:2910,336,0 chrXIV 546598 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0414;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=21.22;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2558,294,0 chrXIV 546700 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.407;QD=19.74;ReadPosRankSum=1.702;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2303,264,0 chrXIV 546728 . A T 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=76;Dels=0.00;FS=2.372;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;MQRankSum=-3.129;QD=19.13;ReadPosRankSum=3.268;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:4,72:76:99:1487,159,0 chrXIV 547001 . A G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;DP=22;Dels=0.00;FS=6.422;HaplotypeScore=8.9702;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=5;MQRankSum=-0.342;QD=1.64;ReadPosRankSum=2.196;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,7:22:66:66,0,79 chrXIV 547005 . G A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.9577;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=5;MQRankSum=2.331;QD=0.91;ReadPosRankSum=1.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,3:22:50:50,0,93 chrXIV 547017 . A G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;DP=21;Dels=0.00;FS=6.422;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=17.46;MQ0=4;MQRankSum=-0.244;QD=1.71;ReadPosRankSum=-2.684;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,7:21:66:66,0,76 chrXIV 547019 . G A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.098;DP=21;Dels=0.00;FS=6.422;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=17.46;MQ0=4;MQRankSum=-0.634;QD=1.95;ReadPosRankSum=-2.879;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,7:21:71:71,0,77 chrXIV 547040 . C T 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=3.8356;MLEAC=1;MLEAF=0.500;MQ=18.96;MQ0=3;MQRankSum=-0.231;QD=1.32;ReadPosRankSum=-2.855;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,4:16:51:51,0,79 chrXIV 547046 . A C 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=19.82;MQ0=2;MQRankSum=2.166;QD=2.33;ReadPosRankSum=-1.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,3:12:33:58,0,33 chrXIV 547211 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=16.33;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1993,225,0 chrXIV 547212 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=15.55;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1930,225,0 chrXIV 547250 . T C 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;MQRankSum=-1.593;QD=16.65;ReadPosRankSum=1.686;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2514,297,0 chrXIV 547272 . C A 2873 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=17.41;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:2906,321,0 chrXIV 547365 . C G 2211 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.10;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2244,264,0 chrXIV 547408 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.12;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2689,306,0 chrXIV 547464 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=163;Dels=0.00;FS=9.170;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.711;QD=19.71;ReadPosRankSum=3.318;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:4,157:163:99:3246,366,0 chrXIV 547721 . A C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.092;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.385;QD=21.09;ReadPosRankSum=0.405;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3648,395,0 chrXIV 547745 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=1.191;QD=19.40;ReadPosRankSum=1.611;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3196,347,0 chrXIV 547766 . A T 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=116;Dels=0.00;FS=6.135;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.337;QD=20.26;ReadPosRankSum=2.386;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2383,264,0 chrXIV 548403 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.202;QD=24.08;ReadPosRankSum=1.691;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4094,456,0 chrXIV 548510 . T A 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=199;Dels=0.00;FS=3.031;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.561;QD=21.06;ReadPosRankSum=2.400;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4190,465,0 chrXIV 548516 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=206;Dels=0.00;FS=6.014;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-1.302;QD=19.27;ReadPosRankSum=2.965;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:3,200:206:99:3970,459,0 chrXIV 548764 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.97;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4362,495,0 chrXIV 548771 . T C 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.686;QD=18.14;ReadPosRankSum=1.647;SB=-3.048e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:4445,507,0 chrXIV 549448 . A C 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=104;Dels=0.00;FS=3.596;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.429;QD=22.50;ReadPosRankSum=1.698;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2373,273,0 chrXIV 549924 . G T 2665 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.82;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2698,309,0 chrXIV 550172 . C T 2093 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2126,240,0 chrXIV 551027 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.54;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2315,252,0 chrXIV 552035 . C G 4164.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.15;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4164,474,0 chrXIV 552668 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=185;Dels=0.00;FS=2.960;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.128;QD=20.01;ReadPosRankSum=2.383;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3702,423,0 chrXIV 552682 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.49;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3647,414,0 chrXIV 553254 . C A 5278.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.0629;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.32;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5278,588,0 chrXIV 554067 . A G 3103 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.0495;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.83;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3136,363,0 chrXIV 554217 . T C 2488 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.73;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2521,288,0 chrXIV 554844 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2591,288,0 chrXIV 555245 . T C 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=197;Dels=0.00;FS=2.734;HaplotypeScore=16.8036;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.307;QD=22.47;ReadPosRankSum=2.425;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4426,507,0 chrXIV 555551 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=183;Dels=0.00;FS=3.932;HaplotypeScore=11.0758;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.085;QD=22.17;ReadPosRankSum=1.694;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4057,468,0 chrXIV 555641 . T C 3175 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.6893;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.36;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3208,369,0 chrXIV 555698 . T C 2426 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0237;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.56;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2459,282,0 chrXIV 555848 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=144;Dels=0.00;FS=6.237;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.951;QD=22.34;ReadPosRankSum=2.381;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3250,366,0 chrXIV 556301 . C T 4412.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.3378;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.24;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4412,483,0 chrXIV 556380 . T C 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.573;DP=198;Dels=0.00;FS=4.878;HaplotypeScore=21.3182;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.253;QD=22.84;ReadPosRankSum=3.684;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:5,193:198:99:4522,522,0 chrXIV 556862 . A C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=153;Dels=0.00;FS=17.333;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.593;QD=22.67;ReadPosRankSum=3.367;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:4,148:153:99:3469,402,0 chrXIV 557053 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=172;Dels=0.00;FS=5.572;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.594;QD=22.08;ReadPosRankSum=2.947;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3798,444,0 chrXIV 557437 . A G 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=3.206;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.528;QD=21.53;ReadPosRankSum=1.681;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2983,357,0 chrXIV 557535 . C T 3997.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.79;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3997,441,0 chrXIV 557562 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=8.6090;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.974;QD=21.92;ReadPosRankSum=1.671;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3727,420,0 chrXIV 557625 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4553;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.04;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2546,285,0 chrXIV 557698 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.27;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2826,315,0 chrXIV 557859 . T C 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.977;DP=92;Dels=0.00;FS=5.336;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.163;QD=22.55;ReadPosRankSum=3.360;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:4,88:92:99:2108,240,0 chrXIV 558085 . G A 7490.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=22.9031;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.36;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,331:335:99:7490,867,0 chrXIV 558243 . A G 7082.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=21.1875;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.79;SB=-3.854e+03 GT:AD:DP:GQ:PL 1/1:0,325:325:99:7082,813,0 chrXIV 558811 . G A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.9520;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.87;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4243,489,0 chrXIV 559022 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.135;DP=168;Dels=0.01;FS=5.070;HaplotypeScore=14.1991;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.832;QD=21.41;ReadPosRankSum=3.407;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3597,414,0 chrXIV 559152 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2185,243,0 chrXIV 559202 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.18;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1719,189,0 chrXIV 559393 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4377;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.73;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,170:175:99:3978,465,0 chrXIV 559471 . G C 2632 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.03;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,141:146:99:2665,303,0 chrXIV 559472 . T C 2589 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.10;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2622,303,0 chrXIV 559524 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.47;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3658,408,0 chrXIV 559694 . G T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6921;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=25.06;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4009,447,0 chrXIV 559885 . C T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.9246;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.83;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4235,483,0 chrXIV 559919 . C G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.56;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3814,435,0 chrXIV 559921 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.49;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4097,450,0 chrXIV 560119 . A G 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=223;Dels=0.00;FS=14.379;HaplotypeScore=13.6518;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.797;QD=22.48;ReadPosRankSum=3.397;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:4,216:223:99:5013,579,0 chrXIV 560302 . A G 4366.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.62;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4366,495,0 chrXIV 560362 . C T 3918.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=22.14;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3918,429,0 chrXIV 560367 . C T 3752.01 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.44;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3752,414,0 chrXIV 560371 . G A 3654.01 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.88;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3654,411,0 chrXIV 560592 . A G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.350;DP=99;Dels=0.00;FS=17.175;HaplotypeScore=6.6047;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;MQRankSum=-2.469;QD=16.48;ReadPosRankSum=2.469;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:5,94:99:99:1665,198,0 chrXIV 560600 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.04;FS=0.000;HaplotypeScore=8.3801;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=16.05;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1494,168,0 chrXIV 560611 . T C 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=97;Dels=0.00;FS=13.312;HaplotypeScore=12.5838;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;MQRankSum=-0.021;QD=14.70;ReadPosRankSum=4.385;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:7,90:97:99:1459,174,0 chrXIV 560823 . T C 541 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=3.42;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:66:574,66,0 chrXIV 560870 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;QD=12.28;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1851,210,0 chrXIV 560881 . A G 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;MQRankSum=1.662;QD=13.71;ReadPosRankSum=2.418;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2171,252,0 chrXIV 560883 . T C 2131 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;QD=13.75;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2164,255,0 chrXIV 560907 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=0;QD=20.05;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2920,321,0 chrXIV 560909 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=17.86;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2659,312,0 chrXIV 560940 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=122.6671;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=21.52;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3153,348,0 chrXIV 561110 . G A 687 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=24.54;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:81:720,81,0 chrXIV 561164 . A T 320 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=0;QD=16.84;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:353,39,0 chrXIV 561180 . A G 164.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.868;DP=16;Dels=0.00;FS=12.041;HaplotypeScore=12.8067;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;MQRankSum=0.651;QD=10.25;ReadPosRankSum=1.519;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:24:197,24,0 chrXIV 561323 . G A 465 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.7789;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=10.33;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:498,57,0 chrXIV 561328 . C T 544 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=12.36;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:66:577,66,0 chrXIV 561352 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=9.5159;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=19.03;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1156,129,0 chrXIV 561560 . G T 1067 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=37.30;MQ0=0;QD=17.49;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1100,132,0 chrXIV 561711 . G A 15.19 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=84;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.00;MQ0=79;MQRankSum=1.231;QD=0.18;ReadPosRankSum=0.358;SB=-2.096e+00 GT:AD:DP:GQ:PL 0/1:79,5:84:16:45,0,16 chrXIV 563266 . G T 78.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.37;MQ0=0;QD=15.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:111,12,0 chrXIV 563408 . T C 68.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=0;QD=11.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:101,12,0 chrXIV 563413 . T A 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=0;QD=12.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:110,12,0 chrXIV 563416 . G A 79.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=0;QD=13.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:112,12,0 chrXIV 563428 . G A 78.51 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=0;QD=13.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:111,12,0 chrXIV 567945 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.94;MQ0=20;MQRankSum=0.573;QD=0.36;ReadPosRankSum=-2.054;SB=-6.494e-03 GT:AD:DP:GQ:PL 0/1:22,7:29:40:40,0,61 chrXIV 567957 . C T 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=12;MQRankSum=0.829;QD=1.70;ReadPosRankSum=-2.725;SB=0.015 GT:AD:DP:GQ:PL 0/1:15,15:30:53:81,0,53 chrXIV 567963 . A G 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=9;MQRankSum=0.839;QD=1.86;ReadPosRankSum=-2.404;SB=0.028 GT:AD:DP:GQ:PL 0/1:12,16:28:54:82,0,54 chrXIV 567964 . G A 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=9;MQRankSum=0.839;QD=2.07;ReadPosRankSum=-2.292;SB=0.021 GT:AD:DP:GQ:PL 0/1:12,16:28:55:88,0,55 chrXIV 567969 . T C 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=6;MQRankSum=0.861;QD=1.86;ReadPosRankSum=-2.200;SB=0.101 GT:AD:DP:GQ:PL 0/1:9,19:28:55:82,0,55 chrXIV 567976 . T G 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=5;MQRankSum=0.873;QD=2.41;ReadPosRankSum=-1.484;SB=0.507 GT:AD:DP:GQ:PL 0/1:8,21:29:54:100,0,54 chrXIV 567993 . C G 83.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.9210;MLEAC=1;MLEAF=0.500;MQ=24.08;MQ0=3;MQRankSum=4.988;QD=1.57;ReadPosRankSum=5.445;SB=-1.414e-01 GT:AD:DP:GQ:PL 0/1:30,21:53:12:113,0,12 chrXIV 567996 . T A 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.726;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=8.9104;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=2;MQRankSum=3.070;QD=1.36;ReadPosRankSum=1.899;SB=-9.959e-03 GT:AD:DP:GQ:PL 0/1:35,21:56:28:106,0,28 chrXIV 568008 . G A 92.26 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=2.64;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:15:125,15,0 chrXIV 568045 . T A 489 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=8.89;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,54:55:60:522,60,0 chrXIV 568046 . T C 472 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=8.58;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:60:505,60,0 chrXIV 568278 . C T 2635 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=18.05;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2668,309,0 chrXIV 568362 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=127;Dels=0.04;FS=11.452;HaplotypeScore=34.0052;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.415;QD=19.49;ReadPosRankSum=2.941;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:3,116:122:99:2508,291,0 chrXIV 568488 . T G 2680 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.15;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2713,309,0 chrXIV 568547 . A G 2720 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.76;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2753,324,0 chrXIV 568887 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=144;Dels=0.00;FS=10.448;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.774;QD=23.13;ReadPosRankSum=2.398;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3330,393,0 chrXIV 568967 . A G 4614.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.97;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4614,534,0 chrXIV 569371 . G A 5687.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.21;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5687,630,0 chrXIV 569590 . A G 5157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.607;QD=21.94;ReadPosRankSum=1.688;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5157,588,0 chrXIV 569810 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.3261;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;MQRankSum=1.404;QD=15.55;ReadPosRankSum=1.716;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:3296,387,0 chrXIV 569942 . C T 1696 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=13;QD=15.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:1729,192,0 chrXIV 569961 . G C 1578 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=17.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1611,183,0 chrXIV 569965 . C A 1496 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=15.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1529,174,0 chrXIV 569972 . C A 1396 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=0;QD=14.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1429,165,0 chrXIV 569990 . T A 1090 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=1;QD=12.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1123,126,0 chrXIV 569992 . C A 986 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=1;QD=11.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1019,117,0 chrXIV 570020 . C T 604 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=3;QD=6.16;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:69:637,69,0 chrXIV 570034 . C A 539 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5424;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=10;QD=5.18;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,104:104:60:572,60,0 chrXIV 570447 . G A 150.06 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.23;MQ0=48;QD=1.63;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,92:92:21:183,21,0 chrXIV 570461 . G A 172.03 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.65;MQ0=47;QD=1.46;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,118:118:24:205,24,0 chrXIV 570509 . T C 734 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.80;MQ0=46;MQRankSum=-2.938;QD=5.78;ReadPosRankSum=2.913;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,124:127:84:767,84,0 chrXIV 570574 . G A 3080 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=32;QD=20.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3113,342,0 chrXIV 570597 . G A 3830.01 filter AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=27;QD=20.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3830,417,0 chrXIV 570609 . A G 3652.01 filter AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=33;QD=17.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:3652,426,0 chrXIV 570732 . C T 2961 filter AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=68;QD=13.28;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,220:223:99:2994,348,0 chrXIV 570761 . C T 3164 filter AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=93;QD=13.58;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,231:233:99:3197,348,0 chrXIV 570935 . C T 1810 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=53;QD=13.41;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:1843,201,0 chrXIV 570941 . T C 1214 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=59;QD=10.65;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1247,144,0 chrXIV 570946 . G C 1087 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=61;QD=10.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1120,129,0 chrXIV 570956 . A G 260 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.97;MQ0=66;QD=3.29;SB=-2.600e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:36:293,36,0 chrXIV 571049 . G A 2331 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=193;Dels=0.00;FS=21.732;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=44;MQRankSum=1.686;QD=12.08;ReadPosRankSum=-1.686;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:2364,239,0 chrXIV 571139 . C A 590 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=4;QD=12.83;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:69:623,69,0 chrXIV 571535 . C G 1459 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.08;MQ0=42;QD=11.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1492,180,0 chrXIV 571751 . G A 2738 filter AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=37;QD=13.55;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,202:202:99:2771,306,0 chrXIV 571766 . C T 2800 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=13;QD=14.29;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,195:196:99:2833,327,0 chrXIV 571793 . A G 1514 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=136;Dels=0.00;FS=6.767;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.57;MQ0=8;MQRankSum=-1.105;QD=11.13;ReadPosRankSum=2.392;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:1547,177,0 chrXIV 571841 . C T 270 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.66;MQ0=32;QD=5.09;SB=-2.700e+01 GT:AD:DP:GQ:PL 1/1:0,51:53:33:303,33,0 chrXIV 571889 . T C 46.97 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.33;MQ0=38;QD=0.82;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,57:57:9:79,9,0 chrXIV 571940 . T C 157.06 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.27;MQ0=9;QD=1.89;SB=-7.490e-02 GT:AD:DP:GQ:PL 1/1:0,82:83:21:190,21,0 chrXIV 571968 . T C 307 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.56;MQ0=1;QD=3.89;SB=-7.608e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:39:340,39,0 chrXIV 571979 . C T 300 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=3;QD=4.17;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,69:72:36:333,36,0 chrXIV 571992 . T C 255 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.62;MQ0=4;QD=4.81;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:33:288,33,0 chrXIV 572008 . G A 266 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.24;MQ0=5;QD=6.19;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:33:299,33,0 chrXIV 572015 . C T 270 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=5;QD=6.75;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:33:303,33,0 chrXIV 572516 . T C 66.51 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=17.70;MQ0=2;QD=0.62;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,58:108:12:99,12,0 chrXIV 572529 . C T 65.51 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.70;MQ0=1;QD=0.61;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,108:108:12:98,12,0 chrXIV 572596 . C T 149.06 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.07;MQ0=4;QD=2.62;SB=-9.756e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:21:182,21,0 chrXIV 572597 . T C 149.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=61;Dels=0.00;FS=9.099;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.79;MQ0=4;MQRankSum=-3.077;QD=2.44;ReadPosRankSum=3.296;SB=-9.556e+01 GT:AD:DP:GQ:PL 1/1:4,57:61:21:182,21,0 chrXIV 572607 . C T 504 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=7;QD=6.63;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:60:537,60,0 chrXIV 572643 . A G 831 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=70;Dels=0.00;FS=8.648;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=23;MQRankSum=3.260;QD=11.87;ReadPosRankSum=3.183;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:4,66:70:99:864,99,0 chrXIV 572678 . C T 1870 filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.0240;MLEAC=2;MLEAF=1.00;MQ=24.49;MQ0=21;QD=9.69;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,191:193:99:1903,213,0 chrXIV 572788 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.99;MQ0=5;QD=1.47;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,33:34:9:82,9,0 chrXIV 572878 . G A 683 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=10;QD=13.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:52:78:716,78,0 chrXIV 572915 . C T 818 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=20.45;MQ0=49;QD=8.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,97:99:93:851,93,0 chrXIV 573662 . C T 580 filter AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.49;MQ0=105;QD=3.43;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,169:169:69:613,69,0 chrXIV 573694 . A G 1802 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=63;QD=9.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:1835,207,0 chrXIV 573718 . C T 1860 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=19;QD=12.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:1893,213,0 chrXIV 573721 . C T 1837 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=18;QD=12.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1870,210,0 chrXIV 573730 . A G 1804 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=15;QD=12.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:1837,207,0 chrXIV 573783 . C T 405 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.77;MQ0=32;QD=5.79;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,69:70:51:438,51,0 chrXIV 573796 . A G 518 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=39;QD=6.73;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,76:77:63:551,63,0 chrXIV 574001 . A C 1759 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.530;DP=117;Dels=0.00;FS=20.805;HaplotypeScore=87.6557;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=14;MQRankSum=0.994;QD=15.03;ReadPosRankSum=3.718;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:5,110:117:99:1792,204,0 chrXIV 574150 . T C 3068 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.2931;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.16;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3101,354,0 chrXIV 574160 . A G 2857 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.55;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2890,333,0 chrXIV 574318 . A G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0288;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.919;QD=22.49;ReadPosRankSum=1.697;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2237,255,0 chrXIV 574396 . G A 2331 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.63;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2364,270,0 chrXIV 574536 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=25.92;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4173,450,0 chrXIV 574682 . C T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.9355;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.34;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4446,483,0 chrXIV 574776 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.42;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3855,429,0 chrXIV 574790 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=3.196;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.965;QD=20.13;ReadPosRankSum=1.711;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3362,396,0 chrXIV 575525 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.97;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3180,363,0 chrXIV 576054 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.05;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3296,378,0 chrXIV 576084 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0207;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.87;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3796,423,0 chrXIV 576124 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.7325;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.39;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3953,453,0 chrXIV 576383 . A G 5204.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=21.15;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5204,594,0 chrXIV 576450 . C T 4801.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.33;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4801,522,0 chrXIV 577134 . A T 1014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.3600;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.746;QD=17.19;ReadPosRankSum=2.280;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:2,56:59:99:1047,114,0 chrXIV 577194 . A G 1310 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.26;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:68:99:1343,162,0 chrXIV 577250 . C G 4527.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6575;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.86;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4527,542,0 chrXIV 577408 . C T 4638.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=20.99;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4638,516,0 chrXIV 577416 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.68;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4674,504,0 chrXIV 577421 . G A 4741.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=4.9678;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.75;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4741,522,0 chrXIV 577727 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.28;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3426,390,0 chrXIV 577754 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.40;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3424,372,0 chrXIV 577988 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.984;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.411;QD=23.44;ReadPosRankSum=-1.732;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3282,359,0 chrXIV 578264 . T C 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8722;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.821;QD=22.88;ReadPosRankSum=2.413;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4576,525,0 chrXIV 578294 . G A 4731.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.54;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4731,525,0 chrXIV 578366 . T C 5175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.800;DP=237;Dels=0.00;FS=11.126;HaplotypeScore=14.1689;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.030;QD=21.84;ReadPosRankSum=3.720;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:5,231:237:99:5175,597,0 chrXIV 578399 . G A 5718.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.34;SB=-3.045e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5718,624,0 chrXIV 578628 . T G 7955.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=19.7915;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.75;SB=-3.422e+03 GT:AD:DP:GQ:PL 1/1:0,333:335:99:7955,909,0 chrXIV 579033 . A G 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=218;Dels=0.00;FS=7.521;HaplotypeScore=8.9728;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.107;QD=21.85;ReadPosRankSum=2.404;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4764,543,0 chrXIV 579044 . T A 4404.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.4555;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.69;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4404,483,0 chrXIV 579121 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=17.1209;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.053;QD=19.83;ReadPosRankSum=1.709;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3028,351,0 chrXIV 579774 . C T 4904.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.02;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4904,546,0 chrXIV 579789 . G A 4461.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.75;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4461,489,0 chrXIV 579972 . G A 455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=193.1062;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.365;QD=2.02;ReadPosRankSum=-1.142;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:38:488,38,0 chrXIV 580005 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=211;Dels=0.00;FS=3.095;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.300;QD=15.89;ReadPosRankSum=1.682;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:1,207:211:99:3353,396,0 chrXIV 580123 . G A 5207.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.06;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5207,591,0 chrXIV 580128 . C T 5115.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.77;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5115,582,0 chrXIV 580197 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=218;Dels=0.00;FS=3.261;HaplotypeScore=14.0584;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.421;QD=20.90;ReadPosRankSum=1.684;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,213:218:99:4557,516,0 chrXIV 580971 . C A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3354,369,0 chrXIV 581472 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.4229;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.04;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2257,252,0 chrXIV 581502 . A G 2073 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.82;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2106,237,0 chrXIV 581872 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.13;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2970,330,0 chrXIV 581882 . G T 2838 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.85;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2871,318,0 chrXIV 582726 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.90;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3752,423,0 chrXIV 582846 . G A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4133,450,0 chrXIV 583035 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.73;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2771,303,0 chrXIV 583236 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.8699;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.36;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2767,315,0 chrXIV 583727 . G T 2268 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2301,264,0 chrXIV 583844 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2466,273,0 chrXIV 584126 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.31;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3047,336,0 chrXIV 584389 . G C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.44;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3680,417,0 chrXIV 584661 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.49;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4256,486,0 chrXIV 584770 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.38;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3334,369,0 chrXIV 585226 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.29;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4052,471,0 chrXIV 585303 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.74;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3012,342,0 chrXIV 585828 . T C 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=3.925;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.153;QD=21.24;ReadPosRankSum=1.601;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1732,195,0 chrXIV 586211 . A T 2633 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.94;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2666,291,0 chrXIV 586230 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-1.576;QD=20.64;ReadPosRankSum=1.670;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2324,264,0 chrXIV 586251 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.31;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2308,258,0 chrXIV 586365 . G C 2935 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.93;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2968,345,0 chrXIV 586448 . T A 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.587;QD=23.62;ReadPosRankSum=1.703;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2820,318,0 chrXIV 586543 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.20;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2836,327,0 chrXIV 586546 . C G 2873 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=18.18;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2906,324,0 chrXIV 586773 . T C 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=4.509;HaplotypeScore=13.6421;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.257;QD=22.13;ReadPosRankSum=1.715;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4648,537,0 chrXIV 587725 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.78;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3131,348,0 chrXIV 587957 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.417;QD=22.10;ReadPosRankSum=1.706;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2994,336,0 chrXIV 587965 . C A 2871 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.43;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2904,336,0 chrXIV 588114 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.15;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2556,276,0 chrXIV 588272 . A T 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=5.747;HaplotypeScore=5.1393;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.305;QD=24.42;ReadPosRankSum=1.710;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3761,417,0 chrXIV 588302 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.122;QD=23.11;ReadPosRankSum=1.712;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3952,462,0 chrXIV 588587 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.41;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3054,351,0 chrXIV 588614 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.979;HaplotypeScore=9.4199;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.531;QD=21.83;ReadPosRankSum=1.710;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3383,399,0 chrXIV 589058 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.690;QD=21.15;ReadPosRankSum=1.648;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3490,408,0 chrXIV 589622 . A T 6266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=279;Dels=0.00;FS=5.365;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.579;QD=22.46;ReadPosRankSum=2.932;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:3,276:279:99:6266,696,0 chrXIV 589664 . A T 6718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=293;Dels=0.00;FS=2.564;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.179;QD=22.93;ReadPosRankSum=2.935;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:3,289:292:99:6718,735,0 chrXIV 589772 . G A 7096.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=20.3049;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.60;SB=-3.836e+03 GT:AD:DP:GQ:PL 1/1:0,312:314:99:7096,780,0 chrXIV 589805 . C A 6488.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.5196;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.85;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:6488,729,0 chrXIV 589843 . A G 6148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=259;Dels=0.00;FS=8.436;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.509;QD=23.74;ReadPosRankSum=2.392;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:2,256:259:99:6148,699,0 chrXIV 589946 . A T 6599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=294;Dels=0.00;FS=3.253;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.650;QD=22.45;ReadPosRankSum=1.673;SB=-3.565e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6599,732,0 chrXIV 590240 . T A 4646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=223;Dels=0.00;FS=16.538;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.121;QD=20.83;ReadPosRankSum=3.304;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:4,219:223:99:4646,531,0 chrXIV 590342 . C T 5028.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.7434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.49;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5028,558,0 chrXIV 590468 . C A 4594.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.93;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4594,501,0 chrXIV 590482 . G A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.1187;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.55;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4921,540,0 chrXIV 590594 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3842,429,0 chrXIV 590927 . C T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.82;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4311,483,0 chrXIV 591104 . A G 3199 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.4868;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.04;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3232,375,0 chrXIV 591114 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.8761;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.48;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3481,378,0 chrXIV 591189 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.6112;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.63;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3278,378,0 chrXIV 591328 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.66;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2548,285,0 chrXIV 591344 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.35;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2434,282,0 chrXIV 591556 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3496;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.541;QD=22.17;ReadPosRankSum=1.565;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3248,375,0 chrXIV 591594 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.10;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3404,375,0 chrXIV 591640 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=3.084;HaplotypeScore=8.4204;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.364;QD=21.28;ReadPosRankSum=1.713;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3809,444,0 chrXIV 591997 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.90;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3252,372,0 chrXIV 592102 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.98;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4172,468,0 chrXIV 592909 . T C 3141 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.81;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3174,360,0 chrXIV 593099 . T C 2257 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.90;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2290,267,0 chrXIV 593117 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.14;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2369,261,0 chrXIV 594246 . G A 5018.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5018,555,0 chrXIV 594705 . T A 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=194;Dels=0.00;FS=3.032;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.690;QD=23.81;ReadPosRankSum=2.374;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4619,510,0 chrXIV 595123 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.32;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2488,276,0 chrXIV 595515 . C A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.25;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3611,396,0 chrXIV 595549 . A T 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.358;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.637;QD=24.26;ReadPosRankSum=1.554;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2871,318,0 chrXIV 595665 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.6876;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.67;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3977,450,0 chrXIV 595721 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.2786;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.373;QD=19.46;ReadPosRankSum=1.710;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3146,347,0 chrXIV 595762 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.10;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3008,348,0 chrXIV 595767 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.05;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3303,363,0 chrXIV 596172 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=185;Dels=0.00;FS=7.109;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.034;QD=19.22;ReadPosRankSum=1.698;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3555,405,0 chrXIV 596175 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.19;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3511,393,0 chrXIV 596346 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.7181;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.61;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4205,468,0 chrXIV 596487 . A G 5442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.718;QD=21.86;ReadPosRankSum=1.718;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:1,246:249:99:5442,615,0 chrXIV 596700 . A T 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.966;QD=22.59;ReadPosRankSum=1.659;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4292,492,0 chrXIV 596826 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.72;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2830,315,0 chrXIV 597333 . T C 5744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.894;QD=23.07;ReadPosRankSum=1.704;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5744,663,0 chrXIV 597474 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=7.9394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.795;QD=20.52;ReadPosRankSum=1.712;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3530,411,0 chrXIV 597807 . C G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.417;QD=22.55;ReadPosRankSum=-2.075;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3428,364,0 chrXIV 598012 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=161;Dels=0.00;FS=7.599;HaplotypeScore=8.7615;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=2.311;QD=22.48;ReadPosRankSum=2.342;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3620,417,0 chrXIV 598059 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=18.64;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2903,330,0 chrXIV 598176 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=16.79;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1326,150,0 chrXIV 598179 . A C 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.01;FS=3.129;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=1;MQRankSum=-1.030;QD=15.27;ReadPosRankSum=1.685;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1178,135,0 chrXIV 598229 . T G 125.13 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=67.7226;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=9;QD=1.47;SB=-1.841e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:18:158,18,0 chrXIV 598433 . T C 248 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.005;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=14.85;MQ0=43;MQRankSum=1.015;QD=2.64;ReadPosRankSum=2.352;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:2,91:94:33:281,33,0 chrXIV 598446 . G A 462 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=15.14;MQ0=36;QD=4.57;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,100:101:57:495,57,0 chrXIV 598499 . T C 1165 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.04;MQ0=13;MQRankSum=-1.283;QD=7.66;ReadPosRankSum=1.707;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,149:152:99:1198,138,0 chrXIV 598508 . G A 1064 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=7;QD=7.71;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1097,129,0 chrXIV 598511 . G A 1094 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.06;MQ0=9;QD=7.93;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1127,129,0 chrXIV 598535 . T C 789 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.34;MQ0=51;QD=5.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,153:153:96:822,96,0 chrXIV 598567 . G A 73.51 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.76;MQ0=101;QD=0.52;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,140:141:12:106,12,0 chrXIV 598635 . C T 2105 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.13;MQ0=69;QD=11.83;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2138,237,0 chrXIV 598648 . G C 2351 filter AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.2581;MLEAC=2;MLEAF=1.00;MQ=19.05;MQ0=46;QD=12.44;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:2384,279,0 chrXIV 598661 . C G 3035 filter AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=25;QD=14.52;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:3068,354,0 chrXIV 598787 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.15;MQ0=143;QD=0.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,144:146:9:77,9,0 chrXIV 598922 . A G 775 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=12.36;MQ0=117;MQRankSum=-0.011;QD=3.86;ReadPosRankSum=3.350;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:4,195:201:93:808,93,0 chrXIV 598955 . A G 535 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.017;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=11.51;MQ0=133;MQRankSum=0.522;QD=2.72;ReadPosRankSum=1.677;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:1,196:197:66:568,66,0 chrXIV 599210 . T C 6810.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.980;DP=372;Dels=0.00;FS=13.311;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=21;MQRankSum=-2.723;QD=18.31;ReadPosRankSum=2.929;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:3,366:372:99:6810,789,0 chrXIV 599232 . A G 8993.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=441;Dels=0.00;FS=0.000;HaplotypeScore=12.2773;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=3;MQRankSum=-0.542;QD=20.39;ReadPosRankSum=2.427;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:2,438:441:99:8993,1038,0 chrXIV 599314 . G A 5400.01 filter AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=19.0651;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=54;QD=16.98;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:5400,597,0 chrXIV 599550 . T C 860 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=104;Dels=0.00;FS=14.363;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.84;MQ0=32;MQRankSum=-2.415;QD=8.27;ReadPosRankSum=2.381;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:893,105,0 chrXIV 599551 . G A 906 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=32;QD=8.80;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:939,105,0 chrXIV 599612 . T G 1163 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=168;Dels=0.00;FS=9.374;HaplotypeScore=5.7327;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=11;MQRankSum=-1.890;QD=6.92;ReadPosRankSum=2.955;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:3,163:168:99:1196,138,0 chrXIV 599622 . G A 1617 filter AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.3779;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=5;QD=8.34;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:1650,183,0 chrXIV 599629 . C T 1807 filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=4;QD=8.37;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:1840,204,0 chrXIV 599633 . G A 1739 filter AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=4;QD=8.28;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:1772,195,0 chrXIV 599654 . A G 1216 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=184;Dels=0.00;FS=6.241;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=4;MQRankSum=-1.767;QD=6.61;ReadPosRankSum=2.422;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:1249,144,0 chrXIV 599709 . T G 1093 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=6.51;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:1126,129,0 chrXIV 599723 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.5836;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=4.78;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:1190,132,0 chrXIV 599727 . A G 868.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.592;DP=248;Dels=0.00;FS=73.213;HaplotypeScore=13.9897;MLEAC=1;MLEAF=0.500;MQ=32.36;MQ0=1;MQRankSum=-1.440;QD=3.50;ReadPosRankSum=-10.111;SB=-1.044e+03 GT:AD:DP:GQ:PL 0/1:104,142:248:84:898,0,84 chrXIV 599736 . A G,T 1190.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.614;DP=237;Dels=0.00;FS=3.439;HaplotypeScore=10.0463;MLEAC=1,1;MLEAF=0.500,0.500;MQ=33.91;MQ0=2;MQRankSum=-0.287;QD=5.02;ReadPosRankSum=1.717;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/2:1,120,116:237:99:1250,633,555,617,0,536 chrXIV 599743 . A C 194.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.840;DP=236;Dels=0.00;FS=28.268;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=36.36;MQ0=3;MQRankSum=-1.603;QD=0.82;ReadPosRankSum=-12.421;SB=-6.480e+02 GT:AD:DP:GQ:PL 0/1:146,89:236:99:224,0,958 chrXIV 600064 . T C 8401.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=21.2574;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=21.65;SB=-3.732e+03 GT:AD:DP:GQ:PL 1/1:0,386:388:99:8401,954,0 chrXIV 600236 . G A 8956.01 filter AC=2;AF=1.00;AN=2;DP=413;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=7;QD=21.69;SB=-5.021e+03 GT:AD:DP:GQ:PL 1/1:0,413:413:99:8956,990,0 chrXIV 600259 . A G 7349.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=373;Dels=0.00;FS=2.666;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=6;MQRankSum=-1.714;QD=19.70;ReadPosRankSum=2.196;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:2,371:373:99:7349,852,0 chrXIV 600272 . G A 6635.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=331;Dels=0.00;FS=11.511;HaplotypeScore=3.7622;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=5;MQRankSum=0.975;QD=20.05;ReadPosRankSum=1.396;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,329:331:99:6635,732,0 chrXIV 600283 . A G 5924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.411;DP=316;Dels=0.00;FS=2.337;HaplotypeScore=2.7728;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=3;MQRankSum=-2.655;QD=18.75;ReadPosRankSum=3.356;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:4,312:316:99:5924,695,0 chrXIV 600311 . A G 5476.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=10.1717;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=19;MQRankSum=-3.136;QD=17.44;ReadPosRankSum=3.011;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:4,310:314:99:5476,624,0 chrXIV 600362 . A G 6020.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=20.4719;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=41;MQRankSum=0.205;QD=17.20;ReadPosRankSum=2.964;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:3,347:350:99:6020,696,0 chrXIV 600410 . G A 7064.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=26;QD=19.57;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,360:361:99:7064,792,0 chrXIV 600458 . T C 5356.01 filter AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=19.7955;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=15;QD=19.99;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5356,621,0 chrXIV 600480 . G A 3197 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=15;QD=17.96;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3230,363,0 chrXIV 600485 . G A 2628 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=17;QD=17.29;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2661,318,0 chrXIV 600500 . C T 1774 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.41;MQ0=38;QD=14.78;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1807,204,0 chrXIV 600614 . A G 6926.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=341;Dels=0.00;FS=3.751;HaplotypeScore=22.3836;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=29;MQRankSum=1.562;QD=20.31;ReadPosRankSum=0.985;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:3,332:341:99:6926,777,0 chrXIV 600716 . G C 7334.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=23.6395;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=50;QD=20.20;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,360:363:99:7334,840,0 chrXIV 600852 . G C 10557.01 filter AC=2;AF=1.00;AN=2;DP=514;Dels=0.00;FS=0.000;HaplotypeScore=22.5982;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=15;QD=20.54;SB=-5.504e+03 GT:AD:DP:GQ:PL 1/1:0,506:514:99:10557,1229,0 chrXIV 601277 . G A 9011.01 filter AC=2;AF=1.00;AN=2;DP=545;Dels=0.00;FS=0.000;HaplotypeScore=23.3265;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=88;QD=16.53;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,545:545:99:9011,1002,0 chrXIV 601316 . G A 6375.01 filter AC=2;AF=1.00;AN=2;DP=435;Dels=0.00;FS=0.000;HaplotypeScore=22.7587;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=59;QD=14.66;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,435:435:99:6375,720,0 chrXIV 601364 . A G 1500 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.970;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=19.8862;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=49;MQRankSum=-0.594;QD=8.98;ReadPosRankSum=2.408;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:2,165:167:99:1533,174,0 chrXIV 601379 . A C 803 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=41;QD=7.95;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:836,99,0 chrXIV 601465 . G A 109.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.36;MQ0=111;QD=0.73;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,150:150:15:142,15,0 chrXIV 601469 . C T 102.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.28;MQ0=114;QD=0.67;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,153:153:15:135,15,0 chrXIV 601474 . T C 111.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=165;Dels=0.00;FS=41.520;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=9.08;MQ0=120;MQRankSum=-2.070;QD=0.67;ReadPosRankSum=2.844;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:3,162:165:15:144,15,0 chrXIV 601501 . C T 874 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=90;QD=4.86;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,180:180:99:907,105,0 chrXIV 601519 . G A 977 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=18.08;MQ0=78;QD=6.26;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1010,117,0 chrXIV 601544 . T C 933 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=124;Dels=0.00;FS=10.682;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=63;MQRankSum=0.204;QD=7.52;ReadPosRankSum=2.883;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:3,120:124:99:966,114,0 chrXIV 601642 . T C 542 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.596;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=15.23;MQ0=37;MQRankSum=1.034;QD=4.88;ReadPosRankSum=3.532;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:5,106:111:66:575,66,0 chrXIV 601654 . C T 746 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=17.78;MQ0=35;QD=5.97;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:87:779,87,0 chrXIV 601790 . C T 1938 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=38;QD=12.42;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,147:156:99:1971,225,0 chrXIV 601804 . C T 1736 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=45;QD=12.31;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1769,198,0 chrXIV 601842 . A G 538 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=39;QD=3.41;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:66:571,66,0 chrXIV 601869 . T C 1801 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=224;Dels=0.00;FS=6.059;HaplotypeScore=4.2865;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=13;MQRankSum=-0.929;QD=8.04;ReadPosRankSum=2.967;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:1834,210,0 chrXIV 602155 . G T 7896.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=12.8906;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=33;QD=21.00;SB=-4.209e+03 GT:AD:DP:GQ:PL 1/1:0,376:376:99:7896,882,0 chrXIV 602249 . T G 5710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=321;Dels=0.00;FS=10.958;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;MQRankSum=-2.228;QD=17.79;ReadPosRankSum=2.966;SB=-3.216e+03 GT:AD:DP:GQ:PL 1/1:3,318:321:99:5710,657,0 chrXIV 602277 . A G 4958.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=318;Dels=0.00;FS=8.912;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;MQRankSum=-2.028;QD=15.59;ReadPosRankSum=3.412;SB=-3.700e+03 GT:AD:DP:GQ:PL 1/1:4,314:318:99:4958,567,0 chrXIV 602280 . G T 5211.01 SnpCluster AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=16.65;SB=-3.767e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:5211,576,0 chrXIV 602287 . G T 4656.01 SnpCluster AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=3.9874;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=15.27;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:4656,519,0 chrXIV 602296 . A G 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.787;DP=312;Dels=0.00;FS=7.944;HaplotypeScore=12.7707;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;MQRankSum=2.667;QD=15.00;ReadPosRankSum=3.757;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:5,306:312:99:4680,531,0 chrXIV 602396 . A G 338 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=126.4890;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=11;MQRankSum=-0.929;QD=1.94;ReadPosRankSum=1.709;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,161:174:45:371,45,0 chrXIV 602404 . C G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=11;QD=0.14;SB=-9.558e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:6:55,6,0 chrXIV 602658 . T C 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.00;FS=2.885;HaplotypeScore=14.4176;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.274;QD=19.40;ReadPosRankSum=2.383;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:2924,342,0 chrXIV 602839 . C T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.63;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4548,501,0 chrXIV 602860 . A T 5128.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.9991;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.20;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5128,576,0 chrXIV 603709 . G A 6478.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=20.7375;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.03;SB=-3.294e+03 GT:AD:DP:GQ:PL 1/1:0,305:308:99:6478,720,0 chrXIV 603860 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=177;Dels=0.00;FS=3.729;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.360;QD=21.33;ReadPosRankSum=1.693;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3776,438,0 chrXIV 604247 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.30;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2908,318,0 chrXIV 605755 . T A 98.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.751;QD=10.92;ReadPosRankSum=0.751;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,8:9:15:131,15,0 chrXIV 606035 . C T 899 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:932,102,0 chrXIV 606080 . T C 971 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=17.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1004,111,0 chrXIV 606094 . T C 889 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=18.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:49:99:922,105,0 chrXIV 606098 . T C 896 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=18.29;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:929,105,0 chrXIV 606111 . C A 876 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=19.47;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:909,99,0 chrXIV 606438 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2493,282,0 chrXIV 606872 . G A 4772.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.09;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4772,519,0 chrXIV 606892 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=203;Dels=0.00;FS=2.877;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.153;QD=19.91;ReadPosRankSum=2.376;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,198:203:99:4041,462,0 chrXIV 606972 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=185;Dels=0.00;FS=3.932;HaplotypeScore=11.2752;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.994;QD=21.70;ReadPosRankSum=1.713;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4015,471,0 chrXIV 607149 . T C 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=195;Dels=0.00;FS=2.991;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.623;QD=22.24;ReadPosRankSum=2.387;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4336,504,0 chrXIV 607236 . G A 4827.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.01;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4827,537,0 chrXIV 607416 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.7856;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.73;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4343,483,0 chrXIV 607545 . A G 5377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=233;Dels=0.00;FS=3.531;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.536;QD=23.08;ReadPosRankSum=1.687;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:1,229:233:99:5377,609,0 chrXIV 607581 . C T 6049.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.54;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6049,666,0 chrXIV 607680 . G A 5088.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.6853;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.41;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,222:227:99:5088,564,0 chrXIV 607860 . C T 4895.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.35;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4895,546,0 chrXIV 607882 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.37;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5101,576,0 chrXIV 608001 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.15;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3791,423,0 chrXIV 608183 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.147;QD=20.68;ReadPosRankSum=1.662;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3156,360,0 chrXIV 608586 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=201;Dels=0.00;FS=12.989;HaplotypeScore=15.2594;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.673;QD=20.61;ReadPosRankSum=2.388;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4142,465,0 chrXIV 608964 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.9481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4561,519,0 chrXIV 609093 . T C 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=7.504;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.397;QD=22.57;ReadPosRankSum=2.382;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:4153,474,0 chrXIV 609573 . A G 834 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.53;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:45:99:867,99,0 chrXIV 609611 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2499;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.24;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1170,132,0 chrXIV 609697 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.54;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2462,273,0 chrXIV 610323 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.57;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2588,282,0 chrXIV 610460 . T G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=117;Dels=0.00;FS=3.692;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.074;QD=20.87;ReadPosRankSum=1.673;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2475,288,0 chrXIV 610512 . A C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=130;Dels=0.00;FS=8.180;HaplotypeScore=5.8759;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.653;QD=21.25;ReadPosRankSum=1.825;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2795,310,0 chrXIV 610924 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.30;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2774,312,0 chrXIV 610951 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.32;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3167,357,0 chrXIV 611020 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=154;Dels=0.00;FS=14.836;HaplotypeScore=9.3683;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.344;QD=22.10;ReadPosRankSum=3.402;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3403,390,0 chrXIV 611511 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.99;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3266,354,0 chrXIV 611523 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.73;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2873,318,0 chrXIV 611973 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=17.97;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1704,192,0 chrXIV 611974 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.35;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1703,192,0 chrXIV 612031 . A T 2131 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.20;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2164,237,0 chrXIV 612465 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.15;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4452,486,0 chrXIV 612917 . A G 3050 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.89;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3083,357,0 chrXIV 613156 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=22.69;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3744,426,0 chrXIV 613183 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=22.59;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3840,426,0 chrXIV 613268 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.70;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3245,354,0 chrXIV 613272 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.538;QD=20.25;ReadPosRankSum=1.637;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2989,345,0 chrXIV 613350 . A T 2276 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=18.50;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2309,252,0 chrXIV 613373 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=17.25;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2017,222,0 chrXIV 613374 . T C 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=4.272;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=-1.280;QD=15.95;ReadPosRankSum=1.702;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1867,222,0 chrXIV 613397 . T C 1925 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=15.52;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1958,222,0 chrXIV 613403 . A G 1829 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=14.87;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1862,210,0 chrXIV 613459 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=126;Dels=0.00;FS=5.663;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.032;QD=19.08;ReadPosRankSum=2.944;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2437,279,0 chrXIV 614264 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3115,345,0 chrXIV 614723 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6769;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.95;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2777,318,0 chrXIV 614760 . T A 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=3.133;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.313;QD=21.94;ReadPosRankSum=1.660;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3193,363,0 chrXIV 614937 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.49;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3329,384,0 chrXIV 614988 . A T 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.356;QD=20.40;ReadPosRankSum=1.637;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3012,345,0 chrXIV 615001 . T G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=3.405;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.255;QD=19.71;ReadPosRankSum=1.707;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2793,318,0 chrXIV 615141 . A T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.92;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3599,396,0 chrXIV 615305 . A C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.563;QD=22.06;ReadPosRankSum=-1.732;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2791,302,0 chrXIV 615417 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.057;QD=20.94;ReadPosRankSum=1.704;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2588,300,0 chrXIV 615447 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.531;HaplotypeScore=2.4511;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.467;QD=18.77;ReadPosRankSum=1.672;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2210,255,0 chrXIV 615459 . C T 1904 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=16.56;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1937,225,0 chrXIV 615483 . T C 2006 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.60;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2039,231,0 chrXIV 615696 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=24.27;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4126,453,0 chrXIV 615762 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.713;QD=22.81;ReadPosRankSum=1.713;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4151,468,0 chrXIV 616020 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.04;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2614,300,0 chrXIV 616166 . A C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.327;DP=143;Dels=0.00;FS=16.447;HaplotypeScore=9.9838;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.584;QD=17.55;ReadPosRankSum=3.765;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:8,133:143:99:2543,297,0 chrXIV 616170 . T A 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=137;Dels=0.00;FS=8.398;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=1.195;QD=18.67;ReadPosRankSum=3.343;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:2591,291,0 chrXIV 616492 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.8415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.02;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3633,414,0 chrXIV 616739 . A C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.020;QD=21.00;ReadPosRankSum=1.691;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1839,213,0 chrXIV 616975 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2321,255,0 chrXIV 617390 . G T 2822 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.33;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2855,321,0 chrXIV 617540 . A G 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.591;QD=22.31;ReadPosRankSum=1.697;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2242,252,0 chrXIV 617933 . A T 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.581;QD=23.91;ReadPosRankSum=1.675;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4376,486,0 chrXIV 618475 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1534,174,0 chrXIV 618509 . A G 1621 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1654,192,0 chrXIV 619089 . G T 206.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.294;DP=217;Dels=0.00;FS=0.567;HaplotypeScore=5.2480;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;MQRankSum=-12.234;QD=0.95;ReadPosRankSum=3.410;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:125,90:217:27:239,27,0 chrXIV 619092 . G T 324 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=6.096;DP=222;Dels=0.00;FS=1.159;HaplotypeScore=4.4046;MLEAC=2;MLEAF=1.00;MQ=34.76;MQ0=0;MQRankSum=-12.373;QD=1.46;ReadPosRankSum=4.860;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:123,99:222:39:357,39,0 chrXIV 619096 . T G 296 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.525;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;MQRankSum=-11.806;QD=1.33;ReadPosRankSum=4.721;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:111,111:222:39:329,39,0 chrXIV 619101 . T A 251.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-9.998;DP=215;Dels=0.00;FS=3.490;HaplotypeScore=6.3319;MLEAC=1;MLEAF=0.500;MQ=33.59;MQ0=0;MQRankSum=-11.962;QD=1.17;ReadPosRankSum=4.607;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/1:94,119:215:32:281,0,32 chrXIV 619110 . T A 533 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-9.161;DP=220;Dels=0.00;FS=0.574;HaplotypeScore=4.8943;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;MQRankSum=-10.346;QD=2.42;ReadPosRankSum=3.057;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:75,145:220:69:566,69,0 chrXIV 619113 . T A 535 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.976;DP=218;Dels=0.00;FS=0.611;HaplotypeScore=6.4717;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;MQRankSum=-9.466;QD=2.45;ReadPosRankSum=3.178;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:64,153:218:66:568,66,0 chrXIV 619117 . G T 706 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.505;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.5782;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;MQRankSum=-8.122;QD=3.08;ReadPosRankSum=4.595;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:60,169:229:84:739,84,0 chrXIV 619325 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=15.30;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3123,348,0 chrXIV 619930 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3071,348,0 chrXIV 620345 . T A 5212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=230;Dels=0.00;FS=9.436;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.873;QD=22.66;ReadPosRankSum=2.970;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:5212,579,0 chrXIV 620369 . T G 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=233;Dels=0.00;FS=6.826;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=1.180;QD=20.07;ReadPosRankSum=2.365;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:4676,543,0 chrXIV 620381 . T C 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=244;Dels=0.00;FS=7.193;HaplotypeScore=10.6446;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.279;QD=20.05;ReadPosRankSum=2.429;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:2,240:244:99:4891,555,0 chrXIV 620528 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.18;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4592,537,0 chrXIV 620819 . G A 5873.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=26.6971;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.20;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5873,648,0 chrXIV 621012 . C A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.1286;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.10;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4375,489,0 chrXIV 621080 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.337;QD=21.68;ReadPosRankSum=1.687;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3338,387,0 chrXIV 621247 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5258;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;MQRankSum=-1.355;QD=23.81;ReadPosRankSum=1.688;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3715,426,0 chrXIV 622084 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3554,405,0 chrXIV 622219 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.04;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3364,369,0 chrXIV 622639 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.146;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.648;QD=21.15;ReadPosRankSum=1.690;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3447,408,0 chrXIV 622973 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1852;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.31;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3659,411,0 chrXIV 623096 . G T 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.026;DP=170;Dels=0.00;FS=7.184;HaplotypeScore=20.6034;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.980;QD=18.78;ReadPosRankSum=4.082;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:7,159:170:99:3225,354,0 chrXIV 623097 . G T 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.802;DP=168;Dels=0.00;FS=7.177;HaplotypeScore=18.2374;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.389;QD=19.17;ReadPosRankSum=4.239;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:7,161:168:99:3253,357,0 chrXIV 623559 . T A 5502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=235;Dels=0.00;FS=3.711;HaplotypeScore=13.7077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.302;QD=23.41;ReadPosRankSum=1.673;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5502,612,0 chrXIV 624096 . A G 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=226;Dels=0.00;FS=3.498;HaplotypeScore=15.7527;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.659;QD=21.73;ReadPosRankSum=1.671;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4911,570,0 chrXIV 624859 . T A 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.426;QD=23.65;ReadPosRankSum=1.671;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2705,303,0 chrXIV 624946 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.44;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4375,474,0 chrXIV 625278 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.1182;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.26;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3874,423,0 chrXIV 625641 . T G 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=161;Dels=0.00;FS=6.158;HaplotypeScore=16.0461;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.221;QD=22.09;ReadPosRankSum=2.419;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3556,405,0 chrXIV 625761 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2622,288,0 chrXIV 625861 . C T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.59;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3539,396,0 chrXIV 626052 . T C 2216 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2249,264,0 chrXIV 626480 . C G 3784.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3784,444,0 chrXIV 626600 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.12;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4292,486,0 chrXIV 626648 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.3573;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.97;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3625,420,0 chrXIV 626702 . T C 2873 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.12;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2906,336,0 chrXIV 626804 . G C 1845 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1878,216,0 chrXIV 627124 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=109;Dels=0.00;FS=3.299;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=1.192;QD=20.59;ReadPosRankSum=1.700;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2277,267,0 chrXIV 627225 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=22.05;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2480,279,0 chrXIV 627371 . T A 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=96;Dels=0.00;FS=2.963;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=0.295;QD=15.07;ReadPosRankSum=2.091;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1480,168,0 chrXIV 627373 . A G 1446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.774;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;MQRankSum=-0.726;QD=15.38;ReadPosRankSum=1.658;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1479,171,0 chrXIV 627430 . T A 224 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=2.06;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:30:257,30,0 chrXIV 627558 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=24.10;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2539,279,0 chrXIV 627710 . T C 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=108;Dels=0.00;FS=6.088;HaplotypeScore=9.4090;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=1;MQRankSum=-0.349;QD=21.29;ReadPosRankSum=2.934;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2332,273,0 chrXIV 627908 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.94;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1964,219,0 chrXIV 627999 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2043,225,0 chrXIV 628148 . C T 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.313;DP=124;Dels=0.00;FS=5.371;HaplotypeScore=8.7132;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.648;QD=23.66;ReadPosRankSum=-1.341;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2967,314,0 chrXIV 628490 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=152;Dels=0.00;FS=10.588;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.305;QD=23.07;ReadPosRankSum=2.927;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3507,408,0 chrXIV 628571 . A C 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.923;QD=21.67;ReadPosRankSum=1.246;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2352,251,0 chrXIV 628615 . A G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.161;QD=19.89;ReadPosRankSum=1.618;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1883,216,0 chrXIV 628616 . G A 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.245;QD=21.90;ReadPosRankSum=2.129;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2048,228,0 chrXIV 628716 . G A 1182 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1215,135,0 chrXIV 628775 . A G 482 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.281;QD=15.06;ReadPosRankSum=2.292;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:2,29:32:57:515,57,0 chrXIV 628801 . A T 146.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=14.61;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:179,21,0 chrXIV 628827 . T C 117.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.159;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.869;QD=9.76;ReadPosRankSum=1.448;SB=-5.107e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:18:150,18,0 chrXIV 628889 . T C 1510 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.064;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.752;QD=23.59;ReadPosRankSum=2.373;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1543,171,0 chrXIV 629119 . A T 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=115;Dels=0.00;FS=6.291;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.230;QD=23.57;ReadPosRankSum=2.407;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2743,309,0 chrXIV 629280 . G C 2689 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.18;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2722,309,0 chrXIV 629299 . A G 2094 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.04;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2127,249,0 chrXIV 629307 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.44;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2070,240,0 chrXIV 629464 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.05;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1978,234,0 chrXIV 629853 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.459;QD=22.40;ReadPosRankSum=1.711;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3741,426,0 chrXIV 630600 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.030;QD=22.62;ReadPosRankSum=1.709;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3461,405,0 chrXIV 630899 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.14;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3283,360,0 chrXIV 631199 . G T 3109 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3142,360,0 chrXIV 631321 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.21;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2938,327,0 chrXIV 631514 . T A 2488 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.90;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2521,288,0 chrXIV 631593 . A G 1850 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.02;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1883,216,0 chrXIV 631772 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9553;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.88;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1723,198,0 chrXIV 631782 . G A 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.996;QD=21.25;ReadPosRankSum=1.342;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1733,192,0 chrXIV 631792 . T C 1642 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.52;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1675,192,0 chrXIV 631931 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;MQRankSum=1.404;QD=20.80;ReadPosRankSum=1.685;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1572,180,0 chrXIV 631936 . G C 1228 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=20.47;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1261,150,0 chrXIV 632080 . G C 1384 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.245;QD=21.62;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1417,165,0 chrXIV 632098 . C A 1134 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1167,132,0 chrXIV 632411 . G T 51.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=11;Dels=0.00;FS=9.542;HaplotypeScore=2.8735;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=2;MQRankSum=0.751;QD=4.72;ReadPosRankSum=-0.751;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:2,9:11:9:84,9,0 chrXIV 632467 . T A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=3.8567;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=3;MQRankSum=0.731;QD=2.97;ReadPosRankSum=-0.731;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:4,4:8:6:55,6,0 chrXIV 632944 . A G 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.4034;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.377;QD=22.50;ReadPosRankSum=1.710;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3532,402,0 chrXIV 633286 . G A 4998.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.36;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4998,546,0 chrXIV 633299 . T C 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=225;Dels=0.00;FS=3.049;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.077;QD=19.01;ReadPosRankSum=1.624;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4278,495,0 chrXIV 633306 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=19.72;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4062,462,0 chrXIV 634104 . G A 4713.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.33;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4713,513,0 chrXIV 634319 . T G 5263.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.05;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5263,600,0 chrXIV 634336 . C T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.58;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5043,582,0 chrXIV 634539 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.02;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4331,495,0 chrXIV 635324 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.0175;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.96;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3651,414,0 chrXIV 635347 . A C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.487;QD=21.65;ReadPosRankSum=1.687;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3334,387,0 chrXIV 635450 . A G 2540 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.48;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2573,294,0 chrXIV 635465 . T G 2611 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.56;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2644,300,0 chrXIV 635640 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.85;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1711,186,0 chrXIV 635788 . C G 1607 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=18.0761;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.09;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1640,189,0 chrXIV 635840 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.71;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1249,135,0 chrXIV 635844 . T C 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.371;QD=20.00;ReadPosRankSum=1.670;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1153,129,0 chrXIV 635919 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.88;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2039,222,0 chrXIV 635960 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.35;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2858,327,0 chrXIV 636137 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.8656;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.50;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4189,459,0 chrXIV 636275 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.201;QD=23.72;ReadPosRankSum=1.692;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4128,471,0 chrXIV 636384 . A T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.29;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3388,369,0 chrXIV 636388 . A G 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.534;QD=19.77;ReadPosRankSum=1.688;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3176,366,0 chrXIV 636460 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.804;QD=22.05;ReadPosRankSum=1.711;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3749,420,0 chrXIV 636563 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.77;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3899,432,0 chrXIV 637039 . T C 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=132;Dels=0.00;FS=8.849;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.573;QD=14.80;ReadPosRankSum=3.219;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:4,128:132:99:1986,225,0 chrXIV 637234 . T A 3131 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.45;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3164,357,0 chrXIV 637360 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2922,333,0 chrXIV 638010 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.64;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2566,285,0 chrXIV 638992 . A T 1880 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.74;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1913,213,0 chrXIV 639165 . T G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=2.654;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.218;QD=23.46;ReadPosRankSum=2.401;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3566,402,0 chrXIV 639551 . C A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.68;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3859,426,0 chrXIV 639881 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=4.068;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.428;QD=20.50;ReadPosRankSum=1.685;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3087,348,0 chrXIV 640136 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.58;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2765,303,0 chrXIV 640393 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=3.433;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.143;QD=21.94;ReadPosRankSum=1.714;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4256,480,0 chrXIV 640431 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.3295;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.070;QD=19.50;ReadPosRankSum=1.662;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2919,333,0 chrXIV 640932 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=193;Dels=0.00;FS=2.948;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.223;QD=23.30;ReadPosRankSum=2.411;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4497,525,0 chrXIV 641101 . C T 5103.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.28;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5103,576,0 chrXIV 641452 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=168;Dels=0.00;FS=3.602;HaplotypeScore=13.7414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.619;QD=20.24;ReadPosRankSum=1.690;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3400,407,0 chrXIV 641892 . A G 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.213;DP=215;Dels=0.00;FS=9.006;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.062;QD=21.65;ReadPosRankSum=3.394;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:4,208:215:99:4654,528,0 chrXIV 642424 . A G 2688 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2721,312,0 chrXIV 643151 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.71;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3604,417,0 chrXIV 643259 . C G 4050.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4050,468,0 chrXIV 643436 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=151;Dels=0.00;FS=2.599;HaplotypeScore=11.5318;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.187;QD=19.83;ReadPosRankSum=2.368;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3027,342,0 chrXIV 643842 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.4188;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.931;QD=21.29;ReadPosRankSum=1.709;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3205,366,0 chrXIV 643929 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.9460;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.70;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3312,372,0 chrXIV 643986 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.49;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2881,327,0 chrXIV 644061 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.75;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2341,261,0 chrXIV 644062 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=18.08;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2402,264,0 chrXIV 644228 . T C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;DP=145;Dels=0.00;FS=1.603;HaplotypeScore=123.1796;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=-0.094;QD=0.19;ReadPosRankSum=-3.757;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:139,6:145:57:57,0,214 chrXIV 644234 . T C 607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=165;Dels=0.00;FS=8.914;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.181;QD=3.68;ReadPosRankSum=3.194;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:75:640,75,0 chrXIV 644580 . C A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.04;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4375,483,0 chrXIV 644608 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.6986;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.17;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4102,450,0 chrXIV 645334 . A G 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.192;QD=21.48;ReadPosRankSum=1.673;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2568,288,0 chrXIV 645364 . G A 2333 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6917;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.21;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2366,264,0 chrXIV 645610 . T C 2153 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.20;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2186,249,0 chrXIV 646157 . A T 3113 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3146,357,0 chrXIV 646339 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.425;QD=23.14;ReadPosRankSum=1.667;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4905,570,0 chrXIV 646450 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=17.70;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3149,354,0 chrXIV 646471 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.548;QD=14.96;ReadPosRankSum=1.679;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:2966,351,0 chrXIV 646526 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=21.2501;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.25;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:3014,333,0 chrXIV 646547 . A C 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.080;DP=185;Dels=0.01;FS=10.180;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-1.633;QD=15.50;ReadPosRankSum=4.134;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:6,178:184:99:2901,330,0 chrXIV 646551 . C G 2798 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.27;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:2831,327,0 chrXIV 646799 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=4.545;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.010;QD=23.98;ReadPosRankSum=1.711;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4028,468,0 chrXIV 646869 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=163;Dels=0.00;FS=6.041;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.549;QD=21.24;ReadPosRankSum=2.908;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3462,408,0 chrXIV 647100 . G A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.99;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3884,447,0 chrXIV 647124 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.907;QD=20.36;ReadPosRankSum=1.709;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3047,351,0 chrXIV 647126 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.409;QD=19.79;ReadPosRankSum=1.709;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3001,351,0 chrXIV 647174 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.68;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1935,213,0 chrXIV 647181 . A G 1878 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=16.77;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:1911,219,0 chrXIV 647815 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.02;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3057,351,0 chrXIV 647821 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=158;Dels=0.00;FS=6.565;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.665;QD=18.51;ReadPosRankSum=2.403;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:2958,339,0 chrXIV 647950 . C T 4364.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.5039;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.98;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4364,477,0 chrXIV 648040 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.72;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3522,402,0 chrXIV 648085 . T C 4217.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.9182;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.96;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4217,489,0 chrXIV 648166 . T A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8458;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3501,390,0 chrXIV 648289 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=168;Dels=0.00;FS=6.583;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.841;QD=22.07;ReadPosRankSum=2.420;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3707,429,0 chrXIV 648473 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.14;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3054,330,0 chrXIV 648482 . A G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.174;QD=19.11;ReadPosRankSum=1.662;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2899,336,0 chrXIV 648754 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.91;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3013,342,0 chrXIV 648908 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.41;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2364,270,0 chrXIV 648982 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.29;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2478,282,0 chrXIV 649012 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.79;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3110,342,0 chrXIV 649267 . G A 5206.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.9134;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.34;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5206,582,0 chrXIV 649796 . A T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.4568;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.78;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4510,501,0 chrXIV 650366 . A C 5074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=226;Dels=0.00;FS=6.598;HaplotypeScore=15.4535;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.092;QD=22.45;ReadPosRankSum=2.428;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5074,597,0 chrXIV 650501 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.16;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4284,489,0 chrXIV 650568 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=223;Dels=0.00;FS=7.347;HaplotypeScore=11.4312;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.369;QD=21.11;ReadPosRankSum=2.328;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4708,537,0 chrXIV 650627 . T C 6593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=309;Dels=0.00;FS=8.671;HaplotypeScore=24.9823;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.589;QD=21.34;ReadPosRankSum=3.405;SB=-3.399e+03 GT:AD:DP:GQ:PL 1/1:4,305:309:99:6593,759,0 chrXIV 650666 . G A 7952.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=13.8187;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.46;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:0,351:354:99:7952,891,0 chrXIV 650687 . G A 8070.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=14.0968;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.93;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:0,366:368:99:8070,903,0 chrXIV 650921 . A G 5079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.498;DP=250;Dels=0.00;FS=2.319;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.631;QD=20.32;ReadPosRankSum=3.755;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:5,245:250:99:5079,576,0 chrXIV 650977 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=201;Dels=0.00;FS=2.492;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.005;QD=20.76;ReadPosRankSum=2.935;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4172,477,0 chrXIV 651098 . T C 3160 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0002;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.50;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3193,360,0 chrXIV 651281 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.57;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3476,378,0 chrXIV 651334 . G A 4577.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.90;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4577,507,0 chrXIV 651361 . A G 5187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=257;Dels=0.00;FS=2.888;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.388;QD=20.18;ReadPosRankSum=2.430;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:2,254:257:99:5187,591,0 chrXIV 651680 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.000;QD=20.65;ReadPosRankSum=1.492;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2718,315,0 chrXIV 651849 . C T 483 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=18.1148;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=2;QD=12.71;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:60:516,60,0 chrXIV 651900 . A T 489 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=15.28;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:60:522,60,0 chrXIV 651906 . A G 483 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=15.09;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:516,63,0 chrXIV 651930 . C T 537 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=13.10;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:66:570,66,0 chrXIV 651954 . T A 613 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=11.79;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:646,75,0 chrXIV 651963 . G A 459 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=9.98;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:54:492,54,0 chrXIV 652036 . C T 314 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=5.71;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:39:347,39,0 chrXIV 652121 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=17.62;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1584,174,0 chrXIV 652238 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=37.54;MQ0=0;QD=20.16;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1384,153,0 chrXIV 652261 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=18.33;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1151,129,0 chrXIV 652265 . T G 1218 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=16.92;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1251,147,0 chrXIV 652361 . G A 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;DP=60;Dels=0.00;FS=18.310;HaplotypeScore=30.1685;MLEAC=1;MLEAF=0.500;MQ=45.48;MQ0=0;MQRankSum=-0.372;QD=1.23;ReadPosRankSum=-1.767;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,15:60:99:104,0,476 chrXIV 652419 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.15;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1947,225,0 chrXIV 652476 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=61.15;MQ0=0;QD=24.11;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3810,432,0 chrXIV 652563 . G C 1481 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3521;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=11.39;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:1514,180,0 chrXIV 652628 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=6.485;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.946;QD=17.08;ReadPosRankSum=2.356;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:3176,357,0 chrXIV 652651 . A T 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=241;Dels=0.00;FS=3.120;HaplotypeScore=9.0286;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.472;QD=19.73;ReadPosRankSum=1.617;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:4755,525,0 chrXIV 653001 . C A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.4687;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.05;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4133,459,0 chrXIV 653115 . T G 2847 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.13;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2880,324,0 chrXIV 653354 . A G 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.890;HaplotypeScore=1.9336;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.404;QD=20.16;ReadPosRankSum=1.703;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2452,282,0 chrXIV 653365 . A G 2362 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.20;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2395,276,0 chrXIV 653385 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.24;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2361,267,0 chrXIV 653525 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.64;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2455,273,0 chrXIV 653557 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.37;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3217,360,0 chrXIV 653635 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=144;Dels=0.00;FS=6.004;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-2.289;QD=20.96;ReadPosRankSum=2.937;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3051,357,0 chrXIV 653665 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.2813;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.15;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3068,345,0 chrXIV 653791 . A G 3050 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.53;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3083,363,0 chrXIV 653800 . G C 3004 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.67;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3037,351,0 chrXIV 654088 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.730;QD=21.30;ReadPosRankSum=1.698;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4367,498,0 chrXIV 654166 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.00;FS=7.947;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.322;QD=21.09;ReadPosRankSum=2.408;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3817,438,0 chrXIV 654591 . A T 539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.897;DP=37;Dels=0.00;FS=2.434;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.795;QD=14.57;ReadPosRankSum=4.052;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:7,30:37:63:572,63,0 chrXIV 654799 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.8704;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.15;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1941,216,0 chrXIV 654835 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.810;QD=22.21;ReadPosRankSum=2.350;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2765,330,0 chrXIV 654949 . C T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=17.8922;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.75;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4371,486,0 chrXIV 655026 . C T 5118.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.9974;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.26;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5118,561,0 chrXIV 655138 . C T 5797.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.3242;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.38;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5797,633,0 chrXIV 655174 . T C 5523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=246;Dels=0.00;FS=3.028;HaplotypeScore=16.6474;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.599;QD=22.45;ReadPosRankSum=2.419;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:5523,633,0 chrXIV 655315 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=211;Dels=0.00;FS=3.003;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-1.682;QD=18.11;ReadPosRankSum=2.333;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:3821,444,0 chrXIV 655324 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.07;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4043,444,0 chrXIV 655865 . T G 4467.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3333;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.45;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4467,501,0 chrXIV 655912 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.95;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3690,423,0 chrXIV 655918 . A T 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=180;Dels=0.00;FS=5.899;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.760;QD=20.39;ReadPosRankSum=2.905;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3670,414,0 chrXIV 656020 . G A 4950.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=18.4775;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4950,564,0 chrXIV 656366 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=147;Dels=0.00;FS=9.776;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.465;QD=23.73;ReadPosRankSum=2.896;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:3489,396,0 chrXIV 656419 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.72;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2943,330,0 chrXIV 656425 . G C 2765 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.2859;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.33;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2798,321,0 chrXIV 656566 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.62;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3596,393,0 chrXIV 656674 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.88;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4141,477,0 chrXIV 656734 . G A 4356.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.05;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4356,480,0 chrXIV 656773 . A G 4451.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.0566;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.93;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4451,527,0 chrXIV 656839 . T C 5094.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.26;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5094,594,0 chrXIV 656962 . A T 5472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.9739;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.494;QD=23.49;ReadPosRankSum=1.687;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5472,606,0 chrXIV 657202 . C A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.60;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4023,447,0 chrXIV 657606 . A C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.298;QD=22.30;ReadPosRankSum=2.217;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:2,167:172:99:3835,441,0 chrXIV 657835 . C T 4676.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.8077;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.75;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4676,534,0 chrXIV 657871 . C T 5909.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=22.3563;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.12;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5909,651,0 chrXIV 657913 . C T 5719.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.4688;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.03;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5719,627,0 chrXIV 657946 . A G 5428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=233;Dels=0.00;FS=7.782;HaplotypeScore=14.9934;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.820;QD=23.30;ReadPosRankSum=2.386;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5428,603,0 chrXIV 658012 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.63;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4585,516,0 chrXIV 658267 . C A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.09;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3718,414,0 chrXIV 658306 . T A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.7411;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.36;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4142,450,0 chrXIV 658444 . C A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.01;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3429,390,0 chrXIV 658590 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.20;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3387,381,0 chrXIV 658624 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.01;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3554,393,0 chrXIV 658675 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.05;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2985,339,0 chrXIV 658677 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.22;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3032,333,0 chrXIV 658752 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.02;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3699,423,0 chrXIV 658765 . C T 4007.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.54;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4007,456,0 chrXIV 658861 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.3944;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.10;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3840,432,0 chrXIV 658915 . A G 5606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=246;Dels=0.00;FS=13.486;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.675;QD=22.79;ReadPosRankSum=3.390;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:4,242:246:99:5606,648,0 chrXIV 658984 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=198;Dels=0.00;FS=6.407;HaplotypeScore=13.9813;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.685;QD=19.85;ReadPosRankSum=2.425;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:3930,456,0 chrXIV 659022 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.3795;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.65;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4259,471,0 chrXIV 659350 . A G 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.028;QD=21.47;ReadPosRankSum=1.714;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4037,459,0 chrXIV 659362 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.49;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4148,459,0 chrXIV 659386 . A T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.56;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3872,447,0 chrXIV 659398 . A G 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.145;QD=19.23;ReadPosRankSum=1.715;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:3903,450,0 chrXIV 659794 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.40;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3719,423,0 chrXIV 659821 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.32;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3708,420,0 chrXIV 659878 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.7914;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.83;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3471,387,0 chrXIV 660538 . G A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.2611;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.83;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4208,492,0 chrXIV 660562 . G A 4222.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.10;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4222,492,0 chrXIV 660715 . G T 4948.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.40;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4948,564,0 chrXIV 660720 . G A 5130.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.93;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:5130,576,0 chrXIV 660793 . T C 6293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=307;Dels=0.00;FS=3.306;HaplotypeScore=19.2781;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.866;QD=20.50;ReadPosRankSum=1.686;SB=-3.540e+03 GT:AD:DP:GQ:PL 1/1:1,303:307:99:6293,714,0 chrXIV 661014 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.36;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4337,477,0 chrXIV 661923 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.60;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3102,357,0 chrXIV 661928 . G C 2990 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.28;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3023,339,0 chrXIV 661981 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.9899;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.18;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3855,423,0 chrXIV 662398 . C A 5050.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.1756;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.13;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5050,558,0 chrXIV 662512 . C A 2791 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=18.01;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2824,312,0 chrXIV 662522 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=17.68;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2455,273,0 chrXIV 662542 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=106.9080;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=17.78;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2273,249,0 chrXIV 662586 . A G 1910 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.9679;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=1;QD=18.19;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1943,225,0 chrXIV 662883 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.1519;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.38;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2553,282,0 chrXIV 662978 . T C 2924 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=15.31;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2957,345,0 chrXIV 662982 . A G 2720 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=14.39;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2753,309,0 chrXIV 663070 . T C 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=192;Dels=0.00;FS=2.892;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.555;QD=21.56;ReadPosRankSum=2.423;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:4140,462,0 chrXIV 663092 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.9529;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-1.386;QD=21.24;ReadPosRankSum=1.699;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4503,510,0 chrXIV 663970 . T C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.923;QD=22.27;ReadPosRankSum=1.700;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2416,276,0 chrXIV 663997 . T C 2620 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.7043;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.79;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2653,309,0 chrXIV 664058 . A C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.901;QD=19.16;ReadPosRankSum=1.692;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3353,393,0 chrXIV 664638 . C A 5027.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.64;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5027,558,0 chrXIV 664748 . G C 4566.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.54;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,207:212:99:4566,525,0 chrXIV 665017 . C G 1943 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.05;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1976,231,0 chrXIV 665036 . G T 1846 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.85;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1879,216,0 chrXIV 665064 . T A 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.627;QD=20.60;ReadPosRankSum=1.585;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1969,216,0 chrXIV 665097 . T A 1838 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.5574;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.89;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1871,204,0 chrXIV 665847 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6205;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.77;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3598,417,0 chrXIV 665889 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.00;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3344,360,0 chrXIV 665953 . C G 2633 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.7528;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=18.54;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:2666,312,0 chrXIV 665969 . A C 2745 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5924;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.20;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2778,312,0 chrXIV 666127 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.90;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3216,363,0 chrXIV 666697 . T C 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=188;Dels=0.00;FS=2.734;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.516;QD=23.55;ReadPosRankSum=2.423;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4427,504,0 chrXIV 667018 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.54;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4034,462,0 chrXIV 667216 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1904,213,0 chrXIV 667292 . G A 985 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1018,114,0 chrXIV 667364 . G A 518 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:24:63:551,63,0 chrXIV 667515 . C A 2268 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=23.87;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2301,255,0 chrXIV 667530 . T A 1987 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.28;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2020,237,0 chrXIV 667575 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.622;QD=19.52;ReadPosRankSum=1.597;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2531,288,0 chrXIV 667685 . T C 5081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.407;QD=22.48;ReadPosRankSum=1.717;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5081,582,0 chrXIV 667737 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.97;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4196,456,0 chrXIV 667749 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.83;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4083,444,0 chrXIV 667971 . T A 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=1.692;QD=22.35;ReadPosRankSum=1.611;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3844,426,0 chrXIV 668110 . A T 103.13 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=0.90;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:18:136,18,0 chrXIV 668126 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=17.56;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2105,237,0 chrXIV 668179 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.73;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2356,264,0 chrXIV 668185 . T C 2489 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.71;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2522,285,0 chrXIV 668321 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.06;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2362,261,0 chrXIV 668876 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.49;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3063,336,0 chrXIV 669030 . T C 3026 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3059,354,0 chrXIV 669132 . C A 2503 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.58;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2536,285,0 chrXIV 669273 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.3912;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.39;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2832,312,0 chrXIV 669563 . A G 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.148;QD=21.98;ReadPosRankSum=1.693;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,88:92:99:2055,234,0 chrXIV 669924 . G A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=21.94;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3664,402,0 chrXIV 669930 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=172;Dels=0.00;FS=3.021;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.065;QD=18.62;ReadPosRankSum=2.377;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:3236,378,0 chrXIV 669943 . T C 2983 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.00;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3016,354,0 chrXIV 669967 . A C 3412.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6935;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=18.25;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:3412,393,0 chrXIV 670173 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.5838;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.67;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2747,318,0 chrXIV 670266 . C T 4261.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4261,465,0 chrXIV 670369 . A G 2092 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.71;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2125,243,0 chrXIV 670370 . A G 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=102;Dels=0.00;FS=6.152;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.597;QD=20.59;ReadPosRankSum=2.401;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2133,240,0 chrXIV 670615 . C A 2154 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.06;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2187,246,0 chrXIV 670619 . T C 1995 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.47;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2028,228,0 chrXIV 671139 . A T 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.808;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.517;QD=22.58;ReadPosRankSum=1.711;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3636,402,0 chrXIV 671188 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.3031;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.577;QD=21.95;ReadPosRankSum=1.627;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3622,417,0 chrXIV 671317 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.91;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3460,396,0 chrXIV 671522 . C A 2936 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7263;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.12;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2969,321,0 chrXIV 671629 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.1075;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.30;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3868,432,0 chrXIV 671660 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.08;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3554,390,0 chrXIV 672220 . T C 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=111;Dels=0.00;FS=2.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.593;QD=20.79;ReadPosRankSum=2.315;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2341,267,0 chrXIV 672239 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.91;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2370,258,0 chrXIV 672281 . T C 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.409;QD=21.17;ReadPosRankSum=1.686;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1621,189,0 chrXIV 672679 . A C 2544 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.56;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2577,300,0 chrXIV 673093 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.51;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2643,294,0 chrXIV 673124 . A C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=112;Dels=0.00;FS=8.507;HaplotypeScore=6.8027;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.166;QD=21.15;ReadPosRankSum=2.383;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2402,276,0 chrXIV 673326 . C T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.79;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4423,486,0 chrXIV 674407 . T C 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=184;Dels=0.00;FS=2.947;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.795;QD=23.10;ReadPosRankSum=2.369;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4251,489,0 chrXIV 674690 . A G 2900 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.01;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2933,339,0 chrXIV 676029 . T G 896 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0519;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=13.78;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,64:65:99:929,108,0 chrXIV 676085 . G A 238 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=14.88;SB=-8.300e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:30:271,30,0 chrXIV 676368 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.403;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.138;QD=23.81;ReadPosRankSum=1.701;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2723,306,0 chrXIV 676470 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.43;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3102,342,0 chrXIV 676652 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.522;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.053;QD=23.02;ReadPosRankSum=1.664;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3522,402,0 chrXIV 676731 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.5583;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.02;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2697,294,0 chrXIV 676834 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.56;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4176,468,0 chrXIV 676905 . G A 2287 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.58;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2320,255,0 chrXIV 676917 . A C 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=115;Dels=0.00;FS=6.291;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.016;QD=20.42;ReadPosRankSum=2.407;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2381,270,0 chrXIV 677203 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.63;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3356,378,0 chrXIV 677207 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.29;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3376,369,0 chrXIV 677352 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.76;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2898,324,0 chrXIV 677422 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=21.41;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3138,348,0 chrXIV 677438 . T A 2897 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.12;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2930,321,0 chrXIV 677530 . G T 3035 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.08;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3068,336,0 chrXIV 677609 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.64;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2587,291,0 chrXIV 677649 . C G 2257 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.63;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2290,258,0 chrXIV 677799 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.267;HaplotypeScore=5.6743;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.438;QD=19.88;ReadPosRankSum=1.672;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3498,408,0 chrXIV 677807 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.38;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3506,384,0 chrXIV 677841 . A G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.587;QD=20.68;ReadPosRankSum=1.587;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2990,342,0 chrXIV 677903 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=165;Dels=0.00;FS=7.999;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.484;QD=21.90;ReadPosRankSum=2.360;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3613,423,0 chrXIV 677958 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.73;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3276,366,0 chrXIV 677964 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.59;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3007,342,0 chrXIV 677985 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.86;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2560,285,0 chrXIV 678027 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.46;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2468,273,0 chrXIV 678108 . T C 2607 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.69;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2640,300,0 chrXIV 678144 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.02;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2375,264,0 chrXIV 678306 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2354,261,0 chrXIV 678759 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2070,234,0 chrXIV 678891 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.65;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3551,414,0 chrXIV 679026 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=7.976;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.404;QD=21.30;ReadPosRankSum=2.411;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2759,315,0 chrXIV 679089 . G A 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=130;Dels=0.00;FS=3.004;HaplotypeScore=7.7119;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.047;QD=21.67;ReadPosRankSum=1.580;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2850,315,0 chrXIV 679239 . A C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=130;Dels=0.00;FS=10.179;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.586;QD=20.52;ReadPosRankSum=2.373;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2700,309,0 chrXIV 679560 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.365;DP=161;Dels=0.00;FS=2.466;HaplotypeScore=11.1973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.226;QD=19.24;ReadPosRankSum=0.189;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3130,331,0 chrXIV 680022 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=183;Dels=0.00;FS=2.581;HaplotypeScore=10.5963;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.720;QD=21.83;ReadPosRankSum=2.907;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:3995,465,0 chrXIV 680044 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=5.283;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.585;QD=22.68;ReadPosRankSum=1.695;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4286,498,0 chrXIV 680095 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.165;QD=19.62;ReadPosRankSum=1.697;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:3924,453,0 chrXIV 680099 . G A 3904.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.82;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3904,423,0 chrXIV 680684 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2197,246,0 chrXIV 681087 . A G 4824.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.3005;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.88;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4824,558,0 chrXIV 681117 . G A 4844.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.53;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4844,534,0 chrXIV 681312 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.24;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4230,477,0 chrXIV 681639 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=198;Dels=0.00;FS=5.390;HaplotypeScore=7.9740;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.985;QD=20.14;ReadPosRankSum=2.873;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:3988,456,0 chrXIV 682144 . A C 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.703;QD=21.55;ReadPosRankSum=1.703;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2619,300,0 chrXIV 682434 . A G 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=149;Dels=0.00;FS=3.738;HaplotypeScore=8.1453;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.105;QD=21.24;ReadPosRankSum=-0.825;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3198,372,0 chrXIV 682580 . A T 2828 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2861,315,0 chrXIV 682623 . A G 2510 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.46;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2543,288,0 chrXIV 682893 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.41;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1690,189,0 chrXIV 682898 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.44;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1852,204,0 chrXIV 683057 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6294;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.40;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2475,282,0 chrXIV 683106 . C A 1990 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.95;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2023,219,0 chrXIV 683187 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=17.16;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1869,216,0 chrXIV 683193 . G A 2052 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.65;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2085,228,0 chrXIV 683256 . A C 2732 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.24;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2765,324,0 chrXIV 683297 . A G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=124;Dels=0.00;FS=3.656;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.521;QD=22.42;ReadPosRankSum=1.704;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2813,324,0 chrXIV 683616 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2805,306,0 chrXIV 683679 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.559;QD=23.16;ReadPosRankSum=1.663;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2349,264,0 chrXIV 683709 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2249,252,0 chrXIV 683790 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.91;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2687,297,0 chrXIV 684087 . A G 2495 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.6265;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.54;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2528,291,0 chrXIV 684569 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=171;Dels=0.00;FS=7.671;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.918;QD=22.21;ReadPosRankSum=2.421;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3798,429,0 chrXIV 684656 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=164;Dels=0.00;FS=4.215;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.613;QD=20.33;ReadPosRankSum=1.646;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3334,378,0 chrXIV 684669 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=166;Dels=0.00;FS=9.490;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.369;QD=19.44;ReadPosRankSum=2.346;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3260,384,0 chrXIV 684891 . C T 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.900;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.1297;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.642;QD=20.35;ReadPosRankSum=-1.082;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:4477,496,0 chrXIV 684966 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=171;Dels=0.00;FS=2.624;HaplotypeScore=16.6992;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=2.013;QD=20.56;ReadPosRankSum=2.391;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:3515,405,0 chrXIV 685065 . A T 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.535;DP=131;Dels=0.00;FS=2.029;HaplotypeScore=6.4184;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-1.090;QD=19.84;ReadPosRankSum=2.361;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2632,270,0 chrXIV 685071 . A C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=134;Dels=0.00;FS=5.973;HaplotypeScore=4.7919;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.702;QD=18.54;ReadPosRankSum=1.741;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:3,129:134:99:2517,264,0 chrXIV 685080 . C G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5511;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.114;QD=18.25;ReadPosRankSum=-0.948;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2552,269,0 chrXIV 685773 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.93;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3263,372,0 chrXIV 685968 . C T 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=21.2392;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.459;QD=22.19;ReadPosRankSum=0.073;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4261,468,0 chrXIV 686126 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4157,468,0 chrXIV 686348 . A C 3911.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.10;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3911,441,0 chrXIV 686681 . T C 4230.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.62;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4230,498,0 chrXIV 686786 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.424;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.922;QD=21.37;ReadPosRankSum=1.665;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3291,384,0 chrXIV 686798 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5519;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=20.52;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3304,384,0 chrXIV 686916 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.59;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3660,402,0 chrXIV 687249 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=17.18;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2043,225,0 chrXIV 687406 . G C 2605 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.53;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2638,300,0 chrXIV 687495 . T G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.00;FS=3.008;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-2.064;QD=21.13;ReadPosRankSum=2.413;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2886,336,0 chrXIV 687661 . G A 5057.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.85;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5057,555,0 chrXIV 687788 . G A 5476.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.4213;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=23.30;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5476,586,0 chrXIV 687823 . A G 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=251;Dels=0.00;FS=2.991;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-1.677;QD=20.25;ReadPosRankSum=2.391;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5082,585,0 chrXIV 687829 . A G 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.972;DP=252;Dels=0.00;FS=5.773;HaplotypeScore=5.3386;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.947;QD=19.90;ReadPosRankSum=2.947;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:3,245:252:99:5014,576,0 chrXIV 687853 . C T 5355.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.83;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5355,600,0 chrXIV 688060 . A G 4950.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.60;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4950,576,0 chrXIV 688332 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3457,396,0 chrXIV 688466 . G C 3497.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.6645;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.27;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3497,399,0 chrXIV 688572 . C G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.8056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3489,399,0 chrXIV 689057 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3490,390,0 chrXIV 689582 . C G 4543.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.60;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4543,507,0 chrXIV 689683 . A G 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=177;Dels=0.00;FS=3.375;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.816;QD=22.73;ReadPosRankSum=1.712;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:4024,459,0 chrXIV 689743 . G A 4639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.4271;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=1.124;QD=22.52;ReadPosRankSum=-0.414;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4639,504,0 chrXIV 689791 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.713;QD=22.01;ReadPosRankSum=1.694;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4094,468,0 chrXIV 689944 . C G 2573 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.10;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2606,303,0 chrXIV 689964 . A C 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.322;QD=19.50;ReadPosRankSum=1.609;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2237,255,0 chrXIV 689969 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=12.788;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.604;QD=18.98;ReadPosRankSum=2.322;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2235,255,0 chrXIV 690061 . A T 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.445;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.660;QD=20.15;ReadPosRankSum=1.691;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1726,189,0 chrXIV 690162 . T G 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.408;QD=20.82;ReadPosRankSum=1.630;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1449,168,0 chrXIV 690208 . T A 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.748;QD=23.97;ReadPosRankSum=1.653;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2142,231,0 chrXIV 690310 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=16.8199;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.536;QD=23.93;ReadPosRankSum=1.707;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3350,384,0 chrXIV 690677 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=160;Dels=0.00;FS=2.607;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.209;QD=20.10;ReadPosRankSum=2.388;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3249,375,0 chrXIV 690896 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2565,294,0 chrXIV 691294 . A G 123.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.864;DP=98;Dels=0.00;FS=2.765;HaplotypeScore=86.5731;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=1.613;QD=1.26;ReadPosRankSum=-5.499;SB=2.87 GT:AD:DP:GQ:PL 1/1:85,13:98:18:156,18,0 chrXIV 691429 . T G 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=4.393;HaplotypeScore=62.5095;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.057;QD=20.43;ReadPosRankSum=1.687;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1606,183,0 chrXIV 691644 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.90;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2758,318,0 chrXIV 691738 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=157;Dels=0.00;FS=2.672;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.024;QD=23.84;ReadPosRankSum=2.418;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3743,426,0 chrXIV 691842 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.80;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3351,366,0 chrXIV 692051 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.66;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3383,372,0 chrXIV 692387 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7527;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.69;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2537,282,0 chrXIV 692612 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=14.2753;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.35;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2715,297,0 chrXIV 692624 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.89;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2359,279,0 chrXIV 692641 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.80;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2458,279,0 chrXIV 692704 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.5554;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.677;QD=21.20;ReadPosRankSum=0.791;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3255,372,0 chrXIV 692864 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.47;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2380,267,0 chrXIV 693046 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.04;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3051,336,0 chrXIV 693607 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3269,369,0 chrXIV 693964 . C T 4623.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.5368;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.44;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4623,534,0 chrXIV 694158 . T A 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=160;Dels=0.00;FS=6.990;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.386;QD=19.90;ReadPosRankSum=1.624;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3217,357,0 chrXIV 694257 . A G 95.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;DP=64;Dels=0.00;FS=4.800;HaplotypeScore=231.9620;MLEAC=1;MLEAF=0.500;MQ=30.31;MQ0=0;MQRankSum=0.872;QD=1.48;ReadPosRankSum=-4.182;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:53,11:64:56:125,0,56 chrXIV 694273 . T C 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.651;DP=85;Dels=0.00;FS=11.279;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;MQRankSum=-3.035;QD=12.11;ReadPosRankSum=3.539;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:5,80:85:99:1062,120,0 chrXIV 694294 . T C 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;MQRankSum=-1.732;QD=14.41;ReadPosRankSum=1.541;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1604,192,0 chrXIV 694332 . G C 2368 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=17.94;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2401,267,0 chrXIV 694337 . A G 2403 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=17.16;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2436,276,0 chrXIV 694347 . G C 2471 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.15;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2504,288,0 chrXIV 694712 . G C 4399.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.95;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4399,507,0 chrXIV 694785 . G A 2179 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6308;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.81;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2212,243,0 chrXIV 694868 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.16;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2339,261,0 chrXIV 695415 . A G 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=152;Dels=0.01;FS=2.570;HaplotypeScore=8.7560;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.195;QD=18.03;ReadPosRankSum=2.913;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:2773,324,0 chrXIV 695563 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1892;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.35;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3544,390,0 chrXIV 695572 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=162;Dels=0.00;FS=17.835;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-1.506;QD=19.07;ReadPosRankSum=3.405;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3123,363,0 chrXIV 695575 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=4.583;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-1.250;QD=19.29;ReadPosRankSum=1.710;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3081,360,0 chrXIV 695585 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.89;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3055,336,0 chrXIV 695662 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=160;Dels=0.00;FS=5.268;HaplotypeScore=12.4819;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-0.707;QD=21.43;ReadPosRankSum=3.403;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:4,155:160:99:3429,387,0 chrXIV 695748 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.3064;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.72;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4793,549,0 chrXIV 695861 . T C 1890 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=10.92;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:1923,216,0 chrXIV 695864 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=11.06;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:1936,228,0 chrXIV 695942 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=19.22;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3479,384,0 chrXIV 695952 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.4035;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.13;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3463,381,0 chrXIV 696037 . C G 2176 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=19.60;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2209,249,0 chrXIV 696044 . A G 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=2.802;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=1.174;QD=19.33;ReadPosRankSum=2.359;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2121,249,0 chrXIV 696194 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.40;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3075,336,0 chrXIV 696302 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.0928;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.90;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2946,324,0 chrXIV 696372 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.23;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3392,372,0 chrXIV 696443 . T A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.0253;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.04;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3733,417,0 chrXIV 696950 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2160;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.40;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2473,282,0 chrXIV 697059 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.50;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3022,327,0 chrXIV 697132 . A C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.22;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3466,399,0 chrXIV 697383 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.96;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3810,414,0 chrXIV 697404 . C T 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5671;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.362;QD=22.49;ReadPosRankSum=1.655;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3047,333,0 chrXIV 697427 . A G 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.279;QD=20.13;ReadPosRankSum=1.679;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2670,309,0 chrXIV 697660 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.32;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3940,444,0 chrXIV 697709 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.93;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3829,429,0 chrXIV 697900 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.5847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3828,429,0 chrXIV 698753 . A G 2962 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2995,345,0 chrXIV 699950 . C T 4778.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.8903;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.43;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4778,549,0 chrXIV 700166 . C T 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=154;Dels=0.00;FS=2.829;HaplotypeScore=16.4082;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=2.354;QD=20.17;ReadPosRankSum=-1.827;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3139,360,0 chrXIV 700405 . T A 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.273;QD=23.06;ReadPosRankSum=1.714;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4382,489,0 chrXIV 700427 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.981;QD=23.07;ReadPosRankSum=1.714;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4360,495,0 chrXIV 700610 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=19.37;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3486,396,0 chrXIV 700613 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.000;QD=18.84;ReadPosRankSum=1.693;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3334,390,0 chrXIV 700775 . C T 4829.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.46;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4829,537,0 chrXIV 701168 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=158;Dels=0.00;FS=2.918;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.000;QD=20.86;ReadPosRankSum=2.418;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3296,381,0 chrXIV 701450 . T C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.443;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.367;QD=15.23;ReadPosRankSum=1.714;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:2927,333,0 chrXIV 701567 . T A 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.912;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.779;QD=21.27;ReadPosRankSum=1.516;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3403,390,0 chrXIV 701618 . G T 3215 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=20.74;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3248,366,0 chrXIV 701689 . T C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.2277;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.323;QD=21.70;ReadPosRankSum=1.713;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3927,429,0 chrXIV 702515 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.542;QD=23.01;ReadPosRankSum=1.714;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4555,519,0 chrXIV 702719 . T C 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=235;Dels=0.00;FS=9.074;HaplotypeScore=16.9028;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.831;QD=20.78;ReadPosRankSum=3.423;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:4,230:235:99:4883,570,0 chrXIV 702909 . A G 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.031;DP=224;Dels=0.00;FS=10.782;HaplotypeScore=15.8489;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.467;QD=20.71;ReadPosRankSum=3.985;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:6,216:224:99:4640,531,0 chrXIV 702947 . A T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.11;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3914,429,0 chrXIV 702991 . A G 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=137;Dels=0.00;FS=2.794;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.583;QD=21.34;ReadPosRankSum=2.342;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2957,333,0 chrXIV 703080 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.77;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2588,285,0 chrXIV 703258 . C A 2123 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=21.02;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2156,237,0 chrXIV 703267 . A G 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=4.288;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=0.102;QD=19.31;ReadPosRankSum=1.698;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2003,234,0 chrXIV 703309 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=16.08;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1754,195,0 chrXIV 703315 . A G 1489 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=98;Dels=0.00;FS=10.601;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;MQRankSum=-2.743;QD=15.19;ReadPosRankSum=2.928;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1522,174,0 chrXIV 703322 . C T 1357 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=14.59;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1390,159,0 chrXIV 703323 . C A 1416 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=14.75;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1449,165,0 chrXIV 703330 . C T 1426 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;QD=14.12;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1459,168,0 chrXIV 703355 . C G 1892 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=16.31;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1925,219,0 chrXIV 703361 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=17.29;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1987,219,0 chrXIV 703460 . A C 3135 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=22.88;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3168,360,0 chrXIV 703536 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=22.45;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2750,309,0 chrXIV 703603 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.91;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2851,321,0 chrXIV 703668 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=159;Dels=0.00;FS=7.161;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-1.553;QD=21.82;ReadPosRankSum=2.341;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3470,402,0 chrXIV 703674 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.888;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.232;QD=21.92;ReadPosRankSum=1.711;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3616,417,0 chrXIV 703883 . G A 5927.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.45;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,258:264:99:5927,646,0 chrXIV 703917 . G A 5733.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.67;SB=-3.708e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:5733,663,0 chrXIV 703938 . T C 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=302;Dels=0.00;FS=7.178;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.134;QD=17.65;ReadPosRankSum=2.392;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:2,299:302:99:5329,621,0 chrXIV 703949 . G C 5771.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=9.2307;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.26;SB=-3.392e+03 GT:AD:DP:GQ:PL 1/1:0,314:316:99:5771,654,0 chrXIV 704094 . T C 6507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=314;Dels=0.00;FS=3.052;HaplotypeScore=9.4595;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;MQRankSum=-0.094;QD=20.72;ReadPosRankSum=1.699;SB=-3.604e+03 GT:AD:DP:GQ:PL 1/1:1,312:314:99:6507,738,0 chrXIV 704114 . C G 6394.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=1;QD=21.10;SB=-3.606e+03 GT:AD:DP:GQ:PL 1/1:0,296:303:99:6394,732,0 chrXIV 704271 . A C 3473.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0632;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;MQRankSum=-2.313;QD=16.62;ReadPosRankSum=2.543;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:3473,405,0 chrXIV 704274 . T A 3270.01 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8432;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=17.58;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3270,378,0 chrXIV 704275 . C T 3198 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.8498;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;MQRankSum=1.351;QD=17.48;ReadPosRankSum=-0.952;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3231,345,0 chrXIV 704280 . C T 3220.05 SnpCluster AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.8449;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=17.22;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3253,366,0 chrXIV 704283 . T A 3077 SnpCluster AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=16.37;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3110,348,0 chrXIV 704296 . C T 1851.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;DP=196;Dels=0.00;FS=18.482;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=1;MQRankSum=1.690;QD=9.44;ReadPosRankSum=5.146;SB=-4.040e+02 GT:AD:DP:GQ:PL 0/1:57,139:196:99:1881,0,167 chrXIV 704325 . G A 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=1;MQRankSum=-0.771;QD=10.51;ReadPosRankSum=1.552;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:1,173:174:99:1861,213,0 chrXIV 704334 . C A 1806 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=28.1194;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=1;MQRankSum=0.861;QD=11.01;ReadPosRankSum=1.286;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,163:164:99:1839,213,0 chrXIV 704337 . A C,T 1569.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.652;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2681;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.13;MQ0=1;MQRankSum=0.028;QD=9.99;ReadPosRankSum=3.302;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/2:4,39,114:157:99:1629,1353,1317,276,0,102 chrXIV 704338 . T C 1261.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.620;DP=155;Dels=0.00;FS=5.084;HaplotypeScore=27.5994;MLEAC=1;MLEAF=0.500;MQ=27.10;MQ0=1;MQRankSum=-1.193;QD=8.14;ReadPosRankSum=2.807;SB=-4.360e+02 GT:AD:DP:GQ:PL 0/1:24,131:155:99:1291,0,131 chrXIV 704343 . T C 1286.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.592;DP=172;Dels=0.00;FS=67.822;HaplotypeScore=31.9388;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=1;MQRankSum=-0.295;QD=7.48;ReadPosRankSum=-2.086;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:44,128:172:99:1316,0,111 chrXIV 704346 . G T 1287.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DP=182;Dels=0.00;FS=35.595;HaplotypeScore=31.9346;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=1;MQRankSum=1.149;QD=7.07;ReadPosRankSum=-2.396;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:39,142:182:81:1317,0,81 chrXIV 704352 . T C 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;DP=198;Dels=0.00;FS=30.216;HaplotypeScore=6.3204;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=1;MQRankSum=3.373;QD=0.22;ReadPosRankSum=1.824;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:159,39:198:74:74,0,1303 chrXIV 704355 . C A 55.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.085;DP=198;Dels=0.00;FS=30.216;HaplotypeScore=2.9677;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=1;MQRankSum=3.655;QD=0.28;ReadPosRankSum=1.742;SB=-1.630e+02 GT:AD:DP:GQ:PL 0/1:159,39:198:85:85,0,1452 chrXIV 704358 . A T 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;DP=199;Dels=0.00;FS=30.362;HaplotypeScore=3.9509;MLEAC=1;MLEAF=0.500;MQ=27.62;MQ0=1;MQRankSum=3.826;QD=0.24;ReadPosRankSum=1.070;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:160,39:199:77:77,0,1519 chrXIV 704367 . G A,T 1637.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.486;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.59;MQ0=1;MQRankSum=-1.147;QD=8.99;ReadPosRankSum=-0.183;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/2:2,142,38:182:80:1697,251,80,1428,0,1412 chrXIV 704376 . A C 70.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;DP=166;Dels=0.01;FS=35.160;HaplotypeScore=88.8163;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=1;MQRankSum=0.546;QD=0.42;ReadPosRankSum=-6.468;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:132,33:165:99:100,0,1202 chrXIV 704379 . T C 763.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;DP=135;Dels=0.00;FS=54.512;HaplotypeScore=43.3558;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=1;MQRankSum=2.632;QD=5.65;ReadPosRankSum=5.792;SB=-7.400e+02 GT:AD:DP:GQ:PL 0/1:47,84:135:99:793,0,375 chrXIV 704385 . T C 245.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.607;DP=167;Dels=0.00;FS=63.294;HaplotypeScore=133.8415;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=0;MQRankSum=1.795;QD=1.47;ReadPosRankSum=-0.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,33:167:99:275,0,943 chrXIV 704388 . G T 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;DP=150;Dels=0.00;FS=48.985;HaplotypeScore=119.8760;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=0.210;QD=0.97;ReadPosRankSum=-6.645;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,31:150:99:176,0,639 chrXIV 704394 . C T 372.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DP=147;Dels=0.00;FS=0.617;HaplotypeScore=62.1153;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=-0.722;QD=2.53;ReadPosRankSum=-7.970;SB=-5.720e+02 GT:AD:DP:GQ:PL 0/1:66,81:147:99:402,0,517 chrXIV 704400 . T C 321.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;DP=140;Dels=0.00;FS=4.140;HaplotypeScore=24.8903;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=-1.712;QD=2.29;ReadPosRankSum=-6.020;SB=-7.310e+02 GT:AD:DP:GQ:PL 0/1:61,71:140:99:351,0,533 chrXIV 704401 . T C 315.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;DP=139;Dels=0.00;FS=7.629;HaplotypeScore=25.8568;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=1.001;QD=2.27;ReadPosRankSum=-3.537;SB=-7.090e+02 GT:AD:DP:GQ:PL 0/1:68,71:139:99:345,0,636 chrXIV 704408 . T C 864 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.353;DP=136;Dels=0.00;FS=3.039;HaplotypeScore=5.7162;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;MQRankSum=1.275;QD=6.35;ReadPosRankSum=1.618;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:83:897,83,0 chrXIV 704409 . G T 360.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.865;DP=137;Dels=0.00;FS=0.650;HaplotypeScore=5.7162;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=0;MQRankSum=2.157;QD=2.63;ReadPosRankSum=0.923;SB=-4.350e+02 GT:AD:DP:GQ:PL 0/1:87,50:137:99:390,0,327 chrXIV 704415 . C T 275.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;DP=146;Dels=0.00;FS=2.157;HaplotypeScore=16.4726;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=0;MQRankSum=1.672;QD=1.88;ReadPosRankSum=-5.446;SB=-2.890e+02 GT:AD:DP:GQ:PL 0/1:92,54:146:99:305,0,362 chrXIV 704418 . A C 289.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245;DP=149;Dels=0.00;FS=3.982;HaplotypeScore=23.4222;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=0;MQRankSum=0.349;QD=1.94;ReadPosRankSum=-6.506;SB=-4.480e+02 GT:AD:DP:GQ:PL 0/1:95,54:149:99:319,0,447 chrXIV 704421 . T C 202.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=147;Dels=0.00;FS=2.390;HaplotypeScore=31.5401;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=0;MQRankSum=0.220;QD=1.37;ReadPosRankSum=-6.379;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:99,41:147:99:232,0,465 chrXIV 704422 . T C 226.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;DP=153;Dels=0.00;FS=0.669;HaplotypeScore=35.5183;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=0;MQRankSum=0.746;QD=1.48;ReadPosRankSum=-5.386;SB=-3.270e+02 GT:AD:DP:GQ:PL 0/1:111,42:153:99:256,0,476 chrXIV 704423 . C T 193.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;DP=155;Dels=0.00;FS=0.677;HaplotypeScore=37.4788;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.241;QD=1.25;ReadPosRankSum=-5.284;SB=-3.140e+02 GT:AD:DP:GQ:PL 0/1:114,41:155:99:223,0,526 chrXIV 704430 . T A 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DP=176;Dels=0.00;FS=16.100;HaplotypeScore=54.1614;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=0;MQRankSum=2.054;QD=1.02;ReadPosRankSum=-4.339;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,29:176:99:209,0,866 chrXIV 704439 . A C 586.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.063;DP=175;Dels=0.00;FS=5.910;HaplotypeScore=31.2690;MLEAC=1;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=-0.474;QD=3.35;ReadPosRankSum=8.008;SB=-9.170e+02 GT:AD:DP:GQ:PL 0/1:58,116:175:99:616,0,437 chrXIV 704442 . C T 469.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.378;DP=186;Dels=0.00;FS=8.265;HaplotypeScore=31.6664;MLEAC=1;MLEAF=0.500;MQ=31.06;MQ0=0;MQRankSum=1.792;QD=2.52;ReadPosRankSum=-6.152;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:128,58:186:99:499,0,670 chrXIV 704444 . A C,T 1240.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.8690;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.40;MQ0=0;QD=6.49;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/2:0,62,129:191:99:1300,746,671,554,0,455 chrXIV 704448 . T C 267.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660;DP=224;Dels=0.00;FS=94.797;HaplotypeScore=59.1582;MLEAC=1;MLEAF=0.500;MQ=31.26;MQ0=0;MQRankSum=2.515;QD=1.19;ReadPosRankSum=-3.245;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,51:224:99:297,0,1028 chrXIV 704453 . C A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.886;DP=262;Dels=0.00;FS=59.606;HaplotypeScore=73.5262;MLEAC=1;MLEAF=0.500;MQ=30.74;MQ0=0;MQRankSum=1.089;QD=0.15;ReadPosRankSum=1.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,27:262:69:69,0,1440 chrXIV 704459 . C T 640.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.439;DP=291;Dels=0.00;FS=24.332;HaplotypeScore=37.0671;MLEAC=1;MLEAF=0.500;MQ=30.44;MQ0=0;MQRankSum=0.437;QD=2.20;ReadPosRankSum=1.841;SB=-8.230e+02 GT:AD:DP:GQ:PL 0/1:140,151:291:99:670,0,1325 chrXIV 704472 . G A 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=7.637;DP=292;Dels=0.00;FS=50.764;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;MQRankSum=-0.036;QD=8.23;ReadPosRankSum=-5.921;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:27,265:292:58:2437,58,0 chrXIV 704490 . C T 786.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.609;DP=245;Dels=0.00;FS=173.530;HaplotypeScore=96.5945;MLEAC=1;MLEAF=0.500;MQ=31.04;MQ0=0;MQRankSum=1.562;QD=3.21;ReadPosRankSum=-1.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,114:245:99:816,0,1283 chrXIV 704495 . C A 465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.766;DP=241;Dels=0.00;FS=111.131;HaplotypeScore=149.0980;MLEAC=1;MLEAF=0.500;MQ=31.10;MQ0=0;MQRankSum=0.505;QD=1.93;ReadPosRankSum=-1.446;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,83:241:99:495,0,1583 chrXIV 704514 . A G 506.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.544;DP=215;Dels=0.00;FS=152.972;HaplotypeScore=88.3181;MLEAC=1;MLEAF=0.500;MQ=31.35;MQ0=0;MQRankSum=1.702;QD=2.35;ReadPosRankSum=-2.042;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,86:215:99:536,0,1271 chrXIV 704526 . T C 266.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.387;DP=187;Dels=0.00;FS=92.924;HaplotypeScore=102.4237;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=0;MQRankSum=1.265;QD=1.42;ReadPosRankSum=4.248;SB=-4.210e+02 GT:AD:DP:GQ:PL 0/1:120,66:187:99:296,0,1273 chrXIV 704532 . T C 410.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.915;DP=164;Dels=0.00;FS=3.031;HaplotypeScore=162.2117;MLEAC=1;MLEAF=0.500;MQ=29.01;MQ0=0;MQRankSum=-3.587;QD=2.50;ReadPosRankSum=-0.670;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:132,32:164:99:440,0,886 chrXIV 704535 . T G 563.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DP=137;Dels=0.00;FS=9.958;HaplotypeScore=205.6429;MLEAC=1;MLEAF=0.500;MQ=29.02;MQ0=0;MQRankSum=2.081;QD=4.11;ReadPosRankSum=3.245;SB=-3.960e+02 GT:AD:DP:GQ:PL 0/1:59,77:137:99:593,0,617 chrXIV 704537 . A C 1249.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.148;DP=137;Dels=0.00;FS=16.172;HaplotypeScore=68.0211;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;MQRankSum=0.018;QD=9.12;ReadPosRankSum=-0.632;SB=-5.655e+02 GT:AD:DP:GQ:PL 1/1:33,104:137:2:1279,2,0 chrXIV 704541 . T C 526.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;DP=128;Dels=0.00;FS=23.699;HaplotypeScore=70.7937;MLEAC=1;MLEAF=0.500;MQ=28.36;MQ0=0;MQRankSum=2.152;QD=4.11;ReadPosRankSum=0.329;SB=-3.340e+02 GT:AD:DP:GQ:PL 0/1:61,67:128:99:556,0,554 chrXIV 704544 . T A,C 846.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.7255;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.64;MQ0=0;QD=8.46;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/2:0,53,47:100:99:906,444,387,461,0,396 chrXIV 704547 . T A 213.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;DP=77;Dels=0.00;FS=43.715;HaplotypeScore=21.7507;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=0;MQRankSum=-0.359;QD=2.77;ReadPosRankSum=5.441;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,37:77:99:243,0,171 chrXIV 704548 . G C,T 404.06 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.58;MQ0=0;QD=5.86;SB=-1.591e+02 GT:AD:DP:GQ:PL 1/2:0,10,59:69:46:464,371,359,94,0,46 chrXIV 704553 . C T 407 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=4.90;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:51:440,51,0 chrXIV 704556 . C G 257.03 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=0;QD=2.86;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:90:36:290,36,0 chrXIV 704559 . T A 405 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7271;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;MQRankSum=-0.242;QD=4.71;ReadPosRankSum=1.692;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:54:438,54,0 chrXIV 704562 . C T 374.33 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=92;Dels=0.00;FS=15.426;HaplotypeScore=5.6739;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=2.075;QD=4.07;ReadPosRankSum=1.861;SB=-2.893e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:14:407,14,0 chrXIV 704565 . T A 480 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.117;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2512;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;MQRankSum=0.458;QD=5.05;ReadPosRankSum=2.756;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:60:513,60,0 chrXIV 704569 . T C 405.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.256;DP=100;Dels=0.00;FS=14.071;HaplotypeScore=14.4942;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=1.977;QD=4.05;ReadPosRankSum=1.554;SB=-3.882e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:17:438,17,0 chrXIV 704572 . T A 571 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.858;DP=103;Dels=0.00;FS=6.326;HaplotypeScore=13.7055;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;MQRankSum=-1.732;QD=5.54;ReadPosRankSum=1.463;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:69:604,69,0 chrXIV 704573 . A G 555 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.599;DP=104;Dels=0.00;FS=6.191;HaplotypeScore=15.6523;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;MQRankSum=-1.732;QD=5.34;ReadPosRankSum=1.432;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:69:588,69,0 chrXIV 704577 . A G 857 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.384;DP=145;Dels=0.00;FS=33.004;HaplotypeScore=16.5997;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;MQRankSum=3.073;QD=5.91;ReadPosRankSum=2.233;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:6,133:145:99:890,108,0 chrXIV 704583 . T C 1225 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.920;DP=166;Dels=0.00;FS=58.339;HaplotypeScore=32.9590;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=0;MQRankSum=5.210;QD=7.38;ReadPosRankSum=1.107;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:12,154:166:99:1258,100,0 chrXIV 704691 . T C 5349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=257;Dels=0.00;FS=8.959;HaplotypeScore=17.6242;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-1.230;QD=20.81;ReadPosRankSum=3.332;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:4,253:257:99:5349,624,0 chrXIV 704786 . T C 6130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=315;Dels=0.00;FS=9.453;HaplotypeScore=25.1496;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=-0.850;QD=19.46;ReadPosRankSum=2.914;SB=-3.715e+03 GT:AD:DP:GQ:PL 1/1:3,312:315:99:6130,714,0 chrXIV 704856 . T G 6519.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=16.6895;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.80;SB=-3.165e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6519,764,0 chrXIV 704975 . G A 6416.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=23.08;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6416,702,0 chrXIV 705005 . C A 6312.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=22.71;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6312,696,0 chrXIV 705188 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.4119;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=16.11;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3334,366,0 chrXIV 705191 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=15.95;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3223,357,0 chrXIV 705204 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=13.97;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:2758,312,0 chrXIV 705208 . A T 2825 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.39;MQ0=0;QD=13.78;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:2858,312,0 chrXIV 705221 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=11.94;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:2493,276,0 chrXIV 705227 . T A 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=209;Dels=0.00;FS=6.339;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;MQRankSum=-1.709;QD=11.26;ReadPosRankSum=2.391;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:2387,264,0 chrXIV 705315 . G A 5923.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.69;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5923,660,0 chrXIV 705401 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.7870;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;MQRankSum=-0.747;QD=20.10;ReadPosRankSum=1.716;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4401,501,0 chrXIV 705451 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=215;Dels=0.00;FS=8.898;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=-2.286;QD=16.66;ReadPosRankSum=2.377;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:4,207:215:99:3582,393,0 chrXIV 705452 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=213;Dels=0.02;FS=5.986;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;MQRankSum=-1.179;QD=16.30;ReadPosRankSum=2.860;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:3472,402,0 chrXIV 705531 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=3.103;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.018;QD=19.64;ReadPosRankSum=1.714;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:3770,432,0 chrXIV 705551 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;QD=18.26;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:3907,432,0 chrXIV 705568 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=15.70;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3406,387,0 chrXIV 705570 . C A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=16.43;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3500,396,0 chrXIV 705599 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;MQRankSum=-0.234;QD=15.11;ReadPosRankSum=1.719;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:4018,462,0 chrXIV 705627 . G A 3994.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=14.68;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:3994,444,0 chrXIV 705631 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=270;Dels=0.00;FS=10.847;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=-1.086;QD=13.98;ReadPosRankSum=2.929;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:3,267:270:99:3774,438,0 chrXIV 705671 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.56;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:3494,399,0 chrXIV 705870 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.56;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2539,294,0 chrXIV 706438 . A G 5580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=246;Dels=0.00;FS=9.138;HaplotypeScore=17.7182;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.865;QD=22.68;ReadPosRankSum=2.963;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:3,242:246:99:5580,633,0 chrXIV 706575 . A T 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.2806;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.553;QD=21.13;ReadPosRankSum=1.689;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5093,555,0 chrXIV 706586 . G A 4989.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.8832;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.87;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4989,558,0 chrXIV 706714 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.03;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3425,375,0 chrXIV 706720 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.313;QD=16.61;ReadPosRankSum=1.675;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3073,354,0 chrXIV 707000 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9209;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.42;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2926,324,0 chrXIV 707011 . G C 2404 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.81;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2437,282,0 chrXIV 707029 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=17.26;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2122,246,0 chrXIV 707187 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.87;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3509,384,0 chrXIV 707332 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.535;QD=17.99;ReadPosRankSum=1.711;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2966,339,0 chrXIV 707352 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.32;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3220,351,0 chrXIV 707540 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.48;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3023,333,0 chrXIV 707593 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.78;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3017,333,0 chrXIV 707734 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.05;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3682,426,0 chrXIV 707760 . T C 3188 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=17.81;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3221,372,0 chrXIV 707765 . A G 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=11.254;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-0.564;QD=16.92;ReadPosRankSum=2.396;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3163,369,0 chrXIV 708561 . C G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=172;Dels=0.00;FS=3.088;HaplotypeScore=9.8086;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.994;QD=21.53;ReadPosRankSum=-0.256;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3703,426,0 chrXIV 708708 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.4869;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.81;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4210,480,0 chrXIV 708768 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=167;Dels=0.00;FS=3.254;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.682;QD=21.95;ReadPosRankSum=1.711;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3666,402,0 chrXIV 708792 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.60;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3523,405,0 chrXIV 708870 . C T 4752.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.1763;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.76;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4752,525,0 chrXIV 708963 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.29;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4449,489,0 chrXIV 709011 . A G 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=200;Dels=0.00;FS=3.016;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.643;QD=22.21;ReadPosRankSum=2.326;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4441,495,0 chrXIV 709062 . A T 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=203;Dels=0.00;FS=2.917;HaplotypeScore=9.9246;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.647;QD=21.56;ReadPosRankSum=2.377;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4376,480,0 chrXIV 709119 . G T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.4304;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.07;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3898,432,0 chrXIV 709245 . G A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.06;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3623,393,0 chrXIV 709248 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.79;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3189,372,0 chrXIV 709317 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=18.82;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2574,291,0 chrXIV 709675 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.49;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4183,468,0 chrXIV 709827 . A G 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.907;QD=19.62;ReadPosRankSum=1.650;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2505,294,0 chrXIV 709906 . T C 1704 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2672;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.53;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1737,195,0 chrXIV 709959 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.68;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1548,180,0 chrXIV 710457 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.04;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3328,363,0 chrXIV 710643 . C A 2805 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.04;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2838,318,0 chrXIV 710649 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.49;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2742,312,0 chrXIV 711253 . T A 63.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.665;DP=74;Dels=0.00;FS=3.669;HaplotypeScore=76.2427;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-1.459;QD=0.86;ReadPosRankSum=-2.789;SB=2.49 GT:AD:DP:GQ:PL 1/1:67,7:74:12:96,12,0 chrXIV 711470 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.27;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2550,285,0 chrXIV 711643 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.989;QD=22.26;ReadPosRankSum=1.698;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4608,525,0 chrXIV 711951 . G A 6167.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.18;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6167,687,0 chrXIV 711992 . A G 5141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.449;QD=20.98;ReadPosRankSum=1.690;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5141,600,0 chrXIV 712028 . A T 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.630;DP=220;Dels=0.00;FS=2.576;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.206;QD=21.19;ReadPosRankSum=2.941;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:4662,537,0 chrXIV 712211 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=4.445;HaplotypeScore=13.1838;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.534;QD=23.33;ReadPosRankSum=1.714;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4503,507,0 chrXIV 712253 . A G 5122.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.7016;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.43;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5122,603,0 chrXIV 712295 . A G 5404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=261;Dels=0.00;FS=6.138;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.067;QD=20.71;ReadPosRankSum=2.421;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:5404,624,0 chrXIV 712301 . T C 5229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.637;QD=20.43;ReadPosRankSum=1.718;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5229,600,0 chrXIV 712325 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.79;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4228,480,0 chrXIV 712490 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=202;Dels=0.00;FS=2.556;HaplotypeScore=8.7093;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.090;QD=22.07;ReadPosRankSum=2.916;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4459,522,0 chrXIV 712646 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.504;QD=23.43;ReadPosRankSum=1.658;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3303,375,0 chrXIV 712954 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.46;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3425,378,0 chrXIV 713149 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.35;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3357,375,0 chrXIV 713219 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.27;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3268,357,0 chrXIV 713226 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.042;QD=17.81;ReadPosRankSum=2.394;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3238,369,0 chrXIV 713292 . C T 4410.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.61;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4410,495,0 chrXIV 713326 . A C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=187;Dels=0.00;FS=2.736;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.538;QD=20.61;ReadPosRankSum=2.410;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:3854,453,0 chrXIV 713366 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.17;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2582,288,0 chrXIV 713401 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=108;Dels=0.00;FS=7.778;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.541;QD=22.66;ReadPosRankSum=2.404;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2480,279,0 chrXIV 713685 . T G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=4.132;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.657;QD=22.09;ReadPosRankSum=1.684;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3258,384,0 chrXIV 713717 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.06;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2524,285,0 chrXIV 713741 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.40;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2373,261,0 chrXIV 713775 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.27;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2245,246,0 chrXIV 713783 . C G 2106 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.06;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2139,249,0 chrXIV 713826 . T C 2086 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.65;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2119,246,0 chrXIV 714025 . C A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.1861;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.06;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3575,396,0 chrXIV 714672 . C G 3519.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.27;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3519,411,0 chrXIV 716055 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.23;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2016,231,0 chrXIV 716065 . A G 1857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=96;Dels=0.00;FS=3.649;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.529;QD=19.34;ReadPosRankSum=1.623;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1890,216,0 chrXIV 716316 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=12.7573;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=24.18;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2161,237,0 chrXIV 716325 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.62;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2017,222,0 chrXIV 716448 . G A 860 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.92;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:893,105,0 chrXIV 716522 . T C 555 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=19.14;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:66:588,66,0 chrXIV 716564 . G A 445 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.54;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:54:478,54,0 chrXIV 716700 . T G 350 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=15.22;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:45:383,45,0 chrXIV 716912 . T C 1381 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=24.23;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1414,162,0 chrXIV 716972 . A G 2002 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.49;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2035,231,0 chrXIV 716990 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.24;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2194,240,0 chrXIV 717023 . A G 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=102;Dels=0.00;FS=3.033;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.938;QD=20.53;ReadPosRankSum=2.352;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2127,246,0 chrXIV 717080 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.05;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2436,267,0 chrXIV 717110 . T C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=116;Dels=0.00;FS=3.036;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=1.644;QD=20.97;ReadPosRankSum=1.516;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2466,282,0 chrXIV 717134 . A G 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=110;Dels=0.00;FS=3.424;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.598;QD=18.70;ReadPosRankSum=1.701;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2090,246,0 chrXIV 717218 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.3915;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.29;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2673,300,0 chrXIV 717379 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=3.043;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=0.630;QD=18.80;ReadPosRankSum=2.330;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2345,267,0 chrXIV 717380 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.84;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2350,270,0 chrXIV 717507 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.89;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4450,516,0 chrXIV 717528 . T A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.68;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4287,471,0 chrXIV 717731 . C A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.60;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3296,366,0 chrXIV 717758 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.233;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-1.407;QD=17.99;ReadPosRankSum=1.710;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2912,339,0 chrXIV 717819 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.10;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3734,423,0 chrXIV 717904 . A G 2851 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.63;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2884,324,0 chrXIV 718484 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.66;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1451,168,0 chrXIV 718496 . A G 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0875;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.421;QD=19.41;ReadPosRankSum=-0.666;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1586,180,0 chrXIV 718667 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.40;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2027,225,0 chrXIV 718741 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.18;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2003,231,0 chrXIV 719073 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.73;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3034,336,0 chrXIV 719099 . C G 2485 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.71;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2518,294,0 chrXIV 719201 . A C 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=97;Dels=0.00;FS=5.564;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=2.323;QD=23.40;ReadPosRankSum=2.824;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2303,264,0 chrXIV 719586 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.53;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3378,387,0 chrXIV 719595 . G A 3064 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.03;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3097,339,0 chrXIV 719790 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.90;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4419,489,0 chrXIV 719815 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=3.362;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.086;QD=21.45;ReadPosRankSum=1.678;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4162,486,0 chrXIV 719946 . G A 5221.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.85;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5221,597,0 chrXIV 719952 . G A 4957.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.74;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4957,570,0 chrXIV 720135 . T C 5668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=251;Dels=0.00;FS=10.644;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=1.719;QD=22.58;ReadPosRankSum=2.972;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:3,247:251:99:5668,642,0 chrXIV 720527 . T G 3057 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=20.38;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3090,360,0 chrXIV 720829 . A G 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=69;Dels=0.00;FS=2.999;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.234;QD=21.41;ReadPosRankSum=2.343;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1510,174,0 chrXIV 720905 . C T 1053 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1086,117,0 chrXIV 721603 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.91;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3287,381,0 chrXIV 721750 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.51;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2399,276,0 chrXIV 721786 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=69.0353;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=17.99;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1814,204,0 chrXIV 721832 . T C 1431 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.01;FS=8.016;HaplotypeScore=10.5333;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=1.231;QD=18.58;ReadPosRankSum=1.687;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1464,171,0 chrXIV 721833 . C G 1470 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.01;FS=8.016;HaplotypeScore=9.5501;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=0.912;QD=19.09;ReadPosRankSum=1.687;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1503,171,0 chrXIV 721842 . T G 1351 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.03;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1384,159,0 chrXIV 721994 . A G 1825 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=25.00;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1858,213,0 chrXIV 722023 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=25.21;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1848,207,0 chrXIV 722083 . G T 1481 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=23.89;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1514,168,0 chrXIV 722238 . A T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.686;DP=111;Dels=0.00;FS=9.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.82;MQ0=0;MQRankSum=0.933;QD=0.39;ReadPosRankSum=-5.315;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:100,11:111:52:73,0,52 chrXIV 722239 . A T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.420;DP=111;Dels=0.00;FS=9.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.82;MQ0=0;MQRankSum=-1.357;QD=0.20;ReadPosRankSum=5.423;SB=-1.027e+03 GT:AD:DP:GQ:PL 0/1:11,100:111:52:52,0,71 chrXIV 722690 . A G 2832 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5004;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2865,333,0 chrXIV 722746 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.62;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3233,360,0 chrXIV 722822 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.364;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.431;QD=22.74;ReadPosRankSum=1.702;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2694,315,0 chrXIV 722930 . G A 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DP=118;Dels=0.00;FS=3.123;HaplotypeScore=7.5727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.044;QD=20.42;ReadPosRankSum=1.703;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2443,264,0 chrXIV 723140 . G C 1879 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.24;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1912,225,0 chrXIV 723349 . T A 1570 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.79;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1603,177,0 chrXIV 723395 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.21;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1687,189,0 chrXIV 723407 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.50;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1919,213,0 chrXIV 723495 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.37;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2191,243,0 chrXIV 723580 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.7100;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.38;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3363,369,0 chrXIV 723593 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.71;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3268,357,0 chrXIV 723962 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3948;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.30;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3005,351,0 chrXIV 724045 . T C 2859 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.5998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2892,330,0 chrXIV 724322 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=4.298;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.150;QD=22.04;ReadPosRankSum=1.671;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2523,288,0 chrXIV 724364 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.192;QD=22.55;ReadPosRankSum=1.673;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2671,309,0 chrXIV 724425 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.909;QD=22.49;ReadPosRankSum=1.675;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2777,318,0 chrXIV 724595 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.29;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2502,273,0 chrXIV 724650 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.72;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2333,267,0 chrXIV 724673 . A T 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.697;QD=19.03;ReadPosRankSum=2.368;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2336,258,0 chrXIV 724686 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.44;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2135,243,0 chrXIV 724796 . A G 2531 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.45;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2564,297,0 chrXIV 724838 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.22;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2344,267,0 chrXIV 724980 . G T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.62;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3401,375,0 chrXIV 725005 . C A 2878 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.4764;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.59;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2911,324,0 chrXIV 725093 . C G 2324 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.75;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2357,264,0 chrXIV 725113 . T A 1798 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.43;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1831,207,0 chrXIV 725142 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=21.00;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1902,216,0 chrXIV 725147 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.42;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1875,207,0 chrXIV 725230 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.11;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2250,258,0 chrXIV 725251 . A C 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.464;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.827;QD=19.62;ReadPosRankSum=1.670;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2231,258,0 chrXIV 725267 . C A 2194 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=17.84;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2227,258,0 chrXIV 725295 . A T 1875 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.86;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1908,213,0 chrXIV 725367 . A G 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=6.110;HaplotypeScore=4.6362;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.167;QD=17.36;ReadPosRankSum=1.697;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1734,204,0 chrXIV 725512 . T C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=107;Dels=0.00;FS=6.932;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.383;QD=20.99;ReadPosRankSum=2.357;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2279,261,0 chrXIV 725636 . C A 2401 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=14.4421;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.52;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2434,267,0 chrXIV 725820 . T C 2058 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.13;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2091,243,0 chrXIV 725905 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.10;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1862,216,0 chrXIV 725988 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.47;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1934,207,0 chrXIV 726053 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=21.27;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1458,162,0 chrXIV 726058 . A C 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=3.229;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;MQRankSum=-1.278;QD=20.89;ReadPosRankSum=1.675;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1328,153,0 chrXIV 726222 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=20.75;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1361,156,0 chrXIV 726256 . C T 494 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=15.44;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:60:527,60,0 chrXIV 726269 . T A 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=7.33;SB=-2.827e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:128,15,0 chrXIV 726271 . T A 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=8.19;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:131,15,0 chrXIV 726272 . T C 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=7.52;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:123,15,0 chrXIV 726274 . A T 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=8.11;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:130,15,0 chrXIV 726275 . G C 83.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=6.94;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:116,15,0 chrXIV 726277 . T C 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=7.25;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:127,15,0 chrXIV 726281 . A G 273 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=2;QD=9.10;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:1,28:30:36:306,36,0 chrXIV 726427 . C T 224 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=2;QD=11.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:20:30:257,30,0 chrXIV 726682 . G A 124.13 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=3;QD=13.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,8:9:18:157,18,0 chrXIV 726683 . T C 121.13 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=3;QD=13.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,8:9:18:154,18,0 chrXIV 726993 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=15.45;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1053,123,0 chrXIV 727088 . G C 1534 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=0;QD=21.91;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1567,186,0 chrXIV 727111 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=22.31;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1416,156,0 chrXIV 727112 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=22.69;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1417,156,0 chrXIV 727199 . A G 1040 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;MQRankSum=0.535;QD=18.91;ReadPosRankSum=1.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1073,123,0 chrXIV 727222 . C T 794 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=10.18;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:93:827,93,0 chrXIV 727273 . G A 252 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=10.08;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:33:285,33,0 chrXIV 727283 . A G 302 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=11.62;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:39:335,39,0 chrXIV 727407 . G C 1292 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;QD=23.49;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1325,156,0 chrXIV 727466 . G A 793 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=20.33;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:826,93,0 chrXIV 727505 . T C 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=0.790;QD=18.69;ReadPosRankSum=2.369;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1173,138,0 chrXIV 727558 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.03;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2192,249,0 chrXIV 727676 . T C 1498 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.72;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1531,177,0 chrXIV 727684 . T C 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-1.691;QD=18.19;ReadPosRankSum=1.610;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1579,183,0 chrXIV 727708 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=14.67;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1573,177,0 chrXIV 727716 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=14.88;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1581,174,0 chrXIV 727758 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=14.12;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:1854,210,0 chrXIV 727778 . A G 2238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.619;DP=140;Dels=0.00;FS=5.676;HaplotypeScore=5.0103;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.453;QD=15.99;ReadPosRankSum=2.590;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2271,258,0 chrXIV 727862 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.1900;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.17;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2573,297,0 chrXIV 727951 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.61;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2723,300,0 chrXIV 727988 . A T 2825 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.16;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2858,324,0 chrXIV 728021 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.44;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2860,327,0 chrXIV 728207 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2649,297,0 chrXIV 728276 . T A 3128 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.43;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3161,342,0 chrXIV 729083 . T G 3001 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.1070;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.14;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3034,357,0 chrXIV 729315 . G T 2963 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=14.0347;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.32;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2996,333,0 chrXIV 729668 . C T 4921.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.7813;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.55;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4921,540,0 chrXIV 730079 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2619,291,0 chrXIV 730652 . G T 1398 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.51;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1431,159,0 chrXIV 730660 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.19;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1406,159,0 chrXIV 730789 . A G 1030 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.46;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1063,120,0 chrXIV 730973 . A G 1224 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1257,144,0 chrXIV 731058 . A G 1095 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=22.35;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1128,132,0 chrXIV 731064 . A G 1056 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=19.56;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1089,123,0 chrXIV 731080 . T C 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.5318;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=0.483;QD=18.89;ReadPosRankSum=0.653;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1185,135,0 chrXIV 731108 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.99;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1476,165,0 chrXIV 731177 . A T 2543 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2709;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.43;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2576,279,0 chrXIV 731231 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=125;Dels=0.00;FS=4.914;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.034;QD=22.29;ReadPosRankSum=1.648;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2819,321,0 chrXIV 731318 . G A 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.182;DP=127;Dels=0.00;FS=3.150;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-0.330;QD=21.26;ReadPosRankSum=1.017;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2733,293,0 chrXIV 731489 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.69;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2557,285,0 chrXIV 731562 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2946,336,0 chrXIV 732158 . A C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=164;Dels=0.00;FS=3.024;HaplotypeScore=14.7105;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.294;QD=20.91;ReadPosRankSum=2.359;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3429,390,0 chrXIV 732182 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.49;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3084,351,0 chrXIV 732476 . T C 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=136;Dels=0.00;FS=3.522;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.552;QD=19.75;ReadPosRankSum=1.629;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2719,318,0 chrXIV 732533 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.29;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4235,486,0 chrXIV 732854 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3314;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.47;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3155,360,0 chrXIV 732856 . A C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=3.306;HaplotypeScore=3.2880;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.255;QD=18.17;ReadPosRankSum=1.504;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3086,360,0 chrXIV 732888 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=182;Dels=0.00;FS=3.026;HaplotypeScore=14.2392;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.525;QD=18.76;ReadPosRankSum=2.395;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3415,381,0 chrXIV 732983 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.34;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3954,456,0 chrXIV 733142 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2454;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.76;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3756,420,0 chrXIV 733258 . A C 276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=141.5268;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.368;QD=1.71;ReadPosRankSum=1.710;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:39:309,39,0 chrXIV 733303 . T A 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=192;Dels=0.00;FS=3.102;HaplotypeScore=11.9412;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.379;QD=21.83;ReadPosRankSum=1.353;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4192,468,0 chrXIV 733411 . T G 5193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.0068;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.392;QD=22.68;ReadPosRankSum=2.969;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:3,225:229:99:5193,617,0 chrXIV 733695 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.131;DP=178;Dels=0.00;FS=2.885;HaplotypeScore=16.8798;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.840;QD=20.28;ReadPosRankSum=2.269;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3610,403,0 chrXIV 734039 . G T 2948 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.68;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2981,330,0 chrXIV 734116 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.5245;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.96;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2707,306,0 chrXIV 734220 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=121;Dels=0.00;FS=3.643;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.969;QD=19.91;ReadPosRankSum=1.703;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,117:121:99:2442,285,0 chrXIV 734279 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.82;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3525,378,0 chrXIV 734296 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7483;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.94;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3464,378,0 chrXIV 734519 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.62;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3286,360,0 chrXIV 734557 . T C 3919.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.8797;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.19;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3919,441,0 chrXIV 734746 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3274,360,0 chrXIV 734887 . C T 5647.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.77;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5647,621,0 chrXIV 734975 . A G 5599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=244;Dels=0.00;FS=4.212;HaplotypeScore=16.7840;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.909;QD=22.95;ReadPosRankSum=1.703;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,239:244:99:5599,645,0 chrXIV 735047 . T C 6141.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=16.4998;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.25;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:6141,699,0 chrXIV 735112 . A G 5969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.075;DP=293;Dels=0.00;FS=9.084;HaplotypeScore=22.2565;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.001;QD=20.37;ReadPosRankSum=3.402;SB=-3.245e+03 GT:AD:DP:GQ:PL 1/1:4,289:293:99:5969,701,0 chrXIV 735174 . A G 6240.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=22.0951;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.33;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:6240,731,0 chrXIV 735440 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=171;Dels=0.00;FS=5.949;HaplotypeScore=17.0378;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.066;QD=21.08;ReadPosRankSum=2.934;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:3,165:171:99:3604,420,0 chrXIV 735757 . G T 2734 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.23;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2767,297,0 chrXIV 735817 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;DP=121;Dels=0.00;FS=3.032;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=0.071;QD=19.87;ReadPosRankSum=0.620;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2437,268,0 chrXIV 735834 . A T 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=3.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-0.265;QD=19.92;ReadPosRankSum=1.701;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2244,249,0 chrXIV 735856 . G A 2455 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=20.46;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2488,282,0 chrXIV 735889 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=17.97;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2064,231,0 chrXIV 735893 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=16.18;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1845,213,0 chrXIV 736014 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.86;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2015,231,0 chrXIV 736035 . C A 2471 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=21.12;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2504,285,0 chrXIV 736065 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=19.36;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2182,258,0 chrXIV 736111 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=15.0606;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=18.34;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2271,258,0 chrXIV 736153 . A C 1847 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=12.92;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:1880,216,0 chrXIV 736251 . T C 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=117;Dels=0.00;FS=5.278;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;MQRankSum=1.009;QD=15.13;ReadPosRankSum=2.906;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:1803,204,0 chrXIV 736284 . A G 1959 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=14.51;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1992,228,0 chrXIV 736287 . T C 1885 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=14.50;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1918,216,0 chrXIV 736290 . G C 1722 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=13.89;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1755,201,0 chrXIV 736291 . C G 1664 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;QD=13.64;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1697,201,0 chrXIV 736308 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=13.85;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2097,243,0 chrXIV 736327 . T A 2274 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=15.79;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2307,255,0 chrXIV 736429 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=24.47;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3352,372,0 chrXIV 736458 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=19.50;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3016,342,0 chrXIV 736460 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=18.72;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3028,345,0 chrXIV 736619 . C A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.54;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3561,411,0 chrXIV 736660 . G C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.65;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3420,384,0 chrXIV 736686 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.15;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3499,384,0 chrXIV 736739 . A G 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=210;Dels=0.00;FS=2.885;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=1.734;QD=21.81;ReadPosRankSum=2.330;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:2,204:210:99:4580,513,0 chrXIV 736767 . T A 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=208;Dels=0.00;FS=12.065;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=1.015;QD=22.33;ReadPosRankSum=2.889;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4645,510,0 chrXIV 736790 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=193;Dels=0.00;FS=3.590;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.740;QD=20.76;ReadPosRankSum=1.714;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4007,462,0 chrXIV 736802 . A T 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.6282;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.852;QD=20.01;ReadPosRankSum=1.695;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3802,435,0 chrXIV 736859 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=18.55;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2667,306,0 chrXIV 736950 . G C 3201 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.03;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3234,366,0 chrXIV 737061 . A G 3113 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.56;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3146,357,0 chrXIV 737126 . A C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=131;Dels=0.02;FS=3.112;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.738;QD=20.77;ReadPosRankSum=1.705;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2754,324,0 chrXIV 737156 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.83;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2933,324,0 chrXIV 737192 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=140;Dels=0.00;FS=3.577;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.408;QD=21.67;ReadPosRankSum=1.134;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3067,339,0 chrXIV 737420 . A T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.9899;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.44;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3445,384,0 chrXIV 737636 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.00;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3023,345,0 chrXIV 737804 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.22;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2655,300,0 chrXIV 737846 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.31;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2572,294,0 chrXIV 737861 . T C 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=132;Dels=0.00;FS=2.944;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.438;QD=21.25;ReadPosRankSum=2.375;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2838,330,0 chrXIV 737900 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=3.159;HaplotypeScore=7.4890;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.500;QD=21.67;ReadPosRankSum=1.639;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3261,369,0 chrXIV 737930 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.424;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.563;QD=21.31;ReadPosRankSum=1.708;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3080,357,0 chrXIV 738000 . C A 2380 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=7.1144;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.04;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2413,264,0 chrXIV 738020 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=125;Dels=0.00;FS=10.620;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.533;QD=18.96;ReadPosRankSum=2.943;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:3,120:125:99:2403,273,0 chrXIV 738023 . A C 2362 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.45;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2395,279,0 chrXIV 738132 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=3.269;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.102;QD=21.61;ReadPosRankSum=1.646;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2648,303,0 chrXIV 738251 . A T 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=3.027;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.286;QD=23.33;ReadPosRankSum=2.380;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3313,360,0 chrXIV 738340 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=23.02;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2887,318,0 chrXIV 738443 . C T 2560 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=21.51;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2593,297,0 chrXIV 738533 . C T 2110 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=19.54;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2143,249,0 chrXIV 738536 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=19.70;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2141,243,0 chrXIV 738545 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=18.13;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2118,237,0 chrXIV 738554 . T G 1868 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=17.14;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1901,222,0 chrXIV 738591 . A G 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.208;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;MQRankSum=-1.617;QD=13.32;ReadPosRankSum=1.694;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1232,141,0 chrXIV 738603 . T C 1130 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=13.78;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1163,129,0 chrXIV 738607 . A C 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=3.048;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;MQRankSum=0.989;QD=14.01;ReadPosRankSum=2.389;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1168,129,0 chrXIV 738645 . C G 1216 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=17.88;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1249,144,0 chrXIV 738646 . G C 1146 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=16.85;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1179,144,0 chrXIV 738651 . C A 1163 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;QD=15.93;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1196,138,0 chrXIV 738674 . T A 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.654;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;MQRankSum=-1.495;QD=19.18;ReadPosRankSum=1.685;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1433,159,0 chrXIV 738697 . C A 1149 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=16.65;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1182,135,0 chrXIV 738707 . C A 1319 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=17.13;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1352,153,0 chrXIV 738758 . T A 1986 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=19.66;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2019,225,0 chrXIV 738768 . C A 2039 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=19.61;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2072,231,0 chrXIV 738775 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=19.85;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2157,237,0 chrXIV 738850 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=19.24;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1534,174,0 chrXIV 738859 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=19.68;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1529,171,0 chrXIV 738881 . A T 1424 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=18.26;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1457,162,0 chrXIV 738940 . C A 2345 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=20.57;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2378,273,0 chrXIV 738960 . A G 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.724;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=1.365;QD=21.61;ReadPosRankSum=1.706;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2885,330,0 chrXIV 739015 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=18.03;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2791,315,0 chrXIV 739020 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=17.50;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:2816,315,0 chrXIV 739084 . A G 3037 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=19.85;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3070,363,0 chrXIV 739109 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=20.10;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3168,363,0 chrXIV 739126 . T C 2876 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=18.68;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2909,336,0 chrXIV 739135 . C A 2794 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=18.50;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2827,324,0 chrXIV 739168 . C T 2118 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=16.29;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2151,252,0 chrXIV 739169 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=17.29;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2263,255,0 chrXIV 739640 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.81;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2462,270,0 chrXIV 739668 . A G 2309 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.5534;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.99;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2342,267,0 chrXIV 739738 . G C 4306.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.78;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,184:189:99:4306,486,0 chrXIV 739896 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.42;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3686,402,0 chrXIV 740385 . A T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.5588;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.44;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3656,405,0 chrXIV 740460 . C T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.43;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3600,420,0 chrXIV 740592 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.83;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3583,393,0 chrXIV 740598 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.55;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3391,372,0 chrXIV 741004 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2455,285,0 chrXIV 741378 . G C 4639.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.18;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4639,537,0 chrXIV 741432 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=192;Dels=0.00;FS=10.703;HaplotypeScore=22.1528;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.403;QD=22.62;ReadPosRankSum=2.964;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4343,495,0 chrXIV 741663 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.321;QD=23.14;ReadPosRankSum=1.696;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4490,510,0 chrXIV 741976 . C A 2759 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8931;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.72;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2792,309,0 chrXIV 742112 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.59;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2473,285,0 chrXIV 742176 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=21.39;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2557,288,0 chrXIV 742180 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=21.60;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2431,270,0 chrXIV 742206 . T C 2116 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.75;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2149,246,0 chrXIV 742217 . G T 2069 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.31;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2102,240,0 chrXIV 742451 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.110;QD=22.09;ReadPosRankSum=1.644;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1778,201,0 chrXIV 742485 . T C 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=10.652;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.103;QD=19.67;ReadPosRankSum=2.391;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1685,192,0 chrXIV 742517 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=17.98;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1507,174,0 chrXIV 742540 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.37;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1561,174,0 chrXIV 742676 . T G 2901 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.7149;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.59;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2934,336,0 chrXIV 742733 . C A 2985 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.47;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3018,330,0 chrXIV 742739 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=18.40;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2554,279,0 chrXIV 742767 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=17.82;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2670,294,0 chrXIV 742838 . A T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.25;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3792,432,0 chrXIV 742847 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.72;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3825,438,0 chrXIV 742941 . C T 5418.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.86;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5418,600,0 chrXIV 743034 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.17;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3317,375,0 chrXIV 743053 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.28;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3549,390,0 chrXIV 743089 . G A 4304.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.50;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4304,477,0 chrXIV 743137 . T C 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=189;Dels=0.00;FS=11.270;HaplotypeScore=11.0578;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.136;QD=21.61;ReadPosRankSum=2.385;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4084,477,0 chrXIV 743177 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.5736;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.78;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3282,366,0 chrXIV 743251 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.33;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3434,381,0 chrXIV 743262 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.70;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3332,378,0 chrXIV 743408 . A G 2949 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.51;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2982,342,0 chrXIV 743430 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-1.732;QD=21.02;ReadPosRankSum=1.684;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3060,354,0 chrXIV 743434 . T C 3114 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=21.93;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3147,354,0 chrXIV 743441 . T G 3138 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.20;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3171,363,0 chrXIV 743679 . G C 1161 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=20.37;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1194,138,0 chrXIV 743682 . T C 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=0.064;QD=20.02;ReadPosRankSum=1.604;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1134,135,0 chrXIV 743709 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;QD=22.09;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1314,153,0 chrXIV 743736 . C A 1457 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=21.12;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1490,168,0 chrXIV 743766 . A C 1375 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=21.48;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1408,165,0 chrXIV 743791 . C T 1062 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=19.67;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1095,123,0 chrXIV 743793 . G A 1034 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=20.27;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1067,120,0 chrXIV 743834 . T C 579 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=14.12;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:612,72,0 chrXIV 743855 . C T 479 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=11.97;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:60:512,60,0 chrXIV 743856 . A G 471 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=11.77;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:60:504,60,0 chrXIV 743863 . A G 445 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=11.12;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:57:478,57,0 chrXIV 743877 . A G 550 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=12.50;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:66:583,66,0 chrXIV 743903 . G A 553 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=12.86;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:586,66,0 chrXIV 743905 . C A 552 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=12.84;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:585,66,0 chrXIV 743970 . C A 601 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=14.31;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:634,75,0 chrXIV 744001 . A C 435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=34;Dels=0.00;FS=3.128;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=0;MQRankSum=-2.013;QD=12.79;ReadPosRankSum=2.159;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:60:468,60,0 chrXIV 744023 . C T 274 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=10.15;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:39:307,39,0 chrXIV 744031 . T G 219 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=9.52;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:252,33,0 chrXIV 744101 . G A 203.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;QD=15.62;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:236,27,0 chrXIV 744105 . G A 205.01 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=13.67;SB=-1.499e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:238,27,0 chrXIV 744115 . G A 363 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=21.35;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:45:396,45,0 chrXIV 744147 . A G 779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=3.493;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=0.274;QD=20.50;ReadPosRankSum=1.641;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:96:812,96,0 chrXIV 744183 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=22.25;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1190,135,0 chrXIV 744202 . T A 1341 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=22.35;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1374,153,0 chrXIV 744238 . A G 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=57;Dels=0.00;FS=6.990;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.976;QD=20.96;ReadPosRankSum=1.669;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:1,54:57:99:1228,141,0 chrXIV 744305 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=25.03;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1610,180,0 chrXIV 744341 . A G 1464 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=17.02;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1497,174,0 chrXIV 744345 . T C 1461 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-0.685;QD=16.99;ReadPosRankSum=1.652;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1494,174,0 chrXIV 744347 . T C 1435 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=16.69;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1468,171,0 chrXIV 744471 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.54;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3092,357,0 chrXIV 744598 . T C 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=123;Dels=0.00;FS=8.414;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.510;QD=19.57;ReadPosRankSum=2.410;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2440,288,0 chrXIV 744722 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=6.933;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.396;QD=23.49;ReadPosRankSum=2.382;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3477,393,0 chrXIV 744823 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.82;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2491,276,0 chrXIV 744841 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.48;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1973,222,0 chrXIV 744847 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=16.01;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1730,201,0 chrXIV 744887 . T C 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=133;Dels=0.00;FS=9.234;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.223;QD=15.35;ReadPosRankSum=2.916;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:3,128:133:99:2075,234,0 chrXIV 745002 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.23;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3239,366,0 chrXIV 745134 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.33;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3050,336,0 chrXIV 745170 . A G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.346;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.131;QD=23.56;ReadPosRankSum=1.703;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2907,327,0 chrXIV 745284 . C A 2310 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=19.58;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2343,261,0 chrXIV 745289 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=19.06;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2263,249,0 chrXIV 745316 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=16.91;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1893,213,0 chrXIV 745335 . A G 1532 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=15.02;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1565,180,0 chrXIV 745341 . C T 1418 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=14.77;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1451,162,0 chrXIV 745342 . A G 1408 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=14.22;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1441,168,0 chrXIV 745476 . C G 2000 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.87;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2033,234,0 chrXIV 745494 . A G 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=111;Dels=0.00;FS=2.922;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=0.499;QD=19.22;ReadPosRankSum=2.383;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2166,252,0 chrXIV 745524 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-1.432;QD=19.34;ReadPosRankSum=2.402;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2044,240,0 chrXIV 745525 . A G 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=1.160;QD=20.24;ReadPosRankSum=1.698;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2138,243,0 chrXIV 745595 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.96;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1550,186,0 chrXIV 745867 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2236,249,0 chrXIV 745944 . A C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=105;Dels=0.00;FS=3.680;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.214;QD=22.59;ReadPosRankSum=1.699;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2405,279,0 chrXIV 746230 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=19.47;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1727,204,0 chrXIV 746238 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=19.34;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1696,198,0 chrXIV 746245 . T G 1657 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=19.73;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1690,198,0 chrXIV 746254 . T G 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=6.403;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;MQRankSum=-0.021;QD=17.94;ReadPosRankSum=1.690;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1522,180,0 chrXIV 746277 . G A 1028 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=58.5033;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=14.90;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1061,120,0 chrXIV 746338 . G T 872 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=17.80;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:905,99,0 chrXIV 746361 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=19.34;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1000,114,0 chrXIV 746386 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=19.67;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1154,132,0 chrXIV 746416 . G C 518 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=32.4827;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=0;QD=11.77;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:551,69,0 chrXIV 746422 . A G 568 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=11.59;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:75:601,75,0 chrXIV 746431 . A G 487 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=10.15;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:66:520,66,0 chrXIV 746496 . G T 1936 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=22.25;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1969,222,0 chrXIV 746539 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=21.40;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1809,219,0 chrXIV 746557 . A C 1566 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=20.08;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1599,189,0 chrXIV 746569 . C G 1226 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=18.58;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1259,147,0 chrXIV 746594 . C T 799 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=15.98;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:832,99,0 chrXIV 746613 . C T 1102 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=16.45;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1135,132,0 chrXIV 746653 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=21.80;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1821,204,0 chrXIV 746722 . A G 2106 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=22.17;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2139,249,0 chrXIV 746741 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=21.42;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1982,222,0 chrXIV 746746 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=20.42;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1932,222,0 chrXIV 746866 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=14.7628;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.782;QD=23.85;ReadPosRankSum=2.373;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3158,357,0 chrXIV 746926 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=24.66;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2746,303,0 chrXIV 746951 . A G 2322 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=20.73;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2355,267,0 chrXIV 746952 . T C 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-0.122;QD=20.34;ReadPosRankSum=1.671;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2352,264,0 chrXIV 747081 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.226;QD=20.58;ReadPosRankSum=1.705;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2708,312,0 chrXIV 747212 . T C 2705 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=24.37;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2738,312,0 chrXIV 747242 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.93;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2234,246,0 chrXIV 747434 . A C 3149 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=166;Dels=0.00;FS=4.797;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-1.690;QD=18.97;ReadPosRankSum=1.690;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3182,363,0 chrXIV 747437 . T A 3136 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=19.48;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3169,360,0 chrXIV 747443 . T C 2882 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.36;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2915,339,0 chrXIV 747445 . C T 2971 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=18.69;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3004,339,0 chrXIV 747531 . A G 2303 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.88;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2336,270,0 chrXIV 747684 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=23.04;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4148,456,0 chrXIV 747711 . C A 3172 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.82;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3205,369,0 chrXIV 747725 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.9973;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.01;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2903,324,0 chrXIV 747794 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.4173;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.78;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4146,465,0 chrXIV 747833 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.32;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4268,471,0 chrXIV 747936 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=173;Dels=0.00;FS=2.560;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.494;QD=21.61;ReadPosRankSum=2.832;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3738,435,0 chrXIV 748118 . T C 2309 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.62;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2342,273,0 chrXIV 748253 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.22;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3343,366,0 chrXIV 748598 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.71;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3520,411,0 chrXIV 748640 . A C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.257;QD=24.26;ReadPosRankSum=1.710;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3761,423,0 chrXIV 748773 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=146;Dels=0.00;FS=6.173;HaplotypeScore=11.3580;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.169;QD=22.03;ReadPosRankSum=2.398;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3250,366,0 chrXIV 748858 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.82;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3787,435,0 chrXIV 748885 . T G 3117 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.59;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3150,357,0 chrXIV 748937 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=3.041;HaplotypeScore=12.7774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.173;QD=21.76;ReadPosRankSum=2.377;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2992,342,0 chrXIV 749042 . A G 2684 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.81;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2717,321,0 chrXIV 749048 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=127;Dels=0.00;FS=2.595;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.405;QD=19.94;ReadPosRankSum=2.865;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2566,294,0 chrXIV 749073 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.893;QD=19.68;ReadPosRankSum=-0.650;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2552,297,0 chrXIV 749402 . T C 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=0.122;QD=18.65;ReadPosRankSum=1.708;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2719,306,0 chrXIV 749410 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=18.42;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2722,297,0 chrXIV 749415 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=17.72;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2708,297,0 chrXIV 749467 . G T 2568 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=16.36;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2601,291,0 chrXIV 749472 . T C 2446 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=15.99;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2479,294,0 chrXIV 749513 . C G 2301 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.50;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2334,264,0 chrXIV 749541 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=18.94;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1719,204,0 chrXIV 749652 . G A 4039.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=22.19;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4039,459,0 chrXIV 749727 . A C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.607;DP=100;Dels=0.00;FS=10.867;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.020;QD=20.24;ReadPosRankSum=2.910;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2057,231,0 chrXIV 749744 . A G 2090 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.72;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2123,240,0 chrXIV 750028 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.7561;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.82;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4291,471,0 chrXIV 750232 . T G 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=173;Dels=0.00;FS=7.896;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.370;QD=22.42;ReadPosRankSum=2.421;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3879,444,0 chrXIV 750252 . G T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.0037;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.59;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4104,453,0 chrXIV 750427 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.97;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3586,417,0 chrXIV 750473 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=132;Dels=0.00;FS=3.358;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=0.933;QD=19.70;ReadPosRankSum=1.705;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2634,303,0 chrXIV 750670 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=19.67;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2531,291,0 chrXIV 750684 . T C 1963 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=17.85;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1996,237,0 chrXIV 750686 . G A 1837 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=18.01;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1870,216,0 chrXIV 750691 . T C 1730 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=17.47;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1763,207,0 chrXIV 750702 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=16.92;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1454,171,0 chrXIV 750706 . A T 1431 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.952;QD=17.04;ReadPosRankSum=2.917;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1464,162,0 chrXIV 750714 . C T 1237 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1270,141,0 chrXIV 750716 . T C 1155 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1188,138,0 chrXIV 750721 . T C 1089 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1122,132,0 chrXIV 750732 . A G 1135 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1168,132,0 chrXIV 750743 . C A 1096 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1129,126,0 chrXIV 750744 . C T 1118 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1151,126,0 chrXIV 750761 . C T 962 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=13.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:995,108,0 chrXIV 750775 . A G 963 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=1.598;QD=13.19;ReadPosRankSum=2.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,70:73:99:996,114,0 chrXIV 750776 . T C 970 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=13.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1003,114,0 chrXIV 750779 . T A 987 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=12.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1020,114,0 chrXIV 750800 . T C 829 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=10.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:862,99,0 chrXIV 750821 . T C 912 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=1;QD=12.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:945,111,0 chrXIV 750833 . A G 830 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=1;MQRankSum=-0.866;QD=12.77;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,63:65:99:863,102,0 chrXIV 750840 . G A 809 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=17.853;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=1;MQRankSum=-1.675;QD=13.05;ReadPosRankSum=1.619;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,60:62:99:842,99,0 chrXIV 750848 . G A 742 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.843;DP=58;Dels=0.00;FS=32.030;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.33;MQ0=1;MQRankSum=-0.152;QD=12.79;ReadPosRankSum=2.103;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,55:58:74:775,74,0 chrXIV 750850 . A G 724 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.063;DP=59;Dels=0.00;FS=32.030;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=1;MQRankSum=-0.629;QD=12.27;ReadPosRankSum=1.713;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,55:59:69:757,69,0 chrXIV 750867 . G A 366.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;DP=41;Dels=0.00;FS=83.262;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=1;MQRankSum=-1.217;QD=8.93;ReadPosRankSum=2.150;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:10,30:41:97:396,0,97 chrXIV 750875 . A C 331.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;DP=43;Dels=0.00;FS=97.336;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=2;MQRankSum=-0.708;QD=7.70;ReadPosRankSum=0.985;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:15,25:43:99:361,0,184 chrXIV 750888 . G A 103.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;DP=45;Dels=0.00;FS=111.805;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=2;MQRankSum=-2.179;QD=2.29;ReadPosRankSum=-0.930;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:30,15:45:99:133,0,565 chrXIV 750905 . A G 933 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=1;QD=16.96;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,53:55:99:966,111,0 chrXIV 750917 . G A 1267 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=82;Dels=0.00;FS=15.855;HaplotypeScore=8.1468;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=3;MQRankSum=0.913;QD=15.45;ReadPosRankSum=2.130;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,77:82:99:1300,137,0 chrXIV 751004 . T C 788 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=1;QD=11.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:93:821,93,0 chrXIV 751013 . A G 406 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=1;QD=8.12;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,49:50:51:439,51,0 chrXIV 751019 . A T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.481;QD=0.73;ReadPosRankSum=4.138;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,14:41:60:60,0,255 chrXIV 751040 . G T 85.27 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=7;MQRankSum=0.410;QD=3.05;ReadPosRankSum=1.828;SB=-2.716e-01 GT:AD:DP:GQ:PL 0/1:8,20:28:9:115,0,9 chrXIV 751052 . G A 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.807;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=11;MQRankSum=0.979;QD=1.61;ReadPosRankSum=1.501;SB=2.03 GT:AD:DP:GQ:PL 1/1:7,19:26:9:74,9,0 chrXIV 751152 . G C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.634;DP=206;Dels=0.00;FS=5.846;HaplotypeScore=12.3063;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;MQRankSum=0.937;QD=21.83;ReadPosRankSum=2.585;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4497,456,0 chrXIV 751264 . C T 182.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=29;Dels=0.00;FS=41.524;HaplotypeScore=5.7990;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=3;MQRankSum=3.060;QD=6.28;ReadPosRankSum=-1.312;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:17,12:29:66:212,0,66 chrXIV 751313 . C G 905 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=18;QD=12.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:938,108,0 chrXIV 751373 . G A 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;DP=110;Dels=0.00;FS=64.649;HaplotypeScore=5.5805;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=19;MQRankSum=-1.775;QD=0.77;ReadPosRankSum=-3.070;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:79,30:110:99:115,0,1079 chrXIV 751385 . A C 288.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DP=103;Dels=0.00;FS=68.199;HaplotypeScore=5.4113;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=15;MQRankSum=-1.299;QD=2.80;ReadPosRankSum=-1.763;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:63,39:103:99:318,0,795 chrXIV 751529 . A G 666 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.94;MQ0=39;QD=6.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:20,89:109:84:699,84,0 chrXIV 751540 . C T 537 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.10;MQ0=36;QD=4.79;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:18,93:112:69:570,69,0 chrXIV 751553 . C T 552 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.52;MQ0=34;QD=5.16;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:16,91:107:72:585,72,0 chrXIV 751721 . G A 2814 filter AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=16;QD=18.15;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2847,336,0 chrXIV 751807 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=20.62;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3485,384,0 chrXIV 751913 . T G 2215 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=10;MQRankSum=-1.732;QD=15.38;ReadPosRankSum=1.680;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2248,267,0 chrXIV 751925 . C G 1889 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=9;QD=14.99;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,118:126:99:1922,231,0 chrXIV 752030 . A G 4306.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.7145;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=1;QD=21.75;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4306,501,0 chrXIV 752069 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=193;Dels=0.00;FS=6.562;HaplotypeScore=11.9300;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=1;MQRankSum=-1.228;QD=21.20;ReadPosRankSum=2.424;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4092,474,0 chrXIV 752169 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.95;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2948,321,0 chrXIV 752223 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.95;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3424,372,0 chrXIV 752316 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.53;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2415,267,0 chrXIV 752591 . A G 4639.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=1;QD=23.31;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4639,534,0 chrXIV 752756 . T C 483.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;DP=249;Dels=0.00;FS=249.996;HaplotypeScore=27.2210;MLEAC=1;MLEAF=0.500;MQ=47.35;MQ0=0;MQRankSum=-11.972;QD=1.94;ReadPosRankSum=2.397;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,85:249:99:513,0,3062 chrXIV 752858 . G A 318.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.155;DP=179;Dels=0.00;FS=52.523;HaplotypeScore=9.6671;MLEAC=1;MLEAF=0.500;MQ=49.02;MQ0=0;MQRankSum=-11.119;QD=1.78;ReadPosRankSum=-1.268;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:107,71:179:99:348,0,1828 chrXIV 752864 . A G 130.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.437;DP=174;Dels=0.00;FS=41.521;HaplotypeScore=12.8218;MLEAC=1;MLEAF=0.500;MQ=50.22;MQ0=0;MQRankSum=-10.822;QD=0.75;ReadPosRankSum=0.409;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:110,63:174:99:160,0,2073 chrXIV 752879 . G A 655.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;DP=201;Dels=0.00;FS=28.453;HaplotypeScore=14.1415;MLEAC=1;MLEAF=0.500;MQ=49.44;MQ0=0;MQRankSum=-10.813;QD=3.26;ReadPosRankSum=-2.000;SB=-2.630e+02 GT:AD:DP:GQ:PL 0/1:109,89:201:99:685,0,2001 chrXIV 752936 . A T 6114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=295;Dels=0.00;FS=7.204;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;MQRankSum=0.279;QD=20.73;ReadPosRankSum=2.333;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:2,293:295:99:6114,690,0 chrXIV 752968 . C T 7652.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=18.8031;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=22.24;SB=-4.203e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:7652,873,0 chrXIV 753117 . T C 3088.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.452;DP=298;Dels=0.00;FS=0.894;HaplotypeScore=9.6671;MLEAC=1;MLEAF=0.500;MQ=41.83;MQ0=0;MQRankSum=-7.596;QD=10.36;ReadPosRankSum=1.512;SB=-1.720e+03 GT:AD:DP:GQ:PL 0/1:120,176:298:99:3118,0,1975 chrXIV 753120 . C G 2967.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;DP=285;Dels=0.00;FS=0.922;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=41.59;MQ0=0;MQRankSum=-7.578;QD=10.41;ReadPosRankSum=0.725;SB=-1.599e+03 GT:AD:DP:GQ:PL 0/1:112,173:285:99:2997,0,1898 chrXIV 753121 . C T 2814.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.741;DP=281;Dels=0.00;FS=0.444;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=41.39;MQ0=0;MQRankSum=-7.549;QD=10.01;ReadPosRankSum=0.801;SB=-1.508e+03 GT:AD:DP:GQ:PL 0/1:111,169:281:99:2844,0,1833 chrXIV 753128 . A G 2948.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870;DP=290;Dels=0.00;FS=0.917;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=41.95;MQ0=0;MQRankSum=-7.301;QD=10.17;ReadPosRankSum=0.549;SB=-1.310e+03 GT:AD:DP:GQ:PL 0/1:116,173:290:99:2978,0,1722 chrXIV 753269 . C T 2150.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.536;DP=331;Dels=0.00;FS=74.987;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=47.04;MQ0=0;MQRankSum=3.533;QD=6.50;ReadPosRankSum=-1.733;SB=-1.260e+03 GT:AD:DP:GQ:PL 0/1:178,152:331:99:2180,0,2556 chrXIV 753290 . G A 1734.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DP=292;Dels=0.00;FS=66.395;HaplotypeScore=16.7105;MLEAC=1;MLEAF=0.500;MQ=43.30;MQ0=0;MQRankSum=4.040;QD=5.94;ReadPosRankSum=3.328;SB=-1.091e+03 GT:AD:DP:GQ:PL 0/1:156,136:292:99:1764,0,2053 chrXIV 753318 . T G 1127 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.622;DP=99;Dels=0.00;FS=7.391;HaplotypeScore=14.6220;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;MQRankSum=-0.940;QD=11.38;ReadPosRankSum=2.264;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,91:99:99:1160,114,0 chrXIV 753322 . C T 1105 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;QD=12.28;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1138,135,0 chrXIV 753325 . C T 1059 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=0;MQRankSum=-0.151;QD=11.51;ReadPosRankSum=1.431;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1092,120,0 chrXIV 753336 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=11.47;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1111,123,0 chrXIV 753372 . G C 1196 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=13.44;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1229,144,0 chrXIV 753373 . T A 1273 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.266;DP=112;Dels=0.00;FS=68.504;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=3.097;QD=11.37;ReadPosRankSum=7.368;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:23,89:112:99:1306,144,0 chrXIV 753377 . T G 1215 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.293;DP=112;Dels=0.00;FS=68.504;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=2.802;QD=10.85;ReadPosRankSum=7.368;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:23,89:112:99:1248,144,0 chrXIV 753378 . T C 1226 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-1.732;QD=10.85;ReadPosRankSum=1.694;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,89:113:99:1259,141,0 chrXIV 753380 . A G 1194 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=10.57;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:113:99:1227,141,0 chrXIV 753430 . A G 1927 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.651;HaplotypeScore=2.5894;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;MQRankSum=-0.238;QD=18.89;ReadPosRankSum=1.698;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1960,228,0 chrXIV 753431 . G A 1970 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=2.5894;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=18.94;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2003,225,0 chrXIV 753436 . G C 1848 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.7766;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=17.27;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:1881,222,0 chrXIV 753470 . A T 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=47.546;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=5.105;QD=17.50;ReadPosRankSum=2.309;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:19,103:122:99:2168,135,0 chrXIV 753530 . C A 2158 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=19.80;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2191,246,0 chrXIV 753532 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=19.53;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2220,246,0 chrXIV 753596 . A G 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.621;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=0.085;QD=19.83;ReadPosRankSum=1.704;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2452,282,0 chrXIV 753727 . A C 2640 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.95;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2673,312,0 chrXIV 753867 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.9150;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.67;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2203,243,0 chrXIV 754288 . A G 2495 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.80;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2528,291,0 chrXIV 754294 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=124;Dels=0.00;FS=5.348;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.205;QD=19.87;ReadPosRankSum=2.943;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2497,288,0 chrXIV 754370 . A G 2097 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=15.53;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2130,246,0 chrXIV 754371 . C A 2188 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=16.21;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2221,243,0 chrXIV 754380 . C T 1981 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=14.46;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2014,222,0 chrXIV 754384 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=13.91;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1911,213,0 chrXIV 754394 . A C 1681 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.087;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;MQRankSum=-1.394;QD=13.67;ReadPosRankSum=1.704;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1714,192,0 chrXIV 754397 . A C 1546 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=0;QD=13.93;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1579,177,0 chrXIV 754399 . G C 1507 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;QD=12.99;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1540,180,0 chrXIV 754560 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=23.07;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3830,420,0 chrXIV 754667 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=19.74;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1849,201,0 chrXIV 754668 . A T 1814 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=19.30;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1847,213,0 chrXIV 754687 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.74;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1632,177,0 chrXIV 754702 . C G 1639 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=18.42;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1672,189,0 chrXIV 754761 . A G 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=97;Dels=0.00;FS=2.889;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;MQRankSum=-1.434;QD=16.77;ReadPosRankSum=2.399;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1660,183,0 chrXIV 754776 . T C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=103;Dels=0.00;FS=6.238;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;MQRankSum=2.401;QD=13.97;ReadPosRankSum=2.401;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:1472,174,0 chrXIV 754784 . C G 1438 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;QD=13.31;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1471,168,0 chrXIV 754797 . A G 1174 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=12.49;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1207,141,0 chrXIV 754799 . T A 1124 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.104;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;MQRankSum=-0.921;QD=11.96;ReadPosRankSum=1.622;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1157,132,0 chrXIV 754803 . T C 859 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=11.45;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:892,102,0 chrXIV 754804 . C T 891 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=11.88;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:924,105,0 chrXIV 754807 . G A 990 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=12.07;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1023,114,0 chrXIV 754811 . A G 962 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;QD=11.59;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:995,114,0 chrXIV 754812 . T C 930 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.561;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;MQRankSum=-1.567;QD=11.07;ReadPosRankSum=1.691;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:963,114,0 chrXIV 754815 . C T 1029 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=9.80;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1062,114,0 chrXIV 755218 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=2;QD=18.09;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1082,126,0 chrXIV 755323 . A C 1291 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=20.49;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1324,156,0 chrXIV 755359 . G A 806 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.38;MQ0=1;QD=14.93;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:839,99,0 chrXIV 755392 . T C 532 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=6;QD=8.87;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:69:565,69,0 chrXIV 755402 . T C 747 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=6;MQRankSum=0.133;QD=10.52;ReadPosRankSum=1.626;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:93:780,93,0 chrXIV 755412 . G C 772 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=44.9078;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=6;QD=10.72;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:93:805,93,0 chrXIV 755429 . G T 735 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=6;QD=7.99;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:87:768,87,0 chrXIV 755437 . C T 802 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=6;QD=8.53;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:90:835,90,0 chrXIV 755451 . T C 873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=96;Dels=0.00;FS=8.474;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=3;MQRankSum=-3.077;QD=9.09;ReadPosRankSum=3.361;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:4,92:96:99:906,102,0 chrXIV 755457 . A T 1120 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=1;QD=10.98;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1153,129,0 chrXIV 755545 . T C 1230 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.6912;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;MQRankSum=-1.732;QD=16.18;ReadPosRankSum=1.595;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1263,131,0 chrXIV 755548 . T C 1181 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=16.40;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1214,144,0 chrXIV 755549 . A G 1147 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=70;Dels=0.00;FS=12.722;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;MQRankSum=-1.653;QD=16.39;ReadPosRankSum=2.842;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1180,144,0 chrXIV 755567 . C A 1111 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=15.22;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1144,132,0 chrXIV 755572 . T G 1044 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=13.92;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1077,126,0 chrXIV 755706 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.36;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2403,267,0 chrXIV 755761 . G T 3010 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=24.27;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3043,339,0 chrXIV 755812 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.95;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3108,354,0 chrXIV 755923 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.704;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.505;QD=18.48;ReadPosRankSum=1.704;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2288,258,0 chrXIV 756613 . C G 3373.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8874;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.90;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3373,384,0 chrXIV 756668 . C G 2921 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.48;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2954,342,0 chrXIV 756837 . T C 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=114;Dels=0.00;FS=2.915;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.853;QD=23.32;ReadPosRankSum=2.407;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2692,309,0 chrXIV 756903 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=20.78;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2713,300,0 chrXIV 756910 . G T 2686 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.04;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2719,303,0 chrXIV 756919 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=138;Dels=0.00;FS=5.788;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=0.672;QD=20.07;ReadPosRankSum=2.891;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2802,318,0 chrXIV 757068 . G T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.7868;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.06;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3275,363,0 chrXIV 757123 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.82;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3651,399,0 chrXIV 757207 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0701;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.51;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2530,288,0 chrXIV 757236 . T C 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=3.081;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.090;QD=17.70;ReadPosRankSum=1.704;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2228,255,0 chrXIV 757477 . T A 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.1083;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.049;QD=22.59;ReadPosRankSum=1.613;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3954,435,0 chrXIV 757822 . A G 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.0050;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.331;QD=20.83;ReadPosRankSum=1.700;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4520,531,0 chrXIV 757885 . A T 4861.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.90;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4861,546,0 chrXIV 757912 . T C 4037.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.49;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4037,474,0 chrXIV 757924 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=21.65;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4026,447,0 chrXIV 757948 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.96;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3773,432,0 chrXIV 758102 . A G 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-1.286;QD=20.82;ReadPosRankSum=1.715;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4206,489,0 chrXIV 758123 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.5239;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.18;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4066,453,0 chrXIV 758159 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.8198;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=17.60;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3696,426,0 chrXIV 758169 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=18.73;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:3784,417,0 chrXIV 758192 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.117;QD=19.74;ReadPosRankSum=1.697;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3889,441,0 chrXIV 758263 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=192;Dels=0.00;FS=3.021;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.467;QD=21.63;ReadPosRankSum=2.424;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4153,483,0 chrXIV 758397 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.31;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2910,336,0 chrXIV 758547 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=3.614;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.357;QD=23.48;ReadPosRankSum=1.706;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3109,357,0 chrXIV 758691 . G C 2891 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.90;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2924,333,0 chrXIV 758804 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=166;Dels=0.00;FS=3.037;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.274;QD=22.98;ReadPosRankSum=2.390;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3815,441,0 chrXIV 759005 . G T 2674 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.38;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2707,297,0 chrXIV 759022 . T A 2786 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.64;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2819,318,0 chrXIV 759078 . G T 2578 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.96;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2611,300,0 chrXIV 759107 . G T 2233 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.12;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2266,249,0 chrXIV 759188 . A G 2248 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.42;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2281,264,0 chrXIV 759480 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.39;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2496,276,0 chrXIV 759584 . A T 2883 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=21.20;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2916,330,0 chrXIV 759591 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=20.53;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2681,297,0 chrXIV 759743 . A G 2843 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.54;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2876,324,0 chrXIV 759935 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.82;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2441,270,0 chrXIV 759988 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.84;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1825,210,0 chrXIV 760061 . C A 1147 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.44;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1180,132,0 chrXIV 760229 . C T 687 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.08;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:720,81,0 chrXIV 760237 . G A 854 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.41;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:887,99,0 chrXIV 760307 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.09;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2201,240,0 chrXIV 760406 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.63;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2102,231,0 chrXIV 760949 . C G 1987 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.87;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2020,231,0 chrXIV 761002 . G T 2357 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.24;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2390,273,0 chrXIV 761005 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.22;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2325,264,0 chrXIV 761123 . C G 2736 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.00;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2769,318,0 chrXIV 761147 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.85;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2843,315,0 chrXIV 761193 . A G 3074 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.20;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3107,360,0 chrXIV 761636 . A G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=104;Dels=0.00;FS=2.815;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.326;QD=23.32;ReadPosRankSum=2.377;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,100:104:99:2458,273,0 chrXIV 761851 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9499;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.38;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2316,252,0 chrXIV 761972 . G A 2528 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.07;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2561,291,0 chrXIV 762153 . T A 3181 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.05;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3214,363,0 chrXIV 762280 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.83;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3268,384,0 chrXIV 762368 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.3674;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.053;QD=22.48;ReadPosRankSum=1.685;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3350,378,0 chrXIV 762433 . A C 2170 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=17.36;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2203,258,0 chrXIV 762511 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.00;FS=3.770;HaplotypeScore=6.9622;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.962;QD=21.30;ReadPosRankSum=1.711;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3515,393,0 chrXIV 762591 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.276;QD=22.10;ReadPosRankSum=1.625;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2884,336,0 chrXIV 762827 . G A 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.303;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.684;QD=19.85;ReadPosRankSum=1.078;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2892,333,0 chrXIV 762860 . T G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.708;DP=143;Dels=0.00;FS=3.198;HaplotypeScore=11.2365;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.683;QD=21.29;ReadPosRankSum=-1.147;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3078,351,0 chrXIV 763381 . A C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3090;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-0.441;QD=19.19;ReadPosRankSum=1.653;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2758,297,0 chrXIV 763402 . C G 2619 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=18.57;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2652,297,0 chrXIV 763497 . T A 1999 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=13.98;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2032,225,0 chrXIV 763540 . C G 2385 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=18.21;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2418,282,0 chrXIV 763583 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.72;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3857,420,0 chrXIV 763742 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.86;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3293,366,0 chrXIV 763922 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.59;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1698,192,0 chrXIV 763930 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=16.86;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1567,180,0 chrXIV 763942 . A C 1690 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1793;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.42;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1723,195,0 chrXIV 764011 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.71;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1897,213,0 chrXIV 764090 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.67;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2222,255,0 chrXIV 764314 . G T 1689 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.82;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1722,189,0 chrXIV 764357 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.41;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1445,168,0 chrXIV 764419 . G T 1332 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.97;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1365,153,0 chrXIV 764481 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.77;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1470,159,0 chrXIV 764495 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=23.68;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1525,168,0 chrXIV 764538 . T G 1151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.361;QD=20.55;ReadPosRankSum=-0.433;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1184,138,0 chrXIV 764688 . A G 829 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.74;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:862,96,0 chrXIV 764697 . A T 770 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.25;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:803,93,0 chrXIV 764938 . T C 2052 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.43;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2085,237,0 chrXIV 765005 . A C 2621 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2654,303,0 chrXIV 765169 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.69;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3834,447,0 chrXIV 765330 . T G 3119 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.52;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3152,360,0 chrXIV 765537 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=159;Dels=0.00;FS=5.526;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.790;QD=22.57;ReadPosRankSum=2.956;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3588,408,0 chrXIV 765758 . T A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.10;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4205,465,0 chrXIV 766008 . T G 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=128;Dels=0.00;FS=7.070;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.509;QD=21.12;ReadPosRankSum=2.411;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2737,318,0 chrXIV 766895 . A T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.94;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3739,414,0 chrXIV 767015 . G A 4952.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.0270;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.72;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4952,546,0 chrXIV 767488 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=4.287;HaplotypeScore=9.0747;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.226;QD=21.96;ReadPosRankSum=1.646;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3558,417,0 chrXIV 767534 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=162;Dels=0.00;FS=8.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.131;QD=21.66;ReadPosRankSum=2.388;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3509,411,0 chrXIV 767726 . A C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.73;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3342,384,0 chrXIV 768008 . A C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.075;DP=81;Dels=0.00;FS=2.762;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.857;QD=17.54;ReadPosRankSum=2.294;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:2,77:81:99:1454,171,0 chrXIV 768365 . A T 3200 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3233,351,0 chrXIV 768575 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4272;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.82;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4120,468,0 chrXIV 768661 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7540;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.61;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3086,342,0 chrXIV 768845 . A C 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=120;Dels=0.00;FS=3.310;HaplotypeScore=7.9684;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.126;QD=20.01;ReadPosRankSum=0.693;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2434,285,0 chrXIV 768862 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.60;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2690,306,0 chrXIV 768903 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=155;Dels=0.00;FS=3.813;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.225;QD=20.01;ReadPosRankSum=1.687;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3134,357,0 chrXIV 769025 . G C 2303 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.38;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2336,270,0 chrXIV 769242 . T A 3036 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.53;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3069,333,0 chrXIV 769375 . A G 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.000;QD=21.88;ReadPosRankSum=1.699;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2309,267,0 chrXIV 769401 . G T 2566 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.75;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2599,291,0 chrXIV 769532 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.06;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2316,255,0 chrXIV 769599 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=7.034;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.399;QD=20.58;ReadPosRankSum=2.407;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2379,276,0 chrXIV 769652 . T C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=124;Dels=0.00;FS=2.826;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.089;QD=20.26;ReadPosRankSum=2.251;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2545,300,0 chrXIV 769715 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2883,333,0 chrXIV 770068 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.87;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1513,168,0 chrXIV 770095 . C A 1299 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=22.79;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1332,147,0 chrXIV 770112 . T A 1409 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.13;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1442,165,0 chrXIV 770149 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.36;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1443,165,0 chrXIV 770174 . A G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.365;QD=21.53;ReadPosRankSum=1.680;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1454,168,0 chrXIV 770313 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.49;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1855,210,0 chrXIV 770350 . T C 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.1389;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.577;QD=22.54;ReadPosRankSum=1.694;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2062,231,0 chrXIV 770427 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.78;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3519,384,0 chrXIV 770491 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3363,381,0 chrXIV 770542 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3855,444,0 chrXIV 770599 . G A 4899.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.3657;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.89;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4899,540,0 chrXIV 770786 . T A 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.3159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.030;QD=22.89;ReadPosRankSum=1.687;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5311,594,0 chrXIV 770920 . T C 4790.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4790,546,0 chrXIV 771471 . C T 3773.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.28;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3773,420,0 chrXIV 771541 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.175;QD=20.53;ReadPosRankSum=1.713;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3654,414,0 chrXIV 771550 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=3.444;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.455;QD=19.54;ReadPosRankSum=1.693;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3497,402,0 chrXIV 771701 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.36;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2828,318,0 chrXIV 771733 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.29;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2567,285,0 chrXIV 772118 . T G 2024 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.76;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2057,243,0 chrXIV 772160 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.09;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1462,165,0 chrXIV 772236 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=17.51;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1451,162,0 chrXIV 772254 . G C 1726 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.18;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1759,198,0 chrXIV 772272 . A G 1769 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.23;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1802,204,0 chrXIV 772448 . G C 1428 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=21.64;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1461,165,0 chrXIV 772480 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.62;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:899,99,0 chrXIV 772541 . C A 834 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=18.53;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:867,96,0 chrXIV 772570 . C G 893 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=55.8488;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=13.95;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:926,108,0 chrXIV 772594 . C A 594 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=9.00;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:72:627,72,0 chrXIV 772697 . G C 1383 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.12;MQ0=0;QD=15.37;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1416,162,0 chrXIV 772716 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=1;QD=16.20;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1507,171,0 chrXIV 772728 . C T 1469 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=7;QD=16.14;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1502,168,0 chrXIV 772737 . A G 1344 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.60;MQ0=11;QD=15.10;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1377,156,0 chrXIV 772770 . C T 575 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.922;DP=82;Dels=0.00;FS=22.543;HaplotypeScore=11.5461;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=22;MQRankSum=2.309;QD=7.01;ReadPosRankSum=2.836;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:21,61:82:47:608,47,0 chrXIV 772806 . G A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;DP=99;Dels=0.00;FS=57.881;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=19.70;MQ0=25;MQRankSum=-0.114;QD=0.11;ReadPosRankSum=2.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,36:99:41:41,0,428 chrXIV 772810 . A C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.152;DP=99;Dels=0.00;FS=65.682;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=19.55;MQ0=24;MQRankSum=0.451;QD=0.13;ReadPosRankSum=3.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,36:99:43:43,0,426 chrXIV 772822 . G A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;DP=95;Dels=0.00;FS=95.189;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=18.04;MQ0=20;MQRankSum=2.299;QD=0.18;ReadPosRankSum=4.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,35:95:47:47,0,334 chrXIV 772827 . T A 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.211;DP=97;Dels=0.00;FS=117.071;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=17.56;MQ0=16;MQRankSum=3.469;QD=0.20;ReadPosRankSum=4.034;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,34:97:49:49,0,323 chrXIV 772834 . T C 359 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.7363;MLEAC=2;MLEAF=1.00;MQ=17.40;MQ0=12;MQRankSum=-1.732;QD=3.86;ReadPosRankSum=1.689;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,92:93:45:392,45,0 chrXIV 772836 . G C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;DP=101;Dels=0.00;FS=151.444;HaplotypeScore=6.7363;MLEAC=1;MLEAF=0.500;MQ=17.58;MQ0=12;MQRankSum=4.243;QD=0.17;ReadPosRankSum=2.332;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,33:101:47:47,0,312 chrXIV 772839 . T C 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.072;DP=103;Dels=0.00;FS=231.678;HaplotypeScore=9.8871;MLEAC=1;MLEAF=0.500;MQ=17.76;MQ0=12;MQRankSum=-5.994;QD=1.65;ReadPosRankSum=0.530;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:46,57:103:99:200,0,212 chrXIV 772854 . C T 884 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=16.4259;MLEAC=2;MLEAF=1.00;MQ=21.01;MQ0=5;QD=8.34;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:917,102,0 chrXIV 772860 . T G 427.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786;DP=116;Dels=0.00;FS=218.589;HaplotypeScore=33.1512;MLEAC=1;MLEAF=0.500;MQ=22.38;MQ0=4;MQRankSum=-4.418;QD=3.68;ReadPosRankSum=5.128;SB=-5.002e+01 GT:AD:DP:GQ:PL 0/1:42,74:116:99:457,0,365 chrXIV 773034 . T C 4651.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.111;DP=342;Dels=0.00;FS=2.257;HaplotypeScore=18.4458;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=50;MQRankSum=1.061;QD=13.60;ReadPosRankSum=4.174;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:7,334:342:99:4651,534,0 chrXIV 773076 . A G 4436.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=295;Dels=0.00;FS=5.019;HaplotypeScore=5.0726;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=74;MQRankSum=0.337;QD=15.04;ReadPosRankSum=1.716;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,288:295:99:4436,519,0 chrXIV 773217 . A G 3146 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=322;Dels=0.00;FS=6.404;HaplotypeScore=16.0932;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=54;MQRankSum=2.488;QD=9.77;ReadPosRankSum=-3.165;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:22,300:322:99:3179,326,0 chrXIV 773226 . T C 3039 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=301;Dels=0.00;FS=16.766;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=48;MQRankSum=-1.028;QD=10.10;ReadPosRankSum=2.401;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:2,298:301:99:3072,360,0 chrXIV 773244 . A T 4153.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.426;DP=291;Dels=0.00;FS=10.769;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=36;MQRankSum=2.336;QD=14.27;ReadPosRankSum=0.814;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:25,265:291:99:4153,417,0 chrXIV 773265 . T G 3879.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=263;Dels=0.00;FS=8.432;HaplotypeScore=7.5865;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=36;MQRankSum=0.583;QD=14.75;ReadPosRankSum=1.717;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,259:263:99:3879,441,0 chrXIV 773346 . C G 171.03 filter AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=12.66;MQ0=46;QD=0.92;SB=-1.509e+02 GT:AD:DP:GQ:PL 1/1:0,183:185:24:204,24,0 chrXIV 773349 . A C 178.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.08;MQ0=47;MQRankSum=-1.475;QD=0.98;ReadPosRankSum=1.706;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,181:182:24:211,24,0 chrXIV 773424 . T G 859 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=94;Dels=0.00;FS=10.028;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=20.14;MQ0=38;MQRankSum=-0.596;QD=9.14;ReadPosRankSum=2.362;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:892,102,0 chrXIV 773456 . C T 644.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.965;DP=94;Dels=0.00;FS=165.355;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.01;MQ0=32;MQRankSum=1.258;QD=6.85;ReadPosRankSum=-0.154;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:32,62:94:99:674,0,368 chrXIV 773547 . A G 378.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;DP=74;Dels=0.00;FS=6.385;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=21.78;MQ0=16;MQRankSum=0.591;QD=5.11;ReadPosRankSum=1.026;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:35,39:74:99:408,0,429 chrXIV 773556 . A G 291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DP=75;Dels=0.00;FS=27.161;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=20.76;MQ0=20;MQRankSum=-1.898;QD=3.88;ReadPosRankSum=-0.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,26:75:99:321,0,485 chrXIV 773664 . T C 749 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.563;DP=107;Dels=0.00;FS=11.949;HaplotypeScore=9.3488;MLEAC=2;MLEAF=1.00;MQ=19.00;MQ0=50;MQRankSum=-1.034;QD=7.00;ReadPosRankSum=3.505;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:7,99:107:90:782,90,0 chrXIV 773667 . C T 480.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DP=104;Dels=0.02;FS=63.290;HaplotypeScore=8.5601;MLEAC=1;MLEAF=0.500;MQ=19.92;MQ0=45;MQRankSum=1.504;QD=4.62;ReadPosRankSum=-0.412;SB=-2.502e+01 GT:AD:DP:GQ:PL 0/1:33,69:102:99:510,0,106 chrXIV 773745 . C T 719 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=26;QD=8.26;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:87:752,87,0 chrXIV 773751 . T C 629 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=27;QD=7.40;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:78:662,78,0 chrXIV 773805 . T G 443 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DP=65;Dels=0.00;FS=8.451;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=18.68;MQ0=29;MQRankSum=-1.634;QD=6.82;ReadPosRankSum=1.634;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:3,61:65:57:476,57,0 chrXIV 773898 . C T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;DP=146;Dels=0.00;FS=129.701;HaplotypeScore=10.5958;MLEAC=1;MLEAF=0.500;MQ=20.81;MQ0=49;MQRankSum=-0.602;QD=0.14;ReadPosRankSum=1.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,36:146:50:50,0,838 chrXIV 773901 . A G 1045 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5958;MLEAC=2;MLEAF=1.00;MQ=19.77;MQ0=47;QD=7.52;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1078,132,0 chrXIV 773937 . C T 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;DP=85;Dels=0.00;FS=143.960;HaplotypeScore=3.2819;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=20;MQRankSum=-0.134;QD=4.19;ReadPosRankSum=-0.900;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:33,51:85:99:386,0,110 chrXIV 773940 . C T 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.404;DP=84;Dels=0.00;FS=131.919;HaplotypeScore=4.0706;MLEAC=1;MLEAF=0.500;MQ=19.55;MQ0=20;MQRankSum=0.087;QD=1.05;ReadPosRankSum=0.759;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:50,34:84:99:118,0,359 chrXIV 773949 . T C 252 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.67;MQ0=17;QD=4.06;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:33:285,33,0 chrXIV 773958 . A G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.148;DP=47;Dels=0.00;FS=46.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.90;MQ0=17;MQRankSum=0.830;QD=0.45;ReadPosRankSum=2.655;SB=-6.042e+00 GT:AD:DP:GQ:PL 0/1:32,15:47:51:51,0,114 chrXIV 773970 . T C 13.28 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=28;Dels=0.00;FS=7.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.92;MQ0=15;MQRankSum=0.099;QD=0.47;ReadPosRankSum=1.480;SB=-2.211e+01 GT:AD:DP:GQ:PL 0/1:17,11:28:15:43,0,15 chrXIV 774000 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=5;QD=1.98;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:5,6:11:6:53,6,0 chrXIV 774057 . G A 313 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=16.26;MQ0=26;QD=4.89;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:39:346,39,0 chrXIV 774075 . G T 687 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=21.12;MQ0=33;QD=7.01;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:78:720,78,0 chrXIV 774126 . G T 1886 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=177;Dels=0.00;FS=3.458;HaplotypeScore=16.5033;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=43;MQRankSum=4.017;QD=10.66;ReadPosRankSum=1.300;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:10,167:177:99:1919,197,0 chrXIV 774154 . C T 1537 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=9.8738;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=31;QD=11.91;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,124:128:99:1570,177,0 chrXIV 774280 . C T 1126 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=6;QD=15.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1159,123,0 chrXIV 774368 . C T 1716 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=24;QD=14.18;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1749,192,0 chrXIV 774399 . T G 307 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=18;QD=8.30;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,33:37:39:340,39,0 chrXIV 774421 . C T 65.51 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=4;QD=8.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:12:98,12,0 chrXIV 774476 . G C 120.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.49;MQ0=0;QD=7.51;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:153,18,0 chrXIV 774484 . T C 121.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=0;QD=6.06;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:154,18,0 chrXIV 774495 . G A 126.13 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=0;QD=5.05;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:159,18,0 chrXIV 774504 . T C 118.13 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=19.75;MQ0=1;QD=3.69;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:18:151,18,0 chrXIV 774507 . T C 123.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=34;Dels=0.00;FS=5.051;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=19.51;MQ0=1;MQRankSum=0.433;QD=3.62;ReadPosRankSum=1.625;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:2,31:33:18:156,18,0 chrXIV 774533 . C A 149.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.223;DP=69;Dels=0.00;FS=2.820;HaplotypeScore=2.6624;MLEAC=2;MLEAF=1.00;MQ=18.27;MQ0=3;MQRankSum=-0.992;QD=2.16;ReadPosRankSum=0.830;SB=-1.021e+02 GT:AD:DP:GQ:PL 1/1:4,63:69:21:182,21,0 chrXIV 774594 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DP=40;Dels=0.00;FS=23.127;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=6;MQRankSum=2.374;QD=0.50;ReadPosRankSum=-0.213;SB=-5.277e+01 GT:AD:DP:GQ:PL 1/1:19,21:40:6:51,6,0 chrXIV 774599 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.5736;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=5;QD=0.66;SB=-8.574e+01 GT:AD:DP:GQ:PL 1/1:0,18:33:6:53,6,0 chrXIV 774636 . T G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.56;MQ0=6;QD=1.32;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:51,6,0 chrXIV 774644 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.82;MQ0=8;QD=1.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:6:49,6,0 chrXIV 774647 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=7;QD=1.68;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,12:13:6:53,6,0 chrXIV 774663 . C A 160.06 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=13;QD=5.34;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,28:30:21:193,21,0 chrXIV 774736 . A G 347.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DP=247;Dels=0.00;FS=43.250;HaplotypeScore=71.2883;MLEAC=1;MLEAF=0.500;MQ=39.76;MQ0=19;MQRankSum=-6.827;QD=1.40;ReadPosRankSum=-0.043;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,74:247:99:377,0,2826 chrXIV 774737 . C T 754.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DP=256;Dels=0.00;FS=39.401;HaplotypeScore=75.2317;MLEAC=1;MLEAF=0.500;MQ=39.46;MQ0=19;MQRankSum=5.181;QD=2.95;ReadPosRankSum=0.273;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:195,61:256:99:784,0,2674 chrXIV 774840 . A G 2370 filter AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=18.0323;MLEAC=2;MLEAF=1.00;MQ=19.80;MQ0=70;QD=9.56;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,243:248:99:2403,285,0 chrXIV 775031 . G A 7139.01 filter AC=2;AF=1.00;AN=2;DP=491;Dels=0.00;FS=0.000;HaplotypeScore=15.7502;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=125;QD=14.54;SB=-4.266e+03 GT:AD:DP:GQ:PL 1/1:0,490:491:99:7139,801,0 chrXIV 775095 . T C 3838.01 filter AC=2;AF=1.00;AN=2;DP=444;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=20.96;MQ0=219;QD=8.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,441:444:99:3838,432,0 chrXIV 775104 . A G 1485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;DP=441;Dels=0.00;FS=0.000;HaplotypeScore=8.1412;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=193;MQRankSum=-0.369;QD=3.37;ReadPosRankSum=1.701;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,245:441:99:1515,0,1885 chrXIV 775176 . A T 1823 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.079;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.3620;MLEAC=2;MLEAF=1.00;MQ=18.88;MQ0=128;MQRankSum=-0.552;QD=8.14;ReadPosRankSum=4.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,217:224:99:1856,210,0 chrXIV 775517 . G C 4541.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DP=908;Dels=0.00;FS=2.444;HaplotypeScore=74.7083;MLEAC=1;MLEAF=0.500;MQ=34.12;MQ0=25;MQRankSum=2.463;QD=5.00;ReadPosRankSum=1.463;SB=-2.581e+03 GT:AD:DP:GQ:PL 0/1:576,317:908:99:4541,0,9959 chrXIV 775917 . G T 748.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.634;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=22.88;MQ0=88;MQRankSum=2.031;QD=3.31;ReadPosRankSum=1.121;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,88:226:99:778,0,1330 chrXIV 775974 . A G 3411.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.497;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=17;MQRankSum=-2.290;QD=17.06;ReadPosRankSum=3.719;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:5,195:200:99:3411,393,0 chrXIV 776103 . A G 178.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=8;QD=8.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,19:21:24:211,24,0 chrXIV 776172 . G A 682 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=12;QD=15.50;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:715,78,0 chrXIV 776214 . A G 512 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=32;Dels=0.00;FS=40.399;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=6;MQRankSum=3.383;QD=16.00;ReadPosRankSum=3.383;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:5,27:32:60:545,60,0 chrXIV 776259 . G A 431 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=5;QD=16.58;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:464,54,0 chrXIV 776271 . G A 452 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=6;QD=15.59;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:57:485,57,0 chrXIV 776430 . C G 2148 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.7045;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.61;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2181,255,0 chrXIV 776471 . G A 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;DP=108;Dels=0.00;FS=6.636;HaplotypeScore=11.0098;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.536;QD=23.28;ReadPosRankSum=0.065;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2547,261,0 chrXIV 776784 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3069,333,0 chrXIV 776872 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.47;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2357,261,0 chrXIV 776904 . T G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=109;Dels=0.00;FS=8.756;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.474;QD=21.50;ReadPosRankSum=2.357;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,104:109:99:2376,276,0 chrXIV 777079 . T C 2058 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.00;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2091,237,0 chrXIV 777128 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.70;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2485,273,0 chrXIV 777188 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.802;HaplotypeScore=6.6723;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.525;QD=22.27;ReadPosRankSum=1.680;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2995,342,0 chrXIV 777259 . T C 2272 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2305,270,0 chrXIV 777337 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1025;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.48;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1774,204,0 chrXIV 777389 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4090;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.15;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1746,198,0 chrXIV 777435 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.17;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1241,138,0 chrXIV 777773 . A G 1982 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=24.17;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2015,228,0 chrXIV 777816 . C G 1884 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.83;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1917,213,0 chrXIV 777818 . T C 1760 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.92;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1793,207,0 chrXIV 777944 . T C 2875 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.68;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2908,327,0 chrXIV 777993 . A G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.732;QD=22.77;ReadPosRankSum=1.677;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2947,327,0 chrXIV 778007 . A G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.982;QD=20.83;ReadPosRankSum=1.674;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2553,291,0 chrXIV 778196 . C A 2452 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4318;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=24.28;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2485,273,0 chrXIV 778223 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.20;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2469,282,0 chrXIV 778256 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.15;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2381,273,0 chrXIV 778411 . C A 2306 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.83;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2339,255,0 chrXIV 778454 . G A 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.344;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.718;QD=16.56;ReadPosRankSum=0.915;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2119,214,0 chrXIV 778455 . G A 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.308;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.561;QD=17.52;ReadPosRankSum=0.994;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2240,214,0 chrXIV 778589 . G C 2163 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.1369;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=19.49;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2196,261,0 chrXIV 778682 . A T 2936 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.43;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2969,327,0 chrXIV 778731 . A G 2423 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.5026;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=19.23;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2456,279,0 chrXIV 778746 . G C 2326 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=18.91;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2359,261,0 chrXIV 778777 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=20.74;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2356,258,0 chrXIV 778804 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=17.73;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1788,198,0 chrXIV 778831 . A G 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-1.261;QD=19.11;ReadPosRankSum=1.698;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2001,231,0 chrXIV 778885 . T C 1944 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.25;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1977,222,0 chrXIV 779009 . T A 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=0.665;QD=23.06;ReadPosRankSum=1.692;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3989,441,0 chrXIV 779010 . A C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=176;Dels=0.00;FS=17.764;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;MQRankSum=-0.645;QD=21.45;ReadPosRankSum=2.901;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:3,170:176:99:3775,438,0 chrXIV 779046 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=20.99;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3379,384,0 chrXIV 779067 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=20.18;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2677,309,0 chrXIV 779096 . C A 2923 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=21.34;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2956,336,0 chrXIV 779134 . G A 2548 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.07;MQ0=0;QD=21.78;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2581,282,0 chrXIV 779143 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=5.119;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;MQRankSum=-1.199;QD=20.95;ReadPosRankSum=1.705;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2756,312,0 chrXIV 779157 . A C 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.399;DP=147;Dels=0.00;FS=2.413;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;MQRankSum=-2.613;QD=20.10;ReadPosRankSum=3.399;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:4,143:147:99:2988,351,0 chrXIV 779192 . T G 2933 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=20.80;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2966,339,0 chrXIV 779202 . T A 2640 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;QD=20.00;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2673,300,0 chrXIV 779203 . G A 2617 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;QD=19.83;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2650,297,0 chrXIV 779204 . T C 2611 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;MQRankSum=-1.604;QD=19.34;ReadPosRankSum=-0.038;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2644,312,0 chrXIV 779247 . A G 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.124;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;MQRankSum=-1.311;QD=17.39;ReadPosRankSum=2.409;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2137,243,0 chrXIV 779265 . T C 1296 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2860;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=13.94;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1329,153,0 chrXIV 779288 . T A 1334 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=15.33;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1367,153,0 chrXIV 779363 . T C 799 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9385;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=13.32;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:96:832,96,0 chrXIV 779510 . A G 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.256;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.083;QD=20.74;ReadPosRankSum=-1.342;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1713,183,0 chrXIV 779605 . A G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=4.187;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.607;QD=22.18;ReadPosRankSum=1.707;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3116,351,0 chrXIV 779825 . G T 2988 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.34;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3021,330,0 chrXIV 779864 . G C 2465 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.25;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2498,288,0 chrXIV 779914 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3404,390,0 chrXIV 780633 . A C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=149;Dels=0.00;FS=3.030;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.685;QD=22.21;ReadPosRankSum=2.417;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3310,372,0 chrXIV 780720 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.66;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3285,375,0 chrXIV 781018 . G C 2644 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.2197;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.48;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2677,303,0 chrXIV 781201 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=23.53;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2809,315,0 chrXIV 781274 . T A 2231 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.441;DP=132;Dels=0.00;FS=45.848;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=4;MQRankSum=3.548;QD=16.90;ReadPosRankSum=1.945;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:32,100:132:99:2264,264,0 chrXIV 781298 . A T 1840 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=4;QD=17.86;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:4,99:103:99:1873,213,0 chrXIV 781360 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=2;QD=16.04;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1396,159,0 chrXIV 781372 . G C 1698 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=2;QD=16.65;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1731,198,0 chrXIV 781374 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=2;QD=16.11;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1741,207,0 chrXIV 781400 . T C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=140;Dels=0.00;FS=15.472;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;MQRankSum=0.061;QD=18.35;ReadPosRankSum=2.327;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2602,294,0 chrXIV 781404 . A C 2590 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=17.50;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2623,303,0 chrXIV 781487 . A G 852.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;DP=90;Dels=0.00;FS=13.412;HaplotypeScore=12.8733;MLEAC=1;MLEAF=0.500;MQ=31.83;MQ0=0;MQRankSum=0.051;QD=9.47;ReadPosRankSum=4.263;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:31,59:90:99:882,0,377 chrXIV 781495 . A T 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;DP=71;Dels=0.00;FS=2.950;HaplotypeScore=40.8160;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=-0.052;QD=18.39;ReadPosRankSum=2.207;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1339,156,0 chrXIV 781523 . T A 600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=41;Dels=0.00;FS=4.037;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=3;MQRankSum=0.547;QD=14.63;ReadPosRankSum=1.641;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:75:633,75,0 chrXIV 781568 . G T 952 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=3;QD=16.14;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:985,120,0 chrXIV 781582 . T C 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.429;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=3;MQRankSum=1.143;QD=17.48;ReadPosRankSum=2.890;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1204,144,0 chrXIV 781624 . A G 314.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.063;DP=74;Dels=0.00;FS=17.882;HaplotypeScore=51.9154;MLEAC=1;MLEAF=0.500;MQ=25.69;MQ0=0;MQRankSum=1.127;QD=4.24;ReadPosRankSum=-0.481;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:48,26:74:99:344,0,697 chrXIV 781628 . C G 688.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DP=65;Dels=0.00;FS=69.814;HaplotypeScore=84.7523;MLEAC=1;MLEAF=0.500;MQ=25.88;MQ0=0;MQRankSum=2.127;QD=10.58;ReadPosRankSum=-0.629;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:22,42:65:86:718,0,86 chrXIV 781632 . T A 437.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.709;DP=49;Dels=0.00;FS=109.218;HaplotypeScore=12.6499;MLEAC=1;MLEAF=0.500;MQ=25.94;MQ0=0;MQRankSum=2.422;QD=8.92;ReadPosRankSum=1.900;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,27:49:99:467,0,209 chrXIV 781633 . G A 802 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=12.6499;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;QD=16.71;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:835,102,0 chrXIV 781634 . A G 388.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.225;DP=48;Dels=0.00;FS=120.062;HaplotypeScore=12.6499;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=0;MQRankSum=2.473;QD=8.08;ReadPosRankSum=1.873;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,26:48:99:418,0,226 chrXIV 781636 . T C 864 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=51;Dels=0.00;FS=10.124;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=0;MQRankSum=-2.302;QD=16.94;ReadPosRankSum=2.862;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:3,48:51:99:897,105,0 chrXIV 781637 . G C 437.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.285;DP=51;Dels=0.00;FS=118.169;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.86;MQ0=0;MQRankSum=1.630;QD=8.57;ReadPosRankSum=2.534;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,25:51:99:467,0,207 chrXIV 781641 . T G 445.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.629;DP=61;Dels=0.00;FS=146.557;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=4;MQRankSum=0.839;QD=7.30;ReadPosRankSum=0.999;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:28,33:61:99:475,0,277 chrXIV 781648 . G A 416.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;DP=68;Dels=0.00;FS=146.557;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=11;MQRankSum=0.839;QD=6.12;ReadPosRankSum=0.104;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:38,30:68:99:446,0,336 chrXIV 781670 . C G 326.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.186;DP=79;Dels=0.00;FS=138.112;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=25;MQRankSum=1.249;QD=4.13;ReadPosRankSum=-2.342;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:33,46:79:99:356,0,341 chrXIV 781691 . A G 517 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=25;QD=7.95;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:63:550,63,0 chrXIV 781699 . A G 298 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.70;MQ0=26;QD=5.42;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:21,34:55:36:331,36,0 chrXIV 781725 . G C 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;DP=60;Dels=0.00;FS=37.874;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.54;MQ0=29;MQRankSum=1.061;QD=0.48;ReadPosRankSum=-1.377;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:48,12:60:59:59,0,249 chrXIV 781759 . G A 653 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=48;Dels=0.00;FS=58.747;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=7;MQRankSum=3.566;QD=13.60;ReadPosRankSum=-1.255;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,40:48:78:686,78,0 chrXIV 781799 . A G 566 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=4;MQRankSum=-1.733;QD=14.15;ReadPosRankSum=1.636;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:69:599,69,0 chrXIV 781809 . G A 431 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=17;MQRankSum=4.212;QD=7.98;ReadPosRankSum=3.742;SB=3.07 GT:AD:DP:GQ:PL 1/1:25,26:54:54:464,54,0 chrXIV 781833 . T C 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.755;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.71;MQ0=69;MQRankSum=2.558;QD=1.10;ReadPosRankSum=-2.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,9:97:96:137,0,96 chrXIV 781858 . G A 203.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.48;MQ0=113;MQRankSum=1.375;QD=1.43;ReadPosRankSum=1.016;SB=-2.375e-02 GT:AD:DP:GQ:PL 1/1:100,41:142:27:236,27,0 chrXIV 782424 . G A 16.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=13;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.25;MQ0=5;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.922;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,5:13:20:46,0,20 chrXIV 783026 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.67;MQ0=16;QD=0.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:6:43,6,0 chrXIV 783076 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.83;MQ0=15;QD=0.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:6:43,6,0 chrXIV 783108 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.94;MQ0=10;QD=1.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,7:12:6:43,6,0 chrXIV 783111 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.94;MQ0=10;QD=1.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,7:12:6:43,6,0 chrXIV 783370 . G A 59.51 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=13.48;MQ0=4;QD=6.61;SB=-4.175e+01 GT:AD:DP:GQ:PL 1/1:0,8:9:12:92,12,0 chrXIV 783507 . T A 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=18;Dels=0.00;FS=3.854;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=25.41;MQ0=1;MQRankSum=0.049;QD=2.39;ReadPosRankSum=3.367;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:10,8:18:9:75,9,0 chrXIV 783538 . G T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;DP=34;Dels=0.00;FS=7.364;HaplotypeScore=18.2759;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=2;MQRankSum=1.576;QD=0.68;ReadPosRankSum=-0.741;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,14:34:53:53,0,214 chrXIV 783542 . A G 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DP=47;Dels=0.00;FS=2.532;HaplotypeScore=27.5529;MLEAC=1;MLEAF=0.500;MQ=25.35;MQ0=2;MQRankSum=0.779;QD=3.45;ReadPosRankSum=3.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,11:47:80:192,0,80 chrXIV 783551 . G A 398 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=30.2185;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=3;MQRankSum=-0.433;QD=6.75;ReadPosRankSum=0.186;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:48:431,48,0 chrXIV 783643 . T C 392 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=0;QD=3.38;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:48:425,48,0 chrXIV 783656 . C T 257 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=73.7071;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=0;QD=3.25;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,79:79:30:290,30,0 chrXIV 783657 . C G 227 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=73.7071;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=0;QD=2.87;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,73:79:30:260,30,0 chrXIV 783658 . C A 250 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=73.7071;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=0;QD=3.16;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,79:79:30:283,30,0 chrXIV 783664 . A G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.435;DP=79;Dels=0.00;FS=5.424;HaplotypeScore=79.1158;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=0;MQRankSum=1.831;QD=0.62;ReadPosRankSum=-6.090;SB=2.03 GT:AD:DP:GQ:PL 1/1:62,17:79:9:81,9,0 chrXIV 783674 . A G 72.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=60;Dels=0.00;FS=2.995;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=18.62;MQ0=2;MQRankSum=0.664;QD=1.21;ReadPosRankSum=2.359;SB=-7.752e+01 GT:AD:DP:GQ:PL 1/1:2,54:60:12:105,12,0 chrXIV 783720 . A G 430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.483;DP=38;Dels=0.00;FS=16.196;HaplotypeScore=6.7303;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=2;MQRankSum=-0.446;QD=11.32;ReadPosRankSum=-1.210;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:6,32:38:32:463,32,0 chrXIV 783749 . A G 839.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.339;DP=94;Dels=0.00;FS=83.167;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=6;MQRankSum=-1.976;QD=8.93;ReadPosRankSum=7.300;SB=-3.490e+02 GT:AD:DP:GQ:PL 0/1:30,63:94:99:869,0,394 chrXIV 783780 . A G 2100 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.272;DP=142;Dels=0.00;FS=3.828;HaplotypeScore=16.4431;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=5;MQRankSum=1.899;QD=14.79;ReadPosRankSum=0.472;SB=-8.857e+02 GT:AD:DP:GQ:PL 1/1:15,127:142:99:2133,121,0 chrXIV 783796 . G T 1976 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=144;Dels=0.00;FS=23.743;HaplotypeScore=31.7156;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=6;MQRankSum=-0.151;QD=13.72;ReadPosRankSum=3.179;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:6,138:144:99:2009,187,0 chrXIV 783832 . G A 1832 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=148;Dels=0.00;FS=5.308;HaplotypeScore=72.5655;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=6;MQRankSum=1.719;QD=12.38;ReadPosRankSum=3.666;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:18,129:148:99:1865,165,0 chrXIV 783868 . T A 689 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.912;DP=56;Dels=0.00;FS=5.563;HaplotypeScore=15.3389;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=2;MQRankSum=-2.260;QD=12.30;ReadPosRankSum=-4.925;SB=3.00 GT:AD:DP:GQ:PL 1/1:15,41:56:44:722,44,0 chrXIV 783869 . G C 349.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=55;Dels=0.00;FS=5.563;HaplotypeScore=15.3389;MLEAC=1;MLEAF=0.500;MQ=21.78;MQ0=1;MQRankSum=-1.584;QD=6.35;ReadPosRankSum=-4.944;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:15,39:55:61:379,0,61 chrXIV 783914 . T G 160.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=35.6766;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=0;MQRankSum=-0.946;QD=6.96;ReadPosRankSum=1.576;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:24:193,24,0 chrXIV 783918 . G T 160.03 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=31.0286;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=0;QD=7.27;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:193,24,0 chrXIV 783920 . A G 172.03 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=18.3639;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=0;QD=7.82;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:205,24,0 chrXIV 783922 . G T 171.03 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=16.4309;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=0;QD=7.77;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:204,24,0 chrXIV 783929 . A G 199.01 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=0;QD=4.33;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:27:232,27,0 chrXIV 783946 . G A 170.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DP=107;Dels=0.00;FS=53.291;HaplotypeScore=34.3020;MLEAC=1;MLEAF=0.500;MQ=21.90;MQ0=0;MQRankSum=1.911;QD=1.59;ReadPosRankSum=6.549;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:65,42:107:49:200,0,49 chrXIV 783947 . G T 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.904;DP=107;Dels=0.00;FS=7.347;HaplotypeScore=34.3020;MLEAC=1;MLEAF=0.500;MQ=21.90;MQ0=0;MQRankSum=0.202;QD=1.27;ReadPosRankSum=4.149;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,25:107:98:166,0,98 chrXIV 783968 . C A 419 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=19.6204;MLEAC=2;MLEAF=1.00;MQ=21.64;MQ0=0;QD=3.95;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:57:452,57,0 chrXIV 783972 . A C,G 305.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.8388;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.63;MQ0=0;QD=3.08;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/2:0,67,32:99:63:365,264,249,101,0,63 chrXIV 783976 . G A 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DP=98;Dels=0.00;FS=9.708;HaplotypeScore=25.6564;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=0;MQRankSum=-0.801;QD=1.83;ReadPosRankSum=5.387;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:72,26:98:68:209,0,68 chrXIV 783978 . C G 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.935;DP=92;Dels=0.00;FS=40.900;HaplotypeScore=25.6564;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=0;MQRankSum=-2.300;QD=0.43;ReadPosRankSum=-4.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,57:92:70:70,0,204 chrXIV 783984 . T G 286 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=38.0639;MLEAC=2;MLEAF=1.00;MQ=21.52;MQ0=0;QD=4.33;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:42:319,42,0 chrXIV 783985 . A G 289 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.227;DP=67;Dels=0.00;FS=36.583;HaplotypeScore=46.7762;MLEAC=2;MLEAF=1.00;MQ=21.46;MQ0=0;MQRankSum=1.992;QD=4.31;ReadPosRankSum=0.227;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:5,62:67:42:322,42,0 chrXIV 783986 . T A,C 222.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.990;DP=67;Dels=0.00;FS=22.952;HaplotypeScore=43.0356;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.46;MQ0=0;MQRankSum=1.515;QD=3.31;ReadPosRankSum=-0.203;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/2:5,36,26:67:78:282,178,163,104,0,78 chrXIV 784278 . G T 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DP=333;Dels=0.02;FS=16.970;HaplotypeScore=137.0272;MLEAC=1;MLEAF=0.500;MQ=20.71;MQ0=82;MQRankSum=-0.914;QD=0.11;ReadPosRankSum=-1.281;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:305,18:327:65:65,0,183 chrXV 145 . G C 33.08 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.406;DP=391;Dels=0.00;FS=2.942;HaplotypeScore=19.3203;MLEAC=1;MLEAF=0.500;MQ=22.98;MQ0=0;MQRankSum=-0.408;QD=0.08;ReadPosRankSum=-13.457;SB=-7.465e-02 GT:AD:DP:GQ:PL 0/1:222,169:391:15:63,0,15 chrXV 150 . C T 68.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.008;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=13.4559;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=0;MQRankSum=-0.858;QD=0.18;ReadPosRankSum=0.390;SB=-2.952e+01 GT:AD:DP:GQ:PL 1/1:3,370:373:12:101,12,0 chrXV 151 . A G 61.66 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.572;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=23.2115;MLEAC=1;MLEAF=0.500;MQ=23.10;MQ0=0;MQRankSum=-0.250;QD=0.17;ReadPosRankSum=-1.732;SB=12.33 GT:AD:DP:GQ:PL 1/1:1,172:371:12:94,12,0 chrXV 170 . T C 166.03 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=202.6656;MLEAC=2;MLEAF=1.00;MQ=23.67;MQ0=0;QD=0.57;SB=-7.304e+01 GT:AD:DP:GQ:PL 1/1:0,289:289:24:199,24,0 chrXV 193 . C T 124.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.658;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.6318;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=0;MQRankSum=-2.262;QD=0.81;ReadPosRankSum=-2.541;SB=-8.302e+01 GT:AD:DP:GQ:PL 0/1:10,144:154:47:154,0,47 chrXV 200 . T C 219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.077;DP=115;Dels=0.00;FS=20.540;HaplotypeScore=26.9657;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=0;MQRankSum=-0.843;QD=1.90;ReadPosRankSum=-0.597;SB=-4.202e+01 GT:AD:DP:GQ:PL 1/1:5,110:115:30:252,30,0 chrXV 207 . A G 161.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;DP=86;Dels=0.00;FS=5.088;HaplotypeScore=20.0670;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=0;MQRankSum=-0.005;QD=1.87;ReadPosRankSum=5.570;SB=-4.203e+01 GT:AD:DP:GQ:PL 0/1:24,62:86:20:191,0,20 chrXV 213 . G C 197.01 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=3.72;SB=-5.402e+01 GT:AD:DP:GQ:PL 1/1:0,50:53:27:230,27,0 chrXV 239 . C A 191.01 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=22.6307;MLEAC=2;MLEAF=1.00;MQ=22.97;MQ0=0;QD=4.06;SB=-7.602e+01 GT:AD:DP:GQ:PL 1/1:0,45:47:27:224,27,0 chrXV 281 . C T 146.06 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=9;QD=2.06;SB=-2.801e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:21:179,21,0 chrXV 293 . T A 1537 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.481;DP=202;Dels=0.00;FS=2.199;HaplotypeScore=60.2368;MLEAC=2;MLEAF=1.00;MQ=19.96;MQ0=9;MQRankSum=-3.004;QD=7.61;ReadPosRankSum=5.057;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:9,193:202:99:1570,212,0 chrXV 333 . T C 7471.01 filter AC=2;AF=1.00;AN=2;DP=710;Dels=0.00;FS=0.000;HaplotypeScore=13.2259;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=13;QD=10.52;SB=-6.574e+03 GT:AD:DP:GQ:PL 1/1:2,706:710:99:7471,892,0 chrXV 340 . G C 7314.01 filter AC=2;AF=1.00;AN=2;DP=696;Dels=0.00;FS=0.000;HaplotypeScore=82.9845;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=13;QD=10.51;SB=-6.537e+03 GT:AD:DP:GQ:PL 1/1:0,696:696:99:7314,889,0 chrXV 349 . A G 6187.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.347;DP=699;Dels=0.00;FS=27.673;HaplotypeScore=52.2915;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=12;MQRankSum=-2.380;QD=8.85;ReadPosRankSum=-2.458;SB=-5.552e+03 GT:AD:DP:GQ:PL 1/1:38,661:699:99:6187,242,0 chrXV 409 . T C 558 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.729;DP=40;Dels=0.00;FS=11.588;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=8;MQRankSum=1.276;QD=13.95;ReadPosRankSum=3.464;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:13,26:40:53:591,53,0 chrXV 426 . C T 451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=33;Dels=0.00;FS=2.722;HaplotypeScore=23.6325;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=1;MQRankSum=-0.973;QD=13.67;ReadPosRankSum=1.829;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:60:484,60,0 chrXV 455 . T C 517 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=0;QD=8.62;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:66:550,66,0 chrXV 467 . T C 481 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.95;MQ0=0;QD=6.97;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:63:514,63,0 chrXV 472 . A T 506 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=0;QD=7.44;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:63:539,63,0 chrXV 474 . G T 479 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=0;QD=7.04;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:63:512,63,0 chrXV 475 . C A 494 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=0;QD=7.26;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:63:527,63,0 chrXV 477 . A G 441 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.381;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=0;MQRankSum=-0.075;QD=6.39;ReadPosRankSum=1.682;SB=-7.209e-03 GT:AD:DP:GQ:PL 1/1:1,68:69:41:474,41,0 chrXV 483 . C A 834 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=6.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:867,105,0 chrXV 495 . T C 2187 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=225;Dels=0.00;FS=56.705;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=0;MQRankSum=1.630;QD=9.72;ReadPosRankSum=2.906;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:2220,272,0 chrXV 525 . T C 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.371;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=30.3182;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=1;MQRankSum=-0.450;QD=9.41;ReadPosRankSum=0.885;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:5,294:299:99:2847,353,0 chrXV 529 . C T 1902.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DP=303;Dels=0.00;FS=24.874;HaplotypeScore=47.6350;MLEAC=1;MLEAF=0.500;MQ=24.22;MQ0=2;MQRankSum=2.555;QD=6.28;ReadPosRankSum=-3.039;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:52,251:303:99:1932,0,258 chrXV 538 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.578;DP=303;Dels=0.00;FS=32.989;HaplotypeScore=285.0805;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=3;MQRankSum=-5.271;QD=0.07;ReadPosRankSum=6.538;SB=0.101 GT:AD:DP:GQ:PL 0/1:270,33:303:52:52,0,2032 chrXV 566 . A C 56.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.833;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=364.8216;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=3;MQRankSum=2.212;QD=0.24;ReadPosRankSum=0.622;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:221,14:236:86:86,0,324 chrXV 575 . C T 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=367.9748;MLEAC=2;MLEAF=1.00;MQ=24.31;MQ0=3;MQRankSum=-1.309;QD=10.38;ReadPosRankSum=-1.130;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:1,215:217:99:2285,278,0 chrXV 584 . T C 671.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;DP=168;Dels=0.00;FS=23.936;HaplotypeScore=32.0471;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=3;MQRankSum=4.342;QD=3.99;ReadPosRankSum=0.258;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:33,135:168:99:701,0,251 chrXV 594 . G A 235 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.8558;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=2;QD=2.58;SB=-7.802e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:30:268,30,0 chrXV 770 . G A 347 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=5;QD=13.35;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,25:26:45:380,45,0 chrXV 789 . T C 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DP=38;Dels=0.00;FS=42.024;HaplotypeScore=4.7182;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=5;MQRankSum=-0.158;QD=1.47;ReadPosRankSum=0.023;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,9:38:86:86,0,469 chrXV 842 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=2;QD=23.16;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1770,201,0 chrXV 935 . A T 43.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:76,9,0 chrXV 974 . C A 210.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=28.49;MQ0=0;MQRankSum=2.192;QD=11.06;ReadPosRankSum=-0.996;SB=-2.176e+00 GT:AD:DP:GQ:PL 0/1:2,17:19:12:240,0,12 chrXV 976 . T C 275 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=14.47;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:36:308,36,0 chrXV 989 . T C 465 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=1;QD=13.29;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:57:498,57,0 chrXV 993 . T C 412.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.7364;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=2;MQRankSum=1.222;QD=10.56;ReadPosRankSum=3.532;SB=-1.735e-02 GT:AD:DP:GQ:PL 1/1:7,32:39:29:445,29,0 chrXV 994 . T C 385 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.964;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.5829;MLEAC=2;MLEAF=1.00;MQ=26.73;MQ0=2;MQRankSum=3.060;QD=9.17;ReadPosRankSum=4.311;SB=-1.197e-02 GT:AD:DP:GQ:PL 1/1:10,32:42:32:418,32,0 chrXV 1002 . A G 435 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.733;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7206;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=2;MQRankSum=5.424;QD=7.25;ReadPosRankSum=4.370;SB=-1.200e-02 GT:AD:DP:GQ:PL 1/1:16,44:60:32:468,32,0 chrXV 1003 . A T 418.19 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.458;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.6940;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=2;MQRankSum=5.055;QD=6.86;ReadPosRankSum=4.510;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:18,43:61:8:450,8,0 chrXV 1005 . T C 411.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-5.043;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9248;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=2;MQRankSum=5.847;QD=6.54;ReadPosRankSum=4.818;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:19,44:63:9:444,9,0 chrXV 1014 . A G 551.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.343;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=57.2398;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=3;MQRankSum=6.113;QD=7.16;ReadPosRankSum=2.735;SB=-3.024e+00 GT:AD:DP:GQ:PL 0/1:22,55:77:24:581,0,24 chrXV 1018 . G C 534.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=57.2300;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=3;MQRankSum=5.897;QD=6.94;ReadPosRankSum=-0.919;SB=-2.831e+00 GT:AD:DP:GQ:PL 0/1:23,54:77:19:564,0,19 chrXV 1022 . C T 510.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.422;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8272;MLEAC=1;MLEAF=0.500;MQ=25.62;MQ0=3;MQRankSum=5.931;QD=6.71;ReadPosRankSum=-4.001;SB=-3.043e+00 GT:AD:DP:GQ:PL 0/1:23,53:76:19:540,0,19 chrXV 1028 . T C 547.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.456;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9046;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=3;MQRankSum=6.120;QD=7.29;ReadPosRankSum=-6.439;SB=-3.004e+00 GT:AD:DP:GQ:PL 0/1:22,53:75:27:577,0,27 chrXV 1126 . G T 1584 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.8509;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=1;QD=17.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1617,180,0 chrXV 1161 . A G 6376.01 filter AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=17.7488;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=1;QD=24.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,258:263:99:6376,723,0 chrXV 1245 . A G 6883.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.01;FS=0.000;HaplotypeScore=12.0248;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=24.49;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,273:278:99:6883,771,0 chrXV 1273 . G A 7005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=19.3512;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=3;MQRankSum=0.693;QD=23.59;ReadPosRankSum=0.956;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,292:297:99:7005,798,0 chrXV 1515 . T A 5580.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=332;Dels=0.00;FS=4.310;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=25.54;MQ0=73;MQRankSum=1.371;QD=16.81;ReadPosRankSum=1.692;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:1,331:332:99:5580,618,0 chrXV 1571 . A G 3056 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.257;DP=261;Dels=0.00;FS=7.227;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=121;MQRankSum=-1.305;QD=11.71;ReadPosRankSum=4.443;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:7,251:261:99:3089,351,0 chrXV 1732 . T C 3620.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=10;MQRankSum=-0.747;QD=18.19;ReadPosRankSum=2.359;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3620,411,0 chrXV 1737 . C T 3274.01 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=10;QD=18.50;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3274,369,0 chrXV 1743 . T A 3382.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.159;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=10;MQRankSum=-0.874;QD=18.89;ReadPosRankSum=3.315;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3382,375,0 chrXV 1896 . C T 3982.01 filter AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=44;QD=14.97;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:3982,435,0 chrXV 1898 . C T 3780.01 filter AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=45;QD=14.48;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,258:261:99:3780,432,0 chrXV 1911 . T C 2965 filter AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=46;QD=12.51;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,236:237:99:2998,345,0 chrXV 1955 . C T 1962 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=16;QD=12.91;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,151:152:99:1995,225,0 chrXV 1976 . A C 1076 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.218;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=39;MQRankSum=-4.384;QD=8.34;ReadPosRankSum=4.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,121:129:99:1109,126,0 chrXV 1998 . C T 1142 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.94;MQ0=41;QD=6.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:1175,129,0 chrXV 2055 . G C 903 filter AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.59;MQ0=56;QD=4.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:936,114,0 chrXV 2345 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.77;MQ0=72;QD=0.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:6:51,6,0 chrXV 11455 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=13;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=7;MQRankSum=0.736;QD=1.68;ReadPosRankSum=0.736;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,12:13:6:53,6,0 chrXV 11486 . T A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=37.6470;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=13;MQRankSum=-0.793;QD=0.31;ReadPosRankSum=-3.940;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:35,20:55:47:47,0,65 chrXV 11506 . C A 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;DP=193;Dels=0.04;FS=0.000;HaplotypeScore=54.5109;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=46;MQRankSum=3.568;QD=0.81;ReadPosRankSum=-2.183;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,22:186:99:186,0,1363 chrXV 11548 . T C 4771.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.860;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=72.6765;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=39;MQRankSum=-0.716;QD=19.24;ReadPosRankSum=4.168;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,241:248:99:4771,543,0 chrXV 11612 . G A 6164.01 filter AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=14.0425;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=13;QD=21.63;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,280:285:99:6164,708,0 chrXV 11735 . A C 463.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.739;DP=288;Dels=0.00;FS=13.640;HaplotypeScore=11.8190;MLEAC=1;MLEAF=0.500;MQ=24.58;MQ0=78;MQRankSum=3.252;QD=1.61;ReadPosRankSum=2.467;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:214,73:288:99:493,0,2523 chrXV 11801 . A G 4127.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.258;DP=291;Dels=0.00;FS=50.379;HaplotypeScore=11.5212;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=35;MQRankSum=0.866;QD=14.18;ReadPosRankSum=2.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:56,235:291:99:4127,272,0 chrXV 11806 . A G 4302.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.552;DP=294;Dels=0.00;FS=58.384;HaplotypeScore=7.7936;MLEAC=2;MLEAF=1.00;MQ=25.41;MQ0=28;MQRankSum=1.032;QD=14.63;ReadPosRankSum=1.443;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:44,250:294:99:4302,335,0 chrXV 11810 . C A 4490.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.605;DP=299;Dels=0.00;FS=67.681;HaplotypeScore=4.5117;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=28;MQRankSum=1.542;QD=15.02;ReadPosRankSum=-0.660;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:36,263:299:99:4490,438,0 chrXV 11855 . G A 5851.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.852;DP=359;Dels=0.00;FS=65.871;HaplotypeScore=36.5245;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=26;MQRankSum=4.756;QD=16.30;ReadPosRankSum=1.069;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:44,315:359:99:5851,654,0 chrXV 11862 . C G 5137.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=26.8136;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=26;QD=16.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,316:321:99:5137,594,0 chrXV 11863 . C T 4759.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=22.8702;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=26;QD=15.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,301:316:99:4759,552,0 chrXV 11876 . G A,T 3487.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.69;MQ0=26;QD=13.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,103,155:258:99:3487,2617,2506,870,0,534 chrXV 11913 . A G 1425 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.990;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=11;MQRankSum=1.854;QD=13.97;ReadPosRankSum=2.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1458,171,0 chrXV 11928 . T G 363 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.933;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=2;MQRankSum=0.828;QD=10.37;ReadPosRankSum=-3.088;SB=-1.180e-03 GT:AD:DP:GQ:PL 1/1:7,28:35:48:396,48,0 chrXV 22887 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=7.30;MQ0=37;QD=0.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:6:47,6,0 chrXV 23283 . T C 4835.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.038;DP=300;Dels=0.00;FS=8.235;HaplotypeScore=27.9123;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=57;MQRankSum=-1.754;QD=16.12;ReadPosRankSum=3.367;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:6,294:300:99:4835,575,0 chrXV 23419 . T C 2622 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=180;Dels=0.00;FS=13.485;HaplotypeScore=12.0071;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=25;MQRankSum=1.492;QD=14.57;ReadPosRankSum=2.402;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:2,177:180:99:2655,321,0 chrXV 23443 . T C 2531 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=183;Dels=0.00;FS=12.735;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=40;MQRankSum=-2.002;QD=13.83;ReadPosRankSum=3.275;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:4,179:183:99:2564,291,0 chrXV 23815 . A G 2616 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=249;Dels=0.00;FS=5.247;HaplotypeScore=17.6905;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=52;MQRankSum=-1.404;QD=10.51;ReadPosRankSum=3.416;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:6,242:249:99:2649,318,0 chrXV 24109 . G A 354.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;DP=126;Dels=0.00;FS=14.309;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=24.32;MQ0=12;MQRankSum=0.169;QD=2.81;ReadPosRankSum=6.213;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:57,69:126:99:384,0,553 chrXV 24115 . T C 301.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.863;DP=112;Dels=0.00;FS=14.515;HaplotypeScore=4.8375;MLEAC=1;MLEAF=0.500;MQ=26.02;MQ0=9;MQRankSum=-3.828;QD=2.69;ReadPosRankSum=5.928;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:43,65:112:99:331,0,529 chrXV 24129 . C T 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.024;DP=93;Dels=0.00;FS=11.337;HaplotypeScore=7.1178;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=16;MQRankSum=2.008;QD=0.61;ReadPosRankSum=-4.780;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,19:93:87:87,0,425 chrXV 24136 . A G 437 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=21;QD=5.60;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:5,73:78:57:470,57,0 chrXV 24145 . T C 364 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=20;QD=4.85;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:48:397,48,0 chrXV 24151 . A G 180.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.215;DP=72;Dels=0.00;FS=12.506;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=20;MQRankSum=-3.500;QD=2.50;ReadPosRankSum=3.627;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:5,66:72:27:213,27,0 chrXV 24190 . C A 1249 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=45;QD=10.96;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1282,141,0 chrXV 24299 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3990;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=17.64;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,176:183:99:3261,363,0 chrXV 24303 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=16.67;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:2967,342,0 chrXV 24335 . T A 2341 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=1;QD=13.85;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2374,279,0 chrXV 24352 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=1;QD=12.85;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,147:149:99:1947,225,0 chrXV 24362 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=1;QD=11.46;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:1786,201,0 chrXV 24376 . G C 2494 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.34;MQ0=1;QD=13.70;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2527,294,0 chrXV 24403 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.272;DP=225;Dels=0.00;FS=18.322;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=1;MQRankSum=0.254;QD=15.08;ReadPosRankSum=5.212;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:10,213:225:99:3393,387,0 chrXV 24407 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.3377;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=15.40;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:3449,390,0 chrXV 24486 . G C 5415.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=20.8312;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=3;QD=18.29;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,293:296:99:5415,621,0 chrXV 24626 . C A 2959.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.620;DP=263;Dels=0.00;FS=2.791;HaplotypeScore=6.2542;MLEAC=1;MLEAF=0.500;MQ=44.64;MQ0=0;MQRankSum=7.537;QD=11.25;ReadPosRankSum=-0.392;SB=-1.649e+03 GT:AD:DP:GQ:PL 0/1:99,163:263:99:2989,0,1530 chrXV 24634 . A G 2578.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.038;DP=258;Dels=0.00;FS=16.672;HaplotypeScore=13.3093;MLEAC=1;MLEAF=0.500;MQ=44.79;MQ0=0;MQRankSum=9.021;QD=9.99;ReadPosRankSum=4.061;SB=-1.424e+03 GT:AD:DP:GQ:PL 0/1:104,151:258:99:2608,0,1567 chrXV 24643 . C T 5315.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.2962;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=21.18;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5315,579,0 chrXV 24654 . A G 628.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.893;DP=230;Dels=0.00;FS=12.543;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=45.67;MQ0=0;MQRankSum=-10.175;QD=2.73;ReadPosRankSum=-3.179;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:158,72:230:99:658,0,2863 chrXV 24655 . T C 663.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.338;DP=226;Dels=0.00;FS=13.976;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=45.77;MQ0=0;MQRankSum=-9.368;QD=2.93;ReadPosRankSum=-3.541;SB=-2.620e+02 GT:AD:DP:GQ:PL 0/1:154,72:226:99:693,0,2862 chrXV 24669 . A G 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DP=213;Dels=0.00;FS=43.682;HaplotypeScore=12.4741;MLEAC=1;MLEAF=0.500;MQ=48.24;MQ0=0;MQRankSum=-9.222;QD=0.47;ReadPosRankSum=2.944;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,44:212:99:130,0,2922 chrXV 24671 . T C 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.223;DP=212;Dels=0.00;FS=64.645;HaplotypeScore=10.8967;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=0;MQRankSum=-9.478;QD=0.34;ReadPosRankSum=3.778;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,42:212:99:102,0,3143 chrXV 24674 . C T 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.154;DP=209;Dels=0.00;FS=52.933;HaplotypeScore=8.5307;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=0;MQRankSum=-8.829;QD=0.59;ReadPosRankSum=3.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,43:209:99:153,0,2771 chrXV 24675 . A G 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.755;DP=209;Dels=0.00;FS=64.592;HaplotypeScore=8.5307;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=0;MQRankSum=-9.195;QD=0.54;ReadPosRankSum=3.783;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,42:209:99:142,0,2973 chrXV 24676 . C A 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.834;DP=207;Dels=0.00;FS=64.481;HaplotypeScore=7.6089;MLEAC=1;MLEAF=0.500;MQ=48.50;MQ0=0;MQRankSum=-8.845;QD=0.61;ReadPosRankSum=3.648;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,42:207:99:156,0,2747 chrXV 24683 . G A 141.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.068;DP=212;Dels=0.00;FS=76.823;HaplotypeScore=12.0331;MLEAC=1;MLEAF=0.500;MQ=46.22;MQ0=0;MQRankSum=-9.879;QD=0.67;ReadPosRankSum=-0.280;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,57:212:99:171,0,2492 chrXV 24688 . A G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.974;DP=201;Dels=0.00;FS=74.659;HaplotypeScore=8.0350;MLEAC=1;MLEAF=0.500;MQ=45.76;MQ0=0;MQRankSum=-9.679;QD=0.56;ReadPosRankSum=-0.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,56:201:99:143,0,2363 chrXV 24700 . A C 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;DP=187;Dels=0.00;FS=58.040;HaplotypeScore=9.3406;MLEAC=1;MLEAF=0.500;MQ=42.78;MQ0=0;MQRankSum=-8.453;QD=0.92;ReadPosRankSum=-1.845;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,59:187:99:202,0,2097 chrXV 24703 . T C 176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.371;DP=184;Dels=0.00;FS=57.928;HaplotypeScore=13.9632;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=0;MQRankSum=-8.428;QD=0.96;ReadPosRankSum=-1.814;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,57:184:99:206,0,2081 chrXV 24711 . T A 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;DP=170;Dels=0.00;FS=52.776;HaplotypeScore=7.7227;MLEAC=1;MLEAF=0.500;MQ=42.34;MQ0=0;MQRankSum=-7.702;QD=0.78;ReadPosRankSum=-0.546;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,52:170:99:163,0,1900 chrXV 24717 . A G 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.545;DP=152;Dels=0.00;FS=44.859;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=42.23;MQ0=0;MQRankSum=-8.056;QD=0.55;ReadPosRankSum=-0.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,48:152:99:114,0,1835 chrXV 24722 . A T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.924;DP=170;Dels=0.00;FS=36.857;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=42.83;MQ0=0;MQRankSum=-8.051;QD=0.09;ReadPosRankSum=3.373;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,42:170:46:46,0,1856 chrXV 24811 . T C 375.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.349;DP=189;Dels=0.00;FS=42.703;HaplotypeScore=54.9023;MLEAC=1;MLEAF=0.500;MQ=49.42;MQ0=0;MQRankSum=-9.141;QD=1.98;ReadPosRankSum=3.539;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,68:189:99:405,0,1678 chrXV 24814 . C T 435.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.729;DP=191;Dels=0.00;FS=19.335;HaplotypeScore=57.2683;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=0;MQRankSum=-9.129;QD=2.28;ReadPosRankSum=3.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,68:191:99:465,0,1542 chrXV 24827 . G A 414.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.679;DP=189;Dels=0.00;FS=49.202;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=51.51;MQ0=0;MQRankSum=-10.181;QD=2.19;ReadPosRankSum=4.929;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,58:189:99:444,0,1842 chrXV 25181 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.01;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3017,330,0 chrXV 25318 . A G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=3.434;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=2;MQRankSum=-0.322;QD=21.18;ReadPosRankSum=1.611;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1897,222,0 chrXV 25319 . T A 1966 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=2;QD=22.86;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1999,219,0 chrXV 25350 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=2;QD=21.17;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1748,192,0 chrXV 25365 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=2;QD=19.84;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1501,174,0 chrXV 25722 . T C 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;DP=141;Dels=0.00;FS=18.199;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=11.02;MQ0=92;MQRankSum=0.515;QD=0.96;ReadPosRankSum=-1.081;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:74,66:141:99:166,0,190 chrXV 25746 . T C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=9.01;MQ0=128;MQRankSum=0.624;QD=0.17;ReadPosRankSum=1.112;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,71:180:60:60,0,385 chrXV 25764 . C T 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.1604;MLEAC=1;MLEAF=0.500;MQ=9.78;MQ0=126;MQRankSum=0.993;QD=0.25;ReadPosRankSum=-0.182;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:111,75:190:78:78,0,429 chrXV 25770 . C T 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.521;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.6377;MLEAC=1;MLEAF=0.500;MQ=12.15;MQ0=116;MQRankSum=0.291;QD=0.32;ReadPosRankSum=0.160;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:116,72:189:91:91,0,510 chrXV 25839 . T A 654 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.48;MQ0=33;QD=6.96;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:78:687,78,0 chrXV 25863 . A G 415 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.11;MQ0=17;QD=7.03;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:51:448,51,0 chrXV 25869 . T C 366 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.96;MQ0=18;QD=6.91;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:45:399,45,0 chrXV 25918 . T C 552.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=18.14;MQ0=20;MQRankSum=1.747;QD=5.81;ReadPosRankSum=1.465;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:44,50:95:99:582,0,329 chrXV 25953 . C T 899 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.51;MQ0=53;QD=6.92;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,129:130:99:932,111,0 chrXV 25974 . C T 651 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.38;MQ0=56;QD=5.17;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,124:126:78:684,78,0 chrXV 26016 . A G 78.51 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.2472;MLEAC=2;MLEAF=1.00;MQ=10.35;MQ0=38;QD=0.83;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,92:95:12:111,12,0 chrXV 26052 . T C 90.26 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.35;MQ0=7;QD=1.31;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,66:69:15:123,15,0 chrXV 26055 . G A 119.13 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.19;MQ0=7;QD=1.81;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,66:66:18:152,18,0 chrXV 26088 . A T 130.13 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.95;MQ0=9;QD=1.91;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,68:68:18:163,18,0 chrXV 26304 . C G 5883.01 filter AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=18.2699;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=25;QD=19.61;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,296:300:99:5883,701,0 chrXV 26481 . C T 968.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.813;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=1;MLEAF=0.500;MQ=22.85;MQ0=118;MQRankSum=-1.928;QD=3.01;ReadPosRankSum=-0.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,142:322:99:998,0,1655 chrXV 26494 . T C 910.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.771;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=12.8720;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=92;MQRankSum=-1.290;QD=2.91;ReadPosRankSum=3.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,138:313:99:940,0,2119 chrXV 26586 . C T 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;DP=121;Dels=0.00;FS=10.447;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=13.67;MQ0=97;MQRankSum=-0.669;QD=0.60;ReadPosRankSum=-1.303;SB=-4.625e+01 GT:AD:DP:GQ:PL 0/1:58,60:121:92:103,0,92 chrXV 26595 . T C 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;DP=124;Dels=0.00;FS=14.622;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=11.29;MQ0=107;MQRankSum=-0.927;QD=1.19;ReadPosRankSum=0.830;SB=-5.975e+01 GT:AD:DP:GQ:PL 0/1:60,64:124:47:177,0,47 chrXV 26826 . A G 358 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=4;QD=17.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,18:20:45:391,45,0 chrXV 26880 . C T 352 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=7.0096;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=1;QD=20.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:45:385,45,0 chrXV 27098 . C T 99.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=1;QD=9.02;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:132,15,0 chrXV 27129 . C T 89.26 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=1;QD=8.93;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:122,15,0 chrXV 27131 . G A 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.71;MQ0=1;QD=7.95;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:104,12,0 chrXV 27136 . C A 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=0;QD=11.59;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:102,12,0 chrXV 27137 . A T 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=0;QD=11.42;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:101,12,0 chrXV 27140 . C T 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=0;QD=10.59;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:96,12,0 chrXV 27205 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrXV 27212 . A T 77.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=0;QD=12.92;SB=-5.275e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:110,12,0 chrXV 27254 . A T 972 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=21.13;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1005,114,0 chrXV 27306 . C T 1483 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=5;QD=17.24;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1516,171,0 chrXV 27321 . T C 967 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=10;QD=11.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1000,114,0 chrXV 27322 . C G 919 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=11;QD=11.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:952,114,0 chrXV 27367 . T C 167.03 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.65;MQ0=33;QD=2.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:24:200,24,0 chrXV 27391 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.73;MQ0=45;QD=0.34;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:6:50,6,0 chrXV 27431 . A G 885 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=36;QD=10.41;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:918,111,0 chrXV 27515 . A G 3080 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=1;QD=18.01;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3113,357,0 chrXV 27624 . T C 706 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.80;MQ0=45;QD=7.06;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:84:739,84,0 chrXV 27661 . A C 1412 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=22;QD=10.95;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1445,165,0 chrXV 27686 . T C 1716 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.717;DP=145;Dels=0.00;FS=33.029;HaplotypeScore=5.0704;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=14;MQRankSum=0.169;QD=11.83;ReadPosRankSum=3.753;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:5,139:145:99:1749,207,0 chrXV 27783 . C A 240 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=18.32;MQ0=21;QD=5.33;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:30:273,30,0 chrXV 28055 . A G 982 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=22.84;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1015,114,0 chrXV 28169 . G A 1059 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;QD=14.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1092,120,0 chrXV 28363 . A G 750 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=20.83;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:87:783,87,0 chrXV 28425 . C T 127.13 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=3;QD=7.95;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:18:160,18,0 chrXV 28567 . G A 587 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=16.31;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:69:620,69,0 chrXV 28626 . C G 1784 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=11.08;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,159:161:99:1817,207,0 chrXV 28763 . A T 1327 filter AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.3358;MLEAC=2;MLEAF=1.00;MQ=21.11;MQ0=137;QD=6.57;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,201:202:99:1360,153,0 chrXV 28891 . A G 1265 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=104;Dels=0.01;FS=2.934;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=1;MQRankSum=0.036;QD=12.16;ReadPosRankSum=2.306;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1298,147,0 chrXV 28893 . C G 1046 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=1;QD=11.01;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1079,123,0 chrXV 28895 . C T 1107 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=1;QD=12.16;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1140,123,0 chrXV 29003 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.326;DP=44;Dels=0.00;FS=81.614;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=18.35;MQ0=0;MQRankSum=4.354;QD=0.47;ReadPosRankSum=-3.823;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:36,8:44:6:52,6,0 chrXV 29009 . T G 53.97 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=1.17;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,10:46:9:86,9,0 chrXV 29018 . A G 51.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.750;DP=44;Dels=0.00;FS=93.947;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=0;MQRankSum=3.823;QD=1.18;ReadPosRankSum=3.039;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:34,10:44:9:84,9,0 chrXV 29021 . G A 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=0;QD=1.07;SB=-2.296e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:9:79,9,0 chrXV 29022 . G A 57.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=44;Dels=0.00;FS=93.947;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=0;MQRankSum=3.823;QD=1.32;ReadPosRankSum=4.215;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:34,10:44:9:90,9,0 chrXV 29035 . T A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.193;DP=24;Dels=0.00;FS=61.164;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.27;MQ0=0;MQRankSum=3.995;QD=2.04;ReadPosRankSum=3.995;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:15,9:24:9:81,9,0 chrXV 29036 . C T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.604;DP=22;Dels=0.00;FS=56.967;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.76;MQ0=0;MQRankSum=3.873;QD=2.18;ReadPosRankSum=3.873;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:13,9:22:9:80,9,0 chrXV 29039 . A T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=4.00;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:80,9,0 chrXV 29064 . T G 479 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.691;DP=129;Dels=0.00;FS=29.521;HaplotypeScore=19.8728;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=4;MQRankSum=-3.301;QD=3.71;ReadPosRankSum=6.203;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:15,114:129:57:512,57,0 chrXV 29592 . A G 16621.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.179;DP=834;DS;Dels=0.00;FS=4.168;HaplotypeScore=60.3382;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=8.608;QD=19.93;ReadPosRankSum=11.508;SB=-8.712e+03 GT:AD:DP:GQ:PL 1/1:50,782:834:99:16621,1875,0 chrXV 29642 . A G 310.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.470;DP=735;Dels=0.00;FS=4.135;HaplotypeScore=213.9551;MLEAC=1;MLEAF=0.500;MQ=44.00;MQ0=0;MQRankSum=-8.032;QD=0.42;ReadPosRankSum=10.810;SB=-1.196e+03 GT:AD:DP:GQ:PL 0/1:551,184:735:99:340,0,6767 chrXV 29645 . G A 718.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.290;DP=713;Dels=0.00;FS=3.169;HaplotypeScore=201.8535;MLEAC=1;MLEAF=0.500;MQ=43.33;MQ0=0;MQRankSum=-7.300;QD=1.01;ReadPosRankSum=7.943;SB=-1.394e+03 GT:AD:DP:GQ:PL 0/1:379,205:713:99:748,0,5604 chrXV 29654 . A T 1485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DP=584;Dels=0.00;FS=4.212;HaplotypeScore=360.8501;MLEAC=1;MLEAF=0.500;MQ=44.90;MQ0=0;MQRankSum=-4.338;QD=2.54;ReadPosRankSum=8.600;SB=-1.677e+03 GT:AD:DP:GQ:PL 0/1:361,223:584:99:1515,0,3678 chrXV 29657 . T C 679.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;DP=604;Dels=0.00;FS=2.290;HaplotypeScore=190.5464;MLEAC=1;MLEAF=0.500;MQ=45.33;MQ0=0;MQRankSum=-2.900;QD=1.12;ReadPosRankSum=-8.419;SB=-1.031e+03 GT:AD:DP:GQ:PL 0/1:406,197:604:99:709,0,4250 chrXV 29669 . G A 2244.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.228;DP=651;Dels=0.00;FS=12.475;HaplotypeScore=49.9646;MLEAC=1;MLEAF=0.500;MQ=46.56;MQ0=0;MQRankSum=-2.894;QD=3.45;ReadPosRankSum=4.051;SB=-2.098e+03 GT:AD:DP:GQ:PL 0/1:381,267:651:99:2274,0,3721 chrXV 29682 . C G 3267.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;DP=595;Dels=0.00;FS=3.080;HaplotypeScore=47.6876;MLEAC=1;MLEAF=0.500;MQ=49.82;MQ0=0;MQRankSum=0.459;QD=5.49;ReadPosRankSum=3.009;SB=-2.241e+03 GT:AD:DP:GQ:PL 0/1:264,322:593:99:3267,0,2959 chrXV 29810 . G A 14807.01 filter AC=2;AF=1.00;AN=2;DP=667;Dels=0.00;FS=0.000;HaplotypeScore=23.0705;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=22.20;SB=-7.595e+03 GT:AD:DP:GQ:PL 1/1:0,663:667:99:14807,1606,0 chrXV 29825 . C T 14484.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=663;Dels=0.00;FS=3.354;HaplotypeScore=21.1949;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-0.379;QD=21.85;ReadPosRankSum=1.722;SB=-7.278e+03 GT:AD:DP:GQ:PL 1/1:1,657:663:99:14484,1566,0 chrXV 29909 . G T 11787.01 filter AC=2;AF=1.00;AN=2;DP=522;Dels=0.00;FS=0.000;HaplotypeScore=34.1560;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=22.58;SB=-6.105e+03 GT:AD:DP:GQ:PL 1/1:0,520:522:99:11787,1335,0 chrXV 29971 . T C 180.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.761;DP=450;Dels=0.00;FS=157.100;HaplotypeScore=13.1198;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=0;MQRankSum=-8.195;QD=0.40;ReadPosRankSum=2.834;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:364,83:450:99:210,0,6787 chrXV 29972 . G A 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.772;DP=450;Dels=0.00;FS=156.402;HaplotypeScore=13.8538;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=0;MQRankSum=-7.573;QD=0.48;ReadPosRankSum=2.768;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:366,84:450:99:244,0,6480 chrXV 29976 . G C 6342.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;DP=448;Dels=0.00;FS=146.082;HaplotypeScore=13.9227;MLEAC=1;MLEAF=0.500;MQ=51.64;MQ0=0;MQRankSum=8.513;QD=14.16;ReadPosRankSum=-2.798;SB=-3.486e+03 GT:AD:DP:GQ:PL 0/1:83,362:448:99:6342,0,189 chrXV 29984 . T A 6213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;DP=438;Dels=0.00;FS=124.862;HaplotypeScore=3.8198;MLEAC=1;MLEAF=0.500;MQ=52.05;MQ0=0;MQRankSum=9.163;QD=14.18;ReadPosRankSum=-3.832;SB=-3.018e+03 GT:AD:DP:GQ:PL 0/1:74,364:438:84:6213,0,84 chrXV 30125 . G T 1047.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.152;DP=348;Dels=0.00;FS=188.880;HaplotypeScore=29.1265;MLEAC=1;MLEAF=0.500;MQ=54.09;MQ0=0;MQRankSum=-10.527;QD=3.01;ReadPosRankSum=-1.110;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,95:348:99:1077,0,4553 chrXV 30131 . C G 647.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.763;DP=317;Dels=0.00;FS=158.137;HaplotypeScore=27.5491;MLEAC=1;MLEAF=0.500;MQ=54.21;MQ0=0;MQRankSum=-12.553;QD=2.04;ReadPosRankSum=-1.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,72:317:99:677,0,4583 chrXV 30134 . A T 542.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.064;DP=312;Dels=0.00;FS=120.682;HaplotypeScore=19.6623;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=0;MQRankSum=-12.116;QD=1.74;ReadPosRankSum=-2.881;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:241,71:312:99:572,0,4708 chrXV 30136 . G T 4475.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;DP=314;Dels=0.00;FS=151.145;HaplotypeScore=24.3397;MLEAC=1;MLEAF=0.500;MQ=53.99;MQ0=0;MQRankSum=12.006;QD=14.25;ReadPosRankSum=3.297;SB=-2.615e+03 GT:AD:DP:GQ:PL 0/1:69,244:314:99:4475,0,528 chrXV 30137 . A G 440.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.281;DP=312;Dels=0.00;FS=124.851;HaplotypeScore=26.7057;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=0;MQRankSum=-11.542;QD=1.41;ReadPosRankSum=-1.853;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:251,60:312:99:470,0,4382 chrXV 30140 . T A 353.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.760;DP=295;Dels=0.00;FS=128.591;HaplotypeScore=14.1415;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=0;MQRankSum=-10.631;QD=1.20;ReadPosRankSum=-3.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:238,57:295:99:383,0,4438 chrXV 30143 . C T 246.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.570;DP=290;Dels=0.00;FS=109.605;HaplotypeScore=13.2981;MLEAC=1;MLEAF=0.500;MQ=54.95;MQ0=0;MQRankSum=-10.392;QD=0.85;ReadPosRankSum=-3.065;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,48:290:99:276,0,4387 chrXV 30179 . C T 5310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=240;Dels=0.00;FS=3.066;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.016;QD=22.13;ReadPosRankSum=1.484;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:1,236:240:99:5310,576,0 chrXV 30248 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.09;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4529,504,0 chrXV 30265 . C G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.6162;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.714;QD=21.34;ReadPosRankSum=0.760;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4225,477,0 chrXV 30338 . G T 4928.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.50;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4928,552,0 chrXV 30485 . G A 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.801;DP=323;Dels=0.00;FS=182.719;HaplotypeScore=15.4453;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;MQRankSum=13.286;QD=15.69;ReadPosRankSum=6.913;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:110,211:323:99:5068,533,0 chrXV 30643 . C T 622.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.186;DP=465;Dels=0.00;FS=55.623;HaplotypeScore=32.3182;MLEAC=1;MLEAF=0.500;MQ=43.60;MQ0=0;MQRankSum=-7.250;QD=1.34;ReadPosRankSum=-3.504;SB=-2.910e+02 GT:AD:DP:GQ:PL 0/1:326,136:465:99:652,0,5624 chrXV 30707 . A G 11666.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.984;DP=557;Dels=0.00;FS=24.777;HaplotypeScore=53.3292;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;MQRankSum=-1.071;QD=20.94;ReadPosRankSum=4.115;SB=-5.314e+03 GT:AD:DP:GQ:PL 1/1:6,549:557:99:11666,1358,0 chrXV 30844 . C T 3223.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.526;DP=662;Dels=0.00;FS=49.399;HaplotypeScore=27.3111;MLEAC=1;MLEAF=0.500;MQ=36.64;MQ0=0;MQRankSum=0.019;QD=4.87;ReadPosRankSum=-1.543;SB=-1.191e+03 GT:AD:DP:GQ:PL 0/1:414,241:662:99:3253,0,7638 chrXV 30903 . A G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.018;DP=257;Dels=0.00;FS=5.812;HaplotypeScore=385.0629;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;MQRankSum=-1.059;QD=19.18;ReadPosRankSum=3.441;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:7,250:257:99:4928,576,0 chrXV 30914 . T G 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;DP=134;Dels=0.00;FS=91.682;HaplotypeScore=326.3730;MLEAC=1;MLEAF=0.500;MQ=30.71;MQ0=0;MQRankSum=-0.651;QD=0.46;ReadPosRankSum=0.055;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,14:134:91:91,0,1436 chrXV 30934 . C A 72.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.686;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=0.712;QD=1.36;ReadPosRankSum=0.223;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:41,12:53:99:102,0,558 chrXV 30935 . G T 81.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=1.095;QD=1.53;ReadPosRankSum=0.329;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:41,12:53:99:111,0,555 chrXV 30947 . T A 154.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;DP=110;Dels=0.00;FS=5.597;HaplotypeScore=75.3076;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=1;MQRankSum=0.253;QD=1.40;ReadPosRankSum=-0.746;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:82,28:110:99:184,0,427 chrXV 30991 . C A 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.149;DP=446;Dels=0.01;FS=107.645;HaplotypeScore=541.2296;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=2;MQRankSum=0.379;QD=0.26;ReadPosRankSum=-3.770;SB=-1.074e+03 GT:AD:DP:GQ:PL 0/1:261,181:442:99:145,0,1534 chrXV 30994 . A T 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.458;DP=475;Dels=0.01;FS=132.452;HaplotypeScore=688.5918;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=2;MQRankSum=3.258;QD=0.43;ReadPosRankSum=-5.575;SB=-1.013e+03 GT:AD:DP:GQ:PL 0/1:270,201:471:99:235,0,1497 chrXV 30997 . A T 895.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;DP=503;Dels=0.01;FS=193.537;HaplotypeScore=635.2831;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=2;MQRankSum=3.342;QD=1.78;ReadPosRankSum=3.740;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:389,109:499:99:925,0,908 chrXV 31010 . T G 277.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;DP=555;Dels=0.02;FS=84.907;HaplotypeScore=623.9426;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=2;MQRankSum=0.223;QD=0.50;ReadPosRankSum=-0.001;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:427,115:542:99:307,0,1969 chrXV 31029 . G A 746.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.696;DP=694;Dels=0.00;FS=0.319;HaplotypeScore=2163.0984;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=3;MQRankSum=2.758;QD=1.07;ReadPosRankSum=2.132;SB=-9.230e+02 GT:AD:DP:GQ:PL 0/1:519,173:694:99:776,0,2701 chrXV 31030 . C A 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.052;DP=690;Dels=0.05;FS=9.176;HaplotypeScore=2358.5503;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=3;MQRankSum=3.237;QD=0.26;ReadPosRankSum=-1.464;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:572,85:658:99:212,0,3167 chrXV 31031 . A G 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.780;DP=679;Dels=0.05;FS=4.181;HaplotypeScore=2472.4229;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=3;MQRankSum=2.989;QD=0.17;ReadPosRankSum=1.595;SB=-5.630e+02 GT:AD:DP:GQ:PL 0/1:502,144:647:99:148,0,3338 chrXV 31033 . A T 222.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.961;DP=682;Dels=0.05;FS=5.346;HaplotypeScore=2751.9759;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=3;MQRankSum=3.605;QD=0.33;ReadPosRankSum=-2.276;SB=-2.410e+02 GT:AD:DP:GQ:PL 0/1:478,88:650:99:252,0,2739 chrXV 31062 . T G 985.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.166;DP=556;Dels=0.00;FS=24.227;HaplotypeScore=238.6377;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=5;MQRankSum=2.227;QD=1.77;ReadPosRankSum=4.033;SB=-1.733e+03 GT:AD:DP:GQ:PL 0/1:357,198:556:99:1015,0,3104 chrXV 31063 . C T 1013.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.767;DP=552;Dels=0.00;FS=10.896;HaplotypeScore=273.6750;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=5;MQRankSum=3.582;QD=1.84;ReadPosRankSum=4.676;SB=-1.612e+03 GT:AD:DP:GQ:PL 0/1:367,185:552:99:1043,0,2935 chrXV 31064 . A T 2233.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=545;Dels=0.00;FS=16.440;HaplotypeScore=278.1518;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=5;MQRankSum=-2.152;QD=4.10;ReadPosRankSum=2.809;SB=-1.150e+03 GT:AD:DP:GQ:PL 0/1:280,265:545:99:2263,0,1740 chrXV 31065 . G A 1115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.274;DP=545;Dels=0.00;FS=25.725;HaplotypeScore=332.7190;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=5;MQRankSum=3.677;QD=2.05;ReadPosRankSum=2.843;SB=-1.857e+03 GT:AD:DP:GQ:PL 0/1:348,197:545:99:1145,0,2723 chrXV 31069 . C A 1206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.924;DP=525;Dels=0.00;FS=19.807;HaplotypeScore=425.8731;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=5;MQRankSum=3.296;QD=2.30;ReadPosRankSum=1.047;SB=-1.934e+03 GT:AD:DP:GQ:PL 0/1:324,200:525:99:1236,0,2477 chrXV 31072 . A T 1142.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.210;DP=508;Dels=0.00;FS=23.843;HaplotypeScore=553.4392;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=5;MQRankSum=5.577;QD=2.25;ReadPosRankSum=-0.958;SB=-1.845e+03 GT:AD:DP:GQ:PL 0/1:300,204:508:99:1172,0,2548 chrXV 31075 . A T 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.620;DP=498;Dels=0.03;FS=127.606;HaplotypeScore=572.0544;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=5;MQRankSum=0.360;QD=0.37;ReadPosRankSum=0.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:419,64:483:99:212,0,3369 chrXV 31082 . G T 350.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;DP=459;Dels=0.03;FS=2.250;HaplotypeScore=614.6815;MLEAC=1;MLEAF=0.500;MQ=29.92;MQ0=4;MQRankSum=1.975;QD=0.76;ReadPosRankSum=-3.550;SB=-7.350e+02 GT:AD:DP:GQ:PL 0/1:317,126:444:99:380,0,2940 chrXV 31086 . G A 1589.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.409;DP=355;Dels=0.04;FS=54.634;HaplotypeScore=274.6940;MLEAC=1;MLEAF=0.500;MQ=31.12;MQ0=4;MQRankSum=2.960;QD=4.48;ReadPosRankSum=-7.722;SB=-9.450e+02 GT:AD:DP:GQ:PL 0/1:169,171:340:99:1619,0,1276 chrXV 31088 . G T 1493.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.517;DP=357;Dels=0.03;FS=51.829;HaplotypeScore=288.8462;MLEAC=1;MLEAF=0.500;MQ=31.27;MQ0=4;MQRankSum=2.183;QD=4.18;ReadPosRankSum=-7.794;SB=-9.620e+02 GT:AD:DP:GQ:PL 0/1:170,174:345:99:1523,0,1246 chrXV 31097 . T C 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.112;DP=394;Dels=0.00;FS=61.354;HaplotypeScore=271.2306;MLEAC=1;MLEAF=0.500;MQ=31.48;MQ0=3;MQRankSum=4.054;QD=0.59;ReadPosRankSum=5.981;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:340,53:394:99:262,0,2806 chrXV 31103 . A T 747.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DP=375;Dels=0.00;FS=239.115;HaplotypeScore=494.5287;MLEAC=1;MLEAF=0.500;MQ=31.94;MQ0=3;MQRankSum=-2.959;QD=1.99;ReadPosRankSum=3.054;SB=-2.920e+02 GT:AD:DP:GQ:PL 0/1:233,142:375:99:777,0,2426 chrXV 31109 . A G 319.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.097;DP=374;Dels=0.00;FS=18.328;HaplotypeScore=368.1923;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=3;MQRankSum=1.161;QD=0.85;ReadPosRankSum=1.008;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:297,77:374:99:349,0,2840 chrXV 31111 . A T 401.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.486;DP=397;Dels=0.00;FS=54.148;HaplotypeScore=469.8550;MLEAC=1;MLEAF=0.500;MQ=31.20;MQ0=3;MQRankSum=-5.390;QD=1.01;ReadPosRankSum=-3.349;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:260,98:397:99:431,0,2515 chrXV 31114 . T A 1147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;DP=427;Dels=0.00;FS=28.376;HaplotypeScore=357.7047;MLEAC=1;MLEAF=0.500;MQ=31.03;MQ0=3;MQRankSum=-6.945;QD=2.69;ReadPosRankSum=-0.807;SB=-1.661e+03 GT:AD:DP:GQ:PL 0/1:206,221:427:99:1177,0,2642 chrXV 31125 . A G 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797;DP=664;Dels=0.00;FS=65.846;HaplotypeScore=217.0727;MLEAC=1;MLEAF=0.500;MQ=31.37;MQ0=2;MQRankSum=-0.308;QD=0.13;ReadPosRankSum=8.655;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:558,92:664:99:119,0,6960 chrXV 31136 . C T 9927.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.943;DP=893;Dels=0.00;FS=9.756;HaplotypeScore=278.2874;MLEAC=1;MLEAF=0.500;MQ=31.29;MQ0=0;MQRankSum=-6.517;QD=11.12;ReadPosRankSum=-1.883;SB=-7.463e+03 GT:AD:DP:GQ:PL 0/1:112,780:893:99:9927,0,356 chrXV 31199 . C T 11902.01 filter AC=2;AF=1.00;AN=2;DP=733;DS;Dels=0.00;FS=0.000;HaplotypeScore=142.1996;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=16.24;SB=-7.158e+03 GT:AD:DP:GQ:PL 1/1:1,728:733:99:11902,1375,0 chrXV 31214 . G A 587.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.965;DP=300;DS;Dels=0.01;FS=6.250;HaplotypeScore=414.5299;MLEAC=1;MLEAF=0.500;MQ=29.43;MQ0=0;MQRankSum=-3.202;QD=1.96;ReadPosRankSum=9.165;SB=-6.340e+02 GT:AD:DP:GQ:PL 0/1:182,116:298:99:617,0,2046 chrXV 31216 . A T 193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;DP=351;DS;Dels=0.01;FS=6.598;HaplotypeScore=296.6621;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=1;MQRankSum=-3.088;QD=0.55;ReadPosRankSum=7.712;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:321,26:349:99:223,0,1652 chrXV 31220 . A G 689.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.409;DP=300;DS;Dels=0.01;FS=37.944;HaplotypeScore=384.7623;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=1;MQRankSum=-2.487;QD=2.30;ReadPosRankSum=-3.963;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,56:298:99:719,0,1224 chrXV 31223 . G T 683.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;DP=282;DS;Dels=0.01;FS=8.359;HaplotypeScore=382.1526;MLEAC=1;MLEAF=0.500;MQ=27.35;MQ0=1;MQRankSum=-1.016;QD=2.42;ReadPosRankSum=-2.007;SB=-3.830e+02 GT:AD:DP:GQ:PL 0/1:170,103:280:99:713,0,620 chrXV 31225 . A G 138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621;DP=263;DS;Dels=0.01;FS=98.450;HaplotypeScore=303.0572;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=1;MQRankSum=3.372;QD=0.52;ReadPosRankSum=1.203;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:164,63:261:99:168,0,875 chrXV 31242 . T G 269.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.446;DP=351;DS;Dels=0.00;FS=69.280;HaplotypeScore=360.4478;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=1;MQRankSum=3.177;QD=0.77;ReadPosRankSum=-0.632;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:262,89:351:99:299,0,1441 chrXV 31243 . C T 256.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.445;DP=350;DS;Dels=0.00;FS=69.325;HaplotypeScore=421.0216;MLEAC=1;MLEAF=0.500;MQ=27.25;MQ0=1;MQRankSum=2.030;QD=0.73;ReadPosRankSum=0.122;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:262,88:350:99:286,0,1433 chrXV 31244 . A T 1136.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;DP=352;DS;Dels=0.00;FS=16.547;HaplotypeScore=452.9163;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=1;MQRankSum=0.776;QD=3.23;ReadPosRankSum=1.338;SB=-6.390e+02 GT:AD:DP:GQ:PL 0/1:165,187:352:99:1166,0,619 chrXV 31245 . G A 299.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.544;DP=351;DS;Dels=0.00;FS=69.647;HaplotypeScore=486.9357;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=1;MQRankSum=-0.493;QD=0.85;ReadPosRankSum=1.997;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:261,90:351:99:329,0,1442 chrXV 31248 . G A 766.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.537;DP=368;DS;Dels=0.00;FS=7.230;HaplotypeScore=615.8926;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=1;MQRankSum=1.732;QD=2.08;ReadPosRankSum=-1.751;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:258,109:368:99:796,0,918 chrXV 31249 . C A 309.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.954;DP=368;DS;Dels=0.00;FS=69.896;HaplotypeScore=678.2785;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=1;MQRankSum=2.083;QD=0.84;ReadPosRankSum=1.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,98:368:99:339,0,1330 chrXV 31298 . G A 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.172;DP=392;Dels=0.00;FS=14.872;HaplotypeScore=470.5103;MLEAC=1;MLEAF=0.500;MQ=30.12;MQ0=0;MQRankSum=1.189;QD=0.18;ReadPosRankSum=-6.150;SB=-4.810e+02 GT:AD:DP:GQ:PL 0/1:235,153:392:99:100,0,3409 chrXV 31310 . A T 5056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=354;Dels=0.00;FS=2.836;HaplotypeScore=105.7603;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;MQRankSum=0.454;QD=14.28;ReadPosRankSum=2.068;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:2,352:354:99:5056,573,0 chrXV 31361 . A G 1602.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.169;DP=330;Dels=0.00;FS=36.504;HaplotypeScore=14.0348;MLEAC=1;MLEAF=0.500;MQ=31.80;MQ0=0;MQRankSum=-2.631;QD=4.85;ReadPosRankSum=1.614;SB=-9.350e+02 GT:AD:DP:GQ:PL 0/1:194,136:330:99:1632,0,3984 chrXV 31369 . A T 6477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=305;Dels=0.00;FS=9.291;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;MQRankSum=-0.589;QD=21.24;ReadPosRankSum=2.977;SB=-3.569e+03 GT:AD:DP:GQ:PL 1/1:3,302:305:99:6477,749,0 chrXV 31394 . C T 5371.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=22.19;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5371,614,0 chrXV 31429 . T C 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=130;Dels=0.00;FS=7.176;HaplotypeScore=20.7744;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;MQRankSum=0.718;QD=13.85;ReadPosRankSum=2.391;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,123:130:99:1833,224,0 chrXV 31440 . A G 1204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.849;DP=106;Dels=0.00;FS=19.765;HaplotypeScore=84.5075;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;MQRankSum=-0.376;QD=11.36;ReadPosRankSum=4.095;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:6,100:106:99:1237,150,0 chrXV 31466 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=33.38;MQ0=0;QD=13.43;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:2437,273,0 chrXV 31493 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=14.52;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:3689,414,0 chrXV 31504 . T G 1781.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;DP=269;Dels=0.00;FS=203.039;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=32.87;MQ0=0;MQRankSum=0.990;QD=6.62;ReadPosRankSum=1.105;SB=-1.831e+03 GT:AD:DP:GQ:PL 0/1:89,180:269:99:1811,0,1204 chrXV 31525 . T G 1962.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;DP=277;Dels=0.01;FS=159.778;HaplotypeScore=54.5306;MLEAC=1;MLEAF=0.500;MQ=32.27;MQ0=0;MQRankSum=1.149;QD=7.08;ReadPosRankSum=0.669;SB=-1.865e+03 GT:AD:DP:GQ:PL 0/1:94,181:275:99:1992,0,1269 chrXV 31545 . G T 1833.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.781;DP=226;Dels=0.00;FS=84.716;HaplotypeScore=10.9321;MLEAC=1;MLEAF=0.500;MQ=29.79;MQ0=0;MQRankSum=1.285;QD=8.11;ReadPosRankSum=-1.442;SB=-1.162e+03 GT:AD:DP:GQ:PL 0/1:72,149:226:99:1863,0,987 chrXV 31546 . C T 1655.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DP=221;Dels=0.00;FS=81.267;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=29.85;MQ0=0;MQRankSum=0.235;QD=7.49;ReadPosRankSum=-2.004;SB=-1.156e+03 GT:AD:DP:GQ:PL 0/1:69,149:221:99:1685,0,946 chrXV 31563 . A G 683.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.591;DP=183;Dels=0.00;FS=37.334;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=29.57;MQ0=0;MQRankSum=-0.350;QD=3.73;ReadPosRankSum=2.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,53:183:99:713,0,1577 chrXV 31564 . C G 1448.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.749;DP=168;Dels=0.00;FS=33.203;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=0;MQRankSum=1.363;QD=8.62;ReadPosRankSum=-1.231;SB=-5.190e+02 GT:AD:DP:GQ:PL 0/1:52,115:168:99:1478,0,742 chrXV 31566 . A G 1387.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;DP=167;Dels=0.00;FS=36.046;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=0;MQRankSum=0.326;QD=8.31;ReadPosRankSum=0.016;SB=-5.030e+02 GT:AD:DP:GQ:PL 0/1:54,113:167:99:1417,0,687 chrXV 31571 . C T 502.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;DP=155;Dels=0.00;FS=29.890;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=0.290;QD=3.24;ReadPosRankSum=0.052;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,45:155:99:532,0,1344 chrXV 31575 . G A 1246.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.820;DP=137;Dels=0.00;FS=24.535;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=0;MQRankSum=1.372;QD=9.09;ReadPosRankSum=-0.496;SB=-4.780e+02 GT:AD:DP:GQ:PL 0/1:36,101:137:99:1276,0,484 chrXV 31577 . G A 477.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.591;DP=137;Dels=0.00;FS=24.409;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=0;MQRankSum=-0.882;QD=3.48;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,34:137:99:507,0,1206 chrXV 31583 . A G 411.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;DP=122;Dels=0.00;FS=14.369;HaplotypeScore=3.4448;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=0;MQRankSum=-0.027;QD=3.37;ReadPosRankSum=-0.342;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,30:122:99:441,0,1154 chrXV 31585 . G A 403.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.103;DP=117;Dels=0.00;FS=16.863;HaplotypeScore=2.6562;MLEAC=1;MLEAF=0.500;MQ=27.41;MQ0=0;MQRankSum=-0.209;QD=3.44;ReadPosRankSum=-1.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,30:117:99:433,0,1044 chrXV 31587 . T G 973.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.193;DP=113;Dels=0.00;FS=14.533;HaplotypeScore=3.6456;MLEAC=1;MLEAF=0.500;MQ=27.35;MQ0=0;MQRankSum=0.666;QD=8.61;ReadPosRankSum=1.895;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:30,83:113:99:1003,0,458 chrXV 31589 . A G 346.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.686;DP=112;Dels=0.00;FS=11.984;HaplotypeScore=2.7515;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=0;MQRankSum=2.637;QD=3.09;ReadPosRankSum=-1.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,29:112:99:376,0,1044 chrXV 31590 . T G 685.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.345;DP=86;Dels=0.00;FS=10.430;HaplotypeScore=2.7515;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=0;MQRankSum=-0.276;QD=7.97;ReadPosRankSum=6.048;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:30,56:86:99:715,0,453 chrXV 31591 . T C 736.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.494;DP=86;Dels=0.00;FS=10.467;HaplotypeScore=2.7515;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=0;MQRankSum=0.347;QD=8.56;ReadPosRankSum=6.531;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:29,57:86:99:766,0,391 chrXV 31592 . A T 322.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.808;DP=84;Dels=0.00;FS=10.422;HaplotypeScore=2.7515;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=0;MQRankSum=0.450;QD=3.83;ReadPosRankSum=-6.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,27:84:99:352,0,800 chrXV 31594 . A T 796.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;DP=86;Dels=0.00;FS=10.333;HaplotypeScore=2.7515;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=0;MQRankSum=0.251;QD=9.26;ReadPosRankSum=6.262;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:27,59:86:99:826,0,314 chrXV 31595 . G A 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.979;DP=83;Dels=0.00;FS=7.418;HaplotypeScore=2.7515;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=0;MQRankSum=0.428;QD=3.52;ReadPosRankSum=-5.257;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,22:83:99:322,0,823 chrXV 31596 . C G 770.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.577;DP=84;Dels=0.00;FS=7.418;HaplotypeScore=2.7515;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=2.038;QD=9.17;ReadPosRankSum=5.185;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:22,61:84:99:800,0,276 chrXV 31598 . A T 827.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.163;DP=84;Dels=0.00;FS=7.406;HaplotypeScore=1.9628;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=0.992;QD=9.85;ReadPosRankSum=5.672;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:22,62:84:99:857,0,193 chrXV 31603 . A C 893.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;DP=89;Dels=0.00;FS=6.856;HaplotypeScore=3.3007;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=0;MQRankSum=1.375;QD=10.03;ReadPosRankSum=3.841;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:15,74:89:89:923,0,89 chrXV 31639 . T G 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=4.696;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;MQRankSum=0.618;QD=20.62;ReadPosRankSum=1.672;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2404,276,0 chrXV 31750 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=20.04;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1456,159,0 chrXV 31776 . A G 581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=29;Dels=0.00;FS=9.553;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;MQRankSum=-0.043;QD=20.03;ReadPosRankSum=2.281;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:2,27:29:72:614,72,0 chrXV 31789 . G A 239 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=0;QD=19.92;SB=-9.198e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:272,33,0 chrXV 31790 . T A 222 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=0;QD=20.18;SB=-9.195e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:30:255,30,0 chrXV 31801 . C T 317 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=21.13;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:350,39,0 chrXV 31814 . A C 426 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=0;QD=17.04;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:54:459,54,0 chrXV 31853 . C T 1252 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1285,138,0 chrXV 31864 . C T 1207 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1240,135,0 chrXV 32318 . T C 173.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;MQRankSum=-0.948;QD=3.26;ReadPosRankSum=1.667;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:1,52:53:24:206,24,0 chrXV 32330 . G A 275 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=5.50;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:33:308,33,0 chrXV 32349 . T C 257 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=42.5465;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;MQRankSum=-0.531;QD=5.14;ReadPosRankSum=2.860;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:3,47:50:33:290,33,0 chrXV 32374 . A G 312 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=5.29;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:39:345,39,0 chrXV 32379 . C T 331 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=5.52;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:42:364,42,0 chrXV 32386 . C A 433 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=53.5202;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=6.19;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:51:466,51,0 chrXV 32395 . A G 499 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;QD=7.23;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:60:532,60,0 chrXV 32791 . A G 2356 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=16.03;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2389,270,0 chrXV 32803 . T C 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;MQRankSum=0.569;QD=13.25;ReadPosRankSum=1.707;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1888,219,0 chrXV 32809 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=129.7068;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=12.91;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1944,219,0 chrXV 32838 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=127.1427;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;QD=11.40;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1755,195,0 chrXV 32865 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=14.22;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2266,249,0 chrXV 33511 . C G 4645.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.6143;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.00;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4645,522,0 chrXV 33546 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.50;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4860,552,0 chrXV 34108 . G C 2339 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9563;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.07;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2372,273,0 chrXV 34277 . C T 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=3.146;HaplotypeScore=5.9869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.560;QD=21.18;ReadPosRankSum=1.466;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2787,300,0 chrXV 34711 . T C 4346.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.4755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.12;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4346,492,0 chrXV 35071 . T C 5097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.639;DP=233;Dels=0.00;FS=11.998;HaplotypeScore=14.7574;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.540;QD=21.88;ReadPosRankSum=3.686;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:5,228:233:99:5097,591,0 chrXV 35251 . A T 5702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=249;Dels=0.00;FS=6.545;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.173;QD=22.90;ReadPosRankSum=2.341;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:5702,621,0 chrXV 35297 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.517;QD=21.15;ReadPosRankSum=1.696;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4081,474,0 chrXV 35486 . A T 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=95.6604;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.926;QD=22.13;ReadPosRankSum=1.672;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2600,288,0 chrXV 35596 . A T 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.379;QD=22.56;ReadPosRankSum=1.678;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1477,162,0 chrXV 35855 . T C 922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.096;QD=23.64;ReadPosRankSum=2.324;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:99:955,111,0 chrXV 36047 . A G 1803 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.49;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1836,210,0 chrXV 36053 . C G 1795 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.94;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1828,207,0 chrXV 36335 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=22.20;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1565,180,0 chrXV 36385 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.51;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1879,213,0 chrXV 36403 . A G 1793 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.07;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1826,207,0 chrXV 36407 . T C 1705 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=18.74;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1738,195,0 chrXV 36449 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.77;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1753,198,0 chrXV 36485 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.17;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2015,216,0 chrXV 36550 . C G 1715 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.71;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1748,198,0 chrXV 36551 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.72;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1836,198,0 chrXV 36648 . G C 2704 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.63;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2737,315,0 chrXV 36680 . G A 3146 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.13;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3179,357,0 chrXV 37058 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.6565;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.50;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3569,405,0 chrXV 37205 . T C 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=195;Dels=0.00;FS=2.942;HaplotypeScore=16.4103;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.095;QD=21.24;ReadPosRankSum=2.272;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4141,468,0 chrXV 37274 . A C 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;DP=243;Dels=0.00;FS=4.863;HaplotypeScore=17.1038;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.746;QD=21.79;ReadPosRankSum=1.703;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,238:243:99:5294,588,0 chrXV 37391 . T C 5601.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.4299;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.31;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5601,630,0 chrXV 37432 . T G 4936.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.4628;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.57;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,235:240:99:4936,567,0 chrXV 37686 . G T 5154.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.66;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5154,561,0 chrXV 37742 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.78;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5171,573,0 chrXV 38001 . C G 2700 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.4298;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.43;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2733,312,0 chrXV 38024 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3642;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.79;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2549,282,0 chrXV 38177 . A C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.140;DP=143;Dels=0.00;FS=6.885;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.335;QD=20.65;ReadPosRankSum=2.415;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2986,345,0 chrXV 38473 . A T 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.6112;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.448;QD=21.28;ReadPosRankSum=1.702;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2501,282,0 chrXV 38704 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2089,228,0 chrXV 38741 . A C 2027 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.13;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2060,234,0 chrXV 38791 . A C 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.032;QD=21.85;ReadPosRankSum=1.695;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2109,243,0 chrXV 38812 . A G 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=105;Dels=0.00;FS=3.004;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.582;QD=20.83;ReadPosRankSum=2.403;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2220,252,0 chrXV 39042 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.205;QD=22.91;ReadPosRankSum=1.650;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2966,336,0 chrXV 39070 . G C 3113 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.08;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3146,363,0 chrXV 39107 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6967;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.47;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4058,453,0 chrXV 39380 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=17.67;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2171,243,0 chrXV 39382 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=18.38;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2220,243,0 chrXV 39402 . G C 1863 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=15.15;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1896,219,0 chrXV 39405 . T A 1754 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=119;Dels=0.00;FS=5.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;MQRankSum=-0.703;QD=14.74;ReadPosRankSum=2.941;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:1787,201,0 chrXV 39407 . T C 1602 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;MQRankSum=-1.587;QD=13.46;ReadPosRankSum=1.674;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1635,192,0 chrXV 39416 . A G 1329 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=3.826;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.858;QD=11.97;ReadPosRankSum=1.701;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1362,159,0 chrXV 39418 . G C 1350 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.27;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1383,159,0 chrXV 39421 . A G 1343 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.943;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=1.383;QD=11.29;ReadPosRankSum=1.703;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1376,156,0 chrXV 39434 . T A 1533 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=12.57;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1566,171,0 chrXV 39466 . A G 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;MQRankSum=-0.284;QD=12.70;ReadPosRankSum=1.655;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:1747,201,0 chrXV 39499 . A T 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=1.295;QD=18.76;ReadPosRankSum=1.645;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2266,246,0 chrXV 39516 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.58;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2667,297,0 chrXV 39607 . A C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;MQRankSum=-0.812;QD=20.18;ReadPosRankSum=1.678;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2677,309,0 chrXV 39768 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.86;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2436,276,0 chrXV 39776 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.66;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2368,258,0 chrXV 39810 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=115;Dels=0.00;FS=6.214;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.205;QD=16.98;ReadPosRankSum=2.407;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:1986,222,0 chrXV 39886 . G T 2609 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.07;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2642,300,0 chrXV 39893 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.86;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2640,300,0 chrXV 40057 . C G 4151.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.56;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4151,474,0 chrXV 40365 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.64;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3398,366,0 chrXV 40497 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.87;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3042,336,0 chrXV 40570 . A G 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.413;QD=21.08;ReadPosRankSum=2.346;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2036,237,0 chrXV 40593 . A G 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.141;QD=20.32;ReadPosRankSum=2.373;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2004,228,0 chrXV 40697 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.81;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2236,258,0 chrXV 40834 . A G 1992 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.59;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2025,228,0 chrXV 41027 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.402;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-1.045;QD=21.80;ReadPosRankSum=1.643;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2584,294,0 chrXV 41050 . A G 2354 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0419;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.02;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2387,273,0 chrXV 41221 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.875;QD=21.43;ReadPosRankSum=1.713;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4008,456,0 chrXV 41378 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.49;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4179,474,0 chrXV 41470 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.59;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3779,441,0 chrXV 41495 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6386;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.60;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3780,411,0 chrXV 41838 . G A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.91;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3666,393,0 chrXV 41876 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.50;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3634,408,0 chrXV 41887 . C A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.13;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3486,390,0 chrXV 41957 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=138;Dels=0.00;FS=13.025;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.072;QD=21.11;ReadPosRankSum=3.369;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2946,348,0 chrXV 42031 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.94;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2117,240,0 chrXV 42092 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=22.74;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3125,342,0 chrXV 42165 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.35;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2830,306,0 chrXV 42175 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.12;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2567,294,0 chrXV 42240 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=16.67;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1533,174,0 chrXV 42247 . G C 1376 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;QD=16.00;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1409,162,0 chrXV 42267 . T C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;MQRankSum=1.628;QD=12.86;ReadPosRankSum=1.697;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1332,150,0 chrXV 42278 . T C 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.4426;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;MQRankSum=-0.804;QD=11.67;ReadPosRankSum=1.670;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1340,153,0 chrXV 42290 . A C 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.549;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;MQRankSum=-1.617;QD=11.15;ReadPosRankSum=1.703;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:1393,159,0 chrXV 42291 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=11.12;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1390,159,0 chrXV 42487 . T A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=23.50;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3784,426,0 chrXV 42536 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=25.05;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3582,396,0 chrXV 42586 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.925;QD=24.54;ReadPosRankSum=1.706;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3289,378,0 chrXV 42784 . T C 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=1.063;QD=23.03;ReadPosRankSum=1.703;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2797,318,0 chrXV 42791 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=22.91;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2714,306,0 chrXV 42832 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.091;HaplotypeScore=7.3624;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;MQRankSum=-1.251;QD=20.38;ReadPosRankSum=1.636;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2234,255,0 chrXV 42859 . A G 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;MQRankSum=-0.647;QD=19.41;ReadPosRankSum=1.697;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1974,222,0 chrXV 43092 . A G 724 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=12.07;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:87:757,87,0 chrXV 43114 . A T 916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;MQRankSum=-0.445;QD=13.09;ReadPosRankSum=1.534;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:949,105,0 chrXV 43143 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=19.60;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1601,186,0 chrXV 43170 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=18.85;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1428,165,0 chrXV 43176 . A C 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;MQRankSum=-1.247;QD=18.44;ReadPosRankSum=2.871;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1324,150,0 chrXV 43187 . A G 1115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;MQRankSum=-1.732;QD=18.58;ReadPosRankSum=1.675;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1148,132,0 chrXV 43188 . A G 1115 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=18.58;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1148,135,0 chrXV 43223 . G A 845 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=16.25;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:878,99,0 chrXV 43312 . G A 1023 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=8.166;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;MQRankSum=-0.382;QD=17.34;ReadPosRankSum=1.615;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1056,123,0 chrXV 43313 . A G 987 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=8.092;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;MQRankSum=-0.060;QD=17.02;ReadPosRankSum=1.553;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1020,120,0 chrXV 43318 . A G 1000 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=17.86;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1033,120,0 chrXV 43337 . C T 593 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=10.98;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:72:626,72,0 chrXV 43351 . C T 293 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=7.32;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:36:326,36,0 chrXV 43360 . A G 273 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=6.66;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:36:306,36,0 chrXV 43366 . A G 165.03 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=4.72;SB=-9.304e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:24:198,24,0 chrXV 43374 . A G 214 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=0;QD=6.29;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:30:247,30,0 chrXV 43376 . T C 194.01 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=5.24;SB=-9.202e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:27:227,27,0 chrXV 43414 . T C 1016 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;QD=19.17;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1049,120,0 chrXV 43479 . A T 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DP=100;Dels=0.00;FS=3.098;HaplotypeScore=88.0288;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;MQRankSum=0.727;QD=22.60;ReadPosRankSum=1.594;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2293,255,0 chrXV 43511 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=8.4937;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=19.26;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2344,270,0 chrXV 43599 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.02;FS=0.000;HaplotypeScore=4.4263;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=20.72;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1732,189,0 chrXV 43623 . T C 1221 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=18.78;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1254,144,0 chrXV 43625 . T C 1177 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=19.62;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1210,138,0 chrXV 43626 . C T 1224 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=20.40;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1257,138,0 chrXV 43628 . C G 1187 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=19.78;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1220,138,0 chrXV 43648 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=13.91;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:993,111,0 chrXV 43650 . A T 993 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=14.39;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1026,111,0 chrXV 43663 . A G 1114 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=13.11;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1147,132,0 chrXV 43666 . C A 1034 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=11.36;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1067,120,0 chrXV 43681 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.59;MQ0=0;QD=10.76;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1163,141,0 chrXV 43688 . G T 1368 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;QD=11.50;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1401,156,0 chrXV 43705 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;QD=11.96;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1660,189,0 chrXV 43753 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.25;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3132,357,0 chrXV 43786 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=19.29;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2560,288,0 chrXV 43817 . G C 1159 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=12.74;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1192,135,0 chrXV 43820 . G A 1156 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=12.70;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1189,129,0 chrXV 43834 . C T 907 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=9.97;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:940,108,0 chrXV 43840 . A C 869 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=0;QD=9.45;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:902,108,0 chrXV 43853 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=11.96;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1265,144,0 chrXV 43915 . T G 3455.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=20.57;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3455,393,0 chrXV 44046 . C G 2487 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=20.72;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2520,288,0 chrXV 44092 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.09;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2645,300,0 chrXV 44113 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.21;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2782,306,0 chrXV 44149 . T A 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.273;QD=19.20;ReadPosRankSum=1.706;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2586,291,0 chrXV 44176 . A G 2248 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.7254;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=17.98;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2281,261,0 chrXV 44181 . A G 2309 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=18.04;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2342,264,0 chrXV 44231 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.71;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2379,255,0 chrXV 44249 . T G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.669;DP=137;Dels=0.00;FS=2.584;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.507;QD=18.36;ReadPosRankSum=2.949;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2548,303,0 chrXV 44491 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.75;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4085,459,0 chrXV 44518 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.75;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3526,399,0 chrXV 44548 . T C 2623 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.82;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2656,300,0 chrXV 44554 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.969;QD=20.98;ReadPosRankSum=1.703;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2509,279,0 chrXV 44801 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.61;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1595,174,0 chrXV 45210 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3028,357,0 chrXV 46201 . T A 5434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.3395;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.188;QD=21.65;ReadPosRankSum=2.420;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5434,606,0 chrXV 46774 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=20.13;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3906,441,0 chrXV 46903 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.6465;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=21.30;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3984,459,0 chrXV 47322 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=17.3860;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.12;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4139,462,0 chrXV 47407 . A G 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=202;Dels=0.00;FS=4.089;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.057;QD=21.56;ReadPosRankSum=1.715;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4355,501,0 chrXV 47430 . C T 4276.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.82;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4276,483,0 chrXV 47652 . A C 4761.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.78;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4761,543,0 chrXV 47740 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.01;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2394,264,0 chrXV 47785 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.32;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3415,384,0 chrXV 47884 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0423;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.22;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2771,318,0 chrXV 48217 . G A 5263.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.0905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5263,594,0 chrXV 48311 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.3415;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.93;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3767,429,0 chrXV 48326 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.362;QD=18.28;ReadPosRankSum=1.714;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3436,390,0 chrXV 48344 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.95;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3448,396,0 chrXV 48629 . T G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.231;QD=19.78;ReadPosRankSum=1.674;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2407,270,0 chrXV 48647 . G C 2117 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.90;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,108:112:99:2150,246,0 chrXV 48997 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=19.5202;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.14;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,90:124:99:2282,243,0 chrXV 49028 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=154;Dels=0.00;FS=9.832;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.391;QD=15.86;ReadPosRankSum=2.861;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,149:154:99:2475,294,0 chrXV 50002 . C T 2873 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.41;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2906,312,0 chrXV 50010 . A T 2705 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.40;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2738,300,0 chrXV 50012 . C T 2716 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.35;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2749,300,0 chrXV 50464 . A T 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.905;QD=23.46;ReadPosRankSum=1.706;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3177,345,0 chrXV 52771 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.52;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2258,249,0 chrXV 52863 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.23;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2844,321,0 chrXV 52967 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2132,240,0 chrXV 53357 . G C 2610 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.70;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2643,303,0 chrXV 54061 . G A 4653.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=23.27;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4653,504,0 chrXV 54318 . T C 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=157;Dels=0.00;FS=3.643;HaplotypeScore=6.4744;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.509;QD=14.94;ReadPosRankSum=1.352;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:2378,276,0 chrXV 54321 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=156;Dels=0.00;FS=5.695;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-0.219;QD=14.58;ReadPosRankSum=2.916;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:2308,264,0 chrXV 54339 . T C 2109 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=15.86;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2142,243,0 chrXV 55185 . A G 2215 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=15.49;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2248,258,0 chrXV 55196 . T A 2587 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=16.80;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2620,288,0 chrXV 55233 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=19.68;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2729,312,0 chrXV 55283 . T A 1791 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=16.74;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1824,201,0 chrXV 55291 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=15.67;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1443,162,0 chrXV 55310 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=10.68;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:962,108,0 chrXV 55311 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=10.45;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:911,102,0 chrXV 55328 . C T 1011 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=9.45;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1044,117,0 chrXV 55330 . T C 1007 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=9.41;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1040,120,0 chrXV 55390 . T G 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=-1.599;QD=9.73;ReadPosRankSum=1.710;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:1560,177,0 chrXV 55423 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=9.23;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1418,156,0 chrXV 55428 . A G 1368 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=8.94;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:1401,162,0 chrXV 55437 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=10.35;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1554,177,0 chrXV 55604 . C A 4808.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.2373;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=22.57;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4808,528,0 chrXV 55755 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.75;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3910,459,0 chrXV 55838 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3573;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.52;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4189,453,0 chrXV 55845 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=3.199;HaplotypeScore=4.5121;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.092;QD=19.92;ReadPosRankSum=1.714;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3745,435,0 chrXV 56223 . G T 2282 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.1813;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.16;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2315,255,0 chrXV 56311 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.77;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1383,156,0 chrXV 56332 . A C 1796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=7.091;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.135;QD=20.64;ReadPosRankSum=1.692;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1829,207,0 chrXV 56397 . A T 2984 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.61;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3017,333,0 chrXV 56429 . C A 2962 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.51;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2995,327,0 chrXV 56466 . C T 1856 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.13;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1889,207,0 chrXV 56467 . A G 1707 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=18.55;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1740,198,0 chrXV 56472 . A G 1748 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=18.21;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1781,201,0 chrXV 56753 . A C 2277 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.00;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2310,264,0 chrXV 56980 . G C 3054 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.14;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3087,348,0 chrXV 57161 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.79;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3152,345,0 chrXV 57166 . A C 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.425;QD=18.25;ReadPosRankSum=1.711;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3081,348,0 chrXV 57520 . A G 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=183;Dels=0.00;FS=6.977;HaplotypeScore=17.5539;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.614;QD=21.45;ReadPosRankSum=2.367;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,176:183:99:3926,450,0 chrXV 57629 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.973;QD=22.72;ReadPosRankSum=1.685;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3317,381,0 chrXV 57711 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.67;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3603,396,0 chrXV 57712 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=196;Dels=0.00;FS=6.646;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.190;QD=18.16;ReadPosRankSum=2.374;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:3560,408,0 chrXV 57777 . T C 4460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.912;QD=19.82;ReadPosRankSum=1.686;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4460,504,0 chrXV 58231 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=6.397;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.375;QD=21.82;ReadPosRankSum=2.418;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3361,378,0 chrXV 58445 . T C 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.227;QD=22.76;ReadPosRankSum=1.678;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4393,504,0 chrXV 58941 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3869,432,0 chrXV 59446 . G A 4037.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.07;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4037,453,0 chrXV 59478 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.6869;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.11;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4095,462,0 chrXV 59544 . T C 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.410;QD=22.71;ReadPosRankSum=1.715;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4723,534,0 chrXV 59664 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.3494;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.32;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3918,438,0 chrXV 59868 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2560;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.42;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2475,285,0 chrXV 60074 . T C 105.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.713;DP=68;Dels=0.00;FS=4.346;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.172;QD=1.55;ReadPosRankSum=-0.408;SB=-5.031e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:18:138,18,0 chrXV 60143 . T C 1196 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1229,141,0 chrXV 60240 . C T 369 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=10.25;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:42:402,42,0 chrXV 61084 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.23;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3133,342,0 chrXV 61228 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.20;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2697,309,0 chrXV 61694 . A G 4724.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.7069;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.60;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4724,546,0 chrXV 61748 . C T 4576.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.16;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4576,504,0 chrXV 61766 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=207;Dels=0.00;FS=6.614;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.958;QD=19.25;ReadPosRankSum=2.414;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:2,203:207:99:3984,465,0 chrXV 61901 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3928,450,0 chrXV 62039 . G A 5865.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.3663;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.47;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,256:261:99:5865,645,0 chrXV 62062 . G A 5877.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.52;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5877,639,0 chrXV 62108 . A G 5407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=274;Dels=0.00;FS=7.652;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.935;QD=19.73;ReadPosRankSum=2.368;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:2,270:274:99:5407,618,0 chrXV 62300 . A C 5743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=291;Dels=0.00;FS=5.899;HaplotypeScore=15.9949;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.624;QD=19.74;ReadPosRankSum=2.941;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:3,288:291:99:5743,654,0 chrXV 62744 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4194,453,0 chrXV 62866 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.04;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2899,315,0 chrXV 63524 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4168,450,0 chrXV 63839 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.38;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3048,348,0 chrXV 65427 . T C 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=136;Dels=0.00;FS=5.078;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.680;QD=19.75;ReadPosRankSum=1.706;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2719,306,0 chrXV 65555 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1717;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.84;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2703,303,0 chrXV 65617 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2271,255,0 chrXV 65800 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6290;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.75;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4109,450,0 chrXV 66022 . A T 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=202;Dels=0.00;FS=2.729;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.295;QD=21.40;ReadPosRankSum=2.401;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4323,483,0 chrXV 66457 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2703,300,0 chrXV 66934 . T A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=21.61;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4300,512,0 chrXV 67090 . A T 4281.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.0714;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=20.88;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4281,492,0 chrXV 67130 . C G 2819 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=36.08;MQ0=0;QD=18.55;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2852,324,0 chrXV 67143 . T G 1996 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=17.21;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2029,234,0 chrXV 67145 . G A 2056 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=18.19;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2089,228,0 chrXV 67147 . A G 1971 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=17.44;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2004,225,0 chrXV 67149 . C T 2000 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=17.86;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2033,225,0 chrXV 67175 . C G 1391 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=14.05;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1424,165,0 chrXV 67209 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=15.82;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1362,150,0 chrXV 67210 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=15.85;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1364,150,0 chrXV 67223 . A G 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;MQRankSum=-0.632;QD=15.49;ReadPosRankSum=2.388;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1272,147,0 chrXV 67240 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=16.98;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1459,162,0 chrXV 67262 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=17.71;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1556,177,0 chrXV 67526 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=3.086;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.149;QD=22.28;ReadPosRankSum=1.672;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2618,306,0 chrXV 67774 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.70;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2870,318,0 chrXV 67780 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.59;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2645,309,0 chrXV 67831 . A G 2124 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.80;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2157,246,0 chrXV 68200 . T A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3960,450,0 chrXV 68284 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=173;Dels=0.00;FS=10.138;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.471;QD=21.82;ReadPosRankSum=2.948;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3775,444,0 chrXV 68535 . A G 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.211;QD=22.84;ReadPosRankSum=1.704;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2842,324,0 chrXV 68903 . G T 2125 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.68;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2158,234,0 chrXV 68911 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.52;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2056,222,0 chrXV 68988 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.08;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2153,234,0 chrXV 69357 . A G 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.9635;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.933;QD=23.72;ReadPosRankSum=1.661;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4625,525,0 chrXV 69484 . C G 3887.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3887,453,0 chrXV 69589 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.08;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3621,399,0 chrXV 69757 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=156;Dels=0.00;FS=5.661;HaplotypeScore=13.6406;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=0.344;QD=21.32;ReadPosRankSum=2.851;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3326,384,0 chrXV 69841 . G A 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8166;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.323;QD=19.66;ReadPosRankSum=1.711;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3198,351,0 chrXV 69894 . T C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=3.195;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.505;QD=20.10;ReadPosRankSum=1.636;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2927,339,0 chrXV 69940 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=167;Dels=0.01;FS=8.185;HaplotypeScore=16.7220;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.836;QD=19.13;ReadPosRankSum=2.376;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3227,369,0 chrXV 70068 . T A 145.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=118.7965;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.287;QD=1.04;ReadPosRankSum=1.707;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:24:178,24,0 chrXV 70127 . C A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.35;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3736,417,0 chrXV 70149 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=188;Dels=0.00;FS=2.686;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.594;QD=22.44;ReadPosRankSum=2.423;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4219,477,0 chrXV 70221 . T A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.72;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4104,444,0 chrXV 70272 . C A 4369.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.8763;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.27;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4369,474,0 chrXV 70322 . A G 4946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=225;Dels=0.00;FS=3.050;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.170;QD=21.98;ReadPosRankSum=1.701;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:1,221:225:99:4946,573,0 chrXV 70393 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.20;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4719,519,0 chrXV 70932 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.16;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2001,228,0 chrXV 70941 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.45;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2278,246,0 chrXV 70998 . T C 2174 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=17.53;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2207,249,0 chrXV 71003 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=17.89;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2108,231,0 chrXV 71038 . T C 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=3.464;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.203;QD=17.79;ReadPosRankSum=1.701;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2025,231,0 chrXV 71043 . A T 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.714;QD=18.27;ReadPosRankSum=1.988;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2079,225,0 chrXV 71365 . A T 1977 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2010,222,0 chrXV 72322 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.19;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3233,363,0 chrXV 72737 . T C 2800 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=141;Dels=0.00;FS=3.104;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=0.086;QD=19.86;ReadPosRankSum=1.683;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2833,321,0 chrXV 72741 . A C 2563 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=134;Dels=0.00;FS=6.667;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=-1.433;QD=19.13;ReadPosRankSum=2.376;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2596,297,0 chrXV 72743 . G A 2742 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=20.77;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2775,303,0 chrXV 72842 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2198,243,0 chrXV 73180 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=10.0178;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.39;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3168,342,0 chrXV 73205 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.28;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2707,297,0 chrXV 73326 . A T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.28;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3453,387,0 chrXV 73327 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.634;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.761;QD=20.56;ReadPosRankSum=1.666;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3261,390,0 chrXV 73362 . T C 3082 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.76;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3115,357,0 chrXV 73589 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.86;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3301,381,0 chrXV 74106 . A G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.817;QD=20.37;ReadPosRankSum=1.699;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2192,252,0 chrXV 74126 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.28;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2264,249,0 chrXV 74338 . G T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.56;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4028,450,0 chrXV 74588 . T G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=239;Dels=0.00;FS=11.243;HaplotypeScore=13.5608;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.342;QD=20.62;ReadPosRankSum=2.954;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:3,235:239:99:4928,570,0 chrXV 74693 . G A 4671.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.22;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4671,501,0 chrXV 74698 . G A 4411.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.85;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:4411,480,0 chrXV 74792 . T C 5467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=252;Dels=0.00;FS=3.170;HaplotypeScore=13.7775;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.355;QD=21.69;ReadPosRankSum=1.649;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:1,248:252:99:5467,618,0 chrXV 74821 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=220;Dels=0.00;FS=6.284;HaplotypeScore=8.7896;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.265;QD=19.16;ReadPosRankSum=2.371;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:2,216:220:99:4215,495,0 chrXV 74828 . A C 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DP=223;Dels=0.00;FS=3.232;HaplotypeScore=5.3364;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.306;QD=18.78;ReadPosRankSum=1.230;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4187,477,0 chrXV 74966 . T C 5156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=233;Dels=0.00;FS=9.373;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.444;QD=22.13;ReadPosRankSum=2.884;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:5156,591,0 chrXV 75017 . T G 5175.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.70;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5175,600,0 chrXV 75116 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=3.375;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.107;QD=18.36;ReadPosRankSum=1.699;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:3893,450,0 chrXV 75126 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.47;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:3898,444,0 chrXV 75161 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=180;Dels=0.00;FS=3.419;HaplotypeScore=15.1498;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.525;QD=17.49;ReadPosRankSum=1.674;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3182,360,0 chrXV 75243 . T C 4547.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.1373;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.55;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4547,522,0 chrXV 75353 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.85;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3408,372,0 chrXV 75377 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=164;Dels=0.00;FS=6.084;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.037;QD=19.67;ReadPosRankSum=1.702;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:99:3259,358,0 chrXV 75473 . C A 3105 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.1345;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3138,348,0 chrXV 75517 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=144;Dels=0.00;FS=2.957;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.272;QD=20.08;ReadPosRankSum=2.415;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2925,336,0 chrXV 75605 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.6989;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.74;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3638,408,0 chrXV 75710 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=4.322;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.556;QD=22.99;ReadPosRankSum=1.711;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3840,438,0 chrXV 75779 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.68;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3291,375,0 chrXV 75953 . A G 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=207;Dels=0.00;FS=9.458;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.354;QD=23.43;ReadPosRankSum=2.401;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,202:207:99:4850,552,0 chrXV 76001 . C T 5851.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.1673;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=23.78;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5851,642,0 chrXV 76115 . T A 5651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=239;Dels=0.00;FS=5.993;HaplotypeScore=11.8752;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.408;QD=23.64;ReadPosRankSum=1.416;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:5651,612,0 chrXV 76139 . A G 5755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=262;Dels=0.00;FS=6.173;HaplotypeScore=8.1532;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-1.288;QD=21.97;ReadPosRankSum=2.383;SB=-3.276e+03 GT:AD:DP:GQ:PL 1/1:2,258:262:99:5755,657,0 chrXV 76208 . A C 6009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=22.6883;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.111;QD=21.23;ReadPosRankSum=1.695;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,278:283:99:6009,687,0 chrXV 76250 . G A 6287.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=16.7010;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.45;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6287,702,0 chrXV 76379 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1955;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=15.77;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2762,309,0 chrXV 76391 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=11.78;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:2212,252,0 chrXV 76416 . A G 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.089;DP=177;Dels=0.00;FS=10.448;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=1.463;QD=12.54;ReadPosRankSum=4.138;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:6,171:177:99:2253,258,0 chrXV 76655 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=4.155;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=-1.594;QD=18.68;ReadPosRankSum=1.709;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2854,339,0 chrXV 76693 . A G 1877 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=7.942;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;MQRankSum=-1.914;QD=15.02;ReadPosRankSum=2.410;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:1910,216,0 chrXV 76700 . G A 1584 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=13.77;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1617,186,0 chrXV 76703 . G A 1339 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=14.40;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1372,150,0 chrXV 76704 . G C 1266 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.76;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1299,150,0 chrXV 76707 . A G 1331 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=12.32;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1364,153,0 chrXV 76718 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;QD=12.24;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1489,165,0 chrXV 76742 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=15.26;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1712,201,0 chrXV 76776 . T C 2297 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.53;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2330,264,0 chrXV 77110 . C G 2724 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.9377;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=21.62;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2757,321,0 chrXV 77244 . C A 2455 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.73;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2488,273,0 chrXV 77289 . T C 1949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=106;Dels=0.00;FS=7.055;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=-0.323;QD=18.39;ReadPosRankSum=2.378;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,101:106:99:1982,234,0 chrXV 77307 . C G 1854 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=18.00;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1887,219,0 chrXV 77310 . G C 1617 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=0;QD=16.67;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1650,195,0 chrXV 77319 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=16.12;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1564,171,0 chrXV 77347 . T C 1113 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=166.2394;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=11.72;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1146,129,0 chrXV 77373 . G C 1374 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;QD=12.16;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1407,156,0 chrXV 77379 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=11.76;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1327,153,0 chrXV 77401 . T A 1459 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=12.26;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1492,168,0 chrXV 77404 . G C 1423 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=11.38;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:1456,165,0 chrXV 77521 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=21.78;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3463,393,0 chrXV 77536 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=22.03;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3877,426,0 chrXV 77697 . C T 4295.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.91;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4295,468,0 chrXV 77754 . T C 4495.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=18.2227;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.72;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4495,510,0 chrXV 78105 . G A 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.6175;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.509;QD=20.80;ReadPosRankSum=-1.574;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3216,346,0 chrXV 78123 . G C 3368.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.18;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3368,387,0 chrXV 78272 . T G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.155;QD=23.98;ReadPosRankSum=1.708;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3477,393,0 chrXV 78367 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.11;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2760,312,0 chrXV 78663 . T G 1787 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.02;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1820,210,0 chrXV 78910 . C T 4303.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.04;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4303,489,0 chrXV 79026 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=23.87;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4344,474,0 chrXV 79054 . A G 4391.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=22.40;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4391,507,0 chrXV 79134 . G A 3938.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.30;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:3938,453,0 chrXV 79159 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.58;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4126,444,0 chrXV 79199 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=17.9114;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.40;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4087,453,0 chrXV 79252 . T C 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.727;DP=246;Dels=0.00;FS=4.877;HaplotypeScore=6.2793;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;MQRankSum=-1.937;QD=17.39;ReadPosRankSum=3.822;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:5,241:246:99:4279,492,0 chrXV 79278 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=15.91;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:4058,444,0 chrXV 79286 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=250;Dels=0.00;FS=11.356;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;MQRankSum=-1.556;QD=13.92;ReadPosRankSum=2.430;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,248:250:99:3481,390,0 chrXV 79297 . C G 2678 SnpCluster AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=11.59;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:2711,309,0 chrXV 79304 . A T 2279 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=4.729;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=0;MQRankSum=-1.073;QD=11.12;ReadPosRankSum=1.698;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:2312,264,0 chrXV 79305 . T A 2251 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;MQRankSum=-1.715;QD=10.98;ReadPosRankSum=1.698;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:2284,264,0 chrXV 79585 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=28.1196;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.17;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3093,345,0 chrXV 79627 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6996;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.15;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3381,372,0 chrXV 79764 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=25.57;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3452,375,0 chrXV 79906 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.44;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3344,369,0 chrXV 79930 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.7066;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=18.58;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2857,330,0 chrXV 79941 . T G 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=164;Dels=0.00;FS=5.778;HaplotypeScore=1.9726;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;MQRankSum=-0.528;QD=17.00;ReadPosRankSum=2.957;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:2821,321,0 chrXV 79976 . T C 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.136;DP=194;Dels=0.00;FS=5.244;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;MQRankSum=0.229;QD=11.93;ReadPosRankSum=3.415;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:2348,267,0 chrXV 79987 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=211;Dels=0.00;FS=5.237;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;MQRankSum=-2.815;QD=12.11;ReadPosRankSum=3.386;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:4,207:211:99:2589,297,0 chrXV 80004 . C G 2461 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.55;MQ0=0;QD=12.18;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:2494,279,0 chrXV 80008 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=12.07;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:2471,291,0 chrXV 80033 . A G 2542 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=14.87;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2575,291,0 chrXV 80409 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.37;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1912,201,0 chrXV 80423 . G C 1867 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.08;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1900,216,0 chrXV 80449 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.42;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2116,234,0 chrXV 80641 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.88;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3040,351,0 chrXV 80664 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4028;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.97;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3584,381,0 chrXV 80920 . T C 5953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=3.245;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.849;QD=24.00;ReadPosRankSum=1.718;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5953,678,0 chrXV 81355 . T C 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=0.549;QD=17.90;ReadPosRankSum=1.690;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1501,168,0 chrXV 81364 . G T 1389 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=17.58;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1422,156,0 chrXV 81404 . T C 644 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;QD=9.76;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:78:677,78,0 chrXV 81409 . T G 589 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=9.35;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:72:622,72,0 chrXV 81416 . G A 629 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=10.31;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:72:662,72,0 chrXV 81436 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=15.74;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1198,132,0 chrXV 81481 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.22;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2800,324,0 chrXV 81486 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.57;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3225,351,0 chrXV 81543 . G A 2892 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1957;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=19.15;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2925,324,0 chrXV 81669 . T A 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-1.102;QD=20.21;ReadPosRankSum=1.669;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3335,366,0 chrXV 81676 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.2460;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.68;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3366,390,0 chrXV 81796 . T A 5895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.647;QD=24.06;ReadPosRankSum=1.647;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5895,648,0 chrXV 81934 . T C 6983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=29.3623;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.505;QD=21.55;ReadPosRankSum=1.710;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:1,320:324:99:6983,804,0 chrXV 81988 . T C 7353.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.56;SB=-4.110e+03 GT:AD:DP:GQ:PL 1/1:0,324:326:99:7353,837,0 chrXV 82066 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.583;QD=21.30;ReadPosRankSum=1.717;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:4793,549,0 chrXV 82183 . T C 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=259;Dels=0.00;FS=4.310;HaplotypeScore=18.5950;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.314;QD=19.43;ReadPosRankSum=1.679;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:1,258:259:99:5032,564,0 chrXV 82213 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=207;Dels=0.00;FS=6.342;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-0.243;QD=16.94;ReadPosRankSum=2.390;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:3507,399,0 chrXV 82218 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.63;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:3609,405,0 chrXV 82279 . C T 5174.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.0727;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.00;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5174,559,0 chrXV 82570 . G A 4702.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.1900;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.72;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4702,525,0 chrXV 82603 . T C 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=200;Dels=0.00;FS=2.562;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.558;QD=22.65;ReadPosRankSum=2.955;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4530,513,0 chrXV 82666 . T C 5125.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.2662;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.81;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5125,588,0 chrXV 82988 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.72;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3145,348,0 chrXV 83069 . T C 2022 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.06;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2055,234,0 chrXV 83198 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=3.659;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.797;QD=22.38;ReadPosRankSum=1.707;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3144,354,0 chrXV 83321 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=19.45;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1861,207,0 chrXV 83327 . A C 1857 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=19.76;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1890,219,0 chrXV 83506 . G A 239 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=24.7456;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=2.85;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:30:272,30,0 chrXV 83518 . G A 139.06 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=12.2791;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=2.44;SB=-4.581e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:21:172,21,0 chrXV 83622 . T C 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-1.682;QD=21.59;ReadPosRankSum=1.682;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1523,174,0 chrXV 83646 . T A 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=80;Dels=0.00;FS=3.055;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=-1.402;QD=18.64;ReadPosRankSum=2.388;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1524,171,0 chrXV 83647 . T C 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=83;Dels=0.00;FS=6.086;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-2.281;QD=18.07;ReadPosRankSum=2.916;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1533,177,0 chrXV 83714 . A C 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.304;DP=116;Dels=0.00;FS=7.718;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=0.117;QD=17.68;ReadPosRankSum=1.686;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2084,249,0 chrXV 83718 . A G 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.924;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=0.030;QD=17.15;ReadPosRankSum=0.478;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2039,237,0 chrXV 83725 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=9.2440;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=15.81;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:1899,225,0 chrXV 83757 . A T 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=4.037;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.593;QD=18.51;ReadPosRankSum=1.709;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2847,330,0 chrXV 84190 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=182;Dels=0.00;FS=9.177;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.972;QD=22.21;ReadPosRankSum=2.872;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4042,459,0 chrXV 84226 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.2053;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.24;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3974,441,0 chrXV 84370 . A G 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=209;Dels=0.00;FS=9.673;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.707;QD=22.57;ReadPosRankSum=2.928;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:4717,537,0 chrXV 84388 . C T 4623.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.35;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4623,513,0 chrXV 84463 . C T 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=3.599;HaplotypeScore=8.6663;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.659;QD=20.57;ReadPosRankSum=0.732;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2975,339,0 chrXV 84490 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1410;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.90;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3281,363,0 chrXV 84537 . A G 2705 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=16.80;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2738,312,0 chrXV 84553 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.2672;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.34;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:2975,339,0 chrXV 85000 . C T 5263.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.93;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,235:240:99:5263,579,0 chrXV 85011 . G C 5350.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.57;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5350,612,0 chrXV 85161 . T C 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=105;Dels=0.00;FS=5.936;HaplotypeScore=10.0724;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.053;QD=20.56;ReadPosRankSum=1.630;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,101:105:99:2192,249,0 chrXV 85238 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.24;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1902,213,0 chrXV 85524 . A G 2363 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.61;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2396,267,0 chrXV 85606 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.485;QD=23.06;ReadPosRankSum=1.705;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2939,333,0 chrXV 85645 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=4.924;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.473;QD=22.77;ReadPosRankSum=1.712;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3985,456,0 chrXV 85688 . C T 4713.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.3081;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.68;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4713,513,0 chrXV 85809 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.13;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3571,408,0 chrXV 85960 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.36;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4088,447,0 chrXV 86056 . C A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.12;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3548,408,0 chrXV 86437 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.12;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3605,399,0 chrXV 86619 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.88;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3844,420,0 chrXV 86647 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.55;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3721,438,0 chrXV 86963 . G T 2008 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.36;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,91:94:99:2041,222,0 chrXV 87006 . G C 1220 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=16.27;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1253,144,0 chrXV 87017 . A G 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.448;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;MQRankSum=-0.878;QD=15.05;ReadPosRankSum=1.685;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1132,129,0 chrXV 87033 . C T 1011 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;QD=13.66;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1044,117,0 chrXV 87042 . T C 867 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=12.04;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:900,102,0 chrXV 87062 . G A 854 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=12.20;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:887,99,0 chrXV 87079 . C A 851 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=12.33;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:96:884,96,0 chrXV 87126 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.87;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1305,147,0 chrXV 87158 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.97;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1543,171,0 chrXV 87163 . T A 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=74;Dels=0.00;FS=6.322;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.483;QD=20.97;ReadPosRankSum=2.250;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1585,171,0 chrXV 87202 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.06;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1486,165,0 chrXV 87288 . T G 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-1.321;QD=24.03;ReadPosRankSum=1.674;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1451,165,0 chrXV 87344 . T C 1763 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.51;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1796,207,0 chrXV 87441 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.38;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1317,147,0 chrXV 87841 . G A 2455 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.94;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2488,270,0 chrXV 88299 . G A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.6302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4568,507,0 chrXV 88455 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.74;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3142,348,0 chrXV 88653 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.70;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3014,336,0 chrXV 88659 . G T 3060 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9947;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.82;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3093,339,0 chrXV 89229 . A C 4784.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.80;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4784,537,0 chrXV 89470 . A T 2216 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2249,246,0 chrXV 89616 . C G 2358 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=23.82;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2391,273,0 chrXV 89638 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1171;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.58;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2472,282,0 chrXV 89673 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.34;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2881,327,0 chrXV 89839 . C T 4011.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.80;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4011,435,0 chrXV 89846 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.98;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3956,429,0 chrXV 90174 . A C 2735 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=16.99;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2768,315,0 chrXV 90280 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=119;Dels=0.00;FS=3.022;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.137;QD=20.55;ReadPosRankSum=2.387;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,115:119:99:2478,285,0 chrXV 90400 . A G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.024;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.281;QD=18.64;ReadPosRankSum=2.411;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2400,273,0 chrXV 90448 . A G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=139;Dels=0.00;FS=3.733;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.392;QD=20.69;ReadPosRankSum=1.682;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2909,330,0 chrXV 90505 . T A 4832.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.12;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4832,546,0 chrXV 90802 . A C 6064.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=22.8605;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.73;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,273:279:99:6064,705,0 chrXV 90886 . C T 5272.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.12;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5272,600,0 chrXV 91370 . T C 2300 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.23;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2333,264,0 chrXV 91438 . G T 2112 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=19.92;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2145,237,0 chrXV 91453 . G A 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=100;Dels=0.00;FS=3.098;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.346;QD=16.95;ReadPosRankSum=1.247;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1728,178,0 chrXV 91463 . T A 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.360;QD=17.54;ReadPosRankSum=1.698;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1805,201,0 chrXV 91552 . C G 2374 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.01;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2407,279,0 chrXV 91557 . C G 2290 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.27;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2323,264,0 chrXV 91592 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.59;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1757,204,0 chrXV 91686 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=24.08;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3323,363,0 chrXV 91777 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.8755;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.83;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2384,261,0 chrXV 91823 . A G 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.892;QD=19.37;ReadPosRankSum=1.680;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1331,153,0 chrXV 91845 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.23;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1349,147,0 chrXV 92619 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=16.57;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1607,189,0 chrXV 92649 . A C 913 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=11.86;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:946,108,0 chrXV 92652 . T C 973 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=12.16;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1006,114,0 chrXV 92669 . T C 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;MQRankSum=-1.289;QD=12.94;ReadPosRankSum=1.652;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1146,135,0 chrXV 92690 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=15.91;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1544,174,0 chrXV 92712 . A C 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.808;QD=17.74;ReadPosRankSum=1.706;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2428,276,0 chrXV 93065 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=16.58;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1741,195,0 chrXV 93068 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=15.73;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1748,192,0 chrXV 93082 . T C 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-0.400;QD=15.19;ReadPosRankSum=1.703;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1810,210,0 chrXV 93135 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.94;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2509,276,0 chrXV 93148 . A C 2450 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.99;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2483,294,0 chrXV 93175 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.83;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2345,261,0 chrXV 94140 . A G 3089 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=22.55;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3122,360,0 chrXV 94445 . A T 2711 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.86;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2744,312,0 chrXV 94574 . C A 2243 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.99;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2276,249,0 chrXV 94646 . T A 831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-1.395;QD=11.54;ReadPosRankSum=1.588;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:96:864,96,0 chrXV 94686 . T A 1043 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;QD=12.13;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1076,120,0 chrXV 94688 . A T 1066 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;MQRankSum=-1.613;QD=12.25;ReadPosRankSum=1.692;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1099,123,0 chrXV 94694 . G A 936 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;QD=10.40;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:969,108,0 chrXV 94697 . G A 885 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=10.54;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:918,102,0 chrXV 94761 . T C 1285 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=16.91;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1318,150,0 chrXV 94782 . T C 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-1.472;QD=17.95;ReadPosRankSum=1.689;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1505,171,0 chrXV 94810 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=332.1666;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=17.26;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1500,168,0 chrXV 94972 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.493;QD=22.22;ReadPosRankSum=2.387;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3510,405,0 chrXV 95393 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.56;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4217,480,0 chrXV 95966 . T A 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=117;Dels=0.00;FS=6.133;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.578;QD=23.62;ReadPosRankSum=2.303;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2797,306,0 chrXV 96035 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.47;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3107,348,0 chrXV 96219 . G T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.2229;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.39;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4047,444,0 chrXV 96800 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.18;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3242,354,0 chrXV 96853 . T C 2595 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.9215;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.67;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2628,303,0 chrXV 96983 . T A 2737 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.90;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2770,303,0 chrXV 97189 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=1.001;QD=20.78;ReadPosRankSum=1.705;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2735,318,0 chrXV 97199 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.57;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2686,306,0 chrXV 97478 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6493;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.42;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3834,429,0 chrXV 97910 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2228,261,0 chrXV 98162 . T G 1767 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1800,207,0 chrXV 98443 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.89;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2613,288,0 chrXV 98544 . T A 3131 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.53;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3164,345,0 chrXV 98735 . C T 4382.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.76;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4382,477,0 chrXV 98776 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.54;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3389,378,0 chrXV 98780 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.50;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3231,360,0 chrXV 98981 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5546;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.88;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4072,462,0 chrXV 99650 . C A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.37;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3810,417,0 chrXV 99844 . A G 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;DP=190;Dels=0.00;FS=4.014;HaplotypeScore=15.4583;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.146;QD=22.43;ReadPosRankSum=1.457;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4261,467,0 chrXV 99913 . T C 3981.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.01;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3981,453,0 chrXV 100003 . G A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.5579;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.77;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4441,513,0 chrXV 100171 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.5206;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.66;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3491,378,0 chrXV 100194 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.44;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3332,375,0 chrXV 100228 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.056;QD=21.87;ReadPosRankSum=1.711;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3609,408,0 chrXV 100273 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.0254;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.070;QD=23.25;ReadPosRankSum=1.712;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4046,459,0 chrXV 100319 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0367;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.710;QD=21.54;ReadPosRankSum=1.688;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3381,384,0 chrXV 100603 . A G 5585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=0.228;QD=21.65;ReadPosRankSum=1.719;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:5585,642,0 chrXV 100622 . A G 5094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=240;Dels=0.00;FS=2.969;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.609;QD=21.23;ReadPosRankSum=2.388;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:5094,579,0 chrXV 100717 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=5.310;HaplotypeScore=10.6056;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.589;QD=21.01;ReadPosRankSum=1.697;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4159,474,0 chrXV 100984 . A T 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.347;QD=24.69;ReadPosRankSum=1.697;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2477,273,0 chrXV 101052 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=3.625;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.654;QD=22.36;ReadPosRankSum=1.667;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,105:109:99:2470,288,0 chrXV 101077 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.21;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2720,300,0 chrXV 101318 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.98;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:58:99:1192,135,0 chrXV 101400 . A G 864 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=16.30;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:897,102,0 chrXV 101401 . A T 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=0.294;QD=16.57;ReadPosRankSum=0.686;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:911,99,0 chrXV 101419 . C T 979 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=14.40;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1012,111,0 chrXV 101420 . C T 934 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=13.15;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:967,108,0 chrXV 101577 . C A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.4142;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.87;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4129,444,0 chrXV 101769 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=182;Dels=0.00;FS=2.558;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.650;QD=21.66;ReadPosRankSum=2.961;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3943,444,0 chrXV 101816 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.0581;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.21;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4363,474,0 chrXV 102078 . C A 2792 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.15;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2825,318,0 chrXV 102107 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.63;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2777,315,0 chrXV 102146 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=172;Dels=0.00;FS=3.035;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.510;QD=21.47;ReadPosRankSum=2.392;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3692,420,0 chrXV 102204 . G A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.4201;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.56;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3845,426,0 chrXV 102305 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.97;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3354,375,0 chrXV 102386 . A T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.21;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3272,363,0 chrXV 102500 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=160;Dels=0.00;FS=6.382;HaplotypeScore=11.5223;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.269;QD=20.89;ReadPosRankSum=2.388;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3342,387,0 chrXV 102671 . A T 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.163;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.299;QD=24.56;ReadPosRankSum=1.684;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3561,387,0 chrXV 102760 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4249,477,0 chrXV 102989 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.89;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3891,426,0 chrXV 103238 . T C 3154 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.89;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3187,357,0 chrXV 103244 . T G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=6.388;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.094;QD=20.87;ReadPosRankSum=1.685;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3122,351,0 chrXV 103443 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.21;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2451,291,0 chrXV 103521 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.30;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2002,222,0 chrXV 103524 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.87;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1891,216,0 chrXV 103968 . A C 3791.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.57;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3791,435,0 chrXV 104098 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.17;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4045,459,0 chrXV 104119 . A G 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=198;Dels=0.00;FS=6.545;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.280;QD=20.22;ReadPosRankSum=2.400;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4004,462,0 chrXV 104197 . A T 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.195;QD=23.39;ReadPosRankSum=1.689;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3742,420,0 chrXV 104628 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=158;Dels=0.00;FS=9.051;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-1.134;QD=23.23;ReadPosRankSum=2.386;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,153:158:99:3670,417,0 chrXV 104808 . G C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=21.25;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3507,402,0 chrXV 104814 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=21.68;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3512,393,0 chrXV 104826 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=20.18;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3431,387,0 chrXV 104856 . A G 3663.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.08;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3663,420,0 chrXV 104883 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=17.69;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3396,390,0 chrXV 104892 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.4796;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=17.51;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3396,387,0 chrXV 105006 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=157;Dels=0.00;FS=8.436;HaplotypeScore=6.2104;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.880;QD=22.12;ReadPosRankSum=2.418;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3473,393,0 chrXV 105232 . T G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=3.672;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-0.988;QD=20.00;ReadPosRankSum=1.678;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3840,441,0 chrXV 105242 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0922;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=19.65;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4047,456,0 chrXV 105283 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=16.96;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:3918,447,0 chrXV 105291 . T G 3886.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.27;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:3886,432,0 chrXV 105423 . T A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.9003;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.89;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4006,450,0 chrXV 105555 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=3.486;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=1.562;QD=23.00;ReadPosRankSum=1.713;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4209,486,0 chrXV 105843 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=149;Dels=0.00;FS=9.008;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.229;QD=22.73;ReadPosRankSum=3.400;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3387,381,0 chrXV 106151 . C G 2736 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.42;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2769,315,0 chrXV 106156 . C G 2660 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.14;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2693,303,0 chrXV 106264 . C G 2276 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2309,258,0 chrXV 106364 . T C 779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.042;QD=19.00;ReadPosRankSum=1.648;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:90:812,90,0 chrXV 106384 . T C 845 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.20;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:878,102,0 chrXV 107138 . T C 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=120;Dels=0.00;FS=3.003;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.666;QD=21.76;ReadPosRankSum=2.409;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2644,306,0 chrXV 107387 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=152;Dels=0.00;FS=8.003;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.959;QD=21.91;ReadPosRankSum=2.417;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3330,375,0 chrXV 107546 . C T 5273.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5273,582,0 chrXV 107690 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3945,456,0 chrXV 108214 . A G 2615 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.29;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2648,306,0 chrXV 108220 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.63;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2589,300,0 chrXV 108331 . T G 4274.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.6224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4274,483,0 chrXV 108945 . C T 3153 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.74;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3186,357,0 chrXV 108950 . T A 2930 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=150;Dels=0.00;FS=3.033;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.156;QD=19.53;ReadPosRankSum=2.384;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2963,333,0 chrXV 108954 . C T 2945 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.63;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2978,321,0 chrXV 109088 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=123;Dels=0.00;FS=8.493;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.587;QD=20.76;ReadPosRankSum=3.327;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:4,117:123:99:2586,297,0 chrXV 109106 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.59;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2766,300,0 chrXV 109424 . C T 6061.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.37;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6061,681,0 chrXV 109584 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=266;Dels=0.00;FS=2.683;HaplotypeScore=20.0156;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.970;QD=18.51;ReadPosRankSum=2.376;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:4923,564,0 chrXV 110806 . A G 69.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=8.69;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:102,12,0 chrXV 110892 . G T 733 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:84:766,84,0 chrXV 111208 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.364;QD=22.83;ReadPosRankSum=1.710;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3721,426,0 chrXV 111249 . A T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.0476;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.33;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3350,378,0 chrXV 111554 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4199;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.43;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2883,312,0 chrXV 111761 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=176;Dels=0.00;FS=8.122;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-0.442;QD=20.65;ReadPosRankSum=2.365;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3635,423,0 chrXV 111851 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.71;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3626,396,0 chrXV 111855 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=3.156;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.247;QD=18.42;ReadPosRankSum=1.694;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3353,387,0 chrXV 111925 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.17;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2831,312,0 chrXV 112140 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.29;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2596,291,0 chrXV 112969 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.04;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3255,357,0 chrXV 113046 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=4.337;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.942;QD=22.28;ReadPosRankSum=1.702;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2573,291,0 chrXV 113253 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=15.19;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1947,222,0 chrXV 113321 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=109;Dels=0.00;FS=5.857;HaplotypeScore=5.2284;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=1.907;QD=19.74;ReadPosRankSum=2.860;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2185,249,0 chrXV 113345 . G C 2515 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=21.87;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2548,294,0 chrXV 113370 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=21.74;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2468,282,0 chrXV 113413 . A T 2696 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=23.65;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2729,303,0 chrXV 113519 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.84;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1164,132,0 chrXV 113551 . A T 1301 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-0.734;QD=22.05;ReadPosRankSum=1.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1334,144,0 chrXV 113584 . A G 1194 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.028;DP=59;Dels=0.00;FS=17.709;HaplotypeScore=9.6324;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;MQRankSum=-1.263;QD=20.24;ReadPosRankSum=-0.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1227,138,0 chrXV 113600 . A G 1173 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.404;DP=60;Dels=0.00;FS=17.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.328;QD=19.55;ReadPosRankSum=-1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1206,135,0 chrXV 113601 . G A 1185 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DP=60;Dels=0.00;FS=17.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.866;QD=19.75;ReadPosRankSum=-1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1218,135,0 chrXV 113653 . C T 106.26 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=4.43;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:139,15,0 chrXV 113655 . A G 99.26 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=4.14;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:132,15,0 chrXV 113780 . G T 461 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=17.73;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:57:494,57,0 chrXV 113783 . C T 488 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=18.07;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:57:521,57,0 chrXV 114813 . G A 10050.01 filter AC=2;AF=1.00;AN=2;DP=429;Dels=0.00;FS=0.000;HaplotypeScore=32.7416;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.43;SB=-3.152e+03 GT:AD:DP:GQ:PL 1/1:0,425:429:99:10050,1125,0 chrXV 115059 . A G 556.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.051;DP=690;Dels=0.00;FS=52.285;HaplotypeScore=49.7630;MLEAC=1;MLEAF=0.500;MQ=35.68;MQ0=0;MQRankSum=-9.718;QD=0.81;ReadPosRankSum=-13.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:545,145:690:99:586,0,8689 chrXV 115062 . G A 746.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;DP=693;Dels=0.00;FS=62.480;HaplotypeScore=104.3182;MLEAC=1;MLEAF=0.500;MQ=35.14;MQ0=0;MQRankSum=-8.862;QD=1.08;ReadPosRankSum=-12.931;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:532,161:693:99:776,0,8390 chrXV 115071 . A G 2139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.537;DP=668;Dels=0.00;FS=15.118;HaplotypeScore=103.1106;MLEAC=1;MLEAF=0.500;MQ=33.56;MQ0=0;MQRankSum=-8.633;QD=3.20;ReadPosRankSum=-8.037;SB=-6.990e+02 GT:AD:DP:GQ:PL 0/1:398,270:668:99:2169,0,6007 chrXV 115074 . A G 5788.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.776;DP=667;Dels=0.00;FS=12.965;HaplotypeScore=91.4422;MLEAC=1;MLEAF=0.500;MQ=33.13;MQ0=0;MQRankSum=-4.080;QD=8.68;ReadPosRankSum=6.717;SB=-2.133e+03 GT:AD:DP:GQ:PL 0/1:281,386:667:99:5788,0,2309 chrXV 115083 . A G 2715.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;DP=610;Dels=0.00;FS=2.069;HaplotypeScore=71.4663;MLEAC=1;MLEAF=0.500;MQ=30.83;MQ0=0;MQRankSum=-2.331;QD=4.45;ReadPosRankSum=4.009;SB=-1.325e+03 GT:AD:DP:GQ:PL 0/1:275,332:609:99:2745,0,4272 chrXV 115086 . A G 3989.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;DP=597;Dels=0.00;FS=3.143;HaplotypeScore=52.2992;MLEAC=1;MLEAF=0.500;MQ=30.11;MQ0=0;MQRankSum=-1.482;QD=6.68;ReadPosRankSum=-5.105;SB=-1.149e+03 GT:AD:DP:GQ:PL 0/1:338,259:597:99:3989,0,2877 chrXV 115092 . G A 7973.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;DP=557;Dels=0.00;FS=0.000;HaplotypeScore=92.3257;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;MQRankSum=0.127;QD=14.31;ReadPosRankSum=1.290;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:1,556:557:99:7973,909,0 chrXV 115095 . A G 3318.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.097;DP=553;Dels=0.00;FS=8.209;HaplotypeScore=54.1268;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=0;MQRankSum=0.853;QD=6.00;ReadPosRankSum=12.463;SB=-1.772e+03 GT:AD:DP:GQ:PL 0/1:185,367:553:99:3318,0,2485 chrXV 115098 . A G 2066.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.201;DP=533;Dels=0.00;FS=2.515;HaplotypeScore=18.2841;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=0;MQRankSum=-2.964;QD=3.88;ReadPosRankSum=-11.628;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:377,156:533:99:2096,0,3432 chrXV 115104 . G A 6731.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=487;Dels=0.00;FS=0.000;HaplotypeScore=14.1844;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=1.042;QD=13.82;ReadPosRankSum=1.725;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,486:487:99:6731,749,0 chrXV 115107 . A G 6437.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=483;Dels=0.00;FS=0.000;HaplotypeScore=11.3155;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;MQRankSum=-0.119;QD=13.33;ReadPosRankSum=2.439;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:2,481:483:99:6437,732,0 chrXV 115116 . G A 5749.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=414;Dels=0.00;FS=0.000;HaplotypeScore=8.2353;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=13.89;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,414:414:99:5749,654,0 chrXV 115119 . A G 5441.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=8.1818;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;MQRankSum=-0.068;QD=13.27;ReadPosRankSum=1.724;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,409:410:99:5441,618,0 chrXV 115121 . A G 464.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DP=409;Dels=0.00;FS=17.729;HaplotypeScore=17.4770;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=0;MQRankSum=1.352;QD=1.13;ReadPosRankSum=12.539;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:309,100:409:99:494,0,3835 chrXV 115128 . G A 4833.01 SnpCluster AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=66.1071;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;QD=14.73;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,328:328:99:4833,552,0 chrXV 115131 . A G 4076.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.074;DP=314;Dels=0.00;FS=6.309;HaplotypeScore=68.0234;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;MQRankSum=0.314;QD=12.98;ReadPosRankSum=5.347;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:18,296:314:99:4076,474,0 chrXV 115133 . A G 1222.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.968;DP=301;Dels=0.00;FS=18.810;HaplotypeScore=35.6790;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=0;MQRankSum=0.396;QD=4.06;ReadPosRankSum=11.929;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:170,131:301:99:1252,0,1438 chrXV 115149 . A G 410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=49;Dels=0.00;FS=23.539;HaplotypeScore=9.8544;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.236;QD=8.37;ReadPosRankSum=0.955;SB=-1.401e+01 GT:AD:DP:GQ:PL 1/1:10,39:49:51:443,51,0 chrXV 115176 . G A 461 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.17;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:494,57,0 chrXV 115179 . A G 459 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.43;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:57:492,57,0 chrXV 115188 . G A 523 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.69;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:63:556,63,0 chrXV 115191 . A G 610 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.72;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:75:643,75,0 chrXV 115200 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7152;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.34;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1212,135,0 chrXV 115203 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7152;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.00;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1193,135,0 chrXV 115229 . A G 1258 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=7.96;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1291,147,0 chrXV 115236 . T A 1451 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=8.49;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:1484,168,0 chrXV 115239 . T A 1548 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=14.078;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;MQRankSum=-2.409;QD=8.60;ReadPosRankSum=2.368;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:2,178:180:99:1581,180,0 chrXV 115242 . A G 1588 SnpCluster AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;QD=8.49;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,185:187:99:1621,186,0 chrXV 115244 . T A 1780 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=9.42;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,188:189:99:1813,207,0 chrXV 115294 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.8473;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=15.07;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2987,336,0 chrXV 115336 . G T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.9048;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=21.84;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4478,501,0 chrXV 115446 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.1344;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.565;QD=22.56;ReadPosRankSum=2.404;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3677,414,0 chrXV 115862 . A G 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.035;QD=23.26;ReadPosRankSum=1.626;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2312,264,0 chrXV 116289 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1667,186,0 chrXV 116567 . A G 2277 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.8850;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.28;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2310,267,0 chrXV 116712 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.5472;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.18;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3070,336,0 chrXV 116735 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3361;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.83;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2631,291,0 chrXV 116926 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.23;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3053,345,0 chrXV 116967 . T A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.95;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3664,405,0 chrXV 117014 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=151;Dels=0.00;FS=5.901;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.180;QD=23.82;ReadPosRankSum=2.954;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3597,405,0 chrXV 117048 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.81;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3512,387,0 chrXV 117122 . T A 2785 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.76;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2818,324,0 chrXV 117367 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.094;QD=23.71;ReadPosRankSum=1.669;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3912,453,0 chrXV 117525 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1697;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=0.267;QD=20.15;ReadPosRankSum=1.709;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3076,357,0 chrXV 117678 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;QD=22.85;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1884,207,0 chrXV 117689 . C A 1296 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=20.25;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1329,147,0 chrXV 117698 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=1;QD=20.41;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1176,126,0 chrXV 117998 . C T 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.132;DP=621;Dels=0.00;FS=0.000;HaplotypeScore=117.3481;MLEAC=1;MLEAF=0.500;MQ=12.70;MQ0=52;MQRankSum=0.240;QD=0.20;ReadPosRankSum=-1.445;SB=-2.089e+01 GT:AD:DP:GQ:PL 0/1:377,243:621:25:153,0,25 chrXV 118030 . C T 752.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.835;DP=990;Dels=0.00;FS=36.895;HaplotypeScore=21.8646;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=42;MQRankSum=-5.163;QD=0.76;ReadPosRankSum=3.401;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:656,334:990:99:782,0,3823 chrXV 118032 . A C 5857.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.953;DP=988;Dels=0.00;FS=0.000;HaplotypeScore=12.4551;MLEAC=2;MLEAF=1.00;MQ=19.65;MQ0=41;MQRankSum=-1.070;QD=5.93;ReadPosRankSum=1.450;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,985:988:99:5857,667,0 chrXV 123885 . T C 2872 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.89;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2905,333,0 chrXV 124780 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.3553;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.88;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3959,438,0 chrXV 124867 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.3374;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.912;QD=21.24;ReadPosRankSum=-0.342;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,151:156:99:3314,352,0 chrXV 125209 . A T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.65;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3307,360,0 chrXV 125231 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.72;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2954,339,0 chrXV 125570 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=196;Dels=0.00;FS=4.305;HaplotypeScore=21.3150;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.750;QD=19.74;ReadPosRankSum=1.696;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3869,435,0 chrXV 125806 . T C 1648 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.68;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1681,195,0 chrXV 125835 . C A 1876 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.16;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1909,210,0 chrXV 126267 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.44;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4196,456,0 chrXV 126375 . A G 4135.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.1035;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.11;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4135,477,0 chrXV 126617 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=203;Dels=0.00;FS=5.546;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.935;QD=21.93;ReadPosRankSum=2.926;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4452,504,0 chrXV 126866 . C G 2296 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.1006;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.13;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2329,264,0 chrXV 127096 . A G 2589 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.75;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2622,297,0 chrXV 127121 . T A 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5116;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.510;QD=22.10;ReadPosRankSum=1.700;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2442,282,0 chrXV 127240 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3143,342,0 chrXV 127669 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2146,246,0 chrXV 128123 . G C 2007 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.18;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2040,228,0 chrXV 128405 . G A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=20.88;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3249,354,0 chrXV 128416 . T G 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=2.732;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.322;QD=18.46;ReadPosRankSum=2.390;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3061,360,0 chrXV 128417 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.12;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3300,363,0 chrXV 128530 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.92;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3682,408,0 chrXV 128581 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.95;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3947,432,0 chrXV 128721 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.15;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3389,384,0 chrXV 128730 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.60;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3606,408,0 chrXV 129347 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3528,393,0 chrXV 129671 . A G 3001 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=21.28;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3034,342,0 chrXV 130049 . A G 3011 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.52;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3044,342,0 chrXV 130079 . A C 3348.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.93;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3348,384,0 chrXV 130190 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=148;Dels=0.00;FS=8.530;HaplotypeScore=9.3233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.557;QD=23.52;ReadPosRankSum=2.382;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3481,396,0 chrXV 130295 . A C 3480.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.22;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3480,402,0 chrXV 130732 . G C 2783 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.41;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2816,330,0 chrXV 130793 . T C 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=183;Dels=0.00;FS=6.241;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.648;QD=23.40;ReadPosRankSum=2.409;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,178:183:99:4283,477,0 chrXV 131279 . A G 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=226;Dels=0.00;FS=2.952;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-2.176;QD=20.88;ReadPosRankSum=2.417;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:4718,537,0 chrXV 131296 . C T 4905.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=8.2196;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.78;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4905,540,0 chrXV 131327 . C T 5348.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.65;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5348,588,0 chrXV 131471 . T G 4493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=204;Dels=0.00;FS=6.391;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-2.016;QD=22.02;ReadPosRankSum=2.425;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4493,510,0 chrXV 131567 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.19;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3572,396,0 chrXV 131694 . A G 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.713;QD=20.18;ReadPosRankSum=1.707;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2778,321,0 chrXV 131703 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.86;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2595,285,0 chrXV 131796 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=3.037;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.187;QD=21.15;ReadPosRankSum=2.399;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3142,351,0 chrXV 131858 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.4810;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.26;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3265,357,0 chrXV 132086 . T A 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.472;QD=19.92;ReadPosRankSum=1.703;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2424,276,0 chrXV 132089 . T C 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=3.046;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.169;QD=18.16;ReadPosRankSum=1.704;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2267,261,0 chrXV 132152 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=132;Dels=0.00;FS=4.082;HaplotypeScore=6.6361;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.217;QD=19.04;ReadPosRankSum=1.705;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,127:132:99:2546,288,0 chrXV 132179 . A T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.99;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3334,366,0 chrXV 132221 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.64;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3022,339,0 chrXV 132501 . G A 913 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.43;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:946,108,0 chrXV 132587 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=14.53;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1166,141,0 chrXV 132600 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8942;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=15.72;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1369,156,0 chrXV 132713 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.1389;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.89;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3095,336,0 chrXV 133509 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3049,336,0 chrXV 134063 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.74;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2785,312,0 chrXV 135587 . A G 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=197;Dels=0.00;FS=2.983;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.280;QD=22.42;ReadPosRankSum=2.400;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4417,504,0 chrXV 135770 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3778,411,0 chrXV 136228 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.82;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2543,291,0 chrXV 136572 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.80;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3285,372,0 chrXV 137220 . T C 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=194;Dels=0.00;FS=18.285;HaplotypeScore=13.1498;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.878;QD=21.57;ReadPosRankSum=3.342;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:4,188:194:99:4184,474,0 chrXV 137304 . G T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.1800;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.58;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4031,435,0 chrXV 137661 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.746;QD=19.76;ReadPosRankSum=1.709;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3037,351,0 chrXV 137841 . A G 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.3066;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.857;QD=16.70;ReadPosRankSum=1.694;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1553,180,0 chrXV 137942 . G T 1517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.2440;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;MQRankSum=-0.495;QD=21.37;ReadPosRankSum=1.534;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1550,177,0 chrXV 138302 . G A 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.373;QD=23.04;ReadPosRankSum=-0.879;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3051,339,0 chrXV 138347 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.37;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3485,381,0 chrXV 138539 . G A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.06;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4283,465,0 chrXV 138586 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.16;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3390,372,0 chrXV 138847 . T C 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.742;QD=22.07;ReadPosRankSum=1.706;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3012,348,0 chrXV 139359 . T G 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.290;QD=24.00;ReadPosRankSum=1.708;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3384,378,0 chrXV 139494 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3953,450,0 chrXV 139719 . T C 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=109;Dels=0.00;FS=3.573;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.372;QD=21.06;ReadPosRankSum=1.700;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2328,273,0 chrXV 140030 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4334,471,0 chrXV 140746 . C T 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=127;Dels=0.00;FS=3.153;HaplotypeScore=6.5799;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.006;QD=21.03;ReadPosRankSum=-0.615;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2704,279,0 chrXV 140760 . A G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=3.049;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.640;QD=21.52;ReadPosRankSum=1.671;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2465,282,0 chrXV 140890 . T C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.1069;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.136;QD=20.65;ReadPosRankSum=1.709;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3172,357,0 chrXV 141126 . A G 3033 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.80;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3066,345,0 chrXV 141147 . T A 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=122;Dels=0.00;FS=9.259;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.132;QD=21.52;ReadPosRankSum=2.348;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2659,300,0 chrXV 141631 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.30;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2386,258,0 chrXV 143222 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.77;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3689,408,0 chrXV 143372 . A G 5341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=233;Dels=0.00;FS=4.361;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.806;QD=22.92;ReadPosRankSum=1.702;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:5341,618,0 chrXV 143597 . C T 5010.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.98;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5010,546,0 chrXV 143792 . T C 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.8411;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;MQRankSum=-0.334;QD=22.28;ReadPosRankSum=0.498;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4033,471,0 chrXV 143811 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=22.84;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4019,447,0 chrXV 143890 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=136;Dels=0.00;FS=6.592;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.147;QD=20.04;ReadPosRankSum=2.395;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2759,318,0 chrXV 143977 . T C 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=4.270;HaplotypeScore=9.9312;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;MQRankSum=1.308;QD=18.71;ReadPosRankSum=1.709;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2821,318,0 chrXV 143987 . C T 2151 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.03;FS=0.000;HaplotypeScore=7.2102;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;QD=15.47;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2184,249,0 chrXV 143989 . T C 2090 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.454;DP=137;Dels=0.00;FS=5.875;HaplotypeScore=4.6004;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;MQRankSum=-0.867;QD=15.26;ReadPosRankSum=4.264;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:8,129:137:99:2123,246,0 chrXV 143990 . A T 2136 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6004;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=15.48;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:2169,246,0 chrXV 144008 . A G 2114 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=17.19;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2147,249,0 chrXV 144050 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.04;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2089,228,0 chrXV 144117 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.6654;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.27;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3340,366,0 chrXV 144479 . A C 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=192;Dels=0.00;FS=8.437;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.953;QD=23.08;ReadPosRankSum=2.424;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4431,504,0 chrXV 144655 . C T 4724.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.8439;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.39;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4724,516,0 chrXV 144992 . T C 1834 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9060;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.10;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,92:96:99:1867,225,0 chrXV 145028 . T C 1184 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.10;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1217,147,0 chrXV 145331 . A G 893 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.30;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:926,111,0 chrXV 145354 . A G 1137 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.06;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1170,141,0 chrXV 145519 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.416;QD=22.21;ReadPosRankSum=1.628;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2254,258,0 chrXV 145551 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.53;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2829,306,0 chrXV 145665 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2854,312,0 chrXV 145798 . A T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.9633;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.00;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3956,432,0 chrXV 146225 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.77;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2384,255,0 chrXV 146231 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.959;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.146;QD=21.76;ReadPosRankSum=1.603;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2361,270,0 chrXV 146419 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.27;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2156,234,0 chrXV 147007 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.95;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2030,222,0 chrXV 147540 . G T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.35;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4504,498,0 chrXV 147582 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.41;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4297,465,0 chrXV 147891 . A C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.62;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3823,438,0 chrXV 147981 . G A 4400.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.56;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4400,498,0 chrXV 148128 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.37;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3238,366,0 chrXV 148131 . A G 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=2.889;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-1.204;QD=20.99;ReadPosRankSum=2.400;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3203,372,0 chrXV 148159 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=169;Dels=0.00;FS=7.692;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.865;QD=20.70;ReadPosRankSum=2.391;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3499,396,0 chrXV 148210 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.02;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3952,432,0 chrXV 148225 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.12;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3823,423,0 chrXV 148695 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=22.79;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2700,303,0 chrXV 148719 . C G 2591 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=20.56;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2624,300,0 chrXV 148731 . C T 2502 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=18.95;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2535,279,0 chrXV 148734 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=18.93;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2570,282,0 chrXV 148894 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.75;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3633,420,0 chrXV 148914 . T C 2914 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=18.10;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2947,345,0 chrXV 148926 . T A 2422 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=16.48;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2455,285,0 chrXV 148966 . C T 2737 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.88;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2770,306,0 chrXV 149046 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.27;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3446,372,0 chrXV 149214 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.66;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4093,462,0 chrXV 149247 . G C 4597.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.9966;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.82;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4597,525,0 chrXV 149394 . T C 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=215;Dels=0.00;FS=3.372;HaplotypeScore=8.0666;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.439;QD=22.87;ReadPosRankSum=1.651;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4918,561,0 chrXV 149706 . A T 4609.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.64;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4609,507,0 chrXV 150111 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.94;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3169,357,0 chrXV 150501 . C G 2135 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.99;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2168,246,0 chrXV 150543 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.53;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2216,243,0 chrXV 150589 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.37;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2580,294,0 chrXV 150653 . T C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=3.043;HaplotypeScore=8.2544;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.602;QD=22.84;ReadPosRankSum=1.706;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3093,357,0 chrXV 150756 . T A 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7254;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.027;QD=23.40;ReadPosRankSum=1.678;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3051,342,0 chrXV 150962 . A G 4751.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.18;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4751,537,0 chrXV 151016 . G A 4889.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4889,534,0 chrXV 151061 . C G 4589.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.5982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4589,522,0 chrXV 151148 . C A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.02;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4535,516,0 chrXV 151183 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=7.026;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.158;QD=23.74;ReadPosRankSum=2.395;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4250,486,0 chrXV 151234 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.36;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3623,417,0 chrXV 151304 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3293,357,0 chrXV 151369 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.614;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.540;QD=21.75;ReadPosRankSum=1.665;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3393,384,0 chrXV 151396 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.41;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3103,336,0 chrXV 151522 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.56;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3299,366,0 chrXV 151910 . T A 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.357;QD=22.60;ReadPosRankSum=1.656;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3107,354,0 chrXV 152407 . T G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=4.480;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.943;QD=22.98;ReadPosRankSum=1.698;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2354,267,0 chrXV 153180 . T G 6122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=273;Dels=0.00;FS=2.899;HaplotypeScore=14.3198;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.499;QD=22.42;ReadPosRankSum=2.414;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:6122,699,0 chrXV 153242 . C T 4781.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=9.9982;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.05;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:4781,531,0 chrXV 153262 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=219;Dels=0.00;FS=8.756;HaplotypeScore=7.4998;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.382;QD=17.51;ReadPosRankSum=3.380;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:4,213:219:99:3835,438,0 chrXV 153279 . A T 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=223;Dels=0.00;FS=3.271;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.381;QD=17.30;ReadPosRankSum=1.701;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:3859,429,0 chrXV 153317 . T C 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=229;Dels=0.00;FS=3.367;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.243;QD=17.65;ReadPosRankSum=1.671;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4042,465,0 chrXV 153362 . G A 5391.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.7758;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.94;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5391,588,0 chrXV 153405 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;DP=207;Dels=0.00;FS=5.678;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.481;QD=20.58;ReadPosRankSum=-0.477;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4260,452,0 chrXV 153546 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7757;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.19;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3117,345,0 chrXV 153615 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=2.995;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.899;QD=23.59;ReadPosRankSum=2.413;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:3241,363,0 chrXV 153774 . C A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.88;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3654,408,0 chrXV 154056 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=151;Dels=0.00;FS=3.442;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.936;QD=20.62;ReadPosRankSum=1.662;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3147,354,0 chrXV 154073 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.56;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3407,369,0 chrXV 154165 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.265;QD=22.10;ReadPosRankSum=1.658;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3171,363,0 chrXV 154173 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.19;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3328,366,0 chrXV 154995 . A T 524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.733;QD=19.41;ReadPosRankSum=1.605;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:66:557,66,0 chrXV 155250 . A G 1128 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1161,141,0 chrXV 156059 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=175;Dels=0.00;FS=3.032;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.327;QD=20.91;ReadPosRankSum=2.365;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3660,429,0 chrXV 157101 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.55;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2016,222,0 chrXV 158356 . G A 4841.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.7478;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.52;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4841,531,0 chrXV 158961 . G T 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=146;Dels=0.00;FS=6.640;HaplotypeScore=14.0385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.981;QD=18.66;ReadPosRankSum=1.151;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,142:146:99:2757,294,0 chrXV 159066 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.93;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1756,192,0 chrXV 159092 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.74;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1795,204,0 chrXV 159369 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.45;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3614,399,0 chrXV 159827 . A G 7509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=351;Dels=0.00;FS=9.107;HaplotypeScore=16.4039;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.355;QD=21.39;ReadPosRankSum=2.934;SB=-4.231e+03 GT:AD:DP:GQ:PL 1/1:3,344:351:99:7509,870,0 chrXV 160139 . G A 3309.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=222;Dels=0.00;FS=2.790;HaplotypeScore=13.9381;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=0.138;QD=14.91;ReadPosRankSum=0.271;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:3309,385,0 chrXV 160141 . T C 2756 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.519;DP=211;Dels=0.00;FS=1.685;HaplotypeScore=7.9982;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;MQRankSum=-0.760;QD=13.06;ReadPosRankSum=3.112;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:7,202:211:99:2789,325,0 chrXV 160142 . G T 2704 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.745;DP=209;Dels=0.00;FS=1.741;HaplotypeScore=15.2285;MLEAC=2;MLEAF=1.00;MQ=25.34;MQ0=0;MQRankSum=-0.218;QD=12.94;ReadPosRankSum=3.780;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:7,201:208:99:2737,319,0 chrXV 160153 . G C 2545 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=239;Dels=0.00;FS=5.515;HaplotypeScore=3.6277;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=4;MQRankSum=0.626;QD=10.65;ReadPosRankSum=0.553;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:2578,304,0 chrXV 160154 . G A 2563 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.735;DP=241;Dels=0.00;FS=3.241;HaplotypeScore=4.5609;MLEAC=2;MLEAF=1.00;MQ=23.06;MQ0=4;MQRankSum=-0.264;QD=10.63;ReadPosRankSum=-0.834;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:2596,284,0 chrXV 160163 . G A 2776 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=275;Dels=0.00;FS=5.328;HaplotypeScore=14.2522;MLEAC=2;MLEAF=1.00;MQ=23.58;MQ0=7;MQRankSum=-0.013;QD=10.09;ReadPosRankSum=1.433;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:2809,328,0 chrXV 160967 . G C 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=71.1521;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=1.352;QD=15.30;ReadPosRankSum=2.883;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:5,162:169:99:2619,315,0 chrXV 160982 . G A 528 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.02;FS=0.000;HaplotypeScore=101.1379;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=2.78;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:63:561,63,0 chrXV 161164 . T A 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-0.167;QD=19.75;ReadPosRankSum=1.690;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3279,375,0 chrXV 161174 . T A 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.6933;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=0.499;QD=19.80;ReadPosRankSum=0.470;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3366,378,0 chrXV 161180 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.9726;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=19.02;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3328,372,0 chrXV 161205 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=20.01;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3962,435,0 chrXV 161284 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.4766;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.860;QD=21.21;ReadPosRankSum=2.346;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4030,468,0 chrXV 161330 . T C 3191 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.27;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3224,369,0 chrXV 161509 . T C 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.2421;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.475;QD=23.88;ReadPosRankSum=1.681;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4896,564,0 chrXV 161586 . T C 5411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=234;Dels=0.00;FS=2.927;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.540;QD=23.12;ReadPosRankSum=2.345;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5411,606,0 chrXV 161835 . G T 4598.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.1609;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=21.29;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4598,519,0 chrXV 161986 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0154;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=20.33;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3720,435,0 chrXV 162027 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2100;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=15.76;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2286,261,0 chrXV 162035 . A T 1902 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;QD=13.99;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1935,225,0 chrXV 162038 . T C 1888 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=2.642;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=-0.575;QD=13.58;ReadPosRankSum=2.397;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:2,137:139:99:1921,239,0 chrXV 162043 . T C 1763 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=135;Dels=0.00;FS=20.727;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;MQRankSum=-2.939;QD=13.06;ReadPosRankSum=3.367;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:4,131:135:99:1796,213,0 chrXV 162056 . C T 1799 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=13.84;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1832,204,0 chrXV 162065 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=14.38;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1902,216,0 chrXV 162143 . T A 1560 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=15.76;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1593,180,0 chrXV 162148 . A T 1373 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;QD=14.45;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1406,165,0 chrXV 162158 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9664;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=12.89;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1322,156,0 chrXV 162166 . A G 1038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=98;Dels=0.00;FS=4.158;HaplotypeScore=82.2201;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;MQRankSum=1.485;QD=10.59;ReadPosRankSum=2.890;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:5,93:98:99:1071,115,0 chrXV 162190 . G A 1483 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=0;QD=13.24;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1516,183,0 chrXV 162223 . A G 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.613;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;MQRankSum=0.257;QD=11.67;ReadPosRankSum=1.700;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1293,161,0 chrXV 162230 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=12.33;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1328,162,0 chrXV 162240 . C A 1456 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;QD=12.66;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1489,177,0 chrXV 162280 . C T 1944 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=16.20;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,117:120:99:1977,231,0 chrXV 162285 . A T 1895 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;DP=126;Dels=0.00;FS=6.075;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;MQRankSum=1.152;QD=15.04;ReadPosRankSum=2.736;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:3,123:126:99:1928,222,0 chrXV 162286 . T C 1885 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.7386;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;MQRankSum=-1.387;QD=15.08;ReadPosRankSum=2.017;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:1918,225,0 chrXV 162324 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.4400;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=19.94;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2885,330,0 chrXV 162386 . A G 2853 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=16.68;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2886,333,0 chrXV 162389 . T A 2845 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=16.74;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2878,339,0 chrXV 162419 . G C 2630 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=19.1629;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=14.69;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:2663,306,0 chrXV 162494 . A G 3069 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.50;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3102,366,0 chrXV 162872 . A C 7795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=356;Dels=0.00;FS=3.370;HaplotypeScore=18.3555;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.338;QD=21.90;ReadPosRankSum=1.673;SB=-4.191e+03 GT:AD:DP:GQ:PL 1/1:1,351:356:99:7795,882,0 chrXV 163253 . T C 4973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=224;Dels=0.00;FS=11.059;HaplotypeScore=22.3367;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.500;QD=22.20;ReadPosRankSum=2.942;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:4973,567,0 chrXV 163486 . A G 5113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=231;Dels=0.00;FS=3.712;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.729;QD=22.13;ReadPosRankSum=1.671;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:5113,597,0 chrXV 163567 . G A 6936.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=21.4307;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.89;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,301:303:99:6936,792,0 chrXV 163600 . C T 7207.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=23.0884;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.63;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,303:305:99:7207,804,0 chrXV 163681 . T C 7573.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=375;Dels=0.00;FS=2.551;HaplotypeScore=8.8425;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.519;QD=20.19;ReadPosRankSum=2.911;SB=-3.386e+03 GT:AD:DP:GQ:PL 1/1:3,370:375:99:7573,870,0 chrXV 163690 . C T 7391.01 filter AC=2;AF=1.00;AN=2;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=3.4107;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.76;SB=-3.836e+03 GT:AD:DP:GQ:PL 1/1:0,373:373:99:7391,837,0 chrXV 163702 . T C 7212.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=7.4146;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.207;QD=19.13;ReadPosRankSum=1.668;SB=-3.988e+03 GT:AD:DP:GQ:PL 1/1:1,375:377:99:7212,810,0 chrXV 163776 . C G 7383.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=15.4479;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.10;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:0,329:334:99:7383,840,0 chrXV 163799 . G A 7976.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=6.7201;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.72;SB=-3.622e+03 GT:AD:DP:GQ:PL 1/1:0,350:351:99:7976,882,0 chrXV 163912 . A T 5110.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.21;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:5110,579,0 chrXV 163943 . A C 5827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.093;QD=21.34;ReadPosRankSum=1.719;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,270:273:99:5827,657,0 chrXV 164269 . T A 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=170;Dels=0.00;FS=3.220;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-1.325;QD=18.51;ReadPosRankSum=1.712;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3180,360,0 chrXV 164284 . T A 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=3.188;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.376;QD=19.75;ReadPosRankSum=1.653;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3476,393,0 chrXV 164383 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.3505;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.33;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4480,492,0 chrXV 164556 . A G 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=227;Dels=0.00;FS=11.098;HaplotypeScore=19.8772;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.693;QD=21.60;ReadPosRankSum=2.925;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:4903,561,0 chrXV 164632 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.6926;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=21.92;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4844,525,0 chrXV 164641 . C T 4608.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=21.53;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4608,513,0 chrXV 164683 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=19.79;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4254,465,0 chrXV 164705 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.2176;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=16.91;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:3974,435,0 chrXV 164708 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.768;DP=237;Dels=0.00;FS=7.968;HaplotypeScore=3.2176;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=-1.862;QD=16.08;ReadPosRankSum=3.781;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:5,232:237:99:3811,429,0 chrXV 164737 . T A 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=226;Dels=0.00;FS=3.049;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.245;QD=17.65;ReadPosRankSum=1.686;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:3989,441,0 chrXV 164802 . C T 5320.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.83;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5320,600,0 chrXV 164835 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.15;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4166,456,0 chrXV 164836 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.07;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4130,459,0 chrXV 164935 . T C 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=201;Dels=0.00;FS=3.442;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.215;QD=21.79;ReadPosRankSum=1.698;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4380,510,0 chrXV 165574 . C T 1208 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.79;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1241,138,0 chrXV 165594 . G A 834 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=13.67;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:93:867,93,0 chrXV 165599 . C G 747 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=12.25;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:90:780,90,0 chrXV 165622 . G A 935 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=12.99;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:968,111,0 chrXV 166007 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=3.129;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.023;QD=20.05;ReadPosRankSum=1.709;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3001,345,0 chrXV 166009 . A C 2985 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.45;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3018,342,0 chrXV 166048 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.108;DP=146;Dels=0.00;FS=3.033;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.128;QD=18.48;ReadPosRankSum=2.347;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:2731,309,0 chrXV 166088 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.92;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2682,303,0 chrXV 166163 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.79;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3693,402,0 chrXV 166324 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6545;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=22.88;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2710,297,0 chrXV 166559 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.222;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.137;QD=20.32;ReadPosRankSum=1.677;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2593,297,0 chrXV 166700 . A T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.8818;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4157,471,0 chrXV 166792 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.67;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3016,333,0 chrXV 166848 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.11;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3153,345,0 chrXV 167021 . A T 2333 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.6611;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.02;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2366,261,0 chrXV 167044 . T A 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=12.1797;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.489;QD=17.98;ReadPosRankSum=1.702;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2137,234,0 chrXV 167078 . A T 2465 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.8282;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.41;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2498,282,0 chrXV 167344 . T A 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=195;Dels=0.00;FS=3.030;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.775;QD=23.19;ReadPosRankSum=2.361;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4523,510,0 chrXV 167546 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.56;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3143,342,0 chrXV 167627 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3400;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=18.89;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2866,321,0 chrXV 167650 . T C 2252 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=19.58;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2285,258,0 chrXV 167656 . A G 1909 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;MQRankSum=-2.333;QD=18.18;ReadPosRankSum=2.403;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1942,225,0 chrXV 167658 . T C 1877 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=18.22;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1910,228,0 chrXV 167659 . A G 1977 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=19.19;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2010,228,0 chrXV 167686 . G A 1163 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=15.72;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1196,129,0 chrXV 167688 . A T 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=2.733;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;MQRankSum=-0.477;QD=15.83;ReadPosRankSum=2.384;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1220,132,0 chrXV 167717 . A C 881 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.21;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:914,102,0 chrXV 167735 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=15.71;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1101,126,0 chrXV 167794 . A G 1868 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.24;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1901,216,0 chrXV 167815 . C G 2190 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.35;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2223,258,0 chrXV 167840 . G C 2067 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.76;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2100,243,0 chrXV 167922 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.88;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2243,243,0 chrXV 167933 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.85;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2327,258,0 chrXV 168268 . C G 3420.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.38;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,155:160:99:3420,387,0 chrXV 168295 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=166;Dels=0.00;FS=12.675;HaplotypeScore=12.4979;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.177;QD=21.96;ReadPosRankSum=2.677;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:3,162:166:99:3645,414,0 chrXV 168347 . C G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.21;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:3478,405,0 chrXV 168349 . A C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.797;QD=18.51;ReadPosRankSum=0.027;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:3553,405,0 chrXV 168404 . A C 3022 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.78;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3055,348,0 chrXV 168744 . T C 4961.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.1049;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.07;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4961,573,0 chrXV 168885 . C T 4609.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.16;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4609,510,0 chrXV 169317 . C T 4715.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.14;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,208:213:99:4715,528,0 chrXV 169333 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.9560;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.093;QD=21.20;ReadPosRankSum=1.698;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4388,495,0 chrXV 169416 . G A 5282.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.34;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5282,570,0 chrXV 169599 . G A 4792.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=23.2278;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.88;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4792,540,0 chrXV 169772 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.86;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3848,435,0 chrXV 169851 . A C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.290;QD=20.22;ReadPosRankSum=2.357;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2176,246,0 chrXV 170112 . A G 2980 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=25.25;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3013,345,0 chrXV 170199 . A G 2348 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=19.40;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2381,282,0 chrXV 170203 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.85;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2395,267,0 chrXV 170583 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=193;Dels=0.00;FS=4.002;HaplotypeScore=11.2953;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.009;QD=19.34;ReadPosRankSum=1.678;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:3732,426,0 chrXV 170671 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=176;Dels=0.00;FS=8.300;HaplotypeScore=9.7032;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.808;QD=19.72;ReadPosRankSum=1.598;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3471,388,0 chrXV 170921 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4147,471,0 chrXV 171213 . G A 4410.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.8019;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.46;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4410,489,0 chrXV 171288 . T C 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.850;QD=22.75;ReadPosRankSum=1.716;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:5051,585,0 chrXV 171805 . C T 4363.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.26;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4363,480,0 chrXV 171849 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.05;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3858,441,0 chrXV 172081 . G C 4925.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.9844;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.29;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4925,555,0 chrXV 172515 . T C 6869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=18.3705;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.557;QD=21.67;ReadPosRankSum=1.721;SB=-3.521e+03 GT:AD:DP:GQ:PL 1/1:1,316:317:99:6869,795,0 chrXV 172558 . A T 7165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=306;Dels=0.00;FS=3.304;HaplotypeScore=24.8099;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.291;QD=23.42;ReadPosRankSum=1.721;SB=-3.727e+03 GT:AD:DP:GQ:PL 1/1:1,305:306:99:7165,786,0 chrXV 172646 . C T 5817.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=17.7141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:5817,657,0 chrXV 173080 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.72;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4054,459,0 chrXV 173494 . A G 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.182;QD=22.69;ReadPosRankSum=1.702;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2642,297,0 chrXV 173907 . G A 6086.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:6086,672,0 chrXV 174057 . T A 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=6.307;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.198;QD=20.52;ReadPosRankSum=1.695;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3879,438,0 chrXV 174195 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.36;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3052,345,0 chrXV 174465 . G T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3697,402,0 chrXV 174675 . T C 2584 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5674;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.51;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2617,306,0 chrXV 174849 . C A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.5588;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.68;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3283,360,0 chrXV 175704 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.55;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4076,456,0 chrXV 176010 . G A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.8244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4687,510,0 chrXV 176359 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.187;QD=23.03;ReadPosRankSum=1.650;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2958,336,0 chrXV 176570 . G T 2380 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.44;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2413,264,0 chrXV 176587 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=18.52;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2292,264,0 chrXV 176601 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.08;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2474,276,0 chrXV 177738 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.13;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4579,495,0 chrXV 177825 . A G 4400.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.9884;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.40;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4400,492,0 chrXV 178021 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.6670;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.98;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4344,474,0 chrXV 178474 . T C 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=4.208;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.689;QD=22.06;ReadPosRankSum=1.690;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3684,417,0 chrXV 178587 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.04;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2959,336,0 chrXV 178731 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3654,405,0 chrXV 178992 . G C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4068,465,0 chrXV 179481 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3256,357,0 chrXV 179760 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4240,465,0 chrXV 180056 . A C 5107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=215;Dels=0.00;FS=3.134;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.291;QD=23.75;ReadPosRankSum=1.684;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:5107,585,0 chrXV 180123 . G C 4807.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.56;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4807,543,0 chrXV 180159 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=193;Dels=0.00;FS=8.442;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.217;QD=21.28;ReadPosRankSum=3.360;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:4107,471,0 chrXV 180177 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.53;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4177,462,0 chrXV 180210 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2916;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.72;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4083,447,0 chrXV 180271 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=174;Dels=0.00;FS=2.748;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.470;QD=23.36;ReadPosRankSum=2.393;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4064,465,0 chrXV 180390 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.58;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3395,387,0 chrXV 180534 . A G 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=103;Dels=0.00;FS=2.873;HaplotypeScore=5.9359;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.040;QD=20.35;ReadPosRankSum=2.139;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2129,243,0 chrXV 180685 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.61;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1913,210,0 chrXV 180906 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.720;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.142;QD=23.35;ReadPosRankSum=1.708;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3409,393,0 chrXV 181062 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.8307;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.85;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3202,354,0 chrXV 181290 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.99;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3914,426,0 chrXV 181470 . A G 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.639;QD=21.57;ReadPosRankSum=2.410;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2729,315,0 chrXV 181602 . C A 1860 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.03;FS=0.000;HaplotypeScore=91.4537;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.06;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1893,216,0 chrXV 181640 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.1112;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.14;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,98:102:99:1985,228,0 chrXV 182622 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.04;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3304,363,0 chrXV 182626 . T C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=3.219;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.058;QD=19.92;ReadPosRankSum=1.639;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3041,348,0 chrXV 182727 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=19.82;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3448,393,0 chrXV 182737 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=3.033;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.655;QD=19.24;ReadPosRankSum=2.420;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3266,375,0 chrXV 182738 . C A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.52;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3426,375,0 chrXV 182884 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.66;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4212,474,0 chrXV 182946 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.405;QD=22.55;ReadPosRankSum=1.640;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4262,495,0 chrXV 182971 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.6980;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.35;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3715,423,0 chrXV 183010 . A T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.99;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3547,396,0 chrXV 183184 . C T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.1649;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.83;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,196:201:99:4387,489,0 chrXV 183196 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.3394;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.21;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4198,462,0 chrXV 183244 . T C 4467.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.30;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4467,513,0 chrXV 183754 . T A 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.517;QD=24.21;ReadPosRankSum=1.641;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2793,300,0 chrXV 183991 . C T 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=3.443;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.530;QD=22.91;ReadPosRankSum=0.291;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3171,351,0 chrXV 184072 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.4741;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.25;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3790,414,0 chrXV 184246 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.26;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3675,417,0 chrXV 184291 . A C 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.269;QD=22.63;ReadPosRankSum=1.517;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3666,420,0 chrXV 184504 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.66;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4118,462,0 chrXV 184609 . T A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4160,483,0 chrXV 185107 . T C 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.701;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.357;QD=19.68;ReadPosRankSum=1.656;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2710,318,0 chrXV 185134 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=154;Dels=0.00;FS=2.904;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.309;QD=20.89;ReadPosRankSum=2.385;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3250,372,0 chrXV 185240 . A T 2967 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.1348;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.89;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3000,339,0 chrXV 185828 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.14;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1792,195,0 chrXV 185836 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.80;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1739,195,0 chrXV 185951 . T G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.836;QD=22.81;ReadPosRankSum=1.702;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2702,321,0 chrXV 186289 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.41;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3511,384,0 chrXV 186571 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.6397;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.17;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3553,387,0 chrXV 186679 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.37;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3196,363,0 chrXV 186762 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.72;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3749,423,0 chrXV 186791 . T A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.29;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3424,375,0 chrXV 186894 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=196;Dels=0.00;FS=2.991;HaplotypeScore=8.1617;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.845;QD=22.56;ReadPosRankSum=1.593;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4422,507,0 chrXV 186970 . T G 3193 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.2665;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.97;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3226,366,0 chrXV 187008 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.01;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3612,411,0 chrXV 187179 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=196;Dels=0.00;FS=2.836;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.445;QD=21.27;ReadPosRankSum=2.374;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4169,474,0 chrXV 187188 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.34;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4007,456,0 chrXV 187197 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=3.947;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=0.250;QD=19.29;ReadPosRankSum=1.698;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3877,444,0 chrXV 187423 . C T 4789.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=24.56;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4789,522,0 chrXV 187590 . T C 2482 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.96;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2515,285,0 chrXV 187911 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.11;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3289,357,0 chrXV 188321 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.88;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3042,327,0 chrXV 188616 . A C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.398;QD=23.34;ReadPosRankSum=1.638;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3524,402,0 chrXV 188662 . A T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.18;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3313,363,0 chrXV 188845 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.65;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1995,228,0 chrXV 188862 . G T 1956 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.59;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1989,225,0 chrXV 189241 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.61;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1744,198,0 chrXV 189256 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.43;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1568,180,0 chrXV 189304 . A C 1949 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.93;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1982,228,0 chrXV 189367 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.375;QD=22.03;ReadPosRankSum=1.696;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2170,252,0 chrXV 189446 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.70;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1151,129,0 chrXV 189546 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.30;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1474,162,0 chrXV 189547 . T C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.000;QD=18.99;ReadPosRankSum=1.683;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1381,162,0 chrXV 189653 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.26;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2265,252,0 chrXV 189700 . T A 2499 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.58;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2532,270,0 chrXV 189822 . A G 3099 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.0230;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.52;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3132,357,0 chrXV 189928 . T C 5267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.081;DP=241;Dels=0.00;FS=2.796;HaplotypeScore=19.2149;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.291;QD=21.85;ReadPosRankSum=2.409;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,238:241:99:5267,594,0 chrXV 190009 . G A 5160.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.3875;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.24;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5160,573,0 chrXV 191548 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.702;QD=22.47;ReadPosRankSum=1.685;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1696,192,0 chrXV 192333 . T G 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=4.963;HaplotypeScore=10.3249;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.152;QD=22.40;ReadPosRankSum=1.713;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4144,471,0 chrXV 192748 . C A 2967 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.19;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3000,333,0 chrXV 193609 . G A 4631.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.4236;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.37;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4631,516,0 chrXV 193743 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.7038;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=18.79;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:3984,447,0 chrXV 193761 . A G 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.123;DP=231;Dels=0.00;FS=15.313;HaplotypeScore=17.7350;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-2.800;QD=19.63;ReadPosRankSum=4.174;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:6,221:231:99:4535,522,0 chrXV 193911 . C T 6048.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=9.6304;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.00;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:6048,658,0 chrXV 194961 . T G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=17.2737;MLEAC=2;MLEAF=1.00;MQ=60.79;MQ0=0;MQRankSum=-1.147;QD=22.04;ReadPosRankSum=1.708;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3185,363,0 chrXV 195064 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.17;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3408,387,0 chrXV 195072 . A C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.070;QD=20.20;ReadPosRankSum=1.712;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3535,405,0 chrXV 195128 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.90;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3992,447,0 chrXV 195170 . C A 4702.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.63;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4702,525,0 chrXV 195386 . C A 4775.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.9765;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.31;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4775,522,0 chrXV 195644 . A C 5551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=241;Dels=0.00;FS=10.841;HaplotypeScore=12.3746;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.536;QD=23.03;ReadPosRankSum=2.946;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:5551,630,0 chrXV 195722 . G A 6271.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.58;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6271,711,0 chrXV 196238 . G A 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.503;QD=20.55;ReadPosRankSum=1.340;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2211,246,0 chrXV 196283 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.24;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2051,228,0 chrXV 196316 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.66;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1376,150,0 chrXV 196465 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.1712;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.62;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2470,276,0 chrXV 196572 . T C 2633 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.06;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2666,300,0 chrXV 196577 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.33;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2656,297,0 chrXV 196695 . T C 1872 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=13.37;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1905,219,0 chrXV 196803 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.78;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2842,312,0 chrXV 197127 . G T 130.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=16.27;SB=-7.917e+01 GT:AD:DP:GQ:PL 1/1:0,7:8:18:163,18,0 chrXV 197146 . A T 295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.908;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-2.023;QD=11.35;ReadPosRankSum=2.139;SB=-5.200e+01 GT:AD:DP:GQ:PL 1/1:7,19:26:36:328,36,0 chrXV 197183 . C T 1054 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=17.00;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1087,123,0 chrXV 197943 . T C 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=7.228;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.826;QD=20.70;ReadPosRankSum=2.400;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,195:200:99:4140,486,0 chrXV 197955 . G C 3844.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.51;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3844,450,0 chrXV 198213 . A C 4455.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.95;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4455,513,0 chrXV 198279 . G A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.6257;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.52;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:4455,492,0 chrXV 198587 . T G 4094.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.1059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4094,462,0 chrXV 198772 . A G 3165 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0622;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.55;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3198,363,0 chrXV 198926 . G A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.17;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3851,420,0 chrXV 199082 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.391;HaplotypeScore=11.5442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.240;QD=22.67;ReadPosRankSum=1.643;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3536,402,0 chrXV 199145 . A G 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5472;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.158;QD=22.03;ReadPosRankSum=1.714;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4252,489,0 chrXV 199186 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4075,468,0 chrXV 199433 . T C 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.979;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.676;QD=21.96;ReadPosRankSum=1.713;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4084,456,0 chrXV 199601 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.24;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3213,348,0 chrXV 200083 . T G 1917 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.29;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1950,225,0 chrXV 200794 . C G 3093 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7728;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.58;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3126,354,0 chrXV 201256 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3272,372,0 chrXV 201490 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2770,318,0 chrXV 202129 . T C 5816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=279;Dels=0.00;FS=6.924;HaplotypeScore=9.3602;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.236;QD=20.85;ReadPosRankSum=2.414;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:2,277:279:99:5816,663,0 chrXV 202185 . C T 6149.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=27.0617;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.43;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:6149,672,0 chrXV 202414 . C T 4946.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=21.7264;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.48;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4946,558,0 chrXV 202453 . C G 4875.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.44;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4875,546,0 chrXV 202640 . G A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.29;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4591,516,0 chrXV 202740 . T C 6322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.512;QD=23.68;ReadPosRankSum=1.719;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:6322,729,0 chrXV 202852 . G A 5847.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.1516;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.29;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:5847,651,0 chrXV 203056 . T G 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.324;QD=22.04;ReadPosRankSum=1.823;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:2,237:241:99:5311,606,0 chrXV 203132 . C T 5345.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.3715;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.27;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5345,585,0 chrXV 203170 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.20;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4728,552,0 chrXV 203233 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.4432;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.38;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4147,480,0 chrXV 203284 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=207;Dels=0.00;FS=11.534;HaplotypeScore=23.1140;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.519;QD=20.05;ReadPosRankSum=2.966;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4150,489,0 chrXV 203344 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.8974;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.58;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5171,567,0 chrXV 203386 . A C 4709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.677;QD=21.40;ReadPosRankSum=1.716;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4709,540,0 chrXV 203506 . A G 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=226;Dels=0.00;FS=2.916;HaplotypeScore=20.8386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.631;QD=21.66;ReadPosRankSum=2.394;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:2,220:226:99:4896,552,0 chrXV 203557 . T C 5297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=244;Dels=0.00;FS=2.971;HaplotypeScore=18.2728;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.428;QD=21.71;ReadPosRankSum=2.429;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5297,624,0 chrXV 203594 . C T 5985.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.6318;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.76;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,257:263:99:5985,649,0 chrXV 203632 . T C 5339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=240;Dels=0.00;FS=2.902;HaplotypeScore=15.0447;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.929;QD=22.25;ReadPosRankSum=2.378;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5339,609,0 chrXV 203803 . A G 5776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.695;DP=283;Dels=0.00;FS=5.634;HaplotypeScore=30.3447;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.462;QD=20.41;ReadPosRankSum=2.953;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:3,277:283:99:5776,654,0 chrXV 203890 . T C 5628.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.7750;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.55;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5628,636,0 chrXV 203923 . T C 5061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.6942;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.825;QD=21.63;ReadPosRankSum=1.702;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5061,588,0 chrXV 203947 . T C 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=223;Dels=0.00;FS=3.001;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.310;QD=21.21;ReadPosRankSum=2.416;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4730,540,0 chrXV 204043 . A G 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=232;Dels=0.00;FS=5.458;HaplotypeScore=10.5535;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=2.268;QD=21.35;ReadPosRankSum=2.554;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:4954,561,0 chrXV 204070 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.32;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4196,465,0 chrXV 204093 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.408;QD=20.11;ReadPosRankSum=1.671;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3419,399,0 chrXV 204409 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.15;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1805,198,0 chrXV 204475 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.76;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1543,174,0 chrXV 204645 . A G 987 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.93;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1020,117,0 chrXV 204904 . T C 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.860;QD=20.91;ReadPosRankSum=2.384;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2417,279,0 chrXV 205100 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.57;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3366,387,0 chrXV 205106 . T A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.12;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3582,396,0 chrXV 205126 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.676;QD=18.70;ReadPosRankSum=1.714;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3497,393,0 chrXV 205128 . A T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.63;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3539,396,0 chrXV 205234 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=149;Dels=0.00;FS=3.552;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.633;QD=19.22;ReadPosRankSum=1.684;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,144:149:99:2897,339,0 chrXV 205242 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.28;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3035,345,0 chrXV 205433 . G T 3172 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.66;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3205,357,0 chrXV 205475 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.66;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2802,321,0 chrXV 205541 . A T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.84;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3243,357,0 chrXV 205574 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.1516;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.54;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3743,417,0 chrXV 205723 . C G 3481.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.10;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3481,390,0 chrXV 205739 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.88;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3863,438,0 chrXV 205841 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4902;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.74;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3547,414,0 chrXV 205904 . T A 2369 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.08;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2402,264,0 chrXV 205962 . C A 2575 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.39;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2608,294,0 chrXV 205985 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.06;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3451,384,0 chrXV 206022 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=3.279;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.537;QD=21.67;ReadPosRankSum=1.680;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4333,498,0 chrXV 206130 . G A 5540.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=19.3462;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.98;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5540,624,0 chrXV 206259 . T A 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=1.527;QD=20.16;ReadPosRankSum=-1.490;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3749,417,0 chrXV 206268 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.091;QD=16.90;ReadPosRankSum=1.696;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3260,381,0 chrXV 206532 . C T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.14;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4142,456,0 chrXV 206545 . G T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.93;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3904,441,0 chrXV 206718 . A G 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.662;DP=158;Dels=0.00;FS=7.694;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-1.972;QD=17.62;ReadPosRankSum=3.773;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:5,151:158:99:2817,327,0 chrXV 206822 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7696;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.09;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3491,384,0 chrXV 206970 . T C 4513.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.59;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4513,519,0 chrXV 206985 . A G 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=218;Dels=0.00;FS=8.092;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.833;QD=19.51;ReadPosRankSum=2.415;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,213:218:99:4253,480,0 chrXV 207058 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4196;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.367;QD=23.62;ReadPosRankSum=1.690;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3897,441,0 chrXV 207203 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.4877;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.77;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4137,468,0 chrXV 207236 . T G 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.008;DP=190;Dels=0.00;FS=7.499;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-1.423;QD=19.58;ReadPosRankSum=2.424;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3720,420,0 chrXV 207252 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.10;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3924,441,0 chrXV 207320 . C T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.52;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4302,477,0 chrXV 207397 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.51;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:3882,438,0 chrXV 207408 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=20.37;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4360,477,0 chrXV 207452 . T G 5249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.689;QD=21.08;ReadPosRankSum=1.718;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5249,597,0 chrXV 207586 . C T 4620.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.59;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4620,525,0 chrXV 207629 . T C 5536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=256;Dels=0.00;FS=3.573;HaplotypeScore=16.2284;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.822;QD=21.63;ReadPosRankSum=1.691;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5536,630,0 chrXV 208002 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7952;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.86;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2806,315,0 chrXV 208010 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=144;Dels=0.00;FS=4.025;HaplotypeScore=7.2151;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.794;QD=18.87;ReadPosRankSum=1.708;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2750,318,0 chrXV 208100 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=150;Dels=0.00;FS=6.061;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.520;QD=20.86;ReadPosRankSum=2.953;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3162,363,0 chrXV 208106 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.19;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3085,345,0 chrXV 208220 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5432;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.91;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2690,300,0 chrXV 208244 . T A 2339 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.66;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2372,255,0 chrXV 208309 . T A 2117 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.16;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2150,237,0 chrXV 208421 . A G 2429 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.49;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2462,285,0 chrXV 208452 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.96;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2306,255,0 chrXV 208517 . A C 2755 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.55;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2788,318,0 chrXV 208556 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.818;QD=23.91;ReadPosRankSum=1.704;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3022,342,0 chrXV 208635 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=153;Dels=0.00;FS=5.651;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.638;QD=19.46;ReadPosRankSum=2.928;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3011,336,0 chrXV 208643 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.4361;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.99;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3192,354,0 chrXV 208678 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.0237;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.38;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3505,396,0 chrXV 208888 . C G 3806.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.87;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3806,426,0 chrXV 208904 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4732;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.89;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4097,447,0 chrXV 208980 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=166;Dels=0.00;FS=3.926;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.776;QD=19.71;ReadPosRankSum=1.711;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3272,384,0 chrXV 208985 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.87;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3506,393,0 chrXV 209157 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=154;Dels=0.00;FS=2.884;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.554;QD=22.55;ReadPosRankSum=2.369;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3472,393,0 chrXV 209222 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.887;QD=22.49;ReadPosRankSum=1.711;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3688,414,0 chrXV 209483 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.74;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3102,348,0 chrXV 209501 . A T 2830 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.8982;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=17.80;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2863,318,0 chrXV 209507 . T C 2715 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=17.08;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2748,315,0 chrXV 209582 . T C 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.480;QD=22.00;ReadPosRankSum=1.711;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3630,423,0 chrXV 209698 . T C 4489.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.56;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4489,510,0 chrXV 209867 . T G 3421.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.07;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3421,387,0 chrXV 209903 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=145;Dels=0.00;FS=4.564;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.175;QD=21.44;ReadPosRankSum=1.708;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3142,369,0 chrXV 209963 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9864;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.73;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2973,321,0 chrXV 209967 . A G 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=2.923;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.469;QD=19.75;ReadPosRankSum=2.379;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2778,315,0 chrXV 210056 . A G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=3.263;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.850;QD=21.75;ReadPosRankSum=1.699;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2360,270,0 chrXV 210115 . T C 2343 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=2.634;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.490;QD=18.30;ReadPosRankSum=2.411;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2376,270,0 chrXV 210116 . T C 2308 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=18.03;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2341,267,0 chrXV 210122 . A G 2279 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=16.28;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2312,273,0 chrXV 210403 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=3.595;HaplotypeScore=12.2014;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.885;QD=21.74;ReadPosRankSum=1.706;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2990,339,0 chrXV 210877 . T C 6525.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=18.8969;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.97;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:6525,732,0 chrXV 211015 . C T 5448.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.61;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5448,600,0 chrXV 211081 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.7083;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.22;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4499,528,0 chrXV 211117 . A G 5236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=239;Dels=0.00;FS=3.215;HaplotypeScore=21.6028;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-1.326;QD=21.91;ReadPosRankSum=1.718;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5236,600,0 chrXV 211164 . C G 4551.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.07;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,210:216:99:4551,522,0 chrXV 211180 . C T 4562.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.02;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4562,501,0 chrXV 211399 . A T 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.7566;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.101;QD=21.60;ReadPosRankSum=1.652;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3716,411,0 chrXV 211489 . T C 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=208;Dels=0.00;FS=6.082;HaplotypeScore=18.5278;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.191;QD=22.97;ReadPosRankSum=2.848;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:3,202:208:99:4778,543,0 chrXV 211576 . A T 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=205;Dels=0.00;FS=8.613;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.355;QD=23.00;ReadPosRankSum=2.377;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4714,534,0 chrXV 211684 . C T 4857.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.1548;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.91;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4857,531,0 chrXV 211687 . T C 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=241;Dels=0.00;FS=2.848;HaplotypeScore=6.9770;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.844;QD=19.43;ReadPosRankSum=2.429;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:4682,531,0 chrXV 212020 . C G 4256.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4256,486,0 chrXV 212816 . C T 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.7437;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-1.549;QD=23.17;ReadPosRankSum=0.799;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4843,540,0 chrXV 212987 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.41;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3674,399,0 chrXV 213206 . G C 4579.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.26;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4579,522,0 chrXV 213212 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=224;Dels=0.00;FS=8.245;HaplotypeScore=4.2023;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.400;QD=19.08;ReadPosRankSum=2.395;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4273,501,0 chrXV 213233 . A T 4653.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.3814;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.97;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4653,516,0 chrXV 213488 . T C 5225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.411;DP=238;Dels=0.00;FS=22.691;HaplotypeScore=18.2896;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.127;QD=21.95;ReadPosRankSum=4.445;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:7,228:238:99:5225,597,0 chrXV 213659 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.15;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3163,345,0 chrXV 213775 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2098,231,0 chrXV 214699 . A G 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=258;Dels=0.00;FS=6.280;HaplotypeScore=20.8665;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.977;QD=21.22;ReadPosRankSum=2.382;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:2,253:258:99:5475,633,0 chrXV 214734 . G A 4784.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.0794;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.98;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4784,543,0 chrXV 214789 . G A 4728.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.1928;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.49;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4728,543,0 chrXV 214878 . G A 5751.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.2311;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.76;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5751,625,0 chrXV 215043 . A G 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=17.0632;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.398;QD=21.28;ReadPosRankSum=1.697;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4255,483,0 chrXV 215265 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.52;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3253,363,0 chrXV 215310 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.57;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3797,435,0 chrXV 215484 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.49;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3508,399,0 chrXV 215496 . C G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.19;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3569,408,0 chrXV 215497 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.41;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3776,414,0 chrXV 215550 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.95;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4206,468,0 chrXV 215808 . C T 6047.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=17.3715;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.00;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:6047,669,0 chrXV 215865 . G A 5489.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.96;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5489,603,0 chrXV 215885 . A G 5026.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.0394;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.03;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5026,576,0 chrXV 216003 . A G 6007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.636;DP=283;Dels=0.00;FS=7.933;HaplotypeScore=21.6518;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-1.662;QD=21.23;ReadPosRankSum=3.746;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:5,278:283:99:6007,690,0 chrXV 216039 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;DP=230;Dels=0.00;FS=16.600;HaplotypeScore=17.4290;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-0.194;QD=18.36;ReadPosRankSum=3.278;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:4,225:230:99:4222,495,0 chrXV 216075 . G A 4830.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.6386;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=22.05;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4830,525,0 chrXV 216176 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=17.46;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,123:132:99:2338,264,0 chrXV 216247 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.96;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2716,297,0 chrXV 216376 . A G 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=6.594;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=1.635;QD=23.43;ReadPosRankSum=1.654;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4218,483,0 chrXV 216399 . C A 4552.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=24.61;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4552,495,0 chrXV 216499 . A T 5062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=228;Dels=0.00;FS=4.422;HaplotypeScore=17.7825;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.228;QD=22.20;ReadPosRankSum=1.702;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5062,564,0 chrXV 217333 . T C 4986.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.8813;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.96;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4986,567,0 chrXV 217521 . G A 4901.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.9784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4901,543,0 chrXV 218142 . G A 5334.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.1958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5334,591,0 chrXV 218547 . C T 713 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:84:746,84,0 chrXV 219124 . G T 5609.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.71;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5609,609,0 chrXV 219136 . C T 5953.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=7.6302;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.55;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5953,648,0 chrXV 219822 . C T 4709.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.11;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:4709,534,0 chrXV 219832 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=270;Dels=0.00;FS=3.003;HaplotypeScore=10.9686;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.223;QD=17.38;ReadPosRankSum=2.350;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:2,268:270:99:4693,537,0 chrXV 219936 . C T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.01;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4543,519,0 chrXV 219960 . T C 4901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.989;DP=240;Dels=0.00;FS=14.336;HaplotypeScore=18.2869;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.599;QD=20.42;ReadPosRankSum=3.352;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:4,236:240:99:4901,552,0 chrXV 220116 . T G 5150.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.9607;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.29;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5150,582,0 chrXV 220335 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.3235;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.18;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:3875,432,0 chrXV 220341 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.58;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3698,411,0 chrXV 220371 . T A 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=3.092;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.290;QD=16.59;ReadPosRankSum=1.689;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2704,297,0 chrXV 220633 . T A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.38;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4279,477,0 chrXV 220730 . A G 168.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.577;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=123.7199;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=0;MQRankSum=-0.427;QD=1.16;ReadPosRankSum=-5.142;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:133,12:145:33:198,0,33 chrXV 220731 . A G 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=123.7199;MLEAC=1;MLEAF=0.500;MQ=55.71;MQ0=0;MQRankSum=-0.132;QD=0.15;ReadPosRankSum=5.312;SB=-1.526e+03 GT:AD:DP:GQ:PL 0/1:12,134:146:52:52,0,178 chrXV 220880 . G A 4008.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.64;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4008,441,0 chrXV 220974 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.67;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3854,435,0 chrXV 221075 . G C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1360;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.53;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4070,462,0 chrXV 221112 . A G 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=3.184;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.087;QD=23.24;ReadPosRankSum=1.713;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4183,480,0 chrXV 221192 . C A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.79;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3430,369,0 chrXV 221206 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=20.23;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3249,357,0 chrXV 221576 . T C 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.563;QD=22.14;ReadPosRankSum=1.694;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4096,468,0 chrXV 221841 . G T 2048 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.50;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2081,228,0 chrXV 221858 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=16.87;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1771,195,0 chrXV 221862 . C T 1776 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=17.24;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1809,204,0 chrXV 221900 . T C 1853 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.91;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1886,213,0 chrXV 222314 . A G 2860 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.34;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2893,327,0 chrXV 222653 . C T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.69;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3630,402,0 chrXV 222852 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.11;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3588,405,0 chrXV 222860 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.38;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3648,399,0 chrXV 222869 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.733;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.159;QD=20.50;ReadPosRankSum=1.647;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3341,378,0 chrXV 223192 . A G 2481 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.03;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2514,285,0 chrXV 223207 . T A 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=119;Dels=0.00;FS=6.131;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.196;QD=20.37;ReadPosRankSum=2.408;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2457,270,0 chrXV 223438 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.37;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3344,363,0 chrXV 223454 . G T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.52;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3257,363,0 chrXV 223663 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=190;Dels=0.00;FS=2.804;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.226;QD=21.58;ReadPosRankSum=2.424;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4101,471,0 chrXV 223729 . C T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.9944;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.69;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3802,417,0 chrXV 224526 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.40;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3378,375,0 chrXV 224654 . T C 4368.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8914;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.06;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4368,501,0 chrXV 225905 . A G 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.540;QD=23.25;ReadPosRankSum=1.713;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4185,480,0 chrXV 226333 . T G 2902 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.50;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2935,330,0 chrXV 226460 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=21.30;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2610,291,0 chrXV 226468 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=21.15;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2507,285,0 chrXV 226491 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=20.95;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2526,279,0 chrXV 226512 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=18.21;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2309,261,0 chrXV 226516 . G C 2170 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=17.09;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2203,255,0 chrXV 226585 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=17.60;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2022,228,0 chrXV 226694 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.11;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1870,219,0 chrXV 226710 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.16;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1908,210,0 chrXV 226772 . A G 2420 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.00;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2453,279,0 chrXV 226817 . G T 2712 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=21.70;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2745,300,0 chrXV 227513 . T A 2469 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=21.85;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2502,273,0 chrXV 227538 . G T 2513 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6665;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.79;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2546,276,0 chrXV 227560 . T A 2721 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.31;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2754,306,0 chrXV 227572 . T A 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=143;Dels=0.00;FS=3.005;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-1.453;QD=19.03;ReadPosRankSum=2.415;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2754,318,0 chrXV 227702 . T C 2212 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.34;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2245,255,0 chrXV 227759 . T G 2496 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.33;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2529,285,0 chrXV 228001 . A C 1680 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.82;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1713,195,0 chrXV 228047 . T A 1614 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=21.81;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1647,189,0 chrXV 228249 . A T 195.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.788;DP=56;Dels=0.00;FS=14.472;HaplotypeScore=49.1062;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;MQRankSum=0.287;QD=3.48;ReadPosRankSum=1.832;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:2,54:56:27:228,27,0 chrXV 228291 . T A 806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-0.892;QD=12.21;ReadPosRankSum=1.680;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:93:839,93,0 chrXV 229235 . A G 6633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=24.5714;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.720;QD=22.72;ReadPosRankSum=1.684;SB=-3.478e+03 GT:AD:DP:GQ:PL 1/1:1,288:292:99:6633,744,0 chrXV 229539 . T C 6511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.737;DP=290;Dels=0.00;FS=17.214;HaplotypeScore=16.0432;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.367;QD=22.45;ReadPosRankSum=3.770;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:5,282:290:99:6511,735,0 chrXV 229674 . G A 4666.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.54;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4666,519,0 chrXV 229703 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3543;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=17.66;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3320,384,0 chrXV 229704 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.2561;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.29;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3568,393,0 chrXV 229851 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.756;QD=19.70;ReadPosRankSum=2.337;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2180,246,0 chrXV 230045 . C T 787 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=27.2433;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=8.11;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:93:820,93,0 chrXV 230066 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=15.96;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1629,186,0 chrXV 230105 . G T 3156 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.18;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3189,354,0 chrXV 230282 . C T 5438.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=23.54;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5438,600,0 chrXV 230361 . A T 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=192;Dels=0.00;FS=9.950;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.524;QD=21.98;ReadPosRankSum=2.901;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4221,465,0 chrXV 230379 . A G 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=192;Dels=0.00;FS=10.397;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.639;QD=20.46;ReadPosRankSum=2.922;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3928,447,0 chrXV 230474 . C T 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.7007;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.745;QD=21.22;ReadPosRankSum=0.702;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3353,381,0 chrXV 230491 . G A 2689 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=2.741;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=0.309;QD=17.35;ReadPosRankSum=2.259;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2722,303,0 chrXV 230492 . A G 2649 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=154;Dels=0.00;FS=2.762;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=-2.144;QD=17.20;ReadPosRankSum=2.321;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:2682,306,0 chrXV 230499 . T G 2604 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=4.050;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=-0.726;QD=16.80;ReadPosRankSum=1.665;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2637,306,0 chrXV 230592 . T A 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=156;Dels=0.00;FS=4.372;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.244;QD=18.19;ReadPosRankSum=1.643;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2871,315,0 chrXV 230614 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.71;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2821,312,0 chrXV 230706 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.3429;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.69;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,169:175:99:4145,462,0 chrXV 230792 . A T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.7063;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=24.86;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4499,495,0 chrXV 230852 . T C 4469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=192;Dels=0.00;FS=3.025;HaplotypeScore=11.4972;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.454;QD=23.28;ReadPosRankSum=2.386;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4469,504,0 chrXV 231024 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=203;Dels=0.00;FS=3.120;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.974;QD=19.46;ReadPosRankSum=1.715;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:3950,456,0 chrXV 231041 . G A 3770.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=19.84;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3770,423,0 chrXV 231089 . G C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=18.55;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3580,420,0 chrXV 231231 . A G 2814 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.54;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2847,327,0 chrXV 231460 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.36;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1732,192,0 chrXV 231541 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.0981;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.59;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3037,339,0 chrXV 231663 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.81;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2585,285,0 chrXV 232193 . A G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=137;Dels=0.00;FS=3.274;HaplotypeScore=14.5407;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.070;QD=21.20;ReadPosRankSum=1.707;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2937,333,0 chrXV 232665 . T C 4613.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.6796;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.07;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4613,522,0 chrXV 232710 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.919;QD=22.33;ReadPosRankSum=1.697;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4376,501,0 chrXV 232797 . C T 5198.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.0940;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.74;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5198,579,0 chrXV 233126 . C A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.3545;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.19;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4079,468,0 chrXV 233142 . A G 4384.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.93;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4384,495,0 chrXV 233424 . A G 4824.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=18.2204;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.75;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4824,543,0 chrXV 233544 . G C 3522.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.48;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3522,408,0 chrXV 233742 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=154;Dels=0.00;FS=6.459;HaplotypeScore=16.0938;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.008;QD=23.58;ReadPosRankSum=2.353;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3632,408,0 chrXV 234020 . T C 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=7.163;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.098;QD=22.60;ReadPosRankSum=2.305;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2338,270,0 chrXV 234124 . G T 2642 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=21.0361;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.31;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2675,294,0 chrXV 234579 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.204;QD=21.92;ReadPosRankSum=1.686;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3310,384,0 chrXV 234673 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.94;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3257,363,0 chrXV 234731 . A G 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=145;Dels=0.00;FS=5.883;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.063;QD=20.54;ReadPosRankSum=2.909;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:3012,351,0 chrXV 235143 . C T 5056.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.8065;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.79;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5056,576,0 chrXV 235233 . A C 4720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=252;Dels=0.00;FS=8.216;HaplotypeScore=12.7529;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;MQRankSum=-1.267;QD=18.73;ReadPosRankSum=2.390;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:2,247:252:99:4720,537,0 chrXV 235239 . G A 4550.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.9129;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=18.80;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:4550,534,0 chrXV 235271 . C A 4647.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.84;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4647,528,0 chrXV 235374 . A G 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.5126;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;MQRankSum=-0.790;QD=18.81;ReadPosRankSum=1.718;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:2,238:242:99:4551,513,0 chrXV 235398 . G A 4298.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;DP=354;Dels=0.00;FS=3.173;HaplotypeScore=9.7249;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;MQRankSum=-0.103;QD=12.14;ReadPosRankSum=0.289;SB=-4.487e+03 GT:AD:DP:GQ:PL 1/1:1,352:354:99:4298,471,0 chrXV 235404 . G A 1769.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=10.614;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=9.7456;MLEAC=1;MLEAF=0.500;MQ=38.74;MQ0=0;MQRankSum=-3.137;QD=5.08;ReadPosRankSum=-13.174;SB=-1.340e+03 GT:AD:DP:GQ:PL 0/1:206,141:348:99:1799,0,1282 chrXV 235407 . G A 1392.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=10.285;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=16.2242;MLEAC=1;MLEAF=0.500;MQ=38.97;MQ0=0;MQRankSum=-2.457;QD=3.97;ReadPosRankSum=-13.264;SB=-1.165e+03 GT:AD:DP:GQ:PL 0/1:219,129:351:99:1422,0,1539 chrXV 235425 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.9781;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=11.40;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:2905,330,0 chrXV 235950 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=176;Dels=0.00;FS=3.399;HaplotypeScore=9.3632;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.208;QD=19.38;ReadPosRankSum=1.712;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3411,390,0 chrXV 235959 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.6879;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.98;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3596,402,0 chrXV 236244 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=17.76;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3516,387,0 chrXV 236250 . A C 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=183;Dels=0.00;FS=8.901;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;MQRankSum=-2.221;QD=16.19;ReadPosRankSum=2.409;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:2995,339,0 chrXV 236256 . T C 2259 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=166.1396;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=14.96;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2292,261,0 chrXV 236316 . A T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.54;SB=-2.158e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:6:53,6,0 chrXV 236319 . G A 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.53;SB=-2.955e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:12:109,12,0 chrXV 236322 . A T 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.45;SB=-3.305e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:12:115,12,0 chrXV 236325 . G A 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.20;SB=-3.755e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:12:107,12,0 chrXV 236328 . A T 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.22;SB=-4.495e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:12:113,12,0 chrXV 236331 . G A 176.03 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=2;QD=2.07;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:24:209,24,0 chrXV 236334 . A T 216.01 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=2;QD=2.35;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:27:249,27,0 chrXV 236340 . C T 345 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=3;QD=3.14;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:42:378,42,0 chrXV 236346 . G A 572 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=3;QD=4.61;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:69:605,69,0 chrXV 236985 . A G 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-7.551;DP=240;Dels=0.00;FS=3.630;HaplotypeScore=50.2439;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;MQRankSum=-0.583;QD=9.30;ReadPosRankSum=7.136;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:104,136:240:99:2264,182,0 chrXV 236994 . G A 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.412;DP=257;Dels=0.00;FS=1.945;HaplotypeScore=70.2456;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=0.872;QD=6.65;ReadPosRankSum=-4.281;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:20,237:257:99:1741,174,0 chrXV 236997 . A G 1169.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.534;DP=263;Dels=0.00;FS=9.319;HaplotypeScore=64.3943;MLEAC=1;MLEAF=0.500;MQ=44.89;MQ0=0;MQRankSum=-4.874;QD=4.45;ReadPosRankSum=0.491;SB=-7.395e+02 GT:AD:DP:GQ:PL 0/1:173,90:263:1:1198,0,1 chrXV 237009 . G A 990.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.800;DP=268;Dels=0.00;FS=3.047;HaplotypeScore=20.2366;MLEAC=1;MLEAF=0.500;MQ=45.64;MQ0=0;MQRankSum=-6.467;QD=3.69;ReadPosRankSum=-6.944;SB=-6.410e+02 GT:AD:DP:GQ:PL 0/1:190,78:268:54:1020,0,54 chrXV 237024 . A G 223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.248;DP=277;Dels=0.00;FS=6.060;HaplotypeScore=10.2553;MLEAC=1;MLEAF=0.500;MQ=48.39;MQ0=0;MQRankSum=-6.688;QD=0.81;ReadPosRankSum=-9.061;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:231,46:277:99:253,0,1628 chrXV 237471 . A C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.997;QD=20.85;ReadPosRankSum=1.708;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3139,366,0 chrXV 237769 . G C 3624.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.96;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,160:165:99:3624,411,0 chrXV 237835 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9923;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.60;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3434,396,0 chrXV 238432 . C T 1536 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1569,174,0 chrXV 238440 . G C 1451 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1484,171,0 chrXV 238504 . C A 1569 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1602,174,0 chrXV 238507 . T A 1519 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=15.99;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1552,180,0 chrXV 238554 . T C 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.108;QD=20.77;ReadPosRankSum=2.391;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2629,303,0 chrXV 238590 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.67;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3701,423,0 chrXV 238753 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.601;QD=21.56;ReadPosRankSum=1.713;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3989,459,0 chrXV 238924 . A C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=12.9865;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.408;QD=23.02;ReadPosRankSum=1.489;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3614,414,0 chrXV 238980 . A C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.79;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3464,393,0 chrXV 239041 . G T 3086 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.78;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3119,348,0 chrXV 239053 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.45;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2874,324,0 chrXV 239353 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.88;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4210,468,0 chrXV 239847 . A G 2835 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.48;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2868,330,0 chrXV 240089 . T C 2769 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3983;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=16.78;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2802,330,0 chrXV 240094 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.26;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3119,348,0 chrXV 240194 . T A 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.862;QD=23.88;ReadPosRankSum=1.678;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4562,513,0 chrXV 240239 . T A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.40;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4489,495,0 chrXV 240519 . A T 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.368;QD=20.68;ReadPosRankSum=1.678;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2659,303,0 chrXV 240538 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.17;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2848,318,0 chrXV 241147 . A C 3662.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.91;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3662,414,0 chrXV 241190 . A C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.83;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3384,387,0 chrXV 241207 . T G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=146;Dels=0.00;FS=2.973;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.760;QD=21.04;ReadPosRankSum=2.415;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3105,357,0 chrXV 241259 . A G 3129 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.19;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3162,363,0 chrXV 241438 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.14;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1597,177,0 chrXV 241442 . C G 1576 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.01;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1609,183,0 chrXV 241534 . T A 318 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.71;SB=-8.200e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:39:351,39,0 chrXV 241586 . A C 926 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:959,105,0 chrXV 241632 . A G 1824 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.99;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1857,207,0 chrXV 241704 . A G 1036 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.50;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1069,120,0 chrXV 241710 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.04;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1007,114,0 chrXV 242267 . T C 6524.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.65;SB=-3.321e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6524,747,0 chrXV 242488 . T C 5021.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.9993;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.64;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5021,573,0 chrXV 242558 . T C 4584.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.00;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4584,537,0 chrXV 242598 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.26;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2917,321,0 chrXV 242641 . C G 1811 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1844,213,0 chrXV 242766 . C G 1696 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.84;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,85:90:99:1729,189,0 chrXV 242786 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.59;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1167,129,0 chrXV 243025 . C A 1685 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.08;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1718,186,0 chrXV 243033 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.58;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1930,210,0 chrXV 243128 . T C 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.060;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=14.6720;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.629;QD=16.14;ReadPosRankSum=1.623;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:5,116:122:99:2002,231,0 chrXV 243211 . A G 1935 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.55;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1968,231,0 chrXV 243259 . C A 2852 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.63;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2885,324,0 chrXV 243303 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.86;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3316,375,0 chrXV 243335 . C G 2719 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.3583;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.66;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2752,312,0 chrXV 243831 . G A 4721.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.37;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4721,522,0 chrXV 244393 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.89;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3098,345,0 chrXV 244783 . G A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.90;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3595,387,0 chrXV 244803 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.71;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3396,396,0 chrXV 245153 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.533;QD=23.07;ReadPosRankSum=1.688;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3599,408,0 chrXV 245302 . A G 4884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=4.114;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.884;QD=24.79;ReadPosRankSum=1.714;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4884,546,0 chrXV 245875 . G C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3394,390,0 chrXV 245956 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.82;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2840,318,0 chrXV 246022 . T C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.304;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.728;QD=22.74;ReadPosRankSum=1.635;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2466,282,0 chrXV 246178 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.49;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2734,300,0 chrXV 246679 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3042,333,0 chrXV 247071 . G A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3284,357,0 chrXV 247117 . C A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4347,477,0 chrXV 247341 . A G 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.282;QD=21.26;ReadPosRankSum=1.705;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2818,315,0 chrXV 247462 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.931;QD=22.51;ReadPosRankSum=1.706;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3049,342,0 chrXV 248324 . A T 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=144;Dels=0.00;FS=3.039;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.851;QD=22.19;ReadPosRankSum=2.398;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3228,375,0 chrXV 248365 . C G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.1373;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.76;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,158:163:99:3710,423,0 chrXV 248980 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.6231;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.50;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4118,456,0 chrXV 249136 . A G 3121 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.4867;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.78;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3154,360,0 chrXV 249246 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=17.65;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1710,189,0 chrXV 249250 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.80;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1706,189,0 chrXV 249391 . A C 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5763;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.661;QD=20.63;ReadPosRankSum=-1.625;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2034,231,0 chrXV 249478 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.14;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3517,390,0 chrXV 249516 . A G 3143 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.53;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3176,363,0 chrXV 249588 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2580,291,0 chrXV 249801 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3303,360,0 chrXV 249941 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.13;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3644,417,0 chrXV 249980 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4050,453,0 chrXV 250043 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=172;Dels=0.00;FS=16.621;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.320;QD=23.33;ReadPosRankSum=3.368;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:4013,459,0 chrXV 250139 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.68;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3090,354,0 chrXV 250259 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1918;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.43;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3790,429,0 chrXV 250527 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.05;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3734,411,0 chrXV 251243 . G A 858 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=17.87;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:891,102,0 chrXV 251789 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.38;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3364,375,0 chrXV 252485 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=164;Dels=0.00;FS=2.783;HaplotypeScore=11.8001;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.817;QD=19.10;ReadPosRankSum=2.390;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3165,366,0 chrXV 252641 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.36;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2554,282,0 chrXV 252891 . T C 1225 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.69;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1258,141,0 chrXV 253882 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=18.42;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2594,288,0 chrXV 253883 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=18.73;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2636,288,0 chrXV 253895 . G T 2685 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=16.47;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2718,297,0 chrXV 253929 . C A 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=144;Dels=0.00;FS=3.297;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=-1.241;QD=12.43;ReadPosRankSum=1.609;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:1823,204,0 chrXV 253930 . A C 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=-1.462;QD=11.87;ReadPosRankSum=1.708;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:1743,201,0 chrXV 253966 . A C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.412;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=-1.638;QD=13.51;ReadPosRankSum=1.709;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2019,231,0 chrXV 254016 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.82;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2966,327,0 chrXV 254203 . T A 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.571;HaplotypeScore=9.6722;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.706;QD=20.78;ReadPosRankSum=1.706;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2776,312,0 chrXV 254413 . C A 3028 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.63;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3061,342,0 chrXV 254619 . G T 1302 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.69;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1335,144,0 chrXV 254857 . C G 407 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.70;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:51:440,51,0 chrXV 254962 . T C 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.825;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.214;QD=18.84;ReadPosRankSum=1.825;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1446,165,0 chrXV 254966 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.92;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1721,186,0 chrXV 255018 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-1.121;QD=18.11;ReadPosRankSum=2.394;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1663,183,0 chrXV 255031 . T C 1990 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.31;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2023,225,0 chrXV 255070 . A G 1902 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=15.72;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1935,219,0 chrXV 255071 . T C 1907 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=15.26;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1940,222,0 chrXV 255163 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.87;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3132,348,0 chrXV 255181 . A G 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=164;Dels=0.00;FS=3.147;HaplotypeScore=10.1687;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.699;QD=19.52;ReadPosRankSum=1.711;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3234,372,0 chrXV 255268 . G A 5341.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.92;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5341,624,0 chrXV 256235 . C A 2802 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1489;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.39;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2835,327,0 chrXV 256322 . A C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.128;QD=21.49;ReadPosRankSum=1.669;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2418,282,0 chrXV 256343 . T C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=142;Dels=0.00;FS=6.629;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.776;QD=21.47;ReadPosRankSum=2.415;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3082,351,0 chrXV 256395 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.27;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2850,312,0 chrXV 256412 . A G 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=125;Dels=0.00;FS=2.573;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-1.675;QD=18.58;ReadPosRankSum=2.943;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2355,273,0 chrXV 256446 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=17.10;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1418,162,0 chrXV 256457 . A G 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.024;QD=16.22;ReadPosRankSum=1.685;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1217,141,0 chrXV 256963 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.7013;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.94;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4765,528,0 chrXV 257252 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=189;Dels=0.00;FS=2.710;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.052;QD=19.93;ReadPosRankSum=2.306;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:3767,423,0 chrXV 257396 . A C 2928 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2961,339,0 chrXV 257554 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.50;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2688,294,0 chrXV 257615 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=16.6380;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.308;QD=22.11;ReadPosRankSum=0.201;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:2,114:120:99:2686,306,0 chrXV 257863 . G T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.3215;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.55;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4827,528,0 chrXV 257954 . T C 4831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=3.873;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.108;QD=21.76;ReadPosRankSum=1.654;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4831,555,0 chrXV 257986 . A G 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.356;QD=21.32;ReadPosRankSum=1.716;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4669,534,0 chrXV 258043 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.61;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4322,495,0 chrXV 258408 . G A 5226.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.31;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5226,570,0 chrXV 258436 . A T 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.345;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.299;QD=22.22;ReadPosRankSum=1.716;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4800,528,0 chrXV 258470 . T A 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.051;QD=20.53;ReadPosRankSum=1.694;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3757,411,0 chrXV 258539 . G C 4090.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.8106;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.99;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4090,468,0 chrXV 258715 . T C 5220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=246;Dels=0.00;FS=2.562;HaplotypeScore=9.5614;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.668;QD=21.22;ReadPosRankSum=2.898;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:3,242:246:99:5220,585,0 chrXV 258736 . G A 5770.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.19;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5770,636,0 chrXV 258794 . A G 5591.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.8499;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.02;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5591,651,0 chrXV 259315 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.71;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3904,441,0 chrXV 259644 . T G 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.184;QD=24.15;ReadPosRankSum=2.391;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,165:170:99:4106,471,0 chrXV 259706 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=5.355;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=0.447;QD=20.07;ReadPosRankSum=1.686;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3064,351,0 chrXV 259707 . A G 3035 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.37;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3068,345,0 chrXV 259721 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=17.86;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3016,327,0 chrXV 259779 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=14.93;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2914,330,0 chrXV 259780 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=15.58;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3040,333,0 chrXV 259797 . G A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.5858;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=14.29;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:3249,375,0 chrXV 259799 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=3.673;HaplotypeScore=3.5858;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;MQRankSum=0.858;QD=14.10;ReadPosRankSum=1.717;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:3219,363,0 chrXV 259825 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=13.96;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:3203,351,0 chrXV 259841 . T A 3038 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=13.68;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:3071,345,0 chrXV 259967 . T C 5610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=241;Dels=0.00;FS=2.865;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=1.614;QD=23.28;ReadPosRankSum=1.584;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5610,639,0 chrXV 260183 . T A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.8521;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.40;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3837,426,0 chrXV 260426 . G T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3396,372,0 chrXV 260576 . A G 3138 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.20;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3171,363,0 chrXV 260613 . T G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=141;Dels=0.00;FS=7.149;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.546;QD=21.07;ReadPosRankSum=2.395;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,134:141:99:3004,342,0 chrXV 260677 . C G 3383.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.82;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3383,387,0 chrXV 260759 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.044;QD=21.52;ReadPosRankSum=1.708;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3196,363,0 chrXV 260837 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.116;QD=22.58;ReadPosRankSum=1.703;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2697,318,0 chrXV 260864 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=134;Dels=0.00;FS=6.389;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.434;QD=22.54;ReadPosRankSum=2.376;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3054,348,0 chrXV 260906 . T A 2959 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9527;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.59;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2992,333,0 chrXV 261194 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3928,438,0 chrXV 261299 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.99;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3134,345,0 chrXV 261489 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8917;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.15;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,174:179:99:4143,447,0 chrXV 261556 . C A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2871;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.65;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3831,417,0 chrXV 261583 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.6643;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.67;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3658,405,0 chrXV 261665 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=167;Dels=0.00;FS=2.996;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.037;QD=23.05;ReadPosRankSum=2.361;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3849,435,0 chrXV 261788 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.115;QD=22.66;ReadPosRankSum=1.661;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3308,381,0 chrXV 261915 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=142;Dels=0.00;FS=4.447;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.025;QD=22.23;ReadPosRankSum=1.659;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3189,372,0 chrXV 261959 . A C 3851.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.92;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3851,435,0 chrXV 262002 . T C 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=3.035;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.643;QD=23.71;ReadPosRankSum=1.712;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4173,474,0 chrXV 262203 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.00;FS=3.040;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.024;QD=23.70;ReadPosRankSum=2.417;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3579,399,0 chrXV 262766 . G A 4534.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.37;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4534,501,0 chrXV 263030 . G T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.1727;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.09;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3579,396,0 chrXV 263881 . A T 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.772;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.618;QD=24.99;ReadPosRankSum=1.684;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3573,402,0 chrXV 264294 . G A 5861.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=10.4617;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.47;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5861,639,0 chrXV 264516 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=154;Dels=0.00;FS=3.458;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.438;QD=22.47;ReadPosRankSum=1.257;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3460,387,0 chrXV 264548 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.06;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2981,333,0 chrXV 264557 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=138;Dels=0.00;FS=14.221;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.767;QD=20.05;ReadPosRankSum=2.949;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2800,315,0 chrXV 264609 . T A 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7744;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.095;QD=20.37;ReadPosRankSum=1.678;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2620,294,0 chrXV 264752 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=21.2518;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.74;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3296,378,0 chrXV 264888 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.16;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2551,279,0 chrXV 264924 . A C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.122;QD=21.47;ReadPosRankSum=1.522;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2180,252,0 chrXV 264971 . T G 2903 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8175;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.04;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2936,330,0 chrXV 265232 . T A 1442 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1475,159,0 chrXV 265983 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.9182;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3744,435,0 chrXV 266197 . A G 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.062;QD=18.65;ReadPosRankSum=1.676;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1189,135,0 chrXV 266234 . T C 828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.330;QD=19.71;ReadPosRankSum=1.650;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:96:861,96,0 chrXV 266279 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1580,177,0 chrXV 266696 . C T 2448 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.25;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2481,270,0 chrXV 266759 . T G 2809 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.41;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2842,321,0 chrXV 266963 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.59;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3012,333,0 chrXV 266966 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.11;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3009,333,0 chrXV 267104 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.375;QD=23.05;ReadPosRankSum=1.711;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3804,429,0 chrXV 267165 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.40;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4189,456,0 chrXV 267320 . G C 4057.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.05;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:4057,468,0 chrXV 267577 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.50;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3983,435,0 chrXV 267756 . G A 4677.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.17;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4677,525,0 chrXV 267906 . G C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.23;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3561,417,0 chrXV 267912 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.48;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3441,396,0 chrXV 267950 . T C 3568.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.51;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3568,402,0 chrXV 268100 . A T 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=4.712;HaplotypeScore=7.4359;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.657;QD=24.23;ReadPosRankSum=1.708;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3562,402,0 chrXV 268222 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=4.647;HaplotypeScore=8.4754;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.410;QD=22.92;ReadPosRankSum=1.712;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3966,456,0 chrXV 268330 . C T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.5197;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.65;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3788,411,0 chrXV 268456 . T C 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=198;Dels=0.00;FS=2.557;HaplotypeScore=16.4145;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.056;QD=21.25;ReadPosRankSum=2.904;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4207,486,0 chrXV 269276 . G T 4929.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=23.70;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4929,543,0 chrXV 269458 . A G 1318 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=6.52;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:1351,159,0 chrXV 269468 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=7.98;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:1821,207,0 chrXV 269497 . T C 2439 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.9095;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=10.84;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:2472,285,0 chrXV 269591 . A G 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2094;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-1.670;QD=17.12;ReadPosRankSum=1.701;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1933,225,0 chrXV 269647 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=18.58;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2188,266,0 chrXV 269686 . T C 1907 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=19.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1940,225,0 chrXV 269781 . T C 857 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.80;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:890,99,0 chrXV 269941 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=25.15;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2925,321,0 chrXV 270070 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=216;Dels=0.00;FS=2.859;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.565;QD=20.85;ReadPosRankSum=2.427;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4503,519,0 chrXV 270103 . T C 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=212;Dels=0.00;FS=6.915;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.216;QD=20.62;ReadPosRankSum=2.426;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4372,498,0 chrXV 270164 . G A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.70;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4274,486,0 chrXV 270370 . T C 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.692;DP=224;Dels=0.00;FS=12.182;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.228;QD=20.89;ReadPosRankSum=3.818;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:5,219:224:99:4680,531,0 chrXV 270433 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.171;DP=219;Dels=0.00;FS=14.765;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=2.159;QD=17.61;ReadPosRankSum=3.832;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:6,213:219:99:3857,423,0 chrXV 270435 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=218;Dels=0.03;FS=0.000;HaplotypeScore=7.5793;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-0.572;QD=16.40;ReadPosRankSum=1.683;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:3576,414,0 chrXV 270444 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=219;Dels=0.00;FS=5.896;HaplotypeScore=9.3596;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-1.355;QD=15.81;ReadPosRankSum=2.931;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:3463,393,0 chrXV 270451 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=218;Dels=0.00;FS=2.899;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.343;QD=15.44;ReadPosRankSum=2.427;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:3365,381,0 chrXV 270526 . C G 4302.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.7057;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.40;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4302,480,0 chrXV 270687 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=19.0023;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.517;QD=19.67;ReadPosRankSum=1.712;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3443,396,0 chrXV 270735 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.90;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3720,432,0 chrXV 270906 . C T 5568.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.45;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5568,606,0 chrXV 270921 . G C 4838.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.2205;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.13;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4838,555,0 chrXV 271041 . C T 5116.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.494;DP=275;Dels=0.00;FS=22.681;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=1.995;QD=18.60;ReadPosRankSum=4.369;SB=-3.362e+03 GT:AD:DP:GQ:PL 1/1:7,268:275:99:5116,561,0 chrXV 271045 . T C 4947.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=278;Dels=0.03;FS=3.450;HaplotypeScore=11.0646;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.372;QD=17.79;ReadPosRankSum=1.668;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:1,269:271:99:4947,564,0 chrXV 271047 . A G 5071.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=14.1646;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.673;QD=18.11;ReadPosRankSum=1.707;SB=-3.146e+03 GT:AD:DP:GQ:PL 1/1:1,277:280:99:5071,594,0 chrXV 271168 . G A 5485.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.18;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5485,603,0 chrXV 271314 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.43;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4688,534,0 chrXV 271365 . T A 4973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=4.295;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.364;QD=24.02;ReadPosRankSum=1.682;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4973,535,0 chrXV 271388 . C T 4653.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.03;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4653,513,0 chrXV 271422 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=167;Dels=0.00;FS=4.006;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.419;QD=20.71;ReadPosRankSum=1.711;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3459,396,0 chrXV 271727 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.65;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3045,336,0 chrXV 271758 . T C 2487 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8090;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.06;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2520,297,0 chrXV 271822 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=18.61;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,88:93:99:1764,204,0 chrXV 271895 . G C 1833 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=17.13;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1866,219,0 chrXV 271898 . G T 1738 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=16.40;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1771,195,0 chrXV 271903 . C T 1704 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=15.63;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1737,189,0 chrXV 271912 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=14.57;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1577,177,0 chrXV 271964 . T C 93.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=102.3212;MLEAC=1;MLEAF=0.500;MQ=30.96;MQ0=0;MQRankSum=0.718;QD=0.77;ReadPosRankSum=-7.425;SB=-3.565e+02 GT:AD:DP:GQ:PL 0/1:73,48:121:1:122,0,1 chrXV 271974 . T C 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;DP=131;Dels=0.00;FS=1.879;HaplotypeScore=37.8927;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;MQRankSum=-0.715;QD=7.37;ReadPosRankSum=3.105;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:5,126:131:99:998,101,0 chrXV 271988 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=12.83;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1727,195,0 chrXV 272022 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8622;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=17.41;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3114,354,0 chrXV 272201 . G A 4930.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=20.80;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4930,555,0 chrXV 272231 . T C 4884.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=19.77;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4884,555,0 chrXV 272255 . G C 4053.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=18.17;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4053,465,0 chrXV 272275 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=223;Dels=0.00;FS=10.788;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.689;QD=17.03;ReadPosRankSum=2.960;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:3798,429,0 chrXV 272573 . A G 4457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=219;Dels=0.00;FS=6.585;HaplotypeScore=26.7066;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.679;QD=20.35;ReadPosRankSum=2.347;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:2,213:219:99:4457,527,0 chrXV 272726 . A G 5924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=261;Dels=0.00;FS=3.585;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.269;QD=22.70;ReadPosRankSum=1.652;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:1,257:261:99:5924,669,0 chrXV 273137 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.14;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3155,351,0 chrXV 273233 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.03;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3388,372,0 chrXV 273332 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.42;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4148,453,0 chrXV 273347 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.41;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3858,423,0 chrXV 273461 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4404,477,0 chrXV 273775 . G C 4253.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.81;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4253,477,0 chrXV 273944 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=17.0727;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.84;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3627,405,0 chrXV 274324 . G A 5193.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.3074;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.11;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5193,585,0 chrXV 274354 . A C 5624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=262;Dels=0.00;FS=3.023;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.061;QD=21.47;ReadPosRankSum=2.403;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:2,260:262:99:5624,630,0 chrXV 274550 . T G 4780.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.43;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4780,555,0 chrXV 274565 . A G 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.731;QD=19.56;ReadPosRankSum=1.716;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4127,486,0 chrXV 274962 . C T 5094.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.69;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5094,555,0 chrXV 275073 . T C 5292.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.63;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5292,594,0 chrXV 275191 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.7205;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.33;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3617,405,0 chrXV 275230 . G C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.63;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3785,441,0 chrXV 275863 . A T 6167.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.6254;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.93;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6167,678,0 chrXV 275901 . T C 6585.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=6.0969;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.31;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:6585,756,0 chrXV 275908 . A G 6473.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.55;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:6473,747,0 chrXV 276109 . G A 7008.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.11;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,315:317:99:7008,792,0 chrXV 276471 . A G 2774 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2807,321,0 chrXV 276515 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=127;Dels=0.00;FS=2.661;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.161;QD=22.27;ReadPosRankSum=2.391;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2861,321,0 chrXV 276679 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.648;QD=23.39;ReadPosRankSum=1.709;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3438,393,0 chrXV 276774 . C G 2987 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:3020,342,0 chrXV 277085 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.15;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3449,372,0 chrXV 277291 . T A 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=151;Dels=0.00;FS=3.216;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.204;QD=23.14;ReadPosRankSum=1.709;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3494,390,0 chrXV 277459 . T C 1850 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=22.29;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1883,216,0 chrXV 277461 . G A 1923 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=22.10;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1956,219,0 chrXV 277467 . C G 1846 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=20.29;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1879,213,0 chrXV 277524 . T C 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=7.782;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.866;QD=19.56;ReadPosRankSum=1.650;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1676,186,0 chrXV 277532 . A G 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.615;QD=18.37;ReadPosRankSum=1.693;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1686,198,0 chrXV 277668 . A T 947 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=4.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;MQRankSum=-0.995;QD=20.15;ReadPosRankSum=1.585;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:980,108,0 chrXV 277673 . A G 846 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=18.80;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:879,102,0 chrXV 277675 . C T 883 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=19.20;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:916,105,0 chrXV 277693 . G C 503 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=13.24;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:536,63,0 chrXV 277699 . C T 457 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;QD=12.03;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:57:490,57,0 chrXV 277705 . T C 556 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=13.90;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:589,69,0 chrXV 277772 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.13;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1174,132,0 chrXV 277819 . T A 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.693;QD=23.38;ReadPosRankSum=1.675;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1436,162,0 chrXV 277905 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=87;Dels=0.00;FS=2.588;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.291;QD=18.08;ReadPosRankSum=2.780;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1606,183,0 chrXV 277941 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.13;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2590,285,0 chrXV 278065 . A C 2056 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.77;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2089,243,0 chrXV 278142 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.25;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3759,417,0 chrXV 278259 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.46;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2673,300,0 chrXV 278268 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.48;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2775,309,0 chrXV 278457 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.72;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3117,348,0 chrXV 278544 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.95;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3016,333,0 chrXV 279324 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=148;Dels=0.00;FS=8.124;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.861;QD=22.48;ReadPosRankSum=2.383;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3327,375,0 chrXV 279501 . A G 4470.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.92;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4470,519,0 chrXV 279594 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.39;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4186,486,0 chrXV 279807 . T C 2591 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=20.73;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2624,297,0 chrXV 279819 . G A 2346 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.22;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2379,264,0 chrXV 279839 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.15;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2411,261,0 chrXV 279879 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.84;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2826,306,0 chrXV 279942 . T A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1542;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.48;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3405,381,0 chrXV 279981 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=4.055;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.155;QD=22.73;ReadPosRankSum=1.660;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3318,387,0 chrXV 280005 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.013;QD=22.73;ReadPosRankSum=1.706;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3011,323,0 chrXV 280156 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=9.5977;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.86;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3162,345,0 chrXV 280157 . G T 3044 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.29;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3077,339,0 chrXV 280347 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.23;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3809,438,0 chrXV 280395 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.82;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3023,336,0 chrXV 280401 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.89;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2679,297,0 chrXV 280497 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.17;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3430,387,0 chrXV 280505 . A C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.342;QD=19.83;ReadPosRankSum=1.692;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3431,390,0 chrXV 280524 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.80;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3142,348,0 chrXV 280587 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.09;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2384,276,0 chrXV 280789 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.32;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3228,363,0 chrXV 281328 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.69;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4490,507,0 chrXV 281493 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.99;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4002,450,0 chrXV 281671 . C G 4079.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.03;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4079,474,0 chrXV 281680 . C T 4363.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.15;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4363,480,0 chrXV 281784 . G C 3942.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.19;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3942,438,0 chrXV 281820 . G C 3566.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5827;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.86;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3566,402,0 chrXV 281915 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.04;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:3008,330,0 chrXV 281945 . A C 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=134;Dels=0.00;FS=2.513;HaplotypeScore=6.9566;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.737;QD=21.71;ReadPosRankSum=2.948;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2942,336,0 chrXV 282038 . A G 1915 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.53;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1948,225,0 chrXV 282101 . A G 2277 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.77;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2310,261,0 chrXV 282122 . T C 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.433;QD=19.14;ReadPosRankSum=1.660;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1870,210,0 chrXV 282124 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.41;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1874,207,0 chrXV 282266 . T A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.94;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3327,378,0 chrXV 282628 . A G 4167.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.1226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4167,474,0 chrXV 283276 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2725,312,0 chrXV 283744 . G A 6469.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=13.5462;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.31;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:6469,708,0 chrXV 283801 . G A 5500.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5500,609,0 chrXV 284163 . C T 5055.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5055,570,0 chrXV 284406 . C T 5201.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5201,579,0 chrXV 284521 . A T 5073.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.35;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5073,573,0 chrXV 284754 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.21;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4085,450,0 chrXV 284878 . C G 4919.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4919,558,0 chrXV 284983 . A G 5864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=248;Dels=0.00;FS=12.535;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.695;QD=23.65;ReadPosRankSum=2.915;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:3,244:248:99:5864,660,0 chrXV 285091 . A G 6008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=20.4328;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.544;QD=21.46;ReadPosRankSum=1.657;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:1,276:280:99:6008,702,0 chrXV 285417 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.26;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4235,459,0 chrXV 285611 . A C 2158 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.17;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2191,252,0 chrXV 285613 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.59;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2216,243,0 chrXV 285646 . A T 2414 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.75;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2447,264,0 chrXV 285711 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.03;FS=0.000;HaplotypeScore=88.0852;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=16.05;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1879,210,0 chrXV 285767 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-0.758;QD=20.62;ReadPosRankSum=2.362;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2961,342,0 chrXV 286096 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.01;FS=2.895;HaplotypeScore=8.0625;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.691;QD=19.38;ReadPosRankSum=2.353;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3469,396,0 chrXV 286097 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.327;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=8.0625;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.316;QD=19.54;ReadPosRankSum=-1.376;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3478,379,0 chrXV 286242 . G A 4658.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0758;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4658,510,0 chrXV 286319 . A C 4561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=219;Dels=0.00;FS=6.535;HaplotypeScore=13.7137;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.287;QD=20.83;ReadPosRankSum=2.359;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4561,531,0 chrXV 286370 . T C 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=216;Dels=0.00;FS=6.047;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.201;QD=21.56;ReadPosRankSum=2.949;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4657,528,0 chrXV 286561 . G A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.5910;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.51;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3786,420,0 chrXV 286630 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.69;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4489,492,0 chrXV 287251 . C A 6304.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=17.1988;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.44;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:6304,723,0 chrXV 287299 . C A 6288.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.46;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:6288,720,0 chrXV 287323 . T C 6662.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.06;SB=-3.528e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:6662,765,0 chrXV 287386 . A G 6165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=21.7207;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.650;QD=20.69;ReadPosRankSum=1.709;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:1,295:298:99:6165,717,0 chrXV 287533 . C T 5070.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.3855;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.21;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,234:239:99:5070,573,0 chrXV 288002 . C T 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.9995;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.866;QD=16.43;ReadPosRankSum=1.666;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:99:904,99,0 chrXV 288113 . G A 654 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.69;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:687,78,0 chrXV 288164 . C T 396 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.50;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:429,48,0 chrXV 288175 . C A 537 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=14.51;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:63:570,63,0 chrXV 288307 . G C 1682 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=17.71;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1715,198,0 chrXV 288781 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.97;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2698,294,0 chrXV 288918 . A G 1503 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.03;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1536,183,0 chrXV 289218 . C T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.38;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3740,420,0 chrXV 289503 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.1903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3692,402,0 chrXV 289797 . C A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.06;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3432,384,0 chrXV 289812 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.89;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3363,360,0 chrXV 289997 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=198;Dels=0.00;FS=8.870;HaplotypeScore=21.5881;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.004;QD=21.59;ReadPosRankSum=3.336;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:4,193:198:99:4274,486,0 chrXV 290043 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.8831;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.58;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4316,480,0 chrXV 290223 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.01;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3611,405,0 chrXV 290259 . A G 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=2.613;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-1.462;QD=15.10;ReadPosRankSum=2.425;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:3053,354,0 chrXV 290268 . G C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.8530;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=15.58;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3302,375,0 chrXV 290597 . A G 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.536;QD=16.38;ReadPosRankSum=1.691;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1425,162,0 chrXV 290681 . T C 1954 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.24;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1987,228,0 chrXV 290723 . T A 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.044;DP=79;Dels=0.00;FS=2.909;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.326;QD=20.30;ReadPosRankSum=2.388;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1637,183,0 chrXV 290809 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.79;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3925,426,0 chrXV 290822 . T G 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.391;QD=21.23;ReadPosRankSum=2.422;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3842,432,0 chrXV 290902 . A T 4577.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.12;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4577,495,0 chrXV 290908 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.59;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4296,474,0 chrXV 290923 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.6372;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.63;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3789,435,0 chrXV 291010 . A G 4950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=245;Dels=0.00;FS=5.812;HaplotypeScore=16.6536;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.652;QD=20.20;ReadPosRankSum=2.939;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:4950,582,0 chrXV 291072 . A G 5416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=260;Dels=0.00;FS=5.199;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.575;QD=20.83;ReadPosRankSum=3.394;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:4,255:260:99:5416,621,0 chrXV 291244 . G A 5214.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.38;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5214,573,0 chrXV 291394 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.03;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3554,405,0 chrXV 291466 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.2830;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.86;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3583,405,0 chrXV 291517 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.58;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3244,357,0 chrXV 291607 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=176;Dels=0.00;FS=13.583;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.358;QD=23.20;ReadPosRankSum=2.960;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:3,171:176:99:4083,465,0 chrXV 291799 . C T 6006.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.1506;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.02;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6006,654,0 chrXV 291910 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.198;QD=17.87;ReadPosRankSum=1.696;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3449,405,0 chrXV 292263 . T G 2519 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.12;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2552,285,0 chrXV 292342 . T C 2862 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.71;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2895,330,0 chrXV 292448 . A C 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.142;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.724;QD=23.63;ReadPosRankSum=1.706;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3223,363,0 chrXV 292493 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.63;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3282,369,0 chrXV 292642 . C G 2986 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.88;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3019,357,0 chrXV 292727 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.20;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3665,411,0 chrXV 292744 . A T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.84;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3888,450,0 chrXV 292783 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.78;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3637,408,0 chrXV 292883 . A G 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=3.688;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-0.558;QD=23.18;ReadPosRankSum=1.713;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4196,483,0 chrXV 293011 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.37;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3529,387,0 chrXV 293065 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=160;Dels=0.00;FS=9.990;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.791;QD=19.71;ReadPosRankSum=2.388;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3186,363,0 chrXV 293078 . A T 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.508;QD=20.11;ReadPosRankSum=1.670;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3358,375,0 chrXV 293098 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.69;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3579,402,0 chrXV 293132 . A G 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.1594;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.712;QD=19.45;ReadPosRankSum=1.647;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3203,360,0 chrXV 293200 . T C 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=4.075;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.009;QD=20.21;ReadPosRankSum=1.702;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2377,270,0 chrXV 293361 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.28;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1994,219,0 chrXV 293536 . C G 2771 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.29;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2804,318,0 chrXV 293833 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3408,378,0 chrXV 293942 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3480,384,0 chrXV 294178 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.79;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3101,354,0 chrXV 294323 . C G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.43;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,172:178:99:3636,429,0 chrXV 294330 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.68;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3903,420,0 chrXV 294382 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.85;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2764,318,0 chrXV 294396 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.182;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.201;QD=17.47;ReadPosRankSum=1.678;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2287,261,0 chrXV 294433 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.94;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3670,414,0 chrXV 294529 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=20.18;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3895,453,0 chrXV 294547 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=19.53;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3692,420,0 chrXV 294553 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=19.71;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3568,396,0 chrXV 294636 . A G 2731 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.20;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2764,309,0 chrXV 294658 . C T 2491 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.29;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2524,285,0 chrXV 294683 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.3740;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.40;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2746,309,0 chrXV 294723 . T C 2377 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.64;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2410,273,0 chrXV 294798 . C T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.37;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3251,357,0 chrXV 294840 . A G 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=152;Dels=0.00;FS=6.711;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.180;QD=18.24;ReadPosRankSum=2.417;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:2805,333,0 chrXV 294882 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=18.29;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2649,312,0 chrXV 295077 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.41;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3137,345,0 chrXV 295163 . A G 4720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=202;Dels=0.00;FS=21.614;HaplotypeScore=10.5739;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.586;QD=23.37;ReadPosRankSum=3.408;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:4,197:202:99:4720,540,0 chrXV 295275 . A G 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=179;Dels=0.00;FS=10.918;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-1.399;QD=16.99;ReadPosRankSum=2.893;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3075,351,0 chrXV 295276 . A G 3010 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=17.20;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3043,345,0 chrXV 295566 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.08;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3289,381,0 chrXV 295611 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.48;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3844,426,0 chrXV 296577 . A C 3160 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.94;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3193,360,0 chrXV 296786 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.116;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.263;QD=20.87;ReadPosRankSum=1.704;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2662,312,0 chrXV 296804 . T C 2534 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.94;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2567,291,0 chrXV 296955 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.62;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2981,327,0 chrXV 296973 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.04;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2699,306,0 chrXV 296990 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.71;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2615,300,0 chrXV 297046 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.99;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4175,453,0 chrXV 297107 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.94;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3328,363,0 chrXV 297302 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.55;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2403,270,0 chrXV 297608 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.88;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2916,330,0 chrXV 297818 . A G 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=117;Dels=0.00;FS=2.832;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.986;QD=22.03;ReadPosRankSum=2.365;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2610,300,0 chrXV 297833 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.09;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2781,303,0 chrXV 298026 . A G 2600 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=14.2083;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.41;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2633,309,0 chrXV 298223 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.26;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4052,471,0 chrXV 298234 . A G 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=3.860;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.448;QD=19.70;ReadPosRankSum=1.662;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:3900,447,0 chrXV 298577 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.485;QD=21.12;ReadPosRankSum=1.670;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3591,402,0 chrXV 298731 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=128;Dels=0.00;FS=3.027;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.758;QD=23.16;ReadPosRankSum=2.411;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2998,339,0 chrXV 298766 . T C 2730 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.14;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2763,315,0 chrXV 298844 . G T 2569 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.23;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2602,282,0 chrXV 298850 . T A 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=7.679;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.274;QD=18.98;ReadPosRankSum=2.336;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2501,285,0 chrXV 298949 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.80;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2540,288,0 chrXV 299004 . C A 2437 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.15;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2470,273,0 chrXV 299136 . A G 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.150;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.990;QD=23.69;ReadPosRankSum=1.705;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3018,339,0 chrXV 299169 . C G 2579 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.0883;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.03;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2612,303,0 chrXV 299213 . A G 2232 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.49;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2265,258,0 chrXV 299731 . G T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.8362;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=21.62;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3329,384,0 chrXV 299782 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;QD=20.02;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2536,291,0 chrXV 299792 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=19.48;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2351,276,0 chrXV 299793 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=20.38;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2458,276,0 chrXV 299830 . G A 1745 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.04;FS=0.000;HaplotypeScore=11.4203;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=13.53;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1778,195,0 chrXV 299831 . G A 1737 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.04;FS=0.000;HaplotypeScore=11.4203;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=13.79;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1770,198,0 chrXV 299839 . A G 1917 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.4203;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;MQRankSum=-1.658;QD=13.69;ReadPosRankSum=1.707;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1950,225,0 chrXV 299862 . C A 2277 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=14.79;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2310,255,0 chrXV 299868 . C G 2189 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=13.94;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2222,255,0 chrXV 299885 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=16.49;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2374,258,0 chrXV 299926 . T C 1796 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=13.40;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1829,213,0 chrXV 300109 . A G 1935 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=21.26;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1968,225,0 chrXV 300156 . A C 1689 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=21.65;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1722,198,0 chrXV 300301 . G T 2106 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.40;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2139,234,0 chrXV 300388 . G A 2200 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.18;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2233,255,0 chrXV 300404 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.40;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2089,234,0 chrXV 300495 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.00;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1749,186,0 chrXV 300670 . A G 953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.154;DP=50;Dels=0.00;FS=3.071;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;MQRankSum=-1.857;QD=19.06;ReadPosRankSum=2.352;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:986,111,0 chrXV 300690 . A T 809 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=19.26;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:842,93,0 chrXV 300698 . T C 886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.39;MQ0=0;MQRankSum=-1.039;QD=17.72;ReadPosRankSum=1.525;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:919,105,0 chrXV 300708 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.58;MQ0=0;QD=18.69;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1061,120,0 chrXV 300865 . T C 682 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=21.31;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:715,81,0 chrXV 300887 . C T 582 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;QD=20.07;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:66:615,66,0 chrXV 300895 . T A 619 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=22.11;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:72:652,72,0 chrXV 301044 . G C 880 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=15.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:913,108,0 chrXV 301045 . C T 902 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=16.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:935,108,0 chrXV 301075 . T G 625 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=11.16;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:75:658,75,0 chrXV 301083 . T C 615 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=11.39;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:75:648,75,0 chrXV 301153 . G A 920 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=16.73;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:953,105,0 chrXV 301621 . C G 5040.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=5.7469;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.36;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5040,593,0 chrXV 301631 . T C 5250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=252;Dels=0.00;FS=5.558;HaplotypeScore=7.0666;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.820;QD=20.83;ReadPosRankSum=2.964;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:3,248:251:99:5250,591,0 chrXV 301661 . C T 5348.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.89;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5348,585,0 chrXV 302184 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.758;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.272;QD=22.20;ReadPosRankSum=1.283;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4130,464,0 chrXV 302580 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3651;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.586;QD=19.69;ReadPosRankSum=1.707;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2711,309,0 chrXV 302844 . T C 2937 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.08;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2970,336,0 chrXV 302883 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.37;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2555,288,0 chrXV 303066 . A T 2361 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.46;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2394,261,0 chrXV 303067 . C T 2317 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.87;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2350,267,0 chrXV 303178 . T G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.052;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=78.2031;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=1.316;QD=0.19;ReadPosRankSum=4.260;SB=-8.188e+02 GT:AD:DP:GQ:PL 1/1:8,79:87:6:48,6,0 chrXV 303222 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3553;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.666;QD=17.81;ReadPosRankSum=1.694;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1654,195,0 chrXV 303785 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.29;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3843,435,0 chrXV 303924 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5989;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.28;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3021,345,0 chrXV 303991 . A T 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.4465;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.300;QD=22.15;ReadPosRankSum=1.686;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3323,369,0 chrXV 304204 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1177;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.30;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3612,417,0 chrXV 304242 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.54;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3361,387,0 chrXV 304263 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.802;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.910;QD=20.71;ReadPosRankSum=1.710;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3264,375,0 chrXV 304624 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.95;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:3628,396,0 chrXV 304625 . A C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=15.56;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,212:217:99:3377,393,0 chrXV 304796 . T C 4225.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.9053;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.56;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4225,477,0 chrXV 305374 . T C 2727 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=20.20;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2760,315,0 chrXV 305375 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=20.18;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2757,315,0 chrXV 305394 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.82;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1958,222,0 chrXV 305395 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=17.46;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1936,222,0 chrXV 305531 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.67;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3369,384,0 chrXV 305540 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.73;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3477,378,0 chrXV 305924 . C T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9001;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.70;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3383,372,0 chrXV 305972 . C A 3025 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.41;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3058,345,0 chrXV 306086 . C T 2262 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=23.08;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2295,252,0 chrXV 306087 . C T 2274 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=22.51;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2307,255,0 chrXV 306089 . G A 2192 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.14;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2225,252,0 chrXV 306254 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.43;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3102,345,0 chrXV 306308 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.11;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3047,342,0 chrXV 307008 . T C 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=181;Dels=0.00;FS=10.172;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=2.090;QD=23.82;ReadPosRankSum=2.916;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:4311,486,0 chrXV 307049 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=178;Dels=0.00;FS=2.948;HaplotypeScore=14.5046;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.368;QD=22.83;ReadPosRankSum=2.339;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4064,468,0 chrXV 307840 . A G 2175 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2208,252,0 chrXV 307905 . T A 2844 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.12;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2877,330,0 chrXV 307963 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.99;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3574,393,0 chrXV 307994 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.58;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3364,387,0 chrXV 308120 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.7884;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.85;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2611,291,0 chrXV 308195 . A G 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.015;QD=21.26;ReadPosRankSum=1.702;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2499,291,0 chrXV 308212 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.04;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2942,327,0 chrXV 308420 . A C 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=4.494;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.273;QD=21.68;ReadPosRankSum=1.618;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3296,381,0 chrXV 308439 . T C 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=129;Dels=0.00;FS=2.620;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.295;QD=21.12;ReadPosRankSum=2.412;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2757,315,0 chrXV 308513 . C T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4540,504,0 chrXV 308645 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.09;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3951,432,0 chrXV 308792 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.45;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3154,345,0 chrXV 308903 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.64;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1980,225,0 chrXV 308969 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.28;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1830,201,0 chrXV 308992 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.14;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1868,204,0 chrXV 309144 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=24.27;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1198,135,0 chrXV 309193 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1772,192,0 chrXV 309237 . A G 1190 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1223,141,0 chrXV 309334 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.68;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3431,381,0 chrXV 309869 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.73;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3433,396,0 chrXV 309901 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=151;Dels=0.00;FS=2.330;HaplotypeScore=8.2548;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.380;QD=20.93;ReadPosRankSum=1.380;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3194,360,0 chrXV 310070 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=154;Dels=0.00;FS=3.155;HaplotypeScore=11.7917;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.143;QD=22.22;ReadPosRankSum=1.709;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3422,384,0 chrXV 310257 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.14;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2832,318,0 chrXV 310258 . A G 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.594;QD=19.96;ReadPosRankSum=1.707;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2848,318,0 chrXV 311157 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=21.62;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3308,387,0 chrXV 311417 . A G 5024.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.04;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5024,585,0 chrXV 311808 . T C 5497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.230;QD=23.39;ReadPosRankSum=1.702;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:5497,624,0 chrXV 312065 . A G 5401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=241;Dels=0.00;FS=10.350;HaplotypeScore=16.6943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.795;QD=22.41;ReadPosRankSum=2.937;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:5401,627,0 chrXV 312171 . T C 5516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=242;Dels=0.00;FS=7.408;HaplotypeScore=17.4201;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-2.175;QD=22.79;ReadPosRankSum=2.419;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5516,624,0 chrXV 312393 . A T 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.641;QD=22.52;ReadPosRankSum=1.677;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4278,486,0 chrXV 312454 . A G 4943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=218;Dels=0.00;FS=2.959;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.175;QD=22.67;ReadPosRankSum=2.393;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4943,564,0 chrXV 312534 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=3.190;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.030;QD=22.19;ReadPosRankSum=1.672;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3838,432,0 chrXV 312597 . T C 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;DP=200;Dels=0.00;FS=1.871;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.554;QD=22.57;ReadPosRankSum=3.118;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:5,194:200:99:4514,489,0 chrXV 312684 . G A 4382.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.6183;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.27;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4382,495,0 chrXV 312919 . A G 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.198;QD=21.76;ReadPosRankSum=1.707;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3101,351,0 chrXV 313126 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.97;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1480,168,0 chrXV 313618 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.39;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4000,453,0 chrXV 313924 . T G 2509 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.57;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2542,291,0 chrXV 313945 . T C 2086 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.98;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2119,249,0 chrXV 314041 . A G 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=4.051;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.880;QD=19.16;ReadPosRankSum=1.675;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2371,276,0 chrXV 314050 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=130;Dels=0.00;FS=2.718;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.312;QD=16.75;ReadPosRankSum=2.412;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2210,252,0 chrXV 314073 . G T 2063 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.12;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2096,231,0 chrXV 314395 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0658;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.90;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3636,408,0 chrXV 314514 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.5724;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.94;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2944,321,0 chrXV 314572 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2511,276,0 chrXV 314863 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.04;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3894,444,0 chrXV 315031 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4200,459,0 chrXV 315627 . T A 665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=64;Dels=0.00;FS=6.390;HaplotypeScore=23.3690;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.968;QD=10.39;ReadPosRankSum=1.828;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:7,57:64:84:698,84,0 chrXV 316312 . C A 2523 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.8570;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.83;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2556,282,0 chrXV 316327 . A C 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-1.262;QD=17.75;ReadPosRankSum=1.703;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2128,243,0 chrXV 316342 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.59;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2097,240,0 chrXV 316431 . T A 241.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223;DP=122;Dels=0.00;FS=3.035;HaplotypeScore=286.6973;MLEAC=1;MLEAF=0.500;MQ=37.20;MQ0=0;MQRankSum=-0.635;QD=1.98;ReadPosRankSum=-7.412;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:96,26:122:99:271,0,220 chrXV 316444 . T A 430 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.90;MQ0=0;QD=4.22;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:51:463,51,0 chrXV 316536 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.85;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2866,318,0 chrXV 316574 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.92;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2883,342,0 chrXV 316611 . A G 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=4.293;HaplotypeScore=7.6425;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=1.302;QD=23.27;ReadPosRankSum=1.625;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3035,342,0 chrXV 317246 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8254;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.21;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3620,399,0 chrXV 317298 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.65;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3469,390,0 chrXV 317483 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.88;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2447,285,0 chrXV 317647 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.49;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2512,282,0 chrXV 317789 . A T 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=4.210;HaplotypeScore=3.2775;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.060;QD=22.11;ReadPosRankSum=1.553;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2598,285,0 chrXV 317798 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.34;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2669,288,0 chrXV 318100 . T A 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.755;QD=19.48;ReadPosRankSum=0.098;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3799,417,0 chrXV 318104 . A G 3731.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=18.56;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:3731,429,0 chrXV 318136 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=18.22;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3498,387,0 chrXV 318668 . C G 6949.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=19.3350;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=19.63;SB=-4.233e+03 GT:AD:DP:GQ:PL 1/1:0,350:354:99:6949,789,0 chrXV 319406 . A G 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.361;QD=22.51;ReadPosRankSum=2.424;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4390,501,0 chrXV 319628 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.74;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3214,351,0 chrXV 319664 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.67;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2617,297,0 chrXV 319913 . T C 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.398;QD=21.73;ReadPosRankSum=1.702;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2532,294,0 chrXV 320015 . C G 2410 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2443,279,0 chrXV 320096 . A G 3066 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3099,363,0 chrXV 320395 . C T 4441.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.27;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4441,495,0 chrXV 320437 . G A 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.871;QD=23.84;ReadPosRankSum=1.713;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4339,449,0 chrXV 320489 . A C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=162;Dels=0.00;FS=7.396;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.961;QD=22.65;ReadPosRankSum=2.404;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3670,423,0 chrXV 320726 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.9067;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.37;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4674,519,0 chrXV 320852 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.61;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4069,471,0 chrXV 321148 . A G 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=190;Dels=0.00;FS=2.783;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.666;QD=21.95;ReadPosRankSum=2.398;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4170,477,0 chrXV 321502 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.97;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2486,279,0 chrXV 321655 . C G 2607 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.53;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2640,303,0 chrXV 321663 . T C 2450 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.60;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2483,285,0 chrXV 321742 . T A 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=148;Dels=0.00;FS=2.587;HaplotypeScore=9.0550;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.626;QD=24.22;ReadPosRankSum=2.939;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3585,393,0 chrXV 321775 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.2445;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.96;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4316,492,0 chrXV 321972 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.08;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4090,465,0 chrXV 322108 . C T 4549.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=18.7890;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.09;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4549,489,0 chrXV 322263 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.44;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3161,345,0 chrXV 322691 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.93;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3508,381,0 chrXV 322692 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.80;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3466,381,0 chrXV 322741 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.03;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3344,363,0 chrXV 322819 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.2558;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.10;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3868,438,0 chrXV 322978 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.88;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3511,384,0 chrXV 323017 . T C 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=121;Dels=0.00;FS=2.969;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.876;QD=22.31;ReadPosRankSum=2.409;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2733,309,0 chrXV 323072 . T C 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=145;Dels=0.00;FS=3.039;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.568;QD=20.87;ReadPosRankSum=2.416;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3059,348,0 chrXV 323130 . A G 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.759;QD=20.21;ReadPosRankSum=1.685;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2983,336,0 chrXV 323184 . A G 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.543;QD=18.41;ReadPosRankSum=1.698;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1929,213,0 chrXV 323264 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.32;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1902,213,0 chrXV 323945 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=2.948;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.027;QD=23.26;ReadPosRankSum=2.385;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3536,402,0 chrXV 323974 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=141;Dels=0.00;FS=2.945;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.316;QD=22.74;ReadPosRankSum=2.415;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3239,366,0 chrXV 324175 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.7449;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.77;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3660,420,0 chrXV 324289 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.89;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2091,228,0 chrXV 324302 . T G 1876 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.75;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1909,222,0 chrXV 324367 . G C 2671 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7643;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.94;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2704,312,0 chrXV 325133 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=6.769;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.154;QD=22.17;ReadPosRankSum=2.401;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3392,393,0 chrXV 325159 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.84;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3069,348,0 chrXV 325269 . A C 3285.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.97;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3285,375,0 chrXV 325359 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.53;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3765,429,0 chrXV 325987 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.06;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2414,261,0 chrXV 326265 . G T 1404 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1437,162,0 chrXV 326267 . T C 1443 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.557;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.391;QD=22.20;ReadPosRankSum=3.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,60:65:99:1476,162,0 chrXV 326369 . A G 1281 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=24.17;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1314,153,0 chrXV 326393 . A G 917 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=23.51;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:950,108,0 chrXV 326413 . A G 815 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.37;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:848,96,0 chrXV 326418 . T C 872 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.28;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:905,108,0 chrXV 326554 . T C 1083 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=18.36;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1116,129,0 chrXV 326558 . G A 1077 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.04;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=18.89;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1110,120,0 chrXV 326567 . A C 889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=-2.203;QD=17.78;ReadPosRankSum=2.352;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,48:50:99:922,105,0 chrXV 326583 . T A 755 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=18.41;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:87:788,87,0 chrXV 326619 . A T 85.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=6.56;SB=-2.614e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:118,15,0 chrXV 326630 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=5.62;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:48,6,0 chrXV 326670 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=0.86;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:43,6,0 chrXV 326722 . C T 923 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=17.09;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:956,108,0 chrXV 326915 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.65;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2346,270,0 chrXV 326918 . C G 2424 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.72;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2457,276,0 chrXV 327002 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.18;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3391,372,0 chrXV 327020 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=176;Dels=0.00;FS=2.809;HaplotypeScore=5.4427;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.122;QD=19.24;ReadPosRankSum=2.365;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:3386,381,0 chrXV 327197 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=4.651;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.860;QD=22.95;ReadPosRankSum=1.684;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3305,378,0 chrXV 327275 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.10;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3911,441,0 chrXV 327797 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=137;Dels=0.00;FS=7.598;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.841;QD=19.94;ReadPosRankSum=2.323;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2765,312,0 chrXV 327917 . T C 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=133;Dels=0.00;FS=14.023;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.705;QD=21.08;ReadPosRankSum=2.917;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2837,321,0 chrXV 328029 . A C 2925 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.74;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:2958,345,0 chrXV 328049 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1129;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.93;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3215,363,0 chrXV 328349 . A G 6373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=274;Dels=0.00;FS=2.821;HaplotypeScore=14.8512;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.416;QD=23.26;ReadPosRankSum=2.378;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:2,272:274:99:6373,714,0 chrXV 328457 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=19.60;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4272,468,0 chrXV 328464 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.30;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:3788,429,0 chrXV 328484 . G T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.29;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3731,417,0 chrXV 328747 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.40;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3604,396,0 chrXV 328791 . C A 3106 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.19;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3139,351,0 chrXV 328865 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.05;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1918,225,0 chrXV 329561 . C G 5407.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.01;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,230:235:99:5407,621,0 chrXV 330217 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=160;Dels=0.00;FS=6.160;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.112;QD=21.71;ReadPosRankSum=2.403;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3473,399,0 chrXV 330316 . T C 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=193;Dels=0.00;FS=2.911;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.377;QD=23.05;ReadPosRankSum=2.385;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,188:193:99:4448,510,0 chrXV 330566 . A G 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=227;Dels=0.00;FS=3.629;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.690;QD=21.97;ReadPosRankSum=1.717;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4988,590,0 chrXV 331119 . A T 2400 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5251;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2433,276,0 chrXV 331262 . T C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=4.087;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.929;QD=20.88;ReadPosRankSum=1.648;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1766,207,0 chrXV 331520 . T A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.85;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3777,414,0 chrXV 331655 . T A 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.703;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.638;QD=22.27;ReadPosRankSum=1.677;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4231,477,0 chrXV 331767 . A G 5293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=235;Dels=0.00;FS=2.768;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.970;QD=22.52;ReadPosRankSum=2.429;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:5293,585,0 chrXV 331895 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=177;Dels=0.00;FS=7.343;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.320;QD=22.70;ReadPosRankSum=2.393;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,172:177:99:4018,456,0 chrXV 332096 . A T 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=169;Dels=0.00;FS=3.141;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.072;QD=20.78;ReadPosRankSum=1.712;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3512,393,0 chrXV 332111 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.40;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3467,378,0 chrXV 332235 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.2593;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,156:164:99:3881,420,0 chrXV 332378 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.30;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3751,417,0 chrXV 332899 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=21.63;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1785,204,0 chrXV 332916 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=20.71;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1483,165,0 chrXV 332923 . A G 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.627;QD=19.57;ReadPosRankSum=2.298;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1305,150,0 chrXV 333273 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.42;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2843,321,0 chrXV 333364 . C G 2311 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.01;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2344,267,0 chrXV 333391 . G C 1854 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.92;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1887,216,0 chrXV 333403 . T G 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.982;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.3745;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.296;QD=17.24;ReadPosRankSum=2.308;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1826,210,0 chrXV 333897 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.50;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3972,456,0 chrXV 335382 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.71;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4482,492,0 chrXV 335413 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.74;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3546,396,0 chrXV 335415 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.94;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3601,396,0 chrXV 335976 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3183,360,0 chrXV 336572 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.7586;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.93;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3487,393,0 chrXV 336579 . G C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.50;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3342,393,0 chrXV 336585 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.591;QD=19.90;ReadPosRankSum=1.670;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3323,387,0 chrXV 337063 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.05;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2613,285,0 chrXV 337325 . A G 1985 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2018,225,0 chrXV 337464 . T G 2926 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.18;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2959,336,0 chrXV 337546 . A G 3146 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.1415;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.65;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3179,366,0 chrXV 337635 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.69;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3317,375,0 chrXV 337713 . T G 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=3.401;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.814;QD=21.52;ReadPosRankSum=1.709;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3292,375,0 chrXV 337723 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.65;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3377,366,0 chrXV 337737 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.190;QD=20.19;ReadPosRankSum=1.690;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3331,372,0 chrXV 337772 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.6015;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.08;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3529,384,0 chrXV 338127 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=190;Dels=0.00;FS=2.273;HaplotypeScore=23.5510;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.308;QD=20.47;ReadPosRankSum=3.640;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:5,183:190:99:3890,438,0 chrXV 338175 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.15;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:3974,444,0 chrXV 338259 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.5330;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.45;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3456,384,0 chrXV 338412 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.7066;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.35;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3509,381,0 chrXV 338879 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.72;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4090,444,0 chrXV 339568 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=179;Dels=0.00;FS=2.742;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.926;QD=20.86;ReadPosRankSum=2.422;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3734,420,0 chrXV 339637 . G A 4044.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.7397;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.10;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4044,456,0 chrXV 340281 . T C 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=72.5910;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.847;QD=20.60;ReadPosRankSum=1.617;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1908,219,0 chrXV 340517 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=15.51;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1382,159,0 chrXV 340625 . T C 1639 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1672,189,0 chrXV 340736 . A G 1577 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.77;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1610,183,0 chrXV 340969 . G A 1067 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.78;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1100,120,0 chrXV 341088 . A G 715 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:87:748,87,0 chrXV 341165 . G A 1299 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.30;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1332,147,0 chrXV 341181 . T C 1338 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.58;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1371,153,0 chrXV 342006 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=12.38;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:3392,387,0 chrXV 342160 . T G 7633.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.06;SB=-3.755e+03 GT:AD:DP:GQ:PL 1/1:0,341:346:99:7633,855,0 chrXV 342654 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3285,381,0 chrXV 343217 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.50;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3854,447,0 chrXV 343259 . G C 3492.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.42;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3492,396,0 chrXV 343269 . G T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.86;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3356,381,0 chrXV 343319 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.86;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3943,450,0 chrXV 343727 . A T 5005.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.0065;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.18;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5005,564,0 chrXV 343769 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=21.9175;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=1.428;QD=18.50;ReadPosRankSum=-0.296;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:3810,438,0 chrXV 343770 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=22.7062;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.55;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:3840,435,0 chrXV 343838 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.12;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4688,513,0 chrXV 343932 . G A 5420.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.1956;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.36;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5420,588,0 chrXV 344277 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=178;Dels=0.00;FS=3.026;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.904;QD=21.60;ReadPosRankSum=2.394;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3844,438,0 chrXV 344285 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.96;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3605,396,0 chrXV 344462 . C A 5746.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.42;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5746,624,0 chrXV 344533 . C A 5493.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=21.3829;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.80;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5493,600,0 chrXV 344650 . G A 6569.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=16.8207;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=22.81;SB=-3.704e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:6569,720,0 chrXV 344721 . C T 6413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;DP=286;Dels=0.00;FS=2.963;HaplotypeScore=24.7687;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;MQRankSum=2.398;QD=22.42;ReadPosRankSum=-0.419;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:2,282:286:99:6413,700,0 chrXV 344777 . T C 8741.01 filter AC=2;AF=1.00;AN=2;DP=469;Dels=0.00;FS=0.000;HaplotypeScore=10.9445;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=1;QD=18.64;SB=-4.705e+03 GT:AD:DP:GQ:PL 1/1:0,467:469:99:8741,1016,0 chrXV 344787 . C T 8572.01 filter AC=2;AF=1.00;AN=2;DP=464;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=35.75;MQ0=1;QD=18.47;SB=-4.552e+03 GT:AD:DP:GQ:PL 1/1:0,463:464:99:8572,971,0 chrXV 344813 . T C 6425.01 filter AC=2;AF=1.00;AN=2;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=1;QD=17.00;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,376:378:99:6425,746,0 chrXV 344823 . C T 5656.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=1;QD=16.30;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,345:347:99:5656,653,0 chrXV 344849 . T C 1227 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.1170;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=1;QD=10.86;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,109:113:99:1260,144,0 chrXV 344859 . C T 237.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;DP=54;Dels=0.00;FS=2.401;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.19;MQ0=0;MQRankSum=-3.631;QD=4.39;ReadPosRankSum=-0.614;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:12,42:54:99:267,0,132 chrXV 344865 . T A 111.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;DP=33;Dels=0.00;FS=8.766;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=37.12;MQ0=0;MQRankSum=-3.537;QD=3.36;ReadPosRankSum=3.537;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:12,21:33:99:141,0,170 chrXV 344866 . T C 114.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=39.10;MQ0=0;MQRankSum=-3.572;QD=3.08;ReadPosRankSum=4.277;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:16,21:37:99:144,0,170 chrXV 344892 . C T 465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.268;DP=57;Dels=0.00;FS=5.767;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;MQRankSum=1.304;QD=8.16;ReadPosRankSum=-0.911;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:41:498,41,0 chrXV 344901 . G A 529 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.05;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=8.67;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:66:562,66,0 chrXV 344921 . T C 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=0.477;QD=10.93;ReadPosRankSum=1.682;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:96:787,96,0 chrXV 344949 . T C 757.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.391;DP=175;Dels=0.00;FS=22.206;HaplotypeScore=18.7298;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=1;MQRankSum=0.512;QD=4.33;ReadPosRankSum=9.254;SB=-6.260e+02 GT:AD:DP:GQ:PL 0/1:78,97:175:99:787,0,474 chrXV 344954 . T C 834.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700;DP=185;Dels=0.00;FS=27.485;HaplotypeScore=20.4318;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=1;MQRankSum=1.285;QD=4.51;ReadPosRankSum=6.437;SB=-6.520e+02 GT:AD:DP:GQ:PL 0/1:84,101:185:99:864,0,501 chrXV 344964 . C T 689.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;DP=214;Dels=0.00;FS=32.206;HaplotypeScore=10.9425;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=1;MQRankSum=-0.602;QD=3.22;ReadPosRankSum=-2.776;SB=-4.960e+02 GT:AD:DP:GQ:PL 0/1:102,112:214:99:719,0,714 chrXV 344979 . C T 479.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.233;DP=222;Dels=0.00;FS=48.210;HaplotypeScore=2.3036;MLEAC=1;MLEAF=0.500;MQ=27.00;MQ0=1;MQRankSum=3.608;QD=2.16;ReadPosRankSum=3.031;SB=-1.690e+02 GT:AD:DP:GQ:PL 0/1:150,72:222:99:509,0,1089 chrXV 344980 . T A 472.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201;DP=222;Dels=0.00;FS=48.210;HaplotypeScore=2.3036;MLEAC=1;MLEAF=0.500;MQ=27.00;MQ0=1;MQRankSum=1.480;QD=2.13;ReadPosRankSum=2.122;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:150,72:222:99:502,0,1131 chrXV 344990 . T C 403.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.164;DP=219;Dels=0.00;FS=47.449;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=1;MQRankSum=0.847;QD=1.84;ReadPosRankSum=-3.823;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:151,68:219:99:433,0,1139 chrXV 344992 . G A 405.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;DP=219;Dels=0.00;FS=47.449;HaplotypeScore=1.7206;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=1;MQRankSum=3.608;QD=1.85;ReadPosRankSum=-4.530;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:151,68:219:99:435,0,1105 chrXV 344993 . T C 2005 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=221;Dels=0.00;FS=6.201;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=1;MQRankSum=1.021;QD=9.07;ReadPosRankSum=2.427;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:2038,245,0 chrXV 345003 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.3149;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=1;QD=9.20;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:2167,258,0 chrXV 345015 . C T 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.027;DP=236;Dels=0.00;FS=38.774;HaplotypeScore=5.1610;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=1;MQRankSum=2.748;QD=0.61;ReadPosRankSum=-5.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,46:236:99:173,0,1436 chrXV 345018 . A G 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.961;DP=229;Dels=0.00;FS=34.841;HaplotypeScore=4.5296;MLEAC=1;MLEAF=0.500;MQ=26.77;MQ0=1;MQRankSum=1.375;QD=0.32;ReadPosRankSum=-4.352;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,38:229:99:104,0,1430 chrXV 345029 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.4653;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=1;MQRankSum=-0.828;QD=9.68;ReadPosRankSum=1.713;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:1785,216,0 chrXV 345039 . C T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.974;DP=133;Dels=0.03;FS=0.923;HaplotypeScore=26.0478;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=0;MQRankSum=1.346;QD=0.30;ReadPosRankSum=-5.838;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,19:129:70:70,0,845 chrXV 345057 . T C 426.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.159;DP=113;Dels=0.00;FS=9.690;HaplotypeScore=7.9768;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=0;MQRankSum=0.441;QD=3.77;ReadPosRankSum=1.486;SB=-5.630e+02 GT:AD:DP:GQ:PL 0/1:38,75:113:99:456,0,131 chrXV 345062 . T C 580 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.2896;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=0;MQRankSum=1.819;QD=5.80;ReadPosRankSum=2.277;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:5,95:100:40:613,40,0 chrXV 345064 . G A 128.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;DP=100;Dels=0.00;FS=10.479;HaplotypeScore=8.8202;MLEAC=1;MLEAF=0.500;MQ=26.15;MQ0=0;MQRankSum=1.551;QD=1.28;ReadPosRankSum=-0.061;SB=-1.380e+02 GT:AD:DP:GQ:PL 0/1:59,40:100:99:158,0,328 chrXV 345072 . C T 360.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;DP=108;Dels=0.00;FS=3.756;HaplotypeScore=8.9951;MLEAC=1;MLEAF=0.500;MQ=26.22;MQ0=0;MQRankSum=1.835;QD=3.33;ReadPosRankSum=1.723;SB=-3.870e+02 GT:AD:DP:GQ:PL 0/1:44,64:108:99:390,0,257 chrXV 345087 . C T 619 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=104;Dels=0.00;FS=13.342;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;MQRankSum=1.787;QD=5.95;ReadPosRankSum=-1.301;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:44:652,44,0 chrXV 345088 . T A 57.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;DP=106;Dels=0.00;FS=6.096;HaplotypeScore=8.7606;MLEAC=1;MLEAF=0.500;MQ=26.17;MQ0=0;MQRankSum=-1.734;QD=0.54;ReadPosRankSum=-5.239;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:81,25:106:87:87,0,489 chrXV 345090 . A G 448.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.478;DP=106;Dels=0.00;FS=11.681;HaplotypeScore=12.6473;MLEAC=1;MLEAF=0.500;MQ=26.17;MQ0=0;MQRankSum=2.411;QD=4.23;ReadPosRankSum=5.786;SB=-4.560e+02 GT:AD:DP:GQ:PL 0/1:28,78:106:99:478,0,119 chrXV 345097 . G A 534.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.662;DP=112;Dels=0.00;FS=12.761;HaplotypeScore=14.6233;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=2.911;QD=4.77;ReadPosRankSum=5.612;SB=-5.050e+02 GT:AD:DP:GQ:PL 0/1:24,88:112:66:564,0,66 chrXV 345100 . G T 587 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=95;Dels=0.01;FS=14.614;HaplotypeScore=10.7298;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;MQRankSum=2.180;QD=6.18;ReadPosRankSum=-1.304;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:3,87:94:38:620,38,0 chrXV 345101 . T C 629 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.988;DP=96;Dels=0.00;FS=2.589;HaplotypeScore=14.4248;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;MQRankSum=-0.500;QD=6.55;ReadPosRankSum=1.808;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:78:662,78,0 chrXV 345108 . T C 680 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.412;DP=108;Dels=0.00;FS=4.472;HaplotypeScore=292.0448;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;MQRankSum=0.439;QD=6.30;ReadPosRankSum=2.164;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:5,103:108:84:713,84,0 chrXV 345111 . C T 629 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=107;Dels=0.02;FS=4.414;HaplotypeScore=206.8085;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;MQRankSum=1.105;QD=5.88;ReadPosRankSum=-1.105;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:78:662,78,0 chrXV 345183 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=15.44;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3182,360,0 chrXV 345249 . C T 4849.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=20.63;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4849,537,0 chrXV 345394 . A G 4741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=251;Dels=0.00;FS=7.233;HaplotypeScore=18.6530;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=2.106;QD=18.89;ReadPosRankSum=2.430;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:2,248:251:99:4741,558,0 chrXV 345603 . T C 6854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=12.1084;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.648;QD=21.97;ReadPosRankSum=1.587;SB=-3.489e+03 GT:AD:DP:GQ:PL 1/1:1,309:312:99:6854,798,0 chrXV 345678 . C T 4779.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.72;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4779,531,0 chrXV 345964 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.37;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2697,306,0 chrXV 346194 . A G 4722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=204;Dels=0.00;FS=25.507;HaplotypeScore=27.2725;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.373;QD=23.15;ReadPosRankSum=3.381;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:4,195:204:99:4722,534,0 chrXV 346416 . T C 3684.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=17.97;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:3684,435,0 chrXV 346486 . A G 106.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.562;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=48.1176;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=0;MQRankSum=1.539;QD=1.06;ReadPosRankSum=0.278;SB=-2.860e+02 GT:AD:DP:GQ:PL 0/1:57,43:100:99:136,0,360 chrXV 346492 . G A 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.257;DP=129;Dels=0.00;FS=3.539;HaplotypeScore=38.7017;MLEAC=1;MLEAF=0.500;MQ=30.68;MQ0=0;MQRankSum=5.466;QD=0.29;ReadPosRankSum=2.602;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:110,19:129:67:67,0,723 chrXV 346495 . G A 713.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.277;DP=134;Dels=0.00;FS=0.740;HaplotypeScore=57.2929;MLEAC=1;MLEAF=0.500;MQ=30.62;MQ0=0;MQRankSum=-0.748;QD=5.32;ReadPosRankSum=3.167;SB=-6.390e+02 GT:AD:DP:GQ:PL 0/1:38,96:134:89:743,0,89 chrXV 346498 . A G 223.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.689;DP=151;Dels=0.00;FS=2.188;HaplotypeScore=38.6895;MLEAC=1;MLEAF=0.500;MQ=31.03;MQ0=0;MQRankSum=1.150;QD=1.48;ReadPosRankSum=-2.111;SB=-3.460e+02 GT:AD:DP:GQ:PL 0/1:94,57:151:99:253,0,685 chrXV 346504 . A G 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=19.8152;MLEAC=1;MLEAF=0.500;MQ=32.21;MQ0=0;MQRankSum=-2.734;QD=0.08;ReadPosRankSum=2.009;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:138,40:178:44:44,0,1125 chrXV 346509 . C T 1167.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.594;DP=182;Dels=0.00;FS=1.412;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=32.14;MQ0=0;MQRankSum=0.128;QD=6.41;ReadPosRankSum=-2.041;SB=-1.386e+03 GT:AD:DP:GQ:PL 0/1:41,141:182:68:1197,0,68 chrXV 346510 . T C 50.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940;DP=183;Dels=0.00;FS=0.668;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=32.13;MQ0=0;MQRankSum=-3.409;QD=0.27;ReadPosRankSum=2.100;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:142,41:183:80:80,0,1203 chrXV 346525 . G A 1422.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;DP=208;Dels=0.00;FS=2.095;HaplotypeScore=5.5485;MLEAC=1;MLEAF=0.500;MQ=34.48;MQ0=0;MQRankSum=0.306;QD=6.84;ReadPosRankSum=-2.617;SB=-1.625e+03 GT:AD:DP:GQ:PL 0/1:47,161:208:11:1452,0,11 chrXV 346528 . G A 1968 SnpCluster AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.5830;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;QD=9.20;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:2001,219,0 chrXV 346531 . A G 1499.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.691;DP=213;Dels=0.00;FS=3.121;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;MQRankSum=0.570;QD=7.04;ReadPosRankSum=-4.927;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:41,171:213:9:1532,9,0 chrXV 346558 . A G 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.543;DP=295;Dels=0.00;FS=8.262;HaplotypeScore=16.4249;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;MQRankSum=1.726;QD=10.36;ReadPosRankSum=4.902;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:46,249:295:99:3088,165,0 chrXV 346738 . G A 5574.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=23.23;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5574,633,0 chrXV 347003 . G T 4785.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.81;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4785,540,0 chrXV 347031 . A G 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.411;DP=180;Dels=0.00;FS=12.189;HaplotypeScore=1.9748;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-0.209;QD=19.11;ReadPosRankSum=3.382;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:3439,390,0 chrXV 347033 . A T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=19.52;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3475,387,0 chrXV 347064 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=0.105;QD=15.80;ReadPosRankSum=1.680;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3162,360,0 chrXV 347095 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=223;Dels=0.00;FS=3.069;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-0.350;QD=15.14;ReadPosRankSum=1.717;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:3377,381,0 chrXV 347099 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;MQRankSum=-1.276;QD=14.92;ReadPosRankSum=1.671;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:3401,384,0 chrXV 347117 . T A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.38;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4068,447,0 chrXV 347268 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=23.78;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3829,417,0 chrXV 347351 . G A 3827.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.26;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3827,420,0 chrXV 347678 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.323;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2119;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.302;QD=22.69;ReadPosRankSum=0.251;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3336,351,0 chrXV 347758 . T C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;DP=121;Dels=0.00;FS=8.896;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;MQRankSum=-0.504;QD=20.96;ReadPosRankSum=3.341;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:4,116:121:99:2569,286,0 chrXV 347788 . T C 2333 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=19.28;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2366,279,0 chrXV 347793 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=117;Dels=0.00;FS=3.032;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=-1.020;QD=19.52;ReadPosRankSum=2.366;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2317,270,0 chrXV 347823 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.75;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2585,291,0 chrXV 347918 . T C 2325 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=18.60;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2358,270,0 chrXV 347922 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=18.75;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2358,255,0 chrXV 347930 . G A 2020 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=17.41;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2053,228,0 chrXV 347970 . T C 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;MQRankSum=-0.866;QD=13.94;ReadPosRankSum=-0.307;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1761,204,0 chrXV 348024 . C A 1718 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=16.36;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1751,192,0 chrXV 348098 . T C 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=12.5943;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.935;QD=19.27;ReadPosRankSum=1.701;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2249,258,0 chrXV 348099 . A G 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=7.186;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.074;QD=18.94;ReadPosRankSum=2.407;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2249,261,0 chrXV 348149 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=20.32;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2451,279,0 chrXV 348182 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=1.187;QD=24.22;ReadPosRankSum=1.700;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2649,297,0 chrXV 348257 . G C 2923 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.38;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2956,330,0 chrXV 348325 . G A 2690 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=22.99;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2723,300,0 chrXV 348346 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=22.46;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2301,255,0 chrXV 348459 . T C 2666 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=14.2669;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.79;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2699,315,0 chrXV 348546 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=19.16;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2121,234,0 chrXV 348559 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.96;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2109,240,0 chrXV 348670 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.450;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=1.065;QD=20.10;ReadPosRankSum=1.706;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2747,327,0 chrXV 348695 . A G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=162;Dels=0.00;FS=7.731;HaplotypeScore=14.7203;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-0.791;QD=18.17;ReadPosRankSum=2.419;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:2977,351,0 chrXV 348744 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.1494;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.39;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4363,513,0 chrXV 348769 . A G 4926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=234;Dels=0.00;FS=5.661;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.657;QD=21.05;ReadPosRankSum=1.717;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:4926,575,0 chrXV 348888 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.13;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3266,372,0 chrXV 348896 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.67;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3417,399,0 chrXV 348935 . G A 5324.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.73;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5324,576,0 chrXV 348968 . A G 5533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.580;QD=21.45;ReadPosRankSum=2.392;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:2,254:258:99:5533,627,0 chrXV 349130 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.75;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4436,492,0 chrXV 349164 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=176;Dels=0.00;FS=2.989;HaplotypeScore=19.0169;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.230;QD=23.07;ReadPosRankSum=2.422;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4060,462,0 chrXV 349515 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.04;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4147,456,0 chrXV 349564 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.08;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2818,324,0 chrXV 349987 . A C 3082 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.2941;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.71;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3115,354,0 chrXV 350020 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.680;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.055;QD=23.37;ReadPosRankSum=1.705;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3001,339,0 chrXV 350170 . A G 2558 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.80;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2591,297,0 chrXV 350302 . C G 3087 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3120,354,0 chrXV 350368 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.31;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2420,264,0 chrXV 350618 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.32;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2202,243,0 chrXV 350863 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.75;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3278,375,0 chrXV 350884 . C G 2959 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.1821;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.34;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2992,348,0 chrXV 351333 . A G 8366.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=13.3633;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.17;SB=-3.862e+03 GT:AD:DP:GQ:PL 1/1:1,358:361:99:8366,948,0 chrXV 351470 . A G 5994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=288;Dels=0.00;FS=5.587;HaplotypeScore=17.7045;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.495;QD=20.81;ReadPosRankSum=2.905;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:3,283:288:99:5994,704,0 chrXV 351541 . C T 6578.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=17.2567;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.22;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:6578,715,0 chrXV 351607 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=27.7142;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=19.53;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,243:248:99:4844,549,0 chrXV 351787 . C T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.70;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4219,462,0 chrXV 351835 . T C 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=219;Dels=0.00;FS=6.753;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.628;QD=21.26;ReadPosRankSum=2.404;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4655,528,0 chrXV 351979 . T C 4383.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.1517;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.97;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4383,501,0 chrXV 352012 . C T 4705.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.7149;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.76;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4705,525,0 chrXV 352138 . G A 4551.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.10;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4551,507,0 chrXV 352180 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.5685;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.32;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4308,489,0 chrXV 352336 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.53;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3256,375,0 chrXV 352378 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.12;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3031,330,0 chrXV 352379 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.32;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3000,327,0 chrXV 352414 . T C 2875 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=18.79;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2908,339,0 chrXV 352665 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.43;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3636,414,0 chrXV 352702 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=1.074;QD=17.58;ReadPosRankSum=1.674;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3215,369,0 chrXV 352710 . C T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.88;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3251,357,0 chrXV 352775 . A G 2965 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.75;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2998,342,0 chrXV 352951 . C T 4757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=1.250;QD=23.55;ReadPosRankSum=1.318;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4757,525,0 chrXV 352987 . T C 4360.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.13;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4360,495,0 chrXV 353194 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=193;Dels=0.00;FS=10.722;HaplotypeScore=9.7178;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.280;QD=21.03;ReadPosRankSum=2.942;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:3,187:193:99:4059,465,0 chrXV 353226 . C G 4609.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.9243;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.64;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4609,519,0 chrXV 353318 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.09;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3667,399,0 chrXV 353449 . G A 5162.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.4698;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.82;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5162,564,0 chrXV 353482 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=213;Dels=0.00;FS=2.983;HaplotypeScore=11.6497;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.158;QD=21.89;ReadPosRankSum=2.216;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:2,208:213:99:4662,540,0 chrXV 353503 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.81;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4645,513,0 chrXV 353527 . G T 4245.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.2079;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.81;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4245,474,0 chrXV 353620 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.55;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4014,441,0 chrXV 353686 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.11;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3610,411,0 chrXV 353702 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.93;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3261,360,0 chrXV 353825 . G A 1930 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.69;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1963,222,0 chrXV 353934 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=24.16;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1700,189,0 chrXV 353946 . T A 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;DP=75;Dels=0.00;FS=2.669;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;MQRankSum=-0.608;QD=22.61;ReadPosRankSum=2.384;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1729,195,0 chrXV 354032 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=69.2309;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=21.47;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1729,195,0 chrXV 354120 . C T 2201 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=25.89;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2234,243,0 chrXV 354122 . G A 2134 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=24.81;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2167,243,0 chrXV 354128 . T A 1941 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=21.33;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1974,228,0 chrXV 354151 . C A 1596 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=20.73;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1629,183,0 chrXV 354162 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=18.68;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1397,162,0 chrXV 354173 . C T 1193 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=16.34;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1226,135,0 chrXV 354222 . C G 998 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;QD=12.79;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1031,117,0 chrXV 354230 . C G 846 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=11.28;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:879,102,0 chrXV 354233 . A G 712 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;MQRankSum=-2.374;QD=10.95;ReadPosRankSum=2.374;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:87:745,87,0 chrXV 354234 . T A 762 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=12.10;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:90:795,90,0 chrXV 354266 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=13.06;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1143,129,0 chrXV 354274 . C T 1016 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=12.70;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1049,117,0 chrXV 354288 . A G 971 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=12.29;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1004,117,0 chrXV 354465 . A G 720 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=22.50;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:753,87,0 chrXV 354481 . G T 454 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.63;MQ0=0;QD=19.74;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:57:487,57,0 chrXV 354510 . T C 316 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=19.75;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:349,42,0 chrXV 354554 . G C 352 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=18.53;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:45:385,45,0 chrXV 354611 . C A 318 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=4.97;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:42:351,42,0 chrXV 354629 . T C 406 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;QD=6.88;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:51:439,51,0 chrXV 354652 . A T 561 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;QD=10.20;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:66:594,66,0 chrXV 354657 . T C 527 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;MQRankSum=-0.472;QD=9.58;ReadPosRankSum=1.669;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:66:560,66,0 chrXV 354681 . C A 377 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.47;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:410,45,0 chrXV 354682 . T A 379 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.53;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:412,45,0 chrXV 354683 . A G 365 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.14;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:398,45,0 chrXV 354688 . A G 369 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.46;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:45:402,45,0 chrXV 354691 . A T 374 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.59;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:45:407,45,0 chrXV 354739 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=17.92;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:983,111,0 chrXV 354740 . G C 987 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;QD=17.95;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1020,117,0 chrXV 354754 . A G 1089 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=53.4185;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=18.46;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1122,129,0 chrXV 354846 . A T 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.2651;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;MQRankSum=0.917;QD=20.38;ReadPosRankSum=1.681;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1419,165,0 chrXV 354852 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;MQRankSum=-0.892;QD=22.05;ReadPosRankSum=1.627;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1488,168,0 chrXV 355047 . A G 224 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.67;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:257,30,0 chrXV 355154 . T C 818 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.096;QD=22.72;ReadPosRankSum=1.636;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:99:851,99,0 chrXV 355189 . A G 1123 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1156,135,0 chrXV 355196 . G A 1246 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1279,135,0 chrXV 355477 . A G 2906 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.44;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2939,342,0 chrXV 355843 . T G 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.719;QD=22.15;ReadPosRankSum=1.705;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2934,336,0 chrXV 356119 . T G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=86;Dels=0.00;FS=5.677;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.488;QD=20.90;ReadPosRankSum=1.691;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1830,207,0 chrXV 356152 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.20;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1796,201,0 chrXV 356505 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.78;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3519,384,0 chrXV 356557 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.89;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3559,396,0 chrXV 356936 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.38;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4447,516,0 chrXV 357029 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.60;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3196,354,0 chrXV 357107 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.452;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.331;QD=20.49;ReadPosRankSum=1.706;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2738,306,0 chrXV 357155 . G A 2056 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8089;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.062;QD=18.36;ReadPosRankSum=1.083;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2089,234,0 chrXV 357161 . G A 1816 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=114;Dels=0.00;FS=2.552;HaplotypeScore=5.4454;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.726;QD=15.93;ReadPosRankSum=2.602;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:1849,191,0 chrXV 357164 . A G 1795 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=118;Dels=0.02;FS=2.672;HaplotypeScore=5.2725;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.183;QD=15.21;ReadPosRankSum=2.299;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:1828,213,0 chrXV 357261 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.19;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2214,252,0 chrXV 357276 . A G 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=117;Dels=0.00;FS=7.537;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.965;QD=18.62;ReadPosRankSum=2.386;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2211,261,0 chrXV 357367 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.49;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2102,237,0 chrXV 357554 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.95;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2397,276,0 chrXV 357991 . T C 5115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=3.126;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.018;QD=22.34;ReadPosRankSum=1.686;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5115,585,0 chrXV 358738 . T A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3896,438,0 chrXV 358915 . A G 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=147;Dels=0.00;FS=5.233;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.720;QD=21.07;ReadPosRankSum=3.399;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:3131,354,0 chrXV 359878 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.71;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4458,501,0 chrXV 360593 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=173;Dels=0.00;FS=4.018;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.728;QD=23.07;ReadPosRankSum=1.712;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,168:173:99:3991,456,0 chrXV 360812 . C T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=21.3362;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.21;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4731,531,0 chrXV 360995 . T A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.59;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3963,438,0 chrXV 361461 . C A 2903 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2936,327,0 chrXV 361539 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.94;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2357,261,0 chrXV 361558 . A T 2578 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.98;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2611,291,0 chrXV 361615 . C T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.22;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3926,450,0 chrXV 361759 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.25;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3638,396,0 chrXV 362851 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.32;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3371,381,0 chrXV 363553 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=161;Dels=0.00;FS=5.513;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.181;QD=21.89;ReadPosRankSum=2.919;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3525,405,0 chrXV 363824 . G T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3380,366,0 chrXV 363974 . C A 2183 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1978;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.05;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2216,243,0 chrXV 364095 . A G 2047 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.66;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2080,231,0 chrXV 364302 . T A 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.386;QD=22.32;ReadPosRankSum=1.646;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1819,198,0 chrXV 364325 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.39;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2003,225,0 chrXV 364437 . C A 2417 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2450,264,0 chrXV 365208 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3707,405,0 chrXV 365792 . T C 4725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=233;Dels=0.00;FS=5.694;HaplotypeScore=15.1479;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.013;QD=20.28;ReadPosRankSum=2.908;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:3,227:233:99:4725,537,0 chrXV 365859 . A T 5157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=248;Dels=0.00;FS=5.640;HaplotypeScore=16.6556;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.073;QD=20.79;ReadPosRankSum=2.956;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:3,245:248:99:5157,570,0 chrXV 365917 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.1375;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.40;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4732,525,0 chrXV 366186 . A G 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.631;QD=22.71;ReadPosRankSum=1.709;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3474,402,0 chrXV 366495 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.295;QD=22.40;ReadPosRankSum=1.673;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3965,453,0 chrXV 366567 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.23;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4111,471,0 chrXV 366618 . C T 5638.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.89;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5638,636,0 chrXV 366780 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4447,480,0 chrXV 366884 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.80;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3260,351,0 chrXV 367057 . T G 1863 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1896,216,0 chrXV 367176 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=18.4636;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=19.77;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1654,183,0 chrXV 367187 . T G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.5728;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.242;QD=17.31;ReadPosRankSum=1.692;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1539,183,0 chrXV 367217 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.98;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2005,225,0 chrXV 367258 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.9567;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.92;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2230,255,0 chrXV 367292 . T C 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.302;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.3236;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.243;QD=20.02;ReadPosRankSum=1.846;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2075,219,0 chrXV 367334 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.21;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2632,297,0 chrXV 367410 . T C 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=8.176;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.912;QD=22.02;ReadPosRankSum=2.362;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2521,288,0 chrXV 367673 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.60;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2209,252,0 chrXV 367677 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.01;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2238,252,0 chrXV 367742 . G A 2542 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.17;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2575,291,0 chrXV 367959 . A T 2839 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.08;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2872,312,0 chrXV 368004 . G T 3165 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.96;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3198,363,0 chrXV 368025 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.201;DP=136;Dels=0.00;FS=8.196;HaplotypeScore=4.4693;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.552;QD=20.26;ReadPosRankSum=3.317;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2788,309,0 chrXV 368066 . C T 99.26 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=80.1694;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=1.01;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:15:132,15,0 chrXV 368375 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.22;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4318,471,0 chrXV 368869 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.44;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3300,372,0 chrXV 368964 . A C 3349.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.48;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3349,378,0 chrXV 369074 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.11;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2637,288,0 chrXV 369165 . C T 2241 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.59;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2274,258,0 chrXV 369227 . A C 2402 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.78;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2435,276,0 chrXV 369285 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2779,312,0 chrXV 369329 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3499;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3377,381,0 chrXV 369380 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.47;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3380,387,0 chrXV 369488 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.17;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3175,342,0 chrXV 369723 . T C 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=3.039;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.510;QD=22.96;ReadPosRankSum=2.410;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2857,318,0 chrXV 369757 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.770;QD=22.43;ReadPosRankSum=1.700;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2478,282,0 chrXV 369905 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.52;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3410,393,0 chrXV 370133 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.29;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2804,324,0 chrXV 370186 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.77;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2651,291,0 chrXV 370226 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.51;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3089,348,0 chrXV 370360 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.3489;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=22.30;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2040,231,0 chrXV 371158 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.667;QD=24.48;ReadPosRankSum=1.667;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3892,441,0 chrXV 371543 . G C 2317 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.4931;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=20.69;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,107:112:99:2350,270,0 chrXV 371632 . G C 2769 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,121:126:99:2802,327,0 chrXV 371824 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.99;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2838,309,0 chrXV 372022 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3880;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.70;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2311,249,0 chrXV 372134 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=68.6534;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.28;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1903,213,0 chrXV 372211 . T C 2424 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.03;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2457,276,0 chrXV 372266 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.00;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1818,195,0 chrXV 372460 . T C 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;DP=47;Dels=0.00;FS=3.711;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.585;QD=17.38;ReadPosRankSum=1.659;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:850,99,0 chrXV 372610 . G C 2142 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.80;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2175,252,0 chrXV 372689 . T C 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=133;Dels=0.00;FS=2.539;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.720;QD=23.36;ReadPosRankSum=2.947;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3140,363,0 chrXV 372828 . A T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.02;FS=0.000;HaplotypeScore=12.0538;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.56;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3579,396,0 chrXV 373468 . G T 2704 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.7669;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.48;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2737,300,0 chrXV 373492 . T C 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=132;Dels=0.00;FS=3.042;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.492;QD=18.15;ReadPosRankSum=2.375;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2429,282,0 chrXV 373539 . A G 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.385;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.055;QD=20.49;ReadPosRankSum=1.680;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2758,312,0 chrXV 373552 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.340;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.084;QD=20.52;ReadPosRankSum=1.704;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2577,294,0 chrXV 373586 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.37;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2435,273,0 chrXV 373701 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.94;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2381,267,0 chrXV 374373 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.55;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2977,327,0 chrXV 374442 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.9269;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.876;QD=24.35;ReadPosRankSum=2.909;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:3,119:123:99:3028,342,0 chrXV 374598 . C G 2680 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.85;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2713,309,0 chrXV 374613 . C T 2839 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.57;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2872,315,0 chrXV 374669 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.68;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2827,315,0 chrXV 374709 . G T 2873 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.9841;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.44;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2906,327,0 chrXV 374751 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.22;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3483,390,0 chrXV 374763 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.91;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3550,405,0 chrXV 374879 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.80;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2932,321,0 chrXV 375158 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.1062;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.093;QD=20.21;ReadPosRankSum=1.693;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3618,408,0 chrXV 375315 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=23.6361;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.32;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3773,429,0 chrXV 375648 . C T 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=-1.615;QD=20.77;ReadPosRankSum=1.644;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4922,537,0 chrXV 375649 . T C 4646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=-0.484;QD=19.60;ReadPosRankSum=2.398;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:2,234:237:99:4646,537,0 chrXV 375713 . G T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=16.37;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3388,375,0 chrXV 375717 . A T 3167 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=15.52;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3200,354,0 chrXV 375730 . G C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.73;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3396,396,0 chrXV 375777 . T A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.6576;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.31;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3388,369,0 chrXV 375812 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=4.075;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.828;QD=21.40;ReadPosRankSum=1.668;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3446,393,0 chrXV 375910 . T A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=23.52;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3622,396,0 chrXV 376252 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.4789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2758,312,0 chrXV 376347 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.5847;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.43;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2365,255,0 chrXV 376576 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.32;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2528,279,0 chrXV 376957 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.3368;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.53;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4142,456,0 chrXV 377032 . T C 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=156;Dels=0.00;FS=12.112;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.125;QD=19.63;ReadPosRankSum=2.862;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:3,150:156:99:3096,363,0 chrXV 377037 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.13;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2998,333,0 chrXV 377174 . C G 5067.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.35;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5067,582,0 chrXV 377281 . G A 3963.01 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.86;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3963,435,0 chrXV 377284 . A G 3806.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=199;Dels=0.01;FS=6.983;HaplotypeScore=3.0675;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.207;QD=19.13;ReadPosRankSum=2.262;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:3806,435,0 chrXV 377291 . C T 3799.01 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.99;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3799,414,0 chrXV 377404 . G A 5533.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.5254;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.77;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5533,612,0 chrXV 377548 . G A 5410.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=20.9196;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.62;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5410,618,0 chrXV 377605 . C T 5657.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.4130;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.67;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5657,624,0 chrXV 377656 . G A 5521.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=21.9189;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.00;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5521,606,0 chrXV 377730 . C T 6282.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.7539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:6282,696,0 chrXV 377924 . T C 5710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=277;Dels=0.00;FS=3.042;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.816;QD=20.61;ReadPosRankSum=1.682;SB=-3.456e+03 GT:AD:DP:GQ:PL 1/1:1,275:277:99:5710,654,0 chrXV 378043 . T A 5026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=237;Dels=0.00;FS=5.948;HaplotypeScore=16.7617;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.600;QD=21.21;ReadPosRankSum=1.717;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5026,552,0 chrXV 378090 . G A 4993.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=20.7047;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.71;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4993,561,0 chrXV 378122 . C G 4253.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.3877;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.25;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4253,480,0 chrXV 378126 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=218;Dels=0.00;FS=3.700;HaplotypeScore=6.5209;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.318;QD=19.09;ReadPosRankSum=1.716;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4162,471,0 chrXV 378233 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=23.0427;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.62;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,180:202:99:3761,432,0 chrXV 378285 . T C 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=20.4574;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.293;QD=20.54;ReadPosRankSum=1.701;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4581,519,0 chrXV 378723 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.689;QD=21.90;ReadPosRankSum=1.653;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3877,447,0 chrXV 378827 . C T 4364.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.73;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4364,480,0 chrXV 378890 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.40;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3539,399,0 chrXV 379161 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.53;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3007,330,0 chrXV 379178 . T C 2616 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.82;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2649,303,0 chrXV 379232 . A C 2972 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.08;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3005,342,0 chrXV 379289 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=137;Dels=0.00;FS=2.958;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.032;QD=21.26;ReadPosRankSum=2.414;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2946,336,0 chrXV 379310 . G T 2568 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.40;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2601,300,0 chrXV 379448 . T C 2443 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.19;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2476,282,0 chrXV 379461 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.24;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2300,249,0 chrXV 379502 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.86;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2377,258,0 chrXV 379747 . G C 3008 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0288;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.49;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3041,348,0 chrXV 379841 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=17.72;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3028,336,0 chrXV 379848 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.839;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.425;QD=17.67;ReadPosRankSum=1.649;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3001,336,0 chrXV 379879 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.9122;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.15;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3394,366,0 chrXV 379978 . C T 5102.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.09;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5102,570,0 chrXV 380023 . T C 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=206;Dels=0.00;FS=3.031;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.066;QD=23.08;ReadPosRankSum=2.389;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4754,537,0 chrXV 380192 . G C 4344.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.39;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4344,489,0 chrXV 380309 . C A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=16.95;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3339,372,0 chrXV 380446 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=179;Dels=0.00;FS=8.577;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.967;QD=21.97;ReadPosRankSum=2.422;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3933,444,0 chrXV 380513 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.2985;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.37;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3612,408,0 chrXV 380677 . A G 2482 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=19.09;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2515,285,0 chrXV 380683 . T C 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=-0.406;QD=17.98;ReadPosRankSum=1.705;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2352,267,0 chrXV 380689 . G T 2447 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=18.54;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2480,270,0 chrXV 380728 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=16.89;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2093,240,0 chrXV 380751 . A G 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=107;Dels=0.00;FS=2.865;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.267;QD=19.08;ReadPosRankSum=2.403;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2075,234,0 chrXV 380935 . G C 2411 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.75;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2444,279,0 chrXV 380964 . A G 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=103;Dels=0.00;FS=8.969;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=2.211;QD=23.31;ReadPosRankSum=2.354;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2434,276,0 chrXV 381739 . C T 5153.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.60;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5153,588,0 chrXV 381777 . A G 4555.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.6679;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.24;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4555,519,0 chrXV 382531 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.88;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3988,450,0 chrXV 382956 . A C 1555 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.73;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1588,186,0 chrXV 382957 . A G 1532 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.24;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1565,183,0 chrXV 383110 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.47;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1990,228,0 chrXV 383156 . C T 1572 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.90;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1605,186,0 chrXV 383527 . A T 270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.835;QD=10.00;ReadPosRankSum=1.605;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:33:303,33,0 chrXV 383538 . C A 572 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=17.33;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:69:605,69,0 chrXV 383827 . C T 4733.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.3765;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.09;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4733,531,0 chrXV 383933 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.3488;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.06;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3773,429,0 chrXV 383991 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.35;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3867,435,0 chrXV 384021 . G T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.27;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3875,426,0 chrXV 384208 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4737;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.63;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3781,411,0 chrXV 384314 . G T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.6557;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.35;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3277,357,0 chrXV 384316 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.6557;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.120;QD=19.68;ReadPosRankSum=1.689;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3162,366,0 chrXV 384338 . G T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.86;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3396,372,0 chrXV 384545 . T C 2050 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=22.04;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2083,240,0 chrXV 384592 . C A 2034 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=22.11;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2067,228,0 chrXV 384665 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=16.96;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1865,216,0 chrXV 384669 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=17.37;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1874,210,0 chrXV 384678 . T C 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;MQRankSum=-1.503;QD=13.61;ReadPosRankSum=1.699;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1476,174,0 chrXV 384696 . A G 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.768;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=0;MQRankSum=-1.074;QD=11.92;ReadPosRankSum=1.697;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1225,141,0 chrXV 384702 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;QD=11.94;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1191,132,0 chrXV 384718 . T C 980 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=11.81;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1013,114,0 chrXV 384732 . T A 845 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=11.74;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:878,99,0 chrXV 384747 . A G 658 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=0;QD=9.82;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:81:691,81,0 chrXV 384775 . C T 534 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=11.12;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:66:567,66,0 chrXV 384785 . C A 578 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=12.30;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:611,72,0 chrXV 384786 . G A 577 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=12.02;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:72:610,72,0 chrXV 384791 . G C 482 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=10.48;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:63:515,63,0 chrXV 384919 . C A 2347 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=21.93;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2380,264,0 chrXV 384942 . A G 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=4.405;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;MQRankSum=0.438;QD=19.86;ReadPosRankSum=1.694;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1840,210,0 chrXV 384993 . G A 324 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=8.10;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:42:357,42,0 chrXV 384994 . A G 318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=6.851;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;MQRankSum=0.923;QD=8.15;ReadPosRankSum=1.942;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:42:351,42,0 chrXV 385004 . G A 347 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=12.39;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:42:380,42,0 chrXV 385005 . G C 326 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=11.64;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:42:359,42,0 chrXV 385035 . C T 583 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=18.81;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:69:616,69,0 chrXV 385047 . T A 664 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=19.53;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:75:697,75,0 chrXV 385049 . A T 652 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=19.18;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:75:685,75,0 chrXV 385051 . C T 649 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=19.09;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:75:682,75,0 chrXV 385066 . G A 915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=9.208;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;MQRankSum=-0.762;QD=17.94;ReadPosRankSum=1.386;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:99:948,108,0 chrXV 385067 . A G 859 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=16.52;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:892,102,0 chrXV 385189 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;QD=15.83;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1125,132,0 chrXV 385213 . G A 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.848;DP=137;Dels=0.00;FS=27.192;HaplotypeScore=6.7395;MLEAC=1;MLEAF=0.500;MQ=31.85;MQ0=0;MQRankSum=-1.475;QD=0.73;ReadPosRankSum=4.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,21:137:99:130,0,166 chrXV 385320 . A T 41.97 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=128.5911;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=0.31;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:9:74,9,0 chrXV 385377 . C T 4347.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.01;FS=0.000;HaplotypeScore=15.0722;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=22.07;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4347,483,0 chrXV 385448 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=22.72;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3749,411,0 chrXV 385510 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.94;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3671,414,0 chrXV 385598 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.54;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3459,390,0 chrXV 385620 . T C 2681 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.62;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2714,309,0 chrXV 385654 . A T 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=125;Dels=0.02;FS=6.121;HaplotypeScore=5.7377;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-1.648;QD=12.90;ReadPosRankSum=2.681;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:1645,183,0 chrXV 385655 . A T 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=7.7936;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.268;QD=12.62;ReadPosRankSum=2.231;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:1611,186,0 chrXV 385782 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=22.44;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2344,258,0 chrXV 385806 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=20.13;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1986,219,0 chrXV 385811 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=19.97;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1890,222,0 chrXV 385824 . A G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=-1.420;QD=19.20;ReadPosRankSum=1.697;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1953,225,0 chrXV 385876 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.90;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2102,231,0 chrXV 385907 . C A 2511 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.69;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2544,279,0 chrXV 385971 . T A 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=101;Dels=0.00;FS=6.120;HaplotypeScore=8.0429;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.370;QD=19.63;ReadPosRankSum=2.410;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2016,228,0 chrXV 385998 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.39;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2048,231,0 chrXV 386205 . T C 2649 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.64;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2682,306,0 chrXV 386524 . A G 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=140;Dels=0.00;FS=12.747;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.507;QD=22.61;ReadPosRankSum=3.383;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:3199,357,0 chrXV 387013 . C A 3008 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3041,348,0 chrXV 387059 . C A 3119 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3152,348,0 chrXV 387208 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.951;QD=21.62;ReadPosRankSum=1.648;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3546,405,0 chrXV 387907 . C T 1726 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=21.31;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1759,198,0 chrXV 387912 . A G 1605 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=22.61;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1638,183,0 chrXV 387913 . G A 1548 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=21.80;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1581,177,0 chrXV 387926 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=22.08;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1402,159,0 chrXV 387971 . G A 897 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=22.42;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:930,102,0 chrXV 388262 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.73;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3487,375,0 chrXV 388327 . A T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.79;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3807,420,0 chrXV 388431 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.38;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3297,369,0 chrXV 388460 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.10;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3735,426,0 chrXV 388494 . C A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.0194;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.43;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4149,465,0 chrXV 388702 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.244;DP=155;Dels=0.00;FS=9.068;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.608;QD=20.26;ReadPosRankSum=3.402;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3173,354,0 chrXV 388715 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.94;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3329,375,0 chrXV 388841 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.14;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3087,333,0 chrXV 388855 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=131;Dels=0.00;FS=6.028;HaplotypeScore=2.8112;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=1.900;QD=19.55;ReadPosRankSum=2.870;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2594,294,0 chrXV 388869 . T G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=-0.115;QD=19.47;ReadPosRankSum=1.674;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2369,273,0 chrXV 388893 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.77;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2623,288,0 chrXV 388937 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.04;FS=0.000;HaplotypeScore=17.7839;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.87;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2834,327,0 chrXV 389116 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=3.938;HaplotypeScore=10.0138;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=0.688;QD=17.51;ReadPosRankSum=1.710;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2764,315,0 chrXV 389171 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;MQRankSum=-0.101;QD=13.19;ReadPosRankSum=1.687;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2078,240,0 chrXV 389175 . A T 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=1.071;QD=13.60;ReadPosRankSum=1.709;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2100,228,0 chrXV 389237 . T G 3845.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=22.62;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3845,435,0 chrXV 389464 . T C 1820 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=18.02;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1853,210,0 chrXV 389498 . T A 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.01;FS=4.825;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;MQRankSum=-0.718;QD=14.22;ReadPosRankSum=1.563;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1213,135,0 chrXV 389522 . C T 520 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=9.29;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:60:553,60,0 chrXV 389611 . G A 66.51 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=54.5774;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=1.13;SB=-7.725e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:12:99,12,0 chrXV 389653 . T G 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.465;DP=72;Dels=0.00;FS=6.202;HaplotypeScore=14.8302;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.392;QD=18.29;ReadPosRankSum=2.900;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:3,67:72:99:1350,153,0 chrXV 389798 . C A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=11.9842;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=24.43;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3762,417,0 chrXV 390355 . T A 3079 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.9456;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.84;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3112,342,0 chrXV 390692 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=191;Dels=0.00;FS=3.610;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.186;QD=22.22;ReadPosRankSum=1.713;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,185:191:99:4244,480,0 chrXV 390718 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.71;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3951,441,0 chrXV 391152 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.26;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2749,312,0 chrXV 391244 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.90;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1610,177,0 chrXV 391265 . G C 2018 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.93;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2051,234,0 chrXV 391349 . T C 2322 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.11;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2355,279,0 chrXV 391445 . C A 3098 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=25.39;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3131,339,0 chrXV 391475 . A G 2765 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.30;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2798,321,0 chrXV 391647 . C G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.60;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3293,369,0 chrXV 391650 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.59;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3330,372,0 chrXV 392258 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.8214;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.52;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2422,270,0 chrXV 392353 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.0832;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.66;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2935,333,0 chrXV 392644 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.880;QD=21.21;ReadPosRankSum=0.918;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3924,444,0 chrXV 392858 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1413;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.029;QD=20.87;ReadPosRankSum=1.706;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2829,327,0 chrXV 392965 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.10;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3008,330,0 chrXV 393128 . A G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.437;QD=23.53;ReadPosRankSum=1.700;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2551,291,0 chrXV 393187 . T C 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=127;Dels=0.00;FS=7.639;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.481;QD=21.76;ReadPosRankSum=2.411;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2796,321,0 chrXV 393383 . G C 3051 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.77;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3084,348,0 chrXV 393430 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=3.037;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.538;QD=22.99;ReadPosRankSum=1.711;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3702,423,0 chrXV 393958 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=164;Dels=0.00;FS=7.557;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.277;QD=21.49;ReadPosRankSum=2.390;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3524,411,0 chrXV 394357 . C G 2363 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.73;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2396,267,0 chrXV 394374 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.80;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2453,267,0 chrXV 394567 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.478;QD=21.79;ReadPosRankSum=1.015;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2561,288,0 chrXV 394716 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1905,216,0 chrXV 395073 . G C 3774.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.29;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3774,426,0 chrXV 395093 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=3.006;HaplotypeScore=7.0791;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.337;QD=18.78;ReadPosRankSum=2.421;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3244,375,0 chrXV 395268 . C T 2920 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2947;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.47;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2953,330,0 chrXV 395690 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3441,372,0 chrXV 395820 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.89;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2871,315,0 chrXV 395871 . C A 2934 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2967,327,0 chrXV 396098 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2954,336,0 chrXV 396447 . A C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=164;Dels=0.00;FS=3.027;HaplotypeScore=10.7811;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.296;QD=22.95;ReadPosRankSum=2.405;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3763,432,0 chrXV 396613 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.97;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3318,366,0 chrXV 396793 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=3.076;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.698;QD=18.99;ReadPosRankSum=1.706;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2577,300,0 chrXV 396805 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.14;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2560,285,0 chrXV 397231 . A T 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.582;DP=123;Dels=0.00;FS=9.916;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.271;QD=20.43;ReadPosRankSum=2.845;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2546,285,0 chrXV 397607 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2079,231,0 chrXV 397645 . C G 2722 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.07;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2755,315,0 chrXV 397987 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.57;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3272,357,0 chrXV 398023 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.72;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3748,423,0 chrXV 398146 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.07;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3483,396,0 chrXV 398242 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.27;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4077,453,0 chrXV 398416 . T C 4131.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.74;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4131,468,0 chrXV 398467 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=155;Dels=0.00;FS=6.079;HaplotypeScore=19.1728;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.656;QD=20.86;ReadPosRankSum=2.929;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3267,375,0 chrXV 398593 . T C 2192 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8227;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.40;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2225,249,0 chrXV 398605 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.76;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2108,234,0 chrXV 398665 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.69;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3074,351,0 chrXV 398944 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.83;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:3001,330,0 chrXV 399016 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=140;Dels=0.00;FS=5.419;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.645;QD=22.49;ReadPosRankSum=2.921;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:3182,360,0 chrXV 399085 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.516;QD=23.07;ReadPosRankSum=1.597;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2986,339,0 chrXV 399289 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3002,336,0 chrXV 399358 . T A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.02;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4028,447,0 chrXV 399526 . T C 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=176;Dels=0.00;FS=5.625;HaplotypeScore=12.5304;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.480;QD=22.47;ReadPosRankSum=2.926;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3954,450,0 chrXV 399654 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.230;QD=21.62;ReadPosRankSum=1.678;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4194,483,0 chrXV 399973 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.13;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2777,300,0 chrXV 400124 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.968;QD=22.93;ReadPosRankSum=1.705;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2968,339,0 chrXV 400317 . T C 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.398;QD=20.61;ReadPosRankSum=1.706;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2857,330,0 chrXV 400447 . G T 3140 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.22;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3173,348,0 chrXV 400878 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=3.487;HaplotypeScore=7.7841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.967;QD=25.41;ReadPosRankSum=1.687;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3938,423,0 chrXV 401023 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.45;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3323,381,0 chrXV 401076 . G C 2992 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.50;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3025,342,0 chrXV 401767 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.602;QD=22.92;ReadPosRankSum=1.667;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3736,438,0 chrXV 402136 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.54;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2128,237,0 chrXV 402137 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.88;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2101,243,0 chrXV 402498 . A G 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.554;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.000;QD=21.57;ReadPosRankSum=1.656;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2967,336,0 chrXV 402509 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=127;Dels=0.00;FS=6.561;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.561;QD=19.72;ReadPosRankSum=2.410;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2537,291,0 chrXV 402926 . A G 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.010;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.536;QD=22.72;ReadPosRankSum=1.667;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2464,279,0 chrXV 403168 . A G 2849 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2882,342,0 chrXV 403351 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.280;QD=21.33;ReadPosRankSum=1.711;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3455,393,0 chrXV 404477 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.88;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3544,405,0 chrXV 404516 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.2039;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.268;QD=23.23;ReadPosRankSum=1.713;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4158,474,0 chrXV 404582 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3727,423,0 chrXV 405136 . A C 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=9.059;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.537;QD=24.01;ReadPosRankSum=2.422;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4225,483,0 chrXV 405451 . C G 2923 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=16.1298;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.88;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2956,336,0 chrXV 405484 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.78;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2475,282,0 chrXV 405487 . T G 2425 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.95;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2458,282,0 chrXV 405535 . T C 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=8.937;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.584;QD=18.38;ReadPosRankSum=2.410;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2331,267,0 chrXV 406046 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.00;FS=2.991;HaplotypeScore=9.7942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.494;QD=23.29;ReadPosRankSum=2.422;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4215,486,0 chrXV 406547 . A G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.144;QD=21.56;ReadPosRankSum=1.701;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2448,282,0 chrXV 406655 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.78;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1912,225,0 chrXV 406687 . A G 1368 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.12;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1401,162,0 chrXV 406723 . A T 915 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.89;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:948,105,0 chrXV 406857 . T C 843 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=12.77;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:876,102,0 chrXV 406862 . T C 817 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=11.84;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:850,99,0 chrXV 406864 . G C 858 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=12.62;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:891,105,0 chrXV 406895 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=13.24;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:920,105,0 chrXV 406989 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.91;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1845,204,0 chrXV 407036 . T C 1763 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=19.37;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1796,207,0 chrXV 407043 . G T 1687 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=18.54;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1720,198,0 chrXV 407056 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=14.99;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1487,174,0 chrXV 407061 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=16.86;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1567,186,0 chrXV 407104 . A T 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;MQRankSum=0.995;QD=19.12;ReadPosRankSum=1.658;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1830,210,0 chrXV 407171 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.24;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2481,270,0 chrXV 407340 . G C 2991 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.83;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3024,345,0 chrXV 407771 . C T 6662.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=17.2393;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6662,738,0 chrXV 408436 . G T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.0794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3654,411,0 chrXV 408540 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=178;Dels=0.00;FS=3.559;HaplotypeScore=9.6648;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.595;QD=21.54;ReadPosRankSum=1.713;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3834,438,0 chrXV 408953 . C A 5894.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.06;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5894,648,0 chrXV 409147 . C T 6355.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=18.0161;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.47;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6355,708,0 chrXV 409273 . G T 5919.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.34;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5919,657,0 chrXV 409351 . G C 4559.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=23.0855;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.40;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4559,522,0 chrXV 409753 . G T 2851 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2884,315,0 chrXV 410084 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.52;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3096,339,0 chrXV 410118 . A T 2815 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.89;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2848,315,0 chrXV 410132 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.55;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2874,327,0 chrXV 410228 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.48;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2498,276,0 chrXV 410276 . C A 2872 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.74;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2905,327,0 chrXV 410471 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.51;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2948,324,0 chrXV 410731 . A T 3054 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.14;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3087,333,0 chrXV 410754 . G C 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.352;QD=18.37;ReadPosRankSum=1.706;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2513,275,0 chrXV 411250 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7027;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.336;QD=21.32;ReadPosRankSum=1.707;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2996,339,0 chrXV 411283 . A G 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=2.969;HaplotypeScore=12.8525;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.361;QD=21.04;ReadPosRankSum=2.400;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3168,360,0 chrXV 411421 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.24;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2659,306,0 chrXV 411906 . C T 4837.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.8505;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.48;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4837,531,0 chrXV 411947 . A T 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=3.532;HaplotypeScore=10.1489;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.294;QD=24.01;ReadPosRankSum=1.716;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5090,561,0 chrXV 412174 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.92;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3690,408,0 chrXV 412390 . A T 2374 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.20;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2407,273,0 chrXV 412522 . G T 1372 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9042;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.79;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1405,162,0 chrXV 412529 . A G 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=73;Dels=0.00;FS=2.577;HaplotypeScore=3.2215;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=1.098;QD=17.32;ReadPosRankSum=1.166;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1297,150,0 chrXV 412949 . C A 1938 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.07;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1971,219,0 chrXV 412981 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.04;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2083,225,0 chrXV 413171 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.615;QD=23.67;ReadPosRankSum=1.709;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3503,396,0 chrXV 413596 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.45;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2952,333,0 chrXV 413774 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=147;Dels=0.00;FS=8.631;HaplotypeScore=10.4311;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.212;QD=23.55;ReadPosRankSum=2.416;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3462,393,0 chrXV 414371 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=1;QD=23.24;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3672,408,0 chrXV 414403 . G C 3322.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=1;QD=21.71;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3322,390,0 chrXV 414444 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4769;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.059;QD=20.89;ReadPosRankSum=1.707;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2958,351,0 chrXV 415035 . A C 4317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=4.563;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.350;QD=23.21;ReadPosRankSum=1.694;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:4317,504,0 chrXV 415710 . T C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.327;QD=20.73;ReadPosRankSum=1.634;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2251,255,0 chrXV 416094 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1447,165,0 chrXV 416506 . A G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=96;Dels=0.00;FS=6.067;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.885;QD=22.72;ReadPosRankSum=2.347;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2214,249,0 chrXV 417076 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=185;Dels=0.00;FS=6.334;HaplotypeScore=10.8810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.020;QD=22.89;ReadPosRankSum=2.423;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4234,477,0 chrXV 417236 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.85;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4173,450,0 chrXV 417481 . A G 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=203;Dels=0.00;FS=7.049;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.699;QD=24.41;ReadPosRankSum=2.401;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4956,552,0 chrXV 417628 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.038;DP=198;Dels=0.00;FS=8.424;HaplotypeScore=11.3370;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.564;QD=21.42;ReadPosRankSum=2.250;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4241,480,0 chrXV 417733 . T C 2660 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.11;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2693,309,0 chrXV 417786 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.4771;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.36;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2190,246,0 chrXV 418136 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.9509;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.90;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3297,375,0 chrXV 418252 . C A 2320 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.90;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2353,258,0 chrXV 418408 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=21.81;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1429,156,0 chrXV 418409 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.08;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1424,156,0 chrXV 418470 . T C 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=74;Dels=0.03;FS=9.985;HaplotypeScore=9.9370;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.761;QD=19.74;ReadPosRankSum=2.903;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1494,168,0 chrXV 418654 . G T 2694 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.22;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2727,300,0 chrXV 418837 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.5188;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.95;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3924,426,0 chrXV 419065 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=12.0088;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.96;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3623,408,0 chrXV 419095 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.02;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3315,369,0 chrXV 419377 . A G 3060 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.82;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3093,363,0 chrXV 419521 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3645,396,0 chrXV 419928 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.35;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3911,426,0 chrXV 420094 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.019;DP=214;Dels=0.00;FS=14.843;HaplotypeScore=13.4020;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.726;QD=20.30;ReadPosRankSum=4.141;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:6,205:214:99:4345,495,0 chrXV 420114 . T G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.780;DP=219;Dels=0.00;FS=11.806;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.488;QD=21.22;ReadPosRankSum=3.759;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:5,213:219:99:4648,528,0 chrXV 420184 . T C 5460.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.2036;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.53;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5460,618,0 chrXV 420277 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.6423;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.75;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4915,555,0 chrXV 421530 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=163;Dels=0.00;FS=3.036;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.572;QD=19.31;ReadPosRankSum=2.373;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3180,360,0 chrXV 421680 . C T 4286.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.35;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4286,468,0 chrXV 421714 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.03;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3386,384,0 chrXV 422226 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=132;Dels=0.00;FS=4.327;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.386;QD=22.25;ReadPosRankSum=1.705;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2970,336,0 chrXV 422483 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0595;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.681;QD=21.61;ReadPosRankSum=1.193;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2950,333,0 chrXV 423321 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.1064;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.37;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3740,429,0 chrXV 423361 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.14;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3152,351,0 chrXV 423370 . T C 2766 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=14.95;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2799,318,0 chrXV 423571 . C T 4208.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.91;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4208,465,0 chrXV 423598 . A C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=177;Dels=0.00;FS=7.560;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.817;QD=22.50;ReadPosRankSum=2.408;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3983,459,0 chrXV 424102 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.01;FS=4.260;HaplotypeScore=9.0818;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.000;QD=22.92;ReadPosRankSum=1.681;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3173,360,0 chrXV 424140 . G C 2938 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.9499;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.84;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2971,345,0 chrXV 424341 . T C 3095 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3128,366,0 chrXV 424455 . A G 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=200;Dels=0.00;FS=2.565;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.975;QD=21.61;ReadPosRankSum=2.904;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:4322,492,0 chrXV 424779 . G C 2345 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.77;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2378,273,0 chrXV 425050 . T C 3186 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3219,372,0 chrXV 425179 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.684;DP=190;Dels=0.00;FS=19.958;HaplotypeScore=15.1248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.354;QD=21.25;ReadPosRankSum=3.808;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:5,185:190:99:4038,459,0 chrXV 425221 . G T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4395,498,0 chrXV 425274 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4437,489,0 chrXV 425464 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=173;Dels=0.00;FS=5.119;HaplotypeScore=13.3725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.113;QD=22.55;ReadPosRankSum=1.712;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,168:173:99:3902,444,0 chrXV 425518 . T C 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=3.941;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.226;QD=23.41;ReadPosRankSum=1.671;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4050,462,0 chrXV 426767 . G C 2999 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.55;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3032,351,0 chrXV 427406 . T C 3183 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3216,372,0 chrXV 427719 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.81;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2843,324,0 chrXV 427920 . G A 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.070;DP=454;Dels=0.00;FS=11.781;HaplotypeScore=969.1836;MLEAC=1;MLEAF=0.500;MQ=35.04;MQ0=0;MQRankSum=4.216;QD=0.20;ReadPosRankSum=1.936;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/1:291,148:454:99:122,0,393 chrXV 427923 . G A 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.570;DP=449;Dels=0.00;FS=8.757;HaplotypeScore=903.7763;MLEAC=1;MLEAF=0.500;MQ=34.67;MQ0=0;MQRankSum=-7.583;QD=0.33;ReadPosRankSum=-7.151;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:174,100:449:99:177,0,230 chrXV 427926 . G T 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.261;DP=446;Dels=0.00;FS=0.890;HaplotypeScore=987.2209;MLEAC=1;MLEAF=0.500;MQ=34.62;MQ0=0;MQRankSum=-8.420;QD=0.19;ReadPosRankSum=-10.131;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:337,83:446:99:116,0,454 chrXV 427929 . A G 300.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.712;DP=447;Dels=0.00;FS=4.595;HaplotypeScore=1112.4839;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=0;MQRankSum=-6.853;QD=0.67;ReadPosRankSum=3.265;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:351,96:447:99:330,0,279 chrXV 427947 . G T 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.709;DP=391;Dels=0.00;FS=1.159;HaplotypeScore=853.8774;MLEAC=1;MLEAF=0.500;MQ=33.77;MQ0=0;MQRankSum=-8.850;QD=0.49;ReadPosRankSum=-0.393;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:131,89:391:99:222,0,195 chrXV 427950 . G A 102.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.878;DP=360;Dels=0.00;FS=1.860;HaplotypeScore=511.0365;MLEAC=1;MLEAF=0.500;MQ=33.54;MQ0=0;MQRankSum=-0.150;QD=0.28;ReadPosRankSum=-2.675;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:304,55:360:99:132,0,516 chrXV 427953 . A G 152.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-9.649;DP=319;Dels=0.00;FS=17.549;HaplotypeScore=320.1501;MLEAC=1;MLEAF=0.500;MQ=33.69;MQ0=0;MQRankSum=8.047;QD=0.48;ReadPosRankSum=4.374;SB=-2.400e+02 GT:AD:DP:GQ:PL 0/1:150,169:319:99:182,0,417 chrXV 427956 . A T 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;DP=320;Dels=0.00;FS=14.756;HaplotypeScore=339.0665;MLEAC=1;MLEAF=0.500;MQ=33.74;MQ0=0;MQRankSum=-8.586;QD=0.28;ReadPosRankSum=-3.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,65:320:99:120,0,471 chrXV 427962 . A T 105.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DP=286;Dels=0.00;FS=6.892;HaplotypeScore=207.4724;MLEAC=1;MLEAF=0.500;MQ=32.99;MQ0=0;MQRankSum=-8.019;QD=0.37;ReadPosRankSum=-4.896;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:173,65:286:99:135,0,354 chrXV 427968 . G A 166.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.363;DP=258;Dels=0.00;FS=13.952;HaplotypeScore=134.7442;MLEAC=1;MLEAF=0.500;MQ=31.90;MQ0=0;MQRankSum=5.652;QD=0.64;ReadPosRankSum=7.951;SB=-1.780e+02 GT:AD:DP:GQ:PL 0/1:136,122:258:99:196,0,387 chrXV 427971 . G A 167.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.986;DP=235;Dels=0.00;FS=11.960;HaplotypeScore=142.2341;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=0;MQRankSum=4.483;QD=0.71;ReadPosRankSum=6.592;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/1:122,112:235:99:197,0,377 chrXV 427974 . G A 391.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.964;DP=218;Dels=0.00;FS=14.022;HaplotypeScore=134.4658;MLEAC=1;MLEAF=0.500;MQ=31.67;MQ0=0;MQRankSum=3.228;QD=1.79;ReadPosRankSum=4.634;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:96,122:218:99:421,0,178 chrXV 427980 . G A 598.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.770;DP=211;Dels=0.00;FS=1.545;HaplotypeScore=235.9595;MLEAC=1;MLEAF=0.500;MQ=31.04;MQ0=0;MQRankSum=0.372;QD=2.83;ReadPosRankSum=5.499;SB=-3.680e+02 GT:AD:DP:GQ:PL 0/1:87,124:211:99:628,0,156 chrXV 427983 . G A 725.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.770;DP=200;Dels=0.00;FS=1.523;HaplotypeScore=189.9125;MLEAC=1;MLEAF=0.500;MQ=30.98;MQ0=0;MQRankSum=-4.497;QD=3.63;ReadPosRankSum=-1.519;SB=-4.650e+02 GT:AD:DP:GQ:PL 0/1:77,123:200:49:755,0,49 chrXV 427986 . G A 617.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.589;DP=187;Dels=0.00;FS=37.389;HaplotypeScore=117.3455;MLEAC=1;MLEAF=0.500;MQ=30.94;MQ0=0;MQRankSum=-3.655;QD=3.30;ReadPosRankSum=6.024;SB=-5.450e+02 GT:AD:DP:GQ:PL 0/1:94,93:187:99:647,0,176 chrXV 427989 . G A 791.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=6.055;DP=170;Dels=0.00;FS=18.724;HaplotypeScore=78.0772;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;MQRankSum=-5.600;QD=4.66;ReadPosRankSum=3.093;SB=-5.905e+02 GT:AD:DP:GQ:PL 1/1:50,120:170:2:821,2,0 chrXV 427992 . G A 895.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.590;DP=167;Dels=0.00;FS=17.666;HaplotypeScore=46.4580;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;MQRankSum=-4.422;QD=5.36;ReadPosRankSum=4.514;SB=-7.193e+02 GT:AD:DP:GQ:PL 1/1:38,129:167:15:928,15,0 chrXV 428001 . G A 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.884;DP=165;Dels=0.00;FS=2.513;HaplotypeScore=21.6823;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;MQRankSum=0.860;QD=6.72;ReadPosRankSum=-1.628;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:1142,113,0 chrXV 428028 . A G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.509;DP=264;Dels=0.00;FS=2.992;HaplotypeScore=244.7294;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;MQRankSum=-0.378;QD=7.15;ReadPosRankSum=3.456;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:10,254:264:99:1920,210,0 chrXV 428753 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=149;Dels=0.00;FS=6.849;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.421;QD=20.66;ReadPosRankSum=2.367;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3111,360,0 chrXV 428807 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.73;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3501,399,0 chrXV 428898 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.96;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3498,384,0 chrXV 429219 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.31;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3346,387,0 chrXV 429552 . C T 4778.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4778,528,0 chrXV 429624 . A G 4668.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4668,534,0 chrXV 429729 . G A 5303.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.7924;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.76;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5303,588,0 chrXV 429834 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.9627;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.30;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3947,432,0 chrXV 429969 . A G 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=138;Dels=0.00;FS=10.122;HaplotypeScore=125.7808;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.307;QD=20.73;ReadPosRankSum=2.949;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2894,327,0 chrXV 430036 . C G 1636 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=17.40;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1669,183,0 chrXV 430667 . C T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4621,504,0 chrXV 431558 . G T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.9714;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.12;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3583,402,0 chrXV 431849 . G C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3244,366,0 chrXV 432006 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.125;QD=22.82;ReadPosRankSum=1.711;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3788,447,0 chrXV 433358 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=144;Dels=0.00;FS=8.288;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.006;QD=23.65;ReadPosRankSum=3.313;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3405,390,0 chrXV 433431 . T A 2840 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.90;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2873,315,0 chrXV 434027 . C T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.60;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5121,567,0 chrXV 434141 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4175,477,0 chrXV 434277 . G A 5112.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.03;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5112,552,0 chrXV 434395 . A C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.5067;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.244;QD=20.08;ReadPosRankSum=1.685;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,219:224:99:4497,519,0 chrXV 434570 . C A 3007 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.49;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3040,339,0 chrXV 434999 . A T 1959 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.26;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1992,231,0 chrXV 435286 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.13;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2146,240,0 chrXV 435369 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2158,237,0 chrXV 435862 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.93;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2066,225,0 chrXV 435875 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.959;QD=18.92;ReadPosRankSum=1.665;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2020,234,0 chrXV 435971 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2467,270,0 chrXV 436036 . A G 2363 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.3749;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.72;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2396,273,0 chrXV 436196 . C T 3892.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.11;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3892,426,0 chrXV 436490 . C G 2575 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.39;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2608,297,0 chrXV 436610 . G C 1939 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1972,225,0 chrXV 436690 . A G 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.840;QD=20.79;ReadPosRankSum=1.680;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1405,165,0 chrXV 436826 . T C 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.247;QD=20.35;ReadPosRankSum=1.683;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1498,174,0 chrXV 436910 . A G 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=59;Dels=0.00;FS=7.634;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.597;QD=20.71;ReadPosRankSum=1.673;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1255,144,0 chrXV 436950 . A G 1530 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.86;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1563,180,0 chrXV 436959 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.71;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1545,183,0 chrXV 437000 . T C 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.180;QD=21.54;ReadPosRankSum=1.682;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1519,177,0 chrXV 437037 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.12;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2021,222,0 chrXV 437180 . A C 2310 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.33;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2343,267,0 chrXV 437266 . A T 2237 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2270,252,0 chrXV 437324 . A G 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=7.482;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.072;QD=22.15;ReadPosRankSum=2.409;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2691,309,0 chrXV 437366 . A T 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.107;QD=20.30;ReadPosRankSum=1.701;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2327,264,0 chrXV 437406 . C T 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=121;Dels=0.00;FS=6.130;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=1.677;QD=19.26;ReadPosRankSum=2.165;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2364,258,0 chrXV 437454 . T A 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.163;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.478;QD=22.22;ReadPosRankSum=1.702;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2610,288,0 chrXV 437624 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=25.47;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3922,429,0 chrXV 437767 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.01;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3477,393,0 chrXV 437809 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=20.89;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3468,390,0 chrXV 437815 . C G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=21.49;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3331,375,0 chrXV 437954 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.8984;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=24.25;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4268,474,0 chrXV 438011 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=23.46;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4199,477,0 chrXV 438049 . T C 3105 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=19.41;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3138,360,0 chrXV 438055 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=19.56;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3104,339,0 chrXV 438064 . G T 2694 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=18.08;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2727,300,0 chrXV 438092 . A G 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;MQRankSum=1.635;QD=14.85;ReadPosRankSum=1.708;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2172,249,0 chrXV 438107 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=107.2957;MLEAC=2;MLEAF=1.00;MQ=36.09;MQ0=0;QD=15.79;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2354,264,0 chrXV 438163 . T C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=14.708;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=-0.631;QD=18.59;ReadPosRankSum=2.384;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2822,336,0 chrXV 438216 . T C 2771 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.83;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2804,318,0 chrXV 438305 . T A 1121 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=20.02;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1154,129,0 chrXV 438324 . A G 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.001;DP=55;Dels=0.00;FS=6.264;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=1.191;QD=19.71;ReadPosRankSum=2.360;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1117,126,0 chrXV 438354 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.22;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1263,141,0 chrXV 438605 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=23.19;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2375,264,0 chrXV 438791 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=18.89;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2848,306,0 chrXV 438798 . T A 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;MQRankSum=-0.022;QD=18.27;ReadPosRankSum=1.666;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2920,321,0 chrXV 438814 . C T 2764 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=16.07;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2797,315,0 chrXV 438819 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=16.24;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2875,312,0 chrXV 438840 . T A 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;MQRankSum=-1.332;QD=12.57;ReadPosRankSum=1.710;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:1994,222,0 chrXV 438841 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;QD=12.60;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:1998,225,0 chrXV 438910 . T C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.126;QD=20.16;ReadPosRankSum=2.416;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2996,348,0 chrXV 438954 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.69;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3791,414,0 chrXV 438975 . A T 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.460;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-1.612;QD=22.41;ReadPosRankSum=1.692;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3877,429,0 chrXV 439071 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.25;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3719,417,0 chrXV 439104 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.333;QD=21.35;ReadPosRankSum=1.678;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4099,471,0 chrXV 439152 . T G 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=3.030;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.006;QD=21.61;ReadPosRankSum=2.425;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4322,498,0 chrXV 439194 . G A 4907.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.6376;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.72;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4907,552,0 chrXV 439263 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.4428;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.52;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4242,465,0 chrXV 439671 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.03;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3685,423,0 chrXV 439785 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.63;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3710,414,0 chrXV 439830 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=187;Dels=0.00;FS=6.085;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.470;QD=22.49;ReadPosRankSum=2.962;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4206,486,0 chrXV 440656 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=24.5526;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.57;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4379,480,0 chrXV 440747 . A C 4824.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.08;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4824,546,0 chrXV 441136 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=153;Dels=0.00;FS=7.858;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.041;QD=21.03;ReadPosRankSum=2.400;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3250,369,0 chrXV 441487 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.0197;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.47;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2756,312,0 chrXV 441731 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.08;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2537,282,0 chrXV 441965 . C T 5107.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.3246;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.53;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5107,561,0 chrXV 442178 . A G 6931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=308;Dels=0.00;FS=2.739;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.801;QD=22.50;ReadPosRankSum=2.386;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:2,306:308:99:6931,789,0 chrXV 442226 . C T 6372.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=19.8105;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.60;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,290:295:99:6372,720,0 chrXV 442592 . A T 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.671;QD=22.96;ReadPosRankSum=1.607;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2582,279,0 chrXV 442720 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1868;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.80;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3451,378,0 chrXV 442786 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.611;QD=22.55;ReadPosRankSum=2.397;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4216,486,0 chrXV 442914 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8483;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.25;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3697,402,0 chrXV 442941 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=3.160;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.431;QD=17.85;ReadPosRankSum=1.715;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:3695,432,0 chrXV 442944 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.9085;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=16.81;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:3631,423,0 chrXV 443071 . G C 4365.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.2208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4365,501,0 chrXV 443358 . T C 2974 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.83;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3007,342,0 chrXV 443409 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.00;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3023,339,0 chrXV 443587 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.97;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2910,324,0 chrXV 443611 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=3.332;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.186;QD=22.90;ReadPosRankSum=-1.701;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2598,294,0 chrXV 443738 . A G 2802 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.23;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2835,330,0 chrXV 443923 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.74;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2830,318,0 chrXV 444015 . G T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.60;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3379,369,0 chrXV 444029 . A T 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=179;Dels=0.00;FS=7.247;HaplotypeScore=14.6286;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-2.065;QD=19.39;ReadPosRankSum=2.367;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3471,384,0 chrXV 444178 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=181;Dels=0.00;FS=6.045;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.995;QD=22.43;ReadPosRankSum=2.872;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4060,453,0 chrXV 444258 . T A 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=160;Dels=0.00;FS=6.048;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.315;QD=22.29;ReadPosRankSum=2.296;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3567,402,0 chrXV 444326 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=2.887;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.040;QD=20.08;ReadPosRankSum=2.346;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2904,333,0 chrXV 444406 . A G 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=149;Dels=0.00;FS=5.215;HaplotypeScore=14.3910;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.358;QD=20.58;ReadPosRankSum=3.341;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3099,348,0 chrXV 444467 . T G 2009 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.50;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2042,234,0 chrXV 444641 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.83;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4814,540,0 chrXV 445648 . C T 4549.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.3284;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.66;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4549,516,0 chrXV 445939 . A G 2139 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2172,258,0 chrXV 445973 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2740,309,0 chrXV 446025 . A G 2944 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.93;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2977,339,0 chrXV 446328 . G C 4489.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.0298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4489,516,0 chrXV 446514 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4198,471,0 chrXV 446616 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.73;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4273,480,0 chrXV 447004 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.228;QD=22.14;ReadPosRankSum=1.701;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2491,282,0 chrXV 447432 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=150;Dels=0.00;FS=2.340;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.712;QD=23.96;ReadPosRankSum=3.790;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:5,145:150:99:3594,411,0 chrXV 447509 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8026;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.77;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4123,447,0 chrXV 447540 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.57;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3327,381,0 chrXV 447546 . C A 3076 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.42;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3109,357,0 chrXV 447606 . C A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.77;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4191,465,0 chrXV 447942 . C T 6764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=19.5461;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.329;QD=22.77;ReadPosRankSum=0.911;SB=-3.473e+03 GT:AD:DP:GQ:PL 1/1:2,294:297:99:6764,724,0 chrXV 448080 . T C 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=226;Dels=0.00;FS=13.885;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.965;QD=20.80;ReadPosRankSum=3.422;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:4,221:226:99:4701,540,0 chrXV 448528 . C T 106.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=15.18;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:139,15,0 chrXV 448535 . A G 118.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=16.88;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:151,18,0 chrXV 448955 . T C 1764 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1797,207,0 chrXV 448985 . A G 1483 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1516,174,0 chrXV 449105 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.0817;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.04;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2942,318,0 chrXV 449205 . A C 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.722;DP=107;Dels=0.00;FS=2.365;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.356;QD=21.08;ReadPosRankSum=2.587;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:3,102:107:99:2289,245,0 chrXV 449353 . A G 2948 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.03;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2981,339,0 chrXV 449867 . A C 3066 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.05;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3099,354,0 chrXV 449944 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3787,432,0 chrXV 450086 . T C 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.557;QD=22.53;ReadPosRankSum=1.710;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3582,411,0 chrXV 450216 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.6503;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.61;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2929,324,0 chrXV 450301 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=3.010;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.472;QD=19.58;ReadPosRankSum=1.715;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3876,450,0 chrXV 450461 . G A 4382.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.31;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4382,489,0 chrXV 450650 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.6466;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.57;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3972,456,0 chrXV 451001 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=143;Dels=0.00;FS=6.113;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.198;QD=21.33;ReadPosRankSum=2.415;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3083,357,0 chrXV 451052 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2022;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.78;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3398,375,0 chrXV 451154 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.67;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4285,486,0 chrXV 451172 . A C 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=4.168;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-1.732;QD=19.92;ReadPosRankSum=1.714;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3765,426,0 chrXV 451183 . G A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.56;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3639,393,0 chrXV 451274 . C T 3479.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.2661;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.16;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3479,396,0 chrXV 451593 . A G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.463;QD=23.22;ReadPosRankSum=2.397;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2192,249,0 chrXV 451948 . G T 2945 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.01;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2978,336,0 chrXV 452278 . T A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.68;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4011,450,0 chrXV 452290 . G A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.54;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3779,411,0 chrXV 452446 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=171;Dels=0.00;FS=3.026;HaplotypeScore=16.6895;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.300;QD=21.47;ReadPosRankSum=2.420;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,166:171:99:3671,417,0 chrXV 452536 . T C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=3.010;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.017;QD=23.20;ReadPosRankSum=1.677;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:3002,345,0 chrXV 452641 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.063;QD=21.60;ReadPosRankSum=1.708;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3186,369,0 chrXV 453067 . C T 4220.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.2983;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.98;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4220,468,0 chrXV 453073 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.55;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4137,456,0 chrXV 453180 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=163;Dels=0.00;FS=6.210;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.882;QD=22.93;ReadPosRankSum=2.359;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3737,423,0 chrXV 453707 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=3.197;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.587;QD=24.18;ReadPosRankSum=1.703;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2910,333,0 chrXV 453762 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.95;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3177,360,0 chrXV 453897 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=18.2541;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.59;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2318,255,0 chrXV 454944 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=7.737;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=2.211;QD=23.48;ReadPosRankSum=2.420;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3898,444,0 chrXV 455108 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.47;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3475,396,0 chrXV 455286 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3513,378,0 chrXV 455342 . T C 2845 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.76;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2878,330,0 chrXV 456606 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3558,390,0 chrXV 456645 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.961;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.305;QD=21.74;ReadPosRankSum=1.026;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3827,423,0 chrXV 457110 . C T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=23.11;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4022,450,0 chrXV 457531 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.18;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4447,507,0 chrXV 457548 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=215;Dels=0.00;FS=13.891;HaplotypeScore=4.0032;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.835;QD=19.62;ReadPosRankSum=2.967;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:3,210:215:99:4219,495,0 chrXV 457599 . T C 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=279;Dels=0.00;FS=15.089;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.960;QD=19.68;ReadPosRankSum=2.953;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:3,276:279:99:5492,624,0 chrXV 457679 . T G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.65;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3737,420,0 chrXV 458312 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.64;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3701,402,0 chrXV 458549 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.1222;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.10;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3372,372,0 chrXV 458585 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.87;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3006,339,0 chrXV 458665 . G T 2583 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.35;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2616,285,0 chrXV 458684 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.23;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2258,246,0 chrXV 458891 . A C 2610 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=22.50;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2643,303,0 chrXV 459089 . T A 36.97 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3997;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=0.49;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:9:69,9,0 chrXV 459568 . G A 5552.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=18.5300;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.14;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5552,606,0 chrXV 459840 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=3.5646;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.68;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2791,306,0 chrXV 459843 . T A 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=4.3533;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.205;QD=17.73;ReadPosRankSum=1.664;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2745,300,0 chrXV 459980 . G A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.99;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4068,444,0 chrXV 460017 . G A 5129.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.7517;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.10;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5129,582,0 chrXV 460179 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.07;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3597,399,0 chrXV 460248 . T C 4898.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.6910;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.11;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4898,555,0 chrXV 460379 . T A 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.4206;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.428;QD=24.29;ReadPosRankSum=1.675;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4420,486,0 chrXV 460815 . G A 4800.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.0172;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.97;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4800,528,0 chrXV 460848 . T A 5102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=225;Dels=0.00;FS=7.702;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.344;QD=22.68;ReadPosRankSum=2.406;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5102,558,0 chrXV 460866 . G A 4637.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.16;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4637,522,0 chrXV 460871 . A C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=227;Dels=0.00;FS=8.185;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.624;QD=19.11;ReadPosRankSum=3.360;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:4,221:227:99:4338,504,0 chrXV 461249 . A T 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=90;Dels=0.00;FS=2.463;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.596;QD=21.27;ReadPosRankSum=2.922;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1947,213,0 chrXV 461423 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=16.77;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1475,168,0 chrXV 461434 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=19.55;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1538,177,0 chrXV 461644 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=19.85;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2097,240,0 chrXV 461659 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.12;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1972,228,0 chrXV 461660 . T C 1942 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.98;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1975,231,0 chrXV 461696 . G C 2501 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.74;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2534,291,0 chrXV 462083 . T C 3107 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3140,375,0 chrXV 462906 . C G 3124 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.17;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,157:163:99:3157,360,0 chrXV 462960 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.29;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3219,366,0 chrXV 462984 . T A 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=153;Dels=0.00;FS=2.972;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.634;QD=21.05;ReadPosRankSum=2.385;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3253,366,0 chrXV 463015 . A C 3350.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2843;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.20;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3350,381,0 chrXV 463185 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.74;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2460,270,0 chrXV 463192 . G T 2365 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.04;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2398,264,0 chrXV 463406 . T A 1727 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.32;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1760,198,0 chrXV 463444 . C A 1819 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.03;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1852,204,0 chrXV 463766 . G T 2858 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.50;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2891,315,0 chrXV 463787 . A C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.199;QD=21.35;ReadPosRankSum=1.705;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2809,318,0 chrXV 463865 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.22;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2611,285,0 chrXV 463870 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.077;QD=20.80;ReadPosRankSum=2.406;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2363,273,0 chrXV 463933 . G T 2172 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.49;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2205,252,0 chrXV 464038 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=23.16;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1515,165,0 chrXV 464113 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=23.03;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1668,189,0 chrXV 464158 . C T 1219 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=23.44;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1252,141,0 chrXV 464215 . A C 680 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=22.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:81:713,81,0 chrXV 464237 . T C 528 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=18.86;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:69:561,69,0 chrXV 464238 . A G 590 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=21.07;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:69:623,69,0 chrXV 464244 . G T 574 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=18.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:69:607,69,0 chrXV 464346 . T C 243 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=8.68;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:30:276,30,0 chrXV 464562 . G A 998 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=3.8980;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=19.19;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1031,117,0 chrXV 464863 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.24;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2775,303,0 chrXV 464890 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.79;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2546,291,0 chrXV 465313 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=162;Dels=0.00;FS=10.771;HaplotypeScore=3.5740;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.181;QD=20.50;ReadPosRankSum=2.931;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3321,375,0 chrXV 465319 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.54;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3554,387,0 chrXV 465410 . C G 3364.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.84;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3364,381,0 chrXV 465655 . G A 4641.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.8834;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.72;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:4641,531,0 chrXV 465661 . G A 4501.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.0968;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.66;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4501,525,0 chrXV 466340 . A G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=123;Dels=0.00;FS=5.524;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.271;QD=21.14;ReadPosRankSum=2.828;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2633,300,0 chrXV 466550 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2440,264,0 chrXV 466702 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3341,384,0 chrXV 466762 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=4.299;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.772;QD=22.70;ReadPosRankSum=1.662;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3383,387,0 chrXV 467008 . G C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3295,390,0 chrXV 467149 . T A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.80;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3853,423,0 chrXV 467407 . A G 5390.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.0977;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.65;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5390,630,0 chrXV 467641 . T C 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=225;Dels=0.00;FS=3.168;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.789;QD=22.17;ReadPosRankSum=1.670;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4988,579,0 chrXV 468284 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.5990;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.01;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4764,543,0 chrXV 468336 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.090;QD=21.98;ReadPosRankSum=1.612;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3825,432,0 chrXV 468364 . T C 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=4.002;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.206;QD=22.32;ReadPosRankSum=1.714;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4285,489,0 chrXV 468561 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.022;QD=20.59;ReadPosRankSum=1.688;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3245,372,0 chrXV 468569 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.94;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3215,348,0 chrXV 468674 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.257;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.202;QD=23.17;ReadPosRankSum=1.711;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3777,435,0 chrXV 468772 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=158;Dels=0.00;FS=3.536;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.504;QD=22.12;ReadPosRankSum=1.688;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3495,390,0 chrXV 469093 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.42;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3007,330,0 chrXV 469262 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.03;FS=0.000;HaplotypeScore=11.9138;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.12;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2061,234,0 chrXV 469522 . G T 2671 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.2288;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.64;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2704,300,0 chrXV 469535 . T G 2687 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.36;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2720,303,0 chrXV 469545 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.98;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2557,279,0 chrXV 469548 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.16;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2612,285,0 chrXV 470004 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.71;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2077,231,0 chrXV 470034 . G T 2010 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.84;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2043,225,0 chrXV 470972 . G T 2867 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.94;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2900,318,0 chrXV 471091 . A G 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=117;Dels=0.00;FS=6.685;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.453;QD=20.11;ReadPosRankSum=2.407;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2386,282,0 chrXV 471279 . C A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.24;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3486,384,0 chrXV 471315 . G T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.21;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3442,378,0 chrXV 471323 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.78;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3419,390,0 chrXV 471770 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.42;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3654,411,0 chrXV 471872 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=18.6953;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.70;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4147,456,0 chrXV 471953 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.9188;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.692;QD=24.06;ReadPosRankSum=0.757;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4186,474,0 chrXV 472690 . C T 5394.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.05;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5394,594,0 chrXV 472765 . A C 5597.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=2.5475;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.81;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5597,645,0 chrXV 472766 . A G 5565.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=2.5475;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.54;SB=-3.178e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:5565,645,0 chrXV 472780 . C T 5766.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=6.7506;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.04;SB=-3.553e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5766,633,0 chrXV 473069 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.41;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3586,411,0 chrXV 474069 . A G 5042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=217;Dels=0.00;FS=9.110;HaplotypeScore=9.4779;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.494;QD=23.24;ReadPosRankSum=2.359;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:5042,591,0 chrXV 475032 . A C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.233;QD=22.88;ReadPosRankSum=1.627;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3053,348,0 chrXV 475809 . T C 2819 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2852,321,0 chrXV 476517 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2107,240,0 chrXV 476717 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.02;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1315,150,0 chrXV 476972 . A G 1378 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1411,162,0 chrXV 477041 . T C 987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=3.104;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.006;QD=20.56;ReadPosRankSum=2.348;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1020,120,0 chrXV 477077 . T C 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.070;QD=20.70;ReadPosRankSum=1.681;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1461,168,0 chrXV 477610 . A G 2761 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=17.93;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2794,318,0 chrXV 477611 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=18.35;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2914,321,0 chrXV 477629 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=20.91;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3345,363,0 chrXV 477659 . A G 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=4.187;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.312;QD=16.94;ReadPosRankSum=1.583;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2387,273,0 chrXV 477680 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=17.05;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1602,183,0 chrXV 477707 . T C 1667 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.85;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1700,198,0 chrXV 477773 . A G 3054 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.50;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3087,357,0 chrXV 477793 . G T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=20.88;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3340,372,0 chrXV 477802 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-1.074;QD=18.81;ReadPosRankSum=1.710;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3005,345,0 chrXV 478649 . G A 5121.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.6971;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.65;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5121,588,0 chrXV 478679 . A G 6490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=9.5572;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.454;QD=20.94;ReadPosRankSum=1.721;SB=-3.734e+03 GT:AD:DP:GQ:PL 1/1:1,308:310:99:6490,738,0 chrXV 478750 . C T 5820.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=19.4384;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.94;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:5820,636,0 chrXV 478915 . G T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.8030;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.80;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:4618,507,0 chrXV 479299 . T C 701 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.735;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.349;QD=14.91;ReadPosRankSum=2.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,44:47:87:734,87,0 chrXV 479565 . T C 6141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=264;Dels=0.00;FS=2.569;HaplotypeScore=29.3943;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.164;QD=23.26;ReadPosRankSum=2.973;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:3,260:264:99:6141,702,0 chrXV 480090 . C T 6997.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=22.3267;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.49;SB=-3.710e+03 GT:AD:DP:GQ:PL 1/1:0,357:359:99:6997,795,0 chrXV 480144 . G A 8273.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=18.8263;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.48;SB=-4.227e+03 GT:AD:DP:GQ:PL 1/1:0,366:368:99:8273,907,0 chrXV 480673 . T C 6224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=280;Dels=0.00;FS=2.632;HaplotypeScore=15.7696;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.126;QD=22.23;ReadPosRankSum=2.301;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:2,278:280:99:6224,714,0 chrXV 480906 . G A 5961.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.41;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:5961,675,0 chrXV 480909 . T C 5622.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.37;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:5622,645,0 chrXV 481143 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.02;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3501,390,0 chrXV 481447 . T C 6218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=16.3727;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.308;QD=21.67;ReadPosRankSum=1.696;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:1,285:287:99:6218,711,0 chrXV 481588 . C T 4155.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.4942;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.60;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4155,465,0 chrXV 481817 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.24;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2769,306,0 chrXV 481843 . T C 2823 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.31;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2856,333,0 chrXV 481860 . T A 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.746;QD=20.16;ReadPosRankSum=1.682;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2795,309,0 chrXV 482126 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.88;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2998,324,0 chrXV 482383 . T G 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;DP=199;Dels=0.00;FS=9.067;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.348;QD=21.47;ReadPosRankSum=3.416;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:4,194:199:99:4272,495,0 chrXV 482608 . G A 5323.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=7.0668;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.71;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,250:257:99:5323,594,0 chrXV 483363 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3828,441,0 chrXV 483971 . C T 4550.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=21.4216;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.41;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4550,510,0 chrXV 484571 . G C 4119.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.6272;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.15;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,181:186:99:4119,471,0 chrXV 485571 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.33;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3668,405,0 chrXV 485588 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.6486;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.69;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3731,402,0 chrXV 485898 . A G 4826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=216;Dels=0.00;FS=3.301;HaplotypeScore=14.3769;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.738;QD=22.34;ReadPosRankSum=1.716;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4826,561,0 chrXV 485952 . C T 4949.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.80;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:4949,549,0 chrXV 486108 . C T 4251.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.6992;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.26;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4251,480,0 chrXV 486243 . C G 4024.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.8486;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.87;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:4024,459,0 chrXV 486303 . T C 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.087;QD=22.75;ReadPosRankSum=1.710;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3663,414,0 chrXV 486327 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.441;QD=21.64;ReadPosRankSum=1.711;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3484,399,0 chrXV 486494 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=20.60;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3275,363,0 chrXV 486508 . C T 2605 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=17.97;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2638,291,0 chrXV 486509 . T C 2489 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=3.040;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=0.338;QD=17.53;ReadPosRankSum=2.415;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2522,291,0 chrXV 486511 . G C 2577 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=17.90;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2610,297,0 chrXV 487028 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9177;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.58;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3442,378,0 chrXV 487809 . A G 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=110;Dels=0.00;FS=6.552;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.392;QD=19.65;ReadPosRankSum=2.338;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2194,249,0 chrXV 487820 . T C 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=107;Dels=0.00;FS=5.880;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.433;QD=16.05;ReadPosRankSum=2.779;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:3,102:107:99:1750,204,0 chrXV 487838 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.45;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1997,216,0 chrXV 488123 . G A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.32;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4267,468,0 chrXV 488163 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4011;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.37;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4026,435,0 chrXV 488189 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.32;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4240,471,0 chrXV 488270 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.4472;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.54;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3451,393,0 chrXV 488280 . T C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=5.315;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=1.642;QD=20.24;ReadPosRankSum=1.709;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3129,351,0 chrXV 488300 . A G 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.590;QD=19.90;ReadPosRankSum=2.415;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2878,327,0 chrXV 488333 . T C 3132 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.74;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3165,357,0 chrXV 488381 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.28;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,140:145:99:3118,354,0 chrXV 488504 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9206;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.92;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2926,327,0 chrXV 488540 . T A 2462 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.24;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2495,276,0 chrXV 488543 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-0.086;QD=16.50;ReadPosRankSum=1.708;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2360,270,0 chrXV 488607 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.130;QD=18.57;ReadPosRankSum=1.709;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2782,309,0 chrXV 488630 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.58;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2914,327,0 chrXV 488732 . C A 3168 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.47;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3201,357,0 chrXV 488859 . T C 2856 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.14;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2889,327,0 chrXV 488996 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.76;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3395,378,0 chrXV 489005 . A T 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=3.736;HaplotypeScore=8.2606;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.244;QD=21.51;ReadPosRankSum=1.710;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3355,366,0 chrXV 489227 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8077;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.30;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4147,453,0 chrXV 489293 . C T 6076.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=12.7833;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.64;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:6076,661,0 chrXV 489366 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.213;DP=185;Dels=0.00;FS=9.175;HaplotypeScore=16.1510;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.774;QD=21.76;ReadPosRankSum=3.222;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:4,180:185:99:4026,462,0 chrXV 489952 . T G 367 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.94;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:48:400,48,0 chrXV 489971 . T C 452 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.79;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:485,54,0 chrXV 490345 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2802,315,0 chrXV 490456 . G A 5831.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.14;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5831,633,0 chrXV 491189 . A G 2435 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.46;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2468,285,0 chrXV 491190 . A G 2499 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.00;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2532,282,0 chrXV 491476 . G C 3033 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.36;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3066,342,0 chrXV 491483 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.41;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3176,351,0 chrXV 492036 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.96;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,159:164:99:3438,390,0 chrXV 492191 . C G 3459.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.69;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3459,390,0 chrXV 492545 . G A 4923.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.8790;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=21.69;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4923,552,0 chrXV 492629 . G T 5354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=225;Dels=0.00;FS=3.168;HaplotypeScore=11.0159;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.619;QD=23.80;ReadPosRankSum=-1.067;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5354,584,0 chrXV 492865 . C G 3101 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3134,354,0 chrXV 493178 . G A 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.996;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-2.109;QD=23.07;ReadPosRankSum=-1.283;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3193,313,0 chrXV 493264 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8933;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.34;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3106,348,0 chrXV 493331 . A G 3009 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.69;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3042,348,0 chrXV 493349 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.06;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3450,396,0 chrXV 493377 . T G 2684 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=129.1564;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=16.88;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2717,309,0 chrXV 493415 . G C 2175 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.8167;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=17.54;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2208,249,0 chrXV 493846 . C T 4672.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.3980;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.79;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4672,534,0 chrXV 493975 . T C 5290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=240;Dels=0.00;FS=2.951;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.711;QD=22.04;ReadPosRankSum=2.409;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:5290,606,0 chrXV 494089 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=179;Dels=0.00;FS=4.698;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.323;QD=22.49;ReadPosRankSum=0.773;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4026,459,0 chrXV 494313 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.34;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3655,420,0 chrXV 494326 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.58;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3679,405,0 chrXV 494461 . G C 5003.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=19.8522;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.42;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5003,570,0 chrXV 494556 . T C 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.6430;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.379;QD=21.19;ReadPosRankSum=1.717;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4938,573,0 chrXV 494573 . C A 4867.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.98;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4867,531,0 chrXV 494732 . T C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=5.343;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.292;QD=15.88;ReadPosRankSum=1.710;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:2511,288,0 chrXV 494734 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=16.80;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2570,282,0 chrXV 494794 . G C 3111 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=16.55;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:3144,363,0 chrXV 494820 . C G 3205.99 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.33;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3239,375,0 chrXV 494956 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.13;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2888,318,0 chrXV 495340 . G A 5030.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.1021;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.40;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5030,549,0 chrXV 495462 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=202;Dels=0.00;FS=3.031;HaplotypeScore=19.0555;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.495;QD=20.63;ReadPosRankSum=2.425;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4167,471,0 chrXV 495679 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.6301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3469,390,0 chrXV 495803 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.75;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3589,396,0 chrXV 495882 . G A 4854.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.03;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4854,525,0 chrXV 495950 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=4.243;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.362;QD=21.84;ReadPosRankSum=1.713;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3909,444,0 chrXV 496083 . C T 4653.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.3514;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.14;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4653,543,0 chrXV 496163 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3726,408,0 chrXV 496422 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.56;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3033,345,0 chrXV 496482 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.12;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2879,321,0 chrXV 496659 . A T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=19.2521;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.39;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3883,432,0 chrXV 496778 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.05;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4449,489,0 chrXV 496842 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4222,480,0 chrXV 497013 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.22;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2899,330,0 chrXV 497086 . T C 1667 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.10;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1700,195,0 chrXV 497152 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.37;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:848,96,0 chrXV 497271 . A G 436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;MQRankSum=-1.011;QD=18.17;ReadPosRankSum=1.589;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:54:469,54,0 chrXV 497284 . G A 430 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=17.92;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:51:463,51,0 chrXV 497288 . G A 445 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=20.23;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:54:478,54,0 chrXV 497298 . G A 394 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=17.91;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:427,48,0 chrXV 497350 . G A 467 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.46;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:57:500,57,0 chrXV 497358 . G A 501 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.87;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:60:534,60,0 chrXV 497387 . T C 453 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.65;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:54:486,54,0 chrXV 497441 . A G 518 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.58;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:63:551,63,0 chrXV 497542 . A T 1426 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.77;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1459,165,0 chrXV 497758 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.83;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3646,411,0 chrXV 497904 . G A 4469.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.7388;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.52;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4469,489,0 chrXV 497977 . C G 4720.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.80;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4720,537,0 chrXV 498007 . A G 4852.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.9195;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.02;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4852,546,0 chrXV 498157 . A G 5693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=242;Dels=0.00;FS=3.176;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.286;QD=23.52;ReadPosRankSum=1.675;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5693,645,0 chrXV 498202 . A G 4881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.636;DP=218;Dels=0.00;FS=12.237;HaplotypeScore=13.5400;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.047;QD=22.39;ReadPosRankSum=3.715;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:5,212:218:99:4881,552,0 chrXV 498327 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.81;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3860,426,0 chrXV 498478 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=114;Dels=0.00;FS=6.710;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.077;QD=23.06;ReadPosRankSum=2.406;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2662,300,0 chrXV 498558 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3069,345,0 chrXV 498928 . T C 4127.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4127,477,0 chrXV 499156 . A G 3143 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3176,363,0 chrXV 499249 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3398,366,0 chrXV 499294 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.129;DP=136;Dels=0.00;FS=5.169;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.205;QD=20.68;ReadPosRankSum=3.247;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:4,129:136:99:2845,321,0 chrXV 499626 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4726;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.28;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3468,375,0 chrXV 499909 . A G 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.395;QD=22.51;ReadPosRankSum=1.702;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2599,294,0 chrXV 499981 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.29;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3130,339,0 chrXV 500197 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.74;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3674,414,0 chrXV 500224 . G A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.10;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3819,438,0 chrXV 500359 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3817,429,0 chrXV 500665 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.6058;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=21.75;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2904,327,0 chrXV 500878 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=106;Dels=0.00;FS=3.543;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.033;QD=21.58;ReadPosRankSum=1.699;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2320,270,0 chrXV 500968 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2868,318,0 chrXV 501040 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2556,279,0 chrXV 501220 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2598,291,0 chrXV 501319 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.11;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2819,324,0 chrXV 501355 . T C 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.102;QD=20.24;ReadPosRankSum=1.630;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2785,315,0 chrXV 501367 . A G 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=8.004;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.059;QD=20.22;ReadPosRankSum=2.416;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2965,333,0 chrXV 501502 . T G 2930 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2963,342,0 chrXV 502195 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.18;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3310,381,0 chrXV 502273 . A G 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=183;Dels=0.00;FS=2.925;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.403;QD=22.11;ReadPosRankSum=2.423;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4046,462,0 chrXV 502324 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5348;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.46;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3231,372,0 chrXV 502484 . A G 3895.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3895,453,0 chrXV 502536 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.48;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3909,444,0 chrXV 502562 . A T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.41;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4079,459,0 chrXV 503360 . T G 2083 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2116,237,0 chrXV 503779 . C T 4575.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4575,513,0 chrXV 503846 . A G 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=217;Dels=0.00;FS=3.680;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.934;QD=22.04;ReadPosRankSum=1.684;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4782,537,0 chrXV 503975 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=174;Dels=0.00;FS=4.268;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.841;QD=21.36;ReadPosRankSum=1.712;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3716,423,0 chrXV 504738 . A C 1661 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.03;FS=0.000;HaplotypeScore=7.7293;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=16.61;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1694,192,0 chrXV 504755 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.48;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1789,204,0 chrXV 504786 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.20;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1932,213,0 chrXV 505006 . A G 1807 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.78;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1840,207,0 chrXV 505083 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1978;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.23;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3048,348,0 chrXV 505109 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=6.503;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.299;QD=20.13;ReadPosRankSum=2.387;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3233,366,0 chrXV 505165 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.33;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2443,273,0 chrXV 505528 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.38;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2010,219,0 chrXV 505541 . C G 1906 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=17.49;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1939,225,0 chrXV 505622 . C G 2876 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.99;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2909,333,0 chrXV 505999 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.67;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3381,390,0 chrXV 507308 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=125;Dels=0.00;FS=8.532;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.462;QD=21.07;ReadPosRankSum=2.329;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2667,312,0 chrXV 507811 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2403,267,0 chrXV 508404 . A C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=131;Dels=0.00;FS=3.658;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=22.16;ReadPosRankSum=1.705;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2936,336,0 chrXV 508781 . A G 4857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=234;Dels=0.00;FS=5.150;HaplotypeScore=14.7884;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.034;QD=20.76;ReadPosRankSum=3.394;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:4857,558,0 chrXV 508852 . G T 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.268;DP=238;Dels=0.00;FS=2.876;HaplotypeScore=16.1836;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.257;QD=21.19;ReadPosRankSum=-0.435;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,232:238:99:5044,514,0 chrXV 509207 . T C 4414.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7917;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.35;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4414,504,0 chrXV 509642 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.1774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.86;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3979,450,0 chrXV 509814 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.60;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3493,378,0 chrXV 509952 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=4.017;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.672;QD=22.78;ReadPosRankSum=1.702;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2698,318,0 chrXV 510165 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.033;QD=23.41;ReadPosRankSum=1.703;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2819,318,0 chrXV 510382 . A G 2235 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2268,258,0 chrXV 510495 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.1653;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.07;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3435,381,0 chrXV 510586 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2272,252,0 chrXV 510696 . G T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.57;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3656,408,0 chrXV 511001 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.47;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3797,414,0 chrXV 511101 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.0355;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4139,450,0 chrXV 511376 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.09;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2794,309,0 chrXV 511394 . G T 2425 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=20.55;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2458,282,0 chrXV 511438 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=16.07;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1817,207,0 chrXV 511443 . T C 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=-0.490;QD=17.37;ReadPosRankSum=1.699;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1874,213,0 chrXV 511466 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.35;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1374,159,0 chrXV 511476 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=16.94;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1422,156,0 chrXV 512726 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.48;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3874,429,0 chrXV 512989 . C A 1822 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.95;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1855,207,0 chrXV 513009 . A G 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.083;QD=19.62;ReadPosRankSum=1.678;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1289,150,0 chrXV 513070 . G A 400 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.39;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,22:23:48:433,48,0 chrXV 513625 . T C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.047;DP=157;Dels=0.00;FS=16.402;HaplotypeScore=5.4764;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.139;QD=17.20;ReadPosRankSum=2.958;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:2734,315,0 chrXV 513637 . A T 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-1.732;QD=18.06;ReadPosRankSum=1.711;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2941,327,0 chrXV 514366 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.06;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3633,405,0 chrXV 514405 . G T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.97;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3630,396,0 chrXV 514625 . C T 4886.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.68;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4886,531,0 chrXV 514715 . T C 4912.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.8006;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.17;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:4912,570,0 chrXV 514804 . G T 2705 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.49;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2738,315,0 chrXV 514962 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=11.9896;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=16.16;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1342,153,0 chrXV 515380 . C G 5000.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5000,579,0 chrXV 516270 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.20;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3285,357,0 chrXV 517216 . T C 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=145;Dels=0.00;FS=3.552;HaplotypeScore=17.7874;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.111;QD=20.33;ReadPosRankSum=1.708;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2981,339,0 chrXV 517314 . C A 2532 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.61;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2565,282,0 chrXV 518019 . T C 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=214;Dels=0.00;FS=5.290;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.472;QD=21.38;ReadPosRankSum=1.716;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4576,522,0 chrXV 518151 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.883;QD=22.87;ReadPosRankSum=1.710;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3591,405,0 chrXV 518743 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2326,264,0 chrXV 518802 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.344;QD=23.12;ReadPosRankSum=1.700;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2507,285,0 chrXV 519037 . A C 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.338;QD=19.08;ReadPosRankSum=1.693;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1731,201,0 chrXV 519048 . T A 1855 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.9907;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.74;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1888,207,0 chrXV 519432 . C T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0588;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.34;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4088,450,0 chrXV 519516 . C G 3097 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.36;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3130,360,0 chrXV 519651 . A G 4891.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.08;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4891,555,0 chrXV 519658 . G A 4854.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.9438;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.48;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4854,522,0 chrXV 520009 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.45;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4221,474,0 chrXV 520129 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.86;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2285,252,0 chrXV 520142 . G C 2196 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.91;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2229,255,0 chrXV 520264 . T A 2555 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=23.23;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2588,282,0 chrXV 520292 . T C 2423 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.53;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2456,285,0 chrXV 520321 . C G 1715 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=16.18;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1748,204,0 chrXV 520326 . G C 1769 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=16.53;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1802,210,0 chrXV 520372 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.25;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2305,264,0 chrXV 520499 . A T 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=3.330;HaplotypeScore=7.8483;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-0.750;QD=18.27;ReadPosRankSum=1.705;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2353,261,0 chrXV 520515 . T G 2137 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=104.3133;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=15.95;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2170,255,0 chrXV 520568 . A G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=160;Dels=0.00;FS=7.342;HaplotypeScore=19.5700;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.146;QD=17.67;ReadPosRankSum=2.419;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2860,327,0 chrXV 520650 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=2.682;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.574;QD=19.51;ReadPosRankSum=2.391;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3298,375,0 chrXV 520667 . G T 3171 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.76;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3204,357,0 chrXV 520674 . C A 3022 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=16.79;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3055,348,0 chrXV 520701 . A T 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=180;Dels=0.00;FS=8.368;HaplotypeScore=11.0159;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-1.467;QD=16.61;ReadPosRankSum=2.422;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3023,345,0 chrXV 520826 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.17;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2667,306,0 chrXV 521084 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2095,237,0 chrXV 521161 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.80;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3285,348,0 chrXV 521442 . G C 2998 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3031,345,0 chrXV 521727 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=172;Dels=0.00;FS=8.927;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.516;QD=21.57;ReadPosRankSum=3.286;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:4,167:172:99:3710,429,0 chrXV 521859 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=3.551;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-1.198;QD=18.69;ReadPosRankSum=1.695;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3532,411,0 chrXV 521864 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=1.013;QD=19.30;ReadPosRankSum=1.382;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3628,399,0 chrXV 521934 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=165;Dels=0.00;FS=6.597;HaplotypeScore=11.8281;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.131;QD=21.38;ReadPosRankSum=2.420;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3528,402,0 chrXV 522066 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.69;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2785,318,0 chrXV 522233 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.02;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3503,375,0 chrXV 522596 . T C 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.118;QD=24.04;ReadPosRankSum=1.698;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2533,288,0 chrXV 522888 . C T 2448 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.54;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2481,279,0 chrXV 523000 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.50;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2383,267,0 chrXV 523213 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.49;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3046,330,0 chrXV 523506 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.36;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3589,402,0 chrXV 523527 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.16;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3548,402,0 chrXV 523989 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.14;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4144,486,0 chrXV 524711 . T A 2350 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.36;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2383,258,0 chrXV 525016 . T C 1758 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1791,201,0 chrXV 525568 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=3.550;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.607;QD=21.42;ReadPosRankSum=1.687;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1682,195,0 chrXV 525601 . T C 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.594;QD=21.85;ReadPosRankSum=2.372;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2109,240,0 chrXV 525838 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=188;Dels=0.00;FS=5.132;HaplotypeScore=7.8983;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.211;QD=20.51;ReadPosRankSum=3.366;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:4,182:188:99:3855,435,0 chrXV 525850 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=190;Dels=0.00;FS=4.865;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.195;QD=21.18;ReadPosRankSum=1.658;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4025,456,0 chrXV 525919 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=3.946;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.725;QD=20.70;ReadPosRankSum=1.714;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4077,477,0 chrXV 526210 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2745,303,0 chrXV 526390 . T C 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.425;QD=22.89;ReadPosRankSum=1.688;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1841,210,0 chrXV 527323 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.66;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3823,441,0 chrXV 528085 . G T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.08;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3290,366,0 chrXV 528477 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.18;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2673,303,0 chrXV 528487 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.96;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2427,270,0 chrXV 529292 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.2357;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.54;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3899,462,0 chrXV 529542 . G C 3126 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.56;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3159,360,0 chrXV 529675 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.72;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4153,456,0 chrXV 529807 . G C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.7368;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.58;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3301,381,0 chrXV 530986 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.65;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3291,351,0 chrXV 530989 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.89;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2996,339,0 chrXV 531055 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.104;QD=20.03;ReadPosRankSum=1.709;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3037,345,0 chrXV 531379 . T C 914 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.65;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:947,108,0 chrXV 532110 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.44;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2703,294,0 chrXV 532911 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.12;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3306,366,0 chrXV 533224 . A G 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.780;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.133;QD=22.17;ReadPosRankSum=1.643;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2627,306,0 chrXV 533398 . A C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.928;QD=19.70;ReadPosRankSum=1.701;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2279,258,0 chrXV 533423 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.45;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2282,249,0 chrXV 533487 . T C 2981 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.93;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3014,348,0 chrXV 533520 . A G 3159 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.89;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3192,372,0 chrXV 533636 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=138.6937;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=0.307;QD=20.97;ReadPosRankSum=1.710;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3313,369,0 chrXV 533847 . C A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.54;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3606,408,0 chrXV 533983 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.20;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3295,372,0 chrXV 534085 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.27;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2951,333,0 chrXV 534200 . T A 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.274;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5546;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.707;QD=21.92;ReadPosRankSum=1.656;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3014,336,0 chrXV 536230 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2575,279,0 chrXV 538230 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.97;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3610,390,0 chrXV 538378 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=23.72;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3274,369,0 chrXV 539133 . C T 4774.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.52;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4774,534,0 chrXV 539181 . T C 5506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=233;Dels=0.00;FS=2.507;HaplotypeScore=14.4780;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.606;QD=23.63;ReadPosRankSum=2.831;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,229:233:99:5506,630,0 chrXV 539609 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1930,219,0 chrXV 541437 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4147,468,0 chrXV 541939 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.683;QD=22.10;ReadPosRankSum=1.712;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3867,450,0 chrXV 542199 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=19.5633;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.99;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4001,447,0 chrXV 542472 . T G 3523.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.75;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3523,405,0 chrXV 542699 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.622;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.624;QD=23.36;ReadPosRankSum=1.712;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4112,471,0 chrXV 542841 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.392;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.294;QD=21.24;ReadPosRankSum=1.677;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4056,456,0 chrXV 542889 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.38;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3938,450,0 chrXV 542952 . A G 4024.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3166;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.36;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4024,476,0 chrXV 543498 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=146;Dels=0.00;FS=3.040;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;MQRankSum=-1.338;QD=22.41;ReadPosRankSum=2.416;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3272,372,0 chrXV 543780 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=184;Dels=0.00;FS=3.034;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.007;QD=21.11;ReadPosRankSum=2.410;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3884,441,0 chrXV 544461 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.358;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=1.441;QD=23.87;ReadPosRankSum=1.708;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3414,390,0 chrXV 544509 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.59;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2947,330,0 chrXV 544647 . A G 2596 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.77;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2629,300,0 chrXV 544675 . A T 2446 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.24;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2479,285,0 chrXV 544718 . C A 2393 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=22.79;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2426,267,0 chrXV 544722 . A G 2173 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=20.12;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2206,255,0 chrXV 544812 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.12;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2080,234,0 chrXV 544813 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=17.88;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2071,234,0 chrXV 544924 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=19.03;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2126,237,0 chrXV 544940 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=16.33;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1829,210,0 chrXV 544949 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=16.77;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1844,210,0 chrXV 544976 . T G 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;MQRankSum=-1.703;QD=13.90;ReadPosRankSum=1.703;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1659,192,0 chrXV 544982 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=14.15;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1774,201,0 chrXV 545061 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4460;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.719;QD=23.54;ReadPosRankSum=1.705;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3117,354,0 chrXV 545170 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=180;Dels=0.00;FS=5.559;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.039;QD=22.10;ReadPosRankSum=2.916;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:3978,453,0 chrXV 545340 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.57;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3837,441,0 chrXV 546162 . A G 2570 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.531;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.084;QD=20.73;ReadPosRankSum=1.704;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2603,294,0 chrXV 546163 . C T 2624 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.33;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2657,291,0 chrXV 546165 . T A 2532 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.42;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2565,294,0 chrXV 546393 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.27;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2161,240,0 chrXV 546837 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2407,261,0 chrXV 547266 . C G 4058.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.59;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4058,456,0 chrXV 547477 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2659,309,0 chrXV 547969 . A G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.042;QD=23.31;ReadPosRankSum=1.704;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2900,330,0 chrXV 548086 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.66;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3112,354,0 chrXV 548158 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.10;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2386,267,0 chrXV 548170 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=120;Dels=0.00;FS=2.591;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.471;QD=15.92;ReadPosRankSum=2.942;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:3,117:120:99:1943,225,0 chrXV 548173 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=16.26;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2017,231,0 chrXV 548227 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=16.59;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2074,234,0 chrXV 548302 . T G 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.430;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.577;QD=20.54;ReadPosRankSum=1.708;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2949,336,0 chrXV 548428 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=24.42;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3687,414,0 chrXV 548602 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.68;MQ0=0;QD=20.78;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2651,300,0 chrXV 548673 . C A 1727 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1760,198,0 chrXV 548775 . A G 2026 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.29;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2059,240,0 chrXV 548995 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.42;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2282,249,0 chrXV 549059 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.83;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3493,387,0 chrXV 549127 . G A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.70;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3754,411,0 chrXV 549314 . C T 2326 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2359,261,0 chrXV 549551 . T C 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.291;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.758;QD=22.54;ReadPosRankSum=1.651;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2918,327,0 chrXV 549794 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2588,297,0 chrXV 549932 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.60;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2474,273,0 chrXV 550085 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.2792;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.88;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2439,276,0 chrXV 550196 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.33;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2459,273,0 chrXV 550328 . T C 1888 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.45;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1921,219,0 chrXV 550382 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.96;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1998,216,0 chrXV 550436 . A G 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.538;QD=21.86;ReadPosRankSum=1.613;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1323,150,0 chrXV 550493 . G C 918 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=15.05;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:951,108,0 chrXV 550501 . G A 752 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=14.19;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:785,90,0 chrXV 550623 . T C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.2629;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.699;QD=17.14;ReadPosRankSum=1.593;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2313,267,0 chrXV 550695 . A C 2471 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.06;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2504,288,0 chrXV 550804 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=3.163;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=1.095;QD=19.01;ReadPosRankSum=1.672;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3326,381,0 chrXV 550812 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.97;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3471,399,0 chrXV 551128 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=175;Dels=0.00;FS=8.022;HaplotypeScore=15.8622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.214;QD=22.32;ReadPosRankSum=2.407;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:3906,450,0 chrXV 551234 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4409,498,0 chrXV 551437 . A G 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=21.0275;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.978;QD=21.49;ReadPosRankSum=1.715;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4383,504,0 chrXV 551813 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.4052;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.31;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4011,435,0 chrXV 552117 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2836,324,0 chrXV 553236 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=4.039;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.119;QD=20.78;ReadPosRankSum=1.709;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3087,357,0 chrXV 553518 . T G 3112 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3145,369,0 chrXV 554715 . T C 2998 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.3562;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=15.37;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3031,354,0 chrXV 554820 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.03;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3754,429,0 chrXV 554987 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.3500;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.91;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4009,444,0 chrXV 556316 . T C 2548 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.9208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.78;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2581,291,0 chrXV 558128 . T A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.21;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3366,360,0 chrXV 558487 . A G 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.659;QD=21.20;ReadPosRankSum=1.708;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3044,351,0 chrXV 558497 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.57;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2945,324,0 chrXV 559459 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=210;Dels=0.00;FS=3.491;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.181;QD=22.38;ReadPosRankSum=1.683;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4699,543,0 chrXV 559477 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=221;Dels=0.00;FS=3.720;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.068;QD=21.68;ReadPosRankSum=1.716;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:4792,549,0 chrXV 559768 . T G 1918 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1951,222,0 chrXV 560108 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.81;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3643,399,0 chrXV 560585 . A G 5055.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.62;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5055,564,0 chrXV 560610 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=9.269;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.451;QD=23.09;ReadPosRankSum=2.410;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4340,489,0 chrXV 560807 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.678;DP=139;Dels=0.00;FS=4.917;HaplotypeScore=29.7526;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.615;QD=12.68;ReadPosRankSum=3.042;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:5,134:139:99:1795,210,0 chrXV 561106 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.21;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3390,366,0 chrXV 561454 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=190;Dels=0.00;FS=3.320;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.119;QD=21.29;ReadPosRankSum=1.677;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4046,462,0 chrXV 561754 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.10;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3925,435,0 chrXV 561757 . T C 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.904;QD=20.10;ReadPosRankSum=1.694;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3718,435,0 chrXV 562162 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2805,306,0 chrXV 562241 . C A 3138 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3171,354,0 chrXV 562357 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3714,402,0 chrXV 562412 . A T 2885 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2918,318,0 chrXV 562468 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3266,372,0 chrXV 562630 . C T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3318,363,0 chrXV 562672 . G C 3803.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.50;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3803,441,0 chrXV 562729 . G A 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=158;Dels=0.00;FS=2.609;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.575;QD=22.92;ReadPosRankSum=1.221;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3622,370,0 chrXV 562990 . G T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.06;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3331,372,0 chrXV 563008 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.09;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3046,330,0 chrXV 563142 . A C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.941;QD=21.03;ReadPosRankSum=1.657;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1968,225,0 chrXV 563734 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.93;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2945,327,0 chrXV 563766 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.70;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3093,351,0 chrXV 563779 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.12;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2805,324,0 chrXV 564207 . T G 3456.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.20;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3456,399,0 chrXV 564208 . C A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.86;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3681,396,0 chrXV 564299 . G C 2134 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.52;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2167,252,0 chrXV 564451 . A G 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.762;QD=19.73;ReadPosRankSum=1.663;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2045,237,0 chrXV 564575 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.69;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3193,354,0 chrXV 565891 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.6868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.476;QD=23.04;ReadPosRankSum=1.662;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3433,396,0 chrXV 566126 . T A 3050 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.47;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3083,351,0 chrXV 566165 . T C 2801 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.06;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2834,318,0 chrXV 566210 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.577;QD=21.53;ReadPosRankSum=1.709;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3220,360,0 chrXV 566353 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=24.56;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2464,264,0 chrXV 566373 . A C 2286 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.19;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2319,261,0 chrXV 566430 . G T 2351 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.37;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2384,255,0 chrXV 566502 . A G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=99;Dels=0.00;FS=2.659;HaplotypeScore=8.7942;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.018;QD=22.15;ReadPosRankSum=2.400;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2226,258,0 chrXV 566564 . A C 1589 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.91;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1622,192,0 chrXV 566628 . T C 1784 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.49;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1817,204,0 chrXV 567018 . G A 4346.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.2541;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4346,498,0 chrXV 568029 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2846,306,0 chrXV 568462 . A T 2129 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8281;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.67;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2162,231,0 chrXV 568494 . A G 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=92;Dels=0.00;FS=2.610;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.550;QD=20.70;ReadPosRankSum=1.495;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:3,89:92:99:1937,222,0 chrXV 568761 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.06;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3261,366,0 chrXV 569110 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=166;Dels=0.00;FS=6.998;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.320;QD=21.90;ReadPosRankSum=2.405;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3635,411,0 chrXV 569770 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.61;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2972,330,0 chrXV 569831 . G T 2924 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.39;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2957,327,0 chrXV 570373 . A T 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.265;QD=21.40;ReadPosRankSum=2.417;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3274,363,0 chrXV 570484 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.47;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2584,282,0 chrXV 570759 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=129;Dels=0.00;FS=7.292;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.420;QD=21.72;ReadPosRankSum=2.412;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2835,318,0 chrXV 571108 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7875;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.10;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4365,474,0 chrXV 571165 . C T 5305.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.87;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5305,574,0 chrXV 571256 . A C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=153;Dels=0.00;FS=2.575;HaplotypeScore=12.9501;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.046;QD=21.59;ReadPosRankSum=2.941;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3303,372,0 chrXV 571487 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=19.14;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1430,162,0 chrXV 571716 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=23.03;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2336,264,0 chrXV 571905 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.00;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2217,252,0 chrXV 571945 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=25.33;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2085,231,0 chrXV 572041 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=15.93;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:957,108,0 chrXV 572098 . G A 1271 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=16.29;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1304,141,0 chrXV 572101 . A C 1214 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.922;QD=15.77;ReadPosRankSum=1.687;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1247,141,0 chrXV 572102 . C T 1249 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=16.65;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1282,141,0 chrXV 572107 . T G 1182 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=15.55;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1215,138,0 chrXV 572407 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.94;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2965,339,0 chrXV 572419 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.22;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3437,393,0 chrXV 572520 . C G 2653 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2686,312,0 chrXV 573068 . T A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.27;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3700,402,0 chrXV 573127 . T C 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.274;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=22.1602;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.248;QD=22.29;ReadPosRankSum=0.414;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4325,492,0 chrXV 573228 . T C 5556.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.21;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5556,639,0 chrXV 573248 . A G 5132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=243;Dels=0.00;FS=8.336;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.431;QD=21.12;ReadPosRankSum=2.419;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5132,585,0 chrXV 573324 . A T 5804.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.12;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5804,648,0 chrXV 573358 . A G 6083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=281;Dels=0.00;FS=2.811;HaplotypeScore=9.9471;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.991;QD=21.65;ReadPosRankSum=2.406;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:2,279:281:99:6083,699,0 chrXV 573377 . A G 5467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=273;Dels=0.00;FS=2.622;HaplotypeScore=3.1136;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.355;QD=20.03;ReadPosRankSum=2.387;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:5467,621,0 chrXV 573378 . A G 5542.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=2.3683;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.30;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5542,627,0 chrXV 573534 . T C 3928.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.35;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3928,459,0 chrXV 573819 . A G 2990 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.65;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3023,345,0 chrXV 574266 . A T 6038.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.3603;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=23.87;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6038,657,0 chrXV 574378 . G A 4829.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.89;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4829,528,0 chrXV 574716 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.70;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2634,297,0 chrXV 575193 . G A 1013 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.36;MQ0=95;QD=6.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:43,103:147:99:1046,117,0 chrXV 577212 . C T 2151 filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=85;QD=11.50;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:2184,249,0 chrXV 577326 . C T 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DP=170;Dels=0.00;FS=39.645;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=12.52;MQ0=117;MQRankSum=-2.707;QD=0.62;ReadPosRankSum=2.798;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,68:170:99:135,0,377 chrXV 577407 . C T 1950.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.796;DP=197;Dels=0.00;FS=212.034;HaplotypeScore=7.4767;MLEAC=1;MLEAF=0.500;MQ=36.71;MQ0=51;MQRankSum=3.245;QD=9.90;ReadPosRankSum=-0.435;SB=-2.740e+02 GT:AD:DP:GQ:PL 0/1:75,122:197:99:1980,0,460 chrXV 577503 . C T 2212 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=39;QD=13.49;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2245,255,0 chrXV 577509 . A G 2015 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=162;Dels=0.00;FS=13.372;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.78;MQ0=45;MQRankSum=-0.652;QD=12.44;ReadPosRankSum=3.352;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:2048,234,0 chrXV 577827 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.05;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.88;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1893,207,0 chrXV 577890 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.58;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1781,195,0 chrXV 578388 . T C 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.304;QD=21.54;ReadPosRankSum=1.696;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2122,246,0 chrXV 578881 . T G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.09;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3371,390,0 chrXV 578915 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.9180;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.87;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3189,354,0 chrXV 578986 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=158;Dels=0.00;FS=4.195;HaplotypeScore=12.9109;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.486;QD=21.20;ReadPosRankSum=1.710;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3349,381,0 chrXV 579028 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.17;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3414,381,0 chrXV 580206 . A G 600 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.00;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:72:633,72,0 chrXV 580333 . C G 2230 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.23;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2263,252,0 chrXV 580351 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.68;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2223,246,0 chrXV 580729 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.81;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3821,423,0 chrXV 580876 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=192;Dels=0.00;FS=8.220;HaplotypeScore=13.7538;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.278;QD=22.74;ReadPosRankSum=3.414;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:4367,492,0 chrXV 581450 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.66;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1506,171,0 chrXV 581863 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.54;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2485,270,0 chrXV 582005 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.38;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3508,381,0 chrXV 582071 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5264;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.34;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3617,396,0 chrXV 582149 . T C 3117 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.78;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3150,363,0 chrXV 582404 . T C 2190 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.47;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2223,249,0 chrXV 582590 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.51;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2656,294,0 chrXV 582656 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=107;Dels=0.00;FS=8.534;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.012;QD=21.98;ReadPosRankSum=2.403;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2385,282,0 chrXV 582812 . G C 1837 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.36;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1870,213,0 chrXV 583442 . A T 2585 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.16;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2618,291,0 chrXV 583749 . A C 2054 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.34;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2087,237,0 chrXV 583902 . C G 1961 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1994,231,0 chrXV 583999 . A C 2024 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.26;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2057,231,0 chrXV 584081 . T C 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=82;Dels=0.00;FS=2.699;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.316;QD=23.70;ReadPosRankSum=2.390;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1976,225,0 chrXV 584518 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.00;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3141,357,0 chrXV 584870 . G A 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.234;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.354;QD=21.19;ReadPosRankSum=-1.445;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4852,540,0 chrXV 585188 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=161;Dels=0.00;FS=3.004;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.682;QD=21.18;ReadPosRankSum=2.404;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3410,387,0 chrXV 585314 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.04;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3487,396,0 chrXV 585323 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=177;Dels=0.00;FS=2.919;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.187;QD=20.35;ReadPosRankSum=2.408;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3602,411,0 chrXV 585644 . T C 5643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.016;QD=20.52;ReadPosRankSum=1.719;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:1,270:275:99:5643,645,0 chrXV 585683 . T C 5236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=307;Dels=0.00;FS=6.355;HaplotypeScore=18.8213;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.318;QD=17.06;ReadPosRankSum=2.425;SB=-3.660e+03 GT:AD:DP:GQ:PL 1/1:2,304:307:99:5236,594,0 chrXV 585698 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=285;Dels=0.00;FS=3.072;HaplotypeScore=3.8227;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-1.167;QD=16.82;ReadPosRankSum=1.634;SB=-3.513e+03 GT:AD:DP:GQ:PL 1/1:1,281:285:99:4793,555,0 chrXV 585808 . T C 5532.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.1794;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.13;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5532,642,0 chrXV 586076 . A T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.24;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3959,438,0 chrXV 586304 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=173;Dels=0.00;FS=8.681;HaplotypeScore=12.2051;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-2.350;QD=20.80;ReadPosRankSum=2.379;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3599,411,0 chrXV 586345 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=196;Dels=0.00;FS=7.405;HaplotypeScore=13.6996;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.462;QD=22.13;ReadPosRankSum=2.374;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4338,495,0 chrXV 586852 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.35;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2123,237,0 chrXV 586872 . T C 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=3.274;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.684;QD=19.39;ReadPosRankSum=1.703;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2340,264,0 chrXV 586907 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.7720;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.63;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2901,321,0 chrXV 587142 . A G 2663 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=17.99;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2696,312,0 chrXV 587196 . T A 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=242;Dels=0.00;FS=3.026;HaplotypeScore=5.8286;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=1.304;QD=15.82;ReadPosRankSum=1.263;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:3829,419,0 chrXV 587206 . G A 3904.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.3763;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.81;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:3904,441,0 chrXV 587265 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.0762;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.628;QD=18.80;ReadPosRankSum=1.702;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4381,507,0 chrXV 587316 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.15;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3633,414,0 chrXV 587565 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.06;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3188,363,0 chrXV 588022 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.33;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3850,426,0 chrXV 588171 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=18.3370;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.22;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:0,246:250:99:4806,540,0 chrXV 588504 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=200;Dels=0.00;FS=3.716;HaplotypeScore=11.1594;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.472;QD=19.25;ReadPosRankSum=-0.017;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3850,410,0 chrXV 588536 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.083;DP=193;Dels=0.00;FS=7.360;HaplotypeScore=16.2286;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.490;QD=15.60;ReadPosRankSum=0.414;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3044,324,0 chrXV 588756 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.88;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3500,396,0 chrXV 588780 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.78;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2782,321,0 chrXV 588933 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=160;Dels=0.00;FS=3.009;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.750;QD=19.34;ReadPosRankSum=2.419;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3128,354,0 chrXV 589132 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-1.024;QD=20.95;ReadPosRankSum=1.707;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2903,336,0 chrXV 589146 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=19.74;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2619,300,0 chrXV 589155 . T G 2317 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.80;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2350,273,0 chrXV 589303 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2519,276,0 chrXV 589700 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.09;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1996,222,0 chrXV 589839 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.00;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1833,201,0 chrXV 590260 . A T 2629 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.09;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2662,291,0 chrXV 590710 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.55;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3165,345,0 chrXV 590749 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.4406;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.07;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3123,345,0 chrXV 591118 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.27;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2885,318,0 chrXV 591121 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.49;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2788,318,0 chrXV 591202 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.3384;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.67;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3381,375,0 chrXV 591337 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.33;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2486,279,0 chrXV 591532 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2119,234,0 chrXV 591684 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.28;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3278,360,0 chrXV 591787 . T A 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.874;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.994;QD=21.30;ReadPosRankSum=1.675;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2632,297,0 chrXV 591904 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5090;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.42;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2483,282,0 chrXV 592027 . T C 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=104;Dels=0.00;FS=2.993;HaplotypeScore=8.4170;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.181;QD=20.12;ReadPosRankSum=2.401;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,100:104:99:2125,252,0 chrXV 592237 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.40;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3434,378,0 chrXV 592238 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.08;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3416,375,0 chrXV 592385 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.0572;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=1;MQRankSum=-0.720;QD=21.79;ReadPosRankSum=-1.210;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4794,506,0 chrXV 592588 . G A 5126.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=19.1460;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.63;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5126,582,0 chrXV 592731 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.55;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3788,408,0 chrXV 592827 . A T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.16;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3721,408,0 chrXV 592863 . T G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8124;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.03;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3478,393,0 chrXV 592970 . T C 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=129;Dels=0.00;FS=3.714;HaplotypeScore=12.4510;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.341;QD=20.67;ReadPosRankSum=1.623;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2699,312,0 chrXV 593587 . A G 2436 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2469,279,0 chrXV 594122 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.38;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1693,186,0 chrXV 594267 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=21.95;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1372,156,0 chrXV 594290 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=20.31;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1292,150,0 chrXV 594439 . T A 1324 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;QD=21.02;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1357,162,0 chrXV 594441 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;QD=21.59;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1393,162,0 chrXV 594454 . C G 1154 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.94;MQ0=0;QD=20.98;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1187,144,0 chrXV 594455 . G C 1204 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=21.50;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1237,147,0 chrXV 594490 . A G 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.775;DP=54;Dels=0.00;FS=2.989;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=-2.417;QD=20.67;ReadPosRankSum=1.020;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:94:1149,94,0 chrXV 594499 . G C 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.166;DP=52;Dels=0.00;FS=4.551;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.30;MQ0=0;MQRankSum=-2.022;QD=20.44;ReadPosRankSum=-0.738;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:88:1096,88,0 chrXV 594557 . C T 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=71;Dels=0.00;FS=6.636;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=-1.392;QD=19.15;ReadPosRankSum=1.816;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:2,68:71:99:1393,115,0 chrXV 594578 . C T 1171 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=20.54;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1204,141,0 chrXV 594586 . G A 1016 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=20.32;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1049,120,0 chrXV 594684 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=5.62;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,2:3:6:48,6,0 chrXV 594720 . A C 99.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.01;MQ0=0;QD=14.18;SB=-7.430e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:132,15,0 chrXV 594737 . C T 245 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=18.85;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:30:278,30,0 chrXV 594739 . C T 254 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=19.54;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:30:287,30,0 chrXV 600564 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.83;MQ0=52;QD=0.60;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:52,23:75:9:77,9,0 chrXV 600572 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.33;MQ0=57;QD=0.60;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:56,23:80:9:80,9,0 chrXV 600575 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.42;MQ0=56;QD=0.61;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:56,23:79:9:80,9,0 chrXV 600576 . T G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.42;MQ0=56;QD=0.61;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:55,23:79:9:80,9,0 chrXV 600580 . G A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.62;MQ0=54;QD=0.64;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:53,23:77:9:81,9,0 chrXV 600588 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.05;MQ0=60;QD=0.58;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:60,23:83:9:80,9,0 chrXV 600591 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.27;MQ0=63;QD=0.57;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:63,21:84:9:80,9,0 chrXV 600597 . G T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.59;MQ0=64;QD=0.59;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:63,19:82:9:80,9,0 chrXV 600611 . A C 130.13 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.31;MQ0=59;QD=1.67;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:58,20:78:18:163,18,0 chrXV 600618 . A T 134.13 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.86;MQ0=59;QD=1.68;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:55,21:80:18:167,18,0 chrXV 600630 . C T 129.13 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.77;MQ0=55;QD=1.82;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:54,16:71:18:162,18,0 chrXV 600811 . C G 787 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=19.67;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:820,96,0 chrXV 600898 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.05;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1422,159,0 chrXV 600978 . G C 1407 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.32;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1440,162,0 chrXV 600980 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.91;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1347,150,0 chrXV 601015 . G A 1127 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.48;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1160,135,0 chrXV 601255 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.56;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1585,180,0 chrXV 601307 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.08;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1426,153,0 chrXV 601325 . C G 1573 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.2065;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=17.29;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1606,186,0 chrXV 601569 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.69;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2869,318,0 chrXV 601761 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=174;Dels=0.00;FS=11.977;HaplotypeScore=3.0520;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.584;QD=22.20;ReadPosRankSum=2.937;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3863,438,0 chrXV 601770 . T A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.64;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3700,432,0 chrXV 601911 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.235;QD=22.01;ReadPosRankSum=2.419;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3588,408,0 chrXV 602229 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=23.84;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2655,291,0 chrXV 602238 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.98;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2561,276,0 chrXV 602250 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.77;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2526,276,0 chrXV 602416 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.24;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2035,231,0 chrXV 602578 . A G 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=110;Dels=0.00;FS=3.041;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.689;QD=22.67;ReadPosRankSum=2.405;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2527,288,0 chrXV 602638 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.2902;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.91;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2851,315,0 chrXV 603166 . A T 2042 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.63;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2075,231,0 chrXV 603179 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.69;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2123,231,0 chrXV 603257 . C G 2940 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.11;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2973,333,0 chrXV 603266 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.30;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2866,318,0 chrXV 603325 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.13;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2526,279,0 chrXV 603549 . T C 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=128;Dels=0.00;FS=6.767;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.163;QD=23.03;ReadPosRankSum=2.411;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2981,336,0 chrXV 603992 . A G 2887 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2920,333,0 chrXV 604119 . C G 2882 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.00;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2915,330,0 chrXV 604154 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.42;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2836,318,0 chrXV 604256 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.9993;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.62;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3330,375,0 chrXV 604413 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.72;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3419,387,0 chrXV 604415 . C G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.73;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3275,378,0 chrXV 604515 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.8082;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.40;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3215,351,0 chrXV 604572 . A T 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=167;Dels=0.00;FS=2.848;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.257;QD=21.89;ReadPosRankSum=2.391;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3656,417,0 chrXV 604649 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.84;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3357,375,0 chrXV 604762 . G C 3854.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.0016;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.94;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3854,438,0 chrXV 604804 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.9902;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.732;QD=23.11;ReadPosRankSum=1.191;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3698,398,0 chrXV 605119 . T A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.8198;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.53;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4033,441,0 chrXV 606232 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.69;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3411,381,0 chrXV 606849 . G T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.44;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3950,447,0 chrXV 606886 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.6899;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.26;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3699,408,0 chrXV 606997 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3088,333,0 chrXV 607151 . G C 2928 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.42;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2961,333,0 chrXV 607260 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.01;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2092,240,0 chrXV 607371 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=4.175;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.291;QD=21.19;ReadPosRankSum=1.698;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2194,252,0 chrXV 607392 . A T 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=97;Dels=0.00;FS=3.018;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.571;QD=21.75;ReadPosRankSum=2.348;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2143,234,0 chrXV 608818 . T A 2236 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.04;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2269,252,0 chrXV 608958 . A G 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.072;QD=21.22;ReadPosRankSum=1.666;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2261,264,0 chrXV 609108 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.90;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2039,234,0 chrXV 609162 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.27;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2037,225,0 chrXV 609276 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.47;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2826,309,0 chrXV 609344 . G T 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=0.328;QD=21.39;ReadPosRankSum=-1.451;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3198,340,0 chrXV 609537 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=23.22;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3098,336,0 chrXV 609553 . C A 2762 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.08;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2795,309,0 chrXV 609608 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=20.21;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2175,246,0 chrXV 609836 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.149;QD=23.66;ReadPosRankSum=1.709;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3573,408,0 chrXV 609993 . T C 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=185;Dels=0.00;FS=2.782;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.339;QD=22.41;ReadPosRankSum=2.410;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4146,483,0 chrXV 610269 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.98;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4159,453,0 chrXV 610300 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.59;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3907,459,0 chrXV 610420 . C A 4341.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4341,474,0 chrXV 610454 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.161;DP=172;Dels=0.00;FS=6.468;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.397;QD=22.03;ReadPosRankSum=2.377;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:3790,441,0 chrXV 610496 . G T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.93;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3637,399,0 chrXV 610549 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.60;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2841,306,0 chrXV 610554 . C G 2620 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.65;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2653,297,0 chrXV 610660 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.12;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2206,246,0 chrXV 610704 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.44;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2220,249,0 chrXV 610864 . A G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=70;Dels=0.00;FS=8.710;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.957;QD=20.69;ReadPosRankSum=2.380;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1481,171,0 chrXV 610882 . A C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=81;Dels=0.00;FS=4.063;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.469;QD=19.16;ReadPosRankSum=1.644;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1585,180,0 chrXV 611686 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.6581;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.88;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4394,501,0 chrXV 612123 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3466,384,0 chrXV 612840 . G A 1311 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.60;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1344,153,0 chrXV 612869 . C T 1603 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.57;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1636,174,0 chrXV 613660 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.7318;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.82;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4019,459,0 chrXV 614674 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5974;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.352;QD=19.41;ReadPosRankSum=2.363;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3339,384,0 chrXV 614917 . A C 4389.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.62;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4389,507,0 chrXV 614998 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0818;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.35;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3554,399,0 chrXV 615019 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.3381;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.17;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3536,393,0 chrXV 615172 . G A 4304.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.50;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4304,474,0 chrXV 615175 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=203;Dels=0.00;FS=5.916;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.995;QD=19.18;ReadPosRankSum=2.965;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:3,198:203:99:3894,459,0 chrXV 615199 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.54;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3381,369,0 chrXV 615511 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.62;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2860,324,0 chrXV 615643 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=4.239;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.280;QD=22.81;ReadPosRankSum=1.707;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3204,366,0 chrXV 616666 . T A 2418 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.03;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2451,279,0 chrXV 616760 . G C 2683 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.96;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2716,303,0 chrXV 616818 . A T 2358 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.87;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2391,267,0 chrXV 616830 . T C 1949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-1.386;QD=19.49;ReadPosRankSum=1.697;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1982,222,0 chrXV 616831 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.24;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1976,222,0 chrXV 616846 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=19.48;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2254,243,0 chrXV 617114 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.92;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2569,291,0 chrXV 617162 . T C 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.392;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.016;QD=22.89;ReadPosRankSum=1.700;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2482,291,0 chrXV 617230 . T C 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.482;QD=23.17;ReadPosRankSum=1.690;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1956,222,0 chrXV 617280 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.90;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2186,237,0 chrXV 617892 . A G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=116;Dels=0.00;FS=8.092;HaplotypeScore=11.1204;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.795;QD=23.22;ReadPosRankSum=2.407;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2726,309,0 chrXV 618586 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=146;Dels=0.00;FS=3.040;HaplotypeScore=12.0299;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.331;QD=22.87;ReadPosRankSum=2.399;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3339,384,0 chrXV 618618 . G T 3069 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9405;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.06;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3102,351,0 chrXV 618629 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.345;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.262;QD=19.40;ReadPosRankSum=1.668;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3176,363,0 chrXV 618723 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=22.13;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3298,372,0 chrXV 618863 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4787;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=21.10;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3418,375,0 chrXV 618889 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=20.21;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3295,360,0 chrXV 618906 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.7585;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;MQRankSum=-1.504;QD=16.88;ReadPosRankSum=1.711;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2852,324,0 chrXV 618937 . T C 1731 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=139.9287;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=10.96;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:1764,201,0 chrXV 618941 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=10.70;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:1799,198,0 chrXV 618972 . A T 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.845;DP=188;Dels=0.00;FS=5.575;HaplotypeScore=167.3607;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;MQRankSum=-1.311;QD=0.21;ReadPosRankSum=-4.466;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:180,8:188:9:71,9,0 chrXV 619031 . C G 4361.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.3527;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.64;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:4361,516,0 chrXV 619398 . A G 4801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.7802;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.548;QD=19.52;ReadPosRankSum=1.690;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:4801,561,0 chrXV 619601 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.40;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2810,318,0 chrXV 619636 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.90;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2710,291,0 chrXV 619647 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=9.336;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.010;QD=21.18;ReadPosRankSum=2.391;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2680,306,0 chrXV 619861 . A G 2665 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.39;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2698,315,0 chrXV 620063 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.4329;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.28;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3130,342,0 chrXV 620354 . C A 2894 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.5282;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.53;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2927,318,0 chrXV 620433 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.53;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2714,297,0 chrXV 620535 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.58;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3455,381,0 chrXV 620580 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=4.486;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.773;QD=22.28;ReadPosRankSum=1.713;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3989,459,0 chrXV 620613 . G A 4247.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.12;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4247,486,0 chrXV 620640 . A T 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=4.619;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.433;QD=20.51;ReadPosRankSum=1.711;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3446,378,0 chrXV 620652 . C A 3199 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.7543;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.49;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3232,372,0 chrXV 620962 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.70;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3137,351,0 chrXV 621636 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.5930;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.22;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3237,363,0 chrXV 621667 . T A 3042 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=21.57;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3075,333,0 chrXV 621669 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=143;Dels=0.00;FS=5.511;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.293;QD=20.22;ReadPosRankSum=2.865;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:2924,333,0 chrXV 621685 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.48;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2857,324,0 chrXV 621813 . C A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.4527;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.31;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3683,411,0 chrXV 621951 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=150;Dels=0.00;FS=5.920;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.228;QD=20.45;ReadPosRankSum=2.712;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3101,351,0 chrXV 621972 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=180;Dels=0.00;FS=6.977;HaplotypeScore=8.6665;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.021;QD=19.10;ReadPosRankSum=2.367;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:3438,396,0 chrXV 622023 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=191;Dels=0.00;FS=2.983;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.984;QD=19.92;ReadPosRankSum=2.423;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,184:191:99:3805,441,0 chrXV 622053 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=3.362;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.327;QD=22.49;ReadPosRankSum=1.694;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4049,465,0 chrXV 622119 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=161;Dels=0.00;FS=6.915;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.209;QD=20.52;ReadPosRankSum=2.419;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3303,375,0 chrXV 622122 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.133;QD=19.23;ReadPosRankSum=1.668;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3186,360,0 chrXV 622291 . A G 3669.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.37;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3669,414,0 chrXV 623349 . G C 2528 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.89;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2561,291,0 chrXV 623604 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.72;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2248,246,0 chrXV 624112 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4340,510,0 chrXV 624868 . C A 3178 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.42;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3211,348,0 chrXV 624979 . G T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.53;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4528,501,0 chrXV 625559 . A C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.165;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.608;QD=21.84;ReadPosRankSum=1.702;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2545,288,0 chrXV 625581 . A G 2189 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.27;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2222,252,0 chrXV 625595 . A G 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=3.052;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-1.257;QD=16.44;ReadPosRankSum=2.398;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1595,183,0 chrXV 625596 . C T 1541 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=16.05;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1574,174,0 chrXV 625649 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.50;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2592,288,0 chrXV 625813 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.461;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.439;QD=24.57;ReadPosRankSum=1.708;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3489,396,0 chrXV 625878 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.01;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3652,399,0 chrXV 626602 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2134,237,0 chrXV 626782 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2062,228,0 chrXV 626967 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=8.612;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.913;QD=21.63;ReadPosRankSum=2.398;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3105,369,0 chrXV 627024 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.28;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3399,375,0 chrXV 627279 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.4098;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.92;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3943,453,0 chrXV 627315 . C T 4491.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.76;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4491,507,0 chrXV 627354 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.67;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4810,537,0 chrXV 627543 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.94;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4388,498,0 chrXV 627675 . A C 2472 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.94;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2505,288,0 chrXV 627997 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.80;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2801,303,0 chrXV 628281 . T C 3082 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.83;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3115,354,0 chrXV 628366 . T G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=128;Dels=0.00;FS=2.757;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.675;QD=20.64;ReadPosRankSum=2.333;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2675,315,0 chrXV 628552 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.71;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3203,357,0 chrXV 628572 . C A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.56;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3262,360,0 chrXV 628689 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.38;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3527,384,0 chrXV 628846 . A G 3954.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.81;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3954,453,0 chrXV 628888 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=194;Dels=0.00;FS=5.453;HaplotypeScore=8.1722;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.073;QD=19.95;ReadPosRankSum=2.922;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:3871,444,0 chrXV 628909 . A G 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=186;Dels=0.00;FS=7.694;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.786;QD=20.44;ReadPosRankSum=2.344;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3801,426,0 chrXV 629011 . C T 4842.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.0185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4842,540,0 chrXV 629132 . G A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.68;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4546,498,0 chrXV 629650 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2278,261,0 chrXV 629716 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2888,327,0 chrXV 629973 . A G 2833 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2866,324,0 chrXV 630473 . T C 789 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.93;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:93:822,93,0 chrXV 630587 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2079,240,0 chrXV 632023 . G C 2441 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2474,279,0 chrXV 632823 . T C 2929 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2962,336,0 chrXV 633069 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1989,216,0 chrXV 633360 . T C 4697.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4697,537,0 chrXV 633825 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.56;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2906,315,0 chrXV 634186 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.18;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2003,219,0 chrXV 634307 . T C 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.876;QD=21.21;ReadPosRankSum=1.691;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1857,210,0 chrXV 634570 . G T 4278.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.64;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4278,480,0 chrXV 634711 . T C 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.186;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.714;QD=22.01;ReadPosRankSum=1.654;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3918,447,0 chrXV 634951 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.295;QD=20.62;ReadPosRankSum=1.696;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2013,228,0 chrXV 635023 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.33;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2087,237,0 chrXV 636422 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.81;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4122,459,0 chrXV 636791 . A G 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.367;QD=21.84;ReadPosRankSum=2.936;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2435,273,0 chrXV 637574 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.7287;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.409;QD=21.22;ReadPosRankSum=3.359;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3332,363,0 chrXV 637797 . T C 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.832;QD=20.70;ReadPosRankSum=1.713;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3684,420,0 chrXV 638136 . T C 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.691;QD=22.33;ReadPosRankSum=1.667;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4778,546,0 chrXV 638364 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.1151;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.85;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3970,441,0 chrXV 639033 . T G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.97;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3272,369,0 chrXV 639042 . C G 3036 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.24;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3069,357,0 chrXV 639159 . G A 5647.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=21.80;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5647,645,0 chrXV 639225 . A C 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=3.015;HaplotypeScore=3.2482;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.171;QD=18.99;ReadPosRankSum=2.422;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3419,393,0 chrXV 639226 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=178;Dels=0.00;FS=6.053;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.938;QD=19.20;ReadPosRankSum=2.791;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3418,390,0 chrXV 639299 . T C 2565 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=14.02;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:2598,294,0 chrXV 639307 . T C 2827 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=5.051;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;MQRankSum=1.714;QD=14.72;ReadPosRankSum=1.696;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:2860,318,0 chrXV 639313 . G T 2916 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=14.73;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:2949,321,0 chrXV 639316 . T A 2999 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;QD=15.07;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3032,330,0 chrXV 639334 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;QD=15.46;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:2908,324,0 chrXV 639365 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=16.74;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2560,291,0 chrXV 639455 . G T 2743 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=10.3394;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.94;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2776,315,0 chrXV 639556 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=122;Dels=0.00;FS=5.110;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=1.501;QD=21.37;ReadPosRankSum=1.674;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2640,306,0 chrXV 639581 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=18.3032;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.61;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2691,300,0 chrXV 639717 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.28;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3409,402,0 chrXV 639758 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.53;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3788,411,0 chrXV 639819 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.10;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3692,414,0 chrXV 639978 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=180;Dels=0.00;FS=6.496;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.638;QD=22.54;ReadPosRankSum=2.408;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4058,459,0 chrXV 640127 . C T 4856.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.1896;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4856,555,0 chrXV 640163 . T G 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=184;Dels=0.00;FS=3.463;HaplotypeScore=18.8555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.133;QD=22.18;ReadPosRankSum=1.656;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4082,459,0 chrXV 640217 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=7.785;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.862;QD=22.21;ReadPosRankSum=2.389;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3598,414,0 chrXV 640481 . A G 2306 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2339,264,0 chrXV 640558 . G T 2522 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2555,288,0 chrXV 640649 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.56;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2837,309,0 chrXV 640991 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.11;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2667,294,0 chrXV 641108 . C A 2238 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.73;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2271,255,0 chrXV 641196 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.90;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2590,282,0 chrXV 641229 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.86;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2204,243,0 chrXV 641351 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=22.57;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3272,375,0 chrXV 641422 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.379;QD=23.93;ReadPosRankSum=1.712;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4044,459,0 chrXV 641453 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.822;QD=21.18;ReadPosRankSum=2.359;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,161:166:99:3516,402,0 chrXV 641468 . A G 3077 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=19.23;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3110,354,0 chrXV 641509 . T C 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=2.858;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;MQRankSum=0.648;QD=13.82;ReadPosRankSum=2.399;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2064,237,0 chrXV 641527 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=12.57;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:1918,207,0 chrXV 641537 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=12.35;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:1725,198,0 chrXV 641538 . T A 1857 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=13.36;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1890,207,0 chrXV 641550 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=12.07;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1856,204,0 chrXV 641551 . T C 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=154;Dels=0.00;FS=6.104;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;MQRankSum=-2.432;QD=11.03;ReadPosRankSum=2.955;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:1732,201,0 chrXV 641585 . C G 2652 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=14.82;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2685,303,0 chrXV 641637 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=2.573;HaplotypeScore=12.1112;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.162;QD=19.78;ReadPosRankSum=2.351;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3461,393,0 chrXV 641755 . T A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=22.32;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3526,390,0 chrXV 641916 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=19.10;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2631,288,0 chrXV 641917 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-1.454;QD=17.63;ReadPosRankSum=1.707;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2484,288,0 chrXV 642038 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.41;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3340,384,0 chrXV 642125 . G T 2687 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=22.39;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2720,300,0 chrXV 642126 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=3.039;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;MQRankSum=0.051;QD=20.82;ReadPosRankSum=2.409;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2573,294,0 chrXV 642138 . T C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=133;Dels=0.00;FS=6.527;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-0.434;QD=20.45;ReadPosRankSum=2.320;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2753,315,0 chrXV 642164 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.594;QD=17.74;ReadPosRankSum=1.704;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2286,261,0 chrXV 642189 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=17.34;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2235,243,0 chrXV 642294 . G T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.30;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3658,411,0 chrXV 642380 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.9116;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.774;QD=23.47;ReadPosRankSum=-0.774;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3333,378,0 chrXV 642471 . A G 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=183;Dels=0.00;FS=3.944;HaplotypeScore=14.1502;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.234;QD=24.23;ReadPosRankSum=1.713;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:4434,507,0 chrXV 642646 . G A 5550.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.42;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:5550,606,0 chrXV 642679 . T C 5490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.9970;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.133;QD=22.14;ReadPosRankSum=1.718;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5490,636,0 chrXV 643115 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.17;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2976,333,0 chrXV 643206 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2656,288,0 chrXV 643346 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7357;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.99;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2355,267,0 chrXV 643604 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.16;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2005,219,0 chrXV 643871 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.96;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3369,369,0 chrXV 643999 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.1992;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.16;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3501,396,0 chrXV 644421 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.928;QD=19.99;ReadPosRankSum=1.656;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3618,417,0 chrXV 644459 . C G 3221.02 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.40;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3254,366,0 chrXV 644486 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=16.87;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:2715,321,0 chrXV 644495 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.413;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-1.228;QD=17.58;ReadPosRankSum=1.710;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2828,321,0 chrXV 644548 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.36;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4104,462,0 chrXV 644578 . C T 5395.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.96;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5395,588,0 chrXV 644790 . T C 5406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=238;Dels=0.00;FS=8.024;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.503;QD=22.71;ReadPosRankSum=2.429;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,234:238:99:5406,612,0 chrXV 644937 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=158;Dels=0.00;FS=2.791;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.957;QD=21.97;ReadPosRankSum=2.418;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3472,399,0 chrXV 644964 . T A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.04;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3687,417,0 chrXV 645045 . C T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.65;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3353,375,0 chrXV 645075 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.40;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3557,390,0 chrXV 645369 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.450;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.347;QD=22.19;ReadPosRankSum=1.706;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3029,357,0 chrXV 645801 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.12;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3015,336,0 chrXV 645807 . T C 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=126;Dels=0.00;FS=9.473;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.545;QD=21.98;ReadPosRankSum=2.410;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2803,321,0 chrXV 645971 . A G 2414 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2447,276,0 chrXV 646140 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.02;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2891,318,0 chrXV 646281 . T A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.3861;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.82;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3573,405,0 chrXV 646392 . A C 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=191;Dels=0.00;FS=3.657;HaplotypeScore=14.6754;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.161;QD=22.27;ReadPosRankSum=1.695;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4253,489,0 chrXV 646794 . T C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=10.719;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.057;QD=18.47;ReadPosRankSum=1.673;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2212,261,0 chrXV 646866 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1772,201,0 chrXV 646904 . A T 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.126;QD=22.66;ReadPosRankSum=2.362;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1302,144,0 chrXV 647133 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1890,219,0 chrXV 647201 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1939,219,0 chrXV 647253 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.73;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2238,243,0 chrXV 647456 . T C 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0701;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.215;QD=22.60;ReadPosRankSum=1.682;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3152,357,0 chrXV 647541 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2178;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.56;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3393,378,0 chrXV 647668 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.15;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3158,345,0 chrXV 647729 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.20;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3800,420,0 chrXV 647803 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.50;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3735,426,0 chrXV 647930 . A T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.88;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3500,390,0 chrXV 648168 . T G 4787.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.00;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4787,537,0 chrXV 648172 . T G 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.274;QD=20.42;ReadPosRankSum=1.716;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4512,513,0 chrXV 648204 . C T 4281.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.10;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4281,468,0 chrXV 648237 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.3734;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.78;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3823,411,0 chrXV 648434 . C T 4602.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0311;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.90;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4602,516,0 chrXV 648663 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.472;DP=106;Dels=0.00;FS=7.738;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.939;QD=20.64;ReadPosRankSum=3.740;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:5,101:106:99:2221,258,0 chrXV 649028 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.05;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3342,369,0 chrXV 649249 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.03;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1438,159,0 chrXV 649497 . A G 3092 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.78;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3125,366,0 chrXV 649518 . A G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=4.301;HaplotypeScore=8.2023;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.732;QD=22.65;ReadPosRankSum=1.658;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3227,369,0 chrXV 649676 . A G 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.561;QD=22.99;ReadPosRankSum=1.656;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4185,483,0 chrXV 649752 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.14;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3267,366,0 chrXV 649839 . T C 2875 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2908,333,0 chrXV 650136 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2639,309,0 chrXV 650442 . A G 3133 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.87;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3166,363,0 chrXV 650943 . C T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3757,426,0 chrXV 651516 . C T 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.635;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.837;QD=23.47;ReadPosRankSum=-0.722;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2850,303,0 chrXV 651690 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1772,201,0 chrXV 651798 . G A 41.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:74,9,0 chrXV 651841 . A G 355 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:45:388,45,0 chrXV 652283 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.58;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3278,372,0 chrXV 652485 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.48;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2697,297,0 chrXV 652513 . A G 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.527;QD=21.53;ReadPosRankSum=1.703;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2574,297,0 chrXV 652865 . C A 4307.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.41;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4307,474,0 chrXV 652895 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4194;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.83;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4083,468,0 chrXV 652952 . A T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2703;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.30;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3349,375,0 chrXV 652958 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=4.046;HaplotypeScore=7.5594;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.472;QD=19.85;ReadPosRankSum=1.669;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3315,378,0 chrXV 652990 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.16;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3346,369,0 chrXV 653075 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.5809;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.520;QD=21.13;ReadPosRankSum=1.709;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3182,360,0 chrXV 653138 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.87;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3414,390,0 chrXV 653186 . A T 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-2.224;QD=24.02;ReadPosRankSum=2.412;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3180,357,0 chrXV 653431 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.77;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3153,345,0 chrXV 653618 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.45;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3198,348,0 chrXV 653625 . A G 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.045;DP=138;Dels=0.00;FS=7.149;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.931;QD=21.03;ReadPosRankSum=0.768;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2935,311,0 chrXV 653702 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.59;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3228,354,0 chrXV 653732 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.94;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4060,462,0 chrXV 653878 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.56;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3970,435,0 chrXV 653896 . G A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.95;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4609,507,0 chrXV 653929 . G A 5391.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.14;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5391,609,0 chrXV 654602 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=4.911;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.162;QD=22.10;ReadPosRankSum=1.666;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3492,408,0 chrXV 654698 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.56;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3471,393,0 chrXV 654734 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.1327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3020,333,0 chrXV 654809 . T A 3186 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.55;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3219,366,0 chrXV 655223 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.12;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2931,333,0 chrXV 655286 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.0670;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.652;QD=22.33;ReadPosRankSum=1.700;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2467,276,0 chrXV 655466 . G T 2000 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.05;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2033,225,0 chrXV 655583 . T C 2338 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.15;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2371,267,0 chrXV 655671 . T C 2278 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.16;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2311,270,0 chrXV 655685 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.87;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2477,288,0 chrXV 655925 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.644;QD=23.56;ReadPosRankSum=1.379;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3699,402,0 chrXV 656069 . T C 3025 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7332;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.57;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3058,354,0 chrXV 656165 . T G 2948 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.91;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2981,351,0 chrXV 656264 . G C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.1796;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.54;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3562,408,0 chrXV 656389 . C T 2561 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.55;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2594,309,0 chrXV 656534 . T C 3131 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.16;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3164,354,0 chrXV 656567 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.94;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2643,291,0 chrXV 656602 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.31;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2019,228,0 chrXV 656863 . G T 2801 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.77;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2834,312,0 chrXV 656880 . T C 2515 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.50;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2548,294,0 chrXV 656887 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.32;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2544,288,0 chrXV 657104 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=144;Dels=0.00;FS=5.525;HaplotypeScore=13.3064;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.458;QD=18.69;ReadPosRankSum=2.937;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2725,315,0 chrXV 657201 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.96;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2828,306,0 chrXV 657204 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=19.31;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2852,318,0 chrXV 657269 . T A 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=167;Dels=0.00;FS=2.702;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.772;QD=19.58;ReadPosRankSum=2.347;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3270,360,0 chrXV 657824 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=168;Dels=0.00;FS=3.024;HaplotypeScore=15.0753;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.243;QD=21.44;ReadPosRankSum=2.420;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3602,408,0 chrXV 657959 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.87;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3653,411,0 chrXV 658010 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3748,411,0 chrXV 658322 . T C 3117 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.61;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3150,357,0 chrXV 658402 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3271,369,0 chrXV 658487 . G T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.01;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4358,474,0 chrXV 658496 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.35;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4142,474,0 chrXV 658645 . A G 5773.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5773,657,0 chrXV 658744 . G A 5187.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.2328;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.65;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5187,591,0 chrXV 658992 . A G 4745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=210;Dels=0.00;FS=2.789;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.690;QD=22.60;ReadPosRankSum=2.403;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4745,534,0 chrXV 659154 . C T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.68;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4073,456,0 chrXV 660208 . A G 2893 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2926,333,0 chrXV 660722 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.68;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3309,363,0 chrXV 660741 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=155;Dels=0.00;FS=9.906;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.526;QD=20.48;ReadPosRankSum=2.942;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3207,366,0 chrXV 660805 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.90;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4076,450,0 chrXV 661531 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=186;Dels=0.00;FS=6.527;HaplotypeScore=7.9121;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.869;QD=21.33;ReadPosRankSum=2.423;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3967,450,0 chrXV 661546 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.02;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3805,423,0 chrXV 661971 . A T 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.650;QD=18.45;ReadPosRankSum=1.624;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1214,132,0 chrXV 662174 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.253;QD=23.71;ReadPosRankSum=2.179;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2617,297,0 chrXV 662208 . C A 2368 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.99;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2401,282,0 chrXV 662245 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=24.80;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2538,276,0 chrXV 662272 . C A 3056 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.24;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3089,348,0 chrXV 662292 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.2076;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.40;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3305,357,0 chrXV 662319 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.06;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3732,417,0 chrXV 662365 . G C 3741.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.40;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3741,432,0 chrXV 662487 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.36;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3096,351,0 chrXV 662592 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.31;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3356,381,0 chrXV 662688 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.93;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2467,270,0 chrXV 662842 . C A 3159 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.89;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3192,348,0 chrXV 663595 . A C 2023 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.29;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2056,231,0 chrXV 663696 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=22.95;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1456,165,0 chrXV 663812 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.7782;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=0.80;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,48:55:9:76,9,0 chrXV 663913 . A G 920 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.246;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=4.7027;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;MQRankSum=-1.307;QD=15.86;ReadPosRankSum=-0.638;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:953,108,0 chrXV 663915 . G A 949 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.832;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9140;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;MQRankSum=-0.500;QD=18.25;ReadPosRankSum=0.785;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:982,108,0 chrXV 663919 . C G 980 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=18.49;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1013,117,0 chrXV 664181 . G T 1773 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=24.97;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1806,201,0 chrXV 664211 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=21.36;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1849,207,0 chrXV 664292 . A G 2159 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=21.38;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2192,249,0 chrXV 664318 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=20.33;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1883,204,0 chrXV 664333 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=16.33;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1503,171,0 chrXV 664342 . T C 1492 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=15.38;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1525,168,0 chrXV 664345 . G A 1536 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=14.77;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1569,174,0 chrXV 664352 . A C 1635 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=12.98;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1668,198,0 chrXV 664387 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=17.11;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2343,267,0 chrXV 664421 . C G 2280 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.10;MQ0=0;QD=15.20;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2313,267,0 chrXV 664440 . A G 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.783;DP=139;Dels=0.00;FS=27.861;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;MQRankSum=-2.584;QD=14.63;ReadPosRankSum=3.693;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:5,134:139:99:2066,240,0 chrXV 664462 . T C 1339 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=10.54;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1372,159,0 chrXV 664466 . A G 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=5.812;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;MQRankSum=-1.732;QD=10.25;ReadPosRankSum=1.704;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1283,147,0 chrXV 664473 . T C 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;MQRankSum=-1.472;QD=8.85;ReadPosRankSum=1.703;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1095,123,0 chrXV 664484 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=10.37;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1340,153,0 chrXV 664533 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=17.26;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2622,288,0 chrXV 664542 . A G 2897 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=19.44;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2930,336,0 chrXV 664629 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=22.18;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3005,342,0 chrXV 664631 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;QD=23.89;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3186,345,0 chrXV 664734 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=23.31;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3086,336,0 chrXV 664814 . T A 72.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;DP=18;Dels=0.00;FS=2.616;HaplotypeScore=2.5450;MLEAC=1;MLEAF=0.500;MQ=29.52;MQ0=6;MQRankSum=2.637;QD=4.00;ReadPosRankSum=-1.932;SB=-2.892e+00 GT:AD:DP:GQ:PL 0/1:10,8:18:23:102,0,23 chrXV 664815 . G A 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=14;Dels=0.00;FS=3.680;HaplotypeScore=2.5450;MLEAC=1;MLEAF=0.500;MQ=20.27;MQ0=6;MQRankSum=2.017;QD=2.07;ReadPosRankSum=-1.638;SB=0.406 GT:AD:DP:GQ:PL 0/1:10,4:14:48:59,0,48 chrXV 665095 . C T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5528;MLEAC=1;MLEAF=0.500;MQ=9.83;MQ0=37;MQRankSum=1.231;QD=0.34;ReadPosRankSum=0.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,4:42:39:44,0,39 chrXV 665162 . C A 387 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=5.53;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:48:420,48,0 chrXV 665238 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=79;Dels=0.00;FS=5.365;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-1.280;QD=22.68;ReadPosRankSum=3.160;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:4,74:79:99:1825,207,0 chrXV 665265 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=22.55;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2040,228,0 chrXV 665409 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=86;Dels=0.00;FS=6.111;HaplotypeScore=72.2723;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=2.518;QD=20.50;ReadPosRankSum=2.918;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1796,210,0 chrXV 665469 . T A 1899 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.58;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1932,216,0 chrXV 666379 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8211;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.81;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3275,369,0 chrXV 666607 . G A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3847,423,0 chrXV 666884 . T C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.30;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3680,420,0 chrXV 667108 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2770,315,0 chrXV 667235 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.18;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3477,393,0 chrXV 667477 . A T 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.129;QD=21.93;ReadPosRankSum=1.681;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1502,174,0 chrXV 667488 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.73;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1599,180,0 chrXV 667624 . C T 133.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=9.51;SB=-2.913e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:166,18,0 chrXV 667630 . C A 153.06 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=10.93;SB=-2.807e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:21:186,21,0 chrXV 667729 . G C 283 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=42.5264;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=14.89;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:316,36,0 chrXV 668097 . A T 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=4.055;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.398;QD=23.48;ReadPosRankSum=1.684;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3404,381,0 chrXV 668343 . C T 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.8535;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=2.376;QD=20.00;ReadPosRankSum=-0.138;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2713,265,0 chrXV 668376 . A C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=130;Dels=0.00;FS=2.838;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.797;QD=20.04;ReadPosRankSum=2.411;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2638,300,0 chrXV 668451 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.537;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.2877;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.707;QD=21.58;ReadPosRankSum=1.708;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3098,336,0 chrXV 668667 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.94;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2753,315,0 chrXV 668767 . G C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3332,381,0 chrXV 668833 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.47;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2738,303,0 chrXV 668880 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.21;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2762,309,0 chrXV 668916 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9589;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=22.41;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3922,444,0 chrXV 669051 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.3755;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.33;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2599,288,0 chrXV 669219 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=3.718;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.303;QD=20.91;ReadPosRankSum=1.701;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2396,285,0 chrXV 669720 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.6868;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=20.78;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2817,309,0 chrXV 670050 . G T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.83;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3333,375,0 chrXV 670051 . C A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.94;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3263,369,0 chrXV 670150 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.98;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2649,300,0 chrXV 670200 . C T 3136 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.3601;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.58;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3169,351,0 chrXV 670328 . A G 2555 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.03;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2588,306,0 chrXV 670513 . C A 3163 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.52;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3196,360,0 chrXV 670593 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=90;Dels=0.00;FS=6.676;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.260;QD=21.80;ReadPosRankSum=2.203;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1995,231,0 chrXV 670869 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.73;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2988,333,0 chrXV 670892 . T A 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.092;QD=18.23;ReadPosRankSum=2.388;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2221,255,0 chrXV 670894 . A T 2283 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=19.18;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2316,258,0 chrXV 670961 . T A 1950 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.57;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1983,225,0 chrXV 671012 . G C 3078 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6018;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.86;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3111,357,0 chrXV 671153 . T C 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.5717;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.588;QD=21.62;ReadPosRankSum=1.716;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4669,540,0 chrXV 671534 . A G 5661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=241;Dels=0.00;FS=8.417;HaplotypeScore=16.6956;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.601;QD=23.49;ReadPosRankSum=2.429;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,237:241:99:5661,645,0 chrXV 671818 . A G 5072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=248;Dels=0.00;FS=2.949;HaplotypeScore=14.3896;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.247;QD=20.45;ReadPosRankSum=2.409;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:2,243:248:99:5072,573,0 chrXV 672177 . T G 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=3.004;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=1.143;QD=20.28;ReadPosRankSum=2.372;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3237,366,0 chrXV 672196 . C A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.33;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3314,369,0 chrXV 672232 . T G 3851.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.45;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3851,441,0 chrXV 672316 . A G 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=158;Dels=0.00;FS=2.585;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=2.258;QD=18.83;ReadPosRankSum=2.955;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3008,345,0 chrXV 672370 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=144;Dels=0.00;FS=7.159;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=1.057;QD=20.77;ReadPosRankSum=2.364;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3024,336,0 chrXV 672392 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.3759;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.17;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3247,363,0 chrXV 672638 . A G 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.624;QD=22.18;ReadPosRankSum=1.624;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2162,255,0 chrXV 672653 . A T 1954 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.46;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1987,222,0 chrXV 672933 . C A 2227 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.69;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2260,246,0 chrXV 673013 . T C 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=3.443;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.018;QD=22.22;ReadPosRankSum=1.696;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2166,243,0 chrXV 673284 . T G 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=112;Dels=0.00;FS=5.278;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=2.028;QD=14.04;ReadPosRankSum=2.843;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:3,106:112:99:1605,183,0 chrXV 673291 . A T 1747 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=88.5381;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=15.74;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1780,198,0 chrXV 673312 . T C 1693 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=13.54;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1726,204,0 chrXV 673387 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.53;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3380,366,0 chrXV 673509 . T C 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=6.273;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;MQRankSum=-0.730;QD=20.56;ReadPosRankSum=2.290;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2583,288,0 chrXV 673540 . T A 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-0.403;QD=19.88;ReadPosRankSum=2.332;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2518,273,0 chrXV 673605 . A G 2214 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=18.92;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2247,255,0 chrXV 673607 . T G 2156 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=18.91;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2189,249,0 chrXV 673661 . T C 1108 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=13.19;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1141,129,0 chrXV 673663 . G A 1125 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=12.93;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1158,129,0 chrXV 673664 . T A 1140 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=13.10;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1173,129,0 chrXV 673674 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=0;QD=12.51;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1271,144,0 chrXV 673702 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=15.57;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1715,195,0 chrXV 673942 . T A 1494 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.5137;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=17.37;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1527,168,0 chrXV 674206 . C A 815 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=19.88;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:848,93,0 chrXV 674210 . T C 788 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;MQRankSum=-1.225;QD=19.22;ReadPosRankSum=1.648;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:93:821,93,0 chrXV 674212 . T G 794 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=19.37;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:827,93,0 chrXV 674227 . A G 850 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=17.71;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:883,102,0 chrXV 674265 . T C 769 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=17.48;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:802,93,0 chrXV 674300 . G A 968 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=16.98;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1001,114,0 chrXV 674309 . G C 999 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.11;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1032,120,0 chrXV 674364 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.19;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2046,222,0 chrXV 674412 . G A 2347 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.01;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2380,267,0 chrXV 674526 . C G 2684 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.14;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2717,306,0 chrXV 675019 . A C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=178;Dels=0.00;FS=5.189;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.449;QD=21.16;ReadPosRankSum=2.275;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:4,173:178:99:3766,413,0 chrXV 675258 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.88;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1599,177,0 chrXV 675333 . T C 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.423;DP=83;Dels=0.00;FS=14.556;HaplotypeScore=8.0848;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=-0.152;QD=1.37;ReadPosRankSum=-4.226;SB=-1.767e+00 GT:AD:DP:GQ:PL 0/1:69,14:83:0:142,0,0 chrXV 675337 . T C 82.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.902;DP=83;Dels=0.00;FS=2.770;HaplotypeScore=7.3449;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=1.661;QD=0.99;ReadPosRankSum=5.025;SB=-7.720e+02 GT:AD:DP:GQ:PL 0/1:11,70:83:68:112,0,68 chrXV 675453 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.87;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1794,192,0 chrXV 675643 . A T 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.409;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.640;QD=23.72;ReadPosRankSum=1.686;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1812,198,0 chrXV 675701 . T C 1443 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.04;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1476,165,0 chrXV 675793 . C T 1399 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1432,165,0 chrXV 675894 . C G 2045 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.06;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2078,228,0 chrXV 676094 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.346;QD=22.82;ReadPosRankSum=1.606;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2543,291,0 chrXV 676127 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.12;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2266,258,0 chrXV 676289 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5374;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.32;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2598,294,0 chrXV 676532 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.7753;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.91;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4673,519,0 chrXV 676592 . C T 4623.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.6313;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.66;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4623,513,0 chrXV 676727 . G A 5472.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=20.4098;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.34;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5472,621,0 chrXV 676789 . C G 6627.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=18.4544;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.46;SB=-3.202e+03 GT:AD:DP:GQ:PL 1/1:0,291:295:99:6627,762,0 chrXV 677365 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=18.2528;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.37;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:5218,579,0 chrXV 677733 . C G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.9699;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.49;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3278,375,0 chrXV 677846 . T A 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=8.753;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.210;QD=22.39;ReadPosRankSum=2.418;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3538,393,0 chrXV 677951 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.54;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1476,162,0 chrXV 677977 . G C 1593 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.16;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1626,186,0 chrXV 678010 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.99;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1826,198,0 chrXV 678073 . C A 1973 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.45;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2006,222,0 chrXV 678100 . C G 1904 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.39;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1937,222,0 chrXV 678248 . A G 1672 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.89;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1705,195,0 chrXV 678535 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1660,186,0 chrXV 678625 . A T 2639 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.37;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2672,291,0 chrXV 678665 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.30;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2993,327,0 chrXV 678842 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.92;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3755,411,0 chrXV 678991 . A G 3090 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.6766;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.88;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3123,357,0 chrXV 679215 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=3.087;HaplotypeScore=7.0785;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.033;QD=22.20;ReadPosRankSum=1.611;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2586,294,0 chrXV 679794 . G A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8729;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.31;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4084,456,0 chrXV 679983 . C T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.2234;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.48;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4069,450,0 chrXV 680588 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=4.308;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.631;QD=23.77;ReadPosRankSum=1.709;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3613,408,0 chrXV 680922 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1154,129,0 chrXV 681204 . T A 689 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:78:722,78,0 chrXV 681705 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.6646;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.77;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4075,471,0 chrXV 681810 . G T 2384 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2417,273,0 chrXV 682177 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3073;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.81;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3238,369,0 chrXV 682254 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=22.91;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3391,372,0 chrXV 682563 . C A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.22;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4067,462,0 chrXV 682629 . C A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=23.81;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4143,471,0 chrXV 682723 . T G 5137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=239;Dels=0.00;FS=2.652;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.652;QD=21.49;ReadPosRankSum=2.377;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,236:239:99:5137,588,0 chrXV 682752 . T A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.6450;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.72;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5089,552,0 chrXV 682813 . G C 3481.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.34;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3481,396,0 chrXV 682818 . C A 3169 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.61;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3202,363,0 chrXV 682837 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.02;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3424,384,0 chrXV 682961 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.9653;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.60;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4191,480,0 chrXV 682981 . G T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=22.81;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3901,423,0 chrXV 683158 . G A 4822.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.12;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4822,531,0 chrXV 683206 . C T 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=229;Dels=0.00;FS=3.245;HaplotypeScore=15.8507;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.003;QD=22.96;ReadPosRankSum=0.881;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5257,560,0 chrXV 683240 . C T 5766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.761;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=17.9024;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.304;QD=23.34;ReadPosRankSum=-0.284;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5766,604,0 chrXV 683302 . G A 5239.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.1131;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5239,582,0 chrXV 683351 . T C 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=220;Dels=0.00;FS=6.161;HaplotypeScore=13.4869;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.813;QD=21.37;ReadPosRankSum=2.349;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:4701,537,0 chrXV 683410 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.34;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4098,450,0 chrXV 683562 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3736;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.92;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3150,351,0 chrXV 683642 . G T 2089 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.28;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2122,234,0 chrXV 683694 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=19.27;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1806,204,0 chrXV 683698 . A C 1601 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=17.22;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1634,189,0 chrXV 683731 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.46;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1551,171,0 chrXV 683759 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=14.88;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1179,135,0 chrXV 683778 . T C 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-1.455;QD=15.54;ReadPosRankSum=1.686;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1214,138,0 chrXV 683842 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=19.60;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1954,219,0 chrXV 683845 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=19.41;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1993,219,0 chrXV 684077 . T C 2550 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.9445;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.73;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2583,291,0 chrXV 684078 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.24;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2645,297,0 chrXV 684132 . A G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;DP=125;Dels=0.00;FS=8.300;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.268;QD=16.97;ReadPosRankSum=2.370;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2154,246,0 chrXV 684419 . C A 5294.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5294,585,0 chrXV 684893 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.123;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.044;QD=21.65;ReadPosRankSum=1.177;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3377,396,0 chrXV 685067 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.9707;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.90;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3549,393,0 chrXV 685601 . T A 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=3.174;HaplotypeScore=4.2766;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.039;QD=23.45;ReadPosRankSum=1.681;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3245,369,0 chrXV 685875 . A C 3630.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.42;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3630,417,0 chrXV 686417 . T C 2252 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2285,267,0 chrXV 686985 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.35;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2083,228,0 chrXV 687587 . T C 3147 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3180,369,0 chrXV 687753 . C G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5687;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.89;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3410,387,0 chrXV 688017 . G T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.9772;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.50;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3668,408,0 chrXV 688433 . T A 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=188;Dels=0.00;FS=2.974;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.607;QD=21.77;ReadPosRankSum=2.345;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4093,447,0 chrXV 688554 . T A 4945.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4945,537,0 chrXV 688682 . G A 5074.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.97;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5074,564,0 chrXV 688719 . T C 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=264;Dels=0.00;FS=3.004;HaplotypeScore=16.1576;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.691;QD=19.13;ReadPosRankSum=2.393;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:2,259:264:99:5049,573,0 chrXV 688982 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=235;Dels=0.00;FS=5.124;HaplotypeScore=14.7407;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.562;QD=16.59;ReadPosRankSum=1.702;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,231:235:99:3899,453,0 chrXV 689641 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3725,435,0 chrXV 690202 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2070,225,0 chrXV 690298 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.21;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1589,174,0 chrXV 690299 . A G 1529 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.42;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1562,177,0 chrXV 690558 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.28;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2395,261,0 chrXV 690678 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.676;QD=19.67;ReadPosRankSum=1.690;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1646,186,0 chrXV 690980 . G C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.12;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3306,378,0 chrXV 691843 . C T 4892.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.6981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.22;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4892,552,0 chrXV 691977 . T A 2572 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.61;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2605,285,0 chrXV 692038 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=7.648;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=21.76;ReadPosRankSum=1.678;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2818,330,0 chrXV 692169 . A C 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.663;DP=65;Dels=0.00;FS=7.124;HaplotypeScore=13.3183;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.791;QD=21.34;ReadPosRankSum=1.275;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:3,60:65:99:1420,165,0 chrXV 692395 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=139;Dels=0.00;FS=3.004;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.310;QD=22.70;ReadPosRankSum=2.414;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3188,363,0 chrXV 692619 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6712;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.23;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4066,450,0 chrXV 692736 . T G 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=3.334;HaplotypeScore=8.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.526;QD=22.39;ReadPosRankSum=1.713;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4053,477,0 chrXV 692888 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=172;Dels=0.00;FS=6.043;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.185;QD=21.60;ReadPosRankSum=2.935;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:3,166:172:99:3715,426,0 chrXV 693526 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.96;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3360,384,0 chrXV 693683 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=25.89;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3418,372,0 chrXV 693793 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.47;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3062,351,0 chrXV 693851 . T G 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=3.386;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.291;QD=20.52;ReadPosRankSum=1.710;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3254,378,0 chrXV 693870 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=6.801;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.833;QD=19.86;ReadPosRankSum=2.365;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2952,339,0 chrXV 693898 . A G 2678 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.7409;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.14;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2711,303,0 chrXV 693923 . T G 2680 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.01;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2713,303,0 chrXV 693989 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.62;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3545,405,0 chrXV 694061 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=24.75;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2929,327,0 chrXV 694141 . A G 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.9162;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.946;QD=20.57;ReadPosRankSum=1.441;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2481,282,0 chrXV 694231 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=22.70;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2644,294,0 chrXV 694271 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=18.72;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2597,282,0 chrXV 694277 . A T 2465 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=18.53;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2498,279,0 chrXV 694301 . G C 2186 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.21;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2219,255,0 chrXV 694394 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.21;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2609,285,0 chrXV 694427 . C G 2230 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=20.09;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2263,258,0 chrXV 694439 . G A 2289 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=21.59;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2322,258,0 chrXV 694471 . T C 2202 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=20.58;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2235,258,0 chrXV 694479 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=20.59;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2360,264,0 chrXV 694591 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.42;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2539,276,0 chrXV 694619 . A G 2300 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.50;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2333,264,0 chrXV 695116 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.91;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4055,456,0 chrXV 695150 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.95;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3907,444,0 chrXV 695231 . A G 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.225;QD=22.94;ReadPosRankSum=1.710;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3532,402,0 chrXV 696182 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.9053;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.495;QD=21.50;ReadPosRankSum=1.683;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3043,345,0 chrXV 696392 . C G 3498.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.48;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3498,405,0 chrXV 696614 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.10;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3536,387,0 chrXV 697062 . T C 2824 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.53;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2857,324,0 chrXV 697446 . G C 3165 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.93;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3198,363,0 chrXV 697548 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.66;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2086,237,0 chrXV 697557 . T C 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.114;QD=18.61;ReadPosRankSum=1.704;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2304,270,0 chrXV 697884 . G C 2231 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.74;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2264,258,0 chrXV 697906 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.08;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2270,258,0 chrXV 698025 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4503;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.666;QD=22.09;ReadPosRankSum=1.699;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2330,264,0 chrXV 698124 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=22.02;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2521,288,0 chrXV 698212 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.47;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2639,303,0 chrXV 698306 . T C 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.130;DP=97;Dels=0.00;FS=5.190;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.188;QD=15.11;ReadPosRankSum=3.366;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1499,174,0 chrXV 698423 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.78;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2982,324,0 chrXV 698442 . C G 2862 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.59;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2895,339,0 chrXV 698570 . A T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.98;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3473,381,0 chrXV 698579 . T G 3177 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.76;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3210,366,0 chrXV 698723 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=3.795;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.130;QD=22.85;ReadPosRankSum=1.702;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2661,297,0 chrXV 698772 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.38;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3608,390,0 chrXV 698870 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.29;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3793,420,0 chrXV 700016 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.1751;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.03;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4054,459,0 chrXV 700091 . C T 4640.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.67;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4640,522,0 chrXV 700142 . C G 4440.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.09;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4440,507,0 chrXV 700294 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.3154;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.95;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3741,426,0 chrXV 700407 . A T 3087 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.44;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3120,348,0 chrXV 700484 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.32;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1963,216,0 chrXV 700514 . A G 1977 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2010,231,0 chrXV 700551 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2032,222,0 chrXV 700804 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.74;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2077,231,0 chrXV 700853 . A G 2173 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.70;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2206,249,0 chrXV 700856 . A G 2162 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.79;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2195,249,0 chrXV 700946 . T G 2999 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.89;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3032,357,0 chrXV 700948 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-1.528;QD=21.28;ReadPosRankSum=2.377;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2969,345,0 chrXV 700968 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.60;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2898,339,0 chrXV 701028 . T C 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.026;DP=141;Dels=0.00;FS=6.898;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.654;QD=17.70;ReadPosRankSum=0.549;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2528,269,0 chrXV 701208 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.25;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4185,462,0 chrXV 701218 . C A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.95;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4177,450,0 chrXV 701280 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.31;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3181,345,0 chrXV 701300 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.924;QD=19.59;ReadPosRankSum=1.668;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3226,375,0 chrXV 701466 . G A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=21.0669;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.46;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4377,480,0 chrXV 701569 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.076;QD=23.17;ReadPosRankSum=1.691;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3985,456,0 chrXV 701667 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.6510;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.30;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3715,402,0 chrXV 701704 . G T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.49;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4019,441,0 chrXV 701748 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.85;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3982,450,0 chrXV 701772 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.3401;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.82;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3667,405,0 chrXV 701808 . A G 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.477;QD=16.66;ReadPosRankSum=1.709;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2515,294,0 chrXV 701852 . T C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=123;Dels=0.00;FS=9.402;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.110;QD=19.77;ReadPosRankSum=2.350;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2465,279,0 chrXV 702223 . A C 3334.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.37;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3334,372,0 chrXV 702262 . T G 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.092;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.024;QD=21.59;ReadPosRankSum=1.334;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3756,416,0 chrXV 702337 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=20.10;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2204,252,0 chrXV 702338 . T A 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=4.206;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.545;QD=20.30;ReadPosRankSum=1.636;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2225,249,0 chrXV 702475 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.116;DP=142;Dels=0.00;FS=2.789;HaplotypeScore=14.8157;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.484;QD=21.13;ReadPosRankSum=2.397;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3034,354,0 chrXV 702546 . G T 2923 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.44;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2956,318,0 chrXV 702553 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.50;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3194,342,0 chrXV 702696 . G T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.15;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3589,396,0 chrXV 702945 . A G 2461 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.34;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2494,285,0 chrXV 702970 . A G 2401 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.70;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2434,279,0 chrXV 703091 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.66;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3428,375,0 chrXV 703092 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.70;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3211,363,0 chrXV 703124 . C G 2708 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.02;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2741,315,0 chrXV 703302 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.49;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2411,267,0 chrXV 703324 . A G 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=93;Dels=0.00;FS=2.957;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-2.129;QD=19.94;ReadPosRankSum=2.396;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1887,216,0 chrXV 703359 . T G 1781 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.79;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1814,204,0 chrXV 703373 . C G 1850 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.27;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1883,216,0 chrXV 703419 . A G 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=3.416;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.031;QD=21.02;ReadPosRankSum=1.639;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2429,276,0 chrXV 710179 . G T 542 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=15.06;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:575,66,0 chrXV 710181 . G A 572 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=15.89;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:605,66,0 chrXV 710182 . A T 552 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=15.33;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:585,66,0 chrXV 710305 . A G 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.043;DP=85;Dels=0.00;FS=2.846;HaplotypeScore=79.8211;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;MQRankSum=-0.333;QD=20.39;ReadPosRankSum=2.363;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1766,204,0 chrXV 710553 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=24.01;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2530,285,0 chrXV 710606 . T A 2214 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=18.45;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2247,246,0 chrXV 710609 . T C 2096 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.416;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;MQRankSum=-0.186;QD=18.71;ReadPosRankSum=1.701;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2129,243,0 chrXV 710610 . C T 2102 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=18.94;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2135,243,0 chrXV 710643 . T A 2199 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=17.88;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2232,246,0 chrXV 710657 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=17.05;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1926,213,0 chrXV 710695 . A T 2351 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.37;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2384,258,0 chrXV 710699 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.37;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2405,261,0 chrXV 710723 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.39;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1972,222,0 chrXV 710864 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=22.19;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1209,132,0 chrXV 710905 . G T 903 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.07;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:936,102,0 chrXV 711230 . C A 1373 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.96;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1406,150,0 chrXV 711252 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.78;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1460,168,0 chrXV 711322 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.10;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1805,210,0 chrXV 711373 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1720,192,0 chrXV 711533 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.31;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1567,177,0 chrXV 711538 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.63;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1449,168,0 chrXV 711743 . C A 2467 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.03;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2500,285,0 chrXV 712214 . C G 3027 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.47;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3060,345,0 chrXV 712306 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.67;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2959,333,0 chrXV 712727 . C A 410 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=14.64;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:51:443,51,0 chrXV 712794 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.88;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2098,237,0 chrXV 712945 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3246,363,0 chrXV 712982 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2858,321,0 chrXV 713054 . A G 4731.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.80;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4731,531,0 chrXV 713081 . G A 5193.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.82;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5193,570,0 chrXV 713303 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.84;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2256,255,0 chrXV 713325 . G A 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.411;DP=109;Dels=0.00;FS=3.174;HaplotypeScore=7.7504;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.411;QD=17.74;ReadPosRankSum=-0.834;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:1967,197,0 chrXV 713519 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=110;Dels=0.00;FS=3.338;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.606;QD=22.82;ReadPosRankSum=1.701;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2543,294,0 chrXV 713926 . T C 2097 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2130,246,0 chrXV 714243 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.32;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2441,273,0 chrXV 714318 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.92;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1546,168,0 chrXV 714391 . G C 2247 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7668;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.03;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2280,264,0 chrXV 714582 . T A 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.026;QD=23.66;ReadPosRankSum=1.655;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3204,363,0 chrXV 715235 . T C 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;DP=66;Dels=0.00;FS=7.229;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.430;QD=18.62;ReadPosRankSum=2.375;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1262,141,0 chrXV 715572 . A T 1579 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.88;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1612,174,0 chrXV 715611 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.24;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2032,225,0 chrXV 715668 . T A 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.149;QD=25.33;ReadPosRankSum=1.696;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2465,267,0 chrXV 715815 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.85;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4045,456,0 chrXV 716103 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.22;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3802,438,0 chrXV 716400 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.03;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3680,417,0 chrXV 716849 . A G 2355 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.3880;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.70;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,133:141:99:2388,273,0 chrXV 716951 . G C 3192 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=59.0507;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.33;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,150:155:99:3225,366,0 chrXV 717052 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=18.3899;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.72;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3247,360,0 chrXV 717148 . G A 4775.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.4913;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.00;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4775,519,0 chrXV 717277 . T C 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=214;Dels=0.00;FS=3.028;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.167;QD=21.36;ReadPosRankSum=2.415;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4571,522,0 chrXV 717433 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.5914;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.40;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4772,543,0 chrXV 717703 . T C 5414.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.75;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5414,624,0 chrXV 717973 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.38;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3984,435,0 chrXV 718015 . A T 5007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=216;Dels=0.00;FS=7.346;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.574;QD=23.18;ReadPosRankSum=2.404;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5007,558,0 chrXV 718180 . T C 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=177;Dels=0.00;FS=3.857;HaplotypeScore=15.7053;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.426;QD=21.67;ReadPosRankSum=1.712;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3836,435,0 chrXV 718286 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.47;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3414,387,0 chrXV 718397 . G T 1808 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.52;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1841,201,0 chrXV 718454 . T C 1333 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.83;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1366,156,0 chrXV 718493 . C T 875 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:908,105,0 chrXV 718599 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.19;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:904,99,0 chrXV 718752 . T C 3039 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3072,348,0 chrXV 719433 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.9819;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.62;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4275,483,0 chrXV 720238 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=17.9308;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.512;QD=18.51;ReadPosRankSum=1.710;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2994,351,0 chrXV 720426 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=6.7923;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.11;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2668,300,0 chrXV 720440 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=162;Dels=0.00;FS=3.119;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.620;QD=18.21;ReadPosRankSum=1.711;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:2983,339,0 chrXV 720518 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=188;Dels=0.00;FS=2.670;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.374;QD=20.25;ReadPosRankSum=2.423;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3807,438,0 chrXV 720533 . A C 3334.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.50;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3334,375,0 chrXV 720539 . G T 3051 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.60;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3084,342,0 chrXV 720674 . T C 3088 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.49;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3121,357,0 chrXV 720746 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=19.09;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3379,369,0 chrXV 720752 . A G 3138 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=18.24;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3171,363,0 chrXV 720799 . A G 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.2607;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.237;QD=19.01;ReadPosRankSum=1.657;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2695,309,0 chrXV 721121 . C T 5715.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.23;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:5715,624,0 chrXV 721240 . A T 4689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=223;Dels=0.00;FS=5.729;HaplotypeScore=19.1562;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.392;QD=21.03;ReadPosRankSum=2.933;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:4689,513,0 chrXV 721322 . G A 5404.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.3209;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.79;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5404,621,0 chrXV 721370 . A C 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=191;Dels=0.00;FS=5.408;HaplotypeScore=8.0596;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.195;QD=20.67;ReadPosRankSum=2.890;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:3948,465,0 chrXV 721661 . A C 2854 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.30;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2887,333,0 chrXV 721768 . C A 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=76;Dels=0.00;FS=2.770;HaplotypeScore=68.5594;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;MQRankSum=0.925;QD=17.66;ReadPosRankSum=2.385;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1375,156,0 chrXV 721815 . C T 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4304;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;MQRankSum=-0.635;QD=11.18;ReadPosRankSum=1.149;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1162,129,0 chrXV 721920 . A G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.013;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.5781;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.383;QD=23.48;ReadPosRankSum=1.168;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3062,327,0 chrXV 721957 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.95;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3242,351,0 chrXV 722033 . A C 3990.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=24.18;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3990,459,0 chrXV 722071 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.48;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3911,459,0 chrXV 722470 . C A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0966;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.00;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3586,408,0 chrXV 722554 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.709;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.9057;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.391;QD=19.50;ReadPosRankSum=1.409;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:3783,416,0 chrXV 722718 . A C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.95;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3331,378,0 chrXV 722724 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=168;Dels=0.00;FS=5.294;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.151;QD=18.98;ReadPosRankSum=2.958;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3222,366,0 chrXV 723226 . A C 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.391;QD=19.87;ReadPosRankSum=1.715;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4054,459,0 chrXV 723816 . T C 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=209;Dels=0.00;FS=3.424;HaplotypeScore=16.7021;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.970;QD=21.18;ReadPosRankSum=1.666;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4427,507,0 chrXV 723942 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.4050;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.68;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4011,450,0 chrXV 724281 . T A 4875.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4875,537,0 chrXV 724989 . A G 1833 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1866,210,0 chrXV 725534 . T A 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.620;QD=20.50;ReadPosRankSum=1.603;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2780,312,0 chrXV 725550 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.64;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2760,300,0 chrXV 725863 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.7228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2791,318,0 chrXV 726404 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=3.399;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.138;QD=22.56;ReadPosRankSum=1.666;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2424,282,0 chrXV 726712 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.70;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2190,237,0 chrXV 726713 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.48;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2170,237,0 chrXV 726893 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.39;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2473,282,0 chrXV 727008 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.09;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3718,405,0 chrXV 727477 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=4.591;HaplotypeScore=9.0217;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.910;QD=24.03;ReadPosRankSum=1.703;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2868,321,0 chrXV 727507 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=5.177;HaplotypeScore=6.4827;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.701;QD=22.92;ReadPosRankSum=1.701;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2600,300,0 chrXV 727572 . G C 2011 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.86;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2044,240,0 chrXV 727650 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.60;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2677,300,0 chrXV 727823 . C G 2764 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.42;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2797,324,0 chrXV 727969 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.2128;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.74;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2952,321,0 chrXV 728063 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.22;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2448,264,0 chrXV 728105 . A G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=4.051;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.284;QD=19.20;ReadPosRankSum=1.704;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2394,276,0 chrXV 728111 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.59;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2565,279,0 chrXV 728708 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.72;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2574,279,0 chrXV 728723 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.95;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2667,288,0 chrXV 728798 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.76;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2491,279,0 chrXV 729380 . A T 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.921;HaplotypeScore=10.4361;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.889;QD=22.68;ReadPosRankSum=1.709;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3380,375,0 chrXV 729483 . T G 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=186;Dels=0.00;FS=7.694;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.350;QD=23.23;ReadPosRankSum=2.397;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4321,501,0 chrXV 729585 . T C 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=4.028;HaplotypeScore=14.2734;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.982;QD=22.87;ReadPosRankSum=1.706;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3143,357,0 chrXV 729765 . A C 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.030;DP=102;Dels=0.00;FS=2.146;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.810;QD=19.91;ReadPosRankSum=1.830;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:3,98:102:99:2064,212,0 chrXV 729766 . G T 2179 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.36;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2212,243,0 chrXV 729813 . G C 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=3.512;HaplotypeScore=5.1318;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=1.102;QD=18.95;ReadPosRankSum=0.472;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2118,228,0 chrXV 729831 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.38;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1853,219,0 chrXV 729941 . A T 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.869;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.258;QD=23.85;ReadPosRankSum=1.703;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2824,315,0 chrXV 730011 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.32;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3049,339,0 chrXV 730479 . G A 5065.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.8821;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.02;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5065,555,0 chrXV 730677 . C T 3971.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.69;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3971,429,0 chrXV 730821 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.0555;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.55;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3269,369,0 chrXV 731576 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.85;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3702,411,0 chrXV 731874 . A T 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=135;Dels=0.00;FS=3.379;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.091;QD=21.31;ReadPosRankSum=1.629;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2910,324,0 chrXV 732609 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3886,450,0 chrXV 733385 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=3.930;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.441;QD=22.50;ReadPosRankSum=1.653;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3003,345,0 chrXV 733489 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4927;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.21;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3643,411,0 chrXV 733608 . A G 3061 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.41;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3094,348,0 chrXV 733667 . C G 2957 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.47;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2990,345,0 chrXV 733898 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=3.514;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.024;QD=20.66;ReadPosRankSum=1.708;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3050,360,0 chrXV 733953 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.74;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3956,447,0 chrXV 734650 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.63;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1601,183,0 chrXV 734684 . C T 1394 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.12;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1427,156,0 chrXV 735107 . T A 2688 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.5894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2721,291,0 chrXV 735184 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3299,366,0 chrXV 735517 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.60;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2299,261,0 chrXV 735547 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.07;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2716,297,0 chrXV 735678 . T C 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=3.452;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.658;QD=19.47;ReadPosRankSum=1.620;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1844,213,0 chrXV 735877 . G T 3010 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.30;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3043,336,0 chrXV 735970 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=3.321;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.418;QD=21.63;ReadPosRankSum=1.672;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2564,294,0 chrXV 736690 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.15;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4237,462,0 chrXV 736963 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.91;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3322,375,0 chrXV 737103 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.30;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3110,345,0 chrXV 737266 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.972;QD=21.16;ReadPosRankSum=1.665;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3280,366,0 chrXV 737281 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.54;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3295,372,0 chrXV 737295 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=150;Dels=0.00;FS=3.039;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.872;QD=20.21;ReadPosRankSum=2.333;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3065,351,0 chrXV 737331 . C T 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;DP=122;Dels=0.00;FS=4.143;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.767;QD=21.68;ReadPosRankSum=-1.363;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2678,270,0 chrXV 737496 . G A 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.160;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.9200;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.902;QD=21.69;ReadPosRankSum=0.100;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2722,279,0 chrXV 737961 . A T 2966 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.64;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2999,333,0 chrXV 738026 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=3.945;HaplotypeScore=12.1783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.620;QD=20.66;ReadPosRankSum=1.704;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2595,297,0 chrXV 738108 . C A 2627 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.25;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2660,297,0 chrXV 738277 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=23.46;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3247,357,0 chrXV 738617 . A T 667.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=16.68;ReadPosRankSum=3.550;SB=-2.806e+01 GT:AD:DP:GQ:PL 1/1:5,35:40:21:700,21,0 chrXV 738654 . A T 848 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.19;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:96:881,96,0 chrXV 738845 . C T 943 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:976,108,0 chrXV 739134 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.9399;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.48;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2482,273,0 chrXV 739347 . T C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=129;Dels=0.00;FS=6.111;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.173;QD=19.45;ReadPosRankSum=2.914;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2542,291,0 chrXV 739350 . T C 2497 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.14;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2530,285,0 chrXV 739494 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.59;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3303,360,0 chrXV 739749 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.91;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3080,348,0 chrXV 740202 . A G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.395;HaplotypeScore=8.7121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.264;QD=21.87;ReadPosRankSum=1.703;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2635,312,0 chrXV 740490 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.79;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2312,249,0 chrXV 741072 . A T 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=197;Dels=0.00;FS=3.914;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.273;QD=18.94;ReadPosRankSum=1.714;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3732,414,0 chrXV 741418 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=5.154;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.292;QD=19.80;ReadPosRankSum=1.710;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3102,369,0 chrXV 741440 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-0.505;QD=18.82;ReadPosRankSum=2.406;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3194,363,0 chrXV 741453 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.10;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3146,357,0 chrXV 741647 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.628;QD=22.42;ReadPosRankSum=1.681;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4574,531,0 chrXV 741916 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.4970;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.302;QD=22.02;ReadPosRankSum=1.705;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2807,321,0 chrXV 741954 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.02;FS=0.000;HaplotypeScore=12.2598;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.90;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2242,255,0 chrXV 742253 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.8362;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.47;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3253,366,0 chrXV 742344 . G C 2622 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2655,309,0 chrXV 742379 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.93;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3290,372,0 chrXV 742493 . T A 18.03 LowQual;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=53.26;MQ0=0;QD=0.19;SB=14.00 GT:AD:DP:GQ:PL 1/1:0,4:94:6:49,6,0 chrXV 742502 . A C 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.055;QD=19.91;ReadPosRankSum=1.550;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1924,225,0 chrXV 742604 . G C 2618 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.38;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2651,303,0 chrXV 742716 . T G 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.375;QD=22.80;ReadPosRankSum=2.354;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2952,336,0 chrXV 743206 . G C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,142:148:99:3321,378,0 chrXV 743254 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.599;DP=161;Dels=0.00;FS=10.932;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.952;QD=21.45;ReadPosRankSum=3.795;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:5,155:161:99:3454,393,0 chrXV 743338 . G A 4336.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4336,480,0 chrXV 743656 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4669,516,0 chrXV 743882 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.34;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4178,450,0 chrXV 744303 . C A 2430 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=23.14;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2463,264,0 chrXV 744491 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=12.7595;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=19.56;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2146,246,0 chrXV 744503 . T C 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=114;Dels=0.00;FS=3.043;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-0.270;QD=17.25;ReadPosRankSum=2.407;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2000,225,0 chrXV 744522 . A G 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=111;Dels=0.00;FS=6.897;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;MQRankSum=-1.465;QD=14.97;ReadPosRankSum=0.347;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:1695,198,0 chrXV 744523 . T G 1742 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=15.55;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1775,204,0 chrXV 744578 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=1.221;QD=17.97;ReadPosRankSum=1.164;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2243,261,0 chrXV 744600 . T A 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=145;Dels=0.00;FS=8.312;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-1.026;QD=20.38;ReadPosRankSum=2.399;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2988,330,0 chrXV 744706 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=157;Dels=0.00;FS=2.801;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.540;QD=21.73;ReadPosRankSum=2.246;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3411,384,0 chrXV 745114 . G T 2525 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.36;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2558,291,0 chrXV 745138 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.86;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1999,219,0 chrXV 745180 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.59;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1650,180,0 chrXV 745192 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.90;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1572,180,0 chrXV 745265 . T A 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.163;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.299;QD=18.54;ReadPosRankSum=1.702;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2184,246,0 chrXV 745324 . C T 490 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.03;FS=0.000;HaplotypeScore=31.5139;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=5.70;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:83:57:523,57,0 chrXV 745547 . A T 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=136;Dels=0.00;FS=3.379;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.655;QD=22.21;ReadPosRankSum=1.706;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3053,333,0 chrXV 745659 . G T 2652 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.2360;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.88;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2685,300,0 chrXV 745778 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=148;Dels=0.00;FS=5.935;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.171;QD=22.51;ReadPosRankSum=2.952;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3331,378,0 chrXV 745929 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.87;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2892,327,0 chrXV 746313 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5484;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.70;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2416,264,0 chrXV 746695 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2186,237,0 chrXV 746845 . T C 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7629;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.684;QD=21.10;ReadPosRankSum=1.199;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3092,354,0 chrXV 747091 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.189;HaplotypeScore=12.9878;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.032;QD=22.36;ReadPosRankSum=1.715;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4449,501,0 chrXV 747125 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=16.7316;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.387;QD=21.05;ReadPosRankSum=1.714;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4041,468,0 chrXV 747490 . C A 3152 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.70;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3185,354,0 chrXV 747519 . G T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.33;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3289,363,0 chrXV 747546 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.91;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3436,375,0 chrXV 747612 . C G 3373.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.26;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3373,384,0 chrXV 747648 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.65;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3312,378,0 chrXV 747741 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.92;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3851,435,0 chrXV 748004 . A C 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.5433;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.007;QD=20.15;ReadPosRankSum=1.678;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:3888,441,0 chrXV 748029 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.092;QD=19.03;ReadPosRankSum=2.421;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3311,375,0 chrXV 748224 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.44;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2861,330,0 chrXV 748445 . A G 2767 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.14;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2800,318,0 chrXV 748608 . T A 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.6923;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.304;QD=21.22;ReadPosRankSum=1.690;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3522,396,0 chrXV 748698 . C G 3586.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.22;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3586,423,0 chrXV 748712 . C G 3311.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.03;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3311,393,0 chrXV 748863 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.031;QD=19.90;ReadPosRankSum=1.713;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3543,402,0 chrXV 749026 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.378;QD=22.01;ReadPosRankSum=1.692;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3830,441,0 chrXV 749079 . G A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.49;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3644,411,0 chrXV 749636 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.20;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3286,360,0 chrXV 749731 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.81;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3429,387,0 chrXV 749763 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9642;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.047;QD=25.22;ReadPosRankSum=1.637;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3732,408,0 chrXV 750083 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=3.027;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.885;QD=21.28;ReadPosRankSum=2.284;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3182,375,0 chrXV 750183 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.28;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3453,381,0 chrXV 750300 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=143;Dels=0.00;FS=7.098;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.061;QD=23.01;ReadPosRankSum=2.346;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3290,378,0 chrXV 751330 . C G 2869 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.95;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2902,336,0 chrXV 751374 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.70;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3256,360,0 chrXV 751433 . A G 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.150;QD=20.42;ReadPosRankSum=1.677;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2585,291,0 chrXV 751442 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=18.62;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2398,270,0 chrXV 751445 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=18.40;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2370,258,0 chrXV 751476 . T G 2013 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=15.25;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2046,237,0 chrXV 751511 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=14.74;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2097,240,0 chrXV 751523 . C T 2326 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=16.04;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2359,264,0 chrXV 751571 . C A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5036;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.55;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3309,372,0 chrXV 751727 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.3161;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.17;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3702,411,0 chrXV 752002 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.83;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2889,315,0 chrXV 752064 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.62;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2537,282,0 chrXV 752146 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=3.228;HaplotypeScore=13.7176;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.514;QD=22.10;ReadPosRankSum=1.708;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3193,366,0 chrXV 752184 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.796;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.511;QD=22.05;ReadPosRankSum=1.707;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3120,360,0 chrXV 752228 . C G 2582 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.65;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2615,297,0 chrXV 752247 . T C 2060 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.20;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2093,237,0 chrXV 752248 . T C 2003 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.23;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2036,228,0 chrXV 752381 . G T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.2583;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.55;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3337,375,0 chrXV 752415 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.27;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3407,402,0 chrXV 752538 . T C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.841;QD=22.39;ReadPosRankSum=1.707;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3100,354,0 chrXV 752580 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.01;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3202,354,0 chrXV 752598 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-1.221;QD=19.60;ReadPosRankSum=1.709;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2953,336,0 chrXV 752616 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=17.89;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3002,348,0 chrXV 752721 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.660;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.1894;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.235;QD=21.74;ReadPosRankSum=0.235;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2424,258,0 chrXV 752751 . A G 2941 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.34;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2974,336,0 chrXV 753081 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.17;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2468,273,0 chrXV 753082 . A G 2345 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.46;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2378,273,0 chrXV 753645 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.99;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4069,459,0 chrXV 753808 . T C 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=16.2760;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.861;QD=23.09;ReadPosRankSum=1.712;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3972,453,0 chrXV 753848 . G T 4689.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.56;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4689,528,0 chrXV 754003 . T G 3528.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.00;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3528,402,0 chrXV 754376 . T G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.082;QD=21.50;ReadPosRankSum=1.666;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2334,267,0 chrXV 754590 . A C 2627 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.3435;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.53;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2660,312,0 chrXV 754721 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=171;Dels=0.00;FS=5.263;HaplotypeScore=17.1889;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.289;QD=22.72;ReadPosRankSum=-1.010;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,167:171:99:3885,426,0 chrXV 754853 . C G 3526.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.50;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3526,396,0 chrXV 754893 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.48;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3776,423,0 chrXV 754908 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.21;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3953,435,0 chrXV 755003 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0253;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.58;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3612,405,0 chrXV 755099 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=19.83;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2314,252,0 chrXV 755104 . T C 2226 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=19.87;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2259,258,0 chrXV 755116 . T C 2034 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=18.49;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2067,237,0 chrXV 755132 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=18.50;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2105,231,0 chrXV 755170 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.75;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2470,273,0 chrXV 755263 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.926;QD=23.15;ReadPosRankSum=1.705;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3043,345,0 chrXV 755321 . G T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8195;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.28;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3283,366,0 chrXV 755705 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9667;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.09;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4110,453,0 chrXV 755735 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.47;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4291,495,0 chrXV 755771 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.32;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4040,447,0 chrXV 756074 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.85;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4388,480,0 chrXV 756307 . A T 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=160;Dels=0.00;FS=3.013;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.315;QD=21.71;ReadPosRankSum=2.342;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3473,390,0 chrXV 756403 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.55;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2836,312,0 chrXV 756575 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3352,360,0 chrXV 756611 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.0499;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.03;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3547,387,0 chrXV 756659 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.30;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3704,420,0 chrXV 756728 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3777,432,0 chrXV 756913 . A G 3772.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.58;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3772,426,0 chrXV 757291 . A C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.69;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3789,432,0 chrXV 757318 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.00;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3726,408,0 chrXV 757677 . C T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.60;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3729,405,0 chrXV 757746 . A G 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=213;Dels=0.00;FS=2.846;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.666;QD=21.48;ReadPosRankSum=2.415;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4575,513,0 chrXV 757882 . A G 4508.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.88;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4508,510,0 chrXV 757952 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6203;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.87;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3139,345,0 chrXV 758153 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.0460;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=19.41;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2653,297,0 chrXV 758539 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4409,498,0 chrXV 759381 . A G 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.371;QD=22.58;ReadPosRankSum=1.639;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2562,294,0 chrXV 759410 . A G 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.495;QD=21.10;ReadPosRankSum=2.396;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1974,228,0 chrXV 759566 . A T 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.064;DP=64;Dels=0.00;FS=2.808;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.019;QD=21.70;ReadPosRankSum=2.373;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1422,156,0 chrXV 759629 . T C 911 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.52;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:944,108,0 chrXV 759647 . T A 439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;DP=47;Dels=0.04;FS=2.847;HaplotypeScore=4.5311;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=0.193;QD=9.34;ReadPosRankSum=2.010;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:2,43:45:51:472,51,0 chrXV 759919 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.689;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-0.490;QD=19.87;ReadPosRankSum=1.710;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3213,378,0 chrXV 759937 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.07;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3687,405,0 chrXV 759985 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.754;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.097;QD=18.39;ReadPosRankSum=1.714;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:3641,408,0 chrXV 759997 . G T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.8434;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.81;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3793,432,0 chrXV 760099 . C T 5379.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=21.35;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5379,612,0 chrXV 760105 . C T 5361.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.1740;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.27;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5361,591,0 chrXV 760240 . C T 7181.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=22.8683;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.25;SB=-3.915e+03 GT:AD:DP:GQ:PL 1/1:0,336:338:99:7181,804,0 chrXV 760339 . G A 4745.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.28;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4745,534,0 chrXV 760354 . A G 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=237;Dels=0.00;FS=2.652;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=0.368;QD=18.65;ReadPosRankSum=2.398;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:4419,501,0 chrXV 760366 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=234;Dels=0.00;FS=2.612;HaplotypeScore=8.9269;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.131;QD=18.55;ReadPosRankSum=2.324;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:4341,495,0 chrXV 761321 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.85;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1475,168,0 chrXV 761947 . C T 5464.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.35;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5464,600,0 chrXV 762072 . G T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.2711;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.37;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3996,441,0 chrXV 762399 . T C 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.190;QD=23.23;ReadPosRankSum=1.711;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3810,432,0 chrXV 762530 . G C 4550.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.3384;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.75;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4550,525,0 chrXV 762692 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.3304;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.07;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4403,501,0 chrXV 763131 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=22.3659;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.59;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3546,390,0 chrXV 763262 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8270;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.27;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3363,378,0 chrXV 763613 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.56;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3271,360,0 chrXV 763671 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=4.801;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.147;QD=19.39;ReadPosRankSum=1.685;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2902,327,0 chrXV 763679 . C G 2642 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.85;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:2675,309,0 chrXV 763784 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.34;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2834,315,0 chrXV 763826 . T C 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.759;QD=21.41;ReadPosRankSum=1.703;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2667,306,0 chrXV 763868 . T C 2880 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.33;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2913,327,0 chrXV 763915 . T A 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.319;HaplotypeScore=11.2987;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.119;QD=21.89;ReadPosRankSum=1.679;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2901,321,0 chrXV 763953 . T C 2980 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=19.10;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3013,348,0 chrXV 763970 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=175;Dels=0.00;FS=5.745;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=-0.960;QD=17.55;ReadPosRankSum=2.902;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3105,357,0 chrXV 763973 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.172;DP=178;Dels=0.00;FS=7.849;HaplotypeScore=5.1934;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=0.243;QD=17.05;ReadPosRankSum=0.923;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3068,354,0 chrXV 764062 . G A 5243.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.62;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5243,576,0 chrXV 764138 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.605;QD=20.65;ReadPosRankSum=1.671;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3552,402,0 chrXV 764174 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;MQRankSum=-0.871;QD=19.56;ReadPosRankSum=1.713;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3658,426,0 chrXV 764185 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=4.534;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=0.035;QD=19.10;ReadPosRankSum=1.644;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3744,432,0 chrXV 764224 . T C 4613.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.0661;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.14;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4613,528,0 chrXV 764348 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.3234;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.14;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3379,369,0 chrXV 764378 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1219;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.97;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2729,297,0 chrXV 764381 . A G 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=137;Dels=0.00;FS=6.083;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-0.082;QD=18.40;ReadPosRankSum=2.933;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:2554,288,0 chrXV 764453 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.23;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3846,420,0 chrXV 764588 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.29;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2730,312,0 chrXV 764698 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.49;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2805,306,0 chrXV 764789 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.67;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2549,282,0 chrXV 764849 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.55;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2491,276,0 chrXV 765140 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.33;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3137,345,0 chrXV 765404 . T C 4942.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4942,555,0 chrXV 765690 . A C 1939 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1972,225,0 chrXV 766151 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.39;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3874,429,0 chrXV 766208 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.0761;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.36;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3291,366,0 chrXV 766250 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=171;Dels=0.00;FS=2.579;HaplotypeScore=11.8968;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-2.438;QD=19.51;ReadPosRankSum=2.959;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3336,384,0 chrXV 766295 . T A 3001 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.01;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3034,342,0 chrXV 766307 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.70;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2987,336,0 chrXV 766370 . T C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.545;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.226;QD=18.79;ReadPosRankSum=1.707;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2645,312,0 chrXV 766376 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.58;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2774,306,0 chrXV 766469 . G A 2287 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.20;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2320,258,0 chrXV 766612 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.81;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1519,174,0 chrXV 766673 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=21.48;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:978,111,0 chrXV 766681 . G A 866 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:899,102,0 chrXV 766799 . G A 594 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,25:26:72:627,72,0 chrXV 766910 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.69;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1811,207,0 chrXV 766986 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.0037;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.120;QD=22.76;ReadPosRankSum=2.316;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2127,249,0 chrXV 767370 . T A 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=166;Dels=0.00;FS=2.913;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=0.215;QD=18.54;ReadPosRankSum=2.316;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3111,336,0 chrXV 767377 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=17.72;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3046,336,0 chrXV 767401 . T C 3122 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=17.74;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3155,360,0 chrXV 767815 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=23.94;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3950,435,0 chrXV 767852 . C G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.15;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3819,429,0 chrXV 767987 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.7906;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=14.49;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2076,237,0 chrXV 767992 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=143;Dels=0.01;FS=6.033;HaplotypeScore=13.4849;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;MQRankSum=1.544;QD=14.62;ReadPosRankSum=2.950;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:2124,237,0 chrXV 768001 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=15.58;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2495,282,0 chrXV 768090 . T C 2283 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.68;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2316,261,0 chrXV 768226 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.80;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1663,192,0 chrXV 768428 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.43;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1897,207,0 chrXV 768429 . T C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=1.142;QD=20.62;ReadPosRankSum=1.653;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1848,213,0 chrXV 768642 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=228;Dels=0.00;FS=2.406;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=1.470;QD=18.12;ReadPosRankSum=3.414;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:4,222:228:99:4132,474,0 chrXV 768822 . G C 6230.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=18.3966;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.63;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:6230,728,0 chrXV 768978 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.89;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5082,570,0 chrXV 769002 . A G 4774.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.03;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4774,558,0 chrXV 769092 . C T 5875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=9.0715;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.732;QD=23.79;ReadPosRankSum=-0.915;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5875,648,0 chrXV 769431 . C T 5571.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=12.3950;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.93;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:5571,624,0 chrXV 769458 . C T 4963.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.48;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4963,555,0 chrXV 769620 . T C 3791.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=22.1728;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.91;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3791,432,0 chrXV 770027 . A T 2072 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=23.02;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2105,231,0 chrXV 770037 . T C 1699 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=20.23;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1732,195,0 chrXV 770068 . A G 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=8.139;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=-0.530;QD=19.37;ReadPosRankSum=2.393;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1699,189,0 chrXV 770094 . A C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=4.517;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=-0.269;QD=16.59;ReadPosRankSum=1.702;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1958,225,0 chrXV 770102 . A G 1889 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=14.87;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1922,219,0 chrXV 770118 . A C 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=4.187;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=-1.657;QD=15.60;ReadPosRankSum=1.707;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2201,252,0 chrXV 770179 . T C 2242 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=16.73;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2275,258,0 chrXV 770183 . G A 2268 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=18.74;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2301,255,0 chrXV 770184 . G A 2290 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=18.93;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2323,255,0 chrXV 770215 . T G 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=-1.483;QD=17.74;ReadPosRankSum=1.704;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2251,258,0 chrXV 770241 . A C 2285 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.3421;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=17.58;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2318,267,0 chrXV 770280 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=158;Dels=0.00;FS=11.208;HaplotypeScore=10.8514;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.647;QD=21.37;ReadPosRankSum=2.930;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3377,384,0 chrXV 770508 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.573;DP=136;Dels=0.00;FS=7.473;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.428;QD=19.62;ReadPosRankSum=3.770;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:5,131:136:99:2701,303,0 chrXV 770539 . T C 2572 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.98;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2605,294,0 chrXV 770554 . T C 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=112;Dels=0.00;FS=5.013;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.047;QD=18.00;ReadPosRankSum=1.701;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2049,237,0 chrXV 770614 . A T 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=111;Dels=0.02;FS=0.000;HaplotypeScore=52.4391;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.793;QD=11.27;ReadPosRankSum=1.700;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1284,147,0 chrXV 770734 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.155;QD=24.35;ReadPosRankSum=1.547;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2760,315,0 chrXV 770868 . A G 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=5.076;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.617;QD=23.19;ReadPosRankSum=1.713;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4127,465,0 chrXV 771765 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.34;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2942,324,0 chrXV 771781 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.83;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2650,294,0 chrXV 772232 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1436,159,0 chrXV 773455 . A G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=111;Dels=0.00;FS=5.901;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.918;QD=20.42;ReadPosRankSum=2.864;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2300,258,0 chrXV 773833 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.12;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3714,414,0 chrXV 773941 . A G 2420 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=21.23;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2453,276,0 chrXV 773959 . T C 2098 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.61;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2131,243,0 chrXV 774085 . T G 1814 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.61;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1847,210,0 chrXV 774112 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=20.85;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1576,174,0 chrXV 774129 . C T 1166 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=17.94;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1199,138,0 chrXV 774148 . A C 1062 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=19.67;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1095,129,0 chrXV 774153 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.00;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1104,123,0 chrXV 774203 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2763;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.64;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1310,141,0 chrXV 774251 . A T 1225 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.49;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1258,138,0 chrXV 774269 . C T 1119 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.31;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1152,126,0 chrXV 774323 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.767;QD=22.32;ReadPosRankSum=1.644;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1796,207,0 chrXV 774441 . T G 2400 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.43;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2433,282,0 chrXV 774457 . G C 2197 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.53;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2230,255,0 chrXV 774673 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.9021;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.665;QD=22.32;ReadPosRankSum=1.710;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3571,408,0 chrXV 774742 . A G 2863 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.96;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2896,327,0 chrXV 774747 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.92;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2981,324,0 chrXV 774866 . A G 2750 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.83;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2783,324,0 chrXV 774965 . T C 2602 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.65;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2635,300,0 chrXV 775426 . T G 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.966;QD=20.38;ReadPosRankSum=1.599;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2173,249,0 chrXV 775432 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.36;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2169,249,0 chrXV 775484 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.47;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1944,216,0 chrXV 775735 . T A 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.766;QD=24.76;ReadPosRankSum=1.709;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3639,399,0 chrXV 776223 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.50;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2430,270,0 chrXV 776725 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7885;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.28;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3655,396,0 chrXV 776874 . C T 3772.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.31;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3772,417,0 chrXV 776881 . C A 3538.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.10;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3538,405,0 chrXV 776883 . C G 3348.01 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=19.58;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3348,384,0 chrXV 776943 . A C 3659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.734;DP=188;Dels=0.00;FS=10.373;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.473;QD=19.46;ReadPosRankSum=2.962;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:3,182:188:99:3659,411,0 chrXV 776993 . C T 6317.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.57;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6317,690,0 chrXV 777123 . G A 4506.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.67;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4506,498,0 chrXV 777138 . G A 4845.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=20.79;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4845,537,0 chrXV 777197 . T C 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=261;Dels=0.00;FS=3.543;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=1.546;QD=16.71;ReadPosRankSum=1.719;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:1,259:261:99:4361,492,0 chrXV 777201 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=17.11;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:4414,492,0 chrXV 777225 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.1584;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=17.35;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4268,471,0 chrXV 777268 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=222;Dels=0.00;FS=6.047;HaplotypeScore=13.1311;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.750;QD=17.09;ReadPosRankSum=2.968;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:3795,432,0 chrXV 777290 . G C 4659.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.43;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4659,528,0 chrXV 777461 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.9217;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.39;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4568,492,0 chrXV 777483 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.51;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3785,420,0 chrXV 777500 . A C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.01;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3602,408,0 chrXV 777648 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.20;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3686,399,0 chrXV 777689 . G C 3077 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.51;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3110,354,0 chrXV 778005 . T C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.296;QD=18.21;ReadPosRankSum=1.701;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2073,237,0 chrXV 778022 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=2.981;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.210;QD=15.67;ReadPosRankSum=2.410;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:1960,225,0 chrXV 778024 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.12;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2048,225,0 chrXV 778545 . T C 818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.559;QD=18.59;ReadPosRankSum=2.840;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:3,41:44:99:851,99,0 chrXV 778621 . T C 2151 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.734;QD=24.17;ReadPosRankSum=2.367;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:2184,249,0 chrXV 779060 . A G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.417;QD=20.52;ReadPosRankSum=1.580;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2844,336,0 chrXV 779309 . G C 2485 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.61;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2518,288,0 chrXV 779467 . C G 3175 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.3727;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.05;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3208,366,0 chrXV 779740 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=18.10;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3002,339,0 chrXV 779744 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=19.39;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2941,321,0 chrXV 779773 . T C 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=14.959;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-1.518;QD=16.38;ReadPosRankSum=2.412;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2195,249,0 chrXV 779788 . T A 1902 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=15.98;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1935,219,0 chrXV 779821 . A T 687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.863;DP=61;Dels=0.00;FS=1.848;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=-2.482;QD=11.26;ReadPosRankSum=3.960;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:6,55:61:81:720,81,0 chrXV 779822 . T C 659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=8.808;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=-0.369;QD=11.56;ReadPosRankSum=2.320;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:81:692,81,0 chrXV 779921 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=24.20;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1703,189,0 chrXV 780017 . G A 1479 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=23.11;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1512,162,0 chrXV 780071 . T G 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=84;Dels=0.00;FS=5.757;HaplotypeScore=1.9336;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.159;QD=19.02;ReadPosRankSum=2.769;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:3,80:84:99:1631,189,0 chrXV 780072 . C A 1679 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.9336;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.23;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1712,186,0 chrXV 780180 . T C 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=79;Dels=0.00;FS=6.314;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-1.152;QD=20.66;ReadPosRankSum=2.385;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,74:79:99:1665,186,0 chrXV 780184 . A C 1619 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.24;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1652,189,0 chrXV 780221 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.29;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1499,162,0 chrXV 780235 . T A 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=3.550;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.372;QD=17.97;ReadPosRankSum=1.597;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1417,159,0 chrXV 780477 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.10;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2756,303,0 chrXV 780631 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2775,300,0 chrXV 780750 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.534;HaplotypeScore=9.7836;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.197;QD=21.07;ReadPosRankSum=1.712;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3709,441,0 chrXV 780823 . G T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.31;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3949,444,0 chrXV 781222 . T C 3119 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.96;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3152,363,0 chrXV 781633 . T C 2951 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.36;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2984,339,0 chrXV 781811 . G C 4500.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.20;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4500,513,0 chrXV 781897 . C A 2874 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.82;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2907,336,0 chrXV 781936 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=178;Dels=0.00;FS=9.867;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.328;QD=16.81;ReadPosRankSum=2.904;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3025,348,0 chrXV 781943 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=17.58;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3180,348,0 chrXV 782167 . G T 4000.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6253;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.10;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4000,453,0 chrXV 782242 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.98;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3440,390,0 chrXV 782356 . A C 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=2.800;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.946;QD=21.78;ReadPosRankSum=2.414;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3060,351,0 chrXV 782474 . G C 3922.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.21;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3922,441,0 chrXV 782527 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6528;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.70;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4001,450,0 chrXV 782578 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.74;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2422,279,0 chrXV 782587 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.38;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2356,261,0 chrXV 782800 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.42;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2961,318,0 chrXV 783022 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.96;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3733,417,0 chrXV 783046 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=3.834;HaplotypeScore=8.5159;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.589;QD=20.61;ReadPosRankSum=1.696;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3958,456,0 chrXV 783313 . A T 356 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=15.48;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:45:389,45,0 chrXV 783414 . T G 1002 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=25.05;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1035,117,0 chrXV 783501 . T A 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.069;QD=21.18;ReadPosRankSum=1.663;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1092,126,0 chrXV 783522 . C G 1339 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.25;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1372,159,0 chrXV 783587 . G A 1399 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=15.72;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1432,162,0 chrXV 783594 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.13;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1626,189,0 chrXV 783669 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.849;QD=17.56;ReadPosRankSum=2.954;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:3,150:154:99:2738,318,0 chrXV 783674 . T C 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.576;QD=18.21;ReadPosRankSum=2.956;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:3,156:159:99:2929,330,0 chrXV 784086 . A T 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.272;QD=21.02;ReadPosRankSum=2.396;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1967,225,0 chrXV 784606 . A G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.332;QD=22.27;ReadPosRankSum=1.705;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2973,339,0 chrXV 784642 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.96;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2980,321,0 chrXV 784813 . C G 3149 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.50;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3182,369,0 chrXV 785050 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3348,384,0 chrXV 785154 . T G 3639.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.92;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3639,411,0 chrXV 785203 . A C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=3.042;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.872;QD=23.37;ReadPosRankSum=1.707;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3258,363,0 chrXV 785252 . A G 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.680;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.028;QD=24.09;ReadPosRankSum=1.713;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4385,492,0 chrXV 785407 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3039,327,0 chrXV 785674 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.767;QD=20.74;ReadPosRankSum=1.622;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3318,378,0 chrXV 785820 . T A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.4904;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.05;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4476,501,0 chrXV 785982 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.25;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2753,315,0 chrXV 786198 . T C 2324 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.39;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2357,270,0 chrXV 786207 . G A 2399 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.83;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2432,270,0 chrXV 786510 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=156;Dels=0.00;FS=17.015;HaplotypeScore=13.7538;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.529;QD=20.30;ReadPosRankSum=2.839;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3200,378,0 chrXV 786645 . A G 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=3.303;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.318;QD=23.61;ReadPosRankSum=1.619;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2229,252,0 chrXV 786708 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.07;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2409,264,0 chrXV 786736 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.32;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2577,282,0 chrXV 786840 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.81;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2542,285,0 chrXV 786986 . T A 2539 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.08;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2572,291,0 chrXV 787002 . A T 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=123;Dels=0.00;FS=6.128;HaplotypeScore=91.6285;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.170;QD=18.20;ReadPosRankSum=2.370;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2272,261,0 chrXV 787105 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.80;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3451,405,0 chrXV 787507 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3022,327,0 chrXV 787600 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2765,315,0 chrXV 787943 . C T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.2625;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.51;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3897,426,0 chrXV 788055 . T C 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.713;QD=23.71;ReadPosRankSum=1.657;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4410,507,0 chrXV 788235 . T C 5112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=233;Dels=0.00;FS=2.951;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.100;QD=21.94;ReadPosRankSum=2.428;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5112,597,0 chrXV 788275 . C T 5649.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.14;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5649,618,0 chrXV 788305 . G A 5804.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=8.1600;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.58;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5804,660,0 chrXV 789501 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.21;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3807,432,0 chrXV 789595 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.185;QD=22.60;ReadPosRankSum=1.696;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2180,249,0 chrXV 789620 . T C 2161 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.61;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2194,255,0 chrXV 789672 . A G 2353 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.82;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2386,273,0 chrXV 789673 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.75;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2521,276,0 chrXV 789868 . T A 1938 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.28;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1971,222,0 chrXV 789979 . T A 2767 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2800,306,0 chrXV 790068 . C A 2067 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2100,228,0 chrXV 790259 . A G 3657.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.4639;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.86;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3657,426,0 chrXV 790298 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.07;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3415,378,0 chrXV 790538 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.70;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2811,312,0 chrXV 790680 . A C 4360.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.95;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4360,498,0 chrXV 790997 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.87;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3545,411,0 chrXV 791058 . G C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3547,402,0 chrXV 791498 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.41;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3631,423,0 chrXV 791600 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.676;QD=21.70;ReadPosRankSum=1.699;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,104:108:99:2377,267,0 chrXV 791981 . T C 4496.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.54;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4496,507,0 chrXV 792226 . C T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.5688;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.76;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4193,456,0 chrXV 792267 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.08;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3273,357,0 chrXV 792544 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2332,252,0 chrXV 793037 . A G 2645 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2678,300,0 chrXV 794018 . A C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=3.051;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.408;QD=22.60;ReadPosRankSum=1.667;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2496,288,0 chrXV 794298 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3645;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.78;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3281,366,0 chrXV 794598 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9084;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.57;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3636,408,0 chrXV 794654 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.87;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3507,387,0 chrXV 794817 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.96;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2862,321,0 chrXV 794866 . T A 2595 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.10;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2628,288,0 chrXV 795030 . A G 2477 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2510,288,0 chrXV 795362 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3757,423,0 chrXV 795596 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=22.39;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2429,267,0 chrXV 795711 . A G 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.8866;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.725;QD=21.82;ReadPosRankSum=1.708;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3131,363,0 chrXV 796275 . C T 6270.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.70;SB=-3.745e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:6270,699,0 chrXV 796340 . T G 4374.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=16.3563;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=16.89;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:4374,492,0 chrXV 796356 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=9.7018;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.48;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:4439,492,0 chrXV 796472 . C A 4258.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.57;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4258,459,0 chrXV 796494 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.18;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3812,423,0 chrXV 796590 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.38;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3913,426,0 chrXV 796725 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.70;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4232,468,0 chrXV 796993 . C A 2984 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=13.8175;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.44;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3017,345,0 chrXV 797036 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=130;Dels=0.00;FS=6.110;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.806;QD=19.62;ReadPosRankSum=2.931;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2584,291,0 chrXV 797043 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.61;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2582,294,0 chrXV 797205 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.38;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3007,327,0 chrXV 797362 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.78;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2407,264,0 chrXV 797370 . T C 2182 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.31;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2215,261,0 chrXV 797376 . T C 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=4.887;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.304;QD=19.73;ReadPosRankSum=1.702;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2282,255,0 chrXV 797569 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.24;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1881,210,0 chrXV 798032 . T C 8084.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=365;Dels=0.00;FS=5.245;HaplotypeScore=14.9943;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.723;QD=22.15;ReadPosRankSum=2.953;SB=-3.542e+03 GT:AD:DP:GQ:PL 1/1:3,362:365:99:8084,909,0 chrXV 798185 . A T 5725.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.82;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:5725,642,0 chrXV 798206 . A T 6031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=9.6131;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.809;QD=19.84;ReadPosRankSum=1.686;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:6031,660,0 chrXV 798886 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.2968;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.97;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3094,342,0 chrXV 798916 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.02;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2698,303,0 chrXV 799064 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.53;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2552,285,0 chrXV 799117 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.45;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2659,288,0 chrXV 799260 . T A 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4569;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.205;QD=23.92;ReadPosRankSum=1.619;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2234,255,0 chrXV 799553 . C A 2559 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.45;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2592,294,0 chrXV 800155 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2217,246,0 chrXV 800527 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.058;QD=23.09;ReadPosRankSum=1.662;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3441,393,0 chrXV 800594 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3784,420,0 chrXV 800671 . A C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.99;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3358,378,0 chrXV 800724 . T C 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=5.101;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.450;QD=20.52;ReadPosRankSum=1.648;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2577,294,0 chrXV 800964 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=117;Dels=0.00;FS=2.748;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.768;QD=22.24;ReadPosRankSum=2.408;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2635,300,0 chrXV 801084 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.67;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2992,336,0 chrXV 801285 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.65;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2696,306,0 chrXV 801441 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=152;Dels=0.00;FS=4.518;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.386;QD=23.96;ReadPosRankSum=-0.485;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3642,402,0 chrXV 801555 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=135;Dels=0.00;FS=5.175;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.577;QD=21.97;ReadPosRankSum=1.706;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2999,348,0 chrXV 802374 . T C 1859 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1892,213,0 chrXV 802489 . T G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.558;QD=23.14;ReadPosRankSum=1.703;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2764,309,0 chrXV 802733 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7548;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.28;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3453,378,0 chrXV 802784 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.5841;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.72;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4460,492,0 chrXV 803471 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.6542;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.80;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3619,417,0 chrXV 803637 . C A 2739 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.74;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2772,315,0 chrXV 804529 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.303;QD=23.70;ReadPosRankSum=0.662;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4266,422,0 chrXV 804694 . C A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.25;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4160,459,0 chrXV 804884 . T C 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=101;Dels=0.00;FS=7.959;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=-0.624;QD=17.83;ReadPosRankSum=1.697;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1834,210,0 chrXV 805025 . C G 2151 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.87;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2184,249,0 chrXV 805027 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.78;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1935,222,0 chrXV 805104 . A G 1774 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.87;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1807,213,0 chrXV 805146 . A G 2153 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.31;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2186,255,0 chrXV 805185 . A C 2192 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.75;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2225,264,0 chrXV 805851 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=161;Dels=0.00;FS=9.202;HaplotypeScore=10.6897;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-2.013;QD=21.27;ReadPosRankSum=3.324;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:4,152:161:99:3424,402,0 chrXV 805899 . C A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.13;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3839,438,0 chrXV 806960 . G T 3190 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.63;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3223,360,0 chrXV 807123 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.40;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3093,354,0 chrXV 807285 . T G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.352;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.597;QD=19.15;ReadPosRankSum=1.703;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2369,276,0 chrXV 807291 . G C 2449 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=19.13;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2482,285,0 chrXV 807337 . T C 2859 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.45;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2892,339,0 chrXV 807468 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.95;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2907,327,0 chrXV 807631 . A C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=109;Dels=0.00;FS=6.481;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.633;QD=22.79;ReadPosRankSum=2.243;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:2,105:109:99:2517,291,0 chrXV 807840 . T A 2510 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.61;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2543,276,0 chrXV 807946 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=1.9497;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=18.78;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1798,195,0 chrXV 807953 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=18.10;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1662,183,0 chrXV 807980 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.22;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1497,168,0 chrXV 808141 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;QD=15.81;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1298,141,0 chrXV 808281 . T C 2472 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.27;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2505,282,0 chrXV 808677 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2940,324,0 chrXV 808993 . G C 2565 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2598,297,0 chrXV 809274 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3177,348,0 chrXV 809627 . G A 4668.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.70;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4668,507,0 chrXV 809657 . C T 4441.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.37;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4441,510,0 chrXV 809961 . A G 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.175;QD=21.67;ReadPosRankSum=1.652;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2850,336,0 chrXV 810088 . T G 4079.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.28;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4079,462,0 chrXV 810364 . G T 2990 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.15;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3023,333,0 chrXV 810411 . T C 2994 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3027,342,0 chrXV 810751 . A T 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.353;QD=19.86;ReadPosRankSum=1.640;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2277,264,0 chrXV 810765 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.241;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.045;QD=20.54;ReadPosRankSum=1.643;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2436,288,0 chrXV 811006 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.34;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3432,372,0 chrXV 811067 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2552,279,0 chrXV 811738 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.67;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3333,369,0 chrXV 812380 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.93;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2546,285,0 chrXV 812662 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.24;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3267,357,0 chrXV 812674 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.09;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3551,387,0 chrXV 812728 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.15;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3667,408,0 chrXV 813043 . A G 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.395;QD=19.38;ReadPosRankSum=2.406;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2223,255,0 chrXV 813776 . T A 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=123;Dels=0.00;FS=7.697;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.130;QD=19.04;ReadPosRankSum=2.390;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2375,267,0 chrXV 813794 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3537;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.73;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2262,255,0 chrXV 814261 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.3054;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.80;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3423,375,0 chrXV 814381 . A C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3326,369,0 chrXV 814706 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.843;QD=22.35;ReadPosRankSum=1.664;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3420,393,0 chrXV 814826 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.8425;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.35;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3642,408,0 chrXV 815222 . A G 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=147;Dels=0.00;FS=3.582;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.214;QD=20.92;ReadPosRankSum=1.708;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3108,363,0 chrXV 815249 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.10;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2882,312,0 chrXV 815267 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.2816;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.98;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3150,354,0 chrXV 815746 . T C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=4.372;HaplotypeScore=8.7093;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.666;QD=21.92;ReadPosRankSum=1.699;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2335,264,0 chrXV 815934 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.12;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1577,174,0 chrXV 816109 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.69;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1999,222,0 chrXV 816176 . A G 2065 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.47;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2098,249,0 chrXV 816215 . C G 2327 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.74;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2360,279,0 chrXV 816326 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.34;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3396,387,0 chrXV 816467 . A T 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=6.927;HaplotypeScore=8.1092;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.307;QD=23.04;ReadPosRankSum=2.356;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3618,399,0 chrXV 816593 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.375;QD=20.24;ReadPosRankSum=1.662;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3028,357,0 chrXV 816611 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=3.020;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.641;QD=19.37;ReadPosRankSum=2.417;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:2997,348,0 chrXV 816620 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.20;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2990,336,0 chrXV 816745 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.973;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.225;QD=23.44;ReadPosRankSum=1.665;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3633,411,0 chrXV 816857 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.72;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3747,414,0 chrXV 816972 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.71;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3725,411,0 chrXV 816997 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.63;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4064,447,0 chrXV 817513 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4147,471,0 chrXV 818089 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.25;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3999,447,0 chrXV 818119 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.83;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4155,450,0 chrXV 818999 . A C 3613.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.46;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3613,417,0 chrXV 819178 . G C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3339;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3509,414,0 chrXV 819228 . G C 3483.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.50;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3483,408,0 chrXV 819300 . T C 2712 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.10;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2745,312,0 chrXV 819302 . T C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.393;QD=18.18;ReadPosRankSum=1.635;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2651,306,0 chrXV 819348 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.28;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2538,279,0 chrXV 819414 . G C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.77;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3848,435,0 chrXV 819520 . G A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.86;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4367,489,0 chrXV 819625 . C T 4686.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.9746;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.08;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4686,519,0 chrXV 820001 . T C 2831 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1781;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.45;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2864,330,0 chrXV 820227 . C G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.48;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3593,405,0 chrXV 820504 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=153;Dels=0.00;FS=10.075;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.059;QD=21.96;ReadPosRankSum=2.417;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3360,381,0 chrXV 820842 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.54;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1205,138,0 chrXV 820854 . C G 1374 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.11;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1407,159,0 chrXV 820906 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.65;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1520,174,0 chrXV 821660 . T C 4502.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.45;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4502,516,0 chrXV 821737 . T A 3125 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.41;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3158,342,0 chrXV 822154 . T C 2527 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.40;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2560,288,0 chrXV 822183 . T C 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=117;Dels=0.00;FS=8.533;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.399;QD=21.75;ReadPosRankSum=2.407;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,112:117:99:2578,300,0 chrXV 823421 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=125;Dels=0.00;FS=5.157;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.213;QD=21.99;ReadPosRankSum=3.177;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:4,121:125:99:2782,318,0 chrXV 823625 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.58;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2584,288,0 chrXV 823983 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.311;QD=21.50;ReadPosRankSum=1.658;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3065,351,0 chrXV 824604 . T C 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.036;DP=119;Dels=0.00;FS=2.857;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.333;QD=20.75;ReadPosRankSum=2.408;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2502,285,0 chrXV 824636 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.82;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3355,393,0 chrXV 824928 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.91;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1742,195,0 chrXV 825148 . A G 2394 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2427,279,0 chrXV 825198 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.00;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3115,360,0 chrXV 825258 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.091;QD=24.22;ReadPosRankSum=1.706;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3255,369,0 chrXV 825345 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=5.075;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.304;QD=24.36;ReadPosRankSum=1.709;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3629,408,0 chrXV 826024 . C T 2302 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1771;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.02;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2335,273,0 chrXV 826031 . T C 2106 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=117;Dels=0.00;FS=2.077;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.682;QD=18.00;ReadPosRankSum=3.292;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2139,238,0 chrXV 826034 . C T 2313 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.12;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2346,258,0 chrXV 826120 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.49;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3509,411,0 chrXV 826154 . C G 4391.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.29;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4391,516,0 chrXV 826212 . A T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.1139;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.09;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3926,435,0 chrXV 826624 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=160;Dels=0.00;FS=6.565;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.291;QD=20.03;ReadPosRankSum=2.403;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,155:160:99:3238,372,0 chrXV 826642 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.96;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3186,354,0 chrXV 826798 . T C 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=3.364;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.162;QD=20.47;ReadPosRankSum=1.678;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2673,315,0 chrXV 826879 . C G 3844.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.75;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3844,444,0 chrXV 827016 . A T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.4909;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.91;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3390,369,0 chrXV 827048 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.011;QD=20.73;ReadPosRankSum=1.686;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3142,354,0 chrXV 827194 . A T 4964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=207;Dels=0.00;FS=4.022;HaplotypeScore=8.3330;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.063;QD=23.98;ReadPosRankSum=1.715;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4964,552,0 chrXV 827239 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8472;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.45;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3861,432,0 chrXV 827251 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5602;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.33;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4020,447,0 chrXV 827284 . T A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.85;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3545,402,0 chrXV 827824 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.0742;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.83;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2937,333,0 chrXV 828031 . T G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.622;QD=21.87;ReadPosRankSum=1.665;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3456,399,0 chrXV 828050 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.66;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3942,447,0 chrXV 828088 . G A 4341.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=17.3991;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.92;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4341,483,0 chrXV 828529 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.725;QD=20.96;ReadPosRankSum=1.697;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:1,196:200:99:4192,480,0 chrXV 828571 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.1518;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.89;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4032,456,0 chrXV 828592 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=196;Dels=0.00;FS=6.314;HaplotypeScore=7.4372;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.294;QD=21.07;ReadPosRankSum=2.399;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4130,465,0 chrXV 829039 . A G 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=150;Dels=0.00;FS=8.300;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.172;QD=23.77;ReadPosRankSum=2.319;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3565,408,0 chrXV 829111 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=151;Dels=0.00;FS=4.144;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=21.98;ReadPosRankSum=1.709;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3319,378,0 chrXV 829444 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3576,414,0 chrXV 829911 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1336;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.75;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3165,357,0 chrXV 830506 . T C 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=106;Dels=0.00;FS=4.232;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.667;QD=19.07;ReadPosRankSum=1.667;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2054,231,0 chrXV 830744 . T A 1755 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.04;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1788,201,0 chrXV 830783 . C A 1254 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.25;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1287,141,0 chrXV 830785 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.17;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1203,138,0 chrXV 830857 . T C 610 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=15.25;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:72:643,72,0 chrXV 830894 . C A 648 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=14.40;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:75:681,75,0 chrXV 831051 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1384,153,0 chrXV 831592 . C T 7334.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=10.2994;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.06;SB=-3.684e+03 GT:AD:DP:GQ:PL 1/1:0,318:318:99:7334,837,0 chrXV 832096 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.55;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3427,372,0 chrXV 832169 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.33;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3182,348,0 chrXV 832222 . G T 2430 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.32;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2463,273,0 chrXV 832326 . G A 4425.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=25.29;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4425,483,0 chrXV 832546 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.63;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3156,342,0 chrXV 832576 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.52;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2615,291,0 chrXV 832589 . C G 2268 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=19.89;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2301,264,0 chrXV 832602 . C G 2028 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.61;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2061,234,0 chrXV 832664 . T A 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=85;Dels=0.00;FS=3.013;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.000;QD=20.25;ReadPosRankSum=2.363;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1754,195,0 chrXV 832805 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7574;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.55;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4050,456,0 chrXV 832871 . T C 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=2.725;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.146;QD=21.69;ReadPosRankSum=2.381;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3135,360,0 chrXV 832893 . A C 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=148;Dels=0.00;FS=6.861;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.192;QD=19.03;ReadPosRankSum=2.299;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2850,327,0 chrXV 833083 . A G 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=202;Dels=0.00;FS=7.652;HaplotypeScore=14.1436;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-2.279;QD=22.16;ReadPosRankSum=2.401;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4477,513,0 chrXV 833356 . C A 4967.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.77;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4967,543,0 chrXV 833472 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.656;QD=19.42;ReadPosRankSum=1.713;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3593,414,0 chrXV 833904 . C T 6030.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.77;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6030,687,0 chrXV 834197 . A G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.626;QD=21.71;ReadPosRankSum=1.703;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2617,291,0 chrXV 834401 . C A 2041 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.19;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2074,231,0 chrXV 834436 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.12;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2900,321,0 chrXV 834472 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.884;QD=24.17;ReadPosRankSum=1.417;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3456,384,0 chrXV 834731 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=216;Dels=0.00;FS=3.009;HaplotypeScore=7.9987;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.166;QD=17.44;ReadPosRankSum=2.358;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:3766,435,0 chrXV 834738 . C T 3971.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.97;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:3971,435,0 chrXV 834976 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.8651;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.80;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3511,402,0 chrXV 835187 . T C 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.4328;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.177;QD=22.14;ReadPosRankSum=1.679;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2933,339,0 chrXV 835445 . T G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=4.743;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.391;QD=23.81;ReadPosRankSum=1.710;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3715,417,0 chrXV 835656 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=166;Dels=0.00;FS=5.427;HaplotypeScore=10.2320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.127;QD=23.20;ReadPosRankSum=1.648;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3851,435,0 chrXV 836062 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.28;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3257,381,0 chrXV 836272 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.14;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3369,375,0 chrXV 836300 . T C 3227.04 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.2113;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.87;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3260,378,0 chrXV 836404 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7045;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.55;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3461,393,0 chrXV 836419 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.170;QD=19.01;ReadPosRankSum=1.692;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3289,369,0 chrXV 836747 . A C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.20;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3457,396,0 chrXV 837056 . A G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6316;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.782;QD=20.30;ReadPosRankSum=1.676;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2570,297,0 chrXV 837126 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.94;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2688,297,0 chrXV 837247 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.56;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2500,273,0 chrXV 837630 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.97;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2505,273,0 chrXV 837673 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.69;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1667,189,0 chrXV 837685 . A G 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=6.871;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.263;QD=20.06;ReadPosRankSum=2.328;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1678,192,0 chrXV 838080 . A C 3635.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0233;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.77;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3635,423,0 chrXV 838118 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=160;Dels=0.00;FS=5.899;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.793;QD=21.29;ReadPosRankSum=2.918;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3407,384,0 chrXV 838315 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.74;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3774,408,0 chrXV 838372 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.24;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3080,348,0 chrXV 838573 . C T 5366.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.96;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5366,609,0 chrXV 838603 . C T 6143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.569;QD=24.09;ReadPosRankSum=0.808;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:6143,696,0 chrXV 839012 . A G 2619 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.97;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2652,300,0 chrXV 839332 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2164,237,0 chrXV 839433 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.00;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1773,192,0 chrXV 839444 . G T 1754 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.27;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1787,198,0 chrXV 839707 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.33;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2780,309,0 chrXV 839744 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.18;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3185,357,0 chrXV 839828 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=149;Dels=0.00;FS=3.442;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.632;QD=22.17;ReadPosRankSum=1.709;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3303,378,0 chrXV 839885 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.70;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4224,459,0 chrXV 839947 . A T 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=192;Dels=0.00;FS=8.318;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.477;QD=22.70;ReadPosRankSum=2.386;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4359,489,0 chrXV 840149 . C T 4895.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.53;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4895,546,0 chrXV 840176 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.36;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4070,462,0 chrXV 840302 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7312;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.58;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3841,441,0 chrXV 840426 . T C 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=129;Dels=0.00;FS=8.147;HaplotypeScore=10.5147;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.642;QD=22.33;ReadPosRankSum=3.320;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2914,336,0 chrXV 840781 . T A 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.398;QD=23.14;ReadPosRankSum=1.619;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2856,315,0 chrXV 840860 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.75;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2399,273,0 chrXV 840872 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.40;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2522,276,0 chrXV 840945 . T G 3413.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.22;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3413,390,0 chrXV 841378 . T G 4686.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.5885;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.67;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4686,540,0 chrXV 841912 . G T 2297 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2330,264,0 chrXV 843188 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.441;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.752;QD=22.53;ReadPosRankSum=1.667;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3583,417,0 chrXV 843195 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=2.933;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.625;QD=22.11;ReadPosRankSum=2.389;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3560,408,0 chrXV 843305 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.533;QD=22.18;ReadPosRankSum=1.710;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3505,402,0 chrXV 843356 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.27;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3273,366,0 chrXV 843367 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=140;Dels=0.00;FS=2.990;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.458;QD=21.02;ReadPosRankSum=2.414;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,135:140:99:2976,342,0 chrXV 843686 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.482;QD=20.40;ReadPosRankSum=1.638;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2297,258,0 chrXV 843713 . C G 2245 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=18.55;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,114:121:99:2278,270,0 chrXV 843866 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.8819;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.37;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4020,435,0 chrXV 843892 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.12;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3696,420,0 chrXV 843925 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.32;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3343,366,0 chrXV 845688 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.78;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3377,387,0 chrXV 845796 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.06;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3529,399,0 chrXV 845838 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.83;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3402,369,0 chrXV 845840 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.52;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3292,363,0 chrXV 846014 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.71;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3406,381,0 chrXV 846027 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.07;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3333,369,0 chrXV 846635 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=160;Dels=0.00;FS=5.408;HaplotypeScore=10.6376;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.453;QD=21.89;ReadPosRankSum=2.931;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3502,402,0 chrXV 846762 . G T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.55;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3791,417,0 chrXV 846878 . T C 4510.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.5767;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.44;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4510,510,0 chrXV 847382 . A C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.46;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3278,369,0 chrXV 847716 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.01;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4141,471,0 chrXV 848376 . C G 2767 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.93;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2800,312,0 chrXV 848406 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=23.51;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2643,306,0 chrXV 848537 . A G 2830 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.81;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2863,333,0 chrXV 848614 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=20.63;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3252,360,0 chrXV 848635 . G C 3199 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=19.04;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3232,366,0 chrXV 848657 . A G 3162 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.38;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3195,360,0 chrXV 848683 . A G 2277 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=15.70;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2310,267,0 chrXV 848684 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=16.46;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2420,264,0 chrXV 848740 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=17.7512;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=17.03;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2468,276,0 chrXV 848780 . G C 2531 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.82;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2564,291,0 chrXV 848781 . A T 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=3.027;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.147;QD=18.45;ReadPosRankSum=2.380;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2653,291,0 chrXV 848800 . T C 2821 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.08;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2854,318,0 chrXV 849032 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.51;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3511,393,0 chrXV 849274 . T C 3115 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=6.3101;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.77;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3148,363,0 chrXV 849335 . C A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=0.18;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,7:99:6:49,6,0 chrXV 849390 . A G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.03;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-1.022;QD=18.37;ReadPosRankSum=1.614;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2238,252,0 chrXV 849394 . C T 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=120;Dels=0.00;FS=2.596;HaplotypeScore=21.1060;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-1.109;QD=18.02;ReadPosRankSum=2.942;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2195,252,0 chrXV 849514 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.8292;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=23.52;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3833,414,0 chrXV 849531 . A G 828.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.912;DP=162;Dels=0.00;FS=41.242;HaplotypeScore=7.6178;MLEAC=1;MLEAF=0.500;MQ=49.74;MQ0=0;MQRankSum=-0.310;QD=5.11;ReadPosRankSum=-0.616;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:102,60:162:99:858,0,1846 chrXV 849538 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=22.20;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3508,387,0 chrXV 849584 . G A 1638.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.803;DP=170;Dels=0.00;FS=3.574;HaplotypeScore=16.4761;MLEAC=1;MLEAF=0.500;MQ=43.24;MQ0=0;MQRankSum=3.184;QD=9.64;ReadPosRankSum=0.489;SB=-9.070e+02 GT:AD:DP:GQ:PL 0/1:79,89:170:99:1668,0,1141 chrXV 849621 . G A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=23.99;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4654,507,0 chrXV 849652 . G C 2134.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;DP=223;Dels=0.00;FS=7.835;HaplotypeScore=17.9613;MLEAC=1;MLEAF=0.500;MQ=47.94;MQ0=0;MQRankSum=-0.134;QD=9.57;ReadPosRankSum=0.701;SB=-9.740e+02 GT:AD:DP:GQ:PL 0/1:108,115:223:99:2164,0,1936 chrXV 849787 . G A 2506.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.769;DP=283;Dels=0.00;FS=0.939;HaplotypeScore=16.1985;MLEAC=1;MLEAF=0.500;MQ=52.64;MQ0=0;MQRankSum=-0.515;QD=8.86;ReadPosRankSum=-1.657;SB=-1.065e+03 GT:AD:DP:GQ:PL 0/1:138,144:283:99:2536,0,2486 chrXV 849838 . C T 2011.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.233;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=10.0643;MLEAC=1;MLEAF=0.500;MQ=45.74;MQ0=0;MQRankSum=-6.106;QD=7.26;ReadPosRankSum=0.823;SB=-1.431e+03 GT:AD:DP:GQ:PL 0/1:133,144:277:99:2041,0,2024 chrXV 849841 . T C 5042.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=283;Dels=0.00;FS=6.007;HaplotypeScore=18.6254;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;MQRankSum=0.320;QD=17.82;ReadPosRankSum=2.917;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:3,276:282:99:5042,585,0 chrXV 849847 . A G 4831.01 SnpCluster AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=17.38;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:4831,558,0 chrXV 849860 . C T 4801.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=16.73;SB=-3.722e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:4801,528,0 chrXV 849861 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=16.32;SB=-3.690e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:4734,522,0 chrXV 850123 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.201;DP=177;Dels=0.00;FS=5.254;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=2.278;QD=19.41;ReadPosRankSum=3.410;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:4,172:177:99:3435,402,0 chrXV 850266 . G C 2915 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.28;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2948,339,0 chrXV 850405 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.27;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3490,384,0 chrXV 850837 . G T 2469 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.10;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2502,270,0 chrXV 850845 . A T 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.124;QD=20.70;ReadPosRankSum=1.671;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2393,258,0 chrXV 851249 . T A 2993 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.38;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3026,345,0 chrXV 851261 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.63;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3201,345,0 chrXV 851373 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3905,450,0 chrXV 852451 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.73;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2692,309,0 chrXV 852538 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.50;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3332,375,0 chrXV 852621 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.600;QD=21.30;ReadPosRankSum=1.666;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3366,384,0 chrXV 852634 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.966;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.877;QD=20.56;ReadPosRankSum=1.497;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3330,372,0 chrXV 852640 . A G 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=3.925;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.592;QD=19.56;ReadPosRankSum=1.688;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3163,366,0 chrXV 852729 . G A 4628.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.5087;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.26;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4628,504,0 chrXV 854117 . T G 2807 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=24.62;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2840,327,0 chrXV 854178 . C T 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=5.749;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;MQRankSum=-1.704;QD=24.44;ReadPosRankSum=-1.313;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3064,336,0 chrXV 854363 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.39;MQ0=4;QD=1.78;SB=-2.880e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:49,6,0 chrXV 854509 . T A 180.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.003;DP=15;Dels=0.00;FS=17.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=4;MQRankSum=2.003;QD=12.00;ReadPosRankSum=-2.003;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,9:15:24:213,24,0 chrXV 854531 . T C 258 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=16;Dels=0.00;FS=18.921;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=3;MQRankSum=2.073;QD=16.13;ReadPosRankSum=1.086;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,11:16:33:291,33,0 chrXV 854544 . G A 260 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=14;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=2;MQRankSum=1.448;QD=18.57;ReadPosRankSum=1.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,11:14:33:293,33,0 chrXV 854584 . A C 184.03 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=23.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:217,24,0 chrXV 854637 . G A 594 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=11.88;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:69:627,69,0 chrXV 854679 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=21.02;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1904,210,0 chrXV 854799 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=19.25;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1034,117,0 chrXV 854873 . A G 695 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=20.44;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:84:728,84,0 chrXV 854892 . A G 742 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.53;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:90:775,90,0 chrXV 854955 . T C 389 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.52;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:422,48,0 chrXV 854995 . A T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrXV 855177 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.6697;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.10;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3514,390,0 chrXV 855289 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.77;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3643,396,0 chrXV 855309 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.29;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3923,426,0 chrXV 855498 . G A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.95;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4096,447,0 chrXV 856254 . G A 6026.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=13.2835;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.83;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:6026,681,0 chrXV 856758 . A C 2372 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2405,273,0 chrXV 857553 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4552;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.63;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3326,366,0 chrXV 857886 . T C 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.665;QD=21.91;ReadPosRankSum=1.672;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3813,438,0 chrXV 857961 . G A 4690.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.6524;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.22;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4690,513,0 chrXV 859039 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=179;Dels=0.00;FS=9.059;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.476;QD=21.84;ReadPosRankSum=3.361;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:4,174:179:99:3910,450,0 chrXV 859217 . C T 4401.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4401,486,0 chrXV 859587 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.345;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.7528;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.111;QD=23.32;ReadPosRankSum=-1.658;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4407,464,0 chrXV 859763 . A G 5076.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.80;SB=-3.056e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5076,573,0 chrXV 859857 . T C 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-1.570;QD=18.39;ReadPosRankSum=1.696;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3549,414,0 chrXV 859862 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.75;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3749,405,0 chrXV 859965 . C G 5218.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.0675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5218,594,0 chrXV 860263 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.0449;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.11;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4002,435,0 chrXV 860275 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.006;DP=187;Dels=0.00;FS=14.309;HaplotypeScore=4.3908;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.115;QD=17.18;ReadPosRankSum=4.059;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:6,181:187:99:3246,369,0 chrXV 860337 . T A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8651;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.17;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3642,402,0 chrXV 860391 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=156;Dels=0.00;FS=8.888;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.570;QD=22.83;ReadPosRankSum=3.346;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:4,151:156:99:3562,405,0 chrXV 861174 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=104;Dels=0.00;FS=4.446;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.656;QD=20.48;ReadPosRankSum=1.698;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2163,249,0 chrXV 861195 . C T 2191 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.67;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2224,246,0 chrXV 861567 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.4883;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.34;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2915,321,0 chrXV 861653 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.090;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.094;QD=21.26;ReadPosRankSum=1.669;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2393,270,0 chrXV 862224 . A T 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.991;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.811;QD=24.65;ReadPosRankSum=1.695;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4634,507,0 chrXV 862860 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.96;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4409,513,0 chrXV 863813 . G A 2195 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.63;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2228,249,0 chrXV 863844 . T C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=106;Dels=0.00;FS=6.070;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.076;QD=21.40;ReadPosRankSum=2.915;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2301,267,0 chrXV 864477 . A C 4887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=3.108;HaplotypeScore=6.4506;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-1.332;QD=21.43;ReadPosRankSum=1.717;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:1,224:228:99:4887,558,0 chrXV 864480 . T C 4880.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.8335;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.69;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4880,558,0 chrXV 864723 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=21.8003;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.70;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4740,522,0 chrXV 865407 . T A 2561 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.0654;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.46;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2594,297,0 chrXV 866653 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.142;QD=21.24;ReadPosRankSum=1.706;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2901,327,0 chrXV 866689 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=175;Dels=0.00;FS=7.293;HaplotypeScore=13.9378;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.249;QD=22.10;ReadPosRankSum=2.421;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:3868,441,0 chrXV 866753 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3586,408,0 chrXV 866817 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.51;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2948,321,0 chrXV 866840 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=5.850;HaplotypeScore=10.4694;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.924;QD=22.35;ReadPosRankSum=1.663;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3353,381,0 chrXV 866964 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=21.0312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4138,465,0 chrXV 867041 . G A 8007.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=9.4304;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.26;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:8007,868,0 chrXV 867169 . T G 4867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.842;QD=22.02;ReadPosRankSum=1.637;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:1,217:221:99:4867,558,0 chrXV 867347 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.46;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4177,462,0 chrXV 867358 . A G 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.401;QD=20.47;ReadPosRankSum=1.673;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3644,417,0 chrXV 867490 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.49;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3509,393,0 chrXV 867663 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=153;Dels=0.00;FS=2.862;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.104;QD=23.13;ReadPosRankSum=2.385;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3539,402,0 chrXV 868024 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.71;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1198,138,0 chrXV 868028 . T A 1236 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=14.21;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1269,138,0 chrXV 868038 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=14.29;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1333,147,0 chrXV 868053 . T C 1254 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=63.7091;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=13.63;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1287,144,0 chrXV 868056 . C G 1186 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=64.4227;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=13.18;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1219,138,0 chrXV 868096 . T C 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=80;Dels=0.00;FS=2.846;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;MQRankSum=-0.663;QD=15.31;ReadPosRankSum=1.957;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1258,144,0 chrXV 868474 . G A 5661.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.9436;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.51;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5661,616,0 chrXV 868576 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.3240;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.78;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4669,522,0 chrXV 868630 . T C 4982.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.24;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4982,576,0 chrXV 868708 . T C 5442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.662;DP=240;Dels=0.00;FS=19.899;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.049;QD=22.68;ReadPosRankSum=2.898;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:5,232:240:99:5442,627,0 chrXV 868909 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2425,267,0 chrXV 869099 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.49;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1651,183,0 chrXV 869133 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=16.16;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1714,189,0 chrXV 869134 . A C 1635 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=15.42;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1668,192,0 chrXV 869158 . A C 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=9.208;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;MQRankSum=-0.901;QD=10.76;ReadPosRankSum=1.697;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1109,129,0 chrXV 869174 . T C 655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;MQRankSum=-2.736;QD=6.97;ReadPosRankSum=3.361;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:4,89:94:78:688,78,0 chrXV 869184 . G A 772 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=8.21;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:90:805,90,0 chrXV 869187 . G C 784 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=8.34;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:93:817,93,0 chrXV 869333 . A C 4288.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=23.43;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4288,486,0 chrXV 869373 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=21.03;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,158:163:99:3428,378,0 chrXV 869392 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0698;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.98;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3824,429,0 chrXV 869435 . T C 5369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.2717;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.134;QD=23.14;ReadPosRankSum=1.672;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5369,615,0 chrXV 869482 . C T 5495.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.4876;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.00;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5495,630,0 chrXV 869837 . T C 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5804;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=0.100;QD=22.10;ReadPosRankSum=1.666;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2354,267,0 chrXV 870333 . G A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4730,537,0 chrXV 870449 . A G 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=182;Dels=0.00;FS=5.978;HaplotypeScore=12.9851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.817;QD=22.62;ReadPosRankSum=2.928;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4116,471,0 chrXV 871008 . C A 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.464;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.013;QD=23.11;ReadPosRankSum=0.780;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3061,333,0 chrXV 871386 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.20;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3885,444,0 chrXV 871698 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.620;QD=23.63;ReadPosRankSum=1.680;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3200,363,0 chrXV 871710 . G T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.67;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3355,363,0 chrXV 871812 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.69;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1767,198,0 chrXV 871819 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.45;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1823,201,0 chrXV 872508 . T C 4084.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4084,483,0 chrXV 872836 . A T 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.2142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.117;QD=24.17;ReadPosRankSum=1.676;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4496,492,0 chrXV 873788 . G A 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=128;Dels=0.00;FS=2.313;HaplotypeScore=4.4067;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-1.151;QD=17.29;ReadPosRankSum=2.675;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2246,249,0 chrXV 873789 . A G 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=126;Dels=0.01;FS=10.487;HaplotypeScore=5.9293;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-1.122;QD=17.00;ReadPosRankSum=2.927;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2175,252,0 chrXV 873823 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.802;HaplotypeScore=5.1657;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.283;QD=19.79;ReadPosRankSum=1.700;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2170,249,0 chrXV 873866 . T C 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.534;QD=21.35;ReadPosRankSum=1.699;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2275,258,0 chrXV 874225 . A G 2110 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.21;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2143,243,0 chrXV 874238 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.95;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2308,255,0 chrXV 874326 . C A 2213 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.35;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2246,249,0 chrXV 874350 . A C 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.774;QD=22.48;ReadPosRankSum=1.658;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2146,243,0 chrXV 874388 . A T 1834 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.33;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1867,210,0 chrXV 874455 . T C 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.530;QD=22.18;ReadPosRankSum=1.698;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2318,264,0 chrXV 874666 . T C 2450 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.87;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2483,282,0 chrXV 874736 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=16.54;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1786,207,0 chrXV 874742 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.4412;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=17.35;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1855,204,0 chrXV 874982 . A T 2487 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=16.15;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2520,285,0 chrXV 875004 . T C 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.363;HaplotypeScore=6.4398;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.749;QD=12.35;ReadPosRankSum=1.683;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:1786,207,0 chrXV 875094 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.317;QD=22.83;ReadPosRankSum=1.713;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4246,480,0 chrXV 875332 . A T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.85;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3863,429,0 chrXV 875566 . C A 2390 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.13;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2423,270,0 chrXV 875572 . A C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.768;QD=19.66;ReadPosRankSum=1.702;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2313,264,0 chrXV 875652 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.92;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2619,294,0 chrXV 875886 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.02;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2345,267,0 chrXV 876178 . G C 2326 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.49;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2359,267,0 chrXV 876330 . T C 1361 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.89;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1394,156,0 chrXV 876460 . A G 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=4.539;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=23.52;ReadPosRankSum=1.694;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2197,261,0 chrXV 876653 . C A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=7.4136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3397,375,0 chrXV 876891 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=168;Dels=0.00;FS=8.104;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.772;QD=20.85;ReadPosRankSum=2.405;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3503,408,0 chrXV 877263 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.30;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2560,282,0 chrXV 877527 . C T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.36;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3802,426,0 chrXV 877812 . C T 3876.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=24.07;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3876,426,0 chrXV 877951 . T G 4198.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=20.89;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4198,465,0 chrXV 877953 . G A 4192.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=21.28;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4192,462,0 chrXV 877970 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.3755;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=17.83;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:3993,438,0 chrXV 878000 . G C 3678.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=16.79;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:3678,417,0 chrXV 878028 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.68;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:4155,456,0 chrXV 878041 . T C 4370.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.6776;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.48;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:4370,495,0 chrXV 878089 . C A 4894.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.98;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4894,555,0 chrXV 878115 . C T 5307.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.68;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5307,591,0 chrXV 878178 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.88;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4050,453,0 chrXV 878292 . G T 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=162;Dels=0.00;FS=5.414;HaplotypeScore=14.6837;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.758;QD=21.78;ReadPosRankSum=1.710;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3528,393,0 chrXV 878430 . C T 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.540;QD=24.28;ReadPosRankSum=1.278;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2995,330,0 chrXV 878704 . T A 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.672;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.358;QD=15.65;ReadPosRankSum=1.713;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:2928,345,0 chrXV 878721 . A C 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.485;QD=18.68;ReadPosRankSum=1.661;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3662,414,0 chrXV 878750 . G T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.1499;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.83;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3808,414,0 chrXV 878999 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=3.688;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.828;QD=21.08;ReadPosRankSum=-0.520;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3795,420,0 chrXV 879013 . A G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.594;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=1.691;QD=19.13;ReadPosRankSum=1.711;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3228,369,0 chrXV 879022 . T C 2947 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=17.75;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2980,345,0 chrXV 879067 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=17.7507;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=16.69;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2821,312,0 chrXV 879097 . T G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.069;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-1.617;QD=17.39;ReadPosRankSum=1.709;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2659,309,0 chrXV 879103 . G C 2815 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.28;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2848,318,0 chrXV 879127 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.80;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2988,345,0 chrXV 879175 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-1.075;QD=18.15;ReadPosRankSum=1.712;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3246,363,0 chrXV 879184 . C A 3103 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.9081;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.53;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3136,348,0 chrXV 879343 . T A 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=3.041;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.970;QD=21.25;ReadPosRankSum=1.634;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3029,348,0 chrXV 879406 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.67;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3480,393,0 chrXV 879676 . G A 4746.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.3175;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.09;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4746,522,0 chrXV 880012 . C T 4867.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.78;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:4867,540,0 chrXV 880027 . G A 5236.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.28;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5236,576,0 chrXV 880543 . T C 2536 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=19.81;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2569,291,0 chrXV 880556 . A G 2591 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.73;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2624,297,0 chrXV 880701 . A T 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.554;DP=151;Dels=0.00;FS=6.080;HaplotypeScore=10.9932;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.620;QD=22.12;ReadPosRankSum=2.927;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3340,366,0 chrXV 880789 . C T 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=138;Dels=0.00;FS=3.545;HaplotypeScore=8.3174;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.728;QD=22.14;ReadPosRankSum=-0.853;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3088,345,0 chrXV 880986 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.8073;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.88;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4131,450,0 chrXV 881011 . T C 3109 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.32;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3142,363,0 chrXV 881099 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=207;Dels=0.00;FS=10.159;HaplotypeScore=12.0929;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.278;QD=21.13;ReadPosRankSum=2.907;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4374,486,0 chrXV 881147 . C T 5144.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.0084;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.86;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5144,561,0 chrXV 881292 . C T 4930.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.48;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4930,540,0 chrXV 881483 . G T 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.3624;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.257;QD=18.96;ReadPosRankSum=-0.561;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:3943,397,0 chrXV 881486 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.090;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.8397;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-0.401;QD=19.14;ReadPosRankSum=-0.162;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:3924,391,0 chrXV 881577 . A G 5292.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.83;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5292,621,0 chrXV 882091 . A G 7666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.747;DP=349;Dels=0.00;FS=7.916;HaplotypeScore=20.6592;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.542;QD=21.97;ReadPosRankSum=3.783;SB=-3.354e+03 GT:AD:DP:GQ:PL 1/1:5,341:349:99:7666,879,0 chrXV 882131 . T C 6990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=341;Dels=0.00;FS=13.423;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.000;QD=20.50;ReadPosRankSum=2.885;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:3,337:341:99:6990,813,0 chrXV 882322 . T C 4413.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.34;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4413,507,0 chrXV 882343 . A G 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=211;Dels=0.00;FS=5.317;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.357;QD=19.57;ReadPosRankSum=2.919;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:4129,474,0 chrXV 882544 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.17;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2332,258,0 chrXV 882911 . G C 3376.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.61;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3376,378,0 chrXV 883100 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.58;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3974,465,0 chrXV 883315 . T C 6365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=270;Dels=0.00;FS=2.676;HaplotypeScore=18.6811;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.359;QD=23.57;ReadPosRankSum=2.422;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:2,268:270:99:6365,726,0 chrXV 883783 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.32;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4050,459,0 chrXV 883831 . T G 3680.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1818;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.91;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3680,417,0 chrXV 883966 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.4800;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.52;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3314,366,0 chrXV 884035 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.38;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3414,396,0 chrXV 884521 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.54;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2929,318,0 chrXV 884566 . A G 2830 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.39;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2863,315,0 chrXV 884596 . T C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=1.067;QD=20.52;ReadPosRankSum=1.686;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3132,354,0 chrXV 884606 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.95;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3085,342,0 chrXV 884667 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.1421;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.642;QD=21.50;ReadPosRankSum=1.689;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3548,405,0 chrXV 884876 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.36;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3298,357,0 chrXV 884877 . T C 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.192;QD=19.08;ReadPosRankSum=1.711;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3143,360,0 chrXV 885209 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.35;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3022,336,0 chrXV 885299 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=152;Dels=0.00;FS=4.386;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.571;QD=20.48;ReadPosRankSum=1.709;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3146,369,0 chrXV 885669 . A G 3437.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.87;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3437,393,0 chrXV 885692 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=5.441;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.377;QD=23.26;ReadPosRankSum=1.711;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3745,432,0 chrXV 885956 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.8133;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.58;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3076,342,0 chrXV 887066 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.5694;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.597;QD=23.01;ReadPosRankSum=-1.116;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4165,456,0 chrXV 887734 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.32;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2511,276,0 chrXV 887904 . A G 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=99;Dels=0.00;FS=2.922;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.597;QD=21.43;ReadPosRankSum=2.374;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,95:99:99:2155,249,0 chrXV 888126 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=132;Dels=0.00;FS=6.535;HaplotypeScore=9.7666;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.178;QD=23.25;ReadPosRankSum=2.412;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3102,348,0 chrXV 888445 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.447;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.610;QD=23.79;ReadPosRankSum=1.659;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3378,384,0 chrXV 888479 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=4.097;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.626;QD=24.17;ReadPosRankSum=1.706;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3224,363,0 chrXV 888546 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.42;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3956,438,0 chrXV 888666 . T C 2906 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.21;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2939,339,0 chrXV 888891 . C A 1621 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6723;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=15.89;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1654,186,0 chrXV 889336 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=7.972;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.875;QD=22.74;ReadPosRankSum=2.288;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3798,441,0 chrXV 889642 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9854;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.54;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1772,201,0 chrXV 889741 . G A 515 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=11.6989;MLEAC=2;MLEAF=1.00;MQ=62.25;MQ0=0;QD=14.71;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:63:548,63,0 chrXV 889988 . A T 2638 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.43;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2671,288,0 chrXV 890036 . C G 3870.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.50;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3870,441,0 chrXV 890409 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.812;HaplotypeScore=11.1910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.701;QD=22.17;ReadPosRankSum=1.693;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3969,450,0 chrXV 890957 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.16;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4331,474,0 chrXV 891275 . G C 2815 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=20.85;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2848,324,0 chrXV 891444 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=3.769;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.965;QD=23.05;ReadPosRankSum=1.706;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:3098,348,0 chrXV 891508 . A G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.219;QD=21.43;ReadPosRankSum=1.698;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2262,258,0 chrXV 891617 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=24.31;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2683,297,0 chrXV 891758 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.96;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2651,297,0 chrXV 891816 . T C 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.4827;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;MQRankSum=0.414;QD=17.75;ReadPosRankSum=1.680;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2411,273,0 chrXV 891823 . C T 2073 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=16.99;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2106,240,0 chrXV 891827 . G C 2100 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=17.07;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2133,240,0 chrXV 891830 . C T 2069 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=16.69;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2102,234,0 chrXV 892334 . T G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=138;Dels=0.00;FS=7.213;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.193;QD=21.83;ReadPosRankSum=2.378;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3045,345,0 chrXV 892523 . T G 2179 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.70;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2212,252,0 chrXV 892725 . T C 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=122;Dels=0.00;FS=5.217;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.254;QD=19.36;ReadPosRankSum=3.095;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:4,118:122:99:2395,273,0 chrXV 892736 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.39;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2579,279,0 chrXV 892829 . A C 2952 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.88;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2985,339,0 chrXV 892863 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.15;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3426,399,0 chrXV 893015 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.34;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4411,495,0 chrXV 893213 . A G 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=137;Dels=0.00;FS=2.586;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.873;QD=19.12;ReadPosRankSum=2.918;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:2652,300,0 chrXV 893238 . T C 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=4.354;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.810;QD=19.02;ReadPosRankSum=1.700;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2125,252,0 chrXV 893597 . T G 4061.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.75;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4061,456,0 chrXV 893796 . T A 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=145;Dels=0.00;FS=7.006;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.500;QD=23.64;ReadPosRankSum=2.399;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3428,372,0 chrXV 894153 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1923,216,0 chrXV 894566 . T G 2174 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.89;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2207,249,0 chrXV 895062 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.03;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3878,423,0 chrXV 895152 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=203;Dels=0.00;FS=3.028;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.006;QD=20.41;ReadPosRankSum=2.401;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4144,468,0 chrXV 895158 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.11;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4123,474,0 chrXV 895314 . T C 3932.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.37;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3932,453,0 chrXV 895667 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.01;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2029,234,0 chrXV 895706 . T G 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=4.159;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.172;QD=16.99;ReadPosRankSum=1.627;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1732,201,0 chrXV 895842 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.42;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3856,435,0 chrXV 896045 . C G 4783.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.85;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4783,537,0 chrXV 896048 . C T 4826.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.70;SB=-3.176e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4826,528,0 chrXV 896084 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=18.00;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3438,396,0 chrXV 896376 . C G 2930 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2963,342,0 chrXV 896879 . C T 205.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;DP=117;Dels=0.03;FS=1.822;HaplotypeScore=12.5848;MLEAC=1;MLEAF=0.500;MQ=51.54;MQ0=0;MQRankSum=-4.486;QD=1.75;ReadPosRankSum=-7.400;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:75,39:114:99:235,0,1558 chrXV 896882 . T C 254.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.885;DP=126;Dels=0.02;FS=0.793;HaplotypeScore=18.5843;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=-4.345;QD=2.02;ReadPosRankSum=-6.204;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:78,45:123:99:284,0,1549 chrXV 896888 . C T 2504 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.1646;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.11;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2537,282,0 chrXV 896924 . G T 365.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;DP=155;Dels=0.00;FS=3.940;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=53.41;MQ0=0;MQRankSum=1.640;QD=2.35;ReadPosRankSum=-5.469;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:120,34:155:99:395,0,1834 chrXV 896933 . T G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.677;DP=143;Dels=0.00;FS=5.591;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=53.18;MQ0=0;MQRankSum=0.229;QD=0.30;ReadPosRankSum=-6.557;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,19:143:73:73,0,2127 chrXV 897596 . A G 4974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=232;Dels=0.00;FS=3.029;HaplotypeScore=18.8942;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=2.141;QD=21.44;ReadPosRankSum=2.428;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:4974,564,0 chrXV 897794 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.70;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4313,465,0 chrXV 898703 . A C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.859;QD=21.02;ReadPosRankSum=1.706;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2786,324,0 chrXV 898841 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.433;QD=22.93;ReadPosRankSum=1.681;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3198,369,0 chrXV 898990 . C A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.73;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3654,402,0 chrXV 899008 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=166;Dels=0.00;FS=9.596;HaplotypeScore=11.3967;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.776;QD=20.87;ReadPosRankSum=2.764;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3465,399,0 chrXV 899059 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=184;Dels=0.00;FS=2.903;HaplotypeScore=11.7892;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.515;QD=21.09;ReadPosRankSum=2.369;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3880,447,0 chrXV 899349 . C A 4027.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6933;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.37;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4027,444,0 chrXV 899806 . T A 4547.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.93;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4547,504,0 chrXV 900141 . T C 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=102;Dels=0.00;FS=5.850;HaplotypeScore=5.5432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.693;QD=21.28;ReadPosRankSum=1.697;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2204,261,0 chrXV 900879 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.25;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3234,372,0 chrXV 900929 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.023;QD=21.12;ReadPosRankSum=2.284;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2568,297,0 chrXV 900947 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.415;QD=23.33;ReadPosRankSum=1.674;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2833,321,0 chrXV 900977 . A G 2726 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.63;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2759,315,0 chrXV 901125 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=150;Dels=0.00;FS=3.921;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.030;QD=20.98;ReadPosRankSum=1.662;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3180,369,0 chrXV 901517 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.16;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2626,285,0 chrXV 901621 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2002,234,0 chrXV 902182 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.486;QD=25.41;ReadPosRankSum=1.708;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3583,405,0 chrXV 902623 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2577,282,0 chrXV 902817 . A T 2616 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.62;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2649,303,0 chrXV 902953 . A G 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=134;Dels=0.00;FS=3.563;HaplotypeScore=9.6273;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.879;QD=22.99;ReadPosRankSum=1.706;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3114,354,0 chrXV 903002 . A G 3113 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6424;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.41;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3146,357,0 chrXV 903164 . A G 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.669;QD=23.89;ReadPosRankSum=1.702;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2757,312,0 chrXV 903193 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.28;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2873,315,0 chrXV 903220 . T C 2492 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.86;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2525,288,0 chrXV 903319 . T C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.668;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.446;QD=21.64;ReadPosRankSum=1.703;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2651,303,0 chrXV 903452 . C A 2684 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.81;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2717,297,0 chrXV 903503 . A T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.86;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3337,378,0 chrXV 903530 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=153;Dels=0.00;FS=13.728;HaplotypeScore=12.9198;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.533;QD=21.85;ReadPosRankSum=2.849;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3343,378,0 chrXV 903669 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.606;QD=20.23;ReadPosRankSum=1.711;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3318,378,0 chrXV 903843 . T G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.791;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=-0.767;QD=18.64;ReadPosRankSum=1.688;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3016,351,0 chrXV 903846 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=19.66;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3080,336,0 chrXV 903919 . G T 2350 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.75;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2383,261,0 chrXV 904326 . C G 3090 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.46;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3123,351,0 chrXV 904342 . T C 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=124.0197;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.057;QD=18.17;ReadPosRankSum=1.709;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2831,324,0 chrXV 904817 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.37;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2136,246,0 chrXV 904872 . G C 1820 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.41;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1853,213,0 chrXV 904900 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.27;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2373,270,0 chrXV 905016 . C A 3170 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.48;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3203,345,0 chrXV 905324 . T A 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.605;DP=204;Dels=0.00;FS=12.105;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-1.066;QD=19.30;ReadPosRankSum=3.720;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:5,199:204:99:3938,429,0 chrXV 905332 . A T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.83;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3656,417,0 chrXV 905341 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=17.41;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3377,381,0 chrXV 905380 . A G 3174 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=16.45;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3207,372,0 chrXV 905482 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.75;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3785,420,0 chrXV 905729 . A G 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.088;QD=20.71;ReadPosRankSum=2.384;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2352,267,0 chrXV 905751 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.05;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2643,291,0 chrXV 905801 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.61;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2204,240,0 chrXV 905895 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=11.2651;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.16;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1125,123,0 chrXV 906405 . G C 2655 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.91;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2688,306,0 chrXV 907000 . T C 6123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=295;Dels=0.00;FS=2.666;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.246;QD=20.76;ReadPosRankSum=2.424;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:2,292:295:99:6123,693,0 chrXV 907011 . G A 6381.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=8.2030;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.45;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:6381,711,0 chrXV 907061 . A G 5074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=6.6081;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-1.253;QD=16.64;ReadPosRankSum=1.652;SB=-3.682e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:5074,591,0 chrXV 907068 . T A 4899.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=16.17;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:4899,540,0 chrXV 907331 . C T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.05;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3814,420,0 chrXV 907575 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=21.90;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3417,393,0 chrXV 907587 . C T 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;MQRankSum=-0.094;QD=21.51;ReadPosRankSum=0.421;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3217,336,0 chrXV 907642 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=19.62;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2544,282,0 chrXV 907649 . G A 2234 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=19.26;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2267,252,0 chrXV 907677 . G T 2141 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=17.13;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2174,234,0 chrXV 907701 . T A 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;MQRankSum=1.278;QD=10.47;ReadPosRankSum=1.675;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1310,153,0 chrXV 907705 . T C 1210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=2.664;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;MQRankSum=-0.310;QD=9.84;ReadPosRankSum=2.410;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:1243,138,0 chrXV 907771 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5929;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;QD=12.12;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1596,171,0 chrXV 907801 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=16.20;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2123,240,0 chrXV 907896 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=21.59;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2602,285,0 chrXV 907920 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=20.68;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2969,330,0 chrXV 908145 . G A 1299 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=15.28;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1332,147,0 chrXV 908297 . A T 1549 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.82;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1582,180,0 chrXV 908351 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=22.63;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1685,192,0 chrXV 908529 . A G 2377 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.41;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2410,273,0 chrXV 908551 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.62;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2680,291,0 chrXV 908634 . A G 1888 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=15.48;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1921,228,0 chrXV 908691 . G A 1858 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=12.55;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1891,213,0 chrXV 908692 . T C 1883 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=150;Dels=0.01;FS=2.600;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;MQRankSum=-0.523;QD=12.55;ReadPosRankSum=2.400;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:1916,219,0 chrXV 908694 . G C 1960 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=15.2943;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=12.65;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:1993,225,0 chrXV 908860 . T A 5225.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=23.54;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5225,570,0 chrXV 910022 . G A 6424.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=19.7028;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.54;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6424,697,0 chrXV 910186 . T C 4866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=227;Dels=0.00;FS=9.504;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.667;QD=21.44;ReadPosRankSum=2.395;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:4866,549,0 chrXV 910230 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.9667;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.40;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4729,534,0 chrXV 910524 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=146;Dels=0.00;FS=3.040;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.743;QD=22.65;ReadPosRankSum=2.416;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3307,381,0 chrXV 910563 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=147;Dels=0.00;FS=3.030;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.178;QD=18.76;ReadPosRankSum=2.416;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:2790,327,0 chrXV 910566 . C T 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.323;QD=20.05;ReadPosRankSum=-0.131;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2961,330,0 chrXV 910602 . A G 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=154;Dels=0.00;FS=3.185;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.026;QD=17.75;ReadPosRankSum=1.709;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2766,318,0 chrXV 910659 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.07;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3611,396,0 chrXV 910695 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=155;Dels=0.00;FS=5.564;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.641;QD=19.83;ReadPosRankSum=2.915;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3107,348,0 chrXV 910701 . T G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=168;Dels=0.00;FS=2.719;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.490;QD=18.93;ReadPosRankSum=2.376;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3214,369,0 chrXV 910887 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=177;Dels=0.00;FS=9.794;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.608;QD=22.18;ReadPosRankSum=2.926;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3925,453,0 chrXV 910977 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=192;Dels=0.00;FS=3.174;HaplotypeScore=8.6151;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=1.017;QD=22.06;ReadPosRankSum=1.677;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4236,492,0 chrXV 910998 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.93;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3816,426,0 chrXV 911046 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.50;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3308,369,0 chrXV 911484 . T C 2693 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.72;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2726,312,0 chrXV 911633 . A G 2024 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=20.87;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2057,228,0 chrXV 911636 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=19.41;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1955,231,0 chrXV 911767 . A C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=1.576;QD=17.44;ReadPosRankSum=-1.233;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2004,228,0 chrXV 911792 . G A 2071 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.26;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2104,231,0 chrXV 911894 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.960;QD=20.40;ReadPosRankSum=1.685;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3052,342,0 chrXV 911906 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.0327;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.121;QD=18.71;ReadPosRankSum=2.350;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2802,318,0 chrXV 912385 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3947,453,0 chrXV 912636 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.20;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3131,348,0 chrXV 912693 . G A 3026 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.10;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3059,348,0 chrXV 912729 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9730;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.27;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2648,294,0 chrXV 912908 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.2402;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.34;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2962,333,0 chrXV 913133 . T A 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.169;QD=23.05;ReadPosRankSum=1.648;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2868,321,0 chrXV 913164 . C A 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.9909;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.153;QD=23.18;ReadPosRankSum=-0.968;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3186,354,0 chrXV 913353 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.65;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3761,429,0 chrXV 913391 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=3.585;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.360;QD=23.93;ReadPosRankSum=1.675;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2952,333,0 chrXV 913421 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.17;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2523,270,0 chrXV 913480 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.0018;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.885;QD=19.76;ReadPosRankSum=1.682;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2780,309,0 chrXV 913489 . C T 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.1647;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.701;QD=19.07;ReadPosRankSum=2.202;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2893,321,0 chrXV 914118 . G A 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=3.522;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.395;QD=22.45;ReadPosRankSum=0.577;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1672,186,0 chrXV 914264 . T C 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.688;QD=20.11;ReadPosRankSum=1.707;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2788,327,0 chrXV 914282 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.41;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2323,261,0 chrXV 914306 . T C 2048 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.62;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2081,237,0 chrXV 914507 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.285;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.002;QD=23.40;ReadPosRankSum=1.661;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3440,393,0 chrXV 914716 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.3317;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.93;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3807,417,0 chrXV 914859 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3342,375,0 chrXV 915096 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=142;Dels=0.00;FS=4.865;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.283;QD=22.39;ReadPosRankSum=1.708;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3213,366,0 chrXV 915310 . C G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.9378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3352,375,0 chrXV 915402 . T A 2664 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.30;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2697,300,0 chrXV 915406 . T C 2488 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.71;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2521,291,0 chrXV 915416 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=130;Dels=0.00;FS=5.540;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.651;QD=19.06;ReadPosRankSum=2.900;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2511,282,0 chrXV 915553 . A C 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=9.069;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.557;QD=24.22;ReadPosRankSum=2.389;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3923,447,0 chrXV 915598 . A C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=3.670;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.073;QD=22.42;ReadPosRankSum=1.683;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3216,369,0 chrXV 915687 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1920;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.208;QD=23.50;ReadPosRankSum=1.712;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4159,465,0 chrXV 915725 . G C 4716.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.00;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4716,552,0 chrXV 915759 . G A 5016.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.47;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5016,567,0 chrXV 915972 . C A 3068 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=19.06;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3101,339,0 chrXV 915979 . G T 3194 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8034;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.48;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3227,357,0 chrXV 916053 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=17.82;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:3956,444,0 chrXV 916056 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=16.96;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:3867,435,0 chrXV 916094 . C G 3390.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=14.93;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:3390,387,0 chrXV 916104 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=223;Dels=0.00;FS=15.568;HaplotypeScore=11.0410;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=-2.225;QD=13.48;ReadPosRankSum=2.940;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:3,216:223:99:3038,348,0 chrXV 916139 . A T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.19;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4049,450,0 chrXV 916668 . C T 5279.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.46;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5279,579,0 chrXV 916839 . G A 4700.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.71;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4700,546,0 chrXV 917139 . A G 5762.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.8135;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5762,660,0 chrXV 917624 . A G 2968 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.15;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3001,339,0 chrXV 917763 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.38;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4120,456,0 chrXV 918228 . T A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.51;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3574,387,0 chrXV 918837 . T G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.501;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.601;QD=20.02;ReadPosRankSum=1.667;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3236,381,0 chrXV 919242 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.76;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3903,453,0 chrXV 919425 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=184;Dels=0.00;FS=7.050;HaplotypeScore=11.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.236;QD=20.78;ReadPosRankSum=2.396;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3823,453,0 chrXV 919749 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=180;Dels=0.00;FS=7.707;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.571;QD=22.18;ReadPosRankSum=2.395;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3992,462,0 chrXV 920281 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.13;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3017,333,0 chrXV 920643 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3420,393,0 chrXV 920814 . A C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=209;Dels=0.00;FS=6.168;HaplotypeScore=11.7933;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.357;QD=21.66;ReadPosRankSum=2.356;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4527,528,0 chrXV 920857 . G A 5222.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.63;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5222,564,0 chrXV 921242 . C A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.08;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4479,489,0 chrXV 921302 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=178;Dels=0.00;FS=3.992;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.759;QD=22.53;ReadPosRankSum=1.674;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4010,453,0 chrXV 921405 . A G 2797 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.20;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2830,324,0 chrXV 922090 . C T 3818.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.86;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3818,417,0 chrXV 922228 . C T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.8981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.04;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4862,540,0 chrXV 922453 . A C 4912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=242;Dels=0.00;FS=5.598;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.271;QD=20.30;ReadPosRankSum=2.913;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:3,238:242:99:4912,573,0 chrXV 922567 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.162;QD=21.09;ReadPosRankSum=1.666;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3354,375,0 chrXV 922957 . C T 1167 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.78;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1200,135,0 chrXV 923092 . T C 689 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=16.02;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:722,87,0 chrXV 923431 . T A 3049 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.26;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3082,342,0 chrXV 923451 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6406;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.57;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2900,318,0 chrXV 923567 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.85;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3268,372,0 chrXV 923616 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.8406;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.70;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2931,321,0 chrXV 923827 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.33;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2936,336,0 chrXV 923937 . T A 5033.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.0426;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.55;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5033,552,0 chrXV 924135 . A C 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.617;QD=21.64;ReadPosRankSum=1.713;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3917,459,0 chrXV 924450 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=190;Dels=0.00;FS=5.558;HaplotypeScore=13.7950;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.463;QD=21.94;ReadPosRankSum=2.931;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4169,471,0 chrXV 924485 . A C 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=3.458;HaplotypeScore=13.9039;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.577;QD=21.71;ReadPosRankSum=1.698;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4472,519,0 chrXV 924624 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.0017;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.84;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5197,582,0 chrXV 924831 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=3.398;HaplotypeScore=4.3568;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.628;QD=22.13;ReadPosRankSum=1.715;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4403,501,0 chrXV 924838 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.05;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4231,459,0 chrXV 925008 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.98;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2451,276,0 chrXV 925317 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=22.60;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3062,345,0 chrXV 925525 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.58;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3227,357,0 chrXV 925552 . A C 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=7.142;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=0.042;QD=17.01;ReadPosRankSum=2.416;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:2534,294,0 chrXV 925556 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.20;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2441,267,0 chrXV 925859 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.57;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4131,450,0 chrXV 925933 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=198;Dels=0.00;FS=6.053;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.964;QD=20.82;ReadPosRankSum=2.954;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:4,193:198:99:4122,480,0 chrXV 926126 . C T 5620.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.7676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5620,603,0 chrXV 926881 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9679;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.09;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3126,342,0 chrXV 926925 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.14;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2579,285,0 chrXV 928093 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3070,336,0 chrXV 928129 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.9951;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.37;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3273,360,0 chrXV 928483 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3264,357,0 chrXV 928570 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.52;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2659,300,0 chrXV 928579 . T C 2647 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.35;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2680,306,0 chrXV 928755 . A G 2429 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.81;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2462,279,0 chrXV 928916 . T C 2912 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.48;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2945,333,0 chrXV 929121 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8790;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.45;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3223,360,0 chrXV 929212 . G A 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=16.5036;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=2.349;QD=20.30;ReadPosRankSum=0.109;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3038,307,0 chrXV 929593 . C T 2484 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2517,288,0 chrXV 929887 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.2359;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.555;QD=23.58;ReadPosRankSum=2.349;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4621,540,0 chrXV 929923 . A G 4430.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.2783;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.82;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4430,501,0 chrXV 930026 . T C 5479.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.31;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5479,615,0 chrXV 930118 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=192;Dels=0.00;FS=2.898;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.441;QD=21.25;ReadPosRankSum=2.398;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4080,468,0 chrXV 930131 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.37;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3911,444,0 chrXV 930244 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=200;Dels=0.00;FS=10.583;HaplotypeScore=12.6351;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.505;QD=21.14;ReadPosRankSum=2.944;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:3,194:200:99:4228,492,0 chrXV 930310 . T C 3119 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.28;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3152,363,0 chrXV 930799 . A G 2049 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.83;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2082,240,0 chrXV 931168 . T C 2785 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.46;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2818,318,0 chrXV 931409 . C G 2353 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.82;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2386,270,0 chrXV 931419 . G T 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=6.7736;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-1.076;QD=20.26;ReadPosRankSum=2.368;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2464,279,0 chrXV 931516 . A G 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=7.240;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.115;QD=21.70;ReadPosRankSum=2.398;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2116,249,0 chrXV 931550 . A C 1913 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.74;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1946,222,0 chrXV 931616 . T C 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=107;Dels=0.00;FS=6.849;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.387;QD=20.51;ReadPosRankSum=2.403;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,103:107:99:2228,249,0 chrXV 931623 . A G 2263 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.95;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2296,267,0 chrXV 931681 . T C 101.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.405;DP=91;Dels=0.00;FS=2.276;HaplotypeScore=84.1286;MLEAC=1;MLEAF=0.500;MQ=53.88;MQ0=0;MQRankSum=-1.246;QD=1.12;ReadPosRankSum=-5.416;SB=-1.864e+01 GT:AD:DP:GQ:PL 0/1:75,16:91:5:131,0,5 chrXV 931682 . A C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;DP=90;Dels=0.00;FS=1.070;HaplotypeScore=84.1286;MLEAC=1;MLEAF=0.500;MQ=53.80;MQ0=0;MQRankSum=1.656;QD=0.18;ReadPosRankSum=5.522;SB=-7.900e+02 GT:AD:DP:GQ:PL 0/1:15,75:90:46:46,0,105 chrXV 931761 . G A 2501 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.56;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2534,279,0 chrXV 931901 . C A 2737 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.72;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2770,303,0 chrXV 932032 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.43;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:3613,420,0 chrXV 932073 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.33;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3223,354,0 chrXV 932327 . C T 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=3.505;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.640;QD=20.50;ReadPosRankSum=1.546;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2739,303,0 chrXV 932673 . A G 4639.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1971;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.31;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4639,528,0 chrXV 933245 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.98;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3837,426,0 chrXV 933321 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.60;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3267,360,0 chrXV 933398 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=131;Dels=0.00;FS=9.234;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.301;QD=23.08;ReadPosRankSum=3.324;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:3056,351,0 chrXV 933470 . C A 2802 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.35;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2835,324,0 chrXV 933555 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=3.5806;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.14;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2358,255,0 chrXV 933560 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.81;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2252,258,0 chrXV 933602 . G A 2020 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.24;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2053,228,0 chrXV 933812 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.45;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2425,270,0 chrXV 933920 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.56;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1575,183,0 chrXV 934060 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=118;Dels=0.00;FS=6.360;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.053;QD=21.28;ReadPosRankSum=2.387;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2544,291,0 chrXV 934286 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.681;QD=23.78;ReadPosRankSum=2.404;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3923,444,0 chrXV 934730 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=19.2294;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.10;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4331,498,0 chrXV 935126 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.99;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3817,417,0 chrXV 935276 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=174;Dels=0.00;FS=2.799;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.019;QD=22.53;ReadPosRankSum=2.421;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,168:174:99:3920,447,0 chrXV 935480 . G C 3901.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0036;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.67;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3901,444,0 chrXV 935504 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.33;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3840,429,0 chrXV 935963 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8530;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.57;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3636,405,0 chrXV 936401 . C T 2055 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.4693;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.76;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2088,240,0 chrXV 936652 . A C 2537 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.45;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2570,291,0 chrXV 936863 . T C 6136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=256;Dels=0.00;FS=2.900;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.446;QD=23.97;ReadPosRankSum=2.402;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:2,254:256:99:6136,696,0 chrXV 936895 . C T 7228.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=15.3345;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.78;SB=-3.627e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:7228,807,0 chrXV 937344 . G C 2755 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4657;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.27;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2788,330,0 chrXV 937658 . C G 4400.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.7318;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.89;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4400,495,0 chrXV 937692 . G A 4106.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.08;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4106,456,0 chrXV 937693 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.34;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4178,456,0 chrXV 937840 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.5698;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.619;QD=21.87;ReadPosRankSum=1.711;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3630,408,0 chrXV 937997 . G T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.7275;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.58;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4033,441,0 chrXV 938069 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=143;Dels=0.00;FS=7.974;HaplotypeScore=8.3475;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.926;QD=22.01;ReadPosRankSum=2.415;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3180,363,0 chrXV 938096 . T A 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=135;Dels=0.00;FS=3.002;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.064;QD=22.96;ReadPosRankSum=2.304;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3132,351,0 chrXV 938134 . G T 3096 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.35;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3129,339,0 chrXV 938143 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.0891;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.62;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3231,354,0 chrXV 938597 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.73;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3432,390,0 chrXV 938699 . A G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.357;QD=19.44;ReadPosRankSum=1.681;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2677,309,0 chrXV 939507 . A G 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.906;QD=18.56;ReadPosRankSum=2.870;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:99:1035,120,0 chrXV 939549 . A G 707 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.83;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:740,84,0 chrXV 939816 . T A 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=128;Dels=0.00;FS=2.103;HaplotypeScore=10.8437;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.843;QD=22.29;ReadPosRankSum=1.165;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2886,318,0 chrXV 939870 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.58;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3296,366,0 chrXV 940002 . T C 3019 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.54;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3052,345,0 chrXV 940023 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.44;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3581,405,0 chrXV 940429 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.79;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4164,477,0 chrXV 940454 . A G 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=5.037;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.695;QD=23.39;ReadPosRankSum=1.713;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4327,489,0 chrXV 940838 . G A 1151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.804;QD=17.98;ReadPosRankSum=2.254;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1184,135,0 chrXV 940839 . A G 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.742;QD=18.03;ReadPosRankSum=1.567;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1187,135,0 chrXV 941405 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.60;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3586,399,0 chrXV 941706 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.15;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2910,327,0 chrXV 941715 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.05;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2740,315,0 chrXV 942129 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.22;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3506,393,0 chrXV 942165 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.89;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3548,390,0 chrXV 942317 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3999;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.94;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3579,405,0 chrXV 942594 . T C 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=181;Dels=0.00;FS=2.569;HaplotypeScore=16.8422;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.506;QD=23.14;ReadPosRankSum=2.917;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4188,480,0 chrXV 942630 . A G 5008.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5008,558,0 chrXV 942722 . T C 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.201;DP=203;Dels=0.00;FS=8.214;HaplotypeScore=17.5695;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.073;QD=21.70;ReadPosRankSum=3.330;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:4,198:203:99:4406,504,0 chrXV 942759 . T C 5590.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.1700;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.59;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5590,648,0 chrXV 943167 . A C 4165.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4165,474,0 chrXV 943283 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.292;QD=22.20;ReadPosRankSum=1.659;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4240,486,0 chrXV 943688 . C T 6679.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=17.9047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-4.081e+03 GT:AD:DP:GQ:PL 1/1:0,313:314:99:6679,735,0 chrXV 944039 . A T 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=160;Dels=0.00;FS=3.032;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.607;QD=24.11;ReadPosRankSum=2.357;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3858,423,0 chrXV 944430 . T C 836 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=15.77;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:869,99,0 chrXV 944698 . A T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.52;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3535,393,0 chrXV 945099 . A G 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=158;Dels=0.00;FS=2.514;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.191;QD=19.91;ReadPosRankSum=2.930;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3178,363,0 chrXV 945153 . G C 3152 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.01;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3185,375,0 chrXV 945177 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=149;Dels=0.00;FS=2.444;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.517;QD=22.09;ReadPosRankSum=2.912;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3291,378,0 chrXV 945252 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.73;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3260,354,0 chrXV 945621 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.24;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2477,273,0 chrXV 945624 . T C 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.621;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=1.164;QD=18.13;ReadPosRankSum=1.675;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2299,270,0 chrXV 945647 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.81;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2648,297,0 chrXV 945784 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.71;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2378,261,0 chrXV 945900 . T A 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.735;DP=108;Dels=0.00;FS=4.690;HaplotypeScore=6.0803;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=1.321;QD=17.25;ReadPosRankSum=3.480;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:6,102:108:99:1896,213,0 chrXV 945902 . A T 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.957;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.0803;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.156;QD=18.33;ReadPosRankSum=4.126;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:7,97:104:99:1939,200,0 chrXV 945918 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.35;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1987,222,0 chrXV 946062 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.40;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1424,165,0 chrXV 946069 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.78;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1363,153,0 chrXV 946490 . A C 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.113;QD=19.37;ReadPosRankSum=2.415;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4184,480,0 chrXV 946536 . A G 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.998;QD=21.10;ReadPosRankSum=1.664;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4283,498,0 chrXV 946808 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.54;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3049,336,0 chrXV 947625 . G A 4877.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.77;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4877,540,0 chrXV 947892 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=2.802;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.999;QD=22.02;ReadPosRankSum=2.415;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3204,363,0 chrXV 948120 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.75;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4642,534,0 chrXV 948408 . C T 5219.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=21.3253;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.02;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,233:237:99:5219,591,0 chrXV 948744 . T G 3687.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.34;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3687,414,0 chrXV 948819 . A G 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.268;QD=21.51;ReadPosRankSum=1.013;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3088,331,0 chrXV 949446 . T C 36.97 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=131.4451;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=0.26;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,141:144:9:69,9,0 chrXV 949455 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=17.26;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2622,285,0 chrXV 949488 . G C 1931 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=9.1880;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=12.54;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1964,228,0 chrXV 949494 . A G 1714 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=12.42;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1747,201,0 chrXV 949553 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=15.93;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1785,207,0 chrXV 949570 . C G 1955 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.77;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1988,225,0 chrXV 949900 . T C 4129.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.4716;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4129,471,0 chrXV 950129 . C T 5023.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.13;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5023,558,0 chrXV 950429 . T A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3661,402,0 chrXV 950622 . T G 2680 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.97;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2713,303,0 chrXV 950741 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=125;Dels=0.00;FS=6.490;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.327;QD=21.55;ReadPosRankSum=2.390;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2727,327,0 chrXV 950765 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.79;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2691,297,0 chrXV 950909 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.83;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2741,303,0 chrXV 950916 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.10;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2565,300,0 chrXV 951044 . T C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.654;QD=19.38;ReadPosRankSum=1.706;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2669,315,0 chrXV 951059 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.16;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2720,297,0 chrXV 951548 . A G 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=3.053;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.691;QD=23.27;ReadPosRankSum=2.400;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2313,261,0 chrXV 951742 . G C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3331,378,0 chrXV 951869 . C A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.62;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3596,402,0 chrXV 951962 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.628;DP=163;Dels=0.00;FS=3.065;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.152;QD=22.07;ReadPosRankSum=-0.368;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3598,386,0 chrXV 952140 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.6830;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.09;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3126,342,0 chrXV 952413 . T C 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.470;DP=118;Dels=0.00;FS=5.822;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.487;QD=21.30;ReadPosRankSum=2.940;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:3,113:118:99:2546,285,0 chrXV 952654 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=119;Dels=0.00;FS=3.043;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.824;QD=22.38;ReadPosRankSum=2.408;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2696,306,0 chrXV 952695 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.34;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2133,231,0 chrXV 952737 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=3.036;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.052;QD=20.23;ReadPosRankSum=2.408;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2461,279,0 chrXV 952742 . C A 2529 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.62;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2562,279,0 chrXV 952928 . T C 2023 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.23;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2056,231,0 chrXV 953190 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2210,246,0 chrXV 953320 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.33;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2489,276,0 chrXV 953577 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=110;Dels=0.00;FS=3.032;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.034;QD=21.85;ReadPosRankSum=2.405;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2436,273,0 chrXV 954013 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2917;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.32;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1366,150,0 chrXV 954024 . A G 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.979;QD=18.29;ReadPosRankSum=1.582;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1295,150,0 chrXV 954038 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.46;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1168,132,0 chrXV 954310 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.05;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1819,198,0 chrXV 954766 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=189;Dels=0.00;FS=11.662;HaplotypeScore=12.8289;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.672;QD=22.62;ReadPosRankSum=2.963;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4276,504,0 chrXV 955006 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3952;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.653;QD=20.86;ReadPosRankSum=1.713;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:3880,438,0 chrXV 955162 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.49;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2861,327,0 chrXV 955420 . T C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=124;Dels=0.00;FS=2.421;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.799;QD=22.87;ReadPosRankSum=3.387;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2869,330,0 chrXV 955483 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.14;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3075,345,0 chrXV 955552 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=20.32;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2999,333,0 chrXV 955553 . C A 3059 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.67;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3092,339,0 chrXV 956028 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.15;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2550,282,0 chrXV 956070 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=3.138;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.632;QD=22.12;ReadPosRankSum=1.707;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3085,351,0 chrXV 956137 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.26;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3419,384,0 chrXV 956382 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.03;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3700,411,0 chrXV 956617 . A G 2871 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.7971;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.59;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2904,333,0 chrXV 956880 . G C 2525 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.38;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2558,294,0 chrXV 956953 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.38;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3528,384,0 chrXV 957207 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.89;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4160,453,0 chrXV 957391 . A C 4153.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4153,471,0 chrXV 957460 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=6.721;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.130;QD=24.50;ReadPosRankSum=2.395;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3332,369,0 chrXV 957501 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.65;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2493,282,0 chrXV 957534 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.755;QD=23.71;ReadPosRankSum=1.703;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2807,315,0 chrXV 957717 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.15;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2713,294,0 chrXV 957993 . A G 2125 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.85;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2158,243,0 chrXV 958088 . A G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2055;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.719;QD=21.08;ReadPosRankSum=1.667;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2267,255,0 chrXV 958154 . T C 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=83;Dels=0.00;FS=6.351;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.605;QD=17.01;ReadPosRankSum=1.690;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1445,168,0 chrXV 958213 . T C 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.553;QD=21.21;ReadPosRankSum=1.673;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1263,141,0 chrXV 958310 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.76;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2150,249,0 chrXV 958333 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.76;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2311,249,0 chrXV 958391 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.68;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2920,318,0 chrXV 958713 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.87;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4345,474,0 chrXV 958743 . C A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.79;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4330,471,0 chrXV 958901 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=140;Dels=0.00;FS=3.796;HaplotypeScore=9.0939;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.436;QD=21.22;ReadPosRankSum=1.682;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3004,339,0 chrXV 959058 . G T 2252 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0640;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.11;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2285,261,0 chrXV 959231 . T C 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.115;QD=24.82;ReadPosRankSum=1.708;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3624,414,0 chrXV 959394 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.97;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3951,450,0 chrXV 959466 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.557;QD=21.33;ReadPosRankSum=1.712;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3754,432,0 chrXV 959511 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.72;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3627,417,0 chrXV 959637 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.410;QD=20.73;ReadPosRankSum=1.676;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:3897,447,0 chrXV 959649 . G A 4021.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.94;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4021,450,0 chrXV 959820 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.01;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3961,432,0 chrXV 960152 . G T 2934 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.90;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2967,330,0 chrXV 960232 . A C 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.2825;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.933;QD=20.12;ReadPosRankSum=1.703;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2447,282,0 chrXV 960346 . C A 2062 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.66;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2095,225,0 chrXV 960384 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.71;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2191,234,0 chrXV 960428 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.52;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2191,246,0 chrXV 960509 . A C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.617;QD=22.44;ReadPosRankSum=1.692;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2008,228,0 chrXV 960591 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.61;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1410,162,0 chrXV 960594 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.70;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1398,153,0 chrXV 961019 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.15;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3004,336,0 chrXV 961223 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=6.484;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.532;QD=21.04;ReadPosRankSum=2.405;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3471,402,0 chrXV 961391 . A G 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=198;Dels=0.00;FS=8.105;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.120;QD=23.64;ReadPosRankSum=2.374;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4681,513,0 chrXV 961586 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2274;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.14;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4296,480,0 chrXV 961850 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3329,366,0 chrXV 962816 . C T 5570.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=13.7655;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.21;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5570,627,0 chrXV 963149 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3749,408,0 chrXV 963377 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.91;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3642,408,0 chrXV 964349 . T C 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.656;QD=22.03;ReadPosRankSum=1.714;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4230,474,0 chrXV 964355 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=185;Dels=0.00;FS=2.992;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.701;QD=21.61;ReadPosRankSum=2.423;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3997,456,0 chrXV 964421 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=6.397;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.684;QD=22.29;ReadPosRankSum=2.402;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3432,390,0 chrXV 964655 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.08;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4217,471,0 chrXV 964661 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.029;QD=19.44;ReadPosRankSum=1.699;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4044,474,0 chrXV 965123 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3910,441,0 chrXV 965240 . G A 4995.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.67;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4995,552,0 chrXV 966067 . C A 2833 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1761;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.66;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2866,315,0 chrXV 966276 . T C 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0836;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.289;QD=20.55;ReadPosRankSum=1.704;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2664,303,0 chrXV 966317 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.59;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2789,318,0 chrXV 966325 . A G 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.034;QD=22.04;ReadPosRankSum=1.704;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2766,315,0 chrXV 966472 . G T 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.662;QD=22.33;ReadPosRankSum=0.507;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2244,226,0 chrXV 966542 . G A 488 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=15.74;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:60:521,60,0 chrXV 966621 . A G 2998 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.54;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3031,354,0 chrXV 966892 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=3.582;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.095;QD=22.59;ReadPosRankSum=1.708;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3343,381,0 chrXV 967170 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.57;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3465,381,0 chrXV 967248 . A G 4020.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=8.572;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.195;QD=20.62;ReadPosRankSum=2.424;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4020,474,0 chrXV 967253 . T G 3993.01 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.58;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3993,459,0 chrXV 967257 . A G 3976.01 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.93;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3976,456,0 chrXV 967263 . T C 3963.01 SnpCluster AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=21.08;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3963,444,0 chrXV 967506 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=20.5395;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.98;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3355,372,0 chrXV 967611 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.0766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3266,360,0 chrXV 967862 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=22.40;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2923,318,0 chrXV 968047 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.96;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2234,243,0 chrXV 968186 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.64;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3688,411,0 chrXV 968210 . C G 3276.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.99;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3276,372,0 chrXV 968244 . T G 3419.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5804;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.37;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3419,399,0 chrXV 968286 . T A 3132 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.53;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3165,360,0 chrXV 968332 . T G 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=3.310;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.655;QD=20.96;ReadPosRankSum=1.681;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2905,339,0 chrXV 968360 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.30;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3017,336,0 chrXV 968476 . G A 4408.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.09;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4408,489,0 chrXV 968504 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2666;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.51;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3444,387,0 chrXV 968918 . A T 2252 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=20.11;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2285,249,0 chrXV 968934 . T C 1757 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=15.69;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1790,204,0 chrXV 968938 . G A 1798 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=16.80;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1831,207,0 chrXV 968942 . C T 1554 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=15.24;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1587,180,0 chrXV 968970 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=15.80;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1487,168,0 chrXV 968991 . C T 1360 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=16.00;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1393,156,0 chrXV 969023 . A G 1369 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=18.25;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1402,159,0 chrXV 969046 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=18.21;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1362,153,0 chrXV 969067 . T C 1433 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.63;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1466,168,0 chrXV 969121 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=22.18;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1630,177,0 chrXV 969140 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=17.87;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1266,141,0 chrXV 969185 . T C 513 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;QD=13.86;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:63:546,63,0 chrXV 969196 . A G 364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;MQRankSum=-0.924;QD=12.13;ReadPosRankSum=1.617;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:45:397,45,0 chrXV 969226 . G A 535 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;QD=17.83;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:568,63,0 chrXV 969234 . C T 561 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=17.00;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:594,66,0 chrXV 969237 . C T 526 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=16.44;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:559,63,0 chrXV 969255 . C T 566 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=37.4569;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=13.80;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:69:599,69,0 chrXV 969272 . G A 759 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=14.88;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:90:792,90,0 chrXV 969326 . T G 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-1.064;QD=21.25;ReadPosRankSum=1.672;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1244,141,0 chrXV 969361 . T G 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=28.7949;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;MQRankSum=-0.471;QD=21.96;ReadPosRankSum=2.865;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:3,49:53:99:1241,138,0 chrXV 969390 . T C 1044 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=24.86;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1077,120,0 chrXV 969441 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=20.89;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1307,144,0 chrXV 969502 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=18.36;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1851,219,0 chrXV 969510 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=18.09;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1752,201,0 chrXV 969519 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=17.72;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1628,186,0 chrXV 969551 . G A 979 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;QD=10.88;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1012,114,0 chrXV 969557 . C A 922 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=10.02;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:955,105,0 chrXV 969569 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=12.05;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1310,141,0 chrXV 969591 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=14.83;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1783,195,0 chrXV 969660 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.557;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7309;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.699;QD=20.36;ReadPosRankSum=1.124;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3543,382,0 chrXV 969715 . A G 222.19 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.274;DP=166;Dels=0.00;FS=7.861;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-2.255;QD=1.34;ReadPosRankSum=-6.609;SB=1.81 GT:AD:DP:GQ:PL 1/1:147,18:166:8:254,8,0 chrXV 969902 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6566;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=21.79;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4249,477,0 chrXV 969936 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=164;Dels=0.00;FS=5.903;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=-0.348;QD=21.65;ReadPosRankSum=2.957;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:99:3551,405,0 chrXV 969961 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=23.22;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3297,375,0 chrXV 970020 . G T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7715;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=23.81;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3667,405,0 chrXV 970110 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=21.52;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2701,306,0 chrXV 970113 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=21.30;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2632,300,0 chrXV 970131 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;QD=20.38;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2234,261,0 chrXV 970141 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=0;QD=19.24;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1938,225,0 chrXV 970171 . C G 1654 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;MQRankSum=-1.015;QD=19.01;ReadPosRankSum=1.453;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1687,192,0 chrXV 970172 . C T 1632 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=18.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1665,195,0 chrXV 970181 . C T 1555 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=17.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1588,174,0 chrXV 970186 . G A 1588 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;QD=16.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1621,183,0 chrXV 970210 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.52;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,91:91:9:79,9,0 chrXV 970213 . A G 1296 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1329,147,0 chrXV 970228 . T A 1515 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=15.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1548,174,0 chrXV 970235 . T C 1569 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=15.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1602,183,0 chrXV 970266 . A G 1390 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=16.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1423,162,0 chrXV 976278 . G A 426 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=8.35;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:51:459,51,0 chrXV 976373 . A C 758 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=10.24;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:93:791,93,0 chrXV 976385 . T A 655 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=0.214;QD=8.97;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,72:73:78:688,78,0 chrXV 976389 . G A 586 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=8.62;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:69:619,69,0 chrXV 976390 . C G 585 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=8.60;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:72:618,72,0 chrXV 976397 . T A 820 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;MQRankSum=-2.935;QD=10.65;ReadPosRankSum=2.856;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:93:853,93,0 chrXV 976399 . C A 820 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;QD=10.51;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:93:853,93,0 chrXV 976400 . A G 813 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=10.29;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:96:846,96,0 chrXV 976544 . C G 1811 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=70.8002;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=21.31;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1844,213,0 chrXV 976552 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=68.3982;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=22.07;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1799,201,0 chrXV 976799 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6797;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.08;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1319,153,0 chrXV 976981 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.56;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1499,171,0 chrXV 976993 . T G 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.419;DP=83;Dels=0.00;FS=3.059;HaplotypeScore=8.6322;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.476;QD=17.78;ReadPosRankSum=1.324;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:2,79:83:99:1509,177,0 chrXV 977039 . T A 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=89;Dels=0.00;FS=2.598;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.552;QD=18.54;ReadPosRankSum=2.391;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1683,182,0 chrXV 977130 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.63;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1798,207,0 chrXV 977155 . T C 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.688;QD=22.10;ReadPosRankSum=1.685;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1646,186,0 chrXV 977302 . T C 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=170;Dels=0.00;FS=2.526;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.435;QD=23.13;ReadPosRankSum=2.959;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3932,441,0 chrXV 977533 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=20.1632;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.09;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4049,444,0 chrXV 977581 . T A 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=3.059;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.837;QD=22.31;ReadPosRankSum=1.635;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3972,441,0 chrXV 977599 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.95;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3863,429,0 chrXV 977636 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.5455;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.84;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3516,387,0 chrXV 977689 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3837,429,0 chrXV 977770 . T C 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.0734;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.487;QD=21.88;ReadPosRankSum=1.714;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4201,492,0 chrXV 977995 . A G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.441;QD=20.74;ReadPosRankSum=1.684;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3041,348,0 chrXV 978288 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=18.56;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1722,189,0 chrXV 978334 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.24;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1879,207,0 chrXV 978361 . T G 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.509;QD=22.58;ReadPosRankSum=1.664;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2359,270,0 chrXV 978537 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=18.5558;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.69;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4107,471,0 chrXV 978614 . T G 3618.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.66;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3618,420,0 chrXV 978665 . G A 4141.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.63;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4141,471,0 chrXV 978755 . C T 5843.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=7.4550;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.65;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5843,642,0 chrXV 978778 . A C 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.680;QD=21.59;ReadPosRankSum=1.700;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4620,525,0 chrXV 978831 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.70;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3746,411,0 chrXV 978953 . C A 5340.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.44;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5340,588,0 chrXV 978995 . G T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.7982;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.31;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4432,504,0 chrXV 979059 . G A 5321.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.64;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5321,579,0 chrXV 979088 . T C 6640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=300;Dels=0.00;FS=2.890;HaplotypeScore=17.9642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.186;QD=22.13;ReadPosRankSum=2.425;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:2,297:300:99:6640,756,0 chrXV 979155 . G A 8858.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=20.7340;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.27;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,365:365:99:8858,961,0 chrXV 979379 . C T 5834.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.2790;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.18;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5834,654,0 chrXV 979419 . T C 4095.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.33;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4095,465,0 chrXV 979457 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.51;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3183,351,0 chrXV 979605 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=141;Dels=0.00;FS=2.800;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.406;QD=22.55;ReadPosRankSum=2.414;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3212,363,0 chrXV 979627 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.76;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3169,345,0 chrXV 979732 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.126;QD=23.90;ReadPosRankSum=1.707;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3298,384,0 chrXV 979760 . C G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=23.62;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3377,390,0 chrXV 979929 . G C 2544 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=22.12;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2577,291,0 chrXV 979973 . T A 1709 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=19.42;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1742,192,0 chrXV 979981 . A G 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-1.067;QD=18.04;ReadPosRankSum=2.390;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1512,171,0 chrXV 980009 . A T 1427 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=20.10;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1460,159,0 chrXV 980032 . G A 1365 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=20.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1398,156,0 chrXV 980465 . A G 184.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=65;Dels=0.00;FS=37.676;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.24;MQ0=12;MQRankSum=-0.289;QD=2.85;ReadPosRankSum=2.752;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:11,54:65:9:217,9,0 chrXV 980466 . C T 186.64 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=62;Dels=0.00;FS=16.902;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.29;MQ0=12;MQRankSum=-1.732;QD=3.01;ReadPosRankSum=1.237;SB=-6.425e-01 GT:AD:DP:GQ:PL 1/1:9,52:62:11:219,11,0 chrXV 980477 . T A 100.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;DP=29;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.30;MQ0=12;MQRankSum=-1.735;QD=3.46;ReadPosRankSum=-1.735;SB=-3.160e+00 GT:AD:DP:GQ:PL 0/1:9,20:29:10:130,0,10 chrXV 980586 . C T 40.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;DP=50;Dels=0.00;FS=27.482;HaplotypeScore=19.0956;MLEAC=1;MLEAF=0.500;MQ=15.84;MQ0=0;MQRankSum=4.194;QD=0.80;ReadPosRankSum=-3.327;SB=-2.116e-01 GT:AD:DP:GQ:PL 0/1:43,7:50:10:70,0,10 chrXV 980604 . C T 387 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=7.59;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:48:420,48,0 chrXV 980701 . A T 2299 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=23.22;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2332,264,0 chrXV 980913 . C A 1563 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.01;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1596,177,0 chrXV 981009 . T C 2303 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.50;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2336,261,0 chrXV 981018 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.03;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2126,231,0 chrXV 981230 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=22.54;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2129,228,0 chrXV 981233 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.53;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1983,216,0 chrXV 981273 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.14;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1966,222,0 chrXV 981291 . T G 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.141;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.189;QD=18.10;ReadPosRankSum=1.698;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1861,219,0 chrXV 981304 . A T 2066 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.06;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2099,234,0 chrXV 981367 . T A 1816 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.74;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1849,204,0 chrXV 981378 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.71;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1792,195,0 chrXV 981397 . C G 1675 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.82;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1708,192,0 chrXV 981447 . T C 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.249;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=-1.454;QD=18.22;ReadPosRankSum=1.701;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2092,240,0 chrXV 981456 . A G 2138 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.75;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2171,243,0 chrXV 981545 . T A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.111;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.046;QD=0.21;ReadPosRankSum=-2.419;SB=-6.176e+01 GT:AD:DP:GQ:PL 1/1:78,2:80:6:48,6,0 chrXV 981549 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.315;QD=0.15;ReadPosRankSum=1.565;SB=-6.618e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:6:43,6,0 chrXV 981571 . A G 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=4.141;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=1.047;QD=17.56;ReadPosRankSum=1.696;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1719,195,0 chrXV 981575 . G T 1859 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=17.87;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1892,204,0 chrXV 981860 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.49;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2215,249,0 chrXV 982089 . A G 2884 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.26;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2917,333,0 chrXV 982131 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.77;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2834,327,0 chrXV 982145 . T C 2735 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.06;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2768,315,0 chrXV 982160 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.63;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2507,291,0 chrXV 982250 . C A 3068 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.56;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3101,342,0 chrXV 982448 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.05;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2084,234,0 chrXV 982533 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.468;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.472;QD=24.86;ReadPosRankSum=0.779;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3978,447,0 chrXV 982665 . G A 5177.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.53;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:5177,567,0 chrXV 982860 . C A 5931.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=15.8224;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.99;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5931,660,0 chrXV 983290 . G A 4411.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5365;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.22;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4411,486,0 chrXV 983366 . T C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=137;Dels=0.00;FS=5.959;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.699;QD=22.79;ReadPosRankSum=2.272;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3155,351,0 chrXV 983423 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.39;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4098,456,0 chrXV 983694 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.3197;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.14;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3299,375,0 chrXV 983798 . A C 2986 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.28;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3019,339,0 chrXV 983852 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=150;Dels=0.00;FS=5.109;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.311;QD=23.33;ReadPosRankSum=1.861;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:4,145:150:99:3500,372,0 chrXV 983939 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.91;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3482,399,0 chrXV 984011 . T C 3182 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.06;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3215,372,0 chrXV 984169 . A T 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=152;Dels=0.00;FS=5.882;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.411;QD=23.51;ReadPosRankSum=2.941;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3573,393,0 chrXV 984206 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.58;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2882,315,0 chrXV 984290 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=116;Dels=0.00;FS=6.448;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.118;QD=19.66;ReadPosRankSum=2.321;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2314,267,0 chrXV 984300 . A G 2359 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.88;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2392,270,0 chrXV 984323 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.93;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2245,246,0 chrXV 984651 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.68;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2301,255,0 chrXV 984804 . T G 818 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.5540;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=14.35;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:851,99,0 chrXV 984859 . T C 1488 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.38;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1521,174,0 chrXV 984910 . T A 1188 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.80;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1221,135,0 chrXV 984992 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.64;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2262,249,0 chrXV 985000 . T C 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.777;QD=19.91;ReadPosRankSum=2.402;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2104,240,0 chrXV 985136 . G C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.27;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3999,459,0 chrXV 985158 . C T 4037.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.99;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4037,441,0 chrXV 985377 . A G 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=231;Dels=0.00;FS=2.978;HaplotypeScore=15.9663;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.409;QD=20.15;ReadPosRankSum=2.386;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4655,525,0 chrXV 985518 . A G 4136.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.2343;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4136,477,0 chrXV 985891 . G A 4322.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4322,474,0 chrXV 985932 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=157;Dels=0.00;FS=8.358;HaplotypeScore=13.1049;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.696;QD=21.74;ReadPosRankSum=3.403;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3413,387,0 chrXV 986343 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=175;Dels=0.00;FS=3.035;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.119;QD=21.95;ReadPosRankSum=2.365;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3841,447,0 chrXV 986501 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.77;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3621,399,0 chrXV 986764 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=25.00;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2208,240,0 chrXV 986792 . T C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.527;QD=22.05;ReadPosRankSum=1.672;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2569,294,0 chrXV 986832 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.42;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3141,342,0 chrXV 986838 . A G 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=154;Dels=0.00;FS=4.260;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.934;QD=18.59;ReadPosRankSum=1.641;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2896,327,0 chrXV 986894 . A C 3415.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.85;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3415,396,0 chrXV 986977 . C T 4484.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.57;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4484,501,0 chrXV 986991 . A G 4700.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.4546;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.83;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4700,534,0 chrXV 987247 . A G 6088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=309;Dels=0.00;FS=2.860;HaplotypeScore=25.0577;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.640;QD=19.70;ReadPosRankSum=2.433;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:2,304:309:99:6088,711,0 chrXV 987667 . G A 3584.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.1782;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.67;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3584,405,0 chrXV 988081 . G A 5302.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.8697;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.15;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5302,576,0 chrXV 988671 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=19.2103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.43;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:3194,357,0 chrXV 988871 . G C 2678 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.84;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:2711,315,0 chrXV 988993 . C T 4875.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=24.13;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4875,540,0 chrXV 989056 . G C 4027.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.87;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4027,453,0 chrXV 989061 . T C 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.606;QD=19.43;ReadPosRankSum=1.715;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3886,441,0 chrXV 989204 . G A 4629.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.94;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4629,510,0 chrXV 989211 . T C 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=4.011;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.681;QD=21.83;ReadPosRankSum=1.715;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4475,507,0 chrXV 989682 . T G 1674 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.40;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1707,198,0 chrXV 989690 . A G 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=86;Dels=0.00;FS=5.757;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.281;QD=16.97;ReadPosRankSum=2.916;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:4,80:86:99:1492,168,0 chrXV 989730 . G A 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.496;HaplotypeScore=12.7386;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=1.447;QD=10.88;ReadPosRankSum=1.691;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:969,108,0 chrXV 991111 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.33;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3003,330,0 chrXV 991150 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.03;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3677,405,0 chrXV 991429 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.59;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3271,363,0 chrXV 991545 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2570,291,0 chrXV 991667 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.91;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3467,387,0 chrXV 992008 . T C 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=179;Dels=0.00;FS=3.286;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.087;QD=22.56;ReadPosRankSum=1.655;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4039,468,0 chrXV 992589 . A T 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.842;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.598;QD=25.34;ReadPosRankSum=1.710;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3928,423,0 chrXV 993116 . C G 2172 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2205,252,0 chrXV 993617 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.21;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2072,222,0 chrXV 993623 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.90;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2020,222,0 chrXV 994005 . T A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.44;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3658,402,0 chrXV 994048 . G T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.3461;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.68;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3557,411,0 chrXV 994342 . T C 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=109;Dels=0.00;FS=6.473;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.079;QD=20.46;ReadPosRankSum=2.405;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2263,258,0 chrXV 994385 . T C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=117;Dels=0.00;FS=2.976;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.326;QD=22.32;ReadPosRankSum=2.408;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2645,300,0 chrXV 994833 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3583,414,0 chrXV 995303 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.58;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3240,363,0 chrXV 995489 . G A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.2157;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.12;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4161,471,0 chrXV 995623 . A G 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=212;Dels=0.00;FS=6.080;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.786;QD=22.99;ReadPosRankSum=2.948;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:3,208:212:99:4874,546,0 chrXV 995783 . A C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=153;Dels=0.00;FS=2.783;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.236;QD=22.03;ReadPosRankSum=2.319;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3370,387,0 chrXV 996329 . C T 4722.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.49;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4722,525,0 chrXV 996462 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3948,456,0 chrXV 996702 . A T 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.526;QD=19.68;ReadPosRankSum=1.595;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2021,225,0 chrXV 996896 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.333;QD=23.26;ReadPosRankSum=1.682;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3267,363,0 chrXV 997902 . G C 2261 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.00;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2294,270,0 chrXV 999293 . A G 5817.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.1958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5817,663,0 chrXV 1000014 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.41;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3979,438,0 chrXV 1000015 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=197;Dels=0.00;FS=9.436;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.128;QD=19.09;ReadPosRankSum=2.924;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:3761,441,0 chrXV 1000082 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.7463;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.501;QD=19.98;ReadPosRankSum=1.711;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3356,393,0 chrXV 1000334 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6007;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.48;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4182,471,0 chrXV 1000780 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.94;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2672,303,0 chrXV 1000921 . A C 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.933;QD=16.76;ReadPosRankSum=1.688;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1340,150,0 chrXV 1000954 . A G 740 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=10.4267;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=12.98;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:90:773,90,0 chrXV 1001053 . A C 1513 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.02;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1546,177,0 chrXV 1001210 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3681,402,0 chrXV 1001411 . A C 3939.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3939,444,0 chrXV 1002240 . C A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.2208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.17;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3336,360,0 chrXV 1002519 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.87;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3231,354,0 chrXV 1002614 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.591;QD=23.27;ReadPosRankSum=-1.685;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3420,378,0 chrXV 1003809 . C A 1581 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.80;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1614,177,0 chrXV 1004045 . C A 2323 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.81;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2356,255,0 chrXV 1004168 . A T 2454 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2487,273,0 chrXV 1004303 . T A 607 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.34;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:640,72,0 chrXV 1004312 . A C 669 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.11;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:702,81,0 chrXV 1004474 . T C 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.091;QD=21.69;ReadPosRankSum=1.668;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1204,138,0 chrXV 1004479 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.7171;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.16;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1252,141,0 chrXV 1004499 . T C 996 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.33;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1029,117,0 chrXV 1004534 . T C 511 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=15.03;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:63:544,63,0 chrXV 1004868 . A T 1306 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.52;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1339,150,0 chrXV 1005814 . C A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.40;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3416,378,0 chrXV 1006324 . T C 2378 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2411,282,0 chrXV 1006391 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=128;Dels=0.00;FS=2.975;HaplotypeScore=12.2850;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.185;QD=20.02;ReadPosRankSum=2.352;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2595,294,0 chrXV 1007049 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1901,216,0 chrXV 1007685 . G C 2727 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.82;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2760,315,0 chrXV 1008443 . C T 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.293;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.718;QD=23.19;ReadPosRankSum=-0.313;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4778,497,0 chrXV 1009095 . A G 1045 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1078,126,0 chrXV 1009151 . C T 103.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.21;SB=-5.230e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:136,15,0 chrXV 1009862 . T C 5727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=248;Dels=0.00;FS=2.687;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.015;QD=23.09;ReadPosRankSum=2.410;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,244:248:99:5727,651,0 chrXV 1009919 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=21.23;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4225,462,0 chrXV 1009927 . G T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=22.13;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4316,471,0 chrXV 1009965 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=198;Dels=0.00;FS=3.031;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.545;QD=19.63;ReadPosRankSum=2.399;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:3886,441,0 chrXV 1009993 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.37;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4079,456,0 chrXV 1010000 . A C 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.030;QD=18.56;ReadPosRankSum=1.702;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:4342,504,0 chrXV 1010114 . G A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.58;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4240,486,0 chrXV 1010122 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=196;Dels=0.00;FS=9.653;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.560;QD=19.35;ReadPosRankSum=2.943;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:3,191:196:99:3792,450,0 chrXV 1010235 . T C 5572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=248;Dels=0.00;FS=3.025;HaplotypeScore=21.4111;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.384;QD=22.47;ReadPosRankSum=2.380;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:2,244:248:99:5572,642,0 chrXV 1010331 . A G 6003.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=24.1149;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.07;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,265:272:99:6003,699,0 chrXV 1010424 . A G 4967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.684;DP=247;Dels=0.00;FS=12.202;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.477;QD=20.11;ReadPosRankSum=3.639;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:5,242:247:99:4967,570,0 chrXV 1010523 . A G 5377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=270;Dels=0.00;FS=2.570;HaplotypeScore=18.7591;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.167;QD=19.91;ReadPosRankSum=2.855;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:3,267:270:99:5377,618,0 chrXV 1010592 . G A 5234.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.8102;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.90;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5234,585,0 chrXV 1010673 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4821,537,0 chrXV 1011684 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.15;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2802,303,0 chrXV 1011803 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.9635;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3368,366,0 chrXV 1013810 . A T 2983 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3016,327,0 chrXV 1014090 . A G 4000.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.99;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4000,459,0 chrXV 1015192 . A C 1685 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.88;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1718,195,0 chrXV 1015203 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.92;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1644,180,0 chrXV 1015397 . T C 2980 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.07;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3013,342,0 chrXV 1015648 . A G 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=180;Dels=0.00;FS=3.528;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.693;QD=21.56;ReadPosRankSum=1.693;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3881,441,0 chrXV 1015982 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.24;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2768,306,0 chrXV 1015988 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=2.942;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-1.870;QD=21.33;ReadPosRankSum=2.390;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2656,297,0 chrXV 1016037 . C G 1975 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.29;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2008,228,0 chrXV 1016156 . A G 2559 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.8819;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.15;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2592,297,0 chrXV 1016189 . A T 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.226;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.541;QD=23.99;ReadPosRankSum=1.705;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3080,342,0 chrXV 1016360 . A G 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.212;QD=22.91;ReadPosRankSum=2.268;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3437,376,0 chrXV 1016429 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.549;QD=21.54;ReadPosRankSum=1.712;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3684,423,0 chrXV 1016534 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.95;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3293,372,0 chrXV 1017032 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.40;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3079,342,0 chrXV 1017296 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.91;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3079,354,0 chrXV 1017566 . G C 2734 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.71;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2767,312,0 chrXV 1017579 . A T 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.823;QD=20.30;ReadPosRankSum=1.704;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2510,276,0 chrXV 1017599 . A C 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=110;Dels=0.00;FS=3.010;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.354;QD=18.48;ReadPosRankSum=1.701;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2066,234,0 chrXV 1017967 . G A 5026.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.05;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5026,555,0 chrXV 1018000 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=17.2867;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.35;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4761,528,0 chrXV 1018270 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6855;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.71;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:4104,447,0 chrXV 1018471 . A G 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=193;Dels=0.00;FS=6.607;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.096;QD=23.02;ReadPosRankSum=2.322;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4443,510,0 chrXV 1018594 . T C 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=195;Dels=0.00;FS=6.087;HaplotypeScore=15.2457;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.171;QD=20.77;ReadPosRankSum=2.881;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4050,465,0 chrXV 1018791 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.72;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3431,384,0 chrXV 1018794 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.16;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3211,369,0 chrXV 1019036 . C G 2757 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=19.42;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2790,321,0 chrXV 1019095 . A G 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.578;HaplotypeScore=105.6380;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;MQRankSum=-1.643;QD=13.62;ReadPosRankSum=1.687;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:2157,246,0 chrXV 1019282 . A C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=146;Dels=0.00;FS=2.509;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;MQRankSum=-0.174;QD=21.08;ReadPosRankSum=2.924;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3111,348,0 chrXV 1019356 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.07;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2615,297,0 chrXV 1019470 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.406;QD=22.51;ReadPosRankSum=1.647;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1856,213,0 chrXV 1019618 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=13.84;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1597,177,0 chrXV 1019650 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=14.98;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1486,168,0 chrXV 1019659 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=15.11;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1544,168,0 chrXV 1019789 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=22.04;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1179,132,0 chrXV 1019800 . G C 1029 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=20.58;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1062,129,0 chrXV 1019801 . T G 1091 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=21.39;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1124,132,0 chrXV 1019806 . C T 1194 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=22.53;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1227,135,0 chrXV 1019888 . G A 1127 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.67;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1160,126,0 chrXV 1019912 . A C 870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=1.022;QD=22.31;ReadPosRankSum=1.644;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:99:903,102,0 chrXV 1019988 . C T 460 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=16.43;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:493,57,0 chrXV 1020132 . A G 2395 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.48;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2428,276,0 chrXV 1020191 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.658;QD=21.26;ReadPosRankSum=1.663;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2180,246,0 chrXV 1020208 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.73;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2293,252,0 chrXV 1020336 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=183;Dels=0.00;FS=3.132;HaplotypeScore=15.5831;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.215;QD=21.98;ReadPosRankSum=1.713;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:4022,462,0 chrXV 1020414 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=25.08;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4490,489,0 chrXV 1020508 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.51;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4192,453,0 chrXV 1020567 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.201;QD=20.81;ReadPosRankSum=1.712;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,175:180:99:3745,435,0 chrXV 1020579 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.87;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3924,453,0 chrXV 1020660 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3565,393,0 chrXV 1020710 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.899;QD=22.73;ReadPosRankSum=1.688;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3591,423,0 chrXV 1020807 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.32;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2482,282,0 chrXV 1020933 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2923;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.32;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3002,327,0 chrXV 1021460 . A G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.134;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.473;QD=21.40;ReadPosRankSum=1.667;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2323,267,0 chrXV 1021550 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.65;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3601,393,0 chrXV 1021555 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.23;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3670,396,0 chrXV 1021635 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.995;QD=22.36;ReadPosRankSum=1.683;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3208,366,0 chrXV 1021923 . G T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2647;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.67;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3582,402,0 chrXV 1022023 . G C 2553 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.9366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.42;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,120:125:99:2586,294,0 chrXV 1022325 . G A 2918 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2951,327,0 chrXV 1022391 . A G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.089;QD=20.49;ReadPosRankSum=1.707;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2902,327,0 chrXV 1022673 . A T 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=106;Dels=0.00;FS=9.931;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-1.124;QD=19.48;ReadPosRankSum=2.896;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2098,237,0 chrXV 1022685 . T C 2024 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.09;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2057,234,0 chrXV 1022713 . C G 2199 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.81;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2232,252,0 chrXV 1022736 . T C 1673 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=16.24;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1706,195,0 chrXV 1022757 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.34;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2160,240,0 chrXV 1023174 . T C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=13.3839;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.510;QD=22.29;ReadPosRankSum=1.704;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2908,324,0 chrXV 1023427 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.32;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3247,366,0 chrXV 1023697 . T C 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=154;Dels=0.00;FS=8.723;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.234;QD=23.17;ReadPosRankSum=2.417;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3568,402,0 chrXV 1023785 . C G 3183 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3216,366,0 chrXV 1023874 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.69;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2552,282,0 chrXV 1024013 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.61;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3279,375,0 chrXV 1024047 . G T 2822 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.13;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2855,321,0 chrXV 1024097 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=25.16;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3497,381,0 chrXV 1024262 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.775;QD=21.78;ReadPosRankSum=1.699;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2320,267,0 chrXV 1024298 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.25;MQ0=0;QD=19.95;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1669,183,0 chrXV 1024308 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=19.41;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1974,219,0 chrXV 1024334 . A G 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;MQRankSum=-1.001;QD=17.28;ReadPosRankSum=1.637;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1917,219,0 chrXV 1024343 . T C 1657 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=5.119;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;MQRankSum=-1.133;QD=15.78;ReadPosRankSum=1.699;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1690,201,0 chrXV 1024346 . C T 1696 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=16.63;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1729,189,0 chrXV 1024352 . T C 1803 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=4.607;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;MQRankSum=-0.466;QD=17.34;ReadPosRankSum=1.666;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1836,204,0 chrXV 1024421 . T G 1931 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.72;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1964,219,0 chrXV 1024543 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=1.687;QD=21.63;ReadPosRankSum=1.687;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1677,189,0 chrXV 1024766 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=7.389;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.293;QD=24.04;ReadPosRankSum=2.401;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2461,279,0 chrXV 1025192 . G T 2573 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.42;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2606,294,0 chrXV 1025234 . A G 2742 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.76;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2775,327,0 chrXV 1025392 . T G 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.309;QD=22.33;ReadPosRankSum=1.705;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2913,339,0 chrXV 1025498 . A G 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=119;Dels=0.00;FS=2.681;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.444;QD=23.71;ReadPosRankSum=2.408;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2855,321,0 chrXV 1025575 . T C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=102;Dels=0.00;FS=7.562;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.195;QD=22.02;ReadPosRankSum=2.257;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2279,258,0 chrXV 1025626 . C G 1773 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.27;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1806,204,0 chrXV 1025628 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.38;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1779,204,0 chrXV 1025760 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=18.2011;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.12;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3399,369,0 chrXV 1025986 . G A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.13;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4368,471,0 chrXV 1026039 . C T 4721.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.48;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4721,513,0 chrXV 1026427 . A C 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=135;Dels=0.00;FS=4.249;HaplotypeScore=11.0121;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.534;QD=22.58;ReadPosRankSum=1.706;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3081,351,0 chrXV 1026462 . A G 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=128;Dels=0.00;FS=3.330;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.023;QD=22.23;ReadPosRankSum=1.678;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2878,336,0 chrXV 1026675 . C A 2907 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.53;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2940,321,0 chrXV 1026836 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3400,381,0 chrXV 1026977 . G C 4757.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,203:208:99:4757,540,0 chrXV 1027094 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3051,348,0 chrXV 1027719 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.32;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3332,366,0 chrXV 1028006 . T C 1024 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1057,120,0 chrXV 1028091 . A T 1013 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1046,114,0 chrXV 1028949 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1957,222,0 chrXV 1028985 . C T 1830 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1863,201,0 chrXV 1029077 . A C 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=61.0768;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.231;QD=19.36;ReadPosRankSum=1.690;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1640,192,0 chrXV 1029127 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.1783;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.19;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2012,228,0 chrXV 1029281 . C G 2075 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.55;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2108,246,0 chrXV 1029990 . C T 5165.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.6590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5165,573,0 chrXV 1030149 . A T 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.6433;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.039;QD=20.76;ReadPosRankSum=1.695;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3841,420,0 chrXV 1030315 . C A 2703 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8987;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.52;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2736,306,0 chrXV 1030410 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.23;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2420,264,0 chrXV 1030847 . A G 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.3886;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.368;QD=15.54;ReadPosRankSum=1.694;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:2862,327,0 chrXV 1031115 . C A 2412 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.75;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2445,264,0 chrXV 1031126 . T C 2255 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.32;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2288,267,0 chrXV 1031198 . T C 1161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.064;DP=64;Dels=0.00;FS=3.075;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.444;QD=18.14;ReadPosRankSum=2.373;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1194,138,0 chrXV 1031303 . A G 1777 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.78;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1810,207,0 chrXV 1031598 . G T 3045 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5336;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.23;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3078,339,0 chrXV 1031632 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.9766;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.04;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3636,399,0 chrXV 1031678 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.4180;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.354;QD=21.07;ReadPosRankSum=1.714;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4088,468,0 chrXV 1031754 . A G 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=205;Dels=0.00;FS=4.210;HaplotypeScore=14.0425;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.691;QD=21.94;ReadPosRankSum=1.698;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4498,510,0 chrXV 1032017 . T C 5116.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.2946;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.41;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5116,597,0 chrXV 1032089 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.0132;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.80;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4305,492,0 chrXV 1032162 . T C 4665.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.90;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4665,528,0 chrXV 1032239 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=156;Dels=0.00;FS=7.209;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.229;QD=20.01;ReadPosRankSum=2.321;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:3154,357,0 chrXV 1032449 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=155;Dels=0.00;FS=6.965;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.294;QD=22.57;ReadPosRankSum=2.385;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,149:155:99:3498,399,0 chrXV 1032536 . C A 6736.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.1355;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.99;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:6736,736,0 chrXV 1032776 . T C 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=254;Dels=0.00;FS=5.626;HaplotypeScore=16.1053;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.553;QD=20.23;ReadPosRankSum=1.705;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:5138,594,0 chrXV 1032899 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.63;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3462,399,0 chrXV 1032998 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5396;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.61;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3470,387,0 chrXV 1033361 . A T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.22;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3260,363,0 chrXV 1033439 . T G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.134;QD=21.53;ReadPosRankSum=1.707;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3026,351,0 chrXV 1033446 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.17;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3304,363,0 chrXV 1033501 . C G 2886 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.24;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2919,330,0 chrXV 1033684 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.67;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4392,489,0 chrXV 1034311 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.14;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3404,384,0 chrXV 1034376 . T A 2359 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.69;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2392,261,0 chrXV 1034400 . T C 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=94;Dels=0.00;FS=4.723;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.837;QD=20.21;ReadPosRankSum=1.693;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,88:94:99:1933,222,0 chrXV 1034515 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.32;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1479,162,0 chrXV 1034596 . G T 1417 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.14;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1450,162,0 chrXV 1034658 . T G 1523 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.73;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1556,177,0 chrXV 1034832 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=21.57;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1802,207,0 chrXV 1035092 . G T 2844 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2877,315,0 chrXV 1035181 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.56;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3346,375,0 chrXV 1035608 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.79;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3640,405,0 chrXV 1035692 . G T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3390;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.69;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3791,423,0 chrXV 1035815 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4056,444,0 chrXV 1036058 . T C 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=18.2310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.773;QD=23.29;ReadPosRankSum=2.372;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4426,507,0 chrXV 1036151 . T C 1001.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.432;DP=173;Dels=0.00;FS=12.898;HaplotypeScore=216.0493;MLEAC=1;MLEAF=0.500;MQ=53.80;MQ0=0;MQRankSum=1.090;QD=5.79;ReadPosRankSum=-9.448;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:121,51:173:99:1031,0,227 chrXV 1036154 . T C 702.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.663;DP=164;Dels=0.00;FS=12.801;HaplotypeScore=7.8421;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=0.394;QD=4.28;ReadPosRankSum=-8.540;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:125,39:164:99:732,0,292 chrXV 1036157 . T C 757 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.776;DP=150;Dels=0.00;FS=5.269;HaplotypeScore=6.6978;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.227;QD=5.05;ReadPosRankSum=2.397;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:4,146:150:50:790,50,0 chrXV 1036160 . T C 445.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5556;MLEAC=1;MLEAF=0.500;MQ=52.54;MQ0=0;MQRankSum=0.189;QD=2.93;ReadPosRankSum=5.923;SB=-1.383e+03 GT:AD:DP:GQ:PL 0/1:16,136:152:99:475,0,168 chrXV 1036163 . T C 568.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;DP=153;Dels=0.00;FS=6.933;HaplotypeScore=5.2895;MLEAC=1;MLEAF=0.500;MQ=53.27;MQ0=0;MQRankSum=0.244;QD=3.71;ReadPosRankSum=5.265;SB=-1.518e+03 GT:AD:DP:GQ:PL 0/1:11,142:153:83:598,0,83 chrXV 1036343 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=0.199;QD=22.63;ReadPosRankSum=1.672;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3937,456,0 chrXV 1036412 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4300;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.80;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3693,405,0 chrXV 1036548 . T C 2291 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=13.64;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2324,270,0 chrXV 1036781 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=178;Dels=0.00;FS=3.085;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.497;QD=21.70;ReadPosRankSum=1.673;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3862,453,0 chrXV 1036829 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.11;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4026,441,0 chrXV 1037142 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=3.300;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.117;QD=21.86;ReadPosRankSum=1.704;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2744,312,0 chrXV 1037163 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.44;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2608,288,0 chrXV 1037336 . A C 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.535;QD=20.56;ReadPosRankSum=1.689;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1698,189,0 chrXV 1037415 . T A 716 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:84:749,84,0 chrXV 1037505 . C T 889 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=22.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:922,105,0 chrXV 1037514 . A C 735 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;MQRankSum=-1.436;QD=21.00;ReadPosRankSum=1.634;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,34:35:87:768,87,0 chrXV 1037520 . T C 601 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.72;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:72:634,72,0 chrXV 1037540 . A T 75.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.731;QD=15.10;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:12:108,12,0 chrXV 1037552 . G T 17.96 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=0;QD=2.00;SB=12.87 GT:AD:DP:GQ:PL 1/1:0,5:9:6:49,6,0 chrXV 1037595 . G C 1371 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1404,165,0 chrXV 1037757 . A G 2531 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.40;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2564,300,0 chrXV 1038438 . A T 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.596;QD=23.07;ReadPosRankSum=1.694;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4221,462,0 chrXV 1038535 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.98;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3524,390,0 chrXV 1038675 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=169;Dels=0.00;FS=3.542;HaplotypeScore=20.9954;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.745;QD=20.66;ReadPosRankSum=1.669;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,164:169:99:3491,396,0 chrXV 1038711 . T C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.921;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.147;QD=19.21;ReadPosRankSum=1.709;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2896,330,0 chrXV 1038714 . A G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=151;Dels=0.00;FS=2.920;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.252;QD=19.85;ReadPosRankSum=2.385;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3031,348,0 chrXV 1038822 . G T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3399,375,0 chrXV 1038960 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=176;Dels=0.00;FS=7.750;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.860;QD=22.45;ReadPosRankSum=2.422;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3952,450,0 chrXV 1039293 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8081;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.42;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3127,357,0 chrXV 1039487 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.57;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3311,360,0 chrXV 1039544 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.71;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3031,330,0 chrXV 1039586 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.947;QD=20.62;ReadPosRankSum=1.678;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2672,309,0 chrXV 1039607 . A T 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.4263;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.588;QD=20.95;ReadPosRankSum=1.674;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2547,282,0 chrXV 1039786 . A G 2827 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.09;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2860,324,0 chrXV 1039824 . C A 2320 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.89;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2353,255,0 chrXV 1040442 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.68;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3810,414,0 chrXV 1040775 . T C 2846 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.04;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2879,330,0 chrXV 1041126 . A T 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=3.397;HaplotypeScore=9.4270;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.179;QD=21.48;ReadPosRankSum=1.585;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4060,465,0 chrXV 1041177 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.12;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4447,510,0 chrXV 1041417 . G C 2324 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=18.89;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2357,267,0 chrXV 1041432 . T A 1833 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.52;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1866,210,0 chrXV 1041487 . T C 855 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:888,99,0 chrXV 1041524 . T C 405 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:438,51,0 chrXV 1041571 . G A 751 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.03;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:87:784,87,0 chrXV 1041617 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.08;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:93:850,93,0 chrXV 1041635 . A T 848 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.72;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:881,99,0 chrXV 1042440 . A G 5227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=260;Dels=0.00;FS=2.791;HaplotypeScore=16.0579;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.033;QD=20.10;ReadPosRankSum=2.374;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:2,257:260:99:5227,594,0 chrXV 1043118 . T C 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=92;Dels=0.00;FS=9.168;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.123;QD=18.43;ReadPosRankSum=2.396;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:1729,198,0 chrXV 1043121 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.99;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1837,201,0 chrXV 1043151 . A T 1726 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.80;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1759,198,0 chrXV 1043361 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.31;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2783,309,0 chrXV 1043801 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.3210;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.32;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3572,417,0 chrXV 1043807 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.48;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3838,423,0 chrXV 1044044 . G C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.79;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:4164,471,0 chrXV 1044139 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5420;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.16;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2714,306,0 chrXV 1044165 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6343;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.75;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2813,318,0 chrXV 1044215 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.82;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3879,438,0 chrXV 1044349 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.0065;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.35;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3806,414,0 chrXV 1044465 . T A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8368;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.89;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3480,393,0 chrXV 1044504 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.2494;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.82;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2848,312,0 chrXV 1044558 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=4.175;HaplotypeScore=10.3232;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.764;QD=22.02;ReadPosRankSum=1.681;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3028,351,0 chrXV 1044705 . T C 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=100;Dels=0.00;FS=3.026;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.480;QD=20.97;ReadPosRankSum=2.401;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2130,246,0 chrXV 1044724 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.81;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2367,258,0 chrXV 1044907 . G C 2455 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.94;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2488,291,0 chrXV 1044950 . A G 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.066;QD=19.52;ReadPosRankSum=1.699;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2063,234,0 chrXV 1044959 . G T 2163 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=20.21;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2196,246,0 chrXV 1045014 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.34;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2413,267,0 chrXV 1045029 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.33;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2657,288,0 chrXV 1045032 . A G 2413 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.85;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2446,288,0 chrXV 1045111 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.39;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3291,378,0 chrXV 1045267 . T C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.253;DP=165;Dels=0.00;FS=2.310;HaplotypeScore=38.2724;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;MQRankSum=3.047;QD=0.20;ReadPosRankSum=0.939;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:39,125:165:9:65,9,0 chrXV 1045298 . C G 3771.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=21.07;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,171:179:99:3771,438,0 chrXV 1045378 . T C 5003.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=24.05;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5003,573,0 chrXV 1045466 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=16.22;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2450,282,0 chrXV 1045477 . A G 2300 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=139.1772;MLEAC=2;MLEAF=1.00;MQ=37.12;MQ0=0;QD=15.33;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2333,276,0 chrXV 1045483 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=15.22;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2301,267,0 chrXV 1045508 . T G 1565 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=11.95;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1598,183,0 chrXV 1045603 . A T 231 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;QD=2.41;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:30:264,30,0 chrXV 1045615 . G A 599 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=5.30;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:69:632,69,0 chrXV 1045681 . A G 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=126;Dels=0.00;FS=5.763;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=0.089;QD=18.16;ReadPosRankSum=2.944;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2321,264,0 chrXV 1045703 . A C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=129;Dels=0.00;FS=3.023;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;MQRankSum=0.124;QD=20.52;ReadPosRankSum=2.412;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2680,300,0 chrXV 1045752 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.501;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=-0.490;QD=21.40;ReadPosRankSum=1.689;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3445,402,0 chrXV 1045799 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0255;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=23.54;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4072,441,0 chrXV 1045872 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=25.39;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3377,366,0 chrXV 1046255 . C G 2774 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2807,333,0 chrXV 1046363 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=148;Dels=0.00;FS=14.682;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.101;QD=23.72;ReadPosRankSum=3.375;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:4,143:148:99:3511,396,0 chrXV 1046564 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.83;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3774,426,0 chrXV 1046807 . T A 1467 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.90;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1500,168,0 chrXV 1047359 . C A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.30;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3390,381,0 chrXV 1047398 . T A 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=4.564;HaplotypeScore=7.4906;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.594;QD=21.03;ReadPosRankSum=1.272;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3040,333,0 chrXV 1047512 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.62;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3329,378,0 chrXV 1047566 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.92;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2522,291,0 chrXV 1047599 . G A 2296 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.1761;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.87;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2329,249,0 chrXV 1047626 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.67;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2980,327,0 chrXV 1047731 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.07;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3645,396,0 chrXV 1047746 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.346;QD=21.48;ReadPosRankSum=1.708;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3147,354,0 chrXV 1047779 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.09;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2669,294,0 chrXV 1047912 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.1651;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.57;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3183,351,0 chrXV 1047968 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.45;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3282,372,0 chrXV 1048033 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.919;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=1.635;QD=22.40;ReadPosRankSum=1.659;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3236,369,0 chrXV 1048050 . C T 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.937;QD=20.26;ReadPosRankSum=0.808;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2768,306,0 chrXV 1048059 . T C 2762 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.87;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2795,318,0 chrXV 1048103 . G A 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;DP=137;Dels=0.00;FS=3.835;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.039;QD=15.80;ReadPosRankSum=1.706;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:2198,246,0 chrXV 1048151 . A G 3148 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.99;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3181,378,0 chrXV 1048158 . T G 3290.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-0.528;QD=18.18;ReadPosRankSum=2.422;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3290,375,0 chrXV 1048159 . T C 3128 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=17.47;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3161,369,0 chrXV 1048196 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=18.82;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3369,390,0 chrXV 1048227 . C A 2777 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=18.51;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2810,309,0 chrXV 1048427 . T C 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=81;Dels=0.00;FS=4.505;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-1.118;QD=11.94;ReadPosRankSum=1.688;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1000,117,0 chrXV 1048437 . C T 1163 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=14.18;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1196,141,0 chrXV 1048488 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=20.8953;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.35;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1987,216,0 chrXV 1048836 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=3.328;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.509;QD=21.94;ReadPosRankSum=1.712;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3730,432,0 chrXV 1048841 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.21;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3924,438,0 chrXV 1048875 . G C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.2129;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.65;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3438,387,0 chrXV 1048886 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=179;Dels=0.00;FS=6.025;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.062;QD=19.94;ReadPosRankSum=2.860;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3569,402,0 chrXV 1048953 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=173;Dels=0.00;FS=7.767;HaplotypeScore=12.0687;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.929;QD=20.11;ReadPosRankSum=3.765;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:5,168:173:99:3479,393,0 chrXV 1048990 . T C 4846.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.4591;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.64;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4846,558,0 chrXV 1049047 . G C 5019.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.51;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5019,582,0 chrXV 1049114 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.9254;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.89;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3990,444,0 chrXV 1049465 . A T 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.372;QD=22.21;ReadPosRankSum=2.267;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3909,429,0 chrXV 1049580 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=167;Dels=0.00;FS=13.181;HaplotypeScore=13.6981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.036;QD=21.68;ReadPosRankSum=2.958;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3621,414,0 chrXV 1049756 . T C 4997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=233;Dels=0.00;FS=13.100;HaplotypeScore=27.4944;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.247;QD=21.45;ReadPosRankSum=3.385;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:4,226:233:99:4997,573,0 chrXV 1049902 . T C 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=225;Dels=0.00;FS=2.898;HaplotypeScore=9.4779;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.888;QD=21.22;ReadPosRankSum=2.372;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:4774,546,0 chrXV 1050066 . T G 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=235;Dels=0.00;FS=3.321;HaplotypeScore=19.8916;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.538;QD=19.37;ReadPosRankSum=1.702;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,231:235:99:4553,534,0 chrXV 1050150 . G C 4475.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.0279;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.91;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4475,513,0 chrXV 1050311 . G T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.40;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3610,405,0 chrXV 1050335 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.1035;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.20;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3455,381,0 chrXV 1050536 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.39;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4098,456,0 chrXV 1050809 . T C 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.689;QD=18.74;ReadPosRankSum=1.638;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:4873,552,0 chrXV 1050821 . A G 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=255;Dels=0.00;FS=3.027;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.217;QD=18.36;ReadPosRankSum=2.392;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:4682,546,0 chrXV 1051046 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=133;Dels=0.00;FS=16.574;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.947;QD=20.34;ReadPosRankSum=2.902;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2738,309,0 chrXV 1051096 . C G 2985 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.50;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3018,348,0 chrXV 1051162 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3302,366,0 chrXV 1051227 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.38;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3343,387,0 chrXV 1051260 . G A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.65;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4375,477,0 chrXV 1051284 . C T 5122.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.97;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5122,576,0 chrXV 1051487 . A G 5236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=259;Dels=0.00;FS=5.225;HaplotypeScore=17.0640;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.521;QD=20.22;ReadPosRankSum=3.387;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:4,255:259:99:5236,615,0 chrXV 1051607 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.51;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3984,432,0 chrXV 1051637 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4753;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.80;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3967,432,0 chrXV 1051694 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.54;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4272,477,0 chrXV 1051814 . G T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9972;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.74;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4273,480,0 chrXV 1051958 . C G 4986.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.2904;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.46;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4986,593,0 chrXV 1051994 . C T 6066.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=23.4808;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.42;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:6066,669,0 chrXV 1052051 . T A 5078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=20.6741;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.828;QD=18.60;ReadPosRankSum=1.707;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,272:273:99:5078,599,0 chrXV 1052288 . A C 7015.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=19.9291;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-3.878e+03 GT:AD:DP:GQ:PL 1/1:0,310:311:99:7015,795,0 chrXV 1052408 . G A 5067.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.13;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5067,564,0 chrXV 1052570 . C A 5773.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.36;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5773,627,0 chrXV 1052746 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.8105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4168,468,0 chrXV 1052900 . A T 2887 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2920,327,0 chrXV 1053054 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.51;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2464,273,0 chrXV 1053103 . A T 2598 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9756;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.20;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2631,291,0 chrXV 1053232 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.35;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2395,261,0 chrXV 1053290 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=23.64;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2113,240,0 chrXV 1053318 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=61.0434;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=21.97;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1681,189,0 chrXV 1053371 . C T 790 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;QD=15.80;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:823,93,0 chrXV 1053378 . T C 722 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=15.36;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:755,87,0 chrXV 1053380 . G T 759 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=15.81;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:792,87,0 chrXV 1053408 . C T 751 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=14.73;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:784,87,0 chrXV 1053414 . T A 767 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=15.98;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:800,90,0 chrXV 1053494 . T A 605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=31;Dels=0.00;FS=5.371;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=1.174;QD=19.52;ReadPosRankSum=1.398;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:69:638,69,0 chrXV 1053511 . C T 430 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=21.50;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:463,51,0 chrXV 1053584 . T A 183.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=16.64;SB=-4.802e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:24:216,24,0 chrXV 1053586 . T G 177.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=14.75;SB=-5.203e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:210,24,0 chrXV 1053595 . C T 190.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=15.84;SB=-2.704e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:223,24,0 chrXV 1053727 . T C 329 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=12.65;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:42:362,42,0 chrXV 1053732 . G A 331 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=12.26;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:42:364,42,0 chrXV 1053748 . G C 246 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=8.20;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:33:279,33,0 chrXV 1053751 . C A 268 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=8.38;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:33:301,33,0 chrXV 1053769 . C T 276 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=7.89;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:33:309,33,0 chrXV 1053770 . G A 248 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=6.70;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,35:37:33:281,33,0 chrXV 1053882 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.84;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1548,168,0 chrXV 1053942 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=20.37;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1744,189,0 chrXV 1054069 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.44;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2322,270,0 chrXV 1054123 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=21.42;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1918,222,0 chrXV 1054263 . A G 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=116;Dels=0.00;FS=15.658;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-1.596;QD=18.52;ReadPosRankSum=3.382;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:4,112:116:99:2181,243,0 chrXV 1054294 . A G 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=4.607;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.000;QD=20.35;ReadPosRankSum=1.699;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2149,246,0 chrXV 1054305 . A G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=4.728;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.115;QD=20.15;ReadPosRankSum=1.698;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2068,237,0 chrXV 1054347 . G C 1489 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.11;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1522,174,0 chrXV 1054371 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=17.12;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1300,141,0 chrXV 1054387 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=21.41;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1660,180,0 chrXV 1054416 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.34;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1890,213,0 chrXV 1054468 . C T 2556 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.48;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2589,294,0 chrXV 1054533 . T G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=1.363;QD=22.17;ReadPosRankSum=1.704;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2760,315,0 chrXV 1054570 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.60;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2487,273,0 chrXV 1054654 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.99;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1968,228,0 chrXV 1054920 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.20;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2344,249,0 chrXV 1054937 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.35;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2616,291,0 chrXV 1055015 . A G 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=3.295;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.357;QD=20.56;ReadPosRankSum=1.705;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2623,309,0 chrXV 1055030 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=20.16;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2553,291,0 chrXV 1055044 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.45;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2929,330,0 chrXV 1055076 . G C 3027 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.78;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3060,354,0 chrXV 1055157 . A G 2765 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.60;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2798,318,0 chrXV 1055169 . T A 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=124;Dels=0.00;FS=2.826;HaplotypeScore=2.6934;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=0.704;QD=21.31;ReadPosRankSum=2.410;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2676,291,0 chrXV 1055195 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.14;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3120,354,0 chrXV 1055227 . T A 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=144;Dels=0.00;FS=3.071;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-1.107;QD=20.47;ReadPosRankSum=1.684;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2981,333,0 chrXV 1055325 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.5818;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=21.81;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3021,342,0 chrXV 1055396 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.90;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2604,282,0 chrXV 1055524 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.422;QD=20.26;ReadPosRankSum=1.665;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3194,363,0 chrXV 1055525 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.022;QD=19.87;ReadPosRankSum=1.710;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3133,357,0 chrXV 1055801 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.3224;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.23;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3691,405,0 chrXV 1055838 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4637;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.547;QD=24.45;ReadPosRankSum=-0.021;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4108,453,0 chrXV 1055878 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.40;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3885,438,0 chrXV 1055920 . A G 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=176;Dels=0.00;FS=3.943;HaplotypeScore=14.9366;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.807;QD=23.22;ReadPosRankSum=1.673;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4087,468,0 chrXV 1056132 . A T 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=182;Dels=0.02;FS=5.819;HaplotypeScore=6.1226;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-1.559;QD=19.98;ReadPosRankSum=2.870;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3636,396,0 chrXV 1056133 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.228;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-0.689;QD=19.46;ReadPosRankSum=4.183;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:7,171:179:99:3483,393,0 chrXV 1056175 . A C 2782 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.8784;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=17.28;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2815,324,0 chrXV 1056183 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-1.193;QD=16.04;ReadPosRankSum=1.670;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:2727,312,0 chrXV 1056258 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.79;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3234,363,0 chrXV 1056279 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.68;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3239,360,0 chrXV 1056327 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.19;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3021,345,0 chrXV 1056358 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=151;Dels=0.00;FS=5.779;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-2.094;QD=22.87;ReadPosRankSum=2.779;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3454,390,0 chrXV 1056618 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.27;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3408,396,0 chrXV 1056819 . T C 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=197;Dels=0.00;FS=2.944;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.069;QD=21.72;ReadPosRankSum=2.412;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4278,492,0 chrXV 1056865 . G A 5285.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.2473;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.24;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5285,576,0 chrXV 1056939 . T C 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=216;Dels=0.00;FS=2.320;HaplotypeScore=10.3842;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.074;QD=19.88;ReadPosRankSum=1.302;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:4295,492,0 chrXV 1056959 . A C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.587;QD=19.90;ReadPosRankSum=1.700;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:1,214:218:99:4338,489,0 chrXV 1056993 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.1244;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.38;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4489,498,0 chrXV 1057081 . T C 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=227;Dels=0.00;FS=3.498;HaplotypeScore=9.6734;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.031;QD=22.51;ReadPosRankSum=1.671;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5109,599,0 chrXV 1057468 . A T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.13;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4248,477,0 chrXV 1057474 . G C 4254.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.65;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4254,480,0 chrXV 1057489 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.990;QD=20.16;ReadPosRankSum=1.683;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4234,483,0 chrXV 1057536 . A G 2764 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.95;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2797,318,0 chrXV 1057626 . T C 3167 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.30;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3200,360,0 chrXV 1057751 . C G 1729 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.83;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1762,198,0 chrXV 1057752 . A G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=84;Dels=0.00;FS=3.010;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=0.989;QD=20.60;ReadPosRankSum=2.328;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,79:84:99:1763,198,0 chrXV 1057774 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.21;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1751,198,0 chrXV 1057907 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.46;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1547,174,0 chrXV 1057969 . A T 896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=61;Dels=0.00;FS=3.082;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;MQRankSum=-1.195;QD=14.69;ReadPosRankSum=2.329;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:929,108,0 chrXV 1057993 . C T 717 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=13.04;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:750,84,0 chrXV 1058015 . A T 618 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=53;Dels=0.00;FS=3.819;HaplotypeScore=4.6818;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;MQRankSum=1.275;QD=11.66;ReadPosRankSum=1.602;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:69:651,69,0 chrXV 1058016 . A T 600 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=7.756;HaplotypeScore=4.6818;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;MQRankSum=-2.264;QD=11.32;ReadPosRankSum=2.357;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:69:633,69,0 chrXV 1058024 . A C 540 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=0;QD=9.64;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:66:573,66,0 chrXV 1058045 . A C 764 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=11.94;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:90:797,90,0 chrXV 1058063 . G C 878 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=12.37;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:911,102,0 chrXV 1058065 . T C 869 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=12.24;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:902,102,0 chrXV 1058190 . T C 2027 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=24.72;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2060,231,0 chrXV 1058254 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=22.54;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2062,231,0 chrXV 1058421 . T A 2996 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.19;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3029,348,0 chrXV 1058538 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=8.529;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.311;QD=24.05;ReadPosRankSum=2.354;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3752,426,0 chrXV 1058568 . A G 3900.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=23.35;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3900,450,0 chrXV 1058627 . T G 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.9471;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.250;QD=21.87;ReadPosRankSum=1.692;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3806,441,0 chrXV 1058648 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.99;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3871,426,0 chrXV 1058775 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.15;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2925,339,0 chrXV 1058776 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=20.25;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3071,339,0 chrXV 1058791 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-0.941;QD=17.77;ReadPosRankSum=1.625;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2930,339,0 chrXV 1058801 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.07;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2870,327,0 chrXV 1058868 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5464;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.17;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2317,261,0 chrXV 1058977 . G C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.01;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3659,417,0 chrXV 1059193 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=2.951;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.430;QD=21.43;ReadPosRankSum=2.419;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3515,408,0 chrXV 1059223 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.260;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.914;QD=22.12;ReadPosRankSum=1.625;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3583,408,0 chrXV 1059405 . C G 3001 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.63;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3034,342,0 chrXV 1059487 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.01;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=22.42;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4192,462,0 chrXV 1059502 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=191;Dels=0.00;FS=2.578;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-0.138;QD=21.49;ReadPosRankSum=2.963;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:3,187:191:99:4104,468,0 chrXV 1059558 . A G 4790.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.07;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4790,546,0 chrXV 1059625 . C T 5700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.9255;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.638;QD=25.79;ReadPosRankSum=1.152;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5700,613,0 chrXV 1059727 . C T 6612.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=20.04;SB=-3.926e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:6612,718,0 chrXV 1059744 . G A 6009.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=8.8924;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.20;SB=-4.001e+03 GT:AD:DP:GQ:PL 1/1:0,312:313:99:6009,678,0 chrXV 1059916 . C A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=17.17;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4224,477,0 chrXV 1059946 . C G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=20.1743;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=18.08;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,233:238:99:4303,489,0 chrXV 1059960 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=19.37;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3894,435,0 chrXV 1060063 . C T 1711 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1744,189,0 chrXV 1060135 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1274,144,0 chrXV 1060367 . T C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.635;QD=23.13;ReadPosRankSum=1.703;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2809,327,0 chrXV 1060419 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=24.42;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3614,399,0 chrXV 1060435 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=2.477;QD=22.18;ReadPosRankSum=3.397;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3749,429,0 chrXV 1060555 . G A 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.660;DP=235;Dels=0.00;FS=2.616;HaplotypeScore=367.7966;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;MQRankSum=1.272;QD=3.50;ReadPosRankSum=-11.213;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:175,59:235:96:855,96,0 chrXV 1060612 . T C 5260.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=31.0594;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=22.67;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5260,620,0 chrXV 1060654 . G A 5282.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=23.48;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5282,588,0 chrXV 1060667 . C T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=20.58;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4446,510,0 chrXV 1060720 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=15.40;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1481,168,0 chrXV 1060732 . A G 732 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;MQRankSum=-2.283;QD=12.41;ReadPosRankSum=2.367;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,57:59:87:765,87,0 chrXV 1060738 . A G 485 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;MQRankSum=-2.393;QD=11.28;ReadPosRankSum=2.336;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:2,41:43:57:518,57,0 chrXV 1060916 . C G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=1.28;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:53,6,0 chrXV 1060917 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;MQRankSum=1.123;QD=1.34;ReadPosRankSum=-0.306;SB=-1.720e+00 GT:AD:DP:GQ:PL 1/1:1,16:17:6:54,6,0 chrXV 1060919 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=1.21;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,18:18:6:53,6,0 chrXV 1060921 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;QD=1.15;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,19:19:6:53,6,0 chrXV 1060960 . A G 1845 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=17.91;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1878,216,0 chrXV 1060972 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.7245;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=19.86;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2714,303,0 chrXV 1061020 . A G 4144.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=22.64;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4144,468,0 chrXV 1061049 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;MQRankSum=-0.785;QD=22.51;ReadPosRankSum=1.709;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3399,396,0 chrXV 1061582 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=23.30;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4077,444,0 chrXV 1061596 . G A 4280.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=23.14;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4280,486,0 chrXV 1061626 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=4.091;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.264;QD=22.64;ReadPosRankSum=1.673;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4030,465,0 chrXV 1061672 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=16.5886;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.35;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3553,399,0 chrXV 1061717 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=165;Dels=0.00;FS=2.881;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.354;QD=20.86;ReadPosRankSum=2.389;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3442,393,0 chrXV 1061800 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=126.4200;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.20;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3255,357,0 chrXV 1061819 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=129.5727;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=-0.981;QD=16.38;ReadPosRankSum=1.909;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2638,300,0 chrXV 1061841 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-1.208;QD=18.10;ReadPosRankSum=1.692;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3147,360,0 chrXV 1061899 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=13.4122;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.191;QD=21.66;ReadPosRankSum=1.692;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3768,423,0 chrXV 1061951 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.76;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2641,288,0 chrXV 1062070 . A G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=2.822;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=1.818;QD=22.71;ReadPosRankSum=2.422;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3975,456,0 chrXV 1062155 . G A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=22.0171;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.67;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4734,510,0 chrXV 1062226 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.58;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5138,558,0 chrXV 1062345 . A C 5170.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.5601;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.63;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5170,594,0 chrXV 1062461 . G A 5889.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=23.65;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5889,645,0 chrXV 1062514 . G A 4987.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.13;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4987,567,0 chrXV 1062529 . G A 4837.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=21.40;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4837,537,0 chrXV 1062547 . C T 4889.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.54;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4889,561,0 chrXV 1062646 . G A 5438.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.75;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5438,627,0 chrXV 1062694 . T C 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=234;Dels=0.00;FS=6.663;HaplotypeScore=9.4669;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.423;QD=19.77;ReadPosRankSum=2.386;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:4626,531,0 chrXV 1062700 . G A 4817.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.6688;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.13;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4817,525,0 chrXV 1062786 . C T 4412.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.1468;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.95;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4412,507,0 chrXV 1062865 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.83;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3972,447,0 chrXV 1062955 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=147;Dels=0.00;FS=2.868;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-1.212;QD=22.36;ReadPosRankSum=2.314;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3287,375,0 chrXV 1063076 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=18.26;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2717,297,0 chrXV 1063177 . C T 1616 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=9.51;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:1649,183,0 chrXV 1063183 . G A 1439 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.5251;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=8.88;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:1472,162,0 chrXV 1063184 . G A 1489 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.5251;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=9.13;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:1522,165,0 chrXV 1063186 . G A 1488 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.5251;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;QD=9.07;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:1521,168,0 chrXV 1063200 . C A 1898 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7804;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=10.85;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:1931,216,0 chrXV 1063375 . A G 5769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=249;Dels=0.00;FS=6.252;HaplotypeScore=17.1179;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;MQRankSum=1.341;QD=23.17;ReadPosRankSum=2.430;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5769,651,0 chrXV 1063555 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.8464;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.96;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4173,462,0 chrXV 1063585 . A T 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.3662;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.173;QD=20.18;ReadPosRankSum=2.419;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3289,375,0 chrXV 1063605 . G C 2915 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.38;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2948,336,0 chrXV 1063818 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.41;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2444,270,0 chrXV 1063841 . A G 1950 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-1.497;QD=18.93;ReadPosRankSum=1.698;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1983,231,0 chrXV 1063845 . G T 1859 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.23;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1892,207,0 chrXV 1063847 . G A 1723 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.89;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1756,204,0 chrXV 1064011 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.17;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4351,474,0 chrXV 1064042 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.789;QD=23.60;ReadPosRankSum=1.671;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3988,453,0 chrXV 1064066 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=23.26;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3814,417,0 chrXV 1064123 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=165;Dels=0.00;FS=4.242;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.428;QD=20.18;ReadPosRankSum=1.711;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3329,393,0 chrXV 1064163 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.78;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4578,501,0 chrXV 1064229 . A G 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=188;Dels=0.00;FS=2.635;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.940;QD=21.13;ReadPosRankSum=2.410;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3972,453,0 chrXV 1064267 . T C 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=4.088;HaplotypeScore=14.2313;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.675;QD=22.14;ReadPosRankSum=1.694;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4029,462,0 chrXV 1064342 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.37;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4277,462,0 chrXV 1064466 . C G 3110 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.16;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3143,363,0 chrXV 1064500 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=152;Dels=0.00;FS=10.205;HaplotypeScore=5.4376;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.636;QD=20.76;ReadPosRankSum=2.901;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3189,372,0 chrXV 1064524 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.47;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3336,384,0 chrXV 1064587 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.86;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3776,426,0 chrXV 1064615 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.46;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3562,405,0 chrXV 1064799 . C T 3724.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=21.16;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3724,402,0 chrXV 1064803 . C T 3652.01 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=21.23;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3652,393,0 chrXV 1064807 . T C 3597.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=182;Dels=0.00;FS=3.015;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.371;QD=19.76;ReadPosRankSum=2.409;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3597,402,0 chrXV 1064990 . C A 2639 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.26;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2672,291,0 chrXV 1065166 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-2.265;QD=23.25;ReadPosRankSum=1.895;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3149,366,0 chrXV 1065443 . A G 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.369;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.275;QD=20.91;ReadPosRankSum=1.677;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2668,306,0 chrXV 1065453 . T A 2732 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=19.94;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2765,315,0 chrXV 1065460 . C A 2725 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=19.33;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2758,315,0 chrXV 1065462 . T C 2730 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.981;QD=19.09;ReadPosRankSum=1.684;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2763,315,0 chrXV 1065522 . A G 2420 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=17.54;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2453,273,0 chrXV 1065620 . T A 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.766;QD=22.24;ReadPosRankSum=1.690;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3669,414,0 chrXV 1065807 . A G 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=122;Dels=0.00;FS=2.905;HaplotypeScore=5.5231;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;MQRankSum=-2.167;QD=19.42;ReadPosRankSum=2.409;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2402,279,0 chrXV 1065809 . A G 2383 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=20.03;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2416,276,0 chrXV 1065861 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=21.28;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2969,324,0 chrXV 1065886 . C T 3193 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.73;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3226,354,0 chrXV 1065956 . A G 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=8.531;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;MQRankSum=-1.163;QD=15.21;ReadPosRankSum=2.336;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2010,228,0 chrXV 1065976 . A G 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.918;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;MQRankSum=-1.536;QD=13.57;ReadPosRankSum=1.667;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1471,171,0 chrXV 1065987 . T C 1361 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=12.37;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1394,162,0 chrXV 1065996 . T C 1060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=3.033;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=1.714;QD=10.93;ReadPosRankSum=2.399;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1093,126,0 chrXV 1065998 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=11.40;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1139,129,0 chrXV 1066011 . A G 1145 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=11.34;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1178,132,0 chrXV 1066028 . T C 1060 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=11.40;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1093,126,0 chrXV 1066043 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=69.2304;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=9.07;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:96:840,96,0 chrXV 1066106 . T G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.164;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=-0.693;QD=14.42;ReadPosRankSum=1.703;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1763,201,0 chrXV 1066180 . C A 1618 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=17.98;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1651,189,0 chrXV 1066203 . A C 2225 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=20.79;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2258,258,0 chrXV 1066603 . G C 2770 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.52;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2803,321,0 chrXV 1066871 . A T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.06;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4174,456,0 chrXV 1067351 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.40;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2607,285,0 chrXV 1067607 . T A 1838 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=4.5823;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.38;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1871,210,0 chrXV 1067609 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=6.2437;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.27;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1921,219,0 chrXV 1068179 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.78;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2863,312,0 chrXV 1068242 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.17;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2150,246,0 chrXV 1068254 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.84;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1846,204,0 chrXV 1068527 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=23.19;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2097,237,0 chrXV 1068560 . G C 2269 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.82;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2302,267,0 chrXV 1068573 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.433;QD=20.96;ReadPosRankSum=1.670;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2401,276,0 chrXV 1068722 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.10;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2574,294,0 chrXV 1068754 . T A 2041 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.22;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2074,243,0 chrXV 1068781 . T C 1781 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=17.46;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1814,213,0 chrXV 1068810 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=15.19;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1400,153,0 chrXV 1068821 . C A 1328 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=15.26;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1361,153,0 chrXV 1068822 . C T 1264 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=14.70;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1297,150,0 chrXV 1069113 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=23.02;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2865,312,0 chrXV 1069122 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=22.62;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2748,297,0 chrXV 1069129 . C A 2675 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.2741;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.23;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2708,291,0 chrXV 1069164 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.54;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2963,333,0 chrXV 1069274 . G C 3532.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=21.15;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3532,405,0 chrXV 1069292 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=19.72;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3110,360,0 chrXV 1069297 . T C 3003 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.02;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3036,345,0 chrXV 1069303 . C G 2782 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.05;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2815,321,0 chrXV 1069372 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=21.12;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2229,243,0 chrXV 1069379 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=21.50;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2398,258,0 chrXV 1069426 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.46;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2346,258,0 chrXV 1069504 . A G 1872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=-1.009;QD=19.91;ReadPosRankSum=2.293;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1905,216,0 chrXV 1069584 . C A 577 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;QD=21.37;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:69:610,69,0 chrXV 1069586 . T C 533 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=20.50;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,24:26:66:566,66,0 chrXV 1069591 . T C 454 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=20.64;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:57:487,57,0 chrXV 1069594 . G A 398 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:48:431,48,0 chrXV 1069599 . C T 96.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:129,15,0 chrXV 1069636 . G T 239 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=11.3236;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=4.98;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:30:272,30,0 chrXV 1069696 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=2;QD=8.43;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1062,120,0 chrXV 1069777 . C A 250 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.24;MQ0=2;QD=8.06;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:36:283,36,0 chrXV 1069779 . G C 216 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=2;QD=8.64;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:33:249,33,0 chrXV 1069780 . A G 216 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.08;MQ0=2;QD=9.82;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:249,33,0 chrXV 1069789 . A G 220 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=0;QD=16.92;SB=-4.899e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:253,33,0 chrXV 1069897 . A G 584 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=2;MQRankSum=-0.160;QD=5.73;ReadPosRankSum=2.401;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,100:102:72:617,72,0 chrXV 1069926 . A T 588 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.49;MQ0=2;MQRankSum=-0.265;QD=7.26;ReadPosRankSum=2.388;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,79:81:75:621,75,0 chrXV 1069942 . G A 605 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=2;QD=11.00;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:75:638,75,0 chrXV 1069945 . T G 599 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=2;QD=11.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:75:632,75,0 chrXV 1069960 . C A 282 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=0;QD=10.85;SB=-7.544e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:39:315,39,0 chrXV 1069963 . C T 166.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=0;QD=11.07;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:199,24,0 chrXV 1069966 . A C 86.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.024;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=0;MQRankSum=1.713;QD=6.16;ReadPosRankSum=2.491;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:3,11:14:15:119,15,0 chrXV 1069969 . A G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=0;MQRankSum=-0.198;QD=1.99;ReadPosRankSum=1.495;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,5:7:6:45,6,0 chrXV 1070184 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=13.33;MQ0=4;MQRankSum=1.666;QD=0.93;ReadPosRankSum=0.762;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:4,9:13:6:43,6,0 chrXV 1070200 . C A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=4;QD=0.80;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:43,6,0 chrXV 1070228 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.27;MQ0=4;QD=0.75;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,16:16:6:43,6,0 chrXV 1070243 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.77;MQ0=3;QD=0.80;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:43,6,0 chrXV 1070249 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=4;QD=0.80;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,14:15:6:43,6,0 chrXV 1070370 . T A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=19;Dels=0.00;FS=5.927;HaplotypeScore=2.8735;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;MQRankSum=-3.201;QD=0.89;ReadPosRankSum=3.377;SB=-5.426e+01 GT:AD:DP:GQ:PL 1/1:6,13:19:6:48,6,0 chrXV 1070376 . A T 254 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=2;QD=7.47;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:36:287,36,0 chrXV 1070382 . T C 87.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170;DP=37;Dels=0.00;FS=8.506;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=3;MQRankSum=-1.791;QD=2.35;ReadPosRankSum=2.067;SB=-6.882e+01 GT:AD:DP:GQ:PL 0/1:20,17:37:99:117,0,224 chrXV 1070388 . G A 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.358;DP=45;Dels=0.00;FS=14.225;HaplotypeScore=2.5352;MLEAC=1;MLEAF=0.500;MQ=30.47;MQ0=4;MQRankSum=-2.356;QD=2.67;ReadPosRankSum=2.085;SB=-8.400e+01 GT:AD:DP:GQ:PL 0/1:23,20:45:99:150,0,252 chrXV 1070401 . C T 292.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;DP=46;Dels=0.00;FS=13.975;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=30.21;MQ0=4;MQRankSum=1.775;QD=6.35;ReadPosRankSum=-2.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,24:46:99:322,0,167 chrXV 1070418 . T G 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.628;DP=47;Dels=0.00;FS=13.448;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.97;MQ0=4;MQRankSum=-2.272;QD=2.87;ReadPosRankSum=-0.887;SB=-9.547e+01 GT:AD:DP:GQ:PL 0/1:24,23:47:99:165,0,341 chrXV 1070423 . A G 300.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DP=47;Dels=0.00;FS=13.448;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.97;MQ0=4;MQRankSum=1.883;QD=6.38;ReadPosRankSum=1.932;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:23,24:47:99:330,0,161 chrXV 1070473 . G C 92.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=2;QD=7.10;SB=-2.220e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:125,15,0 chrXV 1070475 . A G 93.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=13;Dels=0.00;FS=7.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=2;MQRankSum=1.423;QD=7.17;ReadPosRankSum=1.423;SB=-2.220e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:126,15,0 chrXV 1070669 . C T 165.03 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=11.93;MQ0=37;QD=3.51;SB=-4.297e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:24:198,24,0 chrXV 1070680 . T C 89.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=44;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.31;MQ0=35;MQRankSum=-0.751;QD=2.03;ReadPosRankSum=-0.751;SB=-6.230e+01 GT:AD:DP:GQ:PL 1/1:21,23:44:15:122,15,0 chrXV 1070681 . G C 90.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=43;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.43;MQ0=34;MQRankSum=-0.751;QD=2.10;ReadPosRankSum=0.751;SB=-6.230e+01 GT:AD:DP:GQ:PL 1/1:21,22:43:15:123,15,0 chrXV 1070704 . C A 247 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.30;MQ0=42;QD=3.34;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:32,42:74:33:280,33,0 chrXV 1070717 . C T 240 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.23;MQ0=33;QD=3.43;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:30,40:70:33:273,33,0 chrXV 1070732 . T G 188.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.11;MQ0=32;QD=2.32;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:32,49:81:27:221,27,0 chrXV 1070736 . G A 201.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.02;MQ0=33;QD=2.48;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:33,48:81:27:234,27,0 chrXV 1070741 . A C 189.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.11;MQ0=34;QD=2.17;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,53:87:27:222,27,0 chrXV 1070855 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=3.9194;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=1;QD=1.09;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:43,6,0 chrXV 1070870 . T G 33.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=9;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=1;MQRankSum=1.067;QD=3.77;ReadPosRankSum=1.589;SB=-5.247e+01 GT:AD:DP:GQ:PL 1/1:2,7:9:9:66,9,0 chrXV 1070872 . A T 39.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.47;MQ0=3;QD=3.63;SB=-5.147e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:72,9,0 chrXV 1070883 . C T 152.03 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.50;MQ0=12;QD=5.24;SB=-4.297e+01 GT:AD:DP:GQ:PL 1/1:11,18:29:24:185,24,0 chrXV 1070895 . T A 184.01 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=11.86;MQ0=28;QD=3.83;SB=-4.299e+01 GT:AD:DP:GQ:PL 1/1:23,24:47:27:217,27,0 chrXV 1070909 . G C 350 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=20.27;MQ0=36;QD=3.98;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:31,56:88:48:383,48,0 chrXV 1070965 . G T 1133 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=47;QD=7.98;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:37,104:142:99:1166,129,0 chrXV 1071090 . T C 301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;MQRankSum=-0.746;QD=5.79;ReadPosRankSum=2.865;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:3,49:52:39:334,39,0 chrXV 1071098 . A G 378 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=6.52;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:48:411,48,0 chrXV 1071118 . T G 619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;MQRankSum=-1.582;QD=8.97;ReadPosRankSum=1.682;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:75:652,75,0 chrXV 1071122 . C T 703 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=9.37;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:84:736,84,0 chrXV 1071160 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=15.67;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1522,171,0 chrXV 1071181 . A G 1869 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=17.15;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1902,219,0 chrXV 1071203 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=19.22;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2109,243,0 chrXV 1071268 . A T 1818 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=22.44;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1851,210,0 chrXV 1071284 . T C 1704 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=20.29;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1737,201,0 chrXV 1071405 . T C 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.053;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;MQRankSum=1.497;QD=23.78;ReadPosRankSum=1.698;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2482,282,0 chrXV 1071436 . T C 1518 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.024;DP=100;Dels=0.00;FS=12.554;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=9;MQRankSum=3.615;QD=15.18;ReadPosRankSum=2.030;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:15,84:100:99:1551,149,0 chrXV 1071462 . A C 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DP=87;Dels=0.00;FS=6.327;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=26.40;MQ0=9;MQRankSum=-5.716;QD=0.94;ReadPosRankSum=0.140;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,28:87:99:112,0,1039 chrXV 1071465 . G A 897.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DP=82;Dels=0.00;FS=6.672;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=9;MQRankSum=5.550;QD=10.94;ReadPosRankSum=-0.723;SB=-2.200e+02 GT:AD:DP:GQ:PL 0/1:28,54:82:99:927,0,115 chrXV 1071466 . T C 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=84;Dels=0.00;FS=4.194;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.73;MQ0=9;MQRankSum=-5.769;QD=1.01;ReadPosRankSum=0.845;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,29:84:99:115,0,876 chrXV 1071470 . T C 708.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;DP=80;Dels=0.00;FS=15.824;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=9;MQRankSum=5.822;QD=8.85;ReadPosRankSum=1.001;SB=-1.255e+02 GT:AD:DP:GQ:PL 0/1:36,44:80:99:738,0,139 chrXV 1071476 . T G 666.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.901;DP=80;Dels=0.00;FS=18.744;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.87;MQ0=9;MQRankSum=6.135;QD=8.33;ReadPosRankSum=-0.497;SB=-9.050e+01 GT:AD:DP:GQ:PL 0/1:38,42:80:99:696,0,256 chrXV 1071487 . C T 259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.976;DP=78;Dels=0.00;FS=31.233;HaplotypeScore=89.7074;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=9;MQRankSum=-6.684;QD=3.32;ReadPosRankSum=1.570;SB=-5.149e-03 GT:AD:DP:GQ:PL 0/1:37,41:78:99:289,0,610 chrXV 1071518 . G A 572.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.075;DP=87;Dels=0.00;FS=57.562;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=3;MQRankSum=6.755;QD=6.57;ReadPosRankSum=-2.895;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:39,44:87:99:602,0,393 chrXV 1071534 . C T 372.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DP=93;Dels=0.00;FS=44.654;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=6;MQRankSum=-6.294;QD=4.00;ReadPosRankSum=1.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,34:93:99:402,0,736 chrXV 1071567 . C T 1442 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=8;QD=17.80;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1475,162,0 chrXV 1071583 . G A 1291 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=8;QD=16.99;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1324,144,0 chrXV 1071604 . C T 1218 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=11;QD=16.68;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1251,144,0 chrXV 1071619 . A G 881 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=13;MQRankSum=-0.685;QD=15.73;ReadPosRankSum=1.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,55:56:99:914,105,0 chrXV 1071642 . C G 596 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.19;MQ0=20;QD=10.46;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,55:57:75:629,75,0 chrXV 1071645 . T C 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;DP=61;Dels=0.00;FS=8.764;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.76;MQ0=21;MQRankSum=-2.966;QD=0.48;ReadPosRankSum=-2.819;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:38,23:61:59:59,0,422 chrXV 1071669 . A G 307.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DP=74;Dels=0.00;FS=2.424;HaplotypeScore=3.5104;MLEAC=1;MLEAF=0.500;MQ=17.49;MQ0=25;MQRankSum=1.573;QD=4.15;ReadPosRankSum=-0.531;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:37,37:74:99:337,0,188 chrXV 1071676 . C T 237.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.812;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=2.7217;MLEAC=1;MLEAF=0.500;MQ=16.77;MQ0=25;MQRankSum=0.485;QD=3.08;ReadPosRankSum=-0.951;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:39,36:75:99:267,0,213 chrXV 1071767 . C T 597.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.906;DP=123;Dels=0.00;FS=5.016;HaplotypeScore=47.7397;MLEAC=1;MLEAF=0.500;MQ=17.22;MQ0=27;MQRankSum=0.756;QD=4.85;ReadPosRankSum=0.764;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:58,65:123:99:627,0,328 chrXV 1072045 . A G 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.97;MQ0=166;MQRankSum=1.615;QD=0.35;ReadPosRankSum=0.822;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,108:204:76:102,0,76 chrXV 1072096 . A G 1056.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.848;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=4.5100;MLEAC=1;MLEAF=0.500;MQ=15.96;MQ0=105;MQRankSum=2.030;QD=2.97;ReadPosRankSum=1.066;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,187:356:99:1086,0,905 chrXV 1072171 . A C 968.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.471;DP=303;Dels=0.00;FS=3.789;HaplotypeScore=28.1736;MLEAC=1;MLEAF=0.500;MQ=16.72;MQ0=130;MQRankSum=0.428;QD=3.19;ReadPosRankSum=1.247;SB=-3.310e+02 GT:AD:DP:GQ:PL 0/1:153,149:303:99:998,0,615 chrXV 1072243 . C T 2795 filter AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=23.64;MQ0=108;QD=12.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:2828,312,0 chrXV 1072492 . A G 7970.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=350;Dels=0.00;FS=12.091;HaplotypeScore=13.2951;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=4;MQRankSum=-0.323;QD=22.77;ReadPosRankSum=2.980;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:3,346:350:99:7970,900,0 chrXV 1072596 . G T 541.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.594;DP=185;Dels=0.00;FS=3.937;HaplotypeScore=2.4892;MLEAC=1;MLEAF=0.500;MQ=17.19;MQ0=125;MQRankSum=-1.030;QD=2.92;ReadPosRankSum=0.378;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:84,99:185:99:571,0,487 chrXV 1072659 . G A 1466.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.653;DP=288;Dels=0.00;FS=9.941;HaplotypeScore=7.9754;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=19;MQRankSum=0.800;QD=5.09;ReadPosRankSum=-0.001;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:148,140:288:99:1496,0,1814 chrXV 1072660 . G A 1484.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.178;DP=288;Dels=0.00;FS=9.941;HaplotypeScore=7.9754;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=19;MQRankSum=0.575;QD=5.15;ReadPosRankSum=0.153;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:148,140:288:99:1514,0,1811 chrXV 1072858 . C T 296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.422;DP=161;Dels=0.00;FS=4.167;HaplotypeScore=4.8621;MLEAC=1;MLEAF=0.500;MQ=28.98;MQ0=17;MQRankSum=-6.312;QD=1.84;ReadPosRankSum=1.587;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:102,57:161:99:326,0,1536 chrXV 1072924 . A G 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DP=86;Dels=0.00;FS=27.862;HaplotypeScore=35.4323;MLEAC=1;MLEAF=0.500;MQ=26.94;MQ0=13;MQRankSum=-2.796;QD=1.76;ReadPosRankSum=1.490;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,39:86:99:181,0,528 chrXV 1072945 . T C 685 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=13;QD=10.22;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:84:718,84,0 chrXV 1072951 . G A 719 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=10;QD=9.85;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:84:752,84,0 chrXV 1072977 . G A 851 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=2;QD=11.99;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:884,99,0 chrXV 1072997 . A G 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.988;DP=89;Dels=0.00;FS=38.027;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;MQRankSum=4.108;QD=15.47;ReadPosRankSum=3.821;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:11,78:89:99:1410,159,0 chrXV 1073052 . C T 1513 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=14;QD=15.44;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1546,171,0 chrXV 1073094 . C T 1249 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=15;QD=13.43;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1282,141,0 chrXV 1073108 . C A 811 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=15;QD=11.59;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:96:844,96,0 chrXV 1073193 . A G 858.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.553;DP=65;Dels=0.00;FS=1.656;HaplotypeScore=4.0159;MLEAC=1;MLEAF=0.500;MQ=39.72;MQ0=7;MQRankSum=1.184;QD=13.20;ReadPosRankSum=-0.480;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:17,47:65:99:888,0,142 chrXV 1073204 . G A 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;DP=70;Dels=0.00;FS=5.056;HaplotypeScore=10.3583;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=6;MQRankSum=-3.094;QD=1.49;ReadPosRankSum=-1.518;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:52,18:70:99:134,0,954 chrXV 1073238 . T A 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.958;DP=59;Dels=0.00;FS=26.258;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=43.11;MQ0=5;MQRankSum=-3.504;QD=3.20;ReadPosRankSum=-0.977;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:42,17:59:99:219,0,736 chrXV 1073262 . A G 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;DP=61;Dels=0.00;FS=18.416;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=41.70;MQ0=5;MQRankSum=-4.465;QD=4.26;ReadPosRankSum=1.921;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:39,22:61:99:290,0,654 chrXV 1073294 . A C 239.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;DP=31;Dels=0.00;FS=6.680;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=35.01;MQ0=2;MQRankSum=-2.684;QD=7.71;ReadPosRankSum=-0.458;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:16,15:31:99:269,0,161 chrXV 1073437 . T C 144.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=13.10;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:177,21,0 chrXV 1073438 . T A 152.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=13.82;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:185,21,0 chrXV 1073445 . A G 249 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=13.83;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:282,33,0 chrXV 1073454 . C T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.86;MQ0=0;MQRankSum=-0.433;QD=0.72;ReadPosRankSum=0.818;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,8:17:42:42,0,152 chrXV 1073455 . G A 242 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=14.24;SB=-1.513e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:275,30,0 chrXV 1074491 . T C 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=43.10;MQ0=7;MQRankSum=-2.175;QD=0.29;ReadPosRankSum=1.923;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,8:49:44:44,0,756 chrXV 1074569 . G A 612 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=5;QD=15.69;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:72:645,72,0 chrXV 1074721 . A G 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=49;Dels=0.00;FS=23.256;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;MQRankSum=-1.004;QD=20.71;ReadPosRankSum=2.903;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:4,45:49:99:1048,120,0 chrXV 1074725 . A G 886 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=21.10;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:919,105,0 chrXV 1074746 . C T 421 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=23.39;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:51:454,51,0 chrXV 1074803 . A G 505 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=17;QD=10.98;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:46:63:538,63,0 chrXV 1075223 . C T 2563 SnpCluster AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.6086;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=2;QD=11.14;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:2596,285,0 chrXV 1075226 . C T 2478 SnpCluster AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=2;QD=11.06;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,220:224:99:2511,288,0 chrXV 1075230 . C T 2592 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=2;MQRankSum=0.577;QD=12.06;ReadPosRankSum=-0.740;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:2625,288,0 chrXV 1075231 . A G 2497 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=2;QD=11.61;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:2530,288,0 chrXV 1075245 . A G 2319 filter AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=6;QD=9.74;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,234:238:99:2352,270,0 chrXV 1075310 . C T 5150.01 filter AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=18.5200;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=4;QD=19.43;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5150,591,0 chrXV 1075521 . A G 4344.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=244;Dels=0.00;FS=6.909;HaplotypeScore=11.9228;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=41;MQRankSum=2.205;QD=17.80;ReadPosRankSum=2.352;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:2,240:244:99:4344,504,0 chrXV 1075556 . A C 5411.01 filter AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=22;QD=19.75;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5411,612,0 chrXV 1075901 . A G 1197.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.273;DP=203;Dels=0.00;FS=20.074;HaplotypeScore=10.0745;MLEAC=1;MLEAF=0.500;MQ=49.44;MQ0=2;MQRankSum=-11.027;QD=5.90;ReadPosRankSum=-0.039;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:125,76:203:99:1227,0,2503 chrXV 1076141 . T G 930.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;DP=168;Dels=0.00;FS=7.120;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=43.47;MQ0=7;MQRankSum=-5.305;QD=5.54;ReadPosRankSum=-1.254;SB=-4.390e+02 GT:AD:DP:GQ:PL 0/1:96,70:168:99:960,0,1818 chrXV 1076153 . G A 533.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DP=152;Dels=0.00;FS=0.646;HaplotypeScore=11.6114;MLEAC=1;MLEAF=0.500;MQ=43.23;MQ0=8;MQRankSum=-3.095;QD=3.51;ReadPosRankSum=-0.556;SB=-3.320e+02 GT:AD:DP:GQ:PL 0/1:94,58:152:99:563,0,1796 chrXV 1076454 . A G 371.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.763;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=8.1253;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=27;MQRankSum=-0.069;QD=7.13;ReadPosRankSum=-1.733;SB=-1.845e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:27:404,27,0 chrXV 1076510 . A G 286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5239;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=0;MQRankSum=1.588;QD=3.92;ReadPosRankSum=-0.770;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,71:73:36:319,36,0 chrXV 1076581 . A G 376 filter AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=57;QD=1.89;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,199:199:45:409,45,0 chrXV 1076602 . A C 171.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=61;MQRankSum=0.149;QD=0.97;ReadPosRankSum=2.939;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:3,173:176:24:204,24,0 chrXV 1076641 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.93;MQ0=55;MQRankSum=-0.550;QD=0.32;ReadPosRankSum=1.754;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:4,58:62:6:51,6,0 chrXV 1076725 . C G 140.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=11;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=3;MQRankSum=0.747;QD=12.73;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,10:11:21:173,21,0 chrXV 1076760 . T C 177.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=37;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.36;MQ0=29;MQRankSum=0.747;QD=4.79;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:21:210,21,0 chrXV 1076778 . G A 125.13 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.92;MQ0=45;QD=2.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:52:18:158,18,0 chrXV 1077677 . T C 78.26 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=17.34;MQ0=30;QD=1.67;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:47:15:111,15,0 chrXV 1077923 . T C 724 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=9;QD=17.24;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:90:757,90,0 chrXV 1077928 . T C 509 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.667;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=9;MQRankSum=-1.733;QD=14.54;ReadPosRankSum=1.600;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,34:35:42:542,42,0 chrXV 1078011 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=1;QD=21.30;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1950,219,0 chrXV 1078958 . C T 1551 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=19;QD=19.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1584,171,0 chrXV 1079205 . G A 1141 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=10;QD=17.55;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1174,141,0 chrXV 1079232 . A T 324 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.25;MQ0=22;QD=7.36;SB=-9.800e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:42:357,42,0 chrXV 1079377 . G C 1742 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4464;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=23;QD=16.13;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:1775,201,0 chrXV 1079411 . A G 226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.108;DP=56;Dels=0.00;FS=1.204;HaplotypeScore=7.2760;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=15;MQRankSum=2.778;QD=4.04;ReadPosRankSum=-0.352;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:27,29:56:99:256,0,381 chrXV 1079471 . G A 264 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=4;QD=13.20;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:297,33,0 chrXV 1079479 . G A 241 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=1;QD=16.07;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:30:274,30,0 chrXV 1079504 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=18.15;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1358,147,0 chrXV 1079546 . A G 2260 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=3;QD=20.93;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2293,264,0 chrXV 1079620 . C T 76.51 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.98;MQ0=7;QD=5.89;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:109,12,0 chrXV 1079652 . T C 124.13 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=15;QD=4.97;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:157,18,0 chrXV 1079744 . C G 792 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=14;QD=11.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:96:825,96,0 chrXV 1083260 . A G 150.06 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.69;MQ0=101;QD=1.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,106:108:21:183,21,0 chrXV 1083302 . T C 187.03 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.72;MQ0=48;QD=3.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:57:24:220,24,0 chrXV 1083328 . G T 41.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.29;MQ0=18;QD=1.68;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,24:25:9:74,9,0 chrXV 1083465 . A G 124.13 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.92;MQ0=9;QD=6.90;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:157,18,0 chrXV 1083467 . C T 149.06 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=9;QD=7.10;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:182,21,0 chrXV 1083479 . T G 152.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.239;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=9;MQRankSum=-0.083;QD=5.07;ReadPosRankSum=1.569;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:1,29:30:21:185,21,0 chrXV 1083726 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.11;MQ0=11;QD=0.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:6:43,6,0 chrXV 1083729 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.72;MQ0=8;QD=0.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:29:6:43,6,0 chrXV 1083737 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.60;MQ0=1;QD=0.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:6:43,6,0 chrXVI 11402 . G C 274 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=21.54;MQ0=12;QD=9.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:36:307,36,0 chrXVI 11494 . A G 1062 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=11;QD=19.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1095,123,0 chrXVI 11526 . G A 355 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=7;QD=14.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:42:388,42,0 chrXVI 11600 . T C 559 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=10;MQRankSum=-0.809;QD=13.97;ReadPosRankSum=1.502;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:69:592,69,0 chrXVI 11625 . C T 1183 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=10;QD=16.90;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1216,138,0 chrXVI 11629 . A G 1254 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=11;QD=16.50;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1287,147,0 chrXVI 11653 . G A 2294 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=10.6769;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=10;QD=18.65;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2327,258,0 chrXVI 11734 . T C 238.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;DP=113;Dels=0.00;FS=5.680;HaplotypeScore=5.4113;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=54;MQRankSum=1.706;QD=2.11;ReadPosRankSum=-1.640;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:65,47:113:99:268,0,874 chrXVI 11742 . C T 991 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=20.38;MQ0=54;MQRankSum=-0.127;QD=10.32;ReadPosRankSum=-1.733;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1024,117,0 chrXVI 11913 . T A 1175 filter AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=17.60;MQ0=109;QD=6.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:1208,132,0 chrXVI 12429 . C T 2252 filter AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=19.68;MQ0=87;QD=10.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,203:208:99:2285,258,0 chrXVI 12492 . C T 1520 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=66;MQRankSum=0.306;QD=10.07;ReadPosRankSum=-0.958;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:1553,156,0 chrXVI 12519 . A C 574 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.28;MQ0=66;QD=5.80;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,98:99:69:607,69,0 chrXVI 12609 . A G 2765 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=34;QD=16.56;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2798,321,0 chrXVI 12625 . A T 3381.01 filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=9;QD=20.13;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3381,378,0 chrXVI 12641 . G T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.7418;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=2;QD=20.62;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3918,435,0 chrXVI 12737 . A G 523 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.94;MQ0=38;QD=7.37;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:66:556,66,0 chrXVI 12999 . A G 873 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=1;QD=15.87;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:906,105,0 chrXVI 13130 . C G 304 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=7;QD=7.79;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:39:337,39,0 chrXVI 13133 . T C 326 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=7;QD=7.76;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:42:359,42,0 chrXVI 13200 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=2;QD=6.52;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,140:143:99:965,111,0 chrXVI 13207 . A G 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=6.730;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=3;MQRankSum=1.186;QD=7.42;ReadPosRankSum=1.708;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,148:150:99:1146,132,0 chrXVI 13243 . A G 987 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=20;QD=7.37;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1020,120,0 chrXVI 13304 . C G 1089 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=27;QD=14.92;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,67:73:99:1122,129,0 chrXVI 13708 . G A 203.01 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=16;QD=6.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:27:236,27,0 chrXVI 14361 . C T 2298 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=43;QD=13.28;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,171:173:99:2331,273,0 chrXVI 14379 . A G 2644 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=27;QD=14.94;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,175:177:99:2677,312,0 chrXVI 14487 . C G 4580.01 filter AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=11.0781;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=37;QD=17.35;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,258:264:99:4580,563,0 chrXVI 14558 . T C 2808 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=51;QD=14.33;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2841,330,0 chrXVI 14612 . G T 480 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=183.0295;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=7.16;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:60:513,60,0 chrXVI 14630 . T C 753 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=0;QD=8.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:90:786,90,0 chrXVI 14658 . C T 1438 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=13.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1471,159,0 chrXVI 14667 . G T 1439 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=88.2283;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=12.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1472,171,0 chrXVI 14741 . G A 346 filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=60;QD=2.14;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,161:162:42:379,42,0 chrXVI 15418 . C G 2274 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3948;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=5;QD=18.34;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2307,281,0 chrXVI 15497 . G A 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DP=30;Dels=0.00;FS=32.635;HaplotypeScore=11.6678;MLEAC=1;MLEAF=0.500;MQ=44.50;MQ0=5;MQRankSum=-3.356;QD=1.27;ReadPosRankSum=-3.245;SB=0.965 GT:AD:DP:GQ:PL 0/1:15,15:30:68:68,0,242 chrXVI 15522 . T G 745 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=49;Dels=0.00;FS=8.424;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=5;MQRankSum=1.268;QD=15.20;ReadPosRankSum=2.226;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:90:778,90,0 chrXVI 15669 . C A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=1;QD=8.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:56,6,0 chrXVI 15762 . C A 242 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.84;MQ0=40;QD=3.67;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:30:275,30,0 chrXVI 15768 . G A 268 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=39;QD=4.06;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:33:301,33,0 chrXVI 16327 . C T 3089.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.280;DP=299;Dels=0.00;FS=0.900;HaplotypeScore=23.1943;MLEAC=1;MLEAF=0.500;MQ=38.88;MQ0=0;MQRankSum=0.402;QD=10.33;ReadPosRankSum=-0.722;SB=-1.439e+03 GT:AD:DP:GQ:PL 0/1:133,165:299:99:3119,0,2082 chrXVI 16410 . G A 529.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.030;DP=201;Dels=0.00;FS=64.748;HaplotypeScore=10.3441;MLEAC=1;MLEAF=0.500;MQ=45.48;MQ0=2;MQRankSum=-2.478;QD=2.63;ReadPosRankSum=-2.104;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,44:201:99:559,0,2653 chrXVI 16412 . T G 454.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.124;DP=198;Dels=0.00;FS=94.736;HaplotypeScore=12.7102;MLEAC=1;MLEAF=0.500;MQ=45.60;MQ0=2;MQRankSum=-1.551;QD=2.29;ReadPosRankSum=-2.269;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,41:198:99:484,0,2910 chrXVI 16416 . G A 2643.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.124;DP=189;Dels=0.00;FS=72.899;HaplotypeScore=14.3857;MLEAC=1;MLEAF=0.500;MQ=45.34;MQ0=5;MQRankSum=2.194;QD=13.98;ReadPosRankSum=2.853;SB=-1.389e+03 GT:AD:DP:GQ:PL 0/1:38,151:189:99:2673,0,379 chrXVI 16500 . A G 4720.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=11.0263;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=8;MQRankSum=-1.653;QD=17.29;ReadPosRankSum=1.719;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:2,269:273:99:4720,566,0 chrXVI 16590 . A G 2917.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.560;DP=313;Dels=0.00;FS=6.962;HaplotypeScore=11.5835;MLEAC=1;MLEAF=0.500;MQ=42.90;MQ0=4;MQRankSum=5.329;QD=9.32;ReadPosRankSum=2.408;SB=-1.690e+03 GT:AD:DP:GQ:PL 0/1:128,185:313:99:2947,0,1902 chrXVI 16608 . T A 3048.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.524;DP=295;Dels=0.00;FS=28.810;HaplotypeScore=17.3860;MLEAC=1;MLEAF=0.500;MQ=39.95;MQ0=4;MQRankSum=9.086;QD=10.33;ReadPosRankSum=1.438;SB=-1.625e+03 GT:AD:DP:GQ:PL 0/1:117,178:295:99:3078,0,1054 chrXVI 16638 . C T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.414;DP=317;Dels=0.00;FS=82.055;HaplotypeScore=23.6604;MLEAC=1;MLEAF=0.500;MQ=44.63;MQ0=2;MQRankSum=-14.287;QD=0.21;ReadPosRankSum=3.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,113:317:97:97,0,3544 chrXVI 16689 . G A 455.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.375;DP=357;Dels=0.00;FS=46.079;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=42.98;MQ0=1;MQRankSum=-12.621;QD=1.27;ReadPosRankSum=-2.193;SB=-2.940e+02 GT:AD:DP:GQ:PL 0/1:223,133:357:99:485,0,4380 chrXVI 16723 . A G 1190.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.264;DP=308;Dels=0.00;FS=0.432;HaplotypeScore=8.8188;MLEAC=1;MLEAF=0.500;MQ=44.21;MQ0=2;MQRankSum=-7.212;QD=3.86;ReadPosRankSum=1.525;SB=-6.180e+02 GT:AD:DP:GQ:PL 0/1:195,112:308:99:1220,0,3863 chrXVI 16724 . A T 1345.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;DP=308;Dels=0.00;FS=0.899;HaplotypeScore=8.8188;MLEAC=1;MLEAF=0.500;MQ=44.11;MQ0=2;MQRankSum=-7.523;QD=4.37;ReadPosRankSum=0.871;SB=-7.070e+02 GT:AD:DP:GQ:PL 0/1:192,116:308:99:1375,0,4006 chrXVI 16727 . C A 3724.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=1;MLEAF=0.500;MQ=43.97;MQ0=2;MQRankSum=7.414;QD=12.05;ReadPosRankSum=-0.989;SB=-1.936e+03 GT:AD:DP:GQ:PL 0/1:117,192:309:99:3724,0,1349 chrXVI 16770 . T C 1261.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.207;DP=246;Dels=0.00;FS=3.949;HaplotypeScore=20.2032;MLEAC=1;MLEAF=0.500;MQ=44.94;MQ0=2;MQRankSum=-5.587;QD=5.13;ReadPosRankSum=-0.472;SB=-4.570e+02 GT:AD:DP:GQ:PL 0/1:141,104:246:99:1291,0,2608 chrXVI 16821 . G A 369.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.302;DP=247;Dels=0.00;FS=1.300;HaplotypeScore=15.7189;MLEAC=1;MLEAF=0.500;MQ=46.30;MQ0=0;MQRankSum=-10.172;QD=1.49;ReadPosRankSum=0.304;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:143,104:247:99:399,0,2907 chrXVI 16847 . T C 4593.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=15.0934;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=15.26;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,300:301:99:4593,543,0 chrXVI 16952 . C T 371.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.129;DP=159;Dels=0.01;FS=4.806;HaplotypeScore=62.0680;MLEAC=1;MLEAF=0.500;MQ=47.17;MQ0=0;MQRankSum=-3.714;QD=2.33;ReadPosRankSum=-0.325;SB=-4.340e+02 GT:AD:DP:GQ:PL 0/1:97,61:158:99:401,0,1384 chrXVI 16980 . T A 2563 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4098;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=16.02;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2596,288,0 chrXVI 17068 . G A 1104.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;DP=133;Dels=0.00;FS=9.955;HaplotypeScore=4.1336;MLEAC=1;MLEAF=0.500;MQ=58.25;MQ0=0;MQRankSum=-0.448;QD=8.30;ReadPosRankSum=-1.286;SB=-6.230e+02 GT:AD:DP:GQ:PL 0/1:64,69:133:99:1134,0,1143 chrXVI 17172 . T G 839.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;DP=160;Dels=0.00;FS=2.013;HaplotypeScore=8.2505;MLEAC=1;MLEAF=0.500;MQ=47.63;MQ0=0;MQRankSum=-4.427;QD=5.24;ReadPosRankSum=3.082;SB=-4.750e+02 GT:AD:DP:GQ:PL 0/1:95,64:160:99:869,0,1769 chrXVI 17176 . T C 926.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.257;DP=166;Dels=0.00;FS=1.247;HaplotypeScore=8.2505;MLEAC=1;MLEAF=0.500;MQ=47.96;MQ0=0;MQRankSum=-3.361;QD=5.58;ReadPosRankSum=3.022;SB=-4.800e+02 GT:AD:DP:GQ:PL 0/1:99,66:166:99:956,0,1827 chrXVI 17345 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=19.47;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3187,354,0 chrXVI 17370 . T C 3008 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=54.1406;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=18.92;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3041,351,0 chrXVI 17384 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=3.012;HaplotypeScore=61.6825;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;MQRankSum=2.261;QD=17.68;ReadPosRankSum=2.387;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2791,318,0 chrXVI 17412 . A T 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;DP=197;Dels=0.00;FS=3.702;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;MQRankSum=-1.134;QD=14.92;ReadPosRankSum=-0.800;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:2973,314,0 chrXVI 17448 . G A 1166.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.332;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=44.80;MQ0=0;MQRankSum=-0.389;QD=5.28;ReadPosRankSum=-0.828;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:115,103:221:99:1196,0,1303 chrXVI 17474 . A G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;MQRankSum=-0.656;QD=12.79;ReadPosRankSum=1.653;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,218:221:99:2859,333,0 chrXVI 17495 . C T 990.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.395;DP=206;Dels=0.00;FS=6.859;HaplotypeScore=14.7513;MLEAC=1;MLEAF=0.500;MQ=42.52;MQ0=0;MQRankSum=0.852;QD=4.81;ReadPosRankSum=0.805;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:116,90:206:99:1020,0,1030 chrXVI 17536 . T C 1312.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.137;DP=185;Dels=0.00;FS=3.482;HaplotypeScore=7.2760;MLEAC=1;MLEAF=0.500;MQ=36.08;MQ0=2;MQRankSum=-2.417;QD=7.09;ReadPosRankSum=1.944;SB=-6.740e+02 GT:AD:DP:GQ:PL 0/1:77,105:185:99:1342,0,1019 chrXVI 17542 . C T 1145.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.401;DP=181;Dels=0.00;FS=5.373;HaplotypeScore=8.9037;MLEAC=1;MLEAF=0.500;MQ=35.62;MQ0=2;MQRankSum=1.607;QD=6.33;ReadPosRankSum=-2.351;SB=-4.130e+02 GT:AD:DP:GQ:PL 0/1:102,78:181:99:1175,0,1336 chrXVI 17567 . A C 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.412;DP=186;Dels=0.00;FS=1.231;HaplotypeScore=151.4955;MLEAC=1;MLEAF=0.500;MQ=31.97;MQ0=4;MQRankSum=-0.719;QD=0.45;ReadPosRankSum=-4.677;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:176,10:186:99:114,0,112 chrXVI 17569 . A G 118.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;DP=180;Dels=0.00;FS=5.176;HaplotypeScore=151.4955;MLEAC=1;MLEAF=0.500;MQ=31.71;MQ0=4;MQRankSum=-0.344;QD=0.66;ReadPosRankSum=3.917;SB=-1.371e+03 GT:AD:DP:GQ:PL 0/1:8,172:180:16:148,0,16 chrXVI 17582 . T G 1166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.864;DP=180;Dels=0.00;FS=4.549;HaplotypeScore=4.9350;MLEAC=1;MLEAF=0.500;MQ=34.59;MQ0=9;MQRankSum=-1.049;QD=6.48;ReadPosRankSum=-2.895;SB=-7.940e+02 GT:AD:DP:GQ:PL 0/1:83,97:180:99:1196,0,1156 chrXVI 17611 . T C 396.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.431;DP=161;Dels=0.01;FS=5.892;HaplotypeScore=9.9070;MLEAC=1;MLEAF=0.500;MQ=30.42;MQ0=12;MQRankSum=-1.902;QD=2.46;ReadPosRankSum=0.764;SB=-3.740e+02 GT:AD:DP:GQ:PL 0/1:71,89:160:99:426,0,829 chrXVI 17634 . T G 787 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.7475;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=10;MQRankSum=-0.725;QD=5.47;ReadPosRankSum=2.413;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:2,142:144:96:820,96,0 chrXVI 17635 . A T 220.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;DP=146;Dels=0.00;FS=30.897;HaplotypeScore=11.6631;MLEAC=1;MLEAF=0.500;MQ=26.74;MQ0=10;MQRankSum=0.141;QD=1.51;ReadPosRankSum=3.325;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:59,87:146:99:250,0,353 chrXVI 17679 . T C 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.931;DP=132;Dels=0.00;FS=47.889;HaplotypeScore=6.1532;MLEAC=1;MLEAF=0.500;MQ=14.74;MQ0=5;MQRankSum=-0.875;QD=0.33;ReadPosRankSum=1.454;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,46:132:74:74,0,114 chrXVI 17764 . G T 1874 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.3627;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=12;QD=18.55;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1907,216,0 chrXVI 17778 . G A 1561 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=14;QD=17.54;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1594,174,0 chrXVI 17787 . C T 1200 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=15;QD=14.81;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1233,138,0 chrXVI 17843 . T C 1290 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=10;QD=15.00;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:7,79:86:99:1323,156,0 chrXVI 17920 . C T 3227.04 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=8.8183;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=10;QD=22.26;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3260,363,0 chrXVI 17947 . T C 895.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=33.83;MQ0=13;MQRankSum=0.333;QD=7.46;ReadPosRankSum=-3.201;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:65,55:120:99:925,0,1138 chrXVI 17980 . T C 1099 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.545;DP=65;Dels=0.00;FS=5.150;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=11;MQRankSum=3.210;QD=16.91;ReadPosRankSum=3.423;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:5,59:65:99:1132,132,0 chrXVI 18013 . G A 332.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DP=46;Dels=0.00;FS=34.031;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=21;MQRankSum=2.706;QD=7.22;ReadPosRankSum=-1.594;SB=-1.302e+01 GT:AD:DP:GQ:PL 0/1:18,27:46:47:362,0,47 chrXVI 18073 . C T 1262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.954;DP=171;Dels=0.00;FS=18.082;HaplotypeScore=4.8375;MLEAC=1;MLEAF=0.500;MQ=22.82;MQ0=83;MQRankSum=0.285;QD=7.38;ReadPosRankSum=4.112;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:68,103:171:99:1292,0,274 chrXVI 19227 . A G 101.26 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.58;MQ0=25;QD=2.41;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:14,28:42:15:134,15,0 chrXVI 19230 . G C 94.26 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.77;MQ0=24;QD=2.14;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:15:127,15,0 chrXVI 19252 . T G 278 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.35;MQ0=22;MQRankSum=0.302;QD=4.71;ReadPosRankSum=2.317;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:13,46:59:36:311,36,0 chrXVI 19253 . T C 277 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.069;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=22;MQRankSum=-1.305;QD=4.54;ReadPosRankSum=2.324;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,58:61:36:310,36,0 chrXVI 19268 . G A 384 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.34;MQ0=13;QD=6.30;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,60:61:48:417,48,0 chrXVI 19289 . C T 552 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=11;QD=8.12;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:66:585,66,0 chrXVI 19305 . G A 603 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=11;QD=9.00;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:72:636,72,0 chrXVI 19338 . G A 496 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=3;QD=12.40;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:3,37:40:57:529,57,0 chrXVI 19349 . C T 384 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=12.39;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:45:417,45,0 chrXVI 19385 . G A 266 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=10;QD=10.64;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:33:299,33,0 chrXVI 19406 . A G 252 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=10;QD=10.50;SB=-9.499e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:33:285,33,0 chrXVI 19410 . T G 392 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;DP=33;Dels=0.00;FS=5.836;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.94;MQ0=10;MQRankSum=-0.980;QD=11.88;ReadPosRankSum=1.583;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:51:425,51,0 chrXVI 19466 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=22.99;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1918,216,0 chrXVI 19482 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;QD=23.09;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2388,264,0 chrXVI 19545 . A G 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.882;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;MQRankSum=-1.299;QD=22.23;ReadPosRankSum=1.693;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1989,228,0 chrXVI 19582 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=13.66;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1003,117,0 chrXVI 19590 . G A 725 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=11.33;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:90:758,90,0 chrXVI 19596 . A G 566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=12.937;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;MQRankSum=-0.734;QD=9.59;ReadPosRankSum=1.674;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:72:599,72,0 chrXVI 19639 . G A 624 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=7.90;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:72:657,72,0 chrXVI 19655 . G C 866 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=10.43;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:899,102,0 chrXVI 19657 . C T 892 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=10.75;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:925,102,0 chrXVI 19659 . G A 882 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=10.63;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:915,102,0 chrXVI 19695 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=11.48;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:997,111,0 chrXVI 19696 . C T 895 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=10.65;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:928,108,0 chrXVI 19706 . G A 968 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=11.39;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1001,114,0 chrXVI 19727 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=11.45;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:995,114,0 chrXVI 19738 . A G 759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;MQRankSum=1.056;QD=9.26;ReadPosRankSum=1.690;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:96:792,96,0 chrXVI 19740 . A G 796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;MQRankSum=0.211;QD=9.48;ReadPosRankSum=1.690;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:96:829,96,0 chrXVI 19792 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=16.44;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1957,228,0 chrXVI 19818 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=21.03;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2641,294,0 chrXVI 19918 . T C 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;MQRankSum=0.449;QD=22.40;ReadPosRankSum=1.689;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1847,216,0 chrXVI 19964 . T C 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=4.033;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;MQRankSum=-0.150;QD=20.99;ReadPosRankSum=1.689;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1733,198,0 chrXVI 20018 . C G 1851 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=18.33;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1884,216,0 chrXVI 20036 . G T 1978 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=19.39;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2011,219,0 chrXVI 20054 . T G 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=100;Dels=0.00;FS=8.445;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=0.825;QD=18.07;ReadPosRankSum=2.399;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,95:100:99:1840,210,0 chrXVI 20075 . T G 1549 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=18.01;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1582,186,0 chrXVI 20093 . G C 1332 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=17.53;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1365,159,0 chrXVI 20127 . T A 1164 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=17.64;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1197,135,0 chrXVI 20134 . C T 1039 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=17.03;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1072,117,0 chrXVI 20140 . G T 862 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;QD=15.96;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:895,96,0 chrXVI 20186 . G A 274 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=3.61;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:33:307,33,0 chrXVI 20220 . A G 672 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=8.10;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:81:705,81,0 chrXVI 20272 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=16.77;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1123,129,0 chrXVI 20283 . C T 939 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=16.77;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:972,114,0 chrXVI 20286 . G C 885 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=15.80;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:918,108,0 chrXVI 20295 . A G 870 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=16.11;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:903,108,0 chrXVI 20347 . T C 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=73;Dels=0.00;FS=2.824;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;MQRankSum=-1.616;QD=17.58;ReadPosRankSum=2.381;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:2,69:73:99:1316,156,0 chrXVI 20495 . G C 1574 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=20.71;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1607,186,0 chrXVI 20538 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.070;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;MQRankSum=-0.451;QD=20.96;ReadPosRankSum=1.637;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1563,186,0 chrXVI 20554 . G A 1485 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=19.04;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1518,174,0 chrXVI 20565 . G C 1392 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=17.85;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1425,174,0 chrXVI 20591 . G T 1478 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=17.81;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1511,171,0 chrXVI 20613 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=14.91;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1151,129,0 chrXVI 20631 . C T 1196 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=15.74;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1229,141,0 chrXVI 20666 . G C 991 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=14.16;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1024,126,0 chrXVI 20668 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=14.65;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1044,120,0 chrXVI 20677 . A G 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=68;Dels=0.00;FS=3.052;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;MQRankSum=-2.374;QD=13.41;ReadPosRankSum=2.374;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:2,63:68:99:945,114,0 chrXVI 20704 . C T 102.26 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=53.9770;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=1.60;SB=-7.863e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:15:135,15,0 chrXVI 20774 . T A 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=0.820;QD=21.05;ReadPosRankSum=1.696;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2033,234,0 chrXVI 20793 . G T 1887 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=20.97;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1920,219,0 chrXVI 20801 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=18.96;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1891,222,0 chrXVI 20853 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;QD=19.81;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1202,141,0 chrXVI 20867 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=44.4121;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;QD=21.38;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1102,135,0 chrXVI 20903 . T A 831 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;QD=23.08;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:864,93,0 chrXVI 20916 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=20.72;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:90:779,90,0 chrXVI 20924 . T C 791 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=20.28;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:93:824,93,0 chrXVI 20927 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=20.44;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:93:871,93,0 chrXVI 20947 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=20.42;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1197,132,0 chrXVI 20962 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=21.63;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1547,171,0 chrXVI 20964 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=21.74;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1598,180,0 chrXVI 21007 . T C 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.831;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;MQRankSum=-0.878;QD=22.21;ReadPosRankSum=1.685;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1654,192,0 chrXVI 21048 . G A 1271 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=16.95;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1304,144,0 chrXVI 21070 . A G 954 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=13.63;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:987,111,0 chrXVI 21082 . G C 810 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=11.57;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:843,99,0 chrXVI 21094 . T C 679 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=10.95;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:81:712,81,0 chrXVI 21096 . A G 676 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=7.924;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=0.279;QD=10.90;ReadPosRankSum=1.676;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:81:709,81,0 chrXVI 21102 . G A 553 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=-1.114;QD=9.87;ReadPosRankSum=1.670;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:66:586,66,0 chrXVI 21105 . G T 487 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=8.85;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:60:520,60,0 chrXVI 21112 . T C 479 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=9.04;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:60:512,60,0 chrXVI 21136 . C T 317 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=7.55;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:42:350,42,0 chrXVI 21163 . C T 406 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;QD=9.02;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:439,51,0 chrXVI 21171 . G A 386 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=9.19;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:48:419,48,0 chrXVI 21172 . T A 387 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=9.21;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:48:420,48,0 chrXVI 21201 . A G 1233 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=16.22;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1266,147,0 chrXVI 21256 . C G 2984 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=21.01;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3017,342,0 chrXVI 21273 . T G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=157;Dels=0.00;FS=2.587;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.194;QD=20.83;ReadPosRankSum=2.916;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3271,372,0 chrXVI 21314 . C A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=21.56;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3298,366,0 chrXVI 21346 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=23.69;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2829,312,0 chrXVI 21363 . A T 2408 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=23.15;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2441,273,0 chrXVI 21404 . T C 2103 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=19.12;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2136,246,0 chrXVI 21426 . A G 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=97.6941;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=0.817;QD=19.21;ReadPosRankSum=1.699;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2069,234,0 chrXVI 21507 . G A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=21.59;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4274,465,0 chrXVI 21518 . A G 4102.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=21.36;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4102,462,0 chrXVI 21542 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.03;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3158,360,0 chrXVI 21600 . G C 1516 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=14.58;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,100:104:99:1549,180,0 chrXVI 21603 . C T 1601 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.858;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7401;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;MQRankSum=1.261;QD=15.39;ReadPosRankSum=1.698;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1634,183,0 chrXVI 21607 . T C 1525 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.272;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;MQRankSum=0.442;QD=14.95;ReadPosRankSum=1.528;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1558,174,0 chrXVI 21630 . T C 1467 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=13.58;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1500,171,0 chrXVI 21642 . T A 1541 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=13.64;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1574,180,0 chrXVI 21690 . A C 2089 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=1.703;QD=17.85;ReadPosRankSum=1.703;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2122,243,0 chrXVI 21691 . G A 2111 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=18.04;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2144,240,0 chrXVI 21700 . C G 2380 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=18.59;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2413,270,0 chrXVI 21806 . G T 1959 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=21.29;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1992,228,0 chrXVI 21824 . G C 1795 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=20.63;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1828,207,0 chrXVI 21870 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=20.94;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1918,222,0 chrXVI 21970 . C A 1818 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0143;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.39;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1851,204,0 chrXVI 21980 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.03;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1842,204,0 chrXVI 22097 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.48;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2483,267,0 chrXVI 22192 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.03;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3041,345,0 chrXVI 22304 . T A 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.161;DP=128;Dels=0.00;FS=6.475;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.643;QD=21.66;ReadPosRankSum=2.373;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2806,309,0 chrXVI 22333 . A G 2475 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.64;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2508,291,0 chrXVI 22364 . A C 2456 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.19;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2489,294,0 chrXVI 22373 . A T 2484 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.62;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2517,276,0 chrXVI 22388 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=16.83;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2356,267,0 chrXVI 22478 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.31;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2799,309,0 chrXVI 22543 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.6557;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.94;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3195,345,0 chrXVI 22544 . T C 3034 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.6557;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.09;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3067,348,0 chrXVI 22571 . A G 2466 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.27;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2499,282,0 chrXVI 22695 . T A 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.512;QD=22.49;ReadPosRankSum=1.705;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2867,327,0 chrXVI 22824 . G A 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=4.206;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.385;QD=17.82;ReadPosRankSum=-0.834;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1958,210,0 chrXVI 22826 . A T 1897 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=17.90;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1930,210,0 chrXVI 22892 . T C 2316 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=15.04;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2349,264,0 chrXVI 22902 . A C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.214;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.057;QD=16.19;ReadPosRankSum=1.709;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2510,288,0 chrXVI 22957 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=15.38;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:3384,372,0 chrXVI 23156 . T C 2464.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.032;DP=301;Dels=0.00;FS=16.932;HaplotypeScore=22.2770;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=-4.894;QD=8.19;ReadPosRankSum=1.073;SB=-1.040e+03 GT:AD:DP:GQ:PL 0/1:156,144:301:99:2494,0,2835 chrXVI 23199 . G T 2211.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.246;DP=322;Dels=0.00;FS=5.083;HaplotypeScore=32.3151;MLEAC=1;MLEAF=0.500;MQ=54.21;MQ0=0;MQRankSum=-4.323;QD=6.87;ReadPosRankSum=-1.552;SB=-1.004e+03 GT:AD:DP:GQ:PL 0/1:176,144:322:99:2241,0,3225 chrXVI 23219 . A T 6031.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=21.39;SB=-3.432e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6031,675,0 chrXVI 23234 . A G 5693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=307;Dels=0.00;FS=6.843;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.358;QD=18.54;ReadPosRankSum=2.409;SB=-3.427e+03 GT:AD:DP:GQ:PL 1/1:2,303:307:99:5693,666,0 chrXVI 23426 . G A 6372.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=27.6024;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.10;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:6372,723,0 chrXVI 23432 . G A 2118.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.127;DP=301;Dels=0.00;FS=4.470;HaplotypeScore=12.9461;MLEAC=1;MLEAF=0.500;MQ=53.37;MQ0=0;MQRankSum=-1.877;QD=7.04;ReadPosRankSum=1.702;SB=-1.322e+03 GT:AD:DP:GQ:PL 0/1:155,146:301:99:2148,0,2751 chrXVI 23456 . A G 6049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.671;DP=294;Dels=0.00;FS=4.281;HaplotypeScore=20.3165;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.498;QD=20.57;ReadPosRankSum=2.931;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:5,288:294:99:6049,693,0 chrXVI 23495 . G T 6701.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=20.9384;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.81;SB=-3.963e+03 GT:AD:DP:GQ:PL 1/1:0,321:322:99:6701,747,0 chrXVI 23504 . G A 2323.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.667;DP=315;Dels=0.00;FS=3.657;HaplotypeScore=18.4826;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=0.429;QD=7.37;ReadPosRankSum=1.213;SB=-1.529e+03 GT:AD:DP:GQ:PL 0/1:155,160:315:99:2353,0,2548 chrXVI 23600 . T C 7202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=340;Dels=0.00;FS=6.271;HaplotypeScore=33.3476;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.205;QD=21.18;ReadPosRankSum=2.435;SB=-3.988e+03 GT:AD:DP:GQ:PL 1/1:2,333:339:99:7202,819,0 chrXVI 23750 . C T 7678.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=28.0389;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.06;SB=-4.065e+03 GT:AD:DP:GQ:PL 1/1:0,330:333:99:7678,849,0 chrXVI 23831 . A T 8935.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.220;DP=395;Dels=0.00;FS=16.813;HaplotypeScore=35.5199;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.618;QD=22.62;ReadPosRankSum=3.339;SB=-3.591e+03 GT:AD:DP:GQ:PL 1/1:4,391:395:99:8935,990,0 chrXVI 23906 . A G 9046.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.671;DP=427;Dels=0.00;FS=21.750;HaplotypeScore=28.6626;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-0.683;QD=21.19;ReadPosRankSum=3.814;SB=-3.699e+03 GT:AD:DP:GQ:PL 1/1:5,419:427:99:9046,1058,0 chrXVI 23951 . T C 7465.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.198;DP=380;Dels=0.00;FS=14.173;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;MQRankSum=-1.200;QD=19.64;ReadPosRankSum=4.167;SB=-4.155e+03 GT:AD:DP:GQ:PL 1/1:6,372:380:99:7465,855,0 chrXVI 23952 . G A 7844.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=20.59;SB=-4.458e+03 GT:AD:DP:GQ:PL 1/1:0,379:381:99:7844,856,0 chrXVI 24044 . G A 4207.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.678;DP=463;Dels=0.00;FS=1.936;HaplotypeScore=9.5974;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=0;MQRankSum=2.293;QD=9.09;ReadPosRankSum=0.913;SB=-2.660e+03 GT:AD:DP:GQ:PL 0/1:201,262:463:99:4207,0,3012 chrXVI 24050 . G A 9153.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=463;Dels=0.00;FS=0.000;HaplotypeScore=6.8196;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.77;SB=-5.769e+03 GT:AD:DP:GQ:PL 1/1:0,461:463:99:9153,1044,0 chrXVI 24053 . A T 9609.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=471;Dels=0.00;FS=0.000;HaplotypeScore=6.8196;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.40;SB=-6.112e+03 GT:AD:DP:GQ:PL 1/1:0,471:471:99:9609,1056,0 chrXVI 24087 . C A 9104.01 filter AC=2;AF=1.00;AN=2;DP=483;Dels=0.00;FS=0.000;HaplotypeScore=27.9774;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.85;SB=-6.103e+03 GT:AD:DP:GQ:PL 1/1:0,476:483:99:9104,1002,0 chrXVI 24125 . G A 8848.01 filter AC=2;AF=1.00;AN=2;DP=441;Dels=0.00;FS=0.000;HaplotypeScore=4.1650;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=20.06;SB=-5.707e+03 GT:AD:DP:GQ:PL 1/1:0,441:441:99:8848,984,0 chrXVI 24149 . G A 9009.01 filter AC=2;AF=1.00;AN=2;DP=444;Dels=0.00;FS=0.000;HaplotypeScore=5.5678;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=20.29;SB=-5.185e+03 GT:AD:DP:GQ:PL 1/1:0,443:444:99:9009,993,0 chrXVI 24159 . T C 8233.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=414;Dels=0.00;FS=7.057;HaplotypeScore=10.2017;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=0.116;QD=19.89;ReadPosRankSum=2.402;SB=-4.542e+03 GT:AD:DP:GQ:PL 1/1:2,412:414:99:8233,942,0 chrXVI 24416 . A G 5940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=306;Dels=0.00;FS=3.024;HaplotypeScore=7.8838;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=1.559;QD=19.41;ReadPosRankSum=2.409;SB=-3.752e+03 GT:AD:DP:GQ:PL 1/1:2,301:306:99:5940,681,0 chrXVI 24422 . G A 5887.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=19.49;SB=-3.847e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:5887,642,0 chrXVI 24494 . A G 2209.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;DP=301;Dels=0.00;FS=6.992;HaplotypeScore=21.3181;MLEAC=1;MLEAF=0.500;MQ=50.07;MQ0=0;MQRankSum=-0.884;QD=7.34;ReadPosRankSum=-0.851;SB=-1.348e+03 GT:AD:DP:GQ:PL 0/1:143,154:301:99:2239,0,1881 chrXVI 24522 . T A 2249.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.098;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=1;MLEAF=0.500;MQ=49.10;MQ0=0;MQRankSum=-0.899;QD=7.95;ReadPosRankSum=0.971;SB=-1.254e+03 GT:AD:DP:GQ:PL 0/1:135,148:283:99:2279,0,1979 chrXVI 24524 . T C 1690.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.949;DP=282;Dels=0.00;FS=2.011;HaplotypeScore=3.9322;MLEAC=1;MLEAF=0.500;MQ=48.75;MQ0=0;MQRankSum=2.671;QD=5.99;ReadPosRankSum=-0.400;SB=-1.057e+03 GT:AD:DP:GQ:PL 0/1:151,131:282:99:1720,0,2277 chrXVI 24530 . T C 4960.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=278;Dels=0.00;FS=11.071;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=-0.757;QD=17.84;ReadPosRankSum=2.960;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:3,274:278:99:4960,573,0 chrXVI 24536 . T A 2140.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.535;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=0;MQRankSum=-0.489;QD=7.84;ReadPosRankSum=1.269;SB=-1.321e+03 GT:AD:DP:GQ:PL 0/1:127,146:273:99:2170,0,1755 chrXVI 24539 . T C 1522.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.097;DP=274;Dels=0.00;FS=0.931;HaplotypeScore=8.1861;MLEAC=1;MLEAF=0.500;MQ=49.21;MQ0=0;MQRankSum=2.406;QD=5.55;ReadPosRankSum=-0.380;SB=-9.830e+02 GT:AD:DP:GQ:PL 0/1:151,123:274:99:1552,0,2278 chrXVI 24572 . G A 5113.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=18.66;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:0,270:274:99:5113,561,0 chrXVI 24614 . A G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.816;DP=218;Dels=0.00;FS=7.825;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=-0.328;QD=20.07;ReadPosRankSum=3.780;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:5,212:217:99:4375,504,0 chrXVI 24629 . A G 1605.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.325;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=49.48;MQ0=0;MQRankSum=3.022;QD=7.30;ReadPosRankSum=0.638;SB=-6.040e+02 GT:AD:DP:GQ:PL 0/1:116,104:220:99:1635,0,1992 chrXVI 24634 . A G 1457.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;DP=216;Dels=0.00;FS=0.523;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=49.11;MQ0=0;MQRankSum=-1.347;QD=6.75;ReadPosRankSum=0.711;SB=-7.240e+02 GT:AD:DP:GQ:PL 0/1:110,106:216:99:1487,0,1847 chrXVI 24645 . G A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=21.26;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4018,447,0 chrXVI 24708 . C T 2176.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.973;DP=232;Dels=0.00;FS=8.444;HaplotypeScore=18.1397;MLEAC=1;MLEAF=0.500;MQ=50.48;MQ0=0;MQRankSum=4.683;QD=9.38;ReadPosRankSum=-0.695;SB=-9.070e+02 GT:AD:DP:GQ:PL 0/1:109,122:232:99:2206,0,1884 chrXVI 24809 . T C 2113.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.701;DP=239;Dels=0.00;FS=3.041;HaplotypeScore=10.6060;MLEAC=1;MLEAF=0.500;MQ=48.65;MQ0=0;MQRankSum=-8.631;QD=8.84;ReadPosRankSum=-0.869;SB=-7.690e+02 GT:AD:DP:GQ:PL 0/1:117,122:239:99:2143,0,2186 chrXVI 24844 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=202;Dels=0.00;FS=5.394;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.090;QD=21.95;ReadPosRankSum=2.846;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4433,521,0 chrXVI 24847 . G T 1538.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.439;DP=203;Dels=0.00;FS=6.013;HaplotypeScore=9.6489;MLEAC=1;MLEAF=0.500;MQ=51.15;MQ0=0;MQRankSum=-6.842;QD=7.58;ReadPosRankSum=-0.479;SB=-8.290e+02 GT:AD:DP:GQ:PL 0/1:105,97:203:99:1568,0,1759 chrXVI 24872 . A G 1808.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.942;DP=192;Dels=0.00;FS=0.533;HaplotypeScore=6.4873;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=0;MQRankSum=7.402;QD=9.42;ReadPosRankSum=-0.597;SB=-8.960e+02 GT:AD:DP:GQ:PL 0/1:89,101:192:99:1838,0,1426 chrXVI 24885 . T C 1158.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.973;DP=178;Dels=0.00;FS=3.412;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=50.40;MQ0=0;MQRankSum=-6.045;QD=6.51;ReadPosRankSum=-0.493;SB=-7.280e+02 GT:AD:DP:GQ:PL 0/1:86,90:178:99:1188,0,1562 chrXVI 24903 . G A 1299.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.011;DP=208;Dels=0.00;FS=6.694;HaplotypeScore=6.3272;MLEAC=1;MLEAF=0.500;MQ=48.15;MQ0=0;MQRankSum=-8.840;QD=6.25;ReadPosRankSum=-1.386;SB=-8.470e+02 GT:AD:DP:GQ:PL 0/1:97,111:208:99:1329,0,1748 chrXVI 24945 . T C 887.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.848;DP=220;Dels=0.00;FS=1.061;HaplotypeScore=88.1881;MLEAC=1;MLEAF=0.500;MQ=49.49;MQ0=0;MQRankSum=-11.878;QD=4.03;ReadPosRankSum=4.545;SB=-6.460e+02 GT:AD:DP:GQ:PL 0/1:131,89:220:99:917,0,2573 chrXVI 24947 . A T 858.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=91.2881;MLEAC=1;MLEAF=0.500;MQ=49.79;MQ0=0;MQRankSum=-12.364;QD=3.80;ReadPosRankSum=4.681;SB=-6.810e+02 GT:AD:DP:GQ:PL 0/1:137,89:226:99:888,0,2691 chrXVI 24950 . G A 3337.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.6493;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-0.410;QD=14.57;ReadPosRankSum=1.261;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:3337,343,0 chrXVI 24954 . T C 830.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;DP=228;Dels=0.00;FS=1.072;HaplotypeScore=11.0719;MLEAC=1;MLEAF=0.500;MQ=50.04;MQ0=0;MQRankSum=-12.402;QD=3.64;ReadPosRankSum=4.111;SB=-5.850e+02 GT:AD:DP:GQ:PL 0/1:143,85:228:99:860,0,2582 chrXVI 24956 . C T 884.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.001;DP=227;Dels=0.00;FS=1.680;HaplotypeScore=14.6638;MLEAC=1;MLEAF=0.500;MQ=49.99;MQ0=0;MQRankSum=-12.382;QD=3.89;ReadPosRankSum=3.361;SB=-6.080e+02 GT:AD:DP:GQ:PL 0/1:142,85:227:99:914,0,2633 chrXVI 24957 . T C 844.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;DP=231;Dels=0.00;FS=2.360;HaplotypeScore=14.7185;MLEAC=1;MLEAF=0.500;MQ=49.92;MQ0=0;MQRankSum=-12.128;QD=3.65;ReadPosRankSum=3.059;SB=-5.790e+02 GT:AD:DP:GQ:PL 0/1:144,85:231:99:874,0,2580 chrXVI 24966 . A T 1031.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.439;DP=290;Dels=0.00;FS=9.208;HaplotypeScore=23.2552;MLEAC=1;MLEAF=0.500;MQ=47.10;MQ0=0;MQRankSum=-13.784;QD=3.56;ReadPosRankSum=-3.949;SB=-9.230e+02 GT:AD:DP:GQ:PL 0/1:149,140:289:99:1061,0,2870 chrXVI 24974 . G T 1091.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.481;DP=303;Dels=0.00;FS=4.550;HaplotypeScore=138.1533;MLEAC=1;MLEAF=0.500;MQ=47.46;MQ0=0;MQRankSum=-14.001;QD=3.60;ReadPosRankSum=-4.733;SB=-9.930e+02 GT:AD:DP:GQ:PL 0/1:155,147:303:99:1121,0,2834 chrXVI 24980 . A T 957.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;DP=311;Dels=0.00;FS=6.861;HaplotypeScore=144.2931;MLEAC=1;MLEAF=0.500;MQ=47.73;MQ0=0;MQRankSum=-14.314;QD=3.08;ReadPosRankSum=-3.584;SB=-1.060e+03 GT:AD:DP:GQ:PL 0/1:165,146:311:99:987,0,3293 chrXVI 25057 . G A 1013.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.194;DP=257;Dels=0.00;FS=12.559;HaplotypeScore=12.5095;MLEAC=1;MLEAF=0.500;MQ=50.37;MQ0=0;MQRankSum=-9.638;QD=3.94;ReadPosRankSum=-1.718;SB=-7.270e+02 GT:AD:DP:GQ:PL 0/1:130,126:257:99:1043,0,2326 chrXVI 25069 . T C 1039.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.860;DP=243;Dels=0.00;FS=10.802;HaplotypeScore=6.5724;MLEAC=1;MLEAF=0.500;MQ=49.55;MQ0=0;MQRankSum=-10.429;QD=4.28;ReadPosRankSum=-2.117;SB=-6.230e+02 GT:AD:DP:GQ:PL 0/1:118,123:242:99:1069,0,2418 chrXVI 25075 . A G 1180.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.917;DP=242;Dels=0.00;FS=14.570;HaplotypeScore=6.5724;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=0;MQRankSum=-10.004;QD=4.88;ReadPosRankSum=-1.310;SB=-6.820e+02 GT:AD:DP:GQ:PL 0/1:117,125:242:99:1210,0,2400 chrXVI 25078 . T C 1035.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;DP=244;Dels=0.00;FS=8.279;HaplotypeScore=5.8384;MLEAC=1;MLEAF=0.500;MQ=49.46;MQ0=0;MQRankSum=-10.544;QD=4.24;ReadPosRankSum=-0.309;SB=-7.790e+02 GT:AD:DP:GQ:PL 0/1:119,124:244:99:1065,0,2329 chrXVI 25079 . G A 1059.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.812;DP=244;Dels=0.00;FS=9.233;HaplotypeScore=5.7837;MLEAC=1;MLEAF=0.500;MQ=49.35;MQ0=0;MQRankSum=-10.717;QD=4.34;ReadPosRankSum=0.014;SB=-8.010e+02 GT:AD:DP:GQ:PL 0/1:119,124:244:99:1089,0,2147 chrXVI 25149 . C T 1604.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.955;DP=217;Dels=0.00;FS=3.852;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=-6.314;QD=7.39;ReadPosRankSum=-1.748;SB=-9.180e+02 GT:AD:DP:GQ:PL 0/1:106,108:217:99:1634,0,1860 chrXVI 25188 . A C 2132.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.527;DP=233;Dels=0.00;FS=4.429;HaplotypeScore=13.7436;MLEAC=1;MLEAF=0.500;MQ=52.78;MQ0=0;MQRankSum=7.158;QD=9.15;ReadPosRankSum=0.168;SB=-9.520e+02 GT:AD:DP:GQ:PL 0/1:111,122:233:99:2162,0,1711 chrXVI 25194 . A G 1438.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.128;DP=232;Dels=0.00;FS=4.479;HaplotypeScore=6.4873;MLEAC=1;MLEAF=0.500;MQ=52.47;MQ0=0;MQRankSum=-5.788;QD=6.20;ReadPosRankSum=0.555;SB=-9.260e+02 GT:AD:DP:GQ:PL 0/1:123,109:232:99:1468,0,2365 chrXVI 25200 . C T 1547.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.706;DP=233;Dels=0.00;FS=4.543;HaplotypeScore=12.3029;MLEAC=1;MLEAF=0.500;MQ=52.17;MQ0=0;MQRankSum=-7.552;QD=6.64;ReadPosRankSum=1.109;SB=-1.065e+03 GT:AD:DP:GQ:PL 0/1:123,109:233:99:1577,0,2182 chrXVI 25209 . T G 1429.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;DP=238;Dels=0.00;FS=0.479;HaplotypeScore=11.5266;MLEAC=1;MLEAF=0.500;MQ=52.12;MQ0=0;MQRankSum=-6.720;QD=6.00;ReadPosRankSum=1.813;SB=-8.760e+02 GT:AD:DP:GQ:PL 0/1:123,113:238:99:1459,0,2258 chrXVI 25269 . T C 1737.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.483;DP=233;Dels=0.00;FS=8.837;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=51.50;MQ0=0;MQRankSum=-6.684;QD=7.45;ReadPosRankSum=0.715;SB=-6.280e+02 GT:AD:DP:GQ:PL 0/1:111,122:233:99:1767,0,2001 chrXVI 25407 . G A 1976.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.818;DP=223;Dels=0.00;FS=0.501;HaplotypeScore=18.0302;MLEAC=1;MLEAF=0.500;MQ=55.72;MQ0=0;MQRankSum=-1.676;QD=8.86;ReadPosRankSum=-2.292;SB=-8.150e+02 GT:AD:DP:GQ:PL 0/1:112,107:223:99:2006,0,2076 chrXVI 25413 . C T 2016.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.164;DP=215;Dels=0.00;FS=1.707;HaplotypeScore=14.8208;MLEAC=1;MLEAF=0.500;MQ=55.33;MQ0=0;MQRankSum=5.671;QD=9.38;ReadPosRankSum=2.210;SB=-9.400e+02 GT:AD:DP:GQ:PL 0/1:103,109:215:99:2046,0,1829 chrXVI 25497 . T C 5885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.457;QD=22.46;ReadPosRankSum=1.705;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,257:262:99:5885,675,0 chrXVI 25524 . A G 2500.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.982;DP=269;Dels=0.00;FS=1.498;HaplotypeScore=12.9717;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=0.950;QD=9.29;ReadPosRankSum=-0.726;SB=-1.143e+03 GT:AD:DP:GQ:PL 0/1:123,144:269:99:2530,0,2196 chrXVI 25566 . T C 5761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=271;Dels=0.00;FS=8.651;HaplotypeScore=15.0885;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=1.752;QD=21.26;ReadPosRankSum=3.429;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:4,265:271:99:5761,663,0 chrXVI 25623 . T C 2606.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.214;DP=349;Dels=0.00;FS=5.038;HaplotypeScore=17.5339;MLEAC=1;MLEAF=0.500;MQ=54.99;MQ0=0;MQRankSum=-2.368;QD=7.47;ReadPosRankSum=-0.027;SB=-1.082e+03 GT:AD:DP:GQ:PL 0/1:166,182:349:99:2636,0,3052 chrXVI 25632 . A G 7458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=357;Dels=0.00;FS=9.254;HaplotypeScore=30.1528;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.644;QD=20.89;ReadPosRankSum=2.422;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:2,354:357:99:7458,852,0 chrXVI 25667 . G A 2727.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.731;DP=403;Dels=0.00;FS=2.126;HaplotypeScore=22.4274;MLEAC=1;MLEAF=0.500;MQ=53.56;MQ0=0;MQRankSum=-1.294;QD=6.77;ReadPosRankSum=2.146;SB=-1.470e+03 GT:AD:DP:GQ:PL 0/1:197,204:403:99:2757,0,3551 chrXVI 25680 . C T 2835.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.689;DP=409;Dels=0.00;FS=3.209;HaplotypeScore=17.0651;MLEAC=1;MLEAF=0.500;MQ=52.02;MQ0=0;MQRankSum=-2.966;QD=6.93;ReadPosRankSum=0.172;SB=-1.471e+03 GT:AD:DP:GQ:PL 0/1:199,207:409:99:2865,0,3621 chrXVI 25716 . C T 3492.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.464;DP=363;Dels=0.00;FS=4.633;HaplotypeScore=16.8459;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=0;MQRankSum=-0.850;QD=9.62;ReadPosRankSum=1.804;SB=-1.660e+03 GT:AD:DP:GQ:PL 0/1:176,185:363:99:3492,0,2743 chrXVI 25737 . C T 3218.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.752;DP=343;Dels=0.00;FS=18.950;HaplotypeScore=23.6290;MLEAC=1;MLEAF=0.500;MQ=49.96;MQ0=0;MQRankSum=-1.453;QD=9.38;ReadPosRankSum=0.121;SB=-1.476e+03 GT:AD:DP:GQ:PL 0/1:168,174:343:99:3248,0,2409 chrXVI 26085 . A G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.156;DP=124;Dels=0.00;FS=4.892;HaplotypeScore=10.7852;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=-0.223;QD=16.58;ReadPosRankSum=3.357;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:4,118:124:99:2089,234,0 chrXVI 26114 . A G 2491 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=22.04;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2524,282,0 chrXVI 26200 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;QD=21.52;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1518,168,0 chrXVI 26204 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=21.07;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1529,165,0 chrXVI 26222 . T C 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;MQRankSum=-1.658;QD=19.61;ReadPosRankSum=2.391;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1680,192,0 chrXVI 26261 . A G 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=5.185;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=-0.192;QD=15.73;ReadPosRankSum=1.697;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1590,183,0 chrXVI 26265 . G C 1561 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=14.87;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1594,186,0 chrXVI 26289 . G A 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.01;FS=4.528;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-1.109;QD=18.39;ReadPosRankSum=-1.632;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2645,285,0 chrXVI 26330 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=15.97;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2316,258,0 chrXVI 26358 . C G 2034 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=14.96;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2067,240,0 chrXVI 26365 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=13.90;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1756,195,0 chrXVI 26373 . A G 1415 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;QD=11.60;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1448,168,0 chrXVI 26388 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;QD=11.62;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1230,141,0 chrXVI 26397 . A G 1117 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=11.76;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1150,135,0 chrXVI 26429 . T C 1605 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.504;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;MQRankSum=-0.530;QD=13.16;ReadPosRankSum=1.560;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:1638,189,0 chrXVI 26433 . T C 1565 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=12.62;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1598,192,0 chrXVI 26434 . G A 1633 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=12.96;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1666,189,0 chrXVI 26592 . T C 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;MQRankSum=-1.274;QD=21.21;ReadPosRankSum=1.681;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2918,342,0 chrXVI 26641 . A G 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=133;Dels=0.00;FS=3.538;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=0.542;QD=20.33;ReadPosRankSum=1.706;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2737,324,0 chrXVI 26688 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.36;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2403,264,0 chrXVI 26755 . T A 2332 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=1.133;QD=22.42;ReadPosRankSum=1.632;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2365,261,0 chrXVI 26758 . C T 2400 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=22.86;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2433,270,0 chrXVI 26764 . T C 2339 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.07;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2372,276,0 chrXVI 26802 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.00;FS=5.872;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=-1.575;QD=19.31;ReadPosRankSum=2.942;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2369,267,0 chrXVI 26818 . A G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-1.218;QD=17.95;ReadPosRankSum=1.678;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2367,279,0 chrXVI 26865 . C T 2512 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.89;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2545,282,0 chrXVI 26869 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.46;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2524,279,0 chrXVI 26952 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.02;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2741,309,0 chrXVI 27014 . T C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=138;Dels=0.00;FS=5.916;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.154;QD=19.83;ReadPosRankSum=2.846;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:2770,315,0 chrXVI 27022 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.49;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2957,327,0 chrXVI 27058 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.87;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2974,333,0 chrXVI 27128 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.26;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2964,330,0 chrXVI 27168 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.54;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3507,405,0 chrXVI 27460 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.983;QD=21.93;ReadPosRankSum=1.701;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2467,279,0 chrXVI 27466 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.70;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2462,270,0 chrXVI 27655 . T C 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.548;QD=21.88;ReadPosRankSum=1.701;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2549,300,0 chrXVI 27817 . G T 3194 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.03;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3227,369,0 chrXVI 27841 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=3.558;HaplotypeScore=4.1445;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.208;QD=21.08;ReadPosRankSum=1.709;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3258,387,0 chrXVI 27877 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.1062;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.72;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3269,357,0 chrXVI 27919 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.787;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-2.134;QD=20.67;ReadPosRankSum=2.317;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3092,360,0 chrXVI 27981 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.16;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3544,393,0 chrXVI 28006 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.50;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2935,348,0 chrXVI 28054 . A G 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.848;QD=19.46;ReadPosRankSum=2.378;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:2,101:106:99:2096,240,0 chrXVI 28099 . T C 2666 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.79;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2699,303,0 chrXVI 28147 . T G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.57;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3347,378,0 chrXVI 28214 . T C 2755 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=21.36;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2788,315,0 chrXVI 28237 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=20.54;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2169,243,0 chrXVI 28261 . C T 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.239;DP=98;Dels=0.00;FS=9.280;HaplotypeScore=83.2634;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-1.018;QD=18.66;ReadPosRankSum=1.420;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1862,184,0 chrXVI 28312 . C A 2457 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.98;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2490,270,0 chrXVI 28409 . G A 116.13 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=129.6944;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=0.81;SB=-9.463e+01 GT:AD:DP:GQ:PL 1/1:0,15:143:18:149,18,0 chrXVI 28513 . T A 2919 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=22.45;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2952,321,0 chrXVI 28514 . T G 2769 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=21.98;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2802,321,0 chrXVI 28521 . T G 2498 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=19.83;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2531,297,0 chrXVI 28641 . A G 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=196;Dels=0.00;FS=9.940;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.316;QD=21.85;ReadPosRankSum=2.964;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:3,191:196:99:4282,495,0 chrXVI 28674 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.57;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4056,444,0 chrXVI 28686 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.59;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3932,441,0 chrXVI 28821 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.25;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4102,465,0 chrXVI 28890 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.535;DP=196;Dels=0.00;FS=5.051;HaplotypeScore=17.5834;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.147;QD=21.43;ReadPosRankSum=0.868;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:4,190:196:99:4200,459,0 chrXVI 29021 . T C 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=6.620;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.593;QD=16.97;ReadPosRankSum=2.243;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2460,294,0 chrXVI 29036 . T C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.889;HaplotypeScore=2.1445;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;MQRankSum=-0.927;QD=16.13;ReadPosRankSum=1.561;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2324,264,0 chrXVI 29041 . T A 2210 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=15.90;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2243,258,0 chrXVI 29091 . A G 2885 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8026;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=19.23;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2918,339,0 chrXVI 29134 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=20.28;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3651,423,0 chrXVI 29156 . T G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.850;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.476;QD=18.19;ReadPosRankSum=1.713;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3311,384,0 chrXVI 29188 . A G 2788 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=17.76;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2821,344,0 chrXVI 29202 . A C 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.524;DP=158;Dels=0.00;FS=11.817;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;MQRankSum=-2.274;QD=14.84;ReadPosRankSum=3.754;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:5,152:158:99:2378,284,0 chrXVI 29222 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=17.61;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2780,324,0 chrXVI 29253 . T A 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-1.059;QD=19.72;ReadPosRankSum=1.692;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3451,399,0 chrXVI 29290 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=19.77;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3953,459,0 chrXVI 29296 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=0.875;QD=19.58;ReadPosRankSum=1.679;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3798,429,0 chrXVI 29325 . T A 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=160;Dels=0.00;FS=3.037;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=-0.837;QD=15.13;ReadPosRankSum=2.373;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2454,279,0 chrXVI 29327 . A T 2335 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=14.41;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2368,276,0 chrXVI 29370 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=15.04;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2063,237,0 chrXVI 29425 . T C 3034 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=18.17;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3067,354,0 chrXVI 29430 . C T 3149 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=18.31;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3182,360,0 chrXVI 29433 . T G 2889 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=16.89;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2922,344,0 chrXVI 29458 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.386;QD=19.06;ReadPosRankSum=0.960;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:3679,414,0 chrXVI 29562 . T A 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.554;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-1.044;QD=18.85;ReadPosRankSum=1.630;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2596,297,0 chrXVI 29582 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=18.09;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2149,246,0 chrXVI 29599 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=93.2417;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=15.87;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2001,228,0 chrXVI 29674 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0556;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.58;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2688,309,0 chrXVI 29749 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.23;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2323,255,0 chrXVI 29856 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.21;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2493,276,0 chrXVI 30029 . A G 2547 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.88;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2580,297,0 chrXVI 30031 . G T 2717 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=22.45;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2750,300,0 chrXVI 30033 . A G 2559 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.310;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.318;QD=21.32;ReadPosRankSum=1.703;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2592,297,0 chrXVI 30270 . T A 2357 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.5046;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.86;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2390,273,0 chrXVI 30443 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.932;HaplotypeScore=6.0800;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.713;QD=24.07;ReadPosRankSum=1.707;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3298,375,0 chrXVI 30747 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.46;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3347,369,0 chrXVI 30844 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=126;Dels=0.00;FS=7.737;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.903;QD=21.15;ReadPosRankSum=2.333;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2698,321,0 chrXVI 31264 . G T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.90;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3888,447,0 chrXVI 32078 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.33;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3990,441,0 chrXVI 33006 . C T 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.815;QD=24.75;ReadPosRankSum=1.019;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2558,282,0 chrXVI 33642 . A T 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=132;Dels=0.00;FS=5.763;HaplotypeScore=14.4852;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.916;QD=21.61;ReadPosRankSum=2.932;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2886,321,0 chrXVI 33753 . T C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=4.063;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.206;QD=20.15;ReadPosRankSum=1.688;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1625,183,0 chrXVI 33804 . T C 2528 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.18;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2561,300,0 chrXVI 33858 . A G 2040 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2073,237,0 chrXVI 33951 . T C 1955 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1988,228,0 chrXVI 34248 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.25;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2703,306,0 chrXVI 34350 . A T 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5361;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.584;QD=23.66;ReadPosRankSum=1.707;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3313,369,0 chrXVI 34401 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=6.806;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.595;QD=21.15;ReadPosRankSum=2.409;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2613,300,0 chrXVI 34470 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.01;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2996,357,0 chrXVI 34506 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.43;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3432,381,0 chrXVI 34641 . A G 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.185;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.378;QD=21.22;ReadPosRankSum=1.705;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2749,324,0 chrXVI 34674 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3835;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.58;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3410,393,0 chrXVI 34987 . C A 932 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=15.28;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:965,114,0 chrXVI 34989 . T C 994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=61;Dels=0.00;FS=5.254;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=-0.577;QD=16.30;ReadPosRankSum=1.672;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,56:61:99:1027,117,0 chrXVI 35005 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=16.67;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1100,126,0 chrXVI 35083 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=21.97;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1395,156,0 chrXVI 35098 . T G 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-0.192;QD=22.11;ReadPosRankSum=1.684;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1625,186,0 chrXVI 35220 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=24.32;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2222,246,0 chrXVI 35338 . T A 2285 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=18.58;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2318,258,0 chrXVI 35342 . A G 2185 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.185;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-0.259;QD=17.07;ReadPosRankSum=1.596;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2218,255,0 chrXVI 35346 . T C 2270 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-0.637;QD=16.69;ReadPosRankSum=1.681;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2303,264,0 chrXVI 35385 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=17.46;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:2862,315,0 chrXVI 35391 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.716;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-0.953;QD=16.29;ReadPosRankSum=1.710;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2640,297,0 chrXVI 35451 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.20;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2986,330,0 chrXVI 35512 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.26;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3243,369,0 chrXVI 35541 . C T 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.193;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=0.617;QD=24.12;ReadPosRankSum=0.712;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3546,402,0 chrXVI 35577 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=23.82;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3597,393,0 chrXVI 35664 . G A 2184 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=20.04;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2217,243,0 chrXVI 35667 . G A 2234 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=19.95;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2267,243,0 chrXVI 35673 . G T 2070 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=18.82;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2103,231,0 chrXVI 35711 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=19.23;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2341,255,0 chrXVI 35724 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=-0.042;QD=18.62;ReadPosRankSum=1.704;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2323,267,0 chrXVI 35760 . C T 2490 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.24;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2523,288,0 chrXVI 35776 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.62;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2569,288,0 chrXVI 35931 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.65;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2918,324,0 chrXVI 36074 . T C 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=5.332;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-1.452;QD=21.76;ReadPosRankSum=1.627;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2209,255,0 chrXVI 36081 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.55;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2102,240,0 chrXVI 36100 . T C 2051 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.04;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2084,240,0 chrXVI 36252 . G C 1637 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.26;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1670,192,0 chrXVI 36274 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.70;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1849,213,0 chrXVI 36315 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.91;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2114,234,0 chrXVI 36342 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.28;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2439,267,0 chrXVI 36372 . G A 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.7135;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.378;QD=20.01;ReadPosRankSum=0.221;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2715,284,0 chrXVI 36468 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.50;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3337,369,0 chrXVI 36549 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.40;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3684,402,0 chrXVI 36627 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.20;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4083,456,0 chrXVI 36714 . A G 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=3.247;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.946;QD=23.57;ReadPosRankSum=1.682;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4903,558,0 chrXVI 36818 . G A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.83;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3884,423,0 chrXVI 36977 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.67;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:3003,327,0 chrXVI 37078 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.14;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3980,435,0 chrXVI 37088 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.13;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3654,408,0 chrXVI 37233 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.25;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3671,435,0 chrXVI 37347 . A C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=172;Dels=0.00;FS=2.993;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.984;QD=21.99;ReadPosRankSum=2.378;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3782,432,0 chrXVI 37356 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6435;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=1.214;QD=22.05;ReadPosRankSum=1.712;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3837,432,0 chrXVI 37424 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=19.08;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3067,342,0 chrXVI 37447 . C A 2791 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=18.24;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2824,318,0 chrXVI 37452 . T A 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=156;Dels=0.00;FS=11.525;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;MQRankSum=-1.123;QD=17.16;ReadPosRankSum=2.891;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:2710,306,0 chrXVI 37477 . T C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.885;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;MQRankSum=-0.645;QD=16.08;ReadPosRankSum=1.606;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2236,252,0 chrXVI 37482 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=13.54;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1888,231,0 chrXVI 37527 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=16.76;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2128,246,0 chrXVI 37556 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.146;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.240;QD=14.82;ReadPosRankSum=1.679;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1960,234,0 chrXVI 37569 . C T 2094 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=15.28;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2127,237,0 chrXVI 37575 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=15.69;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2120,234,0 chrXVI 37721 . A C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.743;DP=109;Dels=0.00;FS=3.027;HaplotypeScore=5.3319;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=0.034;QD=19.64;ReadPosRankSum=2.040;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2174,252,0 chrXVI 37722 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=5.3319;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.44;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2261,252,0 chrXVI 37911 . A G 4711.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.8427;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.67;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4711,534,0 chrXVI 37953 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.59;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3682,420,0 chrXVI 38082 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.28;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4522,525,0 chrXVI 38237 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.86;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3051,348,0 chrXVI 38357 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.83;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3033,342,0 chrXVI 38388 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.09;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2877,312,0 chrXVI 38391 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.07;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2542,291,0 chrXVI 38453 . C A 2389 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.96;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2422,270,0 chrXVI 38493 . T G 2542 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.90;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2575,291,0 chrXVI 38521 . G A 2499 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.54;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2532,276,0 chrXVI 38867 . C G 1078 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=21.14;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1111,129,0 chrXVI 38894 . G A 81.26 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=2.90;SB=-1.113e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:15:114,15,0 chrXVI 38907 . G T 127.13 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=7.48;SB=-1.131e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:18:160,18,0 chrXVI 38929 . C T 183.03 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=7.32;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:24:216,24,0 chrXVI 38938 . G A 224 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=7.23;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:30:257,30,0 chrXVI 39420 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.4170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3456,399,0 chrXVI 39693 . G A 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.419;QD=22.57;ReadPosRankSum=-0.934;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3792,396,0 chrXVI 39840 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.739;DP=188;Dels=0.00;FS=16.636;HaplotypeScore=14.3570;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.188;QD=20.43;ReadPosRankSum=3.739;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:5,182:188:99:3840,455,0 chrXVI 40351 . G A 4420.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.02;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4420,480,0 chrXVI 40527 . G A 4613.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.96;MQ0=0;QD=22.61;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4613,525,0 chrXVI 40910 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=4.518;HaplotypeScore=10.9243;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.670;QD=23.44;ReadPosRankSum=1.709;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3563,411,0 chrXVI 40950 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.02;FS=0.000;HaplotypeScore=9.8168;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.88;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3698,408,0 chrXVI 40976 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=153;Dels=0.00;FS=2.815;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=0.554;QD=18.65;ReadPosRankSum=2.385;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2887,333,0 chrXVI 40996 . T C 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=0.079;QD=18.06;ReadPosRankSum=1.664;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2796,324,0 chrXVI 41008 . G C 2500 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=136.2240;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=16.78;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2533,291,0 chrXVI 41075 . C T 4611.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.01;FS=0.000;HaplotypeScore=25.4750;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.25;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4611,522,0 chrXVI 41264 . T C 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=218;Dels=0.00;FS=3.299;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.127;QD=20.15;ReadPosRankSum=1.684;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4392,518,0 chrXVI 41286 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=217;Dels=0.00;FS=10.104;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-2.428;QD=19.29;ReadPosRankSum=2.930;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:4186,474,0 chrXVI 41379 . T A 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=3.137;HaplotypeScore=9.8913;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.733;QD=21.77;ReadPosRankSum=1.699;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4528,498,0 chrXVI 41399 . G T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.64;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4204,474,0 chrXVI 42125 . G T 5588.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.38;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5588,621,0 chrXVI 42254 . A G 4947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.665;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.4937;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.589;QD=21.70;ReadPosRankSum=-0.351;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,225:228:99:4947,535,0 chrXVI 42374 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.50;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4343,498,0 chrXVI 42377 . T C 4238.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.51;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4238,480,0 chrXVI 42781 . T G 1986 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.83;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2019,231,0 chrXVI 42883 . C A 1351 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.52;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1384,156,0 chrXVI 43061 . G A 668 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.86;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:78:701,78,0 chrXVI 43074 . C A 559 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.29;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:66:592,66,0 chrXVI 43601 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5417;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3737,426,0 chrXVI 43754 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.45;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3477,393,0 chrXVI 43802 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.84;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3756,408,0 chrXVI 43865 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.3401;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.82;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3000,342,0 chrXVI 43958 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.72;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3817,429,0 chrXVI 44051 . A C 2798 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=18.91;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2831,321,0 chrXVI 44063 . T A 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.878;QD=21.51;ReadPosRankSum=1.708;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3088,339,0 chrXVI 44093 . T A 2741 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.01;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2774,306,0 chrXVI 44122 . G T 2676 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.3319;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.33;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2709,294,0 chrXVI 44191 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.18;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3232,357,0 chrXVI 44258 . A G 2638 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.36;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2671,309,0 chrXVI 44377 . T G 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=4.184;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.046;QD=18.74;ReadPosRankSum=1.687;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1476,171,0 chrXVI 44552 . T C 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.766;QD=20.98;ReadPosRankSum=2.400;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2089,240,0 chrXVI 44755 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.73;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3611,411,0 chrXVI 44764 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=189;Dels=0.00;FS=2.832;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.123;QD=18.61;ReadPosRankSum=2.333;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3517,419,0 chrXVI 44799 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.6919;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.02;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3443,378,0 chrXVI 44845 . G C 2432 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.46;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2465,285,0 chrXVI 44920 . C G 2766 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=15.90;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2799,336,0 chrXVI 44929 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=17.22;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3064,339,0 chrXVI 45121 . C T 4265.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.83;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4265,480,0 chrXVI 45265 . G T 2982 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.62;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3015,333,0 chrXVI 45292 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.08;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2704,297,0 chrXVI 45800 . G T 1780 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.45;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1813,198,0 chrXVI 45974 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=136;Dels=0.00;FS=7.911;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.099;QD=22.90;ReadPosRankSum=2.395;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3148,354,0 chrXVI 46114 . C A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.5733;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.81;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3718,411,0 chrXVI 46273 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.753;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.000;QD=20.78;ReadPosRankSum=1.707;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2942,333,0 chrXVI 46282 . T C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=143;Dels=0.00;FS=8.141;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.388;QD=19.57;ReadPosRankSum=3.372;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:4,138:143:99:2832,318,0 chrXVI 46291 . A G 2477 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.08;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2510,294,0 chrXVI 46435 . T C 2813 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.24;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2846,318,0 chrXVI 46547 . A G 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=0.715;QD=14.42;ReadPosRankSum=1.694;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1360,159,0 chrXVI 46551 . G T 1434 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=15.42;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1467,159,0 chrXVI 46637 . A G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=128;Dels=0.00;FS=7.314;HaplotypeScore=7.3221;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.675;QD=18.93;ReadPosRankSum=2.392;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2456,282,0 chrXVI 46831 . A G 2015 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=13.00;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2048,246,0 chrXVI 46871 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.93;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3443,375,0 chrXVI 46921 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.617;DP=143;Dels=0.00;FS=11.733;HaplotypeScore=26.2097;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.711;QD=20.84;ReadPosRankSum=3.729;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:5,136:143:99:3013,357,0 chrXVI 47067 . T C 2521 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=20.6836;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.01;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2554,288,0 chrXVI 47208 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.29;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2268,255,0 chrXVI 47273 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2715,309,0 chrXVI 47325 . G T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.59;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3704,423,0 chrXVI 47566 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.59;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3390,384,0 chrXVI 48262 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.732;QD=19.09;ReadPosRankSum=1.714;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3569,428,0 chrXVI 48265 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.894;QD=19.75;ReadPosRankSum=1.695;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3673,417,0 chrXVI 48893 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.49;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1967,222,0 chrXVI 48911 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.79;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1913,207,0 chrXVI 48928 . T A 1856 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.96;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1889,207,0 chrXVI 49046 . A G 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=6.578;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.318;QD=19.17;ReadPosRankSum=2.394;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1739,201,0 chrXVI 49049 . T C 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=91;Dels=0.00;FS=3.005;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.424;QD=19.21;ReadPosRankSum=2.286;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1781,201,0 chrXVI 49169 . T A 1939 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0227;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.08;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1972,222,0 chrXVI 50572 . A T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.66;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3430,384,0 chrXVI 50846 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.130;DP=123;Dels=0.00;FS=8.953;HaplotypeScore=9.1977;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.235;QD=21.20;ReadPosRankSum=2.745;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2640,300,0 chrXVI 50873 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.82;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2499,273,0 chrXVI 50886 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.06;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2001,240,0 chrXVI 50941 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=15.65;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1535,171,0 chrXVI 50951 . A C 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.919;QD=15.37;ReadPosRankSum=1.661;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1555,189,0 chrXVI 50992 . A T 1586 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.44;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1619,177,0 chrXVI 51000 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.65;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1723,195,0 chrXVI 51382 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.553;QD=21.69;ReadPosRankSum=1.702;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2592,291,0 chrXVI 51430 . C T 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6316;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.448;QD=21.27;ReadPosRankSum=1.562;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2628,276,0 chrXVI 51466 . A G 2430 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.13;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2463,279,0 chrXVI 51469 . C A 2589 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.07;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2622,285,0 chrXVI 51714 . C A 2709 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.85;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2742,300,0 chrXVI 51889 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.04;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2870,321,0 chrXVI 52021 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.2659;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.54;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3696,414,0 chrXVI 52066 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.1999;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.49;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3868,432,0 chrXVI 52180 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3153,354,0 chrXVI 52231 . G A 2862 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.20;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2895,327,0 chrXVI 52375 . A C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=3.643;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.615;QD=21.26;ReadPosRankSum=1.673;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2542,297,0 chrXVI 52500 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2751,303,0 chrXVI 52881 . C T 1338 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.93;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1371,150,0 chrXVI 52883 . C T 1329 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.53;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1362,153,0 chrXVI 52889 . G T 1242 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=23.43;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1275,138,0 chrXVI 53017 . C G 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.150;QD=21.85;ReadPosRankSum=-0.321;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1825,213,0 chrXVI 53084 . A T 101.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.619;DP=20;Dels=0.00;FS=2.128;HaplotypeScore=11.4953;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.289;QD=5.06;ReadPosRankSum=-1.856;SB=-9.300e+01 GT:AD:DP:GQ:PL 1/1:6,14:20:18:134,18,0 chrXVI 53137 . C A 1341 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=21.98;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1374,150,0 chrXVI 53183 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=19.36;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1504,168,0 chrXVI 53226 . G A 1006 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=22.86;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1039,117,0 chrXVI 53320 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=23.12;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1721,186,0 chrXVI 53348 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=19.18;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1663,189,0 chrXVI 53378 . A G 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;MQRankSum=-0.654;QD=16.46;ReadPosRankSum=1.694;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1514,174,0 chrXVI 53381 . T C 1532 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=16.47;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1565,183,0 chrXVI 53407 . A T 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=2.762;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;MQRankSum=0.234;QD=14.13;ReadPosRankSum=2.388;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1149,135,0 chrXVI 53425 . A T 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=3.059;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;MQRankSum=0.014;QD=14.09;ReadPosRankSum=2.395;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1301,147,0 chrXVI 53429 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=15.10;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1362,153,0 chrXVI 53499 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.92;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3659,411,0 chrXVI 53686 . C G 4910.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.4756;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.02;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:4910,552,0 chrXVI 53867 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=174;Dels=0.00;FS=2.839;HaplotypeScore=19.1274;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.774;QD=21.82;ReadPosRankSum=2.407;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3797,429,0 chrXVI 53945 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3495,384,0 chrXVI 54119 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.88;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2755,303,0 chrXVI 54725 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.18;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4067,459,0 chrXVI 54755 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=181;Dels=0.00;FS=2.898;HaplotypeScore=13.2054;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=2.136;QD=21.17;ReadPosRankSum=2.409;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3831,450,0 chrXVI 55257 . G T 3126 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.33;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3159,348,0 chrXVI 55327 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=2;QD=22.67;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2799,318,0 chrXVI 55382 . A C 2562 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.50;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2595,294,0 chrXVI 55474 . G A 3076 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.79;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3109,351,0 chrXVI 55562 . T A 2102 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.61;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2135,243,0 chrXVI 55625 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.79;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2408,264,0 chrXVI 55774 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.73;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2085,234,0 chrXVI 55837 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.00;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3069,345,0 chrXVI 55962 . A C 3570.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=23.49;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3570,405,0 chrXVI 56116 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;MQRankSum=-1.395;QD=18.41;ReadPosRankSum=1.714;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:3626,420,0 chrXVI 56137 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=18.61;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3178,354,0 chrXVI 56152 . T C 2030 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=8.508;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;MQRankSum=1.694;QD=15.86;ReadPosRankSum=2.392;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2063,254,0 chrXVI 56154 . G A 2114 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=16.14;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2147,243,0 chrXVI 56155 . G A 2134 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=16.54;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2167,243,0 chrXVI 56290 . T C 2157 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.26;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2190,264,0 chrXVI 56381 . A T 185.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=11.56;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:218,27,0 chrXVI 56383 . C T 155.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=9.69;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,14:16:24:188,24,0 chrXVI 56388 . C A 117.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=0;QD=13.01;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:18:150,18,0 chrXVI 56389 . G C 112.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=0;QD=12.46;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:18:145,18,0 chrXVI 56392 . G A 112.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=0;QD=11.21;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:145,18,0 chrXVI 56397 . C T 90.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=0;QD=9.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:15:123,15,0 chrXVI 56404 . C T 96.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=0;QD=10.70;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:129,15,0 chrXVI 56425 . A C 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.754;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=0;MQRankSum=1.754;QD=6.57;ReadPosRankSum=0.937;SB=-2.621e+01 GT:AD:DP:GQ:PL 1/1:4,3:7:9:78,9,0 chrXVI 62387 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.937;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=9.0890;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;MQRankSum=1.754;QD=0.81;ReadPosRankSum=-0.937;SB=1.24 GT:AD:DP:GQ:PL 1/1:4,3:21:6:49,6,0 chrXVI 62472 . T C 75.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=1;QD=5.81;SB=-4.975e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:12:108,12,0 chrXVI 62592 . G A 15.19 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=11.46;MQ0=27;MQRankSum=2.000;QD=0.37;ReadPosRankSum=0.000;SB=0.047 GT:AD:DP:GQ:PL 0/1:36,5:41:16:45,0,16 chrXVI 63107 . T C 211 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;MQRankSum=-0.792;QD=6.39;ReadPosRankSum=2.301;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:2,31:33:30:244,30,0 chrXVI 63123 . A C 283 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=7.45;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:39:316,39,0 chrXVI 63147 . A G 292 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=0;QD=7.89;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:39:325,39,0 chrXVI 63159 . A C 282 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.81;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:39:315,39,0 chrXVI 63190 . A T 179.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=12.79;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:212,24,0 chrXVI 63251 . G C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=0;QD=0.72;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:50,6,0 chrXVI 63267 . A G 422 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=8.98;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:57:455,57,0 chrXVI 63276 . A G 677 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=10.58;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:87:710,87,0 chrXVI 63292 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=14.40;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1185,141,0 chrXVI 63327 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.11;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1581,189,0 chrXVI 63378 . T A 429 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=20.43;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:462,54,0 chrXVI 63379 . T C 413 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=19.67;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:54:446,54,0 chrXVI 63398 . C T 54.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrXVI 63416 . C T 97.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=13.88;SB=-2.188e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrXVI 63455 . T C 1193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;MQRankSum=-0.309;QD=21.30;ReadPosRankSum=1.670;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1226,141,0 chrXVI 63459 . G A 1249 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=20.82;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1282,147,0 chrXVI 63473 . T C 1514 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=20.74;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1547,186,0 chrXVI 63532 . A G 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=3.010;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-1.498;QD=15.92;ReadPosRankSum=1.685;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1211,150,0 chrXVI 63549 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=17.64;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1021,123,0 chrXVI 63550 . G A 969 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=17.94;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1002,120,0 chrXVI 63565 . A G 567 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=14.92;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:600,75,0 chrXVI 63582 . C T 185.01 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=0;QD=9.74;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:218,27,0 chrXVI 63583 . A C 181.01 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=0;QD=9.53;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:214,27,0 chrXVI 63584 . C T 186.01 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=0;QD=9.79;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:219,27,0 chrXVI 63616 . A G 187.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=15.58;SB=-8.699e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:220,27,0 chrXVI 63623 . A G 237 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=14.81;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:33:270,33,0 chrXVI 63627 . G A 218 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=12.11;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:30:251,30,0 chrXVI 63657 . A G 694 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=17.79;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:727,90,0 chrXVI 63673 . T C 770 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=17.11;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:803,102,0 chrXVI 63681 . T A 848 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=17.67;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:881,108,0 chrXVI 63712 . T C 1023 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;QD=18.60;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1056,134,0 chrXVI 63723 . T A 826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=6.902;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=0;MQRankSum=-0.389;QD=16.86;ReadPosRankSum=1.591;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:859,111,0 chrXVI 63727 . T C 706 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=15.35;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:98:739,98,0 chrXVI 63738 . A G 695 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=0;QD=16.95;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:728,96,0 chrXVI 63762 . G A 535 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=0;QD=18.45;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:568,75,0 chrXVI 63812 . C T 119.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=14.88;SB=-8.656e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:152,21,0 chrXVI 63815 . T G 140.03 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=14.00;SB=-8.691e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:173,24,0 chrXVI 63823 . T A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrXVI 63825 . C A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrXVI 63827 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrXVI 63831 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrXVI 63833 . A T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrXVI 63835 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrXVI 63843 . A G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrXVI 63849 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrXVI 63850 . A G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrXVI 63853 . C G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrXVI 63854 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrXVI 63863 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63864 . A C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63865 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63868 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63870 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63872 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63877 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63883 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrXVI 63885 . A T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrXVI 63888 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrXVI 63890 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrXVI 63924 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrXVI 63946 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63951 . G T 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXVI 63966 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrXVI 63967 . A C 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrXVI 63977 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrXVI 64053 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=0.80;SB=-2.677e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:6:48,6,0 chrXVI 64086 . C T 74.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=4.66;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:107,12,0 chrXVI 64090 . G A 76.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;QD=4.78;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:109,12,0 chrXVI 64109 . A C 71.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=5.96;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:104,12,0 chrXVI 64140 . A C 123.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.68;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:156,18,0 chrXVI 64155 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=3.72;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:73,9,0 chrXVI 64165 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=3.75;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:77,9,0 chrXVI 64166 . T G 42.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=3.58;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:75,9,0 chrXVI 64204 . C T 774 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=14.88;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:807,90,0 chrXVI 64229 . G C 1033 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=13.42;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1066,126,0 chrXVI 64299 . C T 909 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=7.70;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:942,105,0 chrXVI 64309 . G T 770 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=7.33;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:90:803,90,0 chrXVI 64310 . C T 780 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=7.50;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:90:813,90,0 chrXVI 64316 . G A 747 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=6.85;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:93:780,93,0 chrXVI 64326 . T C 745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;MQRankSum=1.417;QD=7.53;ReadPosRankSum=1.697;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:93:778,93,0 chrXVI 64540 . A C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=137;Dels=0.00;FS=2.699;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;MQRankSum=0.242;QD=21.86;ReadPosRankSum=2.378;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3028,345,0 chrXVI 65675 . T A 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=176;Dels=0.00;FS=10.529;HaplotypeScore=15.6801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.354;QD=23.85;ReadPosRankSum=2.869;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:4198,462,0 chrXVI 66393 . C T 4756.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=18.7935;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.43;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4756,525,0 chrXVI 66527 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.274;QD=23.29;ReadPosRankSum=1.681;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3201,369,0 chrXVI 66703 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.23;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3069,345,0 chrXVI 66715 . C T 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.509;QD=22.39;ReadPosRankSum=-1.554;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3100,325,0 chrXVI 67491 . A G 2358 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2391,273,0 chrXVI 67558 . T C 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=130;Dels=0.00;FS=3.043;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.201;QD=20.75;ReadPosRankSum=2.412;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2731,309,0 chrXVI 68036 . C T 5482.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=25.62;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5482,597,0 chrXVI 68239 . G A 4682.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4682,507,0 chrXVI 68341 . A G 4024.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.87;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4024,465,0 chrXVI 68882 . G C 3096 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7922;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.06;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3129,369,0 chrXVI 69147 . T C 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.4978;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.710;QD=20.90;ReadPosRankSum=1.707;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2938,336,0 chrXVI 69311 . A T 2222 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.91;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2255,246,0 chrXVI 69355 . T C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=4.472;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.025;QD=20.88;ReadPosRankSum=1.661;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2079,237,0 chrXVI 69402 . T A 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=3.653;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.938;QD=21.12;ReadPosRankSum=1.700;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2335,255,0 chrXVI 69507 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.20;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3212,360,0 chrXVI 69892 . T A 2726 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2759,312,0 chrXVI 70402 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.197;QD=22.17;ReadPosRankSum=1.707;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3092,345,0 chrXVI 70567 . A C 4202.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.1761;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.88;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4202,483,0 chrXVI 70600 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.0764;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.22;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4458,498,0 chrXVI 71375 . A G 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.128;QD=20.59;ReadPosRankSum=1.659;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2010,231,0 chrXVI 71473 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.37;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1989,228,0 chrXVI 71589 . T G 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.507;QD=21.44;ReadPosRankSum=1.690;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1791,210,0 chrXVI 71807 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2169,237,0 chrXVI 72115 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.212;QD=22.66;ReadPosRankSum=1.697;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2254,270,0 chrXVI 72392 . G A 3893.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.71;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3893,441,0 chrXVI 72410 . G T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.8622;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.68;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3806,429,0 chrXVI 72506 . G T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.78;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4114,465,0 chrXVI 72844 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.37;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4143,447,0 chrXVI 72872 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.56;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4038,453,0 chrXVI 73338 . C G 1817 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1850,210,0 chrXVI 74040 . G C 692 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:81:725,81,0 chrXVI 74140 . G T 467 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.68;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:500,57,0 chrXVI 74327 . C T 5484.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.39;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5484,609,0 chrXVI 74884 . G C 2830 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.21;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2863,327,0 chrXVI 74885 . C T 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.628;QD=20.64;ReadPosRankSum=-1.732;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2881,330,0 chrXVI 74937 . C A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2578;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.38;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4074,450,0 chrXVI 75355 . A G 6204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=255;Dels=0.00;FS=7.916;HaplotypeScore=9.6264;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.712;QD=24.33;ReadPosRankSum=2.391;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:6204,693,0 chrXVI 75694 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=13.2182;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.42;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2499,282,0 chrXVI 75760 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.93;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3303,363,0 chrXVI 75921 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.79;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3087,339,0 chrXVI 76104 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=4.599;HaplotypeScore=5.6184;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.931;QD=23.77;ReadPosRankSum=1.692;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4112,477,0 chrXVI 76135 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=4.610;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.166;QD=22.66;ReadPosRankSum=1.645;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3603,408,0 chrXVI 76310 . T C 5144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=275;Dels=0.00;FS=5.902;HaplotypeScore=7.5327;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-0.349;QD=18.71;ReadPosRankSum=2.967;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:3,270:275:99:5144,585,0 chrXVI 76316 . G T 5184.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.1066;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.85;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:5184,582,0 chrXVI 76413 . G C 4510.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.5398;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.95;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4510,516,0 chrXVI 76532 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=-0.903;QD=15.43;ReadPosRankSum=1.666;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:3257,378,0 chrXVI 76538 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=16.48;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3412,381,0 chrXVI 76581 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=217;Dels=0.00;FS=2.467;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=0.329;QD=14.67;ReadPosRankSum=2.920;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:3,211:217:99:3216,375,0 chrXVI 76639 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.410;DP=178;Dels=0.00;FS=8.472;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=0.702;QD=19.79;ReadPosRankSum=3.410;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3522,417,0 chrXVI 76655 . G C 3541.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.2376;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.72;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3541,402,0 chrXVI 76657 . A C 3365.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.5770;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.27;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3365,387,0 chrXVI 76708 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.38;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3955,435,0 chrXVI 76804 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.05;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3211,360,0 chrXVI 76822 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.19;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3417,375,0 chrXVI 76987 . T C 3773.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.96;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3773,420,0 chrXVI 77082 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.65;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3788,417,0 chrXVI 77183 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.63;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3086,339,0 chrXVI 77239 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.13;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2941,330,0 chrXVI 77440 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.760;HaplotypeScore=5.0622;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.370;QD=18.96;ReadPosRankSum=1.660;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2782,335,0 chrXVI 77452 . A G 3076 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.78;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3109,351,0 chrXVI 77509 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.38;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2706,303,0 chrXVI 77995 . T G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.912;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.597;QD=21.81;ReadPosRankSum=1.705;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2825,318,0 chrXVI 78895 . C G 3197 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.63;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3230,392,0 chrXVI 79103 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=19.84;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3929,432,0 chrXVI 79182 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.540;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=-1.164;QD=13.32;ReadPosRankSum=1.713;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:2470,294,0 chrXVI 79268 . C A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.33;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4082,441,0 chrXVI 79391 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=21.45;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2865,318,0 chrXVI 79425 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=7.5080;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.260;QD=20.85;ReadPosRankSum=1.706;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2806,333,0 chrXVI 79518 . A G 1811 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=20.35;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1844,207,0 chrXVI 79588 . A G 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=95;Dels=0.00;FS=6.160;HaplotypeScore=8.5434;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.181;QD=20.67;ReadPosRankSum=2.884;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1997,225,0 chrXVI 79670 . T A 3188 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.10;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3221,366,0 chrXVI 79687 . G T 3141 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.12;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3174,351,0 chrXVI 79722 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.448;DP=145;Dels=0.00;FS=2.586;HaplotypeScore=11.5572;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.350;QD=20.40;ReadPosRankSum=1.860;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2991,336,0 chrXVI 79797 . C T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.79;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4289,474,0 chrXVI 79913 . T C 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=197;Dels=0.00;FS=3.023;HaplotypeScore=14.5802;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.278;QD=20.07;ReadPosRankSum=2.325;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:3954,456,0 chrXVI 79964 . T G 5144.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.3531;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.56;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5144,591,0 chrXVI 79994 . C T 5686.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.20;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5686,627,0 chrXVI 80286 . T C 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=221;Dels=0.00;FS=5.040;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.487;QD=20.51;ReadPosRankSum=1.684;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,216:221:99:4533,542,0 chrXVI 80417 . A G 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=2.866;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.198;QD=20.27;ReadPosRankSum=2.386;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3175,360,0 chrXVI 80419 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.99;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3091,348,0 chrXVI 80482 . A G 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.956;QD=18.68;ReadPosRankSum=1.704;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2368,270,0 chrXVI 80580 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.71;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4126,459,0 chrXVI 80748 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.87;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3888,441,0 chrXVI 80772 . A C 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.007;QD=21.58;ReadPosRankSum=2.391;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3626,414,0 chrXVI 80834 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=150;Dels=0.00;FS=5.830;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.013;QD=21.99;ReadPosRankSum=2.900;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3298,375,0 chrXVI 80857 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.367;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.934;QD=23.08;ReadPosRankSum=1.687;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3508,402,0 chrXVI 80890 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.40;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3696,417,0 chrXVI 80908 . A G 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.133;QD=20.29;ReadPosRankSum=1.710;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3198,363,0 chrXVI 80992 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=3.823;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.570;QD=18.87;ReadPosRankSum=1.711;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3127,360,0 chrXVI 81006 . C T 3362.01 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=20.38;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3362,372,0 chrXVI 81007 . A G 3168 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=19.08;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3201,375,0 chrXVI 81010 . T A 3322.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-1.107;QD=18.15;ReadPosRankSum=1.694;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3322,384,0 chrXVI 81079 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.601;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-1.254;QD=21.70;ReadPosRankSum=1.713;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3927,450,0 chrXVI 81157 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=15.6327;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.50;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3443,378,0 chrXVI 81248 . C T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.7355;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.08;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4238,462,0 chrXVI 81369 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.71;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4202,477,0 chrXVI 81416 . G T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.30;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3679,405,0 chrXVI 81459 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.5244;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.06;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3574,402,0 chrXVI 81601 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.67;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3944,435,0 chrXVI 81796 . C G 6003.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=11.8772;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=22.40;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:6003,693,0 chrXVI 81999 . G A 5107.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=18.44;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5107,561,0 chrXVI 82074 . C G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=16.69;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3721,441,0 chrXVI 82186 . C A 5251.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=23.44;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5251,582,0 chrXVI 82464 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.703;QD=21.20;ReadPosRankSum=1.703;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2577,297,0 chrXVI 82826 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.14;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3355,363,0 chrXVI 82869 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.95;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3172,348,0 chrXVI 83474 . G A 4910.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.92;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4910,564,0 chrXVI 83873 . A G 5591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=260;Dels=0.00;FS=3.274;HaplotypeScore=21.1245;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.292;QD=21.50;ReadPosRankSum=1.691;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:1,255:260:99:5591,630,0 chrXVI 84641 . T C 3184 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3217,366,0 chrXVI 84812 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.350;QD=21.07;ReadPosRankSum=2.415;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3067,357,0 chrXVI 84945 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.99;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4046,459,0 chrXVI 85148 . T C 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=210;Dels=0.00;FS=3.030;HaplotypeScore=10.0261;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=1.245;QD=23.46;ReadPosRankSum=2.414;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4927,558,0 chrXVI 85327 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8458;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.79;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2889,333,0 chrXVI 85358 . T C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.983;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=0.192;QD=15.94;ReadPosRankSum=1.705;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2057,234,0 chrXVI 85364 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=16.38;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2162,240,0 chrXVI 85399 . G A 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.182;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=156.7253;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=-0.275;QD=7.05;ReadPosRankSum=1.570;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:87:787,87,0 chrXVI 85516 . A C 3696.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.0395;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.00;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3696,414,0 chrXVI 85599 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=17.44;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2841,315,0 chrXVI 85601 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=163;Dels=0.00;FS=2.541;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.348;QD=17.45;ReadPosRankSum=2.907;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:2877,324,0 chrXVI 85621 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=186;Dels=0.00;FS=2.574;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-0.832;QD=18.53;ReadPosRankSum=2.930;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3447,408,0 chrXVI 85729 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=182;Dels=0.00;FS=2.932;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.059;QD=21.44;ReadPosRankSum=2.423;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3902,441,0 chrXVI 86390 . C T 5339.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.0009;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.01;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5339,588,0 chrXVI 86437 . T C 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.652;DP=235;Dels=0.00;FS=5.593;HaplotypeScore=16.2599;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.451;QD=21.68;ReadPosRankSum=2.901;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:3,231:235:99:5095,591,0 chrXVI 86479 . A C 5294.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.02;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5294,612,0 chrXVI 86542 . T C 5522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=241;Dels=0.00;FS=2.575;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.713;QD=22.91;ReadPosRankSum=2.938;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5522,630,0 chrXVI 86653 . T C 5801.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.00;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:5801,695,0 chrXVI 86689 . T C 5641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=280;Dels=0.00;FS=11.182;HaplotypeScore=17.5113;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.076;QD=20.15;ReadPosRankSum=2.917;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:3,274:280:99:5641,674,0 chrXVI 86716 . G A 5458.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.92;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5458,612,0 chrXVI 86878 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.2278;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.97;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,137:143:99:3032,333,0 chrXVI 86905 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.60;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2752,300,0 chrXVI 87058 . G T 2702 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2735,294,0 chrXVI 87311 . A C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=23.21;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3830,429,0 chrXVI 87430 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.49;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4633,504,0 chrXVI 87434 . A G 4390.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.32;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4390,504,0 chrXVI 87500 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=172;Dels=0.00;FS=6.360;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=-0.065;QD=18.17;ReadPosRankSum=2.392;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:3158,357,0 chrXVI 87503 . T G 3096 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=18.32;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3129,354,0 chrXVI 87521 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=16.92;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2774,312,0 chrXVI 87536 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.32;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2925,318,0 chrXVI 87803 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=181;Dels=0.00;FS=3.015;HaplotypeScore=18.1904;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.794;QD=21.16;ReadPosRankSum=2.394;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,176:181:99:3830,441,0 chrXVI 87892 . A C 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=7.275;HaplotypeScore=12.1185;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.761;QD=22.93;ReadPosRankSum=2.414;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4724,540,0 chrXVI 87944 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=153;Dels=0.00;FS=10.205;HaplotypeScore=11.2697;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.106;QD=23.01;ReadPosRankSum=2.927;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3520,405,0 chrXVI 88210 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=173;Dels=0.01;FS=5.286;HaplotypeScore=31.1787;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.746;QD=22.82;ReadPosRankSum=2.959;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3948,444,0 chrXVI 88281 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.794;QD=19.54;ReadPosRankSum=1.713;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3575,405,0 chrXVI 88282 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.96;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3470,399,0 chrXVI 88336 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.11;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2786,306,0 chrXVI 88438 . T C 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=134;Dels=0.00;FS=3.027;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.997;QD=21.07;ReadPosRankSum=2.394;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2857,339,0 chrXVI 88567 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.54;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2101,231,0 chrXVI 88582 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.86;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1920,210,0 chrXVI 88600 . T C 2139 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.10;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2172,246,0 chrXVI 88778 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.67;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3252,360,0 chrXVI 88834 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=8.076;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=1.699;QD=22.68;ReadPosRankSum=2.299;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3004,345,0 chrXVI 89075 . G T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.2913;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.40;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3381,372,0 chrXVI 89089 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-0.593;QD=18.39;ReadPosRankSum=1.709;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2829,330,0 chrXVI 89101 . T G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.738;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.407;QD=18.84;ReadPosRankSum=1.709;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2840,324,0 chrXVI 89283 . T C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.732;QD=22.83;ReadPosRankSum=1.706;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3047,348,0 chrXVI 89305 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.441;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.526;QD=21.78;ReadPosRankSum=2.289;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3039,342,0 chrXVI 89899 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.479;QD=22.42;ReadPosRankSum=1.648;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2791,321,0 chrXVI 90395 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2283,246,0 chrXVI 90910 . T C 2184 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2217,252,0 chrXVI 90983 . T C 2483 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.37;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2516,291,0 chrXVI 91468 . A G 2885 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2918,348,0 chrXVI 91540 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.396;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.306;QD=23.48;ReadPosRankSum=1.642;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3616,399,0 chrXVI 91999 . T C 3070 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9346;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.57;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3103,357,0 chrXVI 92386 . T C 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.550;QD=21.66;ReadPosRankSum=1.677;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2784,318,0 chrXVI 92966 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=151;Dels=0.00;FS=6.837;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.994;QD=21.75;ReadPosRankSum=2.417;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3284,372,0 chrXVI 93017 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.95;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2726,294,0 chrXVI 93022 . T A 2639 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5493;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.78;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2672,294,0 chrXVI 93712 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=173;Dels=0.00;FS=8.132;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.410;QD=20.00;ReadPosRankSum=2.375;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:2,164:173:99:3460,416,0 chrXVI 93759 . G C 3354.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.07;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3354,387,0 chrXVI 93996 . A G 2357 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.68;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2390,273,0 chrXVI 94081 . A G 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.192;QD=23.36;ReadPosRankSum=1.697;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2346,264,0 chrXVI 94134 . A G 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=-0.875;QD=18.88;ReadPosRankSum=1.661;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1864,213,0 chrXVI 94145 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=19.63;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1878,207,0 chrXVI 94159 . T C 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=8.439;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-0.263;QD=18.25;ReadPosRankSum=2.367;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1657,198,0 chrXVI 94183 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.45;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1583,174,0 chrXVI 94218 . T C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.687;QD=20.79;ReadPosRankSum=1.687;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1613,186,0 chrXVI 94315 . T A 2409 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.33;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2442,261,0 chrXVI 94368 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.31;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1738,189,0 chrXVI 94530 . A G 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=122;Dels=0.00;FS=3.046;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.703;QD=21.89;ReadPosRankSum=1.703;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2704,306,0 chrXVI 94919 . G T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=24.06;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3681,402,0 chrXVI 95158 . T C 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=120;Dels=0.00;FS=8.778;HaplotypeScore=107.0001;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;MQRankSum=2.142;QD=16.56;ReadPosRankSum=2.409;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2020,228,0 chrXVI 95173 . C A 1801 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=15.53;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1834,207,0 chrXVI 95177 . G T 1649 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.70;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1682,186,0 chrXVI 95193 . T A 1545 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=14.31;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1578,177,0 chrXVI 95212 . G C 1283 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=12.10;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1316,150,0 chrXVI 95370 . C G 2441 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=22.60;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2474,279,0 chrXVI 95576 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.86;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2319,255,0 chrXVI 95750 . A G 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=3.098;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.693;QD=23.88;ReadPosRankSum=1.697;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2445,276,0 chrXVI 95802 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.99;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2217,252,0 chrXVI 95982 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.77;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1654,189,0 chrXVI 96091 . G C 1887 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.7208;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.20;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1920,225,0 chrXVI 96115 . T C 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.943;QD=21.11;ReadPosRankSum=1.601;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1701,192,0 chrXVI 96363 . A G 2265 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.87;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2298,261,0 chrXVI 96371 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.47;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2469,273,0 chrXVI 96475 . T A 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.641;QD=18.80;ReadPosRankSum=2.081;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2665,294,0 chrXVI 96486 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.59;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2821,321,0 chrXVI 96592 . A G 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.858;QD=19.27;ReadPosRankSum=1.701;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2191,258,0 chrXVI 96934 . T C 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=141;Dels=0.00;FS=3.235;HaplotypeScore=14.5242;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.037;QD=21.50;ReadPosRankSum=1.632;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3064,354,0 chrXVI 97162 . C T 4037.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.43;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4037,453,0 chrXVI 97252 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.327;QD=21.17;ReadPosRankSum=1.713;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3811,453,0 chrXVI 97603 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=15.74;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2000,231,0 chrXVI 97609 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=15.56;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2009,237,0 chrXVI 97663 . T C 1951 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=159;Dels=0.00;FS=3.040;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=12;MQRankSum=-1.517;QD=12.27;ReadPosRankSum=1.684;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:1984,234,0 chrXVI 97672 . T C 1973 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=155;Dels=0.00;FS=12.357;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=13;MQRankSum=-3.247;QD=12.73;ReadPosRankSum=3.309;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:5,149:155:99:2006,228,0 chrXVI 97696 . G A 2484 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=13;QD=15.72;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2517,279,0 chrXVI 97714 . C T 2459 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=14;QD=15.56;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:2492,285,0 chrXVI 97885 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.9718;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.68;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2650,303,0 chrXVI 98068 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.2312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3430,393,0 chrXVI 98320 . T C 2848 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.10;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2881,330,0 chrXVI 98464 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2730,300,0 chrXVI 98717 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2096,228,0 chrXVI 98807 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.78;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2132,234,0 chrXVI 98881 . G T 1994 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.66;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2027,225,0 chrXVI 98933 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.24;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1879,216,0 chrXVI 99018 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.10;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1978,219,0 chrXVI 99139 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.28;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2134,240,0 chrXVI 99146 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.76;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2111,234,0 chrXVI 99260 . A C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.107;QD=23.88;ReadPosRankSum=1.689;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1991,225,0 chrXVI 99582 . A C 3144 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.5819;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.28;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3177,375,0 chrXVI 99691 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.73;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4130,447,0 chrXVI 100143 . A T 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.352;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.341;QD=23.36;ReadPosRankSum=1.653;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3116,345,0 chrXVI 100432 . G T 2897 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.63;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2930,327,0 chrXVI 100535 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.45;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2884,327,0 chrXVI 100633 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3678,408,0 chrXVI 100939 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3488,396,0 chrXVI 101603 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.62;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1403,159,0 chrXVI 101698 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1552;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.18;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2096,237,0 chrXVI 101962 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=193;Dels=0.00;FS=2.801;HaplotypeScore=11.7522;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.286;QD=22.66;ReadPosRankSum=2.399;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4374,489,0 chrXVI 102244 . A C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=182;Dels=0.00;FS=5.481;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.134;QD=20.60;ReadPosRankSum=2.961;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:3749,441,0 chrXVI 102324 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=182;Dels=0.00;FS=13.826;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.517;QD=20.25;ReadPosRankSum=3.022;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:6,176:182:99:3685,423,0 chrXVI 102751 . G T 2715 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.62;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2748,312,0 chrXVI 102951 . A G 2143 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.01;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2176,258,0 chrXVI 102998 . A C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.206;QD=20.64;ReadPosRankSum=1.673;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2469,282,0 chrXVI 103007 . A C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.218;QD=17.90;ReadPosRankSum=1.703;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2217,264,0 chrXVI 103016 . A T 2265 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.83;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2298,264,0 chrXVI 103137 . A G 3106 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3139,357,0 chrXVI 103486 . C A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3815,423,0 chrXVI 103531 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3635,414,0 chrXVI 104266 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.94;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2978,330,0 chrXVI 104305 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=142;Dels=0.00;FS=2.969;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.448;QD=22.49;ReadPosRankSum=2.379;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3226,369,0 chrXVI 104333 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.02;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3315,372,0 chrXVI 104383 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=173;Dels=0.00;FS=3.638;HaplotypeScore=9.2950;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.611;QD=20.93;ReadPosRankSum=1.671;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3621,417,0 chrXVI 104443 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.60;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3628,429,0 chrXVI 104754 . T C 412 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:51:445,51,0 chrXVI 104784 . C T 432 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:51:465,51,0 chrXVI 104905 . A T 73.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.70;SB=-5.455e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:106,12,0 chrXVI 105356 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.14;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2823,309,0 chrXVI 105519 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=18.45;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1730,192,0 chrXVI 105527 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=16.98;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1612,177,0 chrXVI 105791 . G C 3200 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=19.1483;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.38;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3233,372,0 chrXVI 105817 . T A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.36;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3259,360,0 chrXVI 105874 . A G 2962 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.16;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2995,339,0 chrXVI 105972 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.61;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3369,384,0 chrXVI 106107 . A G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.144;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.735;QD=18.23;ReadPosRankSum=1.680;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2440,285,0 chrXVI 106109 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.48;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2624,294,0 chrXVI 106351 . T C 5098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=222;Dels=0.00;FS=2.882;HaplotypeScore=12.8445;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-0.561;QD=22.96;ReadPosRankSum=2.416;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:5098,588,0 chrXVI 106390 . C G 4840.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.94;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4840,572,0 chrXVI 106450 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.4913;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.03;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4806,531,0 chrXVI 106600 . G A 5830.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.1233;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.32;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5830,660,0 chrXVI 107304 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.6318;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.75;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4277,495,0 chrXVI 107496 . T C 2534 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=12.30;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:2567,291,0 chrXVI 107754 . T C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=161;Dels=0.00;FS=2.617;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.557;QD=17.40;ReadPosRankSum=2.419;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2834,333,0 chrXVI 108114 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=18.1903;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.34;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2322,261,0 chrXVI 108552 . A C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.008;DP=159;Dels=0.00;FS=7.566;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.352;QD=22.50;ReadPosRankSum=1.229;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3577,389,0 chrXVI 109062 . T A 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=4.737;HaplotypeScore=7.3840;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-1.427;QD=9.78;ReadPosRankSum=1.704;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1256,138,0 chrXVI 109598 . C G 4319.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.67;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4319,495,0 chrXVI 109629 . C T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.5870;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.69;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,203:208:99:4095,453,0 chrXVI 109647 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.47;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4049,462,0 chrXVI 110433 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3018,330,0 chrXVI 110811 . C A 5377.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.6423;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.40;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5377,591,0 chrXVI 110859 . A C 5347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.5476;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.991;QD=20.81;ReadPosRankSum=1.719;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5347,609,0 chrXVI 110901 . A G 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=251;Dels=0.00;FS=2.571;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.404;QD=19.92;ReadPosRankSum=2.948;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:3,248:251:99:5001,576,0 chrXVI 110925 . T C 4370.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=18.52;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:4370,524,0 chrXVI 111093 . T A 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.096;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.528;QD=23.33;ReadPosRankSum=1.709;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3570,387,0 chrXVI 111146 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.64;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3257,360,0 chrXVI 111342 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;DP=187;Dels=0.00;FS=1.934;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-0.606;QD=20.43;ReadPosRankSum=0.005;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:4,182:187:99:3821,397,0 chrXVI 111364 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.194;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=0.479;QD=17.76;ReadPosRankSum=-0.412;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3269,337,0 chrXVI 111372 . T G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.014;DP=177;Dels=0.00;FS=1.857;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-0.235;QD=17.05;ReadPosRankSum=2.563;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:5,172:177:99:3051,307,0 chrXVI 111390 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.8470;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=17.54;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3243,363,0 chrXVI 111550 . G A 4611.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.77;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4611,510,0 chrXVI 111924 . C T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.54;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4543,510,0 chrXVI 111979 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=191;Dels=0.00;FS=10.040;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.261;QD=21.76;ReadPosRankSum=2.878;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:3,186:191:99:4157,474,0 chrXVI 112080 . A G 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.9526;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.994;QD=22.04;ReadPosRankSum=1.713;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4078,462,0 chrXVI 112536 . T C 6044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=274;Dels=0.00;FS=9.014;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.421;QD=22.06;ReadPosRankSum=3.391;SB=-3.117e+03 GT:AD:DP:GQ:PL 1/1:4,270:274:99:6044,707,0 chrXVI 113385 . G A 4748.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.50;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4748,525,0 chrXVI 114050 . G A 5428.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=21.9381;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.02;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5428,600,0 chrXVI 114102 . G A 5911.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.65;SB=-3.358e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5911,651,0 chrXVI 114414 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.7093;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.14;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3934,432,0 chrXVI 114586 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.33;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3103,339,0 chrXVI 114774 . A T 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.250;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.7372;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.441;QD=23.80;ReadPosRankSum=2.189;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4046,447,0 chrXVI 114957 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=13.89;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2089,228,0 chrXVI 115785 . A T 2756 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.59;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2789,312,0 chrXVI 116036 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.13;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3644,408,0 chrXVI 116041 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.66;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3598,414,0 chrXVI 116082 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.88;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3538,393,0 chrXVI 116121 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1414;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.44;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3770,423,0 chrXVI 116203 . C A 2248 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.43;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2281,255,0 chrXVI 116275 . C A 2901 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=18.84;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2934,321,0 chrXVI 116481 . G A 2226 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2259,255,0 chrXVI 116628 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=5.131;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.984;QD=20.02;ReadPosRankSum=1.614;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1795,207,0 chrXVI 116642 . A G 1883 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.69;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1916,216,0 chrXVI 116725 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2700,312,0 chrXVI 116892 . A G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.166;QD=20.45;ReadPosRankSum=2.405;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2323,267,0 chrXVI 117756 . T C 3050 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.94;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3083,351,0 chrXVI 117927 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.894;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-2.065;QD=23.08;ReadPosRankSum=2.416;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3416,402,0 chrXVI 118110 . T A 3051 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3084,339,0 chrXVI 118215 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.8019;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.96;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3650,420,0 chrXVI 118252 . T C 3006 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.95;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3039,342,0 chrXVI 118501 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.61;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2205,252,0 chrXVI 118529 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.13;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1976,225,0 chrXVI 118791 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.1644;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.35;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4314,501,0 chrXVI 118838 . G C 2668 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.52;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2701,309,0 chrXVI 118864 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=8.081;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.513;QD=18.80;ReadPosRankSum=2.411;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2402,276,0 chrXVI 118878 . T C 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=142;Dels=0.00;FS=3.430;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.307;QD=19.00;ReadPosRankSum=1.658;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2731,309,0 chrXVI 119014 . G A 2615 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.54;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2648,288,0 chrXVI 119106 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.41;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3295,363,0 chrXVI 119242 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.78;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4099,450,0 chrXVI 119500 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.48;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3475,381,0 chrXVI 119623 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=139;Dels=0.00;FS=5.709;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.158;QD=20.92;ReadPosRankSum=2.948;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:3,132:139:99:2941,336,0 chrXVI 119669 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3376,375,0 chrXVI 119752 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=15.2646;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.01;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3520,390,0 chrXVI 120748 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.14;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3276,369,0 chrXVI 121553 . A T 1214 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.23;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1247,141,0 chrXVI 121557 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.61;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1249,138,0 chrXVI 121592 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.64;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1395,153,0 chrXVI 121617 . A G 1243 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.72;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1276,144,0 chrXVI 121751 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.50;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2618,303,0 chrXVI 122624 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.38;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4211,462,0 chrXVI 123134 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.5150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4079,450,0 chrXVI 123171 . A C 3864.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.42;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3864,447,0 chrXVI 123818 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=177;Dels=0.00;FS=10.529;HaplotypeScore=18.0703;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.811;QD=20.33;ReadPosRankSum=2.903;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:3598,426,0 chrXVI 124031 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.64;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3464,390,0 chrXVI 124052 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.281;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.500;QD=22.00;ReadPosRankSum=1.709;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3278,378,0 chrXVI 124079 . A T 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=148;Dels=0.00;FS=6.412;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.785;QD=22.14;ReadPosRankSum=2.383;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3276,366,0 chrXVI 124217 . A G 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=200;Dels=0.00;FS=4.859;HaplotypeScore=12.3315;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.879;QD=22.93;ReadPosRankSum=1.680;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4585,528,0 chrXVI 124331 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.64;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,189:196:99:4045,462,0 chrXVI 124436 . T C 5207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=243;Dels=0.00;FS=4.089;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.941;QD=21.43;ReadPosRankSum=1.718;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5207,620,0 chrXVI 125654 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.27;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2351,270,0 chrXVI 125700 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.97;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2046,222,0 chrXVI 125767 . T G 2771 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.89;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2804,318,0 chrXVI 125804 . A G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=130;Dels=0.00;FS=8.113;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.687;QD=21.73;ReadPosRankSum=2.392;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2858,327,0 chrXVI 125867 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.72;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3045,348,0 chrXVI 125934 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=6.885;HaplotypeScore=8.4634;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.507;QD=23.45;ReadPosRankSum=0.438;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3377,384,0 chrXVI 125963 . G C 3179 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.27;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3212,363,0 chrXVI 125970 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.22;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3147,351,0 chrXVI 126095 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=3.659;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.341;QD=21.93;ReadPosRankSum=1.656;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3037,345,0 chrXVI 126620 . T C 1218 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.094;QD=22.15;ReadPosRankSum=1.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1251,147,0 chrXVI 126726 . T A 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.0809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.316;QD=22.30;ReadPosRankSum=1.581;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2597,297,0 chrXVI 126838 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.72;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3670,443,0 chrXVI 127009 . C A 5148.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5148,561,0 chrXVI 127901 . C T 5528.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.59;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5528,609,0 chrXVI 127908 . C T 5075.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.30;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5075,561,0 chrXVI 127985 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.8842;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.86;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4320,471,0 chrXVI 128231 . G A,T 202.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=146;Dels=0.02;FS=0.000;HaplotypeScore=126.7488;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.21;MQ0=0;QD=1.38;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/2:0,131,12:143:87:262,154,139,108,0,87 chrXVI 128274 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.02;FS=0.000;HaplotypeScore=18.7406;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.45;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2503,288,0 chrXVI 128692 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=210;Dels=0.00;FS=4.771;HaplotypeScore=21.5577;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.336;QD=20.55;ReadPosRankSum=1.683;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4316,492,0 chrXVI 128926 . G A 6933.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=13.5754;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.73;SB=-3.895e+03 GT:AD:DP:GQ:PL 1/1:0,316:319:99:6933,765,0 chrXVI 129148 . G A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=16.2148;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.01;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4581,516,0 chrXVI 129189 . C G 4724.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.18;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4724,537,0 chrXVI 129733 . C T 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.5685;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=2.356;QD=22.63;ReadPosRankSum=-0.041;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4774,490,0 chrXVI 130068 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.39;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4168,471,0 chrXVI 130137 . A G 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=213;Dels=0.00;FS=2.738;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.135;QD=20.28;ReadPosRankSum=2.414;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,207:213:99:4319,495,0 chrXVI 130145 . G T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.61;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4349,492,0 chrXVI 130597 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2017;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.32;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4062,471,0 chrXVI 130644 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.1466;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.27;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:3874,423,0 chrXVI 130647 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=205;Dels=0.00;FS=8.013;HaplotypeScore=9.1356;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.236;QD=17.14;ReadPosRankSum=1.651;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:3513,419,0 chrXVI 130793 . A C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=169;Dels=0.00;FS=5.243;HaplotypeScore=14.5430;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.113;QD=21.40;ReadPosRankSum=2.804;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3616,414,0 chrXVI 131043 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.158;QD=20.71;ReadPosRankSum=1.713;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3769,441,0 chrXVI 131050 . A C 3794.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.51;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3794,429,0 chrXVI 131325 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.30;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3969,435,0 chrXVI 131623 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3014,336,0 chrXVI 131754 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.716;QD=21.90;ReadPosRankSum=1.711;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3679,435,0 chrXVI 131951 . C T 5762.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.61;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5762,636,0 chrXVI 132377 . A G 195.01 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:27:228,27,0 chrXVI 132500 . G A 1015 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.07;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1048,117,0 chrXVI 132681 . G T 1301 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.59;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1334,147,0 chrXVI 132693 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.79;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1527,168,0 chrXVI 132838 . A C 1769 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.81;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1802,207,0 chrXVI 132855 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.99;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1612,183,0 chrXVI 132909 . A G 1188 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=17.22;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1221,144,0 chrXVI 132915 . A G 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-1.140;QD=17.30;ReadPosRankSum=1.687;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1348,153,0 chrXVI 133150 . G A 5040.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.00;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5040,552,0 chrXVI 133177 . C T 4711.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.39;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:4711,522,0 chrXVI 133186 . G A 5011.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.7054;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.50;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5011,555,0 chrXVI 133289 . A G 5766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.424;DP=280;Dels=0.00;FS=8.288;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.309;QD=20.59;ReadPosRankSum=3.405;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:4,276:280:99:5766,657,0 chrXVI 133388 . C G 5204.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.98;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,244:248:99:5204,600,0 chrXVI 133624 . T C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.0004;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.217;QD=21.49;ReadPosRankSum=1.693;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3804,438,0 chrXVI 133867 . T A 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DP=200;Dels=0.00;FS=10.082;HaplotypeScore=15.1564;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.087;QD=20.24;ReadPosRankSum=0.141;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4047,427,0 chrXVI 133951 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=146;Dels=0.00;FS=9.304;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.241;QD=21.57;ReadPosRankSum=2.952;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3182,357,0 chrXVI 134038 . T C 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;DP=139;Dels=0.00;FS=3.506;HaplotypeScore=11.8578;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.059;QD=22.16;ReadPosRankSum=0.436;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3113,332,0 chrXVI 134203 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=164;Dels=0.00;FS=3.556;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.075;QD=22.21;ReadPosRankSum=1.668;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3642,417,0 chrXVI 134476 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.456;QD=21.05;ReadPosRankSum=1.651;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3642,420,0 chrXVI 134518 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=189;Dels=0.00;FS=6.620;HaplotypeScore=10.3701;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.986;QD=21.05;ReadPosRankSum=2.423;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:3978,456,0 chrXVI 135194 . A G 4523.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.9255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4523,536,0 chrXVI 135326 . A G 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.1153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.832;QD=21.79;ReadPosRankSum=2.420;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3661,417,0 chrXVI 135618 . C A 3109 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=26.13;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3142,339,0 chrXVI 135712 . T C 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=126;Dels=0.00;FS=5.651;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=-0.146;QD=19.96;ReadPosRankSum=2.943;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:3,121:126:99:2548,291,0 chrXVI 135743 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-0.443;QD=21.11;ReadPosRankSum=1.707;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2925,339,0 chrXVI 135939 . T C 1358 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=6;QD=16.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,76:80:99:1391,171,0 chrXVI 135960 . T C 1545 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=18.808;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=1.595;QD=20.06;ReadPosRankSum=1.687;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1578,177,0 chrXVI 136628 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.36;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3023,351,0 chrXVI 136917 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.52;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4053,459,0 chrXVI 137217 . A T 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-1.396;QD=22.33;ReadPosRankSum=1.690;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3706,405,0 chrXVI 137220 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.21;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3265,381,0 chrXVI 137229 . T C 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=154;Dels=0.00;FS=7.831;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.768;QD=18.54;ReadPosRankSum=2.385;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:2888,339,0 chrXVI 137386 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.208;DP=162;Dels=0.00;FS=5.036;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.552;QD=19.53;ReadPosRankSum=3.404;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:4,156:162:99:3197,378,0 chrXVI 137748 . T C 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.679;QD=22.27;ReadPosRankSum=1.664;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2305,264,0 chrXVI 137962 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=3.209;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.595;QD=21.46;ReadPosRankSum=1.370;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2908,348,0 chrXVI 138385 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.3533;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=25.52;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2304,255,0 chrXVI 138435 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1712,183,0 chrXVI 138601 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.49;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2471,285,0 chrXVI 138747 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.83;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2391,267,0 chrXVI 139202 . G A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.6718;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3957,447,0 chrXVI 139546 . C A 692 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-1.436;QD=19.77;ReadPosRankSum=1.535;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,34:35:87:725,87,0 chrXVI 139547 . T A 666 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;MQRankSum=-0.714;QD=19.59;ReadPosRankSum=1.631;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:87:699,87,0 chrXVI 139548 . A G 634 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.223;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;MQRankSum=-0.204;QD=18.65;ReadPosRankSum=1.631;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:84:667,84,0 chrXVI 139594 . G A 10.45 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=10;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=1.386;QD=1.05;ReadPosRankSum=1.580;SB=-6.553e+01 GT:AD:DP:GQ:PL 0/1:3,7:10:18:40,0,18 chrXVI 139596 . A G 10.45 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=10;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=2.166;QD=1.05;ReadPosRankSum=1.386;SB=-6.508e+01 GT:AD:DP:GQ:PL 0/1:3,7:10:18:40,0,18 chrXVI 139660 . C T 1564 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1597,177,0 chrXVI 139685 . G T 2052 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4857;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2085,234,0 chrXVI 139893 . T A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.01;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3842,417,0 chrXVI 140178 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.379;QD=20.72;ReadPosRankSum=1.699;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2209,261,0 chrXVI 140372 . A G 2423 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.83;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2456,282,0 chrXVI 140589 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=151;Dels=0.00;FS=6.587;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.343;QD=21.81;ReadPosRankSum=2.352;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3294,387,0 chrXVI 140784 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2806,309,0 chrXVI 141165 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.78;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3367,363,0 chrXVI 141211 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.82;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2948,327,0 chrXVI 141213 . T G 2743 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.45;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2776,327,0 chrXVI 141255 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.3408;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.53;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2982,342,0 chrXVI 141402 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7413;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.55;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2370,261,0 chrXVI 141403 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6213;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.05;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2343,258,0 chrXVI 141543 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.77;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3086,339,0 chrXVI 141645 . G C 2601 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.56;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2634,315,0 chrXVI 141675 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.5140;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.72;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2851,318,0 chrXVI 141867 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=4.290;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.087;QD=20.31;ReadPosRankSum=1.637;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2978,359,0 chrXVI 141900 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=18.93;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2607,285,0 chrXVI 141903 . A C 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-0.325;QD=16.41;ReadPosRankSum=0.650;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2150,252,0 chrXVI 141974 . A G 2530 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.77;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2563,300,0 chrXVI 142047 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.68;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3412,402,0 chrXVI 142339 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4177;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.92;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3588,390,0 chrXVI 142384 . A T 2788 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.95;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2821,315,0 chrXVI 142584 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.91;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2920,324,0 chrXVI 143192 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.43;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3514,387,0 chrXVI 143261 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.03;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3050,330,0 chrXVI 143311 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=2.962;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.518;QD=19.98;ReadPosRankSum=2.338;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2671,306,0 chrXVI 143341 . C G 1830 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=16.49;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1863,216,0 chrXVI 143342 . T A 1867 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=16.82;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1900,213,0 chrXVI 143391 . A G 2122 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.61;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2155,246,0 chrXVI 143447 . A T 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=3.585;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.360;QD=22.17;ReadPosRankSum=1.646;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2715,294,0 chrXVI 143626 . A C 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.391;QD=21.79;ReadPosRankSum=1.706;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2931,330,0 chrXVI 143745 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.531;QD=21.52;ReadPosRankSum=1.648;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2723,318,0 chrXVI 143773 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.00;FS=7.728;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.152;QD=21.43;ReadPosRankSum=2.348;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2647,297,0 chrXVI 143841 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.21;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2498,273,0 chrXVI 143864 . G A 2363 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.10;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2396,264,0 chrXVI 143870 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.81;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2301,252,0 chrXVI 143935 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.43;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2090,234,0 chrXVI 143952 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.16;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2403,261,0 chrXVI 144102 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=24.35;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3223,354,0 chrXVI 144123 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.66;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3384,369,0 chrXVI 144259 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=182;Dels=0.00;FS=6.044;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.759;QD=22.46;ReadPosRankSum=2.893;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:3,176:182:99:4088,465,0 chrXVI 144415 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.79;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2997,327,0 chrXVI 144429 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.84;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2867,318,0 chrXVI 144486 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.274;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=0.448;QD=22.50;ReadPosRankSum=1.691;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3825,435,0 chrXVI 144595 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.7719;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.47;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2428,276,0 chrXVI 144607 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.8366;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.05;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2579,282,0 chrXVI 144737 . T C 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=3.274;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;MQRankSum=-0.623;QD=15.57;ReadPosRankSum=1.302;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2415,282,0 chrXVI 144819 . G T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.16;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3745,414,0 chrXVI 145101 . T C 2398 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.85;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2431,276,0 chrXVI 145109 . A G 2178 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.80;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2211,255,0 chrXVI 145176 . T C 2364 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.73;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2397,276,0 chrXVI 145227 . A G 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=3.035;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.490;QD=22.18;ReadPosRankSum=2.392;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2894,330,0 chrXVI 145251 . A G 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=6.354;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.236;QD=22.22;ReadPosRankSum=2.409;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2699,300,0 chrXVI 145329 . A G 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.293;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.701;QD=23.16;ReadPosRankSum=1.607;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2627,277,0 chrXVI 145358 . A T 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.229;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=0.795;QD=21.20;ReadPosRankSum=1.704;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2620,291,0 chrXVI 145367 . T G 2559 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.53;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2592,294,0 chrXVI 145411 . A T 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.219;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.325;QD=20.98;ReadPosRankSum=1.705;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2718,297,0 chrXVI 145599 . C G 2541 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.10;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2574,297,0 chrXVI 145717 . G C 2321 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.75;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2354,273,0 chrXVI 145885 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.80;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3085,366,0 chrXVI 145943 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.358;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.097;QD=21.66;ReadPosRankSum=1.671;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3703,423,0 chrXVI 145953 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.08;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3762,411,0 chrXVI 145973 . G A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.12;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3649,411,0 chrXVI 146064 . C T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.93;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3565,402,0 chrXVI 146345 . T C 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.181;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.733;QD=20.49;ReadPosRankSum=1.699;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2164,249,0 chrXVI 146346 . T C 2077 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.78;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2110,252,0 chrXVI 146388 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.76;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1871,204,0 chrXVI 146533 . A G 2509 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.02;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2542,288,0 chrXVI 146593 . T A 2665 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.58;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2698,297,0 chrXVI 146758 . T G 3016 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.32;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3049,348,0 chrXVI 146933 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.88;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3243,360,0 chrXVI 147048 . A G 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.607;QD=21.56;ReadPosRankSum=1.642;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1715,195,0 chrXVI 147075 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.08;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1954,216,0 chrXVI 147141 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.79;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2674,303,0 chrXVI 147209 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.06;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1520,177,0 chrXVI 147216 . C A 1469 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.36;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1502,171,0 chrXVI 147254 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.304;QD=21.97;ReadPosRankSum=1.696;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2186,249,0 chrXVI 147862 . A G 2484 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.56;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2517,288,0 chrXVI 147934 . C T 3479.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3479,393,0 chrXVI 149427 . T G 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=204;Dels=0.00;FS=2.846;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.249;QD=22.22;ReadPosRankSum=2.425;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4533,513,0 chrXVI 149499 . A T 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=212;Dels=0.00;FS=3.721;HaplotypeScore=9.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.013;QD=21.21;ReadPosRankSum=1.667;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4496,504,0 chrXVI 149586 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=24.7053;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.95;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3581,393,0 chrXVI 150219 . C A 2636 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.92;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2669,291,0 chrXVI 150295 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.26;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2499,276,0 chrXVI 150413 . T A 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.7121;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.128;QD=23.19;ReadPosRankSum=1.700;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2561,285,0 chrXVI 150484 . A G 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=114;Dels=0.00;FS=11.315;HaplotypeScore=5.7981;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.277;QD=19.38;ReadPosRankSum=2.938;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,110:114:99:2242,258,0 chrXVI 150500 . T C 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=113;Dels=0.00;FS=2.899;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.621;QD=19.41;ReadPosRankSum=2.406;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2226,252,0 chrXVI 150643 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.19;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3906,465,0 chrXVI 151045 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=180;Dels=0.00;FS=2.843;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.180;QD=21.57;ReadPosRankSum=2.381;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3882,450,0 chrXVI 151173 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.24;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2709,300,0 chrXVI 151184 . T C 2550 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.37;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2583,288,0 chrXVI 151370 . A G 835 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.42;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:868,102,0 chrXVI 151590 . A C 1766 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.84;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1799,204,0 chrXVI 151591 . G T 1830 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.56;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1863,204,0 chrXVI 152430 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.51;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1920,213,0 chrXVI 152472 . A G 2118 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.29;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2151,249,0 chrXVI 152993 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6326;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.59;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3184,354,0 chrXVI 153024 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=159;Dels=0.00;FS=7.051;HaplotypeScore=8.7787;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.620;QD=20.17;ReadPosRankSum=2.418;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3240,363,0 chrXVI 153125 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.54;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2375,270,0 chrXVI 153659 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.22;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3506,405,0 chrXVI 153677 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8367;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.01;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3498,399,0 chrXVI 153797 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.3697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4482,522,0 chrXVI 154089 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.51;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2740,303,0 chrXVI 154194 . A G 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=84;Dels=0.00;FS=6.725;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.540;QD=22.33;ReadPosRankSum=2.303;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1909,219,0 chrXVI 154283 . A C 1917 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1950,219,0 chrXVI 154334 . T C 1664 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1697,201,0 chrXVI 154721 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.09;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2434,273,0 chrXVI 154749 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.35;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2491,282,0 chrXVI 154774 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.33;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2757,309,0 chrXVI 155088 . T G 3017 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.25;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3050,354,0 chrXVI 155105 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.97;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3264,375,0 chrXVI 155232 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=171;Dels=0.00;FS=3.890;HaplotypeScore=11.0661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.117;QD=22.84;ReadPosRankSum=1.712;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3905,438,0 chrXVI 155661 . A G 2506 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.54;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2539,306,0 chrXVI 155901 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=4.270;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.112;QD=18.58;ReadPosRankSum=1.707;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2634,320,0 chrXVI 155906 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=4.216;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.315;QD=19.65;ReadPosRankSum=1.680;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2647,303,0 chrXVI 156304 . T A 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.316;DP=113;Dels=0.00;FS=8.056;HaplotypeScore=98.1630;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.013;QD=17.88;ReadPosRankSum=-0.207;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2054,234,0 chrXVI 156309 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=98.6876;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=13.58;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1391,179,0 chrXVI 156518 . T A 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=145;Dels=0.00;FS=3.101;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.729;QD=23.12;ReadPosRankSum=1.708;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3352,372,0 chrXVI 156745 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=5.878;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.275;QD=19.47;ReadPosRankSum=2.901;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2622,312,0 chrXVI 156772 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.26;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2209,243,0 chrXVI 157225 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.63;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2715,309,0 chrXVI 157382 . C T 2491 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.66;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2524,276,0 chrXVI 157477 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2835,315,0 chrXVI 157700 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1769;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.48;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4235,462,0 chrXVI 157791 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2866,324,0 chrXVI 158238 . A T 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.519;QD=20.71;ReadPosRankSum=1.671;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2394,261,0 chrXVI 158264 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.82;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1990,222,0 chrXVI 158999 . T C 2772 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.09;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2805,327,0 chrXVI 159167 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3306,375,0 chrXVI 159487 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.77;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3415,387,0 chrXVI 159707 . A T 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.507;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.9633;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.191;QD=23.35;ReadPosRankSum=0.440;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3456,357,0 chrXVI 159936 . T A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3630,402,0 chrXVI 160237 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2701,297,0 chrXVI 160357 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2567,279,0 chrXVI 160565 . T A 2768 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.28;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2801,312,0 chrXVI 160706 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.8127;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.991;QD=21.08;ReadPosRankSum=1.712;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3689,423,0 chrXVI 160790 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3337,366,0 chrXVI 160868 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3783,435,0 chrXVI 161120 . T C 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.9589;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.442;QD=21.63;ReadPosRankSum=1.679;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4261,509,0 chrXVI 161456 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=22.76;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3551,384,0 chrXVI 161462 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=21.33;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3413,387,0 chrXVI 161489 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=19.29;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3023,336,0 chrXVI 161510 . T C 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=7.653;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-1.366;QD=14.93;ReadPosRankSum=2.419;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2437,294,0 chrXVI 161519 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5380;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=16.04;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2775,309,0 chrXVI 161768 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.169;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.483;QD=22.19;ReadPosRankSum=1.657;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3117,369,0 chrXVI 161856 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.11;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4067,459,0 chrXVI 161895 . G A 4875.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=23.67;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4875,528,0 chrXVI 161906 . A G 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=3.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.554;QD=22.06;ReadPosRankSum=1.714;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4346,492,0 chrXVI 161921 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.31;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4083,453,0 chrXVI 161957 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.25;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3133,354,0 chrXVI 161996 . A T 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=3.147;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.194;QD=20.50;ReadPosRankSum=1.689;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3300,363,0 chrXVI 162002 . G C 3512.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.62;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3512,396,0 chrXVI 162337 . C T 536 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=13.74;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:39:63:569,63,0 chrXVI 162442 . T G 288 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.94;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:321,36,0 chrXVI 162467 . C T 405 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=18.41;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:438,48,0 chrXVI 162487 . G A 470 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.43;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:54:503,54,0 chrXVI 162525 . G A 512 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.48;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:60:545,60,0 chrXVI 162596 . A G 877 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=39.6609;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=19.49;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:910,102,0 chrXVI 162746 . T C 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-1.389;QD=21.23;ReadPosRankSum=1.701;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2389,276,0 chrXVI 162751 . T C 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.796;QD=20.18;ReadPosRankSum=2.408;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2455,282,0 chrXVI 162788 . A G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.692;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=0.459;QD=21.00;ReadPosRankSum=1.643;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2553,288,0 chrXVI 162815 . A G 2504 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.11;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2537,300,0 chrXVI 162884 . A T 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=3.488;HaplotypeScore=10.2405;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.407;QD=22.91;ReadPosRankSum=1.714;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4399,483,0 chrXVI 163022 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.11;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3293,366,0 chrXVI 163025 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.40;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3216,354,0 chrXVI 163124 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.6808;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=17.68;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2986,336,0 chrXVI 163127 . A G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=164;Dels=0.00;FS=6.103;HaplotypeScore=10.4858;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.321;QD=18.23;ReadPosRankSum=2.868;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:3,157:164:99:3023,351,0 chrXVI 163169 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.31;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3127,360,0 chrXVI 163239 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=21.2641;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.22;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4528,516,0 chrXVI 163301 . T A 5580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.299;QD=24.05;ReadPosRankSum=1.687;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5580,618,0 chrXVI 163406 . G T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.82;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4539,498,0 chrXVI 163412 . C A 4106.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1744;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.92;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4106,474,0 chrXVI 163478 . G A 4626.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.3707;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.36;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:4626,522,0 chrXVI 163732 . T C 2917 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=18.70;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2950,336,0 chrXVI 163733 . G T 3006 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=19.39;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3039,330,0 chrXVI 163739 . A G 2830 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=167;Dels=0.00;FS=12.310;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;MQRankSum=-1.912;QD=16.95;ReadPosRankSum=3.258;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:4,162:167:99:2863,327,0 chrXVI 163759 . G A 2690 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=17.13;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2723,297,0 chrXVI 163777 . C A 2494 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=15.89;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2527,279,0 chrXVI 163861 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.45;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2907,321,0 chrXVI 164063 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.29;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2362,261,0 chrXVI 164740 . A G 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=206;Dels=0.00;FS=2.155;HaplotypeScore=16.3384;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.148;QD=22.00;ReadPosRankSum=2.680;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:4533,522,0 chrXVI 165213 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.157;QD=21.48;ReadPosRankSum=0.497;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3104,366,0 chrXVI 165244 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=114;Dels=0.00;FS=13.095;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.009;QD=20.94;ReadPosRankSum=2.920;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:3,110:114:99:2420,279,0 chrXVI 165730 . T C 1432 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.13;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1465,171,0 chrXVI 165775 . T A 829 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.94;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:96:862,96,0 chrXVI 165899 . C G 625 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.55;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:75:658,75,0 chrXVI 165921 . T A 1011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.330;QD=24.07;ReadPosRankSum=1.650;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:99:1044,108,0 chrXVI 166081 . C G 3202 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.87;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3235,375,0 chrXVI 166118 . A C 3135 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.22;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3168,366,0 chrXVI 166158 . G A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.1029;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.24;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3905,435,0 chrXVI 166274 . A G 5006.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.86;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5006,567,0 chrXVI 166291 . T A 5083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=233;Dels=0.00;FS=6.071;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.263;QD=21.82;ReadPosRankSum=2.935;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:5083,555,0 chrXVI 166458 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=195;Dels=0.00;FS=2.832;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.082;QD=18.93;ReadPosRankSum=2.348;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3692,435,0 chrXVI 166465 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.05;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3695,402,0 chrXVI 166927 . G C 2725 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.29;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2758,315,0 chrXVI 167227 . T C 3087 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3120,357,0 chrXVI 167460 . T C 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=101;Dels=0.00;FS=2.913;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.603;QD=21.13;ReadPosRankSum=2.401;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2167,243,0 chrXVI 167685 . G C 1888 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.21;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1921,228,0 chrXVI 167905 . C G 2022 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=22.98;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2055,237,0 chrXVI 167941 . T G 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=1.235;QD=22.06;ReadPosRankSum=2.372;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1445,162,0 chrXVI 167998 . G A 929 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=12.73;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:962,108,0 chrXVI 167999 . A G 904 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;MQRankSum=0.805;QD=12.73;ReadPosRankSum=1.683;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:937,108,0 chrXVI 168007 . G T 1098 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=13.23;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1131,129,0 chrXVI 168021 . T C 1064 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.23;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1097,123,0 chrXVI 168022 . C T 1042 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.98;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1075,123,0 chrXVI 168031 . C T 1085 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=11.19;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1118,129,0 chrXVI 168037 . T C 1054 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.349;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;MQRankSum=-1.661;QD=10.76;ReadPosRankSum=1.697;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1087,123,0 chrXVI 168040 . T C 1077 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;QD=10.99;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1110,126,0 chrXVI 168073 . T G 1247 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=10.94;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1280,147,0 chrXVI 168076 . A G 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;MQRankSum=0.587;QD=10.94;ReadPosRankSum=1.612;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:1302,147,0 chrXVI 168575 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.587;QD=20.99;ReadPosRankSum=0.941;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2804,300,0 chrXVI 168714 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.90;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2280,246,0 chrXVI 169035 . A G 3173 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.88;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3206,369,0 chrXVI 169475 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.04;FS=0.000;HaplotypeScore=14.5917;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.62;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2508,276,0 chrXVI 169613 . C T 857 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=0;QD=11.90;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:890,99,0 chrXVI 169620 . C T 895 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=11.33;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:928,99,0 chrXVI 169623 . A G 858 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7049;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=10.59;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:891,99,0 chrXVI 169651 . A G 1101 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=3.415;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;MQRankSum=-0.308;QD=12.23;ReadPosRankSum=1.694;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1134,129,0 chrXVI 169653 . A G 1097 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=7.007;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;MQRankSum=-1.675;QD=12.33;ReadPosRankSum=2.394;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1130,129,0 chrXVI 169654 . A T 1148 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=13.20;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1181,129,0 chrXVI 169662 . C G 1027 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=10.93;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1060,123,0 chrXVI 169696 . G C 1166 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=12.27;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1199,138,0 chrXVI 169697 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=12.83;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1252,138,0 chrXVI 169911 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=22.33;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2355,261,0 chrXVI 170076 . C A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.9069;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.36;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3482,390,0 chrXVI 170104 . T G 2551 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.26;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2584,297,0 chrXVI 170172 . A G 2525 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.40;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2558,294,0 chrXVI 170258 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.89;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3365,366,0 chrXVI 170349 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.35;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2625,303,0 chrXVI 170630 . T C 1919 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.38;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1952,234,0 chrXVI 170647 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.54;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1772,195,0 chrXVI 170715 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.55;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1929,210,0 chrXVI 170718 . A G 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.157;QD=18.22;ReadPosRankSum=1.697;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1837,210,0 chrXVI 170759 . A G 1977 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.97;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2010,231,0 chrXVI 170856 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.55;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2188,240,0 chrXVI 170972 . C G 3707.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.68;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3707,429,0 chrXVI 171075 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.12;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3273,372,0 chrXVI 171270 . A T 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.9653;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.497;QD=19.75;ReadPosRankSum=1.665;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2067,228,0 chrXVI 171422 . T C 2853 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2886,342,0 chrXVI 171708 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=136;Dels=0.00;FS=9.834;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.097;QD=21.52;ReadPosRankSum=2.873;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2960,336,0 chrXVI 171729 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.402;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.254;QD=20.77;ReadPosRankSum=1.613;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2442,291,0 chrXVI 171822 . G A 1980 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.50;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2013,222,0 chrXVI 171860 . G C 2102 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.45;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2135,240,0 chrXVI 171885 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.78;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1932,213,0 chrXVI 171898 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=17.62;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1689,192,0 chrXVI 172109 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6468;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.85;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3410,378,0 chrXVI 172192 . A G 3532.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.35;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3532,405,0 chrXVI 172402 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.2572;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.502;QD=21.06;ReadPosRankSum=1.675;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3854,444,0 chrXVI 172453 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.3960;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.59;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3998,447,0 chrXVI 172579 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=173;Dels=0.00;FS=3.379;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.148;QD=21.45;ReadPosRankSum=1.712;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3710,423,0 chrXVI 172786 . T C 2347 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.78;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2380,282,0 chrXVI 172923 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.99;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1922,210,0 chrXVI 172925 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.37;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1776,204,0 chrXVI 173018 . C A 2191 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.31;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2224,246,0 chrXVI 173053 . T A 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=91;Dels=0.00;FS=5.497;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.233;QD=17.90;ReadPosRankSum=2.812;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1662,189,0 chrXVI 173054 . A T 1635 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.17;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1668,189,0 chrXVI 173291 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.57;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2516,282,0 chrXVI 173330 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.93;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2739,312,0 chrXVI 173535 . T G 2528 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.18;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2561,291,0 chrXVI 173921 . G C 2252 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.45;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2285,261,0 chrXVI 173952 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=21.14;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2020,225,0 chrXVI 173979 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=19.24;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2188,243,0 chrXVI 173981 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=18.17;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2014,240,0 chrXVI 174059 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.35;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2801,315,0 chrXVI 174069 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.558;DP=139;Dels=0.00;FS=5.963;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=1.689;QD=20.68;ReadPosRankSum=2.950;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2907,327,0 chrXVI 174144 . A G 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.960;DP=236;Dels=0.00;FS=53.135;HaplotypeScore=14.9849;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=15;MQRankSum=-7.732;QD=0.47;ReadPosRankSum=0.251;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,72:236:99:141,0,2513 chrXVI 174156 . T C 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.693;DP=269;Dels=0.00;FS=68.485;HaplotypeScore=19.8977;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=17;MQRankSum=-7.697;QD=0.86;ReadPosRankSum=2.862;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:176,92:269:99:261,0,2605 chrXVI 174782 . T C 2646 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.21;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2679,312,0 chrXVI 174881 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.18;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2524,279,0 chrXVI 174906 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.57;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2448,267,0 chrXVI 175137 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.0847;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.88;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2856,312,0 chrXVI 175312 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.9462;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.90;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4397,492,0 chrXVI 175582 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=177;Dels=0.00;FS=3.007;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.161;QD=23.44;ReadPosRankSum=2.422;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4149,474,0 chrXVI 175997 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=86.8079;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.75;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1870,213,0 chrXVI 176433 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3609,396,0 chrXVI 176684 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=139;Dels=0.00;FS=3.765;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.126;QD=20.42;ReadPosRankSum=1.707;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2872,336,0 chrXVI 177089 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=2.973;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.452;QD=22.59;ReadPosRankSum=2.386;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3501,414,0 chrXVI 177345 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.36;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3761,417,0 chrXVI 177590 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.5851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3139,345,0 chrXVI 177695 . C G 2435 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.55;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2468,294,0 chrXVI 177875 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.74;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1716,198,0 chrXVI 178167 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.93;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2853,324,0 chrXVI 178374 . G A 2499 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.51;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2532,285,0 chrXVI 178519 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.74;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2288,252,0 chrXVI 178571 . A G 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=100;Dels=0.00;FS=6.520;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.783;QD=22.93;ReadPosRankSum=2.400;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2326,261,0 chrXVI 178695 . C G 2129 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.71;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2162,249,0 chrXVI 178700 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.30;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1850,210,0 chrXVI 178737 . C A 1584 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.42;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1617,177,0 chrXVI 178807 . A G 2292 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2325,264,0 chrXVI 179066 . G A 1167 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.44;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1200,135,0 chrXVI 179451 . A T 4780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.1086;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.394;QD=23.66;ReadPosRankSum=1.698;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4780,534,0 chrXVI 179572 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.22;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4064,450,0 chrXVI 179634 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.4324;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.64;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3984,438,0 chrXVI 180404 . T C 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=3.455;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.690;QD=22.76;ReadPosRankSum=1.671;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2628,303,0 chrXVI 180436 . A G 2521 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2554,288,0 chrXVI 180580 . A G 2805 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2838,324,0 chrXVI 180750 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4267,471,0 chrXVI 180828 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.0687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.299;QD=21.67;ReadPosRankSum=1.711;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3511,419,0 chrXVI 180992 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.81;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3223,351,0 chrXVI 181434 . G A 2543 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.22;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2576,279,0 chrXVI 181552 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3294,375,0 chrXVI 181857 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=162;Dels=0.00;FS=8.967;HaplotypeScore=10.5210;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.711;QD=23.04;ReadPosRankSum=3.405;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3732,429,0 chrXVI 182353 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.68;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2402,267,0 chrXVI 182574 . G A 1920 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.10;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1953,222,0 chrXVI 182629 . T A 2435 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.9508;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.55;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2468,276,0 chrXVI 182784 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.66;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2654,294,0 chrXVI 182943 . C G 1039 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.76;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1072,123,0 chrXVI 183101 . T C 723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.101;QD=19.54;ReadPosRankSum=2.317;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,35:37:84:756,84,0 chrXVI 183118 . G A 1066 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.68;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1099,120,0 chrXVI 183385 . A G 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=153;Dels=0.00;FS=13.539;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.023;QD=20.77;ReadPosRankSum=3.379;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3211,375,0 chrXVI 183482 . A G 2401 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.70;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2434,288,0 chrXVI 183510 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.69;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2971,327,0 chrXVI 184038 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=154;Dels=0.00;FS=7.209;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.020;QD=20.67;ReadPosRankSum=2.417;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3216,386,0 chrXVI 184173 . G C 2203 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2236,252,0 chrXVI 185261 . A G 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=98;Dels=0.00;FS=3.957;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.125;QD=21.96;ReadPosRankSum=1.696;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2185,249,0 chrXVI 185383 . C T 551 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=123.9978;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=2.99;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:63:584,63,0 chrXVI 185389 . C T 745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.3913;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.372;QD=4.01;ReadPosRankSum=0.782;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:84:778,84,0 chrXVI 185395 . C T 908 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=4.88;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:941,102,0 chrXVI 185506 . G A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.8427;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.67;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4568,504,0 chrXVI 185620 . T C 6755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=311;Dels=0.00;FS=5.709;HaplotypeScore=21.2418;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.082;QD=21.72;ReadPosRankSum=2.931;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:3,302:311:99:6755,771,0 chrXVI 186190 . A G 4114.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.48;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4114,474,0 chrXVI 186214 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.95;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3787,420,0 chrXVI 186540 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.36;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3866,426,0 chrXVI 186670 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.958;DP=156;Dels=0.00;FS=15.383;HaplotypeScore=7.8965;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.253;QD=21.50;ReadPosRankSum=4.059;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:6,150:156:99:3354,378,0 chrXVI 186706 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.99;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3724,408,0 chrXVI 186736 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.65;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3377,396,0 chrXVI 186760 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7483;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.04;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3615,396,0 chrXVI 186844 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=3.636;HaplotypeScore=8.5765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.296;QD=20.65;ReadPosRankSum=1.690;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3386,393,0 chrXVI 186924 . C A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.9010;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.93;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3328,375,0 chrXVI 187240 . T C 5902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;MQRankSum=-0.273;QD=22.27;ReadPosRankSum=2.431;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:5902,695,0 chrXVI 187312 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=5.7463;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=14.64;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3456,405,0 chrXVI 187324 . T A 1496 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.893;DP=254;Dels=0.00;FS=0.488;HaplotypeScore=247.4757;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;MQRankSum=-3.403;QD=5.89;ReadPosRankSum=-10.463;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:102,152:254:99:1529,174,0 chrXVI 187327 . T A 1209 SnpCluster AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=247.4757;MLEAC=2;MLEAF=1.00;MQ=35.87;MQ0=0;QD=4.86;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:1242,144,0 chrXVI 187330 . T A 1088 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.072;DP=246;Dels=0.00;FS=10.338;HaplotypeScore=247.2711;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;MQRankSum=-2.669;QD=4.42;ReadPosRankSum=3.395;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:6,240:246:99:1121,132,0 chrXVI 187333 . T A 390.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=204.6451;MLEAC=1;MLEAF=0.500;MQ=35.21;MQ0=0;MQRankSum=-3.423;QD=1.59;ReadPosRankSum=-0.817;SB=-3.720e+02 GT:AD:DP:GQ:PL 0/1:175,70:245:99:420,0,786 chrXVI 187673 . A T 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=1.135;QD=22.08;ReadPosRankSum=1.698;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4482,498,0 chrXVI 188007 . G C 2522 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.0598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2555,306,0 chrXVI 188250 . A C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=109;Dels=0.00;FS=13.959;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.194;QD=22.18;ReadPosRankSum=2.936;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2451,285,0 chrXVI 188615 . T C 2186 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.43;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2219,252,0 chrXVI 188889 . T C 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.617;QD=20.19;ReadPosRankSum=1.694;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1850,213,0 chrXVI 189099 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.36;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2169,240,0 chrXVI 189266 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=120;Dels=0.00;FS=7.686;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.886;QD=17.06;ReadPosRankSum=2.408;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2080,237,0 chrXVI 189282 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.04;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2214,243,0 chrXVI 189304 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.28;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2775,306,0 chrXVI 189393 . G C 1754 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1787,204,0 chrXVI 189526 . C G 1866 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=17.60;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1899,219,0 chrXVI 189738 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.34;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2187,240,0 chrXVI 189850 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.27;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3058,339,0 chrXVI 189891 . A C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=134;Dels=0.00;FS=7.976;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.829;QD=22.56;ReadPosRankSum=2.375;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:3056,348,0 chrXVI 190020 . A G 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=3.235;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.207;QD=21.87;ReadPosRankSum=1.697;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2198,246,0 chrXVI 190367 . A T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3496,387,0 chrXVI 190515 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.679;QD=20.74;ReadPosRankSum=1.709;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3124,357,0 chrXVI 190713 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=6.570;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.570;QD=20.77;ReadPosRankSum=2.370;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2588,300,0 chrXVI 190727 . G T 2380 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.59;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2413,279,0 chrXVI 190807 . G C 2507 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.61;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2540,288,0 chrXVI 190868 . A G 2546 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.6781;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.58;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2579,297,0 chrXVI 191121 . C T 2419 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=24.19;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2452,276,0 chrXVI 191167 . T G 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.553;QD=20.20;ReadPosRankSum=-0.516;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1952,222,0 chrXVI 191170 . T C 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.771;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.217;QD=19.27;ReadPosRankSum=1.696;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1902,228,0 chrXVI 191183 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.58;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1594,195,0 chrXVI 191256 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.24;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1923,210,0 chrXVI 191290 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.93;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2029,222,0 chrXVI 191540 . T C 1321 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1354,153,0 chrXVI 191750 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.73;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2124,237,0 chrXVI 191940 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.13;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2147,234,0 chrXVI 191944 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.71;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2352,270,0 chrXVI 192044 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.83;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3630,408,0 chrXVI 192260 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4277,480,0 chrXVI 192347 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.68;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3989,453,0 chrXVI 192377 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.72;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3521,402,0 chrXVI 192751 . G A 1018 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=20.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1051,114,0 chrXVI 193187 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.46;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2391,261,0 chrXVI 193229 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.53;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3435,375,0 chrXVI 193259 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.281;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.476;QD=22.09;ReadPosRankSum=1.709;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3358,384,0 chrXVI 193383 . G T 4020.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.81;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4020,441,0 chrXVI 193737 . G C 2837 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=22.52;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2870,333,0 chrXVI 193773 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=20.33;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2676,303,0 chrXVI 193788 . T C 2610 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.39;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2643,300,0 chrXVI 193935 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.667;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.182;QD=23.82;ReadPosRankSum=1.702;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2748,315,0 chrXVI 193956 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=23.46;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1933,207,0 chrXVI 193968 . A C 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.651;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.442;QD=20.10;ReadPosRankSum=1.664;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1058,126,0 chrXVI 193987 . C T 876 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.37;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:909,102,0 chrXVI 194050 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.93;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2354,258,0 chrXVI 194152 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.44;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3174,345,0 chrXVI 194308 . A G 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.962;QD=20.83;ReadPosRankSum=1.627;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2095,243,0 chrXVI 194710 . C A 2389 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.58;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2422,273,0 chrXVI 194741 . T G 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.383;QD=20.40;ReadPosRankSum=1.706;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2706,306,0 chrXVI 194758 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=18.56;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2798,321,0 chrXVI 194832 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=147;Dels=0.00;FS=7.066;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.143;QD=20.19;ReadPosRankSum=2.399;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3001,351,0 chrXVI 195093 . T C 2325 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.90;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2358,276,0 chrXVI 195109 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.35;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2051,231,0 chrXVI 195142 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.9422;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=17.75;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2074,228,0 chrXVI 195253 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=144;Dels=0.00;FS=5.862;HaplotypeScore=12.8232;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.490;QD=20.77;ReadPosRankSum=2.951;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3024,351,0 chrXVI 195281 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.76;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2547,282,0 chrXVI 195285 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.7687;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.23;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2629,291,0 chrXVI 195725 . G T 2821 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.32;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2854,315,0 chrXVI 195862 . C G 2866 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.88;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2899,327,0 chrXVI 195879 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.92;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2742,312,0 chrXVI 195918 . T C 2488 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.29;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2521,294,0 chrXVI 196451 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.3081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.504;QD=22.78;ReadPosRankSum=1.694;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4191,474,0 chrXVI 196496 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.12;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3723,414,0 chrXVI 196580 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=123;Dels=0.00;FS=5.326;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.092;QD=21.05;ReadPosRankSum=2.892;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:3,118:123:99:2622,300,0 chrXVI 196727 . A T 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.598;QD=20.05;ReadPosRankSum=1.701;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2238,252,0 chrXVI 197567 . A G 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.299;QD=20.63;ReadPosRankSum=1.672;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2426,279,0 chrXVI 197686 . A G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.632;QD=19.91;ReadPosRankSum=1.699;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2104,231,0 chrXVI 198072 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2140,234,0 chrXVI 198355 . A T 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=18.2261;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=2.864;QD=20.44;ReadPosRankSum=2.592;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2608,273,0 chrXVI 198637 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=6.442;HaplotypeScore=5.6023;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.796;QD=20.30;ReadPosRankSum=2.419;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3260,366,0 chrXVI 198653 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.48;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3033,330,0 chrXVI 198742 . T A 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=185;Dels=0.00;FS=8.995;HaplotypeScore=5.7797;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.485;QD=23.09;ReadPosRankSum=2.410;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4271,480,0 chrXVI 198816 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8504;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.81;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3408,393,0 chrXVI 198834 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.25;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3192,354,0 chrXVI 199033 . T G 2673 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.56;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2706,306,0 chrXVI 199055 . A G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=117;Dels=0.00;FS=3.022;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.083;QD=21.38;ReadPosRankSum=2.387;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2535,294,0 chrXVI 199138 . T C 2760 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2793,321,0 chrXVI 199180 . C A 2905 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.52;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2938,321,0 chrXVI 199239 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.37;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1805,195,0 chrXVI 199298 . T C 1163 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.38;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1196,135,0 chrXVI 199576 . T A 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.703;QD=24.81;ReadPosRankSum=1.703;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2936,336,0 chrXVI 199685 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.66;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3738,417,0 chrXVI 199717 . C T 4639.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.1091;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.52;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4639,513,0 chrXVI 199801 . T C 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=202;Dels=0.00;FS=6.047;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.365;QD=22.23;ReadPosRankSum=2.935;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:3,198:202:99:4490,516,0 chrXVI 199875 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.97;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4361,471,0 chrXVI 199884 . C T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.02;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4057,459,0 chrXVI 200053 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.75;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3662,402,0 chrXVI 200154 . G T 2694 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.90;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2727,297,0 chrXVI 200253 . A G 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.264;QD=20.69;ReadPosRankSum=1.670;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2330,264,0 chrXVI 200368 . T G 2768 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2801,318,0 chrXVI 200509 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.33;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2275,278,0 chrXVI 200515 . A G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=4.738;HaplotypeScore=5.9156;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.912;QD=19.03;ReadPosRankSum=1.468;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2545,294,0 chrXVI 200755 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.39;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2764,303,0 chrXVI 201034 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.35;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2833,309,0 chrXVI 201192 . A G 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=118;Dels=0.00;FS=3.125;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.069;QD=19.53;ReadPosRankSum=1.702;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,114:118:99:2337,267,0 chrXVI 201198 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.55;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2379,270,0 chrXVI 201262 . A T 2557 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.98;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2590,294,0 chrXVI 201590 . T G 6020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=251;Dels=0.00;FS=2.760;HaplotypeScore=12.4534;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.357;QD=23.98;ReadPosRankSum=2.401;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:6020,684,0 chrXVI 202057 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.812;QD=21.39;ReadPosRankSum=1.671;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2471,288,0 chrXVI 202096 . C T 2451 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.28;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2484,270,0 chrXVI 202171 . A G 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=96;Dels=0.00;FS=4.214;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.893;QD=16.91;ReadPosRankSum=1.696;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1656,198,0 chrXVI 202174 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=98;Dels=0.00;FS=8.935;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.764;QD=18.24;ReadPosRankSum=2.399;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1821,210,0 chrXVI 202439 . T A 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.653;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.195;QD=24.14;ReadPosRankSum=1.710;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3862,423,0 chrXVI 202549 . T C 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=119;Dels=0.00;FS=13.461;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.263;QD=20.13;ReadPosRankSum=2.941;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2429,279,0 chrXVI 202594 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.47;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2214,258,0 chrXVI 202808 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.86;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2171,237,0 chrXVI 202948 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2127,246,0 chrXVI 203064 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1718,192,0 chrXVI 203414 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.50;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3969,441,0 chrXVI 203462 . T C 5097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=211;Dels=0.00;FS=2.995;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.805;QD=24.16;ReadPosRankSum=2.403;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:5097,585,0 chrXVI 204017 . A G 5183.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.16;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5183,617,0 chrXVI 204038 . G A 5572.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.95;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5572,621,0 chrXVI 204251 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.846;QD=19.81;ReadPosRankSum=1.653;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3506,416,0 chrXVI 204266 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.25;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3761,414,0 chrXVI 204653 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.64;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4114,456,0 chrXVI 204722 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.9225;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.75;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3895,435,0 chrXVI 204785 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3363,369,0 chrXVI 204854 . T G 2670 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2703,309,0 chrXVI 204977 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.443;QD=22.87;ReadPosRankSum=1.700;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2503,297,0 chrXVI 205023 . C A 1990 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.87;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2023,231,0 chrXVI 205176 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=148;Dels=0.00;FS=5.151;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.641;QD=22.63;ReadPosRankSum=3.399;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:4,142:148:99:3349,375,0 chrXVI 205415 . C G 4090.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0129;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.23;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4090,483,0 chrXVI 206057 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.73;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2361,285,0 chrXVI 206288 . T C 2133 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.51;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2166,249,0 chrXVI 206683 . T C 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.458;QD=21.60;ReadPosRankSum=1.657;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3036,348,0 chrXVI 207664 . G A 7065.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=29.4231;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:0,328:330:99:7065,774,0 chrXVI 207823 . A T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.22;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3942,450,0 chrXVI 208076 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.41;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2281,252,0 chrXVI 208780 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.97;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3240,354,0 chrXVI 208816 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.24;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3469,381,0 chrXVI 208843 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.95;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3672,414,0 chrXVI 209302 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.02;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3916,426,0 chrXVI 209553 . A G 3050 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.63;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3083,348,0 chrXVI 209844 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1596,174,0 chrXVI 209982 . C T 655 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.24;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:688,78,0 chrXVI 210131 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.91;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1611,183,0 chrXVI 210171 . C T 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=-1.361;QD=21.00;ReadPosRankSum=1.361;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:2,57:61:99:1314,112,0 chrXVI 210288 . T G 1243 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=23.02;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1276,144,0 chrXVI 210366 . G A 294 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;QD=4.39;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:36:327,36,0 chrXVI 210669 . A G 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=3.347;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.629;QD=21.90;ReadPosRankSum=1.629;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1500,171,0 chrXVI 210711 . T G 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=2.988;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.217;QD=22.76;ReadPosRankSum=2.392;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1968,228,0 chrXVI 210762 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.66;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1831,201,0 chrXVI 210783 . T C 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=81;Dels=0.00;FS=6.021;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.738;QD=20.25;ReadPosRankSum=2.913;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1673,192,0 chrXVI 210832 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.72;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2162,240,0 chrXVI 210930 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.85;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2766,303,0 chrXVI 211038 . A G 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=0.400;QD=19.01;ReadPosRankSum=1.632;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2010,234,0 chrXVI 211043 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=19.34;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2025,231,0 chrXVI 211065 . C G 1958 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=17.64;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1991,225,0 chrXVI 211075 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.11;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2043,225,0 chrXVI 211480 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=18.47;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1123,126,0 chrXVI 211798 . C T 90.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:123,15,0 chrXVI 211816 . T C 86.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=2;QD=12.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:15:119,15,0 chrXVI 211839 . A G 95.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=2;QD=13.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:15:128,15,0 chrXVI 211951 . T A 105.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=0;MQRankSum=-0.380;QD=2.57;ReadPosRankSum=1.648;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,40:41:15:138,15,0 chrXVI 212028 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=141.1102;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=15.82;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1267,144,0 chrXVI 212370 . A G 2240 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2273,267,0 chrXVI 212526 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.266;QD=24.43;ReadPosRankSum=1.707;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3347,390,0 chrXVI 212736 . A G 2140 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.059;QD=20.58;ReadPosRankSum=2.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2173,252,0 chrXVI 212773 . G A 1068 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.23;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1101,126,0 chrXVI 212817 . C T 273 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.65;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:20:36:306,36,0 chrXVI 213190 . G T 2051 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.57;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2084,228,0 chrXVI 213534 . T G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.128;QD=21.85;ReadPosRankSum=-0.988;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3300,360,0 chrXVI 213597 . T A 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.739;QD=22.13;ReadPosRankSum=1.690;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3629,420,0 chrXVI 213837 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.81;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3650,402,0 chrXVI 214028 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=7.976;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.791;QD=22.46;ReadPosRankSum=2.372;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2886,333,0 chrXVI 214067 . G A 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.154;DP=101;Dels=0.00;FS=4.992;HaplotypeScore=5.8743;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.423;QD=18.90;ReadPosRankSum=1.389;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1942,219,0 chrXVI 214068 . G A 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.332;DP=99;Dels=0.00;FS=4.905;HaplotypeScore=5.8743;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.417;QD=20.15;ReadPosRankSum=1.452;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2028,231,0 chrXVI 214281 . A G 2294 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.6214;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.71;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2327,270,0 chrXVI 214333 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.87;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2818,303,0 chrXVI 214358 . A C 2297 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.30;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2330,276,0 chrXVI 214684 . T G 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=222;Dels=0.00;FS=2.571;HaplotypeScore=15.4859;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.577;QD=21.44;ReadPosRankSum=2.859;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:4760,537,0 chrXVI 214724 . C T 4830.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.00;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4830,537,0 chrXVI 214866 . T C 4746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=229;Dels=0.00;FS=8.500;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.782;QD=20.72;ReadPosRankSum=2.417;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:4746,560,0 chrXVI 214888 . T A 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=245;Dels=0.00;FS=4.447;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=1.251;QD=21.57;ReadPosRankSum=1.676;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5285,585,0 chrXVI 214946 . T A 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=3.956;HaplotypeScore=9.6379;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.211;QD=21.63;ReadPosRankSum=1.695;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4110,450,0 chrXVI 214963 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.99;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3569,423,0 chrXVI 215112 . A C 1839 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=12.86;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1872,216,0 chrXVI 215126 . A G 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=3.015;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-0.161;QD=11.71;ReadPosRankSum=2.416;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:1743,204,0 chrXVI 215175 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=13.31;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1604,177,0 chrXVI 215183 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.01;FS=3.278;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-0.637;QD=13.04;ReadPosRankSum=1.703;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:1585,180,0 chrXVI 215186 . T C 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.01;FS=6.524;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;MQRankSum=-1.941;QD=14.05;ReadPosRankSum=2.407;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1677,189,0 chrXVI 215360 . T A 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=108;Dels=0.04;FS=7.139;HaplotypeScore=29.1439;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.509;QD=14.46;ReadPosRankSum=2.379;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1595,177,0 chrXVI 215587 . G C 2454 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.37;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2487,279,0 chrXVI 215698 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.26;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2444,279,0 chrXVI 215718 . C A 2273 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.29;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2306,252,0 chrXVI 215770 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=117;Dels=0.00;FS=5.234;HaplotypeScore=4.3170;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=0.067;QD=16.25;ReadPosRankSum=3.262;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:1934,225,0 chrXVI 215778 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=17.37;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2030,228,0 chrXVI 215926 . A C 2825 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.60;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2858,330,0 chrXVI 216015 . A G 3126 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=21.12;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3159,357,0 chrXVI 216037 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=153;Dels=0.00;FS=2.783;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.334;QD=20.35;ReadPosRankSum=2.417;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3146,369,0 chrXVI 216100 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.54;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4467,486,0 chrXVI 216380 . C G 3447.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.41;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3447,399,0 chrXVI 216447 . A C 3123 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.96;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3156,375,0 chrXVI 216567 . T C 2841 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.20;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2874,330,0 chrXVI 216683 . T C 2462 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.7642;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.18;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2495,297,0 chrXVI 216696 . A G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=7.942;HaplotypeScore=8.5650;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.524;QD=19.53;ReadPosRankSum=2.373;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2553,288,0 chrXVI 217014 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=2.623;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.150;QD=21.20;ReadPosRankSum=2.410;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2641,306,0 chrXVI 217016 . A G 2692 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.89;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2725,312,0 chrXVI 217064 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-1.469;QD=16.69;ReadPosRankSum=1.694;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1585,189,0 chrXVI 217075 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.74;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1559,171,0 chrXVI 217188 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=148;Dels=0.00;FS=6.412;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.125;QD=20.41;ReadPosRankSum=2.383;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3053,351,0 chrXVI 217218 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=3.040;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.364;QD=19.84;ReadPosRankSum=2.416;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2910,345,0 chrXVI 217275 . A C 3690.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.64;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3690,411,0 chrXVI 217557 . A C 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=201;Dels=0.00;FS=3.028;HaplotypeScore=19.0473;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.676;QD=20.01;ReadPosRankSum=2.425;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4022,462,0 chrXVI 217929 . A G 2686 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2719,321,0 chrXVI 218017 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=143;Dels=0.00;FS=2.725;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.453;QD=21.95;ReadPosRankSum=2.415;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3172,375,0 chrXVI 218115 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3604,399,0 chrXVI 218188 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=3.132;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.048;QD=21.80;ReadPosRankSum=1.669;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2409,273,0 chrXVI 218575 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=3.066;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.644;QD=22.06;ReadPosRankSum=1.644;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1776,204,0 chrXVI 219029 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.28;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3399,372,0 chrXVI 219860 . T C 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=197;Dels=0.00;FS=5.934;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.578;QD=20.90;ReadPosRankSum=2.953;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:3,190:197:99:4117,474,0 chrXVI 220071 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.34;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3734,411,0 chrXVI 220106 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.01;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2982,330,0 chrXVI 220130 . T A 2566 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.56;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2599,288,0 chrXVI 220163 . T C 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=129;Dels=0.00;FS=3.023;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.649;QD=20.59;ReadPosRankSum=2.373;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2689,306,0 chrXVI 220701 . C T 1938 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.40;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1971,216,0 chrXVI 220715 . T C 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.360;QD=20.60;ReadPosRankSum=1.658;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1949,219,0 chrXVI 220856 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2104,231,0 chrXVI 221029 . A G 2852 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.63;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2885,342,0 chrXVI 221076 . T C 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.443;QD=22.80;ReadPosRankSum=1.660;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2245,261,0 chrXVI 221149 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.88;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2564,282,0 chrXVI 221325 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.71;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1567,177,0 chrXVI 221327 . A T 1528 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.19;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1561,174,0 chrXVI 221382 . C T 1652 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.56;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1685,183,0 chrXVI 221495 . G A 1248 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.80;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1281,141,0 chrXVI 221729 . T A 1950 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1983,219,0 chrXVI 221764 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.13;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1914,210,0 chrXVI 222062 . A G 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=133;Dels=0.00;FS=4.116;HaplotypeScore=8.6530;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.282;QD=22.18;ReadPosRankSum=1.705;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,128:133:99:2983,339,0 chrXVI 222162 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.42;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2768,300,0 chrXVI 222387 . T C 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-0.648;QD=20.17;ReadPosRankSum=1.702;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2373,270,0 chrXVI 222390 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.306;QD=20.09;ReadPosRankSum=1.703;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2424,276,0 chrXVI 222598 . G A 4446.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.6229;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.56;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4446,486,0 chrXVI 222732 . C A 5168.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.01;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5168,582,0 chrXVI 222796 . G T 5615.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.49;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5615,615,0 chrXVI 222840 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.652;QD=22.55;ReadPosRankSum=1.695;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4194,480,0 chrXVI 222884 . A T 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;DP=202;Dels=0.00;FS=3.658;HaplotypeScore=5.8171;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.720;QD=22.11;ReadPosRankSum=-1.303;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4467,466,0 chrXVI 222905 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.33;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4521,504,0 chrXVI 222908 . T G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=205;Dels=0.00;FS=8.098;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.246;QD=20.60;ReadPosRankSum=2.402;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4223,480,0 chrXVI 222957 . G C 4388.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.6358;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.04;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,214:219:99:4388,501,0 chrXVI 223697 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=232;Dels=0.00;FS=3.105;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.507;QD=20.05;ReadPosRankSum=1.687;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4651,537,0 chrXVI 223706 . C T 4958.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.1606;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.57;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4958,543,0 chrXVI 224069 . T G 2322 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.54;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2355,273,0 chrXVI 224305 . T G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=2.621;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.036;QD=23.10;ReadPosRankSum=2.378;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:2,101:105:99:2458,279,0 chrXVI 224569 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.8742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3302,363,0 chrXVI 224707 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.2083;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.38;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4348,480,0 chrXVI 224815 . T C 5170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=227;Dels=0.00;FS=4.913;HaplotypeScore=17.3251;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.199;QD=22.78;ReadPosRankSum=3.414;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:4,220:227:99:5170,603,0 chrXVI 224848 . A G 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=3.882;HaplotypeScore=8.1951;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.543;QD=22.87;ReadPosRankSum=1.685;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5032,570,0 chrXVI 225172 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4032,456,0 chrXVI 225206 . T C 4386.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4386,504,0 chrXVI 225452 . G T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5097;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.70;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3457,381,0 chrXVI 225486 . T A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.6214;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.91;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3826,420,0 chrXVI 225550 . A G 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.5825;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.775;QD=20.54;ReadPosRankSum=1.459;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3175,375,0 chrXVI 225670 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.78;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2880,318,0 chrXVI 225805 . C A 2787 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.45;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2820,312,0 chrXVI 225876 . T G 1967 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.62;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2000,225,0 chrXVI 225893 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.89;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1478,165,0 chrXVI 226103 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.45;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1604,177,0 chrXVI 226160 . T A 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.052;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.336;QD=23.34;ReadPosRankSum=2.350;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2344,258,0 chrXVI 226313 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.40;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3270,381,0 chrXVI 226508 . G A 5556.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.54;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5556,612,0 chrXVI 226571 . C A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=20.02;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4465,492,0 chrXVI 226573 . A C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=223;Dels=0.00;FS=3.009;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-2.164;QD=18.58;ReadPosRankSum=2.427;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:2,213:223:99:4144,474,0 chrXVI 226604 . C T 4841.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=4.1454;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.06;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:4841,534,0 chrXVI 226631 . C T 4891.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.88;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:4891,543,0 chrXVI 226745 . C G 3586.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=17.93;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3586,420,0 chrXVI 226835 . C A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=17.55;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:4423,501,0 chrXVI 226841 . C G 4039.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.19;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:4039,471,0 chrXVI 226928 . T C 5476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.4555;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.217;QD=21.99;ReadPosRankSum=1.718;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5476,627,0 chrXVI 227039 . G A 5043.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.41;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5043,561,0 chrXVI 227828 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.2792;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.990;QD=21.58;ReadPosRankSum=1.639;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2471,291,0 chrXVI 227901 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.63;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2845,312,0 chrXVI 227925 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.55;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3391,387,0 chrXVI 228043 . A G 3036 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3069,371,0 chrXVI 228253 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.6500;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.10;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4273,471,0 chrXVI 229246 . A C 5422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.2729;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.089;QD=23.07;ReadPosRankSum=1.988;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:5422,638,0 chrXVI 229383 . G C 3806.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=18.66;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:3806,438,0 chrXVI 229636 . T C 2702 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=19.44;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2735,324,0 chrXVI 229768 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2996,327,0 chrXVI 229960 . A G 2632 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2665,309,0 chrXVI 230032 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.84;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2560,282,0 chrXVI 230063 . G C 2323 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.3796;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.74;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,108:112:99:2356,267,0 chrXVI 230335 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.06;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2408,273,0 chrXVI 230413 . G A 2234 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2267,249,0 chrXVI 230687 . T A 2233 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.68;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2266,249,0 chrXVI 231042 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.61;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1805,198,0 chrXVI 231052 . T C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.692;QD=18.39;ReadPosRankSum=1.692;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1633,186,0 chrXVI 231144 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2807,318,0 chrXVI 231179 . T G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.253;QD=23.11;ReadPosRankSum=1.676;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2899,342,0 chrXVI 231457 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.709;QD=22.59;ReadPosRankSum=1.687;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3457,396,0 chrXVI 231483 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.75;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3241,354,0 chrXVI 232109 . G T 2938 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.89;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2971,327,0 chrXVI 232382 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.46;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2144,240,0 chrXVI 232435 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2642,291,0 chrXVI 232560 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.10;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3440,378,0 chrXVI 232568 . T G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.63;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3424,396,0 chrXVI 232790 . G C 3637.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.87;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3637,431,0 chrXVI 232867 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.43;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3248,369,0 chrXVI 232929 . T C 2422 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.81;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2455,276,0 chrXVI 232935 . T C 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=3.039;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=0.445;QD=16.91;ReadPosRankSum=2.415;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2417,273,0 chrXVI 232961 . T C 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.988;QD=18.68;ReadPosRankSum=1.709;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2817,324,0 chrXVI 233007 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.72;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2871,321,0 chrXVI 233841 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.34;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3314,369,0 chrXVI 234171 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.36;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2511,285,0 chrXVI 234189 . C A 2580 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.81;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2613,288,0 chrXVI 235074 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.02;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3338,369,0 chrXVI 235107 . A G 2691 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.53;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2724,315,0 chrXVI 235149 . A G 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=3.181;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.600;QD=19.66;ReadPosRankSum=1.699;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2078,249,0 chrXVI 235155 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.91;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2291,255,0 chrXVI 235196 . G C 2650 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.70;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2683,309,0 chrXVI 235240 . A G 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=3.820;HaplotypeScore=14.0500;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.567;QD=20.27;ReadPosRankSum=1.685;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3033,362,0 chrXVI 235371 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.64;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2889,318,0 chrXVI 235605 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=15.6150;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.61;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2378,267,0 chrXVI 235830 . A C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.054;QD=19.52;ReadPosRankSum=1.651;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2531,285,0 chrXVI 235850 . A G 2413 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.94;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2446,279,0 chrXVI 235895 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.62;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2702,309,0 chrXVI 235980 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.08;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2541,279,0 chrXVI 236129 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.99;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1943,213,0 chrXVI 236142 . C A 1984 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.64;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2017,222,0 chrXVI 236505 . T C 3048 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.19;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3081,369,0 chrXVI 236616 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=7.034;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-2.040;QD=21.13;ReadPosRankSum=2.342;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2442,279,0 chrXVI 236664 . A G 2816 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.35;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2849,321,0 chrXVI 236829 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.01;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4093,453,0 chrXVI 236844 . T A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.31;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3704,396,0 chrXVI 236868 . A T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.40;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3381,375,0 chrXVI 236925 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.11;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3262,372,0 chrXVI 237102 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.92;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3683,411,0 chrXVI 237235 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.69;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4051,447,0 chrXVI 237270 . G T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1320;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.26;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3444,390,0 chrXVI 237294 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.82;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3287,366,0 chrXVI 237332 . A G 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.003;QD=22.51;ReadPosRankSum=1.671;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2599,297,0 chrXVI 237387 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.45;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2323,252,0 chrXVI 237675 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.23;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2286,255,0 chrXVI 237745 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.7336;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.834;QD=22.95;ReadPosRankSum=1.706;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3131,363,0 chrXVI 237880 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.448;QD=22.20;ReadPosRankSum=1.708;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3207,366,0 chrXVI 238051 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.880;QD=22.60;ReadPosRankSum=1.677;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2880,327,0 chrXVI 238082 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.87;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2869,318,0 chrXVI 238111 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=129;Dels=0.00;FS=3.079;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.299;QD=22.12;ReadPosRankSum=1.705;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2886,333,0 chrXVI 238515 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2903,318,0 chrXVI 238556 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.08;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2387,270,0 chrXVI 238578 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.27;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2011,216,0 chrXVI 238659 . T G 2973 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.50;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3006,345,0 chrXVI 238781 . T C 2646 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.81;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2679,309,0 chrXVI 238845 . T C 3154 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.53;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3187,369,0 chrXVI 238973 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.00;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1593,174,0 chrXVI 238991 . A G 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.322;QD=17.28;ReadPosRankSum=1.652;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1519,180,0 chrXVI 239172 . A G 917 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.51;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:950,117,0 chrXVI 239335 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.20;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2075,228,0 chrXVI 239574 . A G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.468;QD=21.25;ReadPosRankSum=1.703;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2540,300,0 chrXVI 239629 . A T 2890 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.31;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2923,324,0 chrXVI 239668 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.75;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3239,351,0 chrXVI 239686 . T C 3042 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.53;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3075,351,0 chrXVI 239952 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.334;QD=22.80;ReadPosRankSum=1.709;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3375,390,0 chrXVI 240128 . C T 2328 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.16;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2361,258,0 chrXVI 240133 . C G 2243 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.96;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2276,258,0 chrXVI 240215 . G A 3065 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.40;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3098,339,0 chrXVI 240336 . C A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.92;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3468,378,0 chrXVI 240403 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.80;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4261,486,0 chrXVI 240445 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.31;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4080,444,0 chrXVI 240478 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7619;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.137;QD=22.61;ReadPosRankSum=-0.159;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3708,405,0 chrXVI 240681 . C G 3016 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.33;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3049,363,0 chrXVI 240946 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.132;QD=21.88;ReadPosRankSum=1.713;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4069,468,0 chrXVI 241045 . G C 2854 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.10;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,137:142:99:2887,324,0 chrXVI 241053 . G C 2675 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.96;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2708,312,0 chrXVI 241174 . A C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=2.952;HaplotypeScore=12.6688;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.260;QD=23.48;ReadPosRankSum=2.418;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3710,420,0 chrXVI 241261 . G T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.85;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4091,450,0 chrXVI 241467 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7592;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.28;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3794,429,0 chrXVI 241650 . T C 2741 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.41;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2774,324,0 chrXVI 241664 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.41;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2646,297,0 chrXVI 241702 . A G 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=127;Dels=0.00;FS=2.757;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.849;QD=19.39;ReadPosRankSum=2.333;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2496,285,0 chrXVI 242019 . C G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.15;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3634,417,0 chrXVI 242099 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3779,455,0 chrXVI 242224 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=205;Dels=0.00;FS=2.917;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.054;QD=17.53;ReadPosRankSum=2.413;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:3593,431,0 chrXVI 242227 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.5517;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.26;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:3671,405,0 chrXVI 242326 . C T 5663.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.10;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5663,624,0 chrXVI 242449 . A G 6463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=281;Dels=0.00;FS=6.067;HaplotypeScore=9.0729;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.965;QD=23.00;ReadPosRankSum=2.388;SB=-3.398e+03 GT:AD:DP:GQ:PL 1/1:2,279:281:99:6463,761,0 chrXVI 242761 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.40;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3563,390,0 chrXVI 243021 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.160;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.558;QD=21.12;ReadPosRankSum=1.644;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2546,294,0 chrXVI 243049 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.61;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2611,285,0 chrXVI 243556 . G T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9131;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.57;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3430,372,0 chrXVI 244227 . A G 475 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=14.84;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:60:508,60,0 chrXVI 244301 . G A 845 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:96:878,96,0 chrXVI 244463 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.76;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1403,159,0 chrXVI 244466 . T G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=0.968;QD=19.47;ReadPosRankSum=1.579;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1357,153,0 chrXVI 244502 . A G 1886 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.05;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1919,216,0 chrXVI 244562 . T C 2713 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2746,309,0 chrXVI 244633 . A G 2561 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.87;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2594,294,0 chrXVI 244724 . A G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.986;QD=21.90;ReadPosRankSum=1.643;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2617,297,0 chrXVI 244785 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2592,291,0 chrXVI 244939 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.498;QD=23.12;ReadPosRankSum=1.706;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3108,357,0 chrXVI 245420 . C T 3181 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.09;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3214,351,0 chrXVI 245492 . T C 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=4.102;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.880;QD=18.46;ReadPosRankSum=1.677;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2377,282,0 chrXVI 245496 . C T 2490 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.76;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2523,276,0 chrXVI 245843 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.33;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1708,189,0 chrXVI 245873 . A G 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.436;QD=21.56;ReadPosRankSum=1.690;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1801,207,0 chrXVI 245930 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.74;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2693,297,0 chrXVI 245982 . A T 3098 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.78;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3131,342,0 chrXVI 246320 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.9633;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.67;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3023,330,0 chrXVI 246509 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.42;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2963,327,0 chrXVI 246539 . A T 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=113;Dels=0.00;FS=11.041;HaplotypeScore=5.0468;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.509;QD=20.99;ReadPosRankSum=2.813;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2405,267,0 chrXVI 246558 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.86;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2744,300,0 chrXVI 247112 . A C 2988 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.64;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3021,354,0 chrXVI 247153 . C A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.95;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3420,375,0 chrXVI 247661 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.29;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3513,396,0 chrXVI 247685 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3234;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.031;QD=19.44;ReadPosRankSum=1.691;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3285,372,0 chrXVI 247847 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.460;QD=20.32;ReadPosRankSum=1.710;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3244,369,0 chrXVI 247931 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.41;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4297,477,0 chrXVI 248123 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.8179;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.65;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4234,468,0 chrXVI 249056 . G A 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.3502;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.755;QD=22.53;ReadPosRankSum=-1.057;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4416,459,0 chrXVI 249242 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.99;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3422,402,0 chrXVI 249257 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=162;Dels=0.00;FS=4.260;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.299;QD=18.18;ReadPosRankSum=1.667;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:2978,365,0 chrXVI 249494 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.14;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3524,393,0 chrXVI 249821 . A G 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=216;Dels=0.00;FS=3.304;HaplotypeScore=17.3084;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.049;QD=21.87;ReadPosRankSum=1.716;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4723,540,0 chrXVI 250364 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.33;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2315,279,0 chrXVI 250477 . A G 1093 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.62;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1126,129,0 chrXVI 250784 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1098,120,0 chrXVI 250949 . T C 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.538;QD=20.61;ReadPosRankSum=1.700;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2238,264,0 chrXVI 251068 . T C 4232.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4232,477,0 chrXVI 251210 . A T 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=3.262;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.222;QD=22.13;ReadPosRankSum=1.697;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4315,492,0 chrXVI 251405 . C A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.05;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3417,387,0 chrXVI 251492 . C G 4279.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.38;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4279,492,0 chrXVI 251559 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.8304;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.89;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3891,432,0 chrXVI 251641 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3976,432,0 chrXVI 251753 . G T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.65;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3307,378,0 chrXVI 251772 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.07;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3332,398,0 chrXVI 252004 . A G 1304 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.48;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1337,153,0 chrXVI 252117 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=24.79;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3082,333,0 chrXVI 252307 . T A 85.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=522.8903;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.721;QD=0.69;ReadPosRankSum=-3.271;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:114,10:124:99:115,0,264 chrXVI 252310 . T A 70.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;DP=122;Dels=0.00;FS=3.573;HaplotypeScore=358.5839;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.066;QD=0.57;ReadPosRankSum=-1.938;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:115,7:122:99:100,0,289 chrXVI 252316 . T A 573 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.951;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=6.6094;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.048;QD=4.44;ReadPosRankSum=2.296;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:69:606,69,0 chrXVI 252340 . A T 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.387;DP=138;Dels=0.00;FS=2.668;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;MQRankSum=1.184;QD=7.48;ReadPosRankSum=7.377;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:31,107:138:83:1065,83,0 chrXVI 252362 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=13.68;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:1811,198,0 chrXVI 252372 . T A 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.530;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;MQRankSum=-1.133;QD=14.84;ReadPosRankSum=1.628;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2007,222,0 chrXVI 252490 . A G 2905 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=21.05;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2938,348,0 chrXVI 252501 . A G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;MQRankSum=-1.086;QD=20.62;ReadPosRankSum=1.680;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:2858,327,0 chrXVI 252578 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=140;Dels=0.00;FS=5.844;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-1.153;QD=18.29;ReadPosRankSum=2.920;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:3,135:140:99:2593,297,0 chrXVI 252586 . C T 2679 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.99;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2712,297,0 chrXVI 252618 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.37;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2789,309,0 chrXVI 252708 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.99;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3243,366,0 chrXVI 252773 . C T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=24.15;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:4082,453,0 chrXVI 252829 . C T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.8403;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.59;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3931,438,0 chrXVI 253090 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.38;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3312,366,0 chrXVI 253285 . T A 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.737;QD=18.97;ReadPosRankSum=1.286;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1968,225,0 chrXVI 253286 . T C 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.554;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.000;QD=18.91;ReadPosRankSum=1.630;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1981,228,0 chrXVI 253297 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.69;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2199,243,0 chrXVI 253375 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.98;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2677,294,0 chrXVI 253447 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.39;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2697,303,0 chrXVI 253600 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.7296;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.36;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2895,324,0 chrXVI 253655 . A G 3215 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9341;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.80;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3248,369,0 chrXVI 253677 . T A 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.707;DP=160;Dels=0.00;FS=7.810;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.765;QD=20.17;ReadPosRankSum=3.776;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:5,155:160:99:3260,360,0 chrXVI 253690 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.98;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3376,393,0 chrXVI 253842 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=170;Dels=0.00;FS=5.914;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.383;QD=21.51;ReadPosRankSum=2.827;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3657,432,0 chrXVI 253892 . T C 4556.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.5820;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.59;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4556,522,0 chrXVI 253909 . A T 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3565;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.804;QD=20.80;ReadPosRankSum=1.701;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4659,525,0 chrXVI 253985 . G T 4339.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.03;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:4339,474,0 chrXVI 254009 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.23;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3801,423,0 chrXVI 254020 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.89;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3343,372,0 chrXVI 254053 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.72;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3010,336,0 chrXVI 254101 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=169;Dels=0.00;FS=3.024;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.298;QD=20.92;ReadPosRankSum=2.391;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3535,420,0 chrXVI 254117 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.86;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4153,465,0 chrXVI 254355 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=1;QD=20.00;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3440,378,0 chrXVI 254454 . A G 2999 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.07;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3032,348,0 chrXVI 254494 . A C 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.269;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.530;QD=23.31;ReadPosRankSum=1.703;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2853,321,0 chrXVI 254696 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.79;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2631,288,0 chrXVI 254741 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=20.64;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2200,246,0 chrXVI 254772 . A T 1767 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=17.85;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1800,195,0 chrXVI 254778 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.42;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1774,195,0 chrXVI 254813 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=17.55;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1753,201,0 chrXVI 255611 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.59;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3082,336,0 chrXVI 255970 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.45;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2704,291,0 chrXVI 256183 . G T 2271 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.91;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2304,255,0 chrXVI 256359 . T G 2077 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2110,246,0 chrXVI 256672 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.09;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1580,171,0 chrXVI 257215 . A G 2928 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.62;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2961,339,0 chrXVI 257538 . A G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=147;Dels=0.00;FS=5.483;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.555;QD=20.89;ReadPosRankSum=2.952;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3104,372,0 chrXVI 257730 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.81;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4119,462,0 chrXVI 257774 . G A 5081.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5081,552,0 chrXVI 257972 . C T 6255.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=13.9998;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.79;SB=-3.640e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:6255,684,0 chrXVI 258230 . C T 5625.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=8.9635;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.31;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5625,639,0 chrXVI 258271 . T C 4673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=247;Dels=0.00;FS=5.203;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-1.995;QD=18.92;ReadPosRankSum=2.465;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:4,241:247:99:4673,534,0 chrXVI 258272 . A T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.58;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4796,531,0 chrXVI 258329 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.08;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:3895,455,0 chrXVI 258359 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=191;Dels=0.00;FS=2.616;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.239;QD=17.88;ReadPosRankSum=2.398;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3416,402,0 chrXVI 258364 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.0053;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.94;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3693,405,0 chrXVI 258671 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=181;Dels=0.00;FS=6.966;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.102;QD=23.78;ReadPosRankSum=2.422;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4304,483,0 chrXVI 258925 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.9430;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.23;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4228,468,0 chrXVI 258984 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.89;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3844,423,0 chrXVI 258986 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.76;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3861,423,0 chrXVI 259333 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.858;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=-1.560;QD=18.32;ReadPosRankSum=1.708;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2635,300,0 chrXVI 259341 . G T 2440 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=17.43;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2473,276,0 chrXVI 259360 . T C 2307 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=17.48;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2340,267,0 chrXVI 259417 . G T 1636 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.25;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1669,192,0 chrXVI 259430 . C G 1734 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.95;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1767,204,0 chrXVI 259987 . C A 6291.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.6872;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.83;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6291,702,0 chrXVI 260089 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.77;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4403,489,0 chrXVI 260098 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=3.026;HaplotypeScore=8.1381;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.405;QD=19.08;ReadPosRankSum=2.426;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:2,207:213:99:4065,468,0 chrXVI 260252 . C T 4820.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=22.5982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.61;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:4820,528,0 chrXVI 260626 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;DP=170;Dels=0.00;FS=11.484;HaplotypeScore=17.1157;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.154;QD=21.79;ReadPosRankSum=2.876;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3704,417,0 chrXVI 260830 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=20.95;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2379,267,0 chrXVI 260871 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.6371;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.72;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2374,270,0 chrXVI 261137 . C G 1566 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1599,183,0 chrXVI 261357 . T A 1446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=6.799;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.267;QD=21.58;ReadPosRankSum=1.525;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1479,165,0 chrXVI 261425 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1468,162,0 chrXVI 261906 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3771,417,0 chrXVI 262189 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.36;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3621,402,0 chrXVI 262213 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=4.337;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.527;QD=20.86;ReadPosRankSum=1.687;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3204,369,0 chrXVI 262228 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.97;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3295,360,0 chrXVI 262452 . T G 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=4.733;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.046;QD=21.74;ReadPosRankSum=1.671;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2490,288,0 chrXVI 262502 . T G 2592 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.90;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2625,312,0 chrXVI 262681 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2833,339,0 chrXVI 262966 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.583;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.307;QD=22.78;ReadPosRankSum=1.710;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3622,434,0 chrXVI 263263 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=3.151;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.240;QD=20.95;ReadPosRankSum=1.714;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:3981,453,0 chrXVI 263290 . C T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.53;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4219,465,0 chrXVI 263320 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=193;Dels=0.00;FS=6.903;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.569;QD=18.24;ReadPosRankSum=2.386;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:3521,428,0 chrXVI 263635 . C A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.55;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4591,504,0 chrXVI 263648 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.76;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4592,504,0 chrXVI 263710 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=180;Dels=0.00;FS=2.980;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.476;QD=20.21;ReadPosRankSum=2.408;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:3637,417,0 chrXVI 263733 . A T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.31;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3905,426,0 chrXVI 263788 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.64;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3378,375,0 chrXVI 263800 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.43;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3400,375,0 chrXVI 263823 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.89;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3457,381,0 chrXVI 263857 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.564;QD=16.26;ReadPosRankSum=1.691;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2781,333,0 chrXVI 264124 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.40;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2379,270,0 chrXVI 264248 . T A 2942 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.79;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2975,333,0 chrXVI 264333 . A T 2721 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.67;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2754,306,0 chrXVI 264512 . G T 1843 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=15.23;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1876,207,0 chrXVI 264524 . A C 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=3.409;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-1.276;QD=14.75;ReadPosRankSum=1.702;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1714,195,0 chrXVI 264575 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.26;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2787,315,0 chrXVI 264609 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.296;QD=22.99;ReadPosRankSum=1.708;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3311,378,0 chrXVI 264641 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.2562;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.70;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3298,360,0 chrXVI 264690 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.26;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3545,428,0 chrXVI 264712 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.94;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3589,414,0 chrXVI 264726 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=18.95;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3563,408,0 chrXVI 264772 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.8456;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.94;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3301,372,0 chrXVI 264796 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3187;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.69;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3308,378,0 chrXVI 264839 . A C 2884 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=16.02;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2917,327,0 chrXVI 264882 . T A 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=5.547;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.997;QD=18.99;ReadPosRankSum=1.669;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3167,345,0 chrXVI 264964 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.33;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3126,345,0 chrXVI 265144 . T C 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=134;Dels=0.00;FS=2.946;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.202;QD=19.45;ReadPosRankSum=0.395;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2639,315,0 chrXVI 265153 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.06;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2750,300,0 chrXVI 265309 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.26;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3034,327,0 chrXVI 265513 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.74;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,97:101:99:2330,264,0 chrXVI 265768 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.50;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3504,393,0 chrXVI 265792 . T C 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.941;QD=21.59;ReadPosRankSum=1.697;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4253,486,0 chrXVI 265861 . A C 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=171;Dels=0.00;FS=9.500;HaplotypeScore=13.4336;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.018;QD=21.71;ReadPosRankSum=2.959;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3713,443,0 chrXVI 266023 . C T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.0510;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.51;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4184,459,0 chrXVI 266276 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.4955;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.17;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3060,348,0 chrXVI 266422 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=19.9539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3925,450,0 chrXVI 267005 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.6127;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3984,438,0 chrXVI 267098 . T G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.577;QD=22.14;ReadPosRankSum=1.698;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4473,513,0 chrXVI 267298 . C T 4406.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.7902;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.83;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4406,480,0 chrXVI 267461 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.52;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3529,390,0 chrXVI 267476 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.546;DP=164;Dels=0.00;FS=4.256;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.361;QD=18.87;ReadPosRankSum=2.757;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:5,158:164:99:3128,357,0 chrXVI 267573 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.5639;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.65;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4179,468,0 chrXVI 267830 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=7.225;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.931;QD=20.15;ReadPosRankSum=2.373;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2632,300,0 chrXVI 268208 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.65;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2660,294,0 chrXVI 268415 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=151;Dels=0.00;FS=5.250;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.817;QD=23.49;ReadPosRankSum=3.378;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3547,402,0 chrXVI 268529 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.72;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2901,318,0 chrXVI 268868 . G A 4315.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=20.4270;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.79;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4315,477,0 chrXVI 269012 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.82;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3573,393,0 chrXVI 269309 . A T 2850 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2883,318,0 chrXVI 270158 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2769,312,0 chrXVI 270257 . C G 2767 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.45;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2800,327,0 chrXVI 270515 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.094;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.254;QD=18.57;ReadPosRankSum=1.666;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2948,339,0 chrXVI 270525 . A G 3015 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.16;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3048,351,0 chrXVI 270630 . T C 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=187;Dels=0.00;FS=2.929;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.020;QD=22.96;ReadPosRankSum=2.410;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4293,498,0 chrXVI 271011 . C T 593 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.97;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:72:626,72,0 chrXVI 271083 . T A 983 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1016,117,0 chrXVI 271095 . C T 1163 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1196,132,0 chrXVI 271460 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.99;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3610,396,0 chrXVI 271512 . G A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.76;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4300,471,0 chrXVI 271555 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.77;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4397,486,0 chrXVI 271666 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.37;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3739,414,0 chrXVI 271971 . G C 4247.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.72;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4247,486,0 chrXVI 271992 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.6856;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.41;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4081,456,0 chrXVI 272233 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.34;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3687,420,0 chrXVI 272468 . G T 3608.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.87;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3608,399,0 chrXVI 272485 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.66;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3616,393,0 chrXVI 273202 . A G 2651 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.73;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2684,306,0 chrXVI 273221 . A T 2735 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.42;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2768,303,0 chrXVI 273874 . T C 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=91;Dels=0.00;FS=5.544;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.506;QD=18.09;ReadPosRankSum=2.877;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:3,87:91:99:1679,189,0 chrXVI 273875 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.27;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1696,189,0 chrXVI 274025 . T C 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=84;Dels=0.00;FS=2.881;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.440;QD=21.83;ReadPosRankSum=2.391;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1867,219,0 chrXVI 274370 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=177;Dels=0.00;FS=2.658;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.950;QD=22.50;ReadPosRankSum=2.408;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3983,453,0 chrXVI 274407 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.93;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3876,426,0 chrXVI 274818 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=17.4017;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.73;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3249,354,0 chrXVI 275384 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.59;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2319,255,0 chrXVI 275387 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.25;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2260,249,0 chrXVI 275818 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.48;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3019,336,0 chrXVI 275836 . C A 2813 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.50;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2846,312,0 chrXVI 275949 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.64;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1721,195,0 chrXVI 276243 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.79;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2700,300,0 chrXVI 276441 . T A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=25.15;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3621,399,0 chrXVI 276666 . T G 624.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.321;DP=151;Dels=0.00;FS=19.251;HaplotypeScore=96.2657;MLEAC=1;MLEAF=0.500;MQ=45.68;MQ0=0;MQRankSum=3.523;QD=4.13;ReadPosRankSum=-4.481;SB=-2.500e+02 GT:AD:DP:GQ:PL 0/1:104,46:151:99:654,0,683 chrXVI 276668 . C T 609.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.589;DP=149;Dels=0.00;FS=21.916;HaplotypeScore=95.4770;MLEAC=1;MLEAF=0.500;MQ=45.56;MQ0=0;MQRankSum=3.485;QD=4.09;ReadPosRankSum=-5.312;SB=-2.200e+02 GT:AD:DP:GQ:PL 0/1:105,44:149:99:639,0,772 chrXVI 276934 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.90;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3549,390,0 chrXVI 277322 . T C 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.565;DP=102;Dels=0.00;FS=4.958;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.511;QD=20.89;ReadPosRankSum=3.673;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:5,97:102:99:2164,252,0 chrXVI 277547 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.03;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3250,387,0 chrXVI 277562 . G T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.10;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3395,372,0 chrXVI 277807 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.06;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2546,279,0 chrXVI 278394 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.52;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3411,375,0 chrXVI 278872 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.29;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4192,474,0 chrXVI 279109 . G A 4307.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.03;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4307,477,0 chrXVI 279130 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=193;Dels=0.00;FS=3.313;HaplotypeScore=7.8062;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.655;QD=21.62;ReadPosRankSum=1.553;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4172,459,0 chrXVI 279169 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6391;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.64;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4461,504,0 chrXVI 279229 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.20;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3794,426,0 chrXVI 279235 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=2.986;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.622;QD=20.19;ReadPosRankSum=2.391;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3392,393,0 chrXVI 279259 . G C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.47;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3247,375,0 chrXVI 279412 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=3.299;HaplotypeScore=10.9686;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.253;QD=20.88;ReadPosRankSum=1.671;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3612,420,0 chrXVI 279568 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.67;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2677,297,0 chrXVI 279637 . A G 1898 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=15.18;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1931,231,0 chrXVI 279682 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.04;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2284,249,0 chrXVI 279722 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.98;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1835,210,0 chrXVI 279843 . C T 2778 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8588;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.40;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2811,309,0 chrXVI 279975 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3644,429,0 chrXVI 280422 . A G 3139 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.96;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3172,360,0 chrXVI 280470 . A G 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=4.705;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.107;QD=24.24;ReadPosRankSum=1.652;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3184,360,0 chrXVI 280994 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.57;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2313,255,0 chrXVI 281659 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.2761;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.045;QD=21.84;ReadPosRankSum=1.672;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2588,300,0 chrXVI 281703 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.7373;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.597;QD=23.45;ReadPosRankSum=0.112;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3611,393,0 chrXVI 281895 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.4058;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.19;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3352,387,0 chrXVI 281920 . G T 3662.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.54;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3662,417,0 chrXVI 281956 . C A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.32;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4114,456,0 chrXVI 282075 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=18.0977;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.14;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3609,399,0 chrXVI 282264 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.57;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1802,216,0 chrXVI 282326 . C G 2005 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.79;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2038,234,0 chrXVI 282453 . T G 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.806;QD=20.69;ReadPosRankSum=1.698;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2123,243,0 chrXVI 282512 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.46;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1650,180,0 chrXVI 283162 . A C 653 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:78:686,78,0 chrXVI 283277 . G A 738 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:84:771,84,0 chrXVI 283933 . C T 5998.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.01;FS=0.000;HaplotypeScore=8.6655;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.83;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:5998,654,0 chrXVI 283936 . T C 5721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=7.6751;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.475;QD=20.00;ReadPosRankSum=3.210;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:4,280:286:99:5721,654,0 chrXVI 284100 . C T 6038.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.61;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:6038,657,0 chrXVI 284115 . T C 5788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=306;Dels=0.00;FS=3.704;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=1.028;QD=18.92;ReadPosRankSum=1.698;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:1,304:306:99:5788,657,0 chrXVI 284142 . A T 5617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.872;QD=19.57;ReadPosRankSum=1.684;SB=-3.288e+03 GT:AD:DP:GQ:PL 1/1:1,285:287:99:5617,621,0 chrXVI 284388 . T C 5012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=254;Dels=0.00;FS=3.561;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.921;QD=19.73;ReadPosRankSum=1.718;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:5012,590,0 chrXVI 284403 . T C 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=249;Dels=0.00;FS=3.750;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.355;QD=20.15;ReadPosRankSum=1.718;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5017,593,0 chrXVI 284476 . T G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.09;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3797,441,0 chrXVI 284591 . C T 4588.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.7398;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.38;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4588,504,0 chrXVI 284661 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=7.653;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.527;QD=21.98;ReadPosRankSum=2.373;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3539,408,0 chrXVI 284769 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=185;Dels=0.00;FS=6.086;HaplotypeScore=17.5045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.066;QD=20.69;ReadPosRankSum=2.918;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3828,441,0 chrXVI 284937 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.41;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4025,465,0 chrXVI 285327 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.164;QD=22.79;ReadPosRankSum=2.385;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:2,149:154:99:3510,396,0 chrXVI 285375 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.82;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3404,390,0 chrXVI 285465 . C T 2679 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.14;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2712,297,0 chrXVI 286085 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.9754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2837,312,0 chrXVI 286209 . A T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.46;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3378,369,0 chrXVI 286316 . T A 2252 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2285,261,0 chrXVI 286391 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2572,291,0 chrXVI 286502 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.35;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2744,306,0 chrXVI 286721 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.394;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.512;QD=22.11;ReadPosRankSum=1.635;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3173,366,0 chrXVI 286752 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=160;Dels=0.00;FS=5.434;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.095;QD=20.06;ReadPosRankSum=2.880;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3243,372,0 chrXVI 286787 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.88;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3174,348,0 chrXVI 286802 . G T 3087 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.79;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3120,342,0 chrXVI 286828 . T A 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.559;HaplotypeScore=2.5493;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.619;QD=19.38;ReadPosRankSum=1.683;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2746,303,0 chrXVI 286865 . T A 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=152;Dels=0.00;FS=3.895;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=-0.593;QD=19.95;ReadPosRankSum=1.664;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3065,339,0 chrXVI 286890 . G C 2760 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=20.00;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2793,321,0 chrXVI 286901 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=19.89;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2738,300,0 chrXVI 286906 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=18.03;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2467,282,0 chrXVI 286979 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.73;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1438,162,0 chrXVI 287057 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.418;QD=22.85;ReadPosRankSum=1.702;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,115:119:99:2752,321,0 chrXVI 287066 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=24.25;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3113,345,0 chrXVI 287114 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=22.73;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3193,357,0 chrXVI 287130 . T C 2924 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.74;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2957,342,0 chrXVI 287198 . T A 2439 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.97;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2472,270,0 chrXVI 287238 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.03;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2556,279,0 chrXVI 287349 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.5491;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.34;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3170,354,0 chrXVI 287422 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=4.314;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.706;QD=22.14;ReadPosRankSum=1.706;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3022,342,0 chrXVI 287664 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.558;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=-0.160;QD=23.70;ReadPosRankSum=1.709;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3602,411,0 chrXVI 288762 . T C 4148.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4148,474,0 chrXVI 289053 . G T 2775 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.02;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2808,309,0 chrXVI 289088 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.97;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2861,315,0 chrXVI 289243 . C G 1819 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.21;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1852,207,0 chrXVI 289247 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.79;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1794,198,0 chrXVI 289277 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.05;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1978,216,0 chrXVI 289393 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.11;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2494,273,0 chrXVI 289442 . A G 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.365;QD=22.89;ReadPosRankSum=1.687;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1773,201,0 chrXVI 289469 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.37;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1572,180,0 chrXVI 289490 . C A 1652 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.32;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1685,189,0 chrXVI 289567 . A G 2153 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.19;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2186,246,0 chrXVI 289908 . G T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.66;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4461,489,0 chrXVI 290164 . C G 3281.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3281,387,0 chrXVI 290454 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.11;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3834,438,0 chrXVI 290800 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7281;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.810;QD=23.94;ReadPosRankSum=1.710;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3711,426,0 chrXVI 291046 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=20.47;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2756,315,0 chrXVI 291053 . T C 2824 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=20.92;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2857,318,0 chrXVI 291114 . T C 2312 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.28;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2345,267,0 chrXVI 291203 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.06;MQ0=0;QD=15.78;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1690,183,0 chrXVI 291246 . G A 1375 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=12.73;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1408,153,0 chrXVI 291251 . A G 1320 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;MQRankSum=0.467;QD=11.28;ReadPosRankSum=1.702;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:1353,156,0 chrXVI 291252 . A C 1334 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;QD=11.12;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:1367,159,0 chrXVI 291313 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.90;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2206,246,0 chrXVI 291355 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.85;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2704,297,0 chrXVI 292215 . C T 5105.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.7820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5105,564,0 chrXVI 292699 . C G 2186 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.54;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2219,255,0 chrXVI 292958 . T A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.39;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3744,411,0 chrXVI 292964 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=178;Dels=0.00;FS=6.095;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.146;QD=20.19;ReadPosRankSum=2.408;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3593,417,0 chrXVI 293051 . G A 4659.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.84;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4659,522,0 chrXVI 293158 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=173;Dels=0.00;FS=9.184;HaplotypeScore=12.3243;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.192;QD=22.38;ReadPosRankSum=2.960;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3872,444,0 chrXVI 293369 . A G 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=3.412;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.910;QD=23.35;ReadPosRankSum=1.684;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:1,214:218:99:5090,579,0 chrXVI 293816 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.76;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3641,417,0 chrXVI 294083 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3853,441,0 chrXVI 294452 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=171;Dels=0.00;FS=5.936;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.453;QD=21.38;ReadPosRankSum=2.794;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3656,437,0 chrXVI 294899 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=178;Dels=0.00;FS=2.932;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.411;QD=21.43;ReadPosRankSum=2.295;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,173:178:99:3814,450,0 chrXVI 295094 . G T 5922.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.57;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5922,651,0 chrXVI 295127 . C T 4564.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4150;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.82;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4564,519,0 chrXVI 295177 . G A 4894.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.01;FS=0.000;HaplotypeScore=11.7203;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.45;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4894,537,0 chrXVI 295205 . T C 4996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=215;Dels=0.00;FS=3.368;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.089;QD=23.24;ReadPosRankSum=1.684;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4996,570,0 chrXVI 295316 . A G 5393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=240;Dels=0.00;FS=9.024;HaplotypeScore=17.4564;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.185;QD=22.47;ReadPosRankSum=3.424;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:4,236:240:99:5393,624,0 chrXVI 295393 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.4947;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.19;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4476,501,0 chrXVI 295443 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.20;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3943,450,0 chrXVI 295493 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.32;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3881,453,0 chrXVI 295831 . C T 5009.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.41;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5009,567,0 chrXVI 295852 . T C 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=220;Dels=0.00;FS=2.932;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=-0.476;QD=18.67;ReadPosRankSum=2.427;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:4107,483,0 chrXVI 295860 . T G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=17.68;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3678,437,0 chrXVI 295874 . T G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=17.14;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3548,420,0 chrXVI 295921 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.95;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3823,420,0 chrXVI 295944 . A G 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=235;Dels=0.00;FS=2.779;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-1.614;QD=17.49;ReadPosRankSum=2.429;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:4111,474,0 chrXVI 295959 . T C 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=4.015;HaplotypeScore=8.7098;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.849;QD=18.05;ReadPosRankSum=1.704;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:4458,510,0 chrXVI 295997 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=15.6137;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.47;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:4489,486,0 chrXVI 296018 . A C 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=223;Dels=0.00;FS=2.637;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.370;QD=17.85;ReadPosRankSum=2.427;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:3981,476,0 chrXVI 296054 . C T 4562.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.9272;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.62;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4562,507,0 chrXVI 296144 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=1.354;QD=20.66;ReadPosRankSum=1.712;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3637,434,0 chrXVI 296178 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.66;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4102,456,0 chrXVI 296330 . C T 6216.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=22.7618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-3.211e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6216,699,0 chrXVI 296393 . A G 5673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=246;Dels=0.00;FS=7.396;HaplotypeScore=20.6517;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.308;QD=23.06;ReadPosRankSum=2.399;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:2,241:246:99:5673,654,0 chrXVI 297021 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.73;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3856,432,0 chrXVI 297034 . C T 4462.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.3160;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.66;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4462,486,0 chrXVI 297234 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.3707;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.37;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3680,405,0 chrXVI 297546 . T A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.356;DP=173;Dels=0.00;FS=21.342;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.547;QD=0.09;ReadPosRankSum=-2.891;SB=-1.028e+02 GT:AD:DP:GQ:PL 1/1:167,6:173:6:47,6,0 chrXVI 297621 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.4353;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.31;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4387,480,0 chrXVI 297634 . T A 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.244;QD=21.94;ReadPosRankSum=1.665;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4520,492,0 chrXVI 298155 . T C 3073 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.90;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3106,354,0 chrXVI 298195 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.92;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2585,285,0 chrXVI 298280 . T A 1912 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.92;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1945,216,0 chrXVI 298438 . C T 697 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=20.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:34:78:730,78,0 chrXVI 298448 . A T 629 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-1.502;QD=20.97;ReadPosRankSum=1.617;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:72:662,72,0 chrXVI 298468 . T C 312 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=18.35;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:39:345,39,0 chrXVI 298471 . G T 326 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=19.18;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:39:359,39,0 chrXVI 298521 . G A 46.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=4.27;SB=-6.195e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:79,9,0 chrXVI 298533 . G T 389 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.68;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:422,48,0 chrXVI 298756 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.33;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2921,318,0 chrXVI 298907 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.99;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3558,390,0 chrXVI 298955 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.8152;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.24;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4047,468,0 chrXVI 299549 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=134;Dels=0.00;FS=2.926;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.817;QD=21.92;ReadPosRankSum=2.303;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2970,336,0 chrXVI 299678 . G T 2065 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.67;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2098,234,0 chrXVI 299701 . C A 2070 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.50;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2103,234,0 chrXVI 299735 . A T 2051 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=103.6113;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.83;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2084,237,0 chrXVI 299834 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=16.3425;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.534;QD=20.66;ReadPosRankSum=1.707;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2926,336,0 chrXVI 300071 . C T 4535.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.6592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4535,513,0 chrXVI 300401 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.082;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.994;QD=21.35;ReadPosRankSum=1.713;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3907,459,0 chrXVI 300467 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.96;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3417,378,0 chrXVI 300478 . G C 2969 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=17.99;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3002,354,0 chrXVI 300724 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.054;HaplotypeScore=11.2606;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.997;QD=21.44;ReadPosRankSum=1.715;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4266,489,0 chrXVI 301071 . G A 4336.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=23.31;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4336,492,0 chrXVI 301121 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.6169;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.43;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3913,429,0 chrXVI 301187 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8243;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.417;QD=20.83;ReadPosRankSum=2.419;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3416,390,0 chrXVI 301260 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2450;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=20.40;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2461,282,0 chrXVI 301284 . A C 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.282;DP=117;Dels=0.00;FS=1.497;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=41.30;MQ0=0;MQRankSum=-0.967;QD=0.40;ReadPosRankSum=-4.260;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:109,8:117:77:77,0,176 chrXVI 301286 . T C 147.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.889;DP=121;Dels=0.00;FS=2.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.05;MQ0=0;MQRankSum=-1.539;QD=1.21;ReadPosRankSum=5.598;SB=-9.940e+02 GT:AD:DP:GQ:PL 0/1:12,109:121:26:177,0,26 chrXVI 301305 . A G 2215 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=17.44;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2248,258,0 chrXVI 301308 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=17.21;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2219,240,0 chrXVI 301341 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-1.018;QD=18.17;ReadPosRankSum=1.706;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2413,276,0 chrXVI 301444 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.117;QD=22.85;ReadPosRankSum=2.371;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3587,417,0 chrXVI 301533 . A T 2983 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1784;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.12;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3016,339,0 chrXVI 301572 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.07;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3043,357,0 chrXVI 301695 . C G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.2869;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.92;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,163:170:99:3727,423,0 chrXVI 301772 . T C 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.241;QD=22.40;ReadPosRankSum=1.683;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3192,363,0 chrXVI 301922 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.3836;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.82;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3834,432,0 chrXVI 301952 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.58;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3478,396,0 chrXVI 302336 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.305;QD=21.95;ReadPosRankSum=1.708;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3260,375,0 chrXVI 302673 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1880;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.22;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3390,369,0 chrXVI 302738 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=4.814;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.228;QD=22.38;ReadPosRankSum=0.959;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2338,267,0 chrXVI 302825 . T A 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.860;DP=113;Dels=0.00;FS=6.620;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.492;QD=21.79;ReadPosRankSum=-1.187;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2495,238,0 chrXVI 302992 . T A 822 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=24.0078;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=16.12;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:855,99,0 chrXVI 303354 . C T 5386.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.46;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5386,600,0 chrXVI 304183 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.88;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2598,300,0 chrXVI 304195 . T C 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=6.908;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.589;QD=18.92;ReadPosRankSum=2.408;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2285,261,0 chrXVI 304351 . C A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.39;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3322,378,0 chrXVI 304561 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=168;Dels=0.00;FS=3.018;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.243;QD=22.65;ReadPosRankSum=2.361;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3805,426,0 chrXVI 304587 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7386;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.31;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3325,396,0 chrXVI 304635 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.96;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3624,402,0 chrXVI 304734 . A T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.16;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3728,411,0 chrXVI 304831 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.259;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.746;QD=23.63;ReadPosRankSum=1.636;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3402,375,0 chrXVI 304957 . T G 2124 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.47;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2157,246,0 chrXVI 304984 . A G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.476;QD=19.99;ReadPosRankSum=1.700;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2192,249,0 chrXVI 305222 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.03;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1643,189,0 chrXVI 305273 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.5058;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.15;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2351,258,0 chrXVI 305432 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=153;Dels=0.00;FS=2.871;HaplotypeScore=11.3585;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.350;QD=21.54;ReadPosRankSum=2.417;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3295,378,0 chrXVI 305812 . C T 5085.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.87;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5085,561,0 chrXVI 306080 . T C 3051 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.11;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3084,351,0 chrXVI 306198 . A T 2032 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2065,222,0 chrXVI 306244 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2430,282,0 chrXVI 306302 . T C 2120 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=23.56;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2153,243,0 chrXVI 306430 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=23.52;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2949,330,0 chrXVI 306698 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.09;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2596,300,0 chrXVI 306755 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.85;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2014,228,0 chrXVI 307244 . T A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.52;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3816,420,0 chrXVI 307505 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=119;Dels=0.00;FS=9.601;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.513;QD=20.24;ReadPosRankSum=2.941;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2442,288,0 chrXVI 307579 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.49;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2266,249,0 chrXVI 307685 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3263,360,0 chrXVI 307847 . A G 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.560;QD=21.61;ReadPosRankSum=1.645;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4279,509,0 chrXVI 308140 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=189;Dels=0.00;FS=6.821;HaplotypeScore=13.6702;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.438;QD=21.87;ReadPosRankSum=2.423;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4133,471,0 chrXVI 308234 . A G 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6476;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.499;QD=23.01;ReadPosRankSum=1.713;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4073,459,0 chrXVI 308420 . A G 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.3210;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.547;QD=21.40;ReadPosRankSum=1.701;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2451,279,0 chrXVI 308554 . T A 1972 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.54;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2005,228,0 chrXVI 308578 . T G 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=3.583;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.993;QD=21.52;ReadPosRankSum=1.693;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1948,222,0 chrXVI 308669 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1763,192,0 chrXVI 308719 . T C 1726 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.13;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1759,201,0 chrXVI 308781 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=15.73;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1606,183,0 chrXVI 308785 . G T 1598 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=14.40;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1631,183,0 chrXVI 308999 . T C 4689.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.65;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4689,537,0 chrXVI 309089 . G T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4339;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.13;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3829,426,0 chrXVI 309787 . T C 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.852;QD=22.74;ReadPosRankSum=1.676;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4230,506,0 chrXVI 309818 . C T 4798.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.2930;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.11;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4798,525,0 chrXVI 309899 . T A 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=136;Dels=0.00;FS=2.929;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.871;QD=23.26;ReadPosRankSum=2.341;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3197,351,0 chrXVI 309958 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=2.952;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.024;QD=22.46;ReadPosRankSum=2.402;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3504,405,0 chrXVI 310009 . T G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=5.125;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.148;QD=22.31;ReadPosRankSum=1.711;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3703,429,0 chrXVI 310045 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.29;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3432,387,0 chrXVI 310159 . C T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.56;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4298,477,0 chrXVI 310530 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.46;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2591,303,0 chrXVI 310690 . A C 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=10.326;HaplotypeScore=5.7797;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.331;QD=22.78;ReadPosRankSum=2.912;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3394,396,0 chrXVI 310732 . G A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.59;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3368,384,0 chrXVI 310795 . G A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.63;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4581,507,0 chrXVI 310918 . T C 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=202;Dels=0.00;FS=3.001;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.350;QD=22.15;ReadPosRankSum=2.364;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4475,504,0 chrXVI 310946 . C T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.44;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4632,504,0 chrXVI 310970 . A C 5013.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.70;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5013,567,0 chrXVI 311025 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.3310;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.73;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4229,497,0 chrXVI 311060 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.22;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3990,435,0 chrXVI 311427 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.8499;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.93;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2564,288,0 chrXVI 311442 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.73;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2393,273,0 chrXVI 311970 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2655,297,0 chrXVI 312483 . G T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.7818;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4207,468,0 chrXVI 312657 . A T 4861.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.1715;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.04;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4861,537,0 chrXVI 312873 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.36;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1838,227,0 chrXVI 312892 . T A 1565 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=18.41;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1598,180,0 chrXVI 313092 . A G 881 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.81;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:914,105,0 chrXVI 313236 . A G 2407 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.71;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2440,273,0 chrXVI 313357 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.92;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2027,225,0 chrXVI 313494 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2533,276,0 chrXVI 313832 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.06;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2892,321,0 chrXVI 313834 . T C 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=3.552;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.585;QD=18.65;ReadPosRankSum=1.708;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2775,318,0 chrXVI 313954 . C G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.05;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3342,384,0 chrXVI 314083 . C G 2698 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4273;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.44;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2731,312,0 chrXVI 314443 . A G 3116 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.34;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3149,360,0 chrXVI 314461 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=4.138;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.306;QD=21.65;ReadPosRankSum=1.709;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3313,384,0 chrXVI 314704 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.118;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.993;QD=22.20;ReadPosRankSum=1.711;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3686,417,0 chrXVI 314911 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3607,408,0 chrXVI 315182 . T C 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.681;QD=24.68;ReadPosRankSum=1.698;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:5060,573,0 chrXVI 315304 . T C 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=190;Dels=0.00;FS=9.065;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.482;QD=23.35;ReadPosRankSum=3.395;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:4,186:190:99:4436,513,0 chrXVI 315713 . G C 1955 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1988,228,0 chrXVI 316048 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.6724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3825,444,0 chrXVI 316099 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=3.830;HaplotypeScore=12.9095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.607;QD=22.46;ReadPosRankSum=1.710;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3548,408,0 chrXVI 316205 . C G 3104 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3137,366,0 chrXVI 316676 . C G 2911 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.29;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2944,330,0 chrXVI 316765 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.07;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2505,279,0 chrXVI 316953 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.8188;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.82;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3628,431,0 chrXVI 317157 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3880,429,0 chrXVI 317394 . C A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.33;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3820,420,0 chrXVI 317528 . A G 1742 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.23;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1775,201,0 chrXVI 317602 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.84;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1496,162,0 chrXVI 317619 . G C 1194 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=19.57;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1227,141,0 chrXVI 317622 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.31;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1272,138,0 chrXVI 317677 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.63;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1642,180,0 chrXVI 318016 . T C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=115;Dels=0.00;FS=6.697;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.335;QD=20.74;ReadPosRankSum=2.385;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2418,282,0 chrXVI 318049 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.62;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3109,345,0 chrXVI 318072 . T G 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.1053;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.397;QD=21.46;ReadPosRankSum=1.687;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3391,381,0 chrXVI 318508 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.91;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2027,225,0 chrXVI 318535 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3535;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.99;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2386,264,0 chrXVI 318829 . A T 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.464;QD=24.03;ReadPosRankSum=1.670;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2724,303,0 chrXVI 319694 . A T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.41;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3540,396,0 chrXVI 320279 . T C 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=116;Dels=0.00;FS=2.857;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.054;QD=21.59;ReadPosRankSum=2.407;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2537,300,0 chrXVI 320333 . T A 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.845;QD=20.76;ReadPosRankSum=1.675;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2545,291,0 chrXVI 320355 . T A 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.081;QD=21.95;ReadPosRankSum=1.678;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2843,309,0 chrXVI 320399 . C A 2936 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.6355;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.82;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2969,333,0 chrXVI 321586 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=15.99;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2351,270,0 chrXVI 321635 . A G 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.442;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7334;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-1.151;QD=13.47;ReadPosRankSum=-0.653;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2283,261,0 chrXVI 321640 . A C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=167;Dels=0.00;FS=5.715;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.054;QD=12.94;ReadPosRankSum=2.946;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:2194,252,0 chrXVI 321733 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.33;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3684,414,0 chrXVI 321864 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.482;QD=24.11;ReadPosRankSum=1.710;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3834,435,0 chrXVI 322106 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=26.8790;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.079;QD=22.05;ReadPosRankSum=1.632;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3120,360,0 chrXVI 322300 . A T 2816 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.26;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2849,321,0 chrXVI 322307 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=146;Dels=0.00;FS=5.264;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.429;QD=17.74;ReadPosRankSum=3.350;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:2623,306,0 chrXVI 322313 . A G 2509 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=17.18;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2542,291,0 chrXVI 322652 . A G 5046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.4444;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.761;QD=23.47;ReadPosRankSum=1.635;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:5046,567,0 chrXVI 323015 . T C 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.567;QD=20.12;ReadPosRankSum=1.701;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2246,258,0 chrXVI 323018 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.88;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2279,249,0 chrXVI 323103 . A T 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=4.571;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.196;QD=22.90;ReadPosRankSum=1.699;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2460,273,0 chrXVI 323207 . A G 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.733;QD=21.92;ReadPosRankSum=1.699;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2335,273,0 chrXVI 323469 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.00;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3297,395,0 chrXVI 323715 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.57;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3710,426,0 chrXVI 323719 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.38;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3591,408,0 chrXVI 323872 . G C 2330 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=22.19;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2363,270,0 chrXVI 323900 . C G 2093 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.93;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2126,240,0 chrXVI 323982 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=19.39;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1507,165,0 chrXVI 324018 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=54.4763;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=0.67;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:9:76,9,0 chrXVI 324025 . T G 1078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.889;HaplotypeScore=53.0602;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;MQRankSum=-1.732;QD=15.18;ReadPosRankSum=1.683;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1111,126,0 chrXVI 324148 . T C 2238 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=23.31;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2271,267,0 chrXVI 324160 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=90.8518;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=23.83;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1844,201,0 chrXVI 324228 . A T 862 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=20.52;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:895,102,0 chrXVI 324252 . G A 1529 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=21.84;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1562,171,0 chrXVI 324298 . A T 2370 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.79;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2403,261,0 chrXVI 324348 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=12.75;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1117,123,0 chrXVI 324389 . A G 889 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=12.01;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:922,105,0 chrXVI 324393 . G C 911 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=11.53;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:944,108,0 chrXVI 324400 . A G 934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=6.232;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=-1.567;QD=11.12;ReadPosRankSum=1.691;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:967,111,0 chrXVI 324408 . T A 980 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=11.01;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1013,114,0 chrXVI 324433 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=14.11;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1458,168,0 chrXVI 324468 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.75;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1838,204,0 chrXVI 324519 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.10;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1504,177,0 chrXVI 324534 . A G 1241 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=15.71;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1274,153,0 chrXVI 324535 . T C 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-1.083;QD=16.41;ReadPosRankSum=1.646;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1346,153,0 chrXVI 325197 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2856,312,0 chrXVI 325353 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.93;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3348,375,0 chrXVI 325464 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3212,354,0 chrXVI 325596 . T G 3647.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.71;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3647,429,0 chrXVI 325797 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=152;Dels=0.00;FS=3.001;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.745;QD=21.01;ReadPosRankSum=2.417;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3226,366,0 chrXVI 325815 . A G 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=150;Dels=0.00;FS=6.094;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.466;QD=18.76;ReadPosRankSum=2.939;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:2847,339,0 chrXVI 325850 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=157;Dels=0.00;FS=6.079;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.201;QD=19.34;ReadPosRankSum=2.955;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:3,152:157:99:3070,351,0 chrXVI 326109 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.2750;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.56;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2755,306,0 chrXVI 326160 . T C 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=121;Dels=0.00;FS=11.299;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-0.437;QD=17.53;ReadPosRankSum=2.874;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2154,246,0 chrXVI 326171 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-1.046;QD=19.13;ReadPosRankSum=1.701;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2156,246,0 chrXVI 326203 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.80;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2330,258,0 chrXVI 326294 . G T 1078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=81.2865;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=1.123;QD=11.85;ReadPosRankSum=0.514;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1111,135,0 chrXVI 326300 . C T 62.51 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=91.8952;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=0.64;SB=-6.545e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:12:95,12,0 chrXVI 326346 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=17.33;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1957,219,0 chrXVI 326349 . T A 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=110;Dels=0.00;FS=2.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=0.123;QD=18.34;ReadPosRankSum=2.338;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2050,225,0 chrXVI 326457 . T G 1548 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.21;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1581,183,0 chrXVI 326546 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.65;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2090,246,0 chrXVI 326955 . T G 3916.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.76;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3916,444,0 chrXVI 327019 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.940;QD=21.18;ReadPosRankSum=2.381;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3791,435,0 chrXVI 327045 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.728;QD=21.35;ReadPosRankSum=1.691;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3629,405,0 chrXVI 327254 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.49;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2946,321,0 chrXVI 327302 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.589;QD=20.27;ReadPosRankSum=1.675;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2486,294,0 chrXVI 327318 . A G 2212 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.75;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2245,258,0 chrXVI 327765 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.02;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2197,246,0 chrXVI 327803 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.97;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2362,267,0 chrXVI 327827 . T C 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.039;QD=19.90;ReadPosRankSum=1.614;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1784,207,0 chrXVI 327848 . T C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=2.837;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.702;QD=19.15;ReadPosRankSum=2.344;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1814,210,0 chrXVI 327863 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.55;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1721,195,0 chrXVI 327885 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=18.24;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1875,204,0 chrXVI 328317 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.3855;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3743,411,0 chrXVI 328382 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.8487;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3596,417,0 chrXVI 328491 . G T 3188 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.34;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3221,357,0 chrXVI 328786 . T C 1991 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.61;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2024,240,0 chrXVI 329027 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=21.95;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1328,153,0 chrXVI 329164 . A G 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;MQRankSum=1.245;QD=23.00;ReadPosRankSum=1.678;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1505,171,0 chrXVI 329314 . G T 1570 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.43;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1603,180,0 chrXVI 329373 . A G 1792 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.68;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1825,204,0 chrXVI 329462 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.81;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1993,222,0 chrXVI 329486 . T C 2099 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.32;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2132,243,0 chrXVI 329529 . C T 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.347;QD=23.66;ReadPosRankSum=0.289;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2588,267,0 chrXVI 329572 . T G 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.100;QD=20.80;ReadPosRankSum=1.672;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2425,291,0 chrXVI 329584 . C G 2504 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.40;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2537,285,0 chrXVI 329617 . G A 2700 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.5806;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.60;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2733,300,0 chrXVI 329941 . A G 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=192;Dels=0.00;FS=5.832;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.311;QD=22.60;ReadPosRankSum=2.963;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:4339,489,0 chrXVI 330238 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.254;QD=20.40;ReadPosRankSum=1.686;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3134,366,0 chrXVI 330571 . C T 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.420;QD=23.76;ReadPosRankSum=-1.338;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3169,335,0 chrXVI 331090 . T C 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=193;Dels=0.00;FS=9.065;HaplotypeScore=10.2447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.241;QD=21.25;ReadPosRankSum=3.323;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:4,188:193:99:4101,468,0 chrXVI 331617 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.40;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2603,300,0 chrXVI 331831 . T C 986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=4.372;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.400;QD=18.96;ReadPosRankSum=1.666;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1019,114,0 chrXVI 331845 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=18.78;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1066,117,0 chrXVI 331853 . A G 1053 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=16.71;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1086,129,0 chrXVI 331899 . T A 905 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=14.60;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:938,105,0 chrXVI 331909 . A G 925 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=15.68;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:958,111,0 chrXVI 331974 . C T 800 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.05;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:833,93,0 chrXVI 331976 . G T 799 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=18.58;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:832,93,0 chrXVI 332031 . T C 1105 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=15.35;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1138,129,0 chrXVI 332036 . C T 1200 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=16.00;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1233,135,0 chrXVI 332063 . T A 1405 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=17.56;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1438,156,0 chrXVI 332238 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.14;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2486,276,0 chrXVI 332286 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.40;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3393,384,0 chrXVI 332562 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.41;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3488,387,0 chrXVI 332646 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.97;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3882,441,0 chrXVI 332780 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.01;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3093,351,0 chrXVI 332811 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=4.742;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.314;QD=18.74;ReadPosRankSum=1.709;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2825,333,0 chrXVI 332822 . A G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.289;QD=18.63;ReadPosRankSum=1.708;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2735,312,0 chrXVI 332928 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.62;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2564,285,0 chrXVI 333006 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.87;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2854,315,0 chrXVI 333067 . G C 2414 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.81;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2447,279,0 chrXVI 333103 . T C 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=133;Dels=0.00;FS=2.588;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.477;QD=20.69;ReadPosRankSum=2.947;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2785,321,0 chrXVI 333144 . A T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.34;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4132,471,0 chrXVI 333887 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.2923;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.21;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4270,486,0 chrXVI 334077 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=177;Dels=0.00;FS=5.433;HaplotypeScore=11.4839;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.460;QD=21.15;ReadPosRankSum=2.960;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3744,426,0 chrXVI 334143 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=162;Dels=0.00;FS=2.511;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.522;QD=20.89;ReadPosRankSum=2.957;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3384,384,0 chrXVI 334207 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.381;QD=22.88;ReadPosRankSum=1.707;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3191,363,0 chrXVI 334494 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.6603;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.31;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2491,291,0 chrXVI 334546 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=155;Dels=0.00;FS=5.928;HaplotypeScore=11.0740;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.065;QD=21.29;ReadPosRankSum=2.928;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3300,375,0 chrXVI 334619 . T C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.537;DP=126;Dels=0.00;FS=12.115;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.037;QD=21.01;ReadPosRankSum=3.749;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:5,121:126:99:2680,312,0 chrXVI 334746 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=178;Dels=0.00;FS=6.093;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-2.396;QD=21.75;ReadPosRankSum=2.915;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3872,447,0 chrXVI 334806 . C A 2761 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.30;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2794,318,0 chrXVI 335001 . T C 4517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.203;QD=21.93;ReadPosRankSum=1.681;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4517,516,0 chrXVI 335020 . C T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.67;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4594,510,0 chrXVI 335267 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.54;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3166,345,0 chrXVI 335400 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.88;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4134,468,0 chrXVI 335412 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.9152;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=1.012;QD=20.10;ReadPosRankSum=1.715;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4061,468,0 chrXVI 335468 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.950;QD=20.31;ReadPosRankSum=2.353;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4143,483,0 chrXVI 335498 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.515;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.486;QD=22.81;ReadPosRankSum=1.665;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3559,408,0 chrXVI 335609 . C G 4299.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.07;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4299,489,0 chrXVI 335909 . T C 5231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=235;Dels=0.00;FS=2.573;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.038;QD=22.26;ReadPosRankSum=2.970;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:5231,620,0 chrXVI 336445 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=20.28;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3447,372,0 chrXVI 336466 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=17.82;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2885,318,0 chrXVI 336493 . A C 1880 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=7.679;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;MQRankSum=-2.128;QD=14.46;ReadPosRankSum=2.393;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:1913,216,0 chrXVI 336494 . T C 1825 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=14.37;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1858,210,0 chrXVI 336495 . T C 1869 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=2.910;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;MQRankSum=-2.168;QD=14.27;ReadPosRankSum=2.375;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:1902,216,0 chrXVI 336514 . T C 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=159;Dels=0.00;FS=6.015;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;MQRankSum=-2.234;QD=12.95;ReadPosRankSum=2.551;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:2092,240,0 chrXVI 336526 . C A 2323 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=13.91;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2356,261,0 chrXVI 336784 . T A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.76;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4085,447,0 chrXVI 336865 . T A 2930 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.49;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2963,333,0 chrXVI 336879 . C G 2600 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.03;FS=0.000;HaplotypeScore=7.0987;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.57;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2633,300,0 chrXVI 337160 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.49;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2777,309,0 chrXVI 337250 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.63;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1374,153,0 chrXVI 337348 . C G 1778 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.67;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1811,207,0 chrXVI 337419 . A T 810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=43;Dels=0.00;FS=5.267;HaplotypeScore=6.9772;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.021;QD=18.84;ReadPosRankSum=3.240;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:4,39:43:93:843,93,0 chrXVI 337437 . C T 585 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.87;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:618,69,0 chrXVI 337499 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.29;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1930,213,0 chrXVI 337613 . T C 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.055;QD=23.39;ReadPosRankSum=2.946;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3050,354,0 chrXVI 337667 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.28;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4297,477,0 chrXVI 337841 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.93;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4667,519,0 chrXVI 338183 . G C 2353 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2386,276,0 chrXVI 338262 . G T 1847 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.52;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1880,204,0 chrXVI 338490 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.53;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2880,318,0 chrXVI 338543 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2407,264,0 chrXVI 338622 . G T 2130 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.29;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2163,237,0 chrXVI 338640 . A T 2800 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.40;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2833,306,0 chrXVI 338828 . T C 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=95;Dels=0.00;FS=5.786;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.882;QD=20.45;ReadPosRankSum=2.925;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:3,91:95:99:1976,225,0 chrXVI 338931 . T C 2004 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=18.73;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2037,234,0 chrXVI 338936 . T G 1745 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.81;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1778,213,0 chrXVI 338953 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=18.14;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1720,195,0 chrXVI 339078 . T A 1548 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=17.39;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1581,174,0 chrXVI 339098 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=18.16;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1486,162,0 chrXVI 339110 . A G 1423 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=18.72;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1456,165,0 chrXVI 339114 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=19.27;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1382,156,0 chrXVI 339477 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=17.29;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1347,150,0 chrXVI 339486 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=16.00;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1297,150,0 chrXVI 339516 . T A 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-1.646;QD=17.29;ReadPosRankSum=2.836;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1416,156,0 chrXVI 339687 . G C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.35;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3576,405,0 chrXVI 339729 . C G 2945 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.63;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2978,357,0 chrXVI 339833 . A C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.03;FS=0.000;HaplotypeScore=39.5490;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=19.41;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3280,372,0 chrXVI 340194 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.9829;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.85;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3794,438,0 chrXVI 340409 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.629;QD=21.54;ReadPosRankSum=1.706;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2941,339,0 chrXVI 340525 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.3305;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.57;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3815,435,0 chrXVI 340795 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.847;DP=180;Dels=0.00;FS=3.310;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.732;QD=21.60;ReadPosRankSum=1.674;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3888,417,0 chrXVI 340828 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.843;QD=18.45;ReadPosRankSum=-0.684;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2856,326,0 chrXVI 340831 . G T 3192 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.59;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3225,354,0 chrXVI 341086 . G T 1602 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9922;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.81;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1635,180,0 chrXVI 341182 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.33;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2436,273,0 chrXVI 341206 . C T 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.224;QD=22.51;ReadPosRankSum=1.255;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2487,273,0 chrXVI 341278 . T C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.434;QD=22.16;ReadPosRankSum=1.624;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2891,333,0 chrXVI 341332 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=3.711;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.566;QD=22.77;ReadPosRankSum=1.695;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4280,489,0 chrXVI 341647 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.76;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4621,516,0 chrXVI 341700 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.37;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3816,432,0 chrXVI 341710 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=17.97;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3558,405,0 chrXVI 341712 . C A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=18.00;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3581,393,0 chrXVI 341735 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=192;Dels=0.00;FS=2.699;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.275;QD=16.04;ReadPosRankSum=2.373;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3112,354,0 chrXVI 342157 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=161;Dels=0.00;FS=6.915;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.085;QD=22.11;ReadPosRankSum=2.357;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3559,399,0 chrXVI 342372 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.979;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=2.293;QD=21.42;ReadPosRankSum=0.340;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3053,312,0 chrXVI 342505 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2558;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.34;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2331,255,0 chrXVI 342514 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.184;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.577;QD=20.68;ReadPosRankSum=1.698;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2163,246,0 chrXVI 342600 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.312;QD=22.78;ReadPosRankSum=1.707;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3200,363,0 chrXVI 342688 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.78;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2881,327,0 chrXVI 342823 . C T 3997.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.08;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3997,450,0 chrXVI 342944 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.07;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3487,393,0 chrXVI 343066 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.41;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3217,363,0 chrXVI 343255 . A T 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=4.535;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.568;QD=22.70;ReadPosRankSum=1.704;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2870,321,0 chrXVI 343683 . T C 2494 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.14;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2527,285,0 chrXVI 343690 . T C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.587;QD=20.27;ReadPosRankSum=1.704;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2547,291,0 chrXVI 343936 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.17;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2450,279,0 chrXVI 344324 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=112;Dels=0.02;FS=3.345;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.155;QD=19.31;ReadPosRankSum=1.604;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2196,246,0 chrXVI 344345 . A G 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.085;QD=19.02;ReadPosRankSum=1.647;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2373,273,0 chrXVI 344469 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.88;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2789,303,0 chrXVI 344470 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.15;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2846,312,0 chrXVI 344509 . C A 2286 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=18.89;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2319,255,0 chrXVI 344589 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.86;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2273,252,0 chrXVI 344777 . T C 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.035;QD=21.85;ReadPosRankSum=0.554;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2218,249,0 chrXVI 344783 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.27;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2149,240,0 chrXVI 344804 . T A 2221 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=23.14;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2254,249,0 chrXVI 344873 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.17;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1875,207,0 chrXVI 344884 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.00;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1913,216,0 chrXVI 344917 . T C 2085 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.67;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2118,243,0 chrXVI 344976 . T C 2988 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.4539;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.47;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3021,348,0 chrXVI 345040 . T A 2287 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.10;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2320,264,0 chrXVI 345055 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.95;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1649,180,0 chrXVI 345087 . A T 1100 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=15.71;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1133,126,0 chrXVI 345096 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=15.35;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1169,129,0 chrXVI 345110 . T G 1183 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=15.17;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1216,141,0 chrXVI 346505 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.02;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2315,270,0 chrXVI 346506 . C A 2424 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.37;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2457,267,0 chrXVI 347009 . A G 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.351;QD=22.19;ReadPosRankSum=2.838;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2652,306,0 chrXVI 347399 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.88;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1902,219,0 chrXVI 347435 . T C 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.876;DP=90;Dels=0.00;FS=3.931;HaplotypeScore=4.5249;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-0.175;QD=17.87;ReadPosRankSum=0.720;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1641,198,0 chrXVI 347437 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=15.8293;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=18.80;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1744,201,0 chrXVI 347451 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.58;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1687,189,0 chrXVI 347463 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.53;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1498,165,0 chrXVI 347716 . A G 1396 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=16.82;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1429,165,0 chrXVI 347719 . T A 1337 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=17.36;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1370,156,0 chrXVI 347724 . A G 1161 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=15.90;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1194,135,0 chrXVI 347757 . C G 730 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=15.53;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:763,87,0 chrXVI 347759 . C T 735 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=15.64;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:768,87,0 chrXVI 347790 . A C 929 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;MQRankSum=-1.453;QD=14.98;ReadPosRankSum=1.676;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:962,105,0 chrXVI 347798 . G T 888 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;QD=13.25;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:921,99,0 chrXVI 347799 . G T 827 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=12.16;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:860,99,0 chrXVI 347814 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=13.83;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1319,150,0 chrXVI 347838 . A G 2115 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.79;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2148,246,0 chrXVI 347963 . G A 1057 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;QD=13.55;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1090,117,0 chrXVI 347969 . G A 693 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=9.12;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:84:726,84,0 chrXVI 347973 . A G 746 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=26.048;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;MQRankSum=-1.075;QD=10.66;ReadPosRankSum=2.380;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:2,68:70:90:779,90,0 chrXVI 347977 . T G 565 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=9.42;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:72:598,72,0 chrXVI 347979 . C A 521 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=9.30;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:63:554,63,0 chrXVI 347980 . A C 527 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=9.25;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:66:560,66,0 chrXVI 347997 . A C 1098 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=13.56;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1131,132,0 chrXVI 348034 . T C 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-1.089;QD=18.65;ReadPosRankSum=1.696;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1842,216,0 chrXVI 348056 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.82;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2431,279,0 chrXVI 348151 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-1.475;QD=22.96;ReadPosRankSum=1.709;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3421,384,0 chrXVI 348254 . T G 2538 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0200;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.86;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2571,291,0 chrXVI 348373 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=174;Dels=0.00;FS=6.068;HaplotypeScore=10.4708;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;MQRankSum=-1.237;QD=21.40;ReadPosRankSum=2.960;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3723,429,0 chrXVI 348431 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=36.3365;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=20.98;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2824,324,0 chrXVI 348505 . A T 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=168;Dels=0.00;FS=7.274;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.499;QD=21.65;ReadPosRankSum=2.420;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3638,411,0 chrXVI 348547 . T C 2914 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.1417;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.44;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2947,351,0 chrXVI 348646 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.61;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3695,440,0 chrXVI 348697 . G A 4797.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.7804;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.40;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4797,522,0 chrXVI 348739 . G A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.57;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4018,441,0 chrXVI 348815 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=4.098;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.686;QD=21.35;ReadPosRankSum=1.662;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3214,381,0 chrXVI 349538 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.72;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3771,417,0 chrXVI 349570 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.74;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3679,402,0 chrXVI 349717 . G C 2653 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.22;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2686,309,0 chrXVI 349901 . A T 885 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:918,99,0 chrXVI 349953 . A G 725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.311;QD=20.14;ReadPosRankSum=2.314;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:2,34:36:87:758,87,0 chrXVI 350090 . T A 314 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.70;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:39:347,39,0 chrXVI 350221 . G A 3692.01 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=25.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3692,429,0 chrXVI 350251 . T A 4047.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;MQRankSum=-1.371;QD=24.83;ReadPosRankSum=1.647;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4047,456,0 chrXVI 350341 . T C 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=9.8086;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.201;QD=22.93;ReadPosRankSum=1.714;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4357,501,0 chrXVI 350422 . A G 5247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=287;Dels=0.00;FS=3.025;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=-0.851;QD=18.28;ReadPosRankSum=2.381;SB=-3.540e+03 GT:AD:DP:GQ:PL 1/1:2,285:287:99:5247,600,0 chrXVI 350434 . A G 4431.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=16.17;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:4431,527,0 chrXVI 350446 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=16.94;SB=-3.363e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:4490,489,0 chrXVI 350455 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=16.70;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:4241,459,0 chrXVI 350476 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=15.67;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:3746,411,0 chrXVI 350533 . C T 4563.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.3928;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.50;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4563,513,0 chrXVI 350654 . C G 4091.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5364;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=21.53;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4091,465,0 chrXVI 350773 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.15;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3750,446,0 chrXVI 350968 . C T 5131.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.70;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5131,570,0 chrXVI 351571 . C T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.6777;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.45;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4877,537,0 chrXVI 351646 . G A 6095.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.90;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,251:255:99:6095,672,0 chrXVI 351841 . G A 6745.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=17.0785;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.56;SB=-3.541e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6745,738,0 chrXVI 351946 . T C 5850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=273;Dels=0.00;FS=7.252;HaplotypeScore=34.5055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.725;QD=21.43;ReadPosRankSum=2.431;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:2,267:273:99:5850,666,0 chrXVI 352228 . A C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.044;QD=20.37;ReadPosRankSum=1.683;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2926,339,0 chrXVI 352381 . G C 1806 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.42;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1839,225,0 chrXVI 352383 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=21.41;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2003,219,0 chrXVI 352479 . C T 1583 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.20;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1616,177,0 chrXVI 352487 . A T 1751 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.46;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1784,195,0 chrXVI 352575 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=25.0481;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.46;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2379,261,0 chrXVI 352604 . T G 2102 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.10;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2135,240,0 chrXVI 352618 . C G 1770 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.33;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1803,204,0 chrXVI 352804 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.42;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2454,282,0 chrXVI 352962 . A G 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=112;Dels=0.00;FS=3.842;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.938;QD=18.07;ReadPosRankSum=1.669;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,108:112:99:2057,246,0 chrXVI 352974 . T C 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8882;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.923;QD=18.66;ReadPosRankSum=1.700;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2030,231,0 chrXVI 353305 . G C 3200 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.51;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3233,366,0 chrXVI 353318 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.93;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3083,339,0 chrXVI 353391 . G C 3572.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.47;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3572,411,0 chrXVI 353535 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.435;QD=21.14;ReadPosRankSum=1.707;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2993,345,0 chrXVI 353601 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2064;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.62;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2519,288,0 chrXVI 353638 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2238,249,0 chrXVI 353679 . T C 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.144;QD=22.53;ReadPosRankSum=1.701;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2556,294,0 chrXVI 353863 . A T 2512 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.47;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2545,279,0 chrXVI 353939 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.66;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2163,237,0 chrXVI 354171 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.45;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2637,288,0 chrXVI 354174 . T C 2460 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.96;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2493,282,0 chrXVI 354222 . A T 3007 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.65;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3040,336,0 chrXVI 354279 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=172;Dels=0.00;FS=9.821;HaplotypeScore=10.1449;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.135;QD=20.43;ReadPosRankSum=2.924;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3514,399,0 chrXVI 354402 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=25.28;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3868,426,0 chrXVI 354478 . C G 3751.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.68;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3751,429,0 chrXVI 354498 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=172;Dels=0.00;FS=3.007;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.221;QD=20.26;ReadPosRankSum=2.364;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3485,396,0 chrXVI 354525 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.89;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3384,384,0 chrXVI 354697 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0077;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.65;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3508,399,0 chrXVI 354840 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3275,372,0 chrXVI 355341 . A T 5579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=3.686;HaplotypeScore=20.5842;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.848;QD=22.96;ReadPosRankSum=1.704;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5579,618,0 chrXVI 355469 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.4196;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.32;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4308,477,0 chrXVI 355495 . T A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.01;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4358,477,0 chrXVI 355544 . C A 5173.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.2497;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.89;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5173,567,0 chrXVI 355782 . A G 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.488;QD=21.47;ReadPosRankSum=1.698;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,102:106:99:2309,261,0 chrXVI 356043 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.69;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2444,276,0 chrXVI 356245 . T G 2589 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.32;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2622,303,0 chrXVI 356407 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=154;Dels=0.00;FS=2.789;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.120;QD=22.29;ReadPosRankSum=2.321;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3433,408,0 chrXVI 356553 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.72;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4033,444,0 chrXVI 356680 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.35;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2584,285,0 chrXVI 356776 . T C 2108 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.67;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2141,240,0 chrXVI 356805 . G A 2485 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.80;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2518,276,0 chrXVI 356993 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.32;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2806,309,0 chrXVI 357034 . A G 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.711;DP=133;Dels=0.00;FS=9.873;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.321;QD=20.71;ReadPosRankSum=2.946;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:3,126:133:99:2787,330,0 chrXVI 357136 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.6505;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.92;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2815,336,0 chrXVI 357296 . T C 2736 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.59;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2769,318,0 chrXVI 357327 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.84;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2799,312,0 chrXVI 357487 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.8889;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.89;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4372,486,0 chrXVI 357813 . A G 1808 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1841,207,0 chrXVI 357853 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1908,216,0 chrXVI 357960 . T C 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=101;Dels=0.00;FS=2.605;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.090;QD=22.49;ReadPosRankSum=2.851;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2304,267,0 chrXVI 358021 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2056,234,0 chrXVI 358537 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=3.648;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.748;QD=20.47;ReadPosRankSum=1.656;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3767,432,0 chrXVI 358849 . C A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8059;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.84;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3429,378,0 chrXVI 358961 . C G 2953 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.6413;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.69;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2986,345,0 chrXVI 359094 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.85;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2919,318,0 chrXVI 359175 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.39;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3529,393,0 chrXVI 359182 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.10;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3756,423,0 chrXVI 359439 . A G 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;MQRankSum=-1.431;QD=18.90;ReadPosRankSum=2.936;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2112,237,0 chrXVI 359457 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=0.26;SB=-1.398e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:6:51,6,0 chrXVI 359458 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=0.30;SB=-1.348e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:6:53,6,0 chrXVI 359468 . C A 1259 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=15.17;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1292,147,0 chrXVI 359574 . T A 672 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=17.68;SB=-4.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:78:705,78,0 chrXVI 359596 . G A 542 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=18.07;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:63:575,63,0 chrXVI 359608 . A C 401 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=18.23;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:54:434,54,0 chrXVI 359680 . G T 347 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=16.52;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:42:380,42,0 chrXVI 359694 . C T 658 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=20.56;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:78:691,78,0 chrXVI 359890 . T A 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=99.9330;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=1.028;QD=24.15;ReadPosRankSum=1.678;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3124,354,0 chrXVI 359938 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=21.84;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2632,297,0 chrXVI 359939 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=21.75;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2600,294,0 chrXVI 359989 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=150;Dels=0.01;FS=6.290;HaplotypeScore=18.1082;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.756;QD=19.38;ReadPosRankSum=2.400;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:2940,351,0 chrXVI 360040 . T C 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=3.635;HaplotypeScore=13.7966;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.018;QD=21.95;ReadPosRankSum=1.714;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4280,486,0 chrXVI 360123 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=16.21;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2529,279,0 chrXVI 360124 . A C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=4.094;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;MQRankSum=-0.517;QD=15.50;ReadPosRankSum=1.687;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2420,279,0 chrXVI 360138 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=13.36;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2144,243,0 chrXVI 360139 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=13.37;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2185,243,0 chrXVI 360170 . A G 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=168;Dels=0.00;FS=10.962;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;MQRankSum=-1.725;QD=11.35;ReadPosRankSum=2.946;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:1940,231,0 chrXVI 360191 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=14.01;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2232,246,0 chrXVI 360263 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.95;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3688,402,0 chrXVI 360315 . G C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.1201;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.99;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,152:157:99:3295,372,0 chrXVI 360607 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.97;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4132,477,0 chrXVI 360643 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=202;Dels=0.00;FS=2.915;HaplotypeScore=15.5573;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.531;QD=21.73;ReadPosRankSum=2.376;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4389,498,0 chrXVI 360727 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.134;DP=156;Dels=0.00;FS=8.183;HaplotypeScore=17.4724;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.678;QD=22.05;ReadPosRankSum=3.403;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:4,152:156:99:3440,393,0 chrXVI 360769 . T G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.94;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3357,393,0 chrXVI 361001 . G A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.37;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3847,441,0 chrXVI 361153 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.4552;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.90;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3991,438,0 chrXVI 361213 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=181;Dels=0.00;FS=6.341;HaplotypeScore=16.4273;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.849;QD=21.41;ReadPosRankSum=2.340;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3876,447,0 chrXVI 361590 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.20;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2653,300,0 chrXVI 361807 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=18.20;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1525,171,0 chrXVI 361818 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=17.26;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1535,174,0 chrXVI 361824 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=15.60;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1421,159,0 chrXVI 361836 . C G 1197 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=13.60;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1230,144,0 chrXVI 361856 . A G 1592 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.5058;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=14.74;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1625,186,0 chrXVI 362022 . T A 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.739;QD=23.49;ReadPosRankSum=1.686;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3547,414,0 chrXVI 362178 . T C 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.242;QD=23.61;ReadPosRankSum=-0.725;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4438,487,0 chrXVI 362269 . G C 3749.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.00;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3749,426,0 chrXVI 362462 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=166;Dels=0.00;FS=5.452;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=21.37;ReadPosRankSum=2.909;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3547,411,0 chrXVI 362546 . T C 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.244;DP=196;Dels=0.00;FS=9.097;HaplotypeScore=15.9688;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.111;QD=22.13;ReadPosRankSum=3.388;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:4,190:196:99:4337,515,0 chrXVI 363047 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.16;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3137,342,0 chrXVI 363066 . T G 2874 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.28;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2907,330,0 chrXVI 363135 . A T 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.316;QD=22.37;ReadPosRankSum=1.707;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3098,345,0 chrXVI 363218 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=124;Dels=0.00;FS=2.919;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.830;QD=20.95;ReadPosRankSum=2.410;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2631,312,0 chrXVI 363492 . C A 2585 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2618,291,0 chrXVI 363580 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2868,315,0 chrXVI 363977 . A G 2716 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2749,309,0 chrXVI 364060 . T G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.198;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.662;QD=22.68;ReadPosRankSum=1.197;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3448,375,0 chrXVI 364093 . C G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3272,390,0 chrXVI 364156 . T G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=3.485;HaplotypeScore=6.9422;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.269;QD=22.83;ReadPosRankSum=1.702;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2727,309,0 chrXVI 364396 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.80;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3745,411,0 chrXVI 364729 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3570,411,0 chrXVI 364843 . T A 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=211;Dels=0.00;FS=9.139;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.948;QD=20.78;ReadPosRankSum=2.380;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4384,489,0 chrXVI 364999 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.70;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3816,429,0 chrXVI 365350 . C T 5399.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.43;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5399,597,0 chrXVI 365764 . C G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.06;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3287,384,0 chrXVI 365920 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.11;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2858,342,0 chrXVI 365924 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=156;Dels=0.00;FS=9.657;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.455;QD=17.74;ReadPosRankSum=2.418;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:2800,330,0 chrXVI 366058 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.75;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3263,375,0 chrXVI 366346 . T C 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=3.056;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.586;QD=22.05;ReadPosRankSum=1.586;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2128,246,0 chrXVI 366380 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.44;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2404,264,0 chrXVI 366595 . A C 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=4.918;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.192;QD=24.18;ReadPosRankSum=1.713;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4377,504,0 chrXVI 366758 . G A 4741.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.45;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4741,540,0 chrXVI 366909 . G T 3569.01 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.63;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3569,390,0 chrXVI 366915 . G C 3172 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.82;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3205,369,0 chrXVI 366916 . G A 3380.01 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.99;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3380,375,0 chrXVI 367091 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=22.74;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2489,276,0 chrXVI 367109 . T C 2019 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=19.41;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2052,240,0 chrXVI 367110 . C T 2093 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=19.93;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2126,240,0 chrXVI 367289 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.34;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2810,318,0 chrXVI 367511 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.8056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3426,387,0 chrXVI 367655 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=3.401;HaplotypeScore=8.7852;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.195;QD=19.41;ReadPosRankSum=1.686;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2984,339,0 chrXVI 367806 . C G 4328.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.78;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4328,498,0 chrXVI 368095 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3257,369,0 chrXVI 368135 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.47;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3352,366,0 chrXVI 368629 . A T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3291,360,0 chrXVI 368905 . T C 3066 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.00;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3099,348,0 chrXVI 369001 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3332,369,0 chrXVI 369476 . A G 2838 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.8657;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.18;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2871,327,0 chrXVI 369570 . C G 2755 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=16.2184;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.36;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2788,315,0 chrXVI 369589 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.28;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2862,315,0 chrXVI 369643 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.41;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2969,324,0 chrXVI 369748 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.32;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2644,297,0 chrXVI 370280 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4333,498,0 chrXVI 370453 . T C 4997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=230;Dels=0.00;FS=8.060;HaplotypeScore=15.0574;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.209;QD=21.73;ReadPosRankSum=3.400;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:4,226:230:99:4997,573,0 chrXVI 370812 . T C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=4.173;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.709;QD=15.05;ReadPosRankSum=1.686;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2290,270,0 chrXVI 370897 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.24;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3078,339,0 chrXVI 370998 . T C 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=121;Dels=0.00;FS=5.453;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.857;QD=20.88;ReadPosRankSum=2.942;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:3,117:121:99:2559,294,0 chrXVI 371406 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.0193;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.93;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3852,438,0 chrXVI 371706 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=208;Dels=0.00;FS=8.660;HaplotypeScore=14.0972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.738;QD=21.91;ReadPosRankSum=3.418;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:4,203:208:99:4558,522,0 chrXVI 371914 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.0470;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.50;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4322,477,0 chrXVI 372742 . C T 5994.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.57;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5994,651,0 chrXVI 373029 . C T 968 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.36;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1001,108,0 chrXVI 373291 . A G 2097 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.07;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2130,260,0 chrXVI 373351 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.105;QD=23.13;ReadPosRankSum=1.678;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2971,342,0 chrXVI 373419 . T G 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=151;Dels=0.00;FS=7.261;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.276;QD=18.91;ReadPosRankSum=2.399;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,145:151:99:2888,339,0 chrXVI 373422 . T A 2784 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.89;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2817,318,0 chrXVI 373522 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.5249;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.364;QD=22.97;ReadPosRankSum=1.710;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3629,411,0 chrXVI 373847 . A G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=110;Dels=0.00;FS=2.733;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.190;QD=21.12;ReadPosRankSum=2.383;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2356,273,0 chrXVI 373891 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2287,249,0 chrXVI 373946 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=1;QD=20.92;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2627,291,0 chrXVI 374261 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3999,438,0 chrXVI 374470 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.86;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3452,387,0 chrXVI 374857 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=170;Dels=0.00;FS=2.709;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.632;QD=23.81;ReadPosRankSum=2.391;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4047,459,0 chrXVI 376113 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4122,453,0 chrXVI 376226 . A G 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=3.620;HaplotypeScore=12.0816;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.898;QD=23.77;ReadPosRankSum=1.678;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4587,522,0 chrXVI 376312 . G A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.9608;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.70;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4536,513,0 chrXVI 377062 . T A 1970 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2003,225,0 chrXVI 377336 . C T 1105 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=19;QD=17.54;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1138,126,0 chrXVI 377384 . G A 130.13 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.92;MQ0=50;QD=2.28;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:14,43:57:18:163,18,0 chrXVI 377648 . C T 1951 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=14;QD=21.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1984,222,0 chrXVI 377765 . C T 2410 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.7197;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=101;MQRankSum=1.582;QD=10.76;ReadPosRankSum=0.861;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:49,174:224:99:2443,255,0 chrXVI 378101 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.40;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2301,264,0 chrXVI 378249 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.09;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2365,258,0 chrXVI 378541 . C T 5105.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.8308;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.27;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5105,570,0 chrXVI 378635 . G C 3822.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.00;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3822,452,0 chrXVI 378670 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.9750;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.49;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4138,462,0 chrXVI 378721 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.70;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4470,495,0 chrXVI 378769 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.59;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4200,465,0 chrXVI 378833 . G T 2907 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.86;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2940,333,0 chrXVI 378865 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=18.37;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1833,213,0 chrXVI 378909 . C T 56.97 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=0.90;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,63:63:9:89,9,0 chrXVI 379018 . C T 1022 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.93;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1055,123,0 chrXVI 379885 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4066,447,0 chrXVI 379935 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.1820;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.82;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4145,462,0 chrXVI 379971 . T C 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=204;Dels=0.00;FS=3.186;HaplotypeScore=15.7760;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.698;QD=20.74;ReadPosRankSum=1.715;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4230,483,0 chrXVI 380115 . C A 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.7359;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.107;QD=23.07;ReadPosRankSum=-0.750;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4475,495,0 chrXVI 380250 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=190;Dels=0.00;FS=3.002;HaplotypeScore=14.1766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.019;QD=21.06;ReadPosRankSum=2.411;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4001,456,0 chrXVI 380368 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4215,480,0 chrXVI 380443 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.96;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4085,468,0 chrXVI 380674 . G C 2694 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.08;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2727,309,0 chrXVI 380758 . G A 4263.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.42;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4263,471,0 chrXVI 380806 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=2.927;HaplotypeScore=11.5941;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.197;QD=20.07;ReadPosRankSum=2.402;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4134,477,0 chrXVI 380850 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.6990;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.95;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3901,426,0 chrXVI 380878 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.069;QD=21.41;ReadPosRankSum=0.725;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3469,392,0 chrXVI 381121 . T C 2906 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.70;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,123:128:99:2939,330,0 chrXVI 381280 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.16;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1377,150,0 chrXVI 381362 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=62;Dels=0.00;FS=3.082;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.304;QD=21.31;ReadPosRankSum=2.369;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:99:1354,153,0 chrXVI 381840 . G A 508 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=12.8972;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=14.51;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:541,60,0 chrXVI 381920 . C T 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.168;DP=66;Dels=0.00;FS=12.208;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.430;QD=16.70;ReadPosRankSum=1.627;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:2,64:66:91:1135,91,0 chrXVI 381922 . A C 1237 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.67;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1270,138,0 chrXVI 381960 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=17.89;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1733,195,0 chrXVI 382120 . A C 2750 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.32;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2783,333,0 chrXVI 382203 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.01;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3092,339,0 chrXVI 382213 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=140;Dels=0.00;FS=3.034;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.571;QD=20.66;ReadPosRankSum=2.415;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2925,333,0 chrXVI 382287 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.80;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2911,330,0 chrXVI 382450 . A G 4975.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.51;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4975,599,0 chrXVI 382832 . C A 5433.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.8154;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.93;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5433,597,0 chrXVI 383083 . T C 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=191;Dels=0.00;FS=3.199;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.534;QD=22.82;ReadPosRankSum=1.695;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4359,501,0 chrXVI 383310 . A C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=135;Dels=0.00;FS=2.579;HaplotypeScore=11.0535;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.090;QD=15.87;ReadPosRankSum=2.375;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,130:135:99:2176,252,0 chrXVI 383361 . T C 2434 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=17.02;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2467,285,0 chrXVI 383387 . T G 2729 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.63;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2762,318,0 chrXVI 383599 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.76;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3873,444,0 chrXVI 383919 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.93;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3290,366,0 chrXVI 383928 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.01;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3367,366,0 chrXVI 384099 . T C 3183 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.6149;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.26;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3216,372,0 chrXVI 384423 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3385,372,0 chrXVI 384591 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1377,159,0 chrXVI 384718 . A T 502 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=16.73;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:535,63,0 chrXVI 384760 . G C 1095 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.66;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:53:99:1128,132,0 chrXVI 384769 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.83;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1302,153,0 chrXVI 384887 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.57;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1568,180,0 chrXVI 384917 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.35;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1570,177,0 chrXVI 385830 . T C 6040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=279;Dels=0.00;FS=6.131;HaplotypeScore=18.1574;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.431;QD=21.65;ReadPosRankSum=2.414;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:2,275:279:99:6040,696,0 chrXVI 385957 . A G 6811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=287;Dels=0.00;FS=4.095;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.687;QD=23.73;ReadPosRankSum=1.696;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:1,284:287:99:6811,777,0 chrXVI 386168 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=18.60;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3906,470,0 chrXVI 386485 . T C 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=97;Dels=0.00;FS=13.780;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.316;QD=20.65;ReadPosRankSum=2.927;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:3,93:97:99:2036,231,0 chrXVI 386538 . A G 1439 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=15.99;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1472,171,0 chrXVI 386557 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=77.5860;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=13.14;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1334,147,0 chrXVI 386574 . T A 1565 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.9783;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=14.36;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1598,177,0 chrXVI 386604 . A C 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=3.046;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.128;QD=15.24;ReadPosRankSum=2.403;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1648,192,0 chrXVI 386805 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.29;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3038,342,0 chrXVI 386960 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=20.41;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3176,345,0 chrXVI 386966 . T G 2880 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=19.20;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2913,333,0 chrXVI 387009 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=17.07;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2833,309,0 chrXVI 387014 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.2080;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=16.14;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2713,300,0 chrXVI 387162 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3255;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.37;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4017,453,0 chrXVI 387173 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=19.35;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3753,441,0 chrXVI 387194 . G T 3105 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=17.95;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3138,342,0 chrXVI 387492 . T G 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=178;Dels=0.00;FS=7.149;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.298;QD=19.90;ReadPosRankSum=2.394;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3542,405,0 chrXVI 387550 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.87;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3945,450,0 chrXVI 387568 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.41;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4122,453,0 chrXVI 387644 . C A 4477.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4477,501,0 chrXVI 388058 . A T 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-1.623;QD=21.34;ReadPosRankSum=1.710;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3393,372,0 chrXVI 388066 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.854;QD=20.21;ReadPosRankSum=1.709;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3065,348,0 chrXVI 388241 . T A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.0555;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.79;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3578,408,0 chrXVI 388417 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.171;QD=23.59;ReadPosRankSum=1.708;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3374,387,0 chrXVI 388527 . A C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=3.020;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.071;QD=24.17;ReadPosRankSum=2.355;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3770,432,0 chrXVI 388558 . A G 3102 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.00;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3135,357,0 chrXVI 388678 . G A 4584.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4584,513,0 chrXVI 388922 . A T 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=147;Dels=0.00;FS=2.894;HaplotypeScore=13.8999;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.477;QD=21.74;ReadPosRankSum=2.399;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3229,357,0 chrXVI 389144 . A T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.97;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3499,387,0 chrXVI 389187 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.37;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3810,420,0 chrXVI 389519 . T C 4931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=245;Dels=0.00;FS=3.421;HaplotypeScore=19.3604;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.675;QD=20.13;ReadPosRankSum=1.718;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:4931,581,0 chrXVI 389644 . T A 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=4.077;HaplotypeScore=10.1377;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.377;QD=20.29;ReadPosRankSum=1.715;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4099,453,0 chrXVI 389708 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.55;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4309,477,0 chrXVI 389788 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.20;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3944,438,0 chrXVI 389818 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=15.99;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2335,258,0 chrXVI 389821 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=15.17;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2218,255,0 chrXVI 389885 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=212;Dels=0.00;FS=3.543;HaplotypeScore=14.9077;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.332;QD=16.47;ReadPosRankSum=1.715;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,207:212:99:3492,399,0 chrXVI 389951 . T C 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=225;Dels=0.00;FS=2.925;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.191;QD=22.75;ReadPosRankSum=2.384;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5119,585,0 chrXVI 390128 . C T 4496.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.51;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4496,507,0 chrXVI 390636 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.88;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3259,360,0 chrXVI 391035 . G T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.3088;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.78;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3709,411,0 chrXVI 391107 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.91;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4376,489,0 chrXVI 391426 . A T 5206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=215;Dels=0.00;FS=13.095;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.525;QD=24.21;ReadPosRankSum=2.415;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:5206,579,0 chrXVI 391539 . C G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.3697;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.09;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3493,422,0 chrXVI 391587 . G A 4918.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.2003;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.48;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,223:229:99:4918,540,0 chrXVI 391648 . G A 5834.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.79;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5834,654,0 chrXVI 391804 . G C 3833.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.0014;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.61;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3833,432,0 chrXVI 391827 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.2291;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.47;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4230,459,0 chrXVI 392179 . A G 4647.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.8018;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.78;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4647,537,0 chrXVI 392213 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=17.1366;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.406;QD=21.95;ReadPosRankSum=1.681;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4433,510,0 chrXVI 392272 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4481,516,0 chrXVI 392406 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.2208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4194,500,0 chrXVI 392460 . G A 5254.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.04;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5254,582,0 chrXVI 392874 . A G 6365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=282;Dels=0.00;FS=9.409;HaplotypeScore=12.4435;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.961;QD=22.57;ReadPosRankSum=2.975;SB=-3.323e+03 GT:AD:DP:GQ:PL 1/1:3,278:282:99:6365,723,0 chrXVI 392970 . T C 5139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.694;DP=230;Dels=0.00;FS=16.969;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.208;QD=22.34;ReadPosRankSum=3.756;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:6,222:230:99:5139,582,0 chrXVI 393285 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.095;DP=195;Dels=0.00;FS=3.031;HaplotypeScore=15.1962;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.146;QD=20.41;ReadPosRankSum=2.323;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3979,470,0 chrXVI 393751 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.43;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2052,234,0 chrXVI 393808 . T A 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-0.704;QD=21.85;ReadPosRankSum=1.694;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2021,222,0 chrXVI 394211 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.38;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3340,384,0 chrXVI 394424 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.90;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2804,306,0 chrXVI 394442 . T A 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=4.187;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.262;QD=21.21;ReadPosRankSum=1.703;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2536,279,0 chrXVI 395015 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2387,264,0 chrXVI 395483 . A G 2579 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2612,294,0 chrXVI 395554 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=8.914;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.961;QD=24.27;ReadPosRankSum=2.383;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3592,405,0 chrXVI 395740 . A G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.313;QD=21.84;ReadPosRankSum=1.676;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2741,312,0 chrXVI 396203 . A G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=4.403;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.506;QD=19.66;ReadPosRankSum=1.671;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2294,279,0 chrXVI 396582 . T A 1958 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.7538;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=20.40;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1991,219,0 chrXVI 396929 . G T 2116 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5393;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.78;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2149,246,0 chrXVI 397049 . C T 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=2.368;QD=21.75;ReadPosRankSum=0.132;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2686,256,0 chrXVI 397584 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=160;Dels=0.00;FS=5.082;HaplotypeScore=4.2150;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.197;QD=20.63;ReadPosRankSum=3.404;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:3301,378,0 chrXVI 397587 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=162;Dels=0.00;FS=5.193;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.021;QD=21.03;ReadPosRankSum=0.299;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3407,375,0 chrXVI 397668 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.38;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4020,465,0 chrXVI 397759 . C G 4536.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.90;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4536,522,0 chrXVI 397779 . G A 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;DP=223;Dels=0.00;FS=3.191;HaplotypeScore=5.9398;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.400;QD=20.54;ReadPosRankSum=0.306;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4580,499,0 chrXVI 397986 . G T 4623.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.9425;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.00;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4623,507,0 chrXVI 398289 . C G 922 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=15.37;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:955,111,0 chrXVI 398362 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.97;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2142,240,0 chrXVI 398525 . G A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.59;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3639,405,0 chrXVI 398561 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3732,414,0 chrXVI 398626 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.6178;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.16;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3590,393,0 chrXVI 399434 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4692;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.34;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3371,393,0 chrXVI 399638 . T G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.26;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3535,399,0 chrXVI 400049 . G A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.02;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4084,447,0 chrXVI 400178 . A G 4897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=222;Dels=0.00;FS=9.045;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.444;QD=22.06;ReadPosRankSum=3.405;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:4,218:222:99:4897,564,0 chrXVI 400838 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7983;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.93;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2730,300,0 chrXVI 401423 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5129;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.34;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3887,423,0 chrXVI 401426 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.81;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3922,429,0 chrXVI 401616 . C G 4016.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.8782;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.71;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4016,453,0 chrXVI 402100 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.78;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2755,306,0 chrXVI 402317 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.57;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2557,279,0 chrXVI 402323 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.52;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2663,291,0 chrXVI 402848 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=4.288;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.351;QD=22.62;ReadPosRankSum=1.709;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3484,399,0 chrXVI 402965 . G C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.26;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3261,375,0 chrXVI 403028 . G A 3146 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.83;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3179,348,0 chrXVI 403061 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.63;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3372,381,0 chrXVI 403300 . G T 196.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.783;DP=142;Dels=0.00;FS=226.392;HaplotypeScore=16.1584;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=-2.326;QD=1.38;ReadPosRankSum=-7.503;SB=-6.246e-03 GT:AD:DP:GQ:PL 0/1:99,43:142:99:226,0,1403 chrXVI 403383 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.42;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3491,384,0 chrXVI 403502 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.23;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4046,456,0 chrXVI 403562 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.562;QD=22.96;ReadPosRankSum=1.640;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3513,399,0 chrXVI 403691 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.76;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3808,429,0 chrXVI 403736 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.7892;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.44;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3731,426,0 chrXVI 403919 . C A 3870.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.17;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3870,441,0 chrXVI 404106 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=170;Dels=0.00;FS=2.567;HaplotypeScore=15.1576;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.621;QD=15.88;ReadPosRankSum=2.888;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:2732,312,0 chrXVI 404554 . T C 2858 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.71;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2891,324,0 chrXVI 404596 . A G 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.136;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.304;QD=19.96;ReadPosRankSum=3.396;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:4,137:141:99:2848,324,0 chrXVI 404634 . C A 2585 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.29;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2618,288,0 chrXVI 404667 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.36;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1913,210,0 chrXVI 404753 . C T 692 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=60.2685;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=17.30;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,37:39:81:725,81,0 chrXVI 404858 . G C 734 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.47;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:90:767,90,0 chrXVI 404878 . T C 674 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.07;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:81:707,81,0 chrXVI 405195 . A T 1693 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.15;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1726,192,0 chrXVI 405423 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.415;QD=23.55;ReadPosRankSum=1.573;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3118,354,0 chrXVI 405804 . A G 5745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=240;Dels=0.00;FS=4.389;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.196;QD=23.94;ReadPosRankSum=1.703;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5745,663,0 chrXVI 406045 . T C 2969 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=16.2289;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.21;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3002,339,0 chrXVI 406076 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=17.2663;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=2.368;QD=18.02;ReadPosRankSum=0.315;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2250,273,0 chrXVI 406286 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.97;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3971,435,0 chrXVI 406317 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.96;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3247,360,0 chrXVI 406571 . A G 4584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.461;QD=23.04;ReadPosRankSum=1.662;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4584,525,0 chrXVI 406865 . T G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.02;FS=4.130;HaplotypeScore=43.5794;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.260;QD=22.83;ReadPosRankSum=1.680;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3138,360,0 chrXVI 406922 . G T 2799 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=10.4040;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.39;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2832,309,0 chrXVI 406979 . T C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=6.651;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.252;QD=19.53;ReadPosRankSum=2.369;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2416,273,0 chrXVI 407033 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=156;Dels=0.01;FS=2.713;HaplotypeScore=12.3984;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.864;QD=17.62;ReadPosRankSum=2.418;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2781,318,0 chrXVI 407036 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=10.1417;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.52;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2978,324,0 chrXVI 407571 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=170;Dels=0.00;FS=7.744;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.741;QD=23.11;ReadPosRankSum=2.363;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3929,450,0 chrXVI 407671 . T C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.077;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.260;QD=20.61;ReadPosRankSum=1.706;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2795,324,0 chrXVI 407712 . T C 2743 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.5327;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.32;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2776,330,0 chrXVI 408139 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3143,357,0 chrXVI 408347 . T A 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=3.020;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.739;QD=22.56;ReadPosRankSum=2.367;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3339,375,0 chrXVI 408750 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.19;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3307,363,0 chrXVI 408842 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.09;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3127,342,0 chrXVI 408889 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.41;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3095,336,0 chrXVI 408904 . A T 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.01;FS=4.114;HaplotypeScore=5.7528;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.119;QD=20.43;ReadPosRankSum=1.709;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3077,339,0 chrXVI 409000 . T A 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=127;Dels=0.00;FS=3.023;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.881;QD=19.24;ReadPosRankSum=2.295;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2477,285,0 chrXVI 409113 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.9713;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.768;QD=22.94;ReadPosRankSum=-0.413;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4038,436,0 chrXVI 409368 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.98;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4197,468,0 chrXVI 409553 . C T 4695.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.34;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4695,522,0 chrXVI 409812 . T C 4913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.689;DP=231;Dels=0.00;FS=22.923;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.471;QD=21.27;ReadPosRankSum=3.798;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:5,224:231:99:4913,549,0 chrXVI 409923 . C A 5308.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.0712;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.59;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5308,600,0 chrXVI 410004 . G C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3743,432,0 chrXVI 410106 . T C 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=158;Dels=0.00;FS=3.334;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.645;QD=21.75;ReadPosRankSum=1.709;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,152:158:99:3436,390,0 chrXVI 410168 . A C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.483;QD=21.11;ReadPosRankSum=1.685;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3136,366,0 chrXVI 410397 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=108;Dels=0.00;FS=8.187;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.794;QD=22.63;ReadPosRankSum=2.404;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2477,282,0 chrXVI 410541 . G T 2199 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.94;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2232,246,0 chrXVI 410559 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.94;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2098,234,0 chrXVI 410778 . A T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.78;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4375,492,0 chrXVI 410809 . T C 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.860;QD=22.70;ReadPosRankSum=2.346;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4336,492,0 chrXVI 410844 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.30;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3992,453,0 chrXVI 411012 . A G 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=204;Dels=0.00;FS=2.577;HaplotypeScore=23.5945;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.475;QD=18.34;ReadPosRankSum=2.965;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:3,198:204:99:3742,444,0 chrXVI 411174 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=165;Dels=0.00;FS=3.284;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.669;QD=21.44;ReadPosRankSum=1.648;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3537,420,0 chrXVI 411343 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.61;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3231,354,0 chrXVI 411346 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.97;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3008,333,0 chrXVI 411358 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.14;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2893,315,0 chrXVI 411579 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.38;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4291,471,0 chrXVI 412217 . A G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=127;Dels=0.00;FS=3.027;HaplotypeScore=17.3944;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.474;QD=21.24;ReadPosRankSum=2.391;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2730,309,0 chrXVI 413248 . A G 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.218;QD=22.35;ReadPosRankSum=1.711;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3732,420,0 chrXVI 413682 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.39;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2899,327,0 chrXVI 413847 . A G 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.395;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=0.147;QD=19.13;ReadPosRankSum=1.644;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2309,264,0 chrXVI 413851 . G T 2468 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.23;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2501,270,0 chrXVI 413894 . T A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.20;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3286,363,0 chrXVI 414040 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.84;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3581,390,0 chrXVI 414041 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.93;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3575,390,0 chrXVI 414288 . A G 4871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.149;QD=21.00;ReadPosRankSum=1.657;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4871,584,0 chrXVI 414410 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4026,447,0 chrXVI 414483 . A G 5282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=235;Dels=0.00;FS=3.048;HaplotypeScore=11.8900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.503;QD=22.48;ReadPosRankSum=1.702;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5282,609,0 chrXVI 414794 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3170,348,0 chrXVI 414884 . A G 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=110;Dels=0.00;FS=2.955;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.857;QD=20.06;ReadPosRankSum=2.199;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2240,249,0 chrXVI 415343 . G A 779 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.00;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:812,90,0 chrXVI 415381 . C T 991 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.54;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1024,111,0 chrXVI 415490 . T G 697 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:730,84,0 chrXVI 415608 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.56;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1995,225,0 chrXVI 415625 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.88;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2087,225,0 chrXVI 415720 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.21;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3253,354,0 chrXVI 416230 . T A 5266.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.20;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5266,582,0 chrXVI 416247 . A G 5026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.930;QD=21.85;ReadPosRankSum=1.717;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:5026,564,0 chrXVI 416425 . T A 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=155;Dels=0.00;FS=7.322;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.515;QD=20.78;ReadPosRankSum=2.370;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3254,372,0 chrXVI 416451 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.4926;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.47;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3275,387,0 chrXVI 416547 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.14;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4201,459,0 chrXVI 416905 . G A 4501.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4501,495,0 chrXVI 417099 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=4.009;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=0.925;QD=21.99;ReadPosRankSum=1.708;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3267,384,0 chrXVI 417454 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.22;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4180,459,0 chrXVI 417505 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.16;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4277,495,0 chrXVI 418090 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1682,192,0 chrXVI 418310 . A G 2247 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.41;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2280,261,0 chrXVI 418435 . C A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.90;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3298,360,0 chrXVI 418963 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=4.523;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.374;QD=20.53;ReadPosRankSum=1.687;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3194,383,0 chrXVI 418993 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.38;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3603,408,0 chrXVI 419190 . A C 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=148;Dels=0.00;FS=3.101;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.633;QD=21.64;ReadPosRankSum=1.684;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3236,375,0 chrXVI 419387 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.03;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3349,378,0 chrXVI 419431 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.01;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3911,438,0 chrXVI 419444 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.36;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3808,414,0 chrXVI 419475 . C A 2961 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.60;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2994,324,0 chrXVI 419514 . G T 2328 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.96;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2361,261,0 chrXVI 419582 . T C 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=3.001;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-0.300;QD=22.33;ReadPosRankSum=2.423;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4131,480,0 chrXVI 419654 . G A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.2535;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.45;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4127,450,0 chrXVI 419745 . A C 2573 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=17.15;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2606,306,0 chrXVI 419759 . A T 2626 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=15.82;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:2659,303,0 chrXVI 419771 . G C 2652 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=14.90;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:2685,306,0 chrXVI 419777 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=15.42;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2670,294,0 chrXVI 419793 . A C 2467 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.119;DP=177;Dels=0.00;FS=5.492;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;MQRankSum=-0.551;QD=13.94;ReadPosRankSum=2.744;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:2500,274,0 chrXVI 419798 . A T 2810 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=16.43;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2843,315,0 chrXVI 419800 . C G 2718 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;QD=15.44;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:2751,309,0 chrXVI 419927 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=24.22;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4263,471,0 chrXVI 419981 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.092;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=0.075;QD=22.57;ReadPosRankSum=1.711;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3657,423,0 chrXVI 420042 . A G 2883 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=28.0358;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.04;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2916,336,0 chrXVI 420298 . A G 3132 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.75;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3165,360,0 chrXVI 420351 . A G 3118 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3582;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.79;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3151,363,0 chrXVI 420360 . A G 2856 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.97;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2889,342,0 chrXVI 420386 . T C 2707 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.93;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2740,309,0 chrXVI 420405 . A G 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=130;Dels=0.00;FS=6.027;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.039;QD=17.67;ReadPosRankSum=2.758;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2330,267,0 chrXVI 420721 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.511;QD=22.73;ReadPosRankSum=1.647;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2829,321,0 chrXVI 420758 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.29;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2797,318,0 chrXVI 421124 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4050,459,0 chrXVI 422575 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.69;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3563,393,0 chrXVI 422582 . T G 3163 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.54;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3196,375,0 chrXVI 422588 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.110;DP=151;Dels=0.00;FS=15.472;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-2.339;QD=19.26;ReadPosRankSum=4.101;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:6,145:151:99:2941,345,0 chrXVI 422730 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=155;Dels=0.00;FS=4.094;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.135;QD=23.06;ReadPosRankSum=1.710;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3575,399,0 chrXVI 423167 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3291,381,0 chrXVI 423212 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3162,345,0 chrXVI 423302 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3572,405,0 chrXVI 423898 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.155;QD=24.50;ReadPosRankSum=1.688;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3846,432,0 chrXVI 423962 . G C 2876 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.95;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2909,342,0 chrXVI 423985 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.53;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3334,381,0 chrXVI 424087 . A C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=182;Dels=0.00;FS=2.862;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.375;QD=20.53;ReadPosRankSum=2.395;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3737,429,0 chrXVI 424091 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.81;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3683,414,0 chrXVI 424137 . G A 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.115;QD=19.23;ReadPosRankSum=0.332;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2840,293,0 chrXVI 424230 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.36;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3738,414,0 chrXVI 424350 . G T 382.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.867;DP=139;Dels=0.00;FS=224.959;HaplotypeScore=41.7291;MLEAC=1;MLEAF=0.500;MQ=55.44;MQ0=0;MQRankSum=0.540;QD=2.75;ReadPosRankSum=-5.415;SB=-1.558e+00 GT:AD:DP:GQ:PL 0/1:83,55:139:99:412,0,1126 chrXVI 424365 . A G 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.645;QD=17.14;ReadPosRankSum=2.377;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,104:108:99:1884,219,0 chrXVI 424542 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.59;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3347,396,0 chrXVI 424578 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.91;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2710,306,0 chrXVI 424841 . C G 3381.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.40;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3381,390,0 chrXVI 424851 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-1.397;QD=20.15;ReadPosRankSum=1.687;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3177,360,0 chrXVI 424858 . A G 2764 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.43;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2797,324,0 chrXVI 424943 . G C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644;DP=82;Dels=0.00;FS=80.021;HaplotypeScore=11.2342;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=0.145;QD=0.13;ReadPosRankSum=-2.547;SB=1.75 GT:AD:DP:GQ:PL 0/1:56,25:82:40:40,0,712 chrXVI 425006 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.5245;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.77;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3875,429,0 chrXVI 425302 . T C 5071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=232;Dels=0.00;FS=2.571;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.165;QD=21.86;ReadPosRankSum=2.927;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:5071,591,0 chrXVI 425377 . T A 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=223;Dels=0.00;FS=2.607;HaplotypeScore=18.1254;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.897;QD=22.83;ReadPosRankSum=2.317;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:5090,558,0 chrXVI 425437 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=20.70;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4720,522,0 chrXVI 425451 . A G 5049.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.12;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5049,576,0 chrXVI 425480 . T G 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=261;Dels=0.00;FS=4.356;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.756;QD=16.47;ReadPosRankSum=1.705;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,259:261:99:4299,498,0 chrXVI 425481 . C T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.05;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:4433,498,0 chrXVI 425740 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=148;Dels=0.00;FS=9.956;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=1.856;QD=21.54;ReadPosRankSum=2.952;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3221,366,0 chrXVI 425749 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.52;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2981,348,0 chrXVI 425940 . T C 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.821;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.398;QD=21.72;ReadPosRankSum=1.655;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2965,339,0 chrXVI 426150 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3682,411,0 chrXVI 426395 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.65;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3355,384,0 chrXVI 426505 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.86;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4033,450,0 chrXVI 427075 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.34;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3359,366,0 chrXVI 427120 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.27;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3105,345,0 chrXVI 427238 . G T 2677 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.12;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2710,297,0 chrXVI 427523 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.56;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2041,231,0 chrXVI 427600 . T C 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=69;Dels=0.00;FS=6.284;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.477;QD=19.51;ReadPosRankSum=1.681;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1379,159,0 chrXVI 427708 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.81;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1083,120,0 chrXVI 427730 . C A 926 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.70;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:959,105,0 chrXVI 427879 . T A 1269 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1575;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.83;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1302,153,0 chrXVI 428058 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=150;Dels=0.00;FS=2.737;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.500;QD=18.55;ReadPosRankSum=2.400;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2816,324,0 chrXVI 428065 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.09;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3050,336,0 chrXVI 428562 . C G 2688 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.62;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2721,318,0 chrXVI 428616 . A G 2412 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.16;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2445,288,0 chrXVI 428691 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.22;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2726,315,0 chrXVI 428845 . C G 3109 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.21;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3142,360,0 chrXVI 428863 . C G 2672 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.94;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2705,312,0 chrXVI 428880 . A G 2970 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.54;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3003,345,0 chrXVI 429173 . G A 4505.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.53;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4505,516,0 chrXVI 429236 . G C 3787.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.52;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,169:176:99:3787,438,0 chrXVI 429479 . T C 4690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=3.647;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.961;QD=21.32;ReadPosRankSum=1.685;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4690,560,0 chrXVI 429659 . G T 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.2233;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.175;QD=21.80;ReadPosRankSum=-1.369;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3172,345,0 chrXVI 429704 . A T 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.945;QD=21.55;ReadPosRankSum=1.606;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2404,264,0 chrXVI 429879 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2958,324,0 chrXVI 429951 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.26;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3396,384,0 chrXVI 430119 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3686,402,0 chrXVI 430271 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.6184;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.86;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2875,315,0 chrXVI 430481 . T A 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=179;Dels=0.01;FS=5.732;HaplotypeScore=10.1409;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.011;QD=21.69;ReadPosRankSum=2.961;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3882,438,0 chrXVI 430826 . T C 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=167;Dels=0.00;FS=12.217;HaplotypeScore=11.0263;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.392;QD=22.06;ReadPosRankSum=2.886;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3684,426,0 chrXVI 431177 . T C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.241;QD=22.49;ReadPosRankSum=2.414;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3181,369,0 chrXVI 431368 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=153;Dels=0.00;FS=3.190;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.311;QD=21.10;ReadPosRankSum=1.709;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,147:153:99:3261,372,0 chrXVI 431481 . T A 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=158;Dels=0.00;FS=3.698;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.783;QD=21.06;ReadPosRankSum=1.600;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3327,366,0 chrXVI 431492 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.58;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3248,357,0 chrXVI 431631 . A G 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.400;DP=150;Dels=0.01;FS=14.821;HaplotypeScore=120.2304;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-0.184;QD=17.37;ReadPosRankSum=4.135;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:7,140:148:99:2638,303,0 chrXVI 431680 . G T 2486 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=130.0462;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=16.36;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2519,276,0 chrXVI 431714 . T C 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.01;FS=2.596;HaplotypeScore=15.7068;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=-1.252;QD=14.47;ReadPosRankSum=2.419;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2363,279,0 chrXVI 431737 . G A 2226 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=13.33;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2259,249,0 chrXVI 431744 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=13.64;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2242,246,0 chrXVI 431837 . G T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=17.61;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4069,459,0 chrXVI 431840 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=16.84;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:3991,468,0 chrXVI 432048 . G A 4549.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.72;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4549,513,0 chrXVI 432085 . G T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=16.94;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:4421,492,0 chrXVI 432226 . C G 5007.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.55;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5007,573,0 chrXVI 432268 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.0523;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.09;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4113,483,0 chrXVI 432288 . A C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.6208;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.343;QD=20.24;ReadPosRankSum=1.694;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3703,426,0 chrXVI 432416 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.03;FS=0.000;HaplotypeScore=63.9449;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.34;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3670,414,0 chrXVI 432506 . G T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.99;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3357,375,0 chrXVI 432538 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=159;Dels=0.00;FS=11.530;HaplotypeScore=14.7574;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.994;QD=22.08;ReadPosRankSum=2.387;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3510,399,0 chrXVI 433340 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=166;Dels=0.00;FS=2.789;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.088;QD=18.73;ReadPosRankSum=2.420;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3142,369,0 chrXVI 433373 . T C 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=4.105;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.698;QD=20.85;ReadPosRankSum=1.683;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4399,521,0 chrXVI 434228 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1326,150,0 chrXVI 434269 . A T 1638 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1671,183,0 chrXVI 434418 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=9.1973;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.02;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2519,285,0 chrXVI 434613 . C T 4932.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.1102;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.18;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4932,540,0 chrXVI 434729 . A C 4326.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4326,512,0 chrXVI 435056 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.74;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3048,336,0 chrXVI 435620 . T C 3044 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.85;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3077,368,0 chrXVI 435858 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=3.836;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.133;QD=20.67;ReadPosRankSum=1.666;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2183,246,0 chrXVI 435865 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=115;Dels=0.00;FS=9.028;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.203;QD=18.00;ReadPosRankSum=2.407;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2103,249,0 chrXVI 435983 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.900;HaplotypeScore=125.2357;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-1.732;QD=18.58;ReadPosRankSum=1.706;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2541,288,0 chrXVI 435994 . T C 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-0.301;QD=18.72;ReadPosRankSum=1.556;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2616,297,0 chrXVI 436025 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=14.18;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1834,204,0 chrXVI 436032 . A G 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.085;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;MQRankSum=-1.116;QD=13.35;ReadPosRankSum=1.703;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:1622,186,0 chrXVI 436064 . G A 2596 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.23;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2629,291,0 chrXVI 436085 . G T 2571 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.36;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2604,300,0 chrXVI 436158 . T C 2851 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.63;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2884,327,0 chrXVI 436358 . T C 1550 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.67;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1583,177,0 chrXVI 436359 . T C 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.1657;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.702;QD=20.00;ReadPosRankSum=1.639;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1553,177,0 chrXVI 436422 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=14.7230;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.19;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1665,192,0 chrXVI 436465 . A C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=96;Dels=0.00;FS=3.979;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.784;QD=21.08;ReadPosRankSum=1.513;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2057,237,0 chrXVI 436525 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.70;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1865,225,0 chrXVI 436890 . T A 40.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;DP=14;Dels=0.00;FS=2.246;HaplotypeScore=21.0665;MLEAC=1;MLEAF=0.500;MQ=35.08;MQ0=0;MQRankSum=2.067;QD=2.87;ReadPosRankSum=-2.980;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:7,7:14:10:70,0,10 chrXVI 436907 . A T 43.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=4;QD=4.40;SB=-4.821e+01 GT:AD:DP:GQ:PL 1/1:4,6:10:9:76,9,0 chrXVI 443170 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=16.66;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2066,234,0 chrXVI 443225 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=23.67;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3110,339,0 chrXVI 443226 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2882;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=22.36;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2962,333,0 chrXVI 443264 . A T 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=4.553;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;MQRankSum=-0.946;QD=20.46;ReadPosRankSum=1.696;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2018,231,0 chrXVI 443279 . G T 2012 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=20.12;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2045,237,0 chrXVI 443310 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.310;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;MQRankSum=-0.181;QD=22.08;ReadPosRankSum=1.666;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2396,276,0 chrXVI 443354 . C G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=23.01;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3589,408,0 chrXVI 443462 . A T 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=114;Dels=0.00;FS=5.296;HaplotypeScore=2.8455;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;MQRankSum=-2.271;QD=20.17;ReadPosRankSum=3.134;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:4,110:114:99:2332,270,0 chrXVI 443485 . G A 1594 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=19.20;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1627,186,0 chrXVI 443499 . T C 1481 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=0;QD=16.10;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1514,174,0 chrXVI 443521 . T C 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.058;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;MQRankSum=-1.402;QD=13.54;ReadPosRankSum=1.650;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1170,144,0 chrXVI 443526 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=14.37;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1398,159,0 chrXVI 443547 . T A 1608 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=15.46;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1641,183,0 chrXVI 443612 . T G 2171 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=15.96;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2204,252,0 chrXVI 443636 . A G 1890 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=15.37;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1923,216,0 chrXVI 443638 . G C 1750 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=14.46;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1783,213,0 chrXVI 443654 . G C 1487 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=12.82;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1520,174,0 chrXVI 443661 . C A 1339 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;QD=11.35;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1372,159,0 chrXVI 443668 . A T 1381 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=11.14;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1414,165,0 chrXVI 443684 . T G 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;MQRankSum=-1.567;QD=11.90;ReadPosRankSum=1.699;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1283,153,0 chrXVI 443709 . T C 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;MQRankSum=-1.325;QD=15.28;ReadPosRankSum=1.630;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1592,195,0 chrXVI 443758 . T G 2222 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=18.07;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2255,261,0 chrXVI 443763 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=18.29;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2337,273,0 chrXVI 443833 . T C 3114 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=21.78;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3147,354,0 chrXVI 443969 . G C 3799.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.42;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3799,435,0 chrXVI 444028 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8042;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.96;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4064,453,0 chrXVI 444118 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3753;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.49;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3063,348,0 chrXVI 444202 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0556;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.979;QD=21.36;ReadPosRankSum=1.668;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3461,402,0 chrXVI 444290 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=22.89;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2574,291,0 chrXVI 444303 . T C 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=0.126;QD=20.88;ReadPosRankSum=1.701;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2372,273,0 chrXVI 444321 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.50;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2002,225,0 chrXVI 444490 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.71;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2920,321,0 chrXVI 444498 . A C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.696;QD=20.15;ReadPosRankSum=1.611;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2632,297,0 chrXVI 444506 . T G 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=3.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.219;QD=20.29;ReadPosRankSum=2.392;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2651,306,0 chrXVI 444755 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2160;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.21;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3189,348,0 chrXVI 444899 . A G 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=172;Dels=0.00;FS=4.451;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.897;QD=21.26;ReadPosRankSum=1.712;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3657,423,0 chrXVI 444920 . T A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.22;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3629,411,0 chrXVI 445378 . G T 2644 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=20.03;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2677,297,0 chrXVI 445607 . G A 1105 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1138,129,0 chrXVI 445861 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6641;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.96;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2283,267,0 chrXVI 445985 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.17;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2628,297,0 chrXVI 446142 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=157;Dels=0.00;FS=10.089;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.487;QD=22.68;ReadPosRankSum=2.942;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3560,405,0 chrXVI 446457 . T C 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=200;Dels=0.00;FS=7.374;HaplotypeScore=17.2419;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.792;QD=21.62;ReadPosRankSum=2.363;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4323,524,0 chrXVI 446756 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=3.379;HaplotypeScore=13.7453;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.443;QD=19.73;ReadPosRankSum=1.712;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3393,407,0 chrXVI 446816 . C T 5131.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.2562;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.21;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5131,570,0 chrXVI 447002 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.9425;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.90;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,227:231:99:4827,540,0 chrXVI 448559 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=218;Dels=0.00;FS=3.517;HaplotypeScore=13.6570;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.048;QD=22.31;ReadPosRankSum=1.700;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4863,558,0 chrXVI 448839 . G C 4132.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.41;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,188:193:99:4132,489,0 chrXVI 448989 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.91;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3461,387,0 chrXVI 449016 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3335;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.642;QD=22.69;ReadPosRankSum=1.642;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3495,399,0 chrXVI 449109 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.38;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2770,330,0 chrXVI 449133 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.54;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2558,279,0 chrXVI 449172 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.98;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2297,255,0 chrXVI 450060 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3328,372,0 chrXVI 450160 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.427;QD=21.52;ReadPosRankSum=1.716;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4692,557,0 chrXVI 450384 . A T 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=5.2757;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.388;QD=16.55;ReadPosRankSum=1.655;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2284,252,0 chrXVI 450386 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=16.80;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2301,264,0 chrXVI 450430 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=17.26;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1586,177,0 chrXVI 450521 . A G 1072 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.02;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1105,132,0 chrXVI 450533 . T A 1251 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.95;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1284,147,0 chrXVI 450581 . C A 1891 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.64;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1924,210,0 chrXVI 450669 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.77;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1905,210,0 chrXVI 450675 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.24;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1707,189,0 chrXVI 450699 . A T 1446 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.01;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1479,165,0 chrXVI 450731 . T A 2024 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.46;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2057,228,0 chrXVI 451005 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.8908;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.31;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3208,357,0 chrXVI 451153 . T G 2503 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.50;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2536,297,0 chrXVI 451219 . T C 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=137;Dels=0.00;FS=3.014;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.355;QD=21.06;ReadPosRankSum=2.377;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:2918,333,0 chrXVI 451247 . T C 2946 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.32;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2979,345,0 chrXVI 451317 . A G 1770 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.83;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1803,207,0 chrXVI 451383 . C G 1593 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.91;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1626,189,0 chrXVI 451459 . T C 1064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.293;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.6227;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.635;QD=14.99;ReadPosRankSum=1.683;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1097,135,0 chrXVI 451703 . G T 1786 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.01;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1819,204,0 chrXVI 451866 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;DP=150;Dels=0.00;FS=18.066;HaplotypeScore=11.0996;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.942;QD=22.45;ReadPosRankSum=3.330;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:4,146:150:99:3367,378,0 chrXVI 451895 . G C 3432.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.51;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3432,396,0 chrXVI 452126 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.38;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2968,330,0 chrXVI 452140 . A G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=148;Dels=0.00;FS=7.767;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.547;QD=17.92;ReadPosRankSum=2.416;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:2685,321,0 chrXVI 452203 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.43;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3579,411,0 chrXVI 452986 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.33;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3990,438,0 chrXVI 453010 . C T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.35;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3777,432,0 chrXVI 453106 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2738,303,0 chrXVI 453508 . C T 2839 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.27;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2872,315,0 chrXVI 453608 . G C 1307 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.51;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1340,156,0 chrXVI 453643 . G A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.036;DP=76;Dels=0.00;FS=33.682;HaplotypeScore=18.6034;MLEAC=1;MLEAF=0.500;MQ=39.59;MQ0=0;MQRankSum=-3.924;QD=0.32;ReadPosRankSum=-0.159;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:35,41:76:54:54,0,60 chrXVI 453647 . A G 438 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=15.8239;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=6.95;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:54:471,54,0 chrXVI 453659 . G A 1199 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.4934;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=12.23;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1232,138,0 chrXVI 453873 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.58;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3613,393,0 chrXVI 454184 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4479,495,0 chrXVI 454517 . A G 9246.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=421;Dels=0.00;FS=7.881;HaplotypeScore=16.2400;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.918;QD=21.96;ReadPosRankSum=2.438;SB=-4.221e+03 GT:AD:DP:GQ:PL 1/1:2,416:421:99:9246,1062,0 chrXVI 454578 . T G 6112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=17.5550;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=0.729;QD=17.72;ReadPosRankSum=1.712;SB=-3.938e+03 GT:AD:DP:GQ:PL 1/1:1,341:345:99:6112,725,0 chrXVI 454587 . C T 6269.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=19.5281;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=17.96;SB=-3.914e+03 GT:AD:DP:GQ:PL 1/1:0,346:349:99:6269,696,0 chrXVI 454982 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=4.826;HaplotypeScore=9.2138;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.936;QD=20.47;ReadPosRankSum=1.689;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3316,378,0 chrXVI 455359 . T A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.91;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3643,405,0 chrXVI 455657 . A G 724 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.66;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:757,87,0 chrXVI 455724 . T C 374 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=13.85;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:48:407,48,0 chrXVI 455725 . T A 388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;MQRankSum=-1.362;QD=13.86;ReadPosRankSum=1.486;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:48:421,48,0 chrXVI 455737 . A C 480 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=12.31;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:60:513,60,0 chrXVI 455846 . T C 900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-1.666;QD=14.29;ReadPosRankSum=2.372;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:933,108,0 chrXVI 455851 . A G 933 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=13.72;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:966,111,0 chrXVI 455955 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.13;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3122,345,0 chrXVI 456445 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.36;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2840,321,0 chrXVI 456456 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0879;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.16;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2856,315,0 chrXVI 456631 . T C 2121 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.39;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2154,240,0 chrXVI 456649 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.753;DP=104;Dels=0.00;FS=8.119;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.790;QD=19.70;ReadPosRankSum=3.723;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:5,99:104:99:2082,237,0 chrXVI 456823 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.31;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1478,168,0 chrXVI 456878 . T G 665 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.56;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:81:698,81,0 chrXVI 456975 . T A 695 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.06;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:728,84,0 chrXVI 457152 . T C 3039 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.12;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3072,345,0 chrXVI 458489 . C T 4864.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.0413;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.71;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,219:224:99:4864,552,0 chrXVI 458612 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=105.1850;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.14;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2627,303,0 chrXVI 458635 . G C 2245 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.71;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2278,261,0 chrXVI 458660 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.97;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2370,258,0 chrXVI 458912 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=3.995;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.344;QD=23.05;ReadPosRankSum=1.708;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3296,392,0 chrXVI 458958 . C A 2744 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2777,306,0 chrXVI 459330 . T G 2287 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.42;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2320,264,0 chrXVI 459333 . T C 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=102;Dels=0.00;FS=3.372;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.485;QD=20.35;ReadPosRankSum=1.663;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2109,255,0 chrXVI 459604 . A G 2028 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.3180;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.35;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2061,234,0 chrXVI 459951 . C G 4171.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.11;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4171,471,0 chrXVI 460696 . G A 330 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.71;SB=-5.300e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:42:363,42,0 chrXVI 460761 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.011;QD=23.02;ReadPosRankSum=2.407;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2657,309,0 chrXVI 460996 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=18.59;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4202,477,0 chrXVI 461013 . A T 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=219;Dels=0.00;FS=3.029;HaplotypeScore=10.5055;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.263;QD=19.13;ReadPosRankSum=2.360;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4189,465,0 chrXVI 461079 . C T 4888.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.2317;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.53;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4888,537,0 chrXVI 461198 . T C 4438.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.13;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4438,516,0 chrXVI 461367 . T C 4298.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.3069;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.23;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4298,486,0 chrXVI 462319 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.478;HaplotypeScore=8.2345;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.464;QD=20.97;ReadPosRankSum=1.705;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2738,312,0 chrXVI 462342 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.732;QD=23.29;ReadPosRankSum=1.708;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3354,381,0 chrXVI 462756 . T C 6475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.248;DP=311;Dels=0.00;FS=13.023;HaplotypeScore=16.2340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.009;QD=20.82;ReadPosRankSum=4.470;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:7,303:311:99:6475,738,0 chrXVI 462811 . A G 8425.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=427;Dels=0.00;FS=6.016;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.052;QD=19.73;ReadPosRankSum=2.941;SB=-4.985e+03 GT:AD:DP:GQ:PL 1/1:3,423:427:99:8425,972,0 chrXVI 462936 . C T 6827.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=27.9628;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.01;SB=-3.747e+03 GT:AD:DP:GQ:PL 1/1:0,323:325:99:6827,759,0 chrXVI 463615 . A G 4130.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.09;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4130,471,0 chrXVI 463657 . A T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.11;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3398,372,0 chrXVI 463659 . G T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.91;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3239,357,0 chrXVI 463723 . A C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.088;QD=16.84;ReadPosRankSum=1.710;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2694,300,0 chrXVI 464194 . A G 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.112;QD=16.69;ReadPosRankSum=1.704;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2086,240,0 chrXVI 464201 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=18.00;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2247,246,0 chrXVI 464400 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2316;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.73;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3956,444,0 chrXVI 464470 . T C 4659.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.40;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4659,528,0 chrXVI 464526 . G A 4549.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=24.0407;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.11;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4549,507,0 chrXVI 464559 . G A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.90;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4347,495,0 chrXVI 464709 . C T 6015.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=17.7268;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.03;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,270:273:99:6015,672,0 chrXVI 465383 . C G 6271.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.64;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6271,723,0 chrXVI 466824 . G C 2760 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.26;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2793,315,0 chrXVI 466923 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.83;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2156,240,0 chrXVI 467054 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=18.2071;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=16.59;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2273,255,0 chrXVI 467087 . G C 2247 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.54;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2280,264,0 chrXVI 467922 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=155;Dels=0.00;FS=6.013;HaplotypeScore=7.9256;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.669;QD=21.97;ReadPosRankSum=2.890;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3406,384,0 chrXVI 468494 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=182;Dels=0.00;FS=5.255;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.008;QD=21.07;ReadPosRankSum=3.353;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:4,177:182:99:3835,435,0 chrXVI 468512 . A C 3769.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.06;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3769,449,0 chrXVI 468648 . C G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.65;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3714,420,0 chrXVI 469629 . A G 2039 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.69;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2072,240,0 chrXVI 469667 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.08;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1935,219,0 chrXVI 469693 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.40;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2027,228,0 chrXVI 469713 . T G 1771 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.90;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1804,210,0 chrXVI 469730 . G C 1662 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=17.68;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1695,204,0 chrXVI 470217 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.333;QD=22.28;ReadPosRankSum=1.714;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4277,483,0 chrXVI 470860 . C G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.78;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3918,453,0 chrXVI 471369 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3276,390,0 chrXVI 471561 . A C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3772,429,0 chrXVI 471834 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.02;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3853,453,0 chrXVI 471891 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.1497;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.37;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3252,372,0 chrXVI 471957 . A C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=174;Dels=0.00;FS=2.573;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.238;QD=19.34;ReadPosRankSum=2.948;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:3366,390,0 chrXVI 472083 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.485;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.589;QD=22.26;ReadPosRankSum=1.684;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3262,378,0 chrXVI 472370 . T A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.37;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3856,420,0 chrXVI 472409 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.695;QD=22.88;ReadPosRankSum=1.709;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3363,381,0 chrXVI 472433 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.76;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3564,390,0 chrXVI 472490 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.28;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3238,366,0 chrXVI 472696 . A C 2444 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.96;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2477,285,0 chrXVI 472825 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.81;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1869,210,0 chrXVI 472894 . G T 1119 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1152,126,0 chrXVI 473286 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=207;Dels=0.00;FS=6.430;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.418;QD=22.13;ReadPosRankSum=2.426;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4580,534,0 chrXVI 473391 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=3.144;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.480;QD=22.32;ReadPosRankSum=1.627;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3728,429,0 chrXVI 473481 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.282;QD=22.23;ReadPosRankSum=1.687;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3468,413,0 chrXVI 473594 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3445,378,0 chrXVI 473877 . A C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=190;Dels=0.00;FS=6.045;HaplotypeScore=12.9239;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.081;QD=20.97;ReadPosRankSum=2.963;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:3,184:190:99:3985,459,0 chrXVI 474003 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.3026;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.56;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3579,423,0 chrXVI 474370 . G C 3085 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.85;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3118,354,0 chrXVI 474526 . C T 4611.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.9525;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.28;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4611,507,0 chrXVI 474750 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.81;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3134,354,0 chrXVI 475030 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.69;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2331,255,0 chrXVI 475211 . C A 3060 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.29;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3093,348,0 chrXVI 475484 . G C 3106 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=21.72;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3139,354,0 chrXVI 475496 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.8517;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.13;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3053,342,0 chrXVI 475562 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.746;DP=161;Dels=0.00;FS=12.145;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.569;QD=21.18;ReadPosRankSum=3.795;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:5,155:161:99:3410,393,0 chrXVI 475711 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.108;QD=20.36;ReadPosRankSum=1.711;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3278,390,0 chrXVI 475729 . T G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.36;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3556,405,0 chrXVI 475802 . A T 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.232;DP=139;Dels=0.00;FS=8.417;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.195;QD=20.96;ReadPosRankSum=3.370;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:2946,324,0 chrXVI 476377 . G C 3327.01 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=20.04;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3327,384,0 chrXVI 476379 . C T 3462.01 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.73;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3462,381,0 chrXVI 476380 . C T 3396.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.09;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3396,384,0 chrXVI 476646 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=7.321;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.171;QD=22.60;ReadPosRankSum=2.416;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3345,398,0 chrXVI 476694 . C G 2871 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.59;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2904,336,0 chrXVI 476826 . G A 2710 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=18.95;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2743,303,0 chrXVI 476833 . T C 2429 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=16.99;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2462,279,0 chrXVI 476836 . T C 2444 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=0.209;QD=17.33;ReadPosRankSum=1.658;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2477,291,0 chrXVI 476851 . A T 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.825;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=1.026;QD=17.71;ReadPosRankSum=1.687;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2725,303,0 chrXVI 477152 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.72;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3612,396,0 chrXVI 477202 . A T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4825;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3906,435,0 chrXVI 477361 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3207,363,0 chrXVI 477481 . C G 3289.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.6242;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.08;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3289,375,0 chrXVI 477628 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.77;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3589,402,0 chrXVI 477910 . G A 5954.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.6330;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.53;SB=-3.171e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5954,654,0 chrXVI 477983 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.3956;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.11;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4334,477,0 chrXVI 478083 . T C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.313;DP=180;Dels=0.00;FS=5.288;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.838;QD=21.82;ReadPosRankSum=-0.615;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3927,415,0 chrXVI 478120 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.26;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3508,390,0 chrXVI 478141 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.63;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3037,333,0 chrXVI 478144 . A T 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=2.936;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.074;QD=19.03;ReadPosRankSum=2.400;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2869,324,0 chrXVI 478277 . T C 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-1.249;QD=19.93;ReadPosRankSum=1.705;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2604,300,0 chrXVI 478288 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=136;Dels=0.00;FS=2.917;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.847;QD=19.21;ReadPosRankSum=2.359;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2646,306,0 chrXVI 478294 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=0.195;QD=19.18;ReadPosRankSum=1.654;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2584,297,0 chrXVI 478657 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.94;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3104,351,0 chrXVI 478714 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.96;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2968,342,0 chrXVI 479396 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.7969;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.06;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2982,339,0 chrXVI 479770 . A G 5414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=236;Dels=0.00;FS=6.909;HaplotypeScore=9.7378;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.984;QD=22.94;ReadPosRankSum=2.397;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:2,231:236:99:5414,612,0 chrXVI 479826 . C T 5904.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.8168;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.15;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5904,660,0 chrXVI 479899 . C T 7372.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.55;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:0,311:313:99:7372,805,0 chrXVI 479920 . A C 6201.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.74;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:6201,728,0 chrXVI 479932 . G T 6098.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.40;SB=-3.609e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6098,678,0 chrXVI 480004 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.784;DP=194;Dels=0.00;FS=4.843;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.775;QD=19.96;ReadPosRankSum=3.800;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:5,188:194:99:3872,447,0 chrXVI 480360 . T C 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=3.072;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.049;QD=18.93;ReadPosRankSum=1.635;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1396,162,0 chrXVI 480441 . T G 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.516;QD=21.04;ReadPosRankSum=1.658;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2032,231,0 chrXVI 480671 . G C 3190 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.58;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3223,366,0 chrXVI 480795 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.98;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3877,450,0 chrXVI 480813 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.2290;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.32;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4063,447,0 chrXVI 481072 . T G 3907.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.04;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3907,450,0 chrXVI 481542 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=122;Dels=0.00;FS=2.473;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.868;QD=23.11;ReadPosRankSum=2.860;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2852,327,0 chrXVI 481833 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.44;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4459,510,0 chrXVI 482104 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.4066;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=22.73;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3955,447,0 chrXVI 482155 . G A 5157.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.4738;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.99;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5157,561,0 chrXVI 482212 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3602;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.01;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3024,327,0 chrXVI 482429 . A G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.6045;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.935;QD=14.50;ReadPosRankSum=1.705;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:1889,222,0 chrXVI 482737 . G C 1876 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.4947;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=16.75;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1909,216,0 chrXVI 482770 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=94.7355;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=13.74;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1696,189,0 chrXVI 482968 . T G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.5968;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.14;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3867,473,0 chrXVI 483004 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.7094;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.12;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:4030,450,0 chrXVI 483116 . G A 4984.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=18.0645;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.97;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4984,552,0 chrXVI 483298 . T G 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=1.715;QD=21.10;ReadPosRankSum=2.307;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:3967,470,0 chrXVI 483319 . T A 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=199;Dels=0.00;FS=8.479;HaplotypeScore=5.6601;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.452;QD=20.94;ReadPosRankSum=3.399;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:4167,462,0 chrXVI 483355 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=204;Dels=0.00;FS=3.005;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.392;QD=16.21;ReadPosRankSum=2.364;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:2,200:204:99:3307,401,0 chrXVI 483359 . G T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.69;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3776,414,0 chrXVI 483739 . T C 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=226;Dels=0.00;FS=6.642;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.464;QD=20.95;ReadPosRankSum=2.384;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:4734,552,0 chrXVI 483904 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=237;Dels=0.00;FS=11.040;HaplotypeScore=18.6096;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.188;QD=21.93;ReadPosRankSum=3.788;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:5,232:237:99:5197,612,0 chrXVI 483961 . G C 4707.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.6055;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.40;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4707,549,0 chrXVI 484285 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.4961;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.38;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3670,399,0 chrXVI 484327 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.61;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3641,420,0 chrXVI 484357 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.31;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3792,417,0 chrXVI 484429 . T C 4906.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=19.2239;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.61;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4906,570,0 chrXVI 485045 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6285;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.99;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3959,435,0 chrXVI 485212 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.38;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4395,498,0 chrXVI 485788 . T G 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.066;QD=21.52;ReadPosRankSum=1.688;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3421,399,0 chrXVI 485801 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.16;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3404,372,0 chrXVI 485873 . T G 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.133;QD=17.56;ReadPosRankSum=1.688;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1420,162,0 chrXVI 485898 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.45;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1730,192,0 chrXVI 486011 . C A 1818 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=22.0555;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.00;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1851,207,0 chrXVI 486091 . A T 1532 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.43;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1565,177,0 chrXVI 486231 . G T 1431 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.02;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1464,162,0 chrXVI 486284 . G A 2289 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.66;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2322,258,0 chrXVI 486307 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.32;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2378,258,0 chrXVI 486334 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.45;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2328,270,0 chrXVI 486575 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=19.85;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3050,339,0 chrXVI 486595 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;MQRankSum=-1.691;QD=18.27;ReadPosRankSum=1.711;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3102,366,0 chrXVI 486612 . A G 2774 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.32;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2807,330,0 chrXVI 486629 . T A 2519 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=15.45;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2552,288,0 chrXVI 486646 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=15.12;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2361,264,0 chrXVI 486789 . T G 3200 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.86;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3233,384,0 chrXVI 486969 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.60;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3268,360,0 chrXVI 487204 . C T 1603 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=59.7683;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.43;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1636,183,0 chrXVI 487225 . T C 1182 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.91;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1215,138,0 chrXVI 487322 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1570,177,0 chrXVI 487380 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.83;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1736,198,0 chrXVI 487579 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.666;QD=22.60;ReadPosRankSum=2.337;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2993,339,0 chrXVI 487851 . A G 2349 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2382,267,0 chrXVI 488646 . G T 1373 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.79;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1406,153,0 chrXVI 488655 . A C 1202 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.72;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1235,144,0 chrXVI 489307 . T A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.43;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4082,447,0 chrXVI 489406 . G A 4867.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=18.2584;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.83;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4867,555,0 chrXVI 489538 . T C 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.985;QD=20.70;ReadPosRankSum=1.714;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:3974,447,0 chrXVI 489543 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.86;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3901,423,0 chrXVI 490135 . G A 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=4.687;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-1.279;QD=7.73;ReadPosRankSum=-1.642;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:1223,138,0 chrXVI 490235 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.94;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3577,396,0 chrXVI 490254 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.2022;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.23;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3355,375,0 chrXVI 490450 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.51;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2784,312,0 chrXVI 490554 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.22;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2699,309,0 chrXVI 490756 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3260,366,0 chrXVI 490906 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.56;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3628,414,0 chrXVI 491068 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.00;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4255,468,0 chrXVI 491113 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.31;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3858,435,0 chrXVI 491133 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.4799;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.97;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4153,456,0 chrXVI 491543 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.151;QD=21.52;ReadPosRankSum=1.662;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3261,372,0 chrXVI 491568 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.05;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3944,429,0 chrXVI 492354 . C T 4647.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.6300;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.56;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4647,513,0 chrXVI 493222 . G A 4346.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=18.90;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4346,477,0 chrXVI 493247 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=15.45;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3215,351,0 chrXVI 493261 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=0;QD=13.44;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:2667,297,0 chrXVI 493264 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=12.54;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2415,273,0 chrXVI 493278 . T C 2154 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.38;MQ0=0;QD=11.22;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2187,252,0 chrXVI 493281 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=12.17;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2346,258,0 chrXVI 493292 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=13.24;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2483,276,0 chrXVI 493304 . C G 2418 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=14.06;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2451,288,0 chrXVI 493377 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.70;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4698,528,0 chrXVI 493470 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.09;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4109,465,0 chrXVI 494188 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=173;Dels=0.00;FS=10.472;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.285;QD=22.87;ReadPosRankSum=2.936;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3956,453,0 chrXVI 494337 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4313,489,0 chrXVI 494546 . T G 3381.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.81;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3381,401,0 chrXVI 494821 . C T 3177 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.76;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3210,354,0 chrXVI 495156 . A G 3042 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.88;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3075,357,0 chrXVI 495265 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.8742;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=21.70;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3906,456,0 chrXVI 495414 . G T 3062 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.74;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3095,348,0 chrXVI 495454 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.12;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2879,327,0 chrXVI 495673 . A G 2743 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.26;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,125:129:99:2776,315,0 chrXVI 495977 . A C 4628.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.43;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4628,537,0 chrXVI 496633 . T C 4627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.0903;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.340;QD=20.84;ReadPosRankSum=1.653;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,218:222:99:4627,557,0 chrXVI 496753 . G A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.08;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4151,456,0 chrXVI 496807 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.89;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3614,414,0 chrXVI 496835 . G T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.44;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4443,483,0 chrXVI 497140 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.708;QD=23.05;ReadPosRankSum=1.101;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3319,381,0 chrXVI 497162 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.66;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3856,423,0 chrXVI 497602 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.32;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3685,411,0 chrXVI 497709 . T G 5675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=255;Dels=0.00;FS=5.219;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.276;QD=22.25;ReadPosRankSum=2.972;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:3,249:255:99:5675,657,0 chrXVI 497758 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=2.756;HaplotypeScore=12.4497;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.524;QD=22.65;ReadPosRankSum=2.317;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4621,522,0 chrXVI 497958 . C G 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=178;Dels=0.00;FS=3.916;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=2.393;QD=19.67;ReadPosRankSum=1.888;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:2,173:178:99:3501,377,0 chrXVI 497997 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.63;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3473,384,0 chrXVI 498200 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=4.213;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.302;QD=23.82;ReadPosRankSum=1.709;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3692,423,0 chrXVI 498617 . T C 6034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=278;Dels=0.00;FS=13.051;HaplotypeScore=13.1992;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.705;QD=21.71;ReadPosRankSum=2.902;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:3,273:278:99:6034,696,0 chrXVI 498689 . C T 4828.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.4150;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.46;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4828,537,0 chrXVI 498848 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=162;Dels=0.00;FS=3.680;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.785;QD=21.48;ReadPosRankSum=1.711;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3479,399,0 chrXVI 499073 . G A 5295.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.51;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5295,588,0 chrXVI 499315 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.36;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3047,339,0 chrXVI 499388 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=23.48;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3310,372,0 chrXVI 499617 . G C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=19.47;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3466,411,0 chrXVI 499635 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=18.71;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3330,363,0 chrXVI 499664 . A G 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;MQRankSum=-1.373;QD=14.70;ReadPosRankSum=1.690;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2444,276,0 chrXVI 499678 . A G 2116 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=14.01;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2149,249,0 chrXVI 499684 . G A 2007 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=0;QD=13.75;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2040,222,0 chrXVI 499687 . C G 1936 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=13.54;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:1969,231,0 chrXVI 499691 . T C 1996 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=6.283;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;MQRankSum=-2.110;QD=13.13;ReadPosRankSum=2.401;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2029,234,0 chrXVI 499731 . C A 2648 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=18.65;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2681,294,0 chrXVI 499939 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=24.64;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3212,351,0 chrXVI 500018 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2991,330,0 chrXVI 500240 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.3623;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.83;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4433,480,0 chrXVI 500339 . T G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.182;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.8150;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.322;QD=22.48;ReadPosRankSum=0.365;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3417,370,0 chrXVI 500562 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=15.54;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1603,177,0 chrXVI 500581 . G A 945 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.04;FS=0.000;HaplotypeScore=9.7973;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=8.36;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:978,108,0 chrXVI 500590 . C A 869 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3219;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=8.05;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:902,99,0 chrXVI 500615 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=13.32;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1245,141,0 chrXVI 500735 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.4028;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.69;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3340,384,0 chrXVI 500897 . G A 5907.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=19.3434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.81;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5907,663,0 chrXVI 500988 . T C 5603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=284;Dels=0.00;FS=3.119;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.230;QD=19.73;ReadPosRankSum=1.683;SB=-3.410e+03 GT:AD:DP:GQ:PL 1/1:1,282:284:99:5603,639,0 chrXVI 501008 . T C 6112.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=5.0545;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.84;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:0,308:308:99:6112,699,0 chrXVI 501086 . C G 5238.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.22;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,255:259:99:5238,597,0 chrXVI 501323 . T A 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.259;QD=24.95;ReadPosRankSum=1.711;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4167,459,0 chrXVI 501437 . C A 4271.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.96;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4271,483,0 chrXVI 501668 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4201,471,0 chrXVI 501709 . G C 4732.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.3180;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.53;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,205:210:99:4732,540,0 chrXVI 502052 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.45;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2839,309,0 chrXVI 502118 . T C 1106 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.51;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1139,129,0 chrXVI 502697 . G A 209.01 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=12.7877;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=2.30;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:27:242,27,0 chrXVI 503157 . C G 3946.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.13;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3946,473,0 chrXVI 503192 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=18.52;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2774,303,0 chrXVI 503305 . A C 2771 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.15;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2804,306,0 chrXVI 503314 . A G 2530 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.77;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2563,300,0 chrXVI 503459 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.15;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2569,282,0 chrXVI 503873 . C A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5344;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.70;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4132,459,0 chrXVI 503888 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=4.320;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.830;QD=20.51;ReadPosRankSum=1.696;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3958,462,0 chrXVI 504044 . A G 3140 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.0499;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.79;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3173,357,0 chrXVI 504597 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.77;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4196,483,0 chrXVI 505893 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.88;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4165,456,0 chrXVI 506058 . T G 5356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=3.315;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.442;QD=21.17;ReadPosRankSum=1.691;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:5356,621,0 chrXVI 506129 . T C 5768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=3.205;HaplotypeScore=16.3009;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.553;QD=22.80;ReadPosRankSum=1.691;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:1,250:253:99:5768,648,0 chrXVI 506360 . T A 4627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=3.203;HaplotypeScore=17.0083;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.929;QD=22.35;ReadPosRankSum=1.699;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4627,507,0 chrXVI 506595 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.647;QD=19.58;ReadPosRankSum=1.663;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2989,339,0 chrXVI 506604 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.36;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2801,321,0 chrXVI 507005 . A G 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=223;Dels=0.00;FS=11.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-1.539;QD=20.43;ReadPosRankSum=2.914;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:3,219:223:99:4556,528,0 chrXVI 507023 . A G 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=239;Dels=0.00;FS=3.410;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;MQRankSum=-1.138;QD=18.81;ReadPosRankSum=1.602;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:4496,522,0 chrXVI 507026 . C T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=18.63;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4453,513,0 chrXVI 507047 . A C 4880.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.14;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4880,561,0 chrXVI 507169 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.527;QD=21.36;ReadPosRankSum=1.665;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4422,510,0 chrXVI 507218 . C A 5217.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.2952;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=22.68;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5217,579,0 chrXVI 507225 . A G 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=214;Dels=0.00;FS=2.678;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=0.075;QD=21.25;ReadPosRankSum=2.392;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4548,528,0 chrXVI 507491 . T C 3129 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.51;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3162,360,0 chrXVI 507608 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.78;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2584,309,0 chrXVI 507635 . T C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.680;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.237;QD=20.86;ReadPosRankSum=1.680;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2807,321,0 chrXVI 507854 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.17;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3114,348,0 chrXVI 508199 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.1396;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.52;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3716,411,0 chrXVI 508243 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5888;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.13;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3668,417,0 chrXVI 508697 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.44;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3430,378,0 chrXVI 508709 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1613;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.71;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3292,363,0 chrXVI 508976 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.4877;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.15;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4398,489,0 chrXVI 509084 . G A 4604.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.37;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4604,504,0 chrXVI 509810 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=23.41;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3722,417,0 chrXVI 509832 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=20.66;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3575,390,0 chrXVI 509846 . A G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=6.939;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.070;QD=18.38;ReadPosRankSum=2.418;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:2900,333,0 chrXVI 510020 . A G 2816 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.71;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2849,324,0 chrXVI 510238 . A G 1888 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.75;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1921,216,0 chrXVI 510285 . G T 1801 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.16;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1834,201,0 chrXVI 510291 . A G 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=95;Dels=0.00;FS=11.325;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.323;QD=18.63;ReadPosRankSum=2.882;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:3,91:95:99:1803,207,0 chrXVI 510355 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.14;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1890,225,0 chrXVI 510403 . A G 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.580;QD=21.48;ReadPosRankSum=2.334;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1859,213,0 chrXVI 510469 . A T 1242 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.71;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1275,141,0 chrXVI 510522 . T C 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=6.084;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.828;QD=21.23;ReadPosRankSum=1.682;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1498,174,0 chrXVI 510564 . T A 1582 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.82;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1615,177,0 chrXVI 510580 . T C 1312 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.58;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1345,150,0 chrXVI 510650 . C T 768 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=41.4714;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=14.22;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:90:801,90,0 chrXVI 510652 . T C 770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=55;Dels=0.00;FS=10.875;HaplotypeScore=41.5307;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;MQRankSum=-2.057;QD=14.00;ReadPosRankSum=2.872;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:3,52:55:90:803,90,0 chrXVI 510663 . G A 100.26 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=54.5408;MLEAC=2;MLEAF=1.00;MQ=41.32;MQ0=0;QD=1.45;SB=-2.413e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:15:133,15,0 chrXVI 510713 . A T 2395 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.59;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2428,267,0 chrXVI 510773 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.27;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3141,351,0 chrXVI 510816 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=25.19;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3552,384,0 chrXVI 510985 . A G 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.904;QD=22.18;ReadPosRankSum=1.713;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,183:188:99:4169,474,0 chrXVI 511038 . C T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.71;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4150,459,0 chrXVI 511141 . G C 2968 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.01;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3001,342,0 chrXVI 511378 . C T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=23.47;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3826,435,0 chrXVI 511406 . A G 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=2.876;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-0.624;QD=21.98;ReadPosRankSum=2.412;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2934,342,0 chrXVI 511425 . T A 2575 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=22.39;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2608,288,0 chrXVI 511469 . A T 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.217;QD=22.02;ReadPosRankSum=1.689;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1795,201,0 chrXVI 511493 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.04;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2176,237,0 chrXVI 511583 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=16.82;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1412,165,0 chrXVI 511623 . T A 712 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=19.24;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:84:745,84,0 chrXVI 511625 . C T 653 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=18.66;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:78:686,78,0 chrXVI 511628 . T G 633 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=19.18;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:78:666,78,0 chrXVI 511707 . C G 585 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=15.39;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:618,72,0 chrXVI 511744 . T A 633 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;MQRankSum=0.821;QD=11.11;ReadPosRankSum=1.672;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:78:666,78,0 chrXVI 511751 . A C 689 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=12.76;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:81:722,81,0 chrXVI 511752 . A C 677 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=12.09;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:84:710,84,0 chrXVI 511769 . T A 727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;MQRankSum=-1.323;QD=12.12;ReadPosRankSum=2.883;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:81:760,81,0 chrXVI 511842 . C A 1890 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=72.4881;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.98;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1923,213,0 chrXVI 511943 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-0.058;QD=20.61;ReadPosRankSum=1.654;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1867,216,0 chrXVI 511946 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=20.85;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1868,207,0 chrXVI 512028 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.37;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2494,285,0 chrXVI 512102 . T A 948 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.17;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:981,108,0 chrXVI 512105 . C T 821 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.55;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:854,99,0 chrXVI 512148 . T C 768 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:801,99,0 chrXVI 512216 . A C 785 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.66;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:93:818,93,0 chrXVI 512517 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.9011;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.38;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2722,300,0 chrXVI 512760 . T C 2744 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.33;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2777,327,0 chrXVI 512940 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2547,279,0 chrXVI 513619 . G A 5357.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.0703;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.92;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5357,585,0 chrXVI 513853 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=188;Dels=0.00;FS=2.565;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.227;QD=19.42;ReadPosRankSum=2.919;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:3,183:188:99:3651,426,0 chrXVI 513862 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.03;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3546,422,0 chrXVI 514290 . T A 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=4.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.98;ReadPosRankSum=1.699;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2423,276,0 chrXVI 514323 . C A 2079 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2112,234,0 chrXVI 514359 . A G 1876 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1909,219,0 chrXVI 514428 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=10.205;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.141;QD=20.68;ReadPosRankSum=2.398;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2039,249,0 chrXVI 514583 . A G 2212 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2245,258,0 chrXVI 514728 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.4989;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.15;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3334,369,0 chrXVI 515057 . T C 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.487;QD=22.42;ReadPosRankSum=1.705;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2903,333,0 chrXVI 515138 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.00;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2833,341,0 chrXVI 515185 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.15;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3174,354,0 chrXVI 515189 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=18.91;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3135,342,0 chrXVI 515196 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.204;QD=17.91;ReadPosRankSum=1.646;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2916,333,0 chrXVI 515243 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=16.86;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2730,330,0 chrXVI 515535 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=3.149;HaplotypeScore=5.7707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.449;QD=23.26;ReadPosRankSum=1.710;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3698,423,0 chrXVI 516710 . T C 2500 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.93;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2533,291,0 chrXVI 516787 . A G 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=126;Dels=0.00;FS=3.045;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.264;QD=22.92;ReadPosRankSum=2.411;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2921,336,0 chrXVI 516982 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.03;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3142,348,0 chrXVI 517099 . C G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.6843;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.03;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3723,423,0 chrXVI 517281 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;DP=148;Dels=0.00;FS=9.036;HaplotypeScore=9.0436;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.035;QD=22.41;ReadPosRankSum=3.376;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3317,393,0 chrXVI 517454 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.7017;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.43;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4404,498,0 chrXVI 517746 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4538,545,0 chrXVI 517881 . G A 5919.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.59;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5919,663,0 chrXVI 518479 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=150;Dels=0.00;FS=3.779;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.311;QD=22.49;ReadPosRankSum=1.685;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3374,387,0 chrXVI 518518 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.26;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3605,408,0 chrXVI 518836 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=222;Dels=0.00;FS=5.775;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-0.475;QD=19.62;ReadPosRankSum=2.922;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:3,217:222:99:4356,498,0 chrXVI 519038 . C T 4704.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=21.0380;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4704,516,0 chrXVI 519153 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=15.39;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3049,336,0 chrXVI 519322 . A G 5873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=3.781;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.310;QD=23.59;ReadPosRankSum=1.718;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:1,245:249:99:5873,666,0 chrXVI 519355 . G A 5924.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.0578;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.38;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5924,645,0 chrXVI 519435 . T C 5500.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.54;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5500,650,0 chrXVI 519523 . C A 4842.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.24;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4842,543,0 chrXVI 519709 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.8067;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.41;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4001,453,0 chrXVI 519721 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.9889;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=0.196;QD=20.26;ReadPosRankSum=1.679;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3930,462,0 chrXVI 519727 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=3.510;HaplotypeScore=3.9693;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=-1.243;QD=19.08;ReadPosRankSum=1.676;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3549,422,0 chrXVI 519754 . G T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=19.43;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3905,435,0 chrXVI 520090 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.8134;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.328;QD=19.71;ReadPosRankSum=1.110;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4080,450,0 chrXVI 520132 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=14.49;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:3404,387,0 chrXVI 520162 . A C 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=238;Dels=0.00;FS=2.604;HaplotypeScore=13.4091;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-1.047;QD=14.77;ReadPosRankSum=2.243;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:3515,399,0 chrXVI 520194 . A T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.0998;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.59;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:3865,444,0 chrXVI 520400 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.958;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.528;QD=18.11;ReadPosRankSum=1.645;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2188,246,0 chrXVI 520404 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=17.86;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2283,249,0 chrXVI 520828 . C T 133.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=13.31;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:166,18,0 chrXVI 520832 . T C 128.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=12.81;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:161,18,0 chrXVI 521100 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=0.922;QD=2.83;ReadPosRankSum=0.198;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,5:7:6:51,6,0 chrXVI 521292 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.71;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1596,183,0 chrXVI 521328 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.87;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2659,294,0 chrXVI 521940 . T C 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=267;Dels=0.00;FS=3.013;HaplotypeScore=7.4421;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;MQRankSum=-0.832;QD=16.91;ReadPosRankSum=2.413;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:2,265:267:99:4515,525,0 chrXVI 521945 . C G 4670.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=16.74;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,276:279:99:4670,540,0 chrXVI 522033 . G A 5525.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=20.16;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5525,603,0 chrXVI 522075 . A G 1543.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.600;DP=332;Dels=0.01;FS=3.736;HaplotypeScore=340.5998;MLEAC=1;MLEAF=0.500;MQ=34.30;MQ0=0;MQRankSum=0.579;QD=4.65;ReadPosRankSum=6.705;SB=-1.138e+03 GT:AD:DP:GQ:PL 0/1:180,149:329:99:1573,0,158 chrXVI 522081 . T A 1306 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.02;FS=0.000;HaplotypeScore=263.3264;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;QD=4.13;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,262:310:99:1339,150,0 chrXVI 522090 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=76.5751;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=3.95;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:1239,138,0 chrXVI 522104 . C A 1429 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.569;DP=295;Dels=0.00;FS=9.692;HaplotypeScore=84.4216;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=0;MQRankSum=-3.402;QD=4.84;ReadPosRankSum=1.890;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:7,287:294:99:1462,165,0 chrXVI 522105 . A G 543.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.902;DP=296;Dels=0.00;FS=12.489;HaplotypeScore=67.8131;MLEAC=1;MLEAF=0.500;MQ=33.39;MQ0=0;MQRankSum=1.699;QD=1.83;ReadPosRankSum=7.082;SB=-6.200e+02 GT:AD:DP:GQ:PL 0/1:156,139:296:99:573,0,523 chrXVI 522111 . G A 416.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.132;DP=290;Dels=0.00;FS=16.886;HaplotypeScore=34.4323;MLEAC=1;MLEAF=0.500;MQ=34.87;MQ0=0;MQRankSum=-3.155;QD=1.43;ReadPosRankSum=-8.743;SB=-1.094e+03 GT:AD:DP:GQ:PL 0/1:157,132:290:99:446,0,960 chrXVI 522120 . G A 382.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.386;DP=289;Dels=0.00;FS=18.686;HaplotypeScore=7.5573;MLEAC=1;MLEAF=0.500;MQ=37.14;MQ0=0;MQRankSum=-3.966;QD=1.32;ReadPosRankSum=-11.226;SB=-8.150e+02 GT:AD:DP:GQ:PL 0/1:178,111:289:99:412,0,1175 chrXVI 522510 . G A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.8233;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.69;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4518,495,0 chrXVI 522823 . A G 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=195;Dels=0.00;FS=9.110;HaplotypeScore=13.2631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.953;QD=21.82;ReadPosRankSum=3.415;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4254,483,0 chrXVI 522960 . A G 2779 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5242;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.35;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2812,321,0 chrXVI 523110 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3355,369,0 chrXVI 523433 . C G 3185 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.38;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3218,360,0 chrXVI 523446 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.69;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2950,327,0 chrXVI 523482 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.29;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2374,279,0 chrXVI 523494 . A G 2078 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=17.61;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2111,249,0 chrXVI 523583 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3271,369,0 chrXVI 523692 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.70;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2898,348,0 chrXVI 523749 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.589;QD=21.35;ReadPosRankSum=1.665;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2232,255,0 chrXVI 523800 . A G 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;DP=85;Dels=0.00;FS=4.191;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.320;QD=20.18;ReadPosRankSum=1.237;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1748,191,0 chrXVI 524127 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1879,207,0 chrXVI 524220 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3449,378,0 chrXVI 524743 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=143;Dels=0.00;FS=7.913;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-2.136;QD=21.94;ReadPosRankSum=2.380;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3170,357,0 chrXVI 524953 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.67;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2265,249,0 chrXVI 525053 . A T 2411 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.96;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2444,273,0 chrXVI 525272 . A G 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=211;Dels=0.00;FS=6.685;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.017;QD=20.60;ReadPosRankSum=2.403;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4347,515,0 chrXVI 525308 . G T 4723.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.2998;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.04;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4723,525,0 chrXVI 525445 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9304;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.51;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3066,348,0 chrXVI 525478 . C A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.60;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3480,384,0 chrXVI 525636 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=16.88;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1924,231,0 chrXVI 525655 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.9783;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=17.95;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2079,237,0 chrXVI 525725 . T G 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.253;QD=18.90;ReadPosRankSum=1.704;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2358,282,0 chrXVI 525874 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.92;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3553,390,0 chrXVI 526176 . T C 2773 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.92;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2806,318,0 chrXVI 526237 . T C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.569;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.627;QD=20.43;ReadPosRankSum=1.702;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2403,288,0 chrXVI 526257 . T C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=118;Dels=0.00;FS=9.963;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.112;QD=16.83;ReadPosRankSum=2.768;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2019,243,0 chrXVI 526263 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2880;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.26;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2087,243,0 chrXVI 526602 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.490;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.155;QD=23.41;ReadPosRankSum=1.680;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3170,366,0 chrXVI 526851 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=174.6363;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=13.80;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:2958,330,0 chrXVI 527307 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.8051;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.61;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4085,459,0 chrXVI 527344 . C G 3073 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.7054;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.05;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,140:146:99:3106,360,0 chrXVI 527456 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.866;QD=21.57;ReadPosRankSum=1.694;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3883,444,0 chrXVI 527480 . C A 3825.01 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=21.13;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3825,429,0 chrXVI 527482 . C T 3837.01 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=21.44;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3837,423,0 chrXVI 527485 . A G 3590.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=186;Dels=0.00;FS=6.139;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=1.261;QD=19.30;ReadPosRankSum=2.344;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3590,417,0 chrXVI 527574 . T C 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.857;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.341;QD=23.32;ReadPosRankSum=2.408;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2808,324,0 chrXVI 528017 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1235;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.05;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3431,378,0 chrXVI 528301 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.15;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3722,420,0 chrXVI 528548 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.90;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4183,477,0 chrXVI 528593 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2369;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.82;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3905,459,0 chrXVI 528975 . C T 171.03 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.04;FS=0.000;HaplotypeScore=17.0218;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=1.82;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:24:204,24,0 chrXVI 529035 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.634;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=2.101;QD=23.02;ReadPosRankSum=2.383;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3407,402,0 chrXVI 529207 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.03;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3615,396,0 chrXVI 529318 . A G 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=136;Dels=0.00;FS=5.299;HaplotypeScore=8.2502;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.127;QD=20.49;ReadPosRankSum=2.918;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2820,324,0 chrXVI 529339 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.022;QD=21.65;ReadPosRankSum=1.704;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2674,303,0 chrXVI 529371 . A G 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=127;Dels=0.00;FS=8.401;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.494;QD=20.29;ReadPosRankSum=3.374;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:4,121:127:99:2610,300,0 chrXVI 529663 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.99;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2696,294,0 chrXVI 529749 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2464,279,0 chrXVI 529890 . T C 2920 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.79;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2953,351,0 chrXVI 529944 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=21.61;ReadPosRankSum=1.708;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3167,369,0 chrXVI 530286 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=178;Dels=0.00;FS=6.091;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.619;QD=22.78;ReadPosRankSum=2.960;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:4055,477,0 chrXVI 530370 . A G 4475.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.6390;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.95;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4475,513,0 chrXVI 530472 . C T 4740.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.69;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4740,525,0 chrXVI 530807 . G C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.33;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3907,441,0 chrXVI 531193 . A G 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.663;QD=22.03;ReadPosRankSum=1.658;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2126,237,0 chrXVI 531957 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3006,333,0 chrXVI 532161 . A G 2966 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2999,342,0 chrXVI 532319 . T C 2706 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.93;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2739,306,0 chrXVI 532708 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5848;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.12;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3653,420,0 chrXVI 533286 . A C 2607 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2640,300,0 chrXVI 533457 . T C 311 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.28;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:39:344,39,0 chrXVI 533561 . G A 1194 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.41;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1227,132,0 chrXVI 533565 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.07;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1157,126,0 chrXVI 533820 . T C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.140;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.223;QD=22.14;ReadPosRankSum=1.656;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3088,351,0 chrXVI 533888 . T G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.9844;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.531;QD=20.64;ReadPosRankSum=1.712;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:3612,408,0 chrXVI 534359 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.20;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3457,381,0 chrXVI 534401 . C G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.87;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3589,428,0 chrXVI 534539 . A G 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=197;Dels=0.00;FS=6.545;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.393;QD=23.82;ReadPosRankSum=2.362;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4692,534,0 chrXVI 534572 . C T 4200.01 SnpCluster AC=2;AF=1.00;AN=2;DP=228;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=18.42;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4200,474,0 chrXVI 534574 . A G 4224.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=229;Dels=0.00;FS=16.524;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-1.656;QD=18.45;ReadPosRankSum=3.392;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:4,224:229:99:4224,480,0 chrXVI 534581 . T C 4120.01 SnpCluster AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=17.99;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4120,485,0 chrXVI 534749 . G A 4422.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.45;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4422,492,0 chrXVI 535407 . T C 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-1.334;QD=19.41;ReadPosRankSum=1.701;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2226,255,0 chrXVI 535413 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.77;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2248,267,0 chrXVI 535437 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.25;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2304,249,0 chrXVI 535727 . T C 1445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=70;Dels=0.00;FS=2.898;HaplotypeScore=5.2593;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.159;QD=20.64;ReadPosRankSum=2.344;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1478,171,0 chrXVI 535979 . G T 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.5164;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.259;QD=22.17;ReadPosRankSum=1.459;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2848,315,0 chrXVI 536429 . G A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.4339;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.43;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4568,510,0 chrXVI 536708 . T C 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.874;DP=130;Dels=0.00;FS=18.559;HaplotypeScore=22.2841;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;MQRankSum=-2.623;QD=15.07;ReadPosRankSum=-0.782;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:12,117:130:99:1992,231,0 chrXVI 536741 . T G 259.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.760;DP=153;Dels=0.00;FS=0.726;HaplotypeScore=38.7025;MLEAC=1;MLEAF=0.500;MQ=53.71;MQ0=2;MQRankSum=-6.544;QD=1.69;ReadPosRankSum=-4.373;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:107,37:153:99:289,0,105 chrXVI 536744 . T A,C 282.44 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.000;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.4743;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.29;MQ0=2;MQRankSum=0.277;QD=2.09;ReadPosRankSum=-0.257;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/2:9,34,92:135:40:342,40,50,259,0,296 chrXVI 536747 . T A 144.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;DP=130;Dels=0.00;FS=0.912;HaplotypeScore=16.5459;MLEAC=1;MLEAF=0.500;MQ=54.84;MQ0=2;MQRankSum=-6.775;QD=1.11;ReadPosRankSum=-6.333;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:101,21:130:71:174,0,71 chrXVI 536802 . T C 5070.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=5.0235;MLEAC=2;MLEAF=1.00;MQ=60.96;MQ0=0;QD=18.11;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:5070,585,0 chrXVI 537057 . T C 2507 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7791;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.17;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2540,291,0 chrXVI 537122 . A G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.233;QD=19.69;ReadPosRankSum=1.621;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2514,300,0 chrXVI 537410 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.61;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3863,423,0 chrXVI 537617 . A C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.038;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.5858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.645;QD=20.72;ReadPosRankSum=2.419;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3377,384,0 chrXVI 537975 . G C 2649 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.19;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2682,306,0 chrXVI 538056 . A T 2813 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.87;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2846,309,0 chrXVI 538351 . T C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=144;Dels=0.00;FS=6.072;HaplotypeScore=10.6039;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.252;QD=17.31;ReadPosRankSum=2.909;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:2525,303,0 chrXVI 538388 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.09;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3534,393,0 chrXVI 538592 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.46;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3964,453,0 chrXVI 538649 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.88;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2824,312,0 chrXVI 538784 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.693;QD=21.24;ReadPosRankSum=1.710;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3419,413,0 chrXVI 539088 . T A 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.556;QD=25.67;ReadPosRankSum=1.688;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4030,432,0 chrXVI 539109 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.19;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3701,402,0 chrXVI 539185 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.33;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2595,294,0 chrXVI 539194 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.03;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2507,279,0 chrXVI 539197 . A G 2405 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.09;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2438,276,0 chrXVI 539336 . C A 4875.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.62;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4875,525,0 chrXVI 539499 . A G 4439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=3.145;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.608;QD=22.53;ReadPosRankSum=1.714;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4439,513,0 chrXVI 539669 . C A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.50;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3735,414,0 chrXVI 539795 . T A 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=151;Dels=0.00;FS=3.594;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.057;QD=23.62;ReadPosRankSum=1.709;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3567,390,0 chrXVI 539864 . T C 3178 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.54;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3211,375,0 chrXVI 539891 . G C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.04;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3272,372,0 chrXVI 539931 . A G 3038 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.01;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3071,363,0 chrXVI 540158 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.03;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3869,426,0 chrXVI 540311 . C G 4273.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4273,495,0 chrXVI 540419 . A G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=111;Dels=0.00;FS=5.682;HaplotypeScore=7.7294;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.446;QD=21.52;ReadPosRankSum=2.937;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2422,273,0 chrXVI 540443 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.78;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2311,252,0 chrXVI 540521 . A G 2470 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2503,288,0 chrXVI 540893 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.83;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1895,204,0 chrXVI 541043 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2474,273,0 chrXVI 541191 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3091,351,0 chrXVI 541340 . T C 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=177;Dels=0.00;FS=6.197;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.639;QD=22.79;ReadPosRankSum=2.365;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:4034,459,0 chrXVI 541747 . A C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.96;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3294,387,0 chrXVI 542024 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.0972;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.315;QD=22.45;ReadPosRankSum=1.706;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3064,348,0 chrXVI 542071 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.80;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2932,324,0 chrXVI 542081 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.50;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2985,333,0 chrXVI 542291 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.09;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3690,417,0 chrXVI 542298 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.01;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3742,429,0 chrXVI 542310 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.66;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3460,387,0 chrXVI 542874 . A G 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=137;Dels=0.00;FS=3.031;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.045;QD=20.67;ReadPosRankSum=2.396;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2865,330,0 chrXVI 542953 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=4.968;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.303;QD=21.12;ReadPosRankSum=1.701;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2419,291,0 chrXVI 543224 . C G 2526 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2559,291,0 chrXVI 543428 . C T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5370;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.01;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4073,456,0 chrXVI 543686 . A G 3193 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.43;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3226,366,0 chrXVI 543700 . C G 3184 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.90;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3217,360,0 chrXVI 543720 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-1.184;QD=19.77;ReadPosRankSum=1.688;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3156,357,0 chrXVI 543839 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.23;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3566,387,0 chrXVI 543850 . A C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.61;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3525,396,0 chrXVI 543909 . T A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=17.51;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3255,357,0 chrXVI 543911 . T A 3152 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=17.61;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3185,348,0 chrXVI 543937 . A G 3897.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.09;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3897,444,0 chrXVI 544071 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.67;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4194,483,0 chrXVI 544271 . T G 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=159;Dels=0.00;FS=6.628;HaplotypeScore=10.4469;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.622;QD=20.89;ReadPosRankSum=2.387;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3321,393,0 chrXVI 544371 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=26.6012;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.17;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3968,470,0 chrXVI 544433 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=18.54;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2629,303,0 chrXVI 544452 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=15.99;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2223,246,0 chrXVI 544471 . A G 2169 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=14.66;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2202,255,0 chrXVI 544608 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.85;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4365,480,0 chrXVI 544696 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.3765;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.63;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4109,459,0 chrXVI 544798 . A T 5847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=258;Dels=0.00;FS=3.822;HaplotypeScore=24.7757;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.551;QD=22.66;ReadPosRankSum=1.678;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:5847,657,0 chrXVI 545158 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.04;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3410,393,0 chrXVI 545320 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.11;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3891,462,0 chrXVI 545374 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=16.2340;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.74;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3911,435,0 chrXVI 545480 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=165;Dels=0.00;FS=2.843;HaplotypeScore=10.5365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.037;QD=20.77;ReadPosRankSum=2.420;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3427,390,0 chrXVI 545587 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=4.429;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.625;QD=21.03;ReadPosRankSum=1.704;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2620,297,0 chrXVI 545677 . C A 2542 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.67;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2575,294,0 chrXVI 545725 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.263;QD=23.07;ReadPosRankSum=1.704;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2940,339,0 chrXVI 545863 . A G 2683 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.36;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2716,321,0 chrXVI 546628 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3140,354,0 chrXVI 546763 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.862;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.475;QD=22.02;ReadPosRankSum=1.685;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3248,392,0 chrXVI 546814 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.23;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3828,423,0 chrXVI 547624 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.167;QD=21.38;ReadPosRankSum=1.694;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3976,450,0 chrXVI 548014 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.25;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3548,417,0 chrXVI 548476 . T C 3008 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.12;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3041,345,0 chrXVI 548919 . A G 3167 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3200,369,0 chrXVI 549254 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.69;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4107,474,0 chrXVI 549520 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.40;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3299,363,0 chrXVI 549578 . C T 3546.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.33;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3546,393,0 chrXVI 549673 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.02;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3338,375,0 chrXVI 549906 . G C 2898 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2931,339,0 chrXVI 550193 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2388,261,0 chrXVI 550441 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.19;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1628,180,0 chrXVI 550572 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.07;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1445,165,0 chrXVI 550745 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.53;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2579,288,0 chrXVI 550760 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=135;Dels=0.00;FS=5.106;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.713;QD=19.44;ReadPosRankSum=3.314;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:4,130:135:99:2657,309,0 chrXVI 550866 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.27;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3013,345,0 chrXVI 550890 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.89;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3097,345,0 chrXVI 550926 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=145;Dels=0.00;FS=5.888;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.604;QD=18.72;ReadPosRankSum=2.882;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2748,327,0 chrXVI 551115 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.57;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3097,351,0 chrXVI 551282 . T G 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=179;Dels=0.00;FS=2.569;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.158;QD=21.65;ReadPosRankSum=2.915;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3876,461,0 chrXVI 551484 . T C 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=210;Dels=0.00;FS=3.403;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.033;QD=20.59;ReadPosRankSum=1.715;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4323,504,0 chrXVI 551697 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.14;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3088,351,0 chrXVI 551920 . C G 3023 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2759;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:3056,348,0 chrXVI 552399 . C G 3106 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.9573;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.27;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3139,354,0 chrXVI 552585 . C T 4532.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0636;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4532,507,0 chrXVI 552953 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3809,450,0 chrXVI 553028 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.42;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3102,354,0 chrXVI 553046 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.49;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3127,342,0 chrXVI 553071 . T C 2740 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=16.12;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:2773,324,0 chrXVI 553081 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=15.59;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:2792,303,0 chrXVI 553246 . G C 2755 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3984;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.96;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,134:138:99:2788,315,0 chrXVI 553465 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3732,411,0 chrXVI 553603 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.84;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3974,441,0 chrXVI 554287 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=3.603;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.092;QD=19.61;ReadPosRankSum=1.695;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3687,440,0 chrXVI 554363 . C A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5069;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.20;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3643,399,0 chrXVI 554422 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3619,417,0 chrXVI 554526 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.97;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3439,402,0 chrXVI 554550 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.03;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3984,435,0 chrXVI 554599 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.59;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4425,539,0 chrXVI 554689 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=17.3301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4535,522,0 chrXVI 554769 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.84;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4365,474,0 chrXVI 555046 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.562;QD=22.63;ReadPosRankSum=1.711;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3688,411,0 chrXVI 555186 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=10.4248;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.14;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3388,384,0 chrXVI 555444 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.61;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2383,282,0 chrXVI 555465 . C G 2257 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.90;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2290,261,0 chrXVI 555876 . G C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=4.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrXVI 555945 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=7.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrXVI 556406 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.025;QD=21.12;ReadPosRankSum=1.632;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2948,342,0 chrXVI 556430 . G T 3060 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.36;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3093,336,0 chrXVI 556511 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.03;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3556,390,0 chrXVI 556778 . C A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.65;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4546,513,0 chrXVI 557006 . G A 4900.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.9892;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.37;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4900,564,0 chrXVI 557977 . C A 1062 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.42;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1095,126,0 chrXVI 558242 . T A 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.7635;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.233;QD=21.83;ReadPosRankSum=1.670;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2456,279,0 chrXVI 559956 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.43;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1619,180,0 chrXVI 560017 . A T 1588 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.46;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1621,177,0 chrXVI 560045 . G T 1324 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.89;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1357,156,0 chrXVI 560053 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.54;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1450,162,0 chrXVI 560087 . A G 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;DP=67;Dels=0.00;FS=5.578;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-1.137;QD=19.22;ReadPosRankSum=2.895;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1321,156,0 chrXVI 560123 . T C 1124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=0.642;QD=20.81;ReadPosRankSum=1.668;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1157,135,0 chrXVI 560144 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=22.49;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1495,162,0 chrXVI 560312 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=22.55;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1228,141,0 chrXVI 560326 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=19.86;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1205,144,0 chrXVI 560332 . A G 1232 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;MQRankSum=-1.137;QD=19.25;ReadPosRankSum=1.678;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1265,150,0 chrXVI 560337 . T C 1328 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=6.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;MQRankSum=-0.595;QD=19.82;ReadPosRankSum=1.577;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1361,165,0 chrXVI 560342 . G T 1207 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=18.01;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1240,147,0 chrXVI 560353 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=18.17;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1559,177,0 chrXVI 560589 . G T 37.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.8266;MLEAC=1;MLEAF=0.500;MQ=14.59;MQ0=32;MQRankSum=-0.715;QD=0.86;ReadPosRankSum=0.382;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:37,3:43:13:67,0,13 chrXVI 560606 . G T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DP=53;Dels=0.00;FS=23.096;HaplotypeScore=11.7814;MLEAC=1;MLEAF=0.500;MQ=14.91;MQ0=25;MQRankSum=0.087;QD=0.57;ReadPosRankSum=-1.746;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:40,5:53:60:60,0,84 chrXVI 560618 . A G 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DP=61;Dels=0.00;FS=13.031;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=13.50;MQ0=23;MQRankSum=3.221;QD=0.97;ReadPosRankSum=0.689;SB=0.781 GT:AD:DP:GQ:PL 0/1:55,5:61:37:89,0,37 chrXVI 560623 . G T 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;DP=61;Dels=0.00;FS=12.991;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=13.10;MQ0=22;MQRankSum=2.920;QD=1.07;ReadPosRankSum=-0.189;SB=0.780 GT:AD:DP:GQ:PL 0/1:56,5:61:32:95,0,32 chrXVI 560626 . A G 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;DP=65;Dels=0.00;FS=12.723;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=13.18;MQ0=20;MQRankSum=3.328;QD=0.97;ReadPosRankSum=-1.331;SB=0.781 GT:AD:DP:GQ:PL 0/1:59,5:65:36:93,0,36 chrXVI 560633 . A G 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.259;DP=67;Dels=0.00;FS=12.677;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=12.40;MQ0=16;MQRankSum=3.622;QD=1.08;ReadPosRankSum=-2.684;SB=3.28 GT:AD:DP:GQ:PL 1/1:61,5:67:12:105,12,0 chrXVI 560700 . T G 199.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.029;DP=68;Dels=0.00;FS=42.299;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=14.55;MQ0=7;MQRankSum=4.783;QD=2.93;ReadPosRankSum=-1.120;SB=-2.126e+00 GT:AD:DP:GQ:PL 1/1:54,14:68:5:230,5,0 chrXVI 560712 . T G 232 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.290;DP=58;Dels=0.00;FS=7.782;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=15.03;MQ0=10;MQRankSum=1.448;QD=4.00;ReadPosRankSum=-1.738;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:6,16:58:30:265,30,0 chrXVI 560758 . A G 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;DP=48;Dels=0.00;FS=28.917;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=23.65;MQ0=17;MQRankSum=0.190;QD=3.04;ReadPosRankSum=-0.613;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,14:48:99:176,0,186 chrXVI 560764 . C T 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.538;DP=50;Dels=0.00;FS=34.631;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=24.58;MQ0=15;MQRankSum=-0.639;QD=4.70;ReadPosRankSum=2.027;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:14,30:50:99:265,0,102 chrXVI 560767 . C T 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;DP=52;Dels=0.00;FS=32.041;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.64;MQ0=14;MQRankSum=-0.019;QD=1.44;ReadPosRankSum=-1.222;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,11:52:99:105,0,267 chrXVI 560793 . C A 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.647;DP=57;Dels=0.00;FS=84.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=10;MQRankSum=-2.703;QD=1.49;ReadPosRankSum=-4.430;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,39:57:99:115,0,145 chrXVI 560795 . A T 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;DP=57;Dels=0.00;FS=84.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=10;MQRankSum=-3.298;QD=1.51;ReadPosRankSum=-4.430;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,39:57:99:116,0,148 chrXVI 560796 . C T 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;DP=55;Dels=0.00;FS=84.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.83;MQ0=8;MQRankSum=-3.326;QD=1.65;ReadPosRankSum=-4.430;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,39:55:99:121,0,140 chrXVI 560798 . T C 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.817;DP=55;Dels=0.00;FS=84.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.83;MQ0=8;MQRankSum=-4.288;QD=1.45;ReadPosRankSum=-4.430;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,39:55:99:110,0,149 chrXVI 560799 . T C 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;DP=55;Dels=0.00;FS=84.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.83;MQ0=8;MQRankSum=-2.788;QD=1.45;ReadPosRankSum=-4.430;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,39:55:99:110,0,146 chrXVI 560927 . T C 461.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DP=125;Dels=0.00;FS=26.057;HaplotypeScore=5.7055;MLEAC=1;MLEAF=0.500;MQ=36.96;MQ0=3;MQRankSum=-8.580;QD=3.69;ReadPosRankSum=0.889;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,44:125:99:491,0,1377 chrXVI 560944 . C A 1103.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.836;DP=119;Dels=0.00;FS=27.296;HaplotypeScore=3.3493;MLEAC=1;MLEAF=0.500;MQ=35.69;MQ0=3;MQRankSum=7.985;QD=9.27;ReadPosRankSum=-5.202;SB=-3.370e+02 GT:AD:DP:GQ:PL 0/1:46,73:119:99:1133,0,575 chrXVI 560966 . A T 1045.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.730;DP=113;Dels=0.00;FS=48.166;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=36.05;MQ0=3;MQRankSum=6.827;QD=9.25;ReadPosRankSum=-1.648;SB=-4.850e+02 GT:AD:DP:GQ:PL 0/1:48,65:113:99:1075,0,604 chrXVI 561045 . A T 1267 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.80;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1300,147,0 chrXVI 561052 . T C 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.630;QD=18.14;ReadPosRankSum=1.680;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1230,144,0 chrXVI 561198 . A G 1981 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.58;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2014,228,0 chrXVI 561225 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.71;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1577,174,0 chrXVI 561239 . A T 1431 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.04;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1464,168,0 chrXVI 561360 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.97;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2670,294,0 chrXVI 561391 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.27;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1817,198,0 chrXVI 561434 . T A 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.400;QD=21.63;ReadPosRankSum=1.572;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1439,159,0 chrXVI 561816 . C A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3662,405,0 chrXVI 561951 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.52;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3487,396,0 chrXVI 562779 . A G 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=119;Dels=0.00;FS=6.589;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.548;QD=21.67;ReadPosRankSum=2.408;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2612,303,0 chrXVI 562839 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=150;Dels=0.00;FS=5.256;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.159;QD=22.19;ReadPosRankSum=3.353;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:4,145:150:99:3329,384,0 chrXVI 563274 . A G 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=245;Dels=0.00;FS=5.223;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.249;QD=21.98;ReadPosRankSum=1.704;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,242:245:99:5384,609,0 chrXVI 563280 . A G 4662.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.84;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4662,557,0 chrXVI 563468 . A C 4655.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.15;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4655,540,0 chrXVI 563864 . C A 1531 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.69;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1564,174,0 chrXVI 564521 . A C 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=216;Dels=0.00;FS=2.849;HaplotypeScore=19.5667;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.704;QD=21.06;ReadPosRankSum=2.404;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4550,522,0 chrXVI 564703 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6198;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.206;QD=19.51;ReadPosRankSum=1.302;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2882,345,0 chrXVI 564724 . T C 2662 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.23;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2695,312,0 chrXVI 564815 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.31;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3525,402,0 chrXVI 565119 . T A 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.16;ReadPosRankSum=1.692;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1939,222,0 chrXVI 565170 . C T 2938 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2971,330,0 chrXVI 565246 . A T 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=5.217;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.422;QD=25.24;ReadPosRankSum=1.648;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3137,348,0 chrXVI 565328 . C T 4634.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.32;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4634,510,0 chrXVI 565500 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.82;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3687,446,0 chrXVI 565561 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5598;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.507;QD=22.55;ReadPosRankSum=2.409;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2761,321,0 chrXVI 565601 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.71;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1965,216,0 chrXVI 565603 . T A 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.366;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.993;QD=20.81;ReadPosRankSum=1.693;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1885,210,0 chrXVI 565677 . C A 1257 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=12.32;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1290,144,0 chrXVI 565687 . G T 738 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=10.54;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:90:771,90,0 chrXVI 565689 . A T 585 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=69;Dels=0.00;FS=9.824;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;MQRankSum=-2.633;QD=8.48;ReadPosRankSum=2.898;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:81:618,81,0 chrXVI 565690 . A T 538 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=8.15;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:78:571,78,0 chrXVI 565783 . T A 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.479;QD=20.66;ReadPosRankSum=1.695;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1975,216,0 chrXVI 566078 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=3.411;HaplotypeScore=6.6743;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.679;QD=21.55;ReadPosRankSum=1.698;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4396,507,0 chrXVI 566123 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.92;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3808,417,0 chrXVI 566170 . A T 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.742;QD=20.67;ReadPosRankSum=1.650;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3472,384,0 chrXVI 566571 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=149;Dels=0.00;FS=3.006;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.192;QD=22.36;ReadPosRankSum=2.416;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3331,378,0 chrXVI 566724 . A G 2928 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2961,342,0 chrXVI 567069 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.21;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2600,285,0 chrXVI 567139 . T G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.398;QD=20.72;ReadPosRankSum=1.394;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3646,420,0 chrXVI 567154 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.34;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4066,465,0 chrXVI 567464 . G A 5243.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.4734;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.83;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5243,573,0 chrXVI 567614 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.78;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4054,465,0 chrXVI 568012 . T G 4103.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.18;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4103,474,0 chrXVI 568030 . C T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.83;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4133,453,0 chrXVI 568268 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.04;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4033,441,0 chrXVI 568274 . T A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.80;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3781,429,0 chrXVI 568866 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.570;QD=21.80;ReadPosRankSum=1.668;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3510,402,0 chrXVI 568979 . G T 2676 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=19.25;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2709,294,0 chrXVI 569053 . A G 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=142;Dels=0.00;FS=6.114;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;MQRankSum=1.887;QD=12.39;ReadPosRankSum=2.951;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:1792,207,0 chrXVI 569106 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.77;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:2716,297,0 chrXVI 569371 . G A 5091.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.43;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5091,564,0 chrXVI 569426 . C T 5609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=243;Dels=0.00;FS=4.125;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.675;QD=23.08;ReadPosRankSum=1.475;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5609,618,0 chrXVI 569516 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.11;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2888,321,0 chrXVI 569684 . G C 3112 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=16.1269;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.07;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3145,357,0 chrXVI 569711 . A C 2953 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.89;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2986,345,0 chrXVI 569888 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.04;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2683,303,0 chrXVI 569918 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.69;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3456,378,0 chrXVI 569981 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.25;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3104,348,0 chrXVI 570048 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=22.21;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2876,318,0 chrXVI 570086 . T C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.685;QD=20.93;ReadPosRankSum=1.571;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2754,312,0 chrXVI 570118 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.64;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2587,282,0 chrXVI 570121 . A T 2436 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.82;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2469,267,0 chrXVI 570186 . A G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=118;Dels=0.00;FS=2.734;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-1.282;QD=20.47;ReadPosRankSum=2.408;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2448,279,0 chrXVI 570251 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.11;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2777,309,0 chrXVI 570266 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=19.13;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2597,285,0 chrXVI 570287 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.274;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.732;QD=18.43;ReadPosRankSum=1.656;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2539,288,0 chrXVI 570404 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.53;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2201,255,0 chrXVI 570409 . G C 2248 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.73;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2281,261,0 chrXVI 570452 . T C 2364 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.22;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2397,279,0 chrXVI 570701 . C T 3081 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.01;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3114,345,0 chrXVI 570800 . G A 4163.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.50;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4163,465,0 chrXVI 570880 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1830;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.16;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3428,378,0 chrXVI 570905 . T C 2983 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.93;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3016,345,0 chrXVI 570989 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.202;QD=22.61;ReadPosRankSum=1.703;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2769,315,0 chrXVI 571076 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.38;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2675,306,0 chrXVI 571100 . A G 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.899;QD=22.24;ReadPosRankSum=1.699;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2346,273,0 chrXVI 571193 . G A 2129 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.41;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2162,246,0 chrXVI 571220 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.84;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1971,225,0 chrXVI 571277 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=70;Dels=0.00;FS=6.169;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.464;QD=18.91;ReadPosRankSum=2.871;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1357,156,0 chrXVI 571413 . A T 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=3.565;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.439;QD=23.21;ReadPosRankSum=1.686;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1774,201,0 chrXVI 571446 . T A 1791 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.96;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1824,201,0 chrXVI 571582 . A G 2658 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.97;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2691,309,0 chrXVI 571598 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.32;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2677,300,0 chrXVI 571664 . A T 3927.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.66;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3927,441,0 chrXVI 571690 . T C 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.714;QD=23.56;ReadPosRankSum=1.696;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4571,519,0 chrXVI 571905 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=3.636;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.253;QD=23.10;ReadPosRankSum=1.711;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3835,438,0 chrXVI 571918 . A T 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;MQRankSum=-1.475;QD=22.84;ReadPosRankSum=1.709;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3380,372,0 chrXVI 571946 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=18.21;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1909,213,0 chrXVI 571989 . A T 685 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=2;QD=12.23;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:78:718,78,0 chrXVI 572003 . A G 450 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=2;QD=9.37;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:57:483,57,0 chrXVI 572038 . A T 871 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=2;QD=17.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:904,99,0 chrXVI 572041 . C A 823 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=48.0350;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=1;QD=15.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:51:93:856,93,0 chrXVI 572047 . A T 804 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=42.6464;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:93:837,93,0 chrXVI 572056 . T G 840 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=15.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:873,99,0 chrXVI 572060 . A G 704 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=14.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:84:737,84,0 chrXVI 572061 . C G 681 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=14.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:81:714,81,0 chrXVI 572063 . C T 733 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=15.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:84:766,84,0 chrXVI 572064 . C T 732 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=15.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:84:765,84,0 chrXVI 572075 . T C 526 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=9.74;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:63:559,63,0 chrXVI 572076 . T C 521 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=9.65;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:63:554,63,0 chrXVI 572077 . T C 540 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=10.00;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:66:573,66,0 chrXVI 572105 . C G 767 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=10.96;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:93:800,93,0 chrXVI 572106 . A C 712 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=10.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:70:87:745,87,0 chrXVI 572116 . A T 738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=0.903;QD=10.39;ReadPosRankSum=1.683;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:87:771,87,0 chrXVI 572246 . A G 523 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=6.54;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:69:556,69,0 chrXVI 572250 . T C 520 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;MQRankSum=0.640;QD=6.58;ReadPosRankSum=2.325;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:2,77:79:63:553,63,0 chrXVI 572260 . C T 599 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=7.40;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:72:632,72,0 chrXVI 572263 . T C 551 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;MQRankSum=-1.325;QD=6.48;ReadPosRankSum=1.610;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,84:85:69:584,69,0 chrXVI 572268 . C A 588 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=6.68;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:72:621,72,0 chrXVI 572357 . T C 2624 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=19.01;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2657,312,0 chrXVI 572382 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=20.16;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2996,330,0 chrXVI 572559 . T C 1916 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=21.29;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1949,222,0 chrXVI 572563 . G T 1927 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=21.90;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1960,216,0 chrXVI 573140 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=141;Dels=0.00;FS=5.582;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.321;QD=21.58;ReadPosRankSum=2.865;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3076,357,0 chrXVI 573396 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.10;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4320,480,0 chrXVI 573515 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;DP=169;Dels=0.00;FS=6.061;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.440;QD=20.35;ReadPosRankSum=2.922;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3439,408,0 chrXVI 573602 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.635;QD=17.19;ReadPosRankSum=1.694;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3127,363,0 chrXVI 573609 . A G 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=4.217;HaplotypeScore=6.2669;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.384;QD=15.77;ReadPosRankSum=1.691;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:2714,321,0 chrXVI 573711 . G A 4633.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.17;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4633,501,0 chrXVI 573974 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.82;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3447,393,0 chrXVI 574057 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.69;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3861,426,0 chrXVI 574108 . A T 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.508;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.291;QD=17.41;ReadPosRankSum=1.710;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2766,309,0 chrXVI 574109 . T C 2721 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.22;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2754,315,0 chrXVI 574122 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=15.04;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2590,297,0 chrXVI 574147 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=15.19;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2373,261,0 chrXVI 574276 . A C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.340;QD=23.09;ReadPosRankSum=1.711;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3925,453,0 chrXVI 574640 . T C 6358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=289;Dels=0.00;FS=9.406;HaplotypeScore=20.4159;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.940;QD=22.00;ReadPosRankSum=2.933;SB=-3.438e+03 GT:AD:DP:GQ:PL 1/1:3,280:289:99:6358,726,0 chrXVI 574820 . A G 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.339;QD=19.95;ReadPosRankSum=1.703;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:4768,540,0 chrXVI 574829 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.015;QD=18.87;ReadPosRankSum=1.645;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:4490,516,0 chrXVI 574915 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.43;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4060,444,0 chrXVI 575003 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.20;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3392,399,0 chrXVI 575028 . A G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.175;DP=160;Dels=0.00;FS=5.159;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.169;QD=19.51;ReadPosRankSum=3.361;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:3154,357,0 chrXVI 575320 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.64;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3041,333,0 chrXVI 575390 . G T 2780 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.38;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2813,324,0 chrXVI 575468 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.298;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.222;QD=23.66;ReadPosRankSum=1.710;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3715,420,0 chrXVI 575601 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.10;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1499,168,0 chrXVI 575759 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=25.63;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3057,339,0 chrXVI 575828 . G C 2267 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4318;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.90;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2300,261,0 chrXVI 575871 . T C 2565 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.55;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2598,297,0 chrXVI 575912 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.5299;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.92;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3013,330,0 chrXVI 575958 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.62;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2544,282,0 chrXVI 575959 . G T 2504 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.56;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2537,282,0 chrXVI 576040 . C A 2200 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.75;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2233,249,0 chrXVI 576041 . G T 2238 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.92;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2271,249,0 chrXVI 576179 . C G 2254 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.32;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2287,255,0 chrXVI 576287 . C G 1913 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.49;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1946,222,0 chrXVI 576345 . A T 2127 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=83.1197;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.82;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2160,252,0 chrXVI 576347 . G C 1872 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=85.8414;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=16.86;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1905,228,0 chrXVI 576572 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=180;Dels=0.00;FS=5.825;HaplotypeScore=12.3307;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.838;QD=21.66;ReadPosRankSum=2.894;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3899,447,0 chrXVI 576653 . A G 4386.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.3584;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.59;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4386,524,0 chrXVI 576758 . T G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.7336;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.006;QD=21.82;ReadPosRankSum=2.214;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3863,450,0 chrXVI 576887 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.09;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3513,390,0 chrXVI 576959 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.6729;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.99;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3702,414,0 chrXVI 576985 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.413;DP=162;Dels=0.00;FS=16.183;HaplotypeScore=12.3857;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.686;QD=20.40;ReadPosRankSum=3.668;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:5,155:162:99:3304,381,0 chrXVI 577046 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.644;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.133;QD=21.21;ReadPosRankSum=1.711;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3457,422,0 chrXVI 577272 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.75;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2900,318,0 chrXVI 577381 . C A 1975 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.70;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2008,228,0 chrXVI 577411 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.32;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1945,213,0 chrXVI 577561 . C A 1405 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.49;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1438,162,0 chrXVI 577562 . A T 1407 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.76;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1440,162,0 chrXVI 577582 . T C 1639 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.06;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1672,189,0 chrXVI 577654 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.13;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2639,294,0 chrXVI 577750 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0253;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.61;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2609,288,0 chrXVI 577813 . G A 5081.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.20;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5081,552,0 chrXVI 577966 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=21.1302;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.82;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4063,491,0 chrXVI 578041 . C G 6989.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=14.1356;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.64;SB=-3.699e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:6989,801,0 chrXVI 578104 . G A 6983.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=16.6609;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.67;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6983,768,0 chrXVI 578155 . G A 7252.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=9.9029;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.08;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:7252,784,0 chrXVI 578173 . A G 5694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.722;DP=337;Dels=0.00;FS=4.557;HaplotypeScore=4.5179;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-1.372;QD=16.90;ReadPosRankSum=1.691;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:1,336:337:99:5694,683,0 chrXVI 578188 . C T 5627.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=16.85;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:0,334:334:99:5627,621,0 chrXVI 578197 . T C 5365.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=15.73;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:0,341:341:99:5365,612,0 chrXVI 578287 . T C 5310.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=14.3356;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.63;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:5310,609,0 chrXVI 578350 . A G 6166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=316;Dels=0.00;FS=4.909;HaplotypeScore=22.5720;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.673;QD=19.51;ReadPosRankSum=3.389;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:4,310:316:99:6166,708,0 chrXVI 578605 . A G 4442.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.95;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4442,522,0 chrXVI 578623 . G A 4394.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.8336;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.42;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4394,483,0 chrXVI 578686 . A G 2198 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=12.35;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2231,275,0 chrXVI 578941 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=212;Dels=0.00;FS=3.014;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.065;QD=19.85;ReadPosRankSum=2.356;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4209,480,0 chrXVI 578962 . T C 4631.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.05;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4631,519,0 chrXVI 579256 . A G 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=217;Dels=0.00;FS=4.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.347;QD=21.72;ReadPosRankSum=1.700;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4714,546,0 chrXVI 579598 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.21;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3575,417,0 chrXVI 579706 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.3988;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.73;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2749,300,0 chrXVI 579787 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.25;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3540,396,0 chrXVI 580156 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.3135;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.601;QD=22.24;ReadPosRankSum=1.626;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4382,504,0 chrXVI 580240 . A T 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.386;QD=22.45;ReadPosRankSum=1.714;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4265,465,0 chrXVI 580258 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=189;Dels=0.00;FS=5.608;HaplotypeScore=2.9492;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-1.208;QD=20.30;ReadPosRankSum=2.665;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:3836,438,0 chrXVI 580273 . T C 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.606;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.258;QD=20.28;ReadPosRankSum=1.679;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3954,450,0 chrXVI 580513 . G A 5188.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.80;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5188,570,0 chrXVI 580618 . A G 5386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=238;Dels=0.00;FS=9.254;HaplotypeScore=13.3524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.462;QD=22.63;ReadPosRankSum=2.953;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:3,234:238:99:5386,612,0 chrXVI 580810 . C T 5082.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=19.4840;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.89;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5082,549,0 chrXVI 580849 . T C 5062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=3.342;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.067;QD=21.91;ReadPosRankSum=1.642;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5062,602,0 chrXVI 580882 . C T 5155.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.22;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5155,573,0 chrXVI 580936 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.0012;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.00;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3960,450,0 chrXVI 581005 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=237;Dels=0.00;FS=3.476;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.044;QD=20.45;ReadPosRankSum=1.717;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4846,569,0 chrXVI 581014 . T C 4839.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=6.0710;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.67;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:4839,552,0 chrXVI 581104 . A G 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7945;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.636;QD=22.93;ReadPosRankSum=1.697;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4494,519,0 chrXVI 581158 . A C 3417.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=22.19;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3417,410,0 chrXVI 581172 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=20.86;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3225,375,0 chrXVI 581418 . G A 508 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.93;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:60:541,60,0 chrXVI 581427 . C T 532 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.16;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:60:565,60,0 chrXVI 581428 . C T 546 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.61;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:63:579,63,0 chrXVI 581444 . C T 573 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=0;QD=16.85;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:69:606,69,0 chrXVI 581445 . G A 610 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=0;QD=17.94;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:72:643,72,0 chrXVI 581461 . G A 694 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=18.26;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:81:727,81,0 chrXVI 581474 . C T 690 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=18.65;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:723,78,0 chrXVI 581499 . A G 897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=48;Dels=0.00;FS=2.667;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=0.343;QD=18.69;ReadPosRankSum=2.345;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:2,45:48:99:930,108,0 chrXVI 581539 . G C 916 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=16.36;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:949,111,0 chrXVI 581566 . A G 831 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;QD=15.39;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:864,108,0 chrXVI 581572 . A C 719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=5.699;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;MQRankSum=-0.800;QD=13.83;ReadPosRankSum=1.599;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:87:752,87,0 chrXVI 581602 . C T 491 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=11.16;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:57:524,57,0 chrXVI 581607 . T C 393 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=10.08;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:48:426,48,0 chrXVI 581608 . C T 401 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=10.28;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:48:434,48,0 chrXVI 581643 . T G 302 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=7.74;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:39:335,39,0 chrXVI 581651 . C T 287 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=7.17;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:36:320,36,0 chrXVI 581662 . T G 411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;MQRankSum=-1.356;QD=8.93;ReadPosRankSum=1.582;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:51:444,51,0 chrXVI 581701 . A G 707 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=10.25;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:90:740,90,0 chrXVI 581711 . A T 713 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=8.91;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:87:746,87,0 chrXVI 581715 . G A 807 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=9.28;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:96:840,96,0 chrXVI 581744 . C T 970 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=9.07;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1003,120,0 chrXVI 581747 . C A 964 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=9.45;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:997,117,0 chrXVI 581748 . A G 937 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=9.01;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:970,117,0 chrXVI 581829 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=6.165;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;MQRankSum=0.962;QD=21.49;ReadPosRankSum=1.709;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3310,378,0 chrXVI 581896 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=24.50;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3504,384,0 chrXVI 582013 . C A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=20.13;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3886,429,0 chrXVI 582026 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=18.96;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3565,393,0 chrXVI 582039 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=18.59;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3365,375,0 chrXVI 582043 . T G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-1.055;QD=18.40;ReadPosRankSum=1.093;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3294,387,0 chrXVI 582149 . A G 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=97;Dels=0.00;FS=2.608;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.865;QD=16.98;ReadPosRankSum=2.928;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1680,195,0 chrXVI 582272 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=122;Dels=0.00;FS=7.905;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.189;QD=22.12;ReadPosRankSum=2.409;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2732,306,0 chrXVI 582448 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=4.386;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.534;QD=22.42;ReadPosRankSum=1.707;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3172,372,0 chrXVI 582598 . T C 2450 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.48;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2483,285,0 chrXVI 582607 . T G 2523 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.75;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2556,288,0 chrXVI 582615 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=120;Dels=0.00;FS=2.572;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.454;QD=21.37;ReadPosRankSum=2.942;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2598,303,0 chrXVI 582618 . A G 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=1.564;QD=21.94;ReadPosRankSum=1.704;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2753,312,0 chrXVI 582788 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.80;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2383,264,0 chrXVI 582795 . T C 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.2923;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.738;QD=19.80;ReadPosRankSum=1.700;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2171,249,0 chrXVI 582837 . A G 3045 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.44;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3078,348,0 chrXVI 582915 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.64;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3917,426,0 chrXVI 582921 . T C 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.008;QD=20.63;ReadPosRankSum=1.673;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3693,420,0 chrXVI 582996 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=186;Dels=0.00;FS=2.955;HaplotypeScore=20.2868;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.348;QD=20.90;ReadPosRankSum=2.410;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3887,444,0 chrXVI 583060 . G C 5197.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.56;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,237:241:99:5197,594,0 chrXVI 583181 . C T 4705.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.1763;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.84;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4705,516,0 chrXVI 583248 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.7573;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.53;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3577,428,0 chrXVI 583395 . C T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.99;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4069,456,0 chrXVI 583481 . G T 3123 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.0548;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=19.64;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3156,360,0 chrXVI 583659 . A G 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.4120;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.156;QD=18.05;ReadPosRankSum=1.691;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3084,363,0 chrXVI 583665 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=3.190;HaplotypeScore=7.6234;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.010;QD=18.55;ReadPosRankSum=1.612;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3242,375,0 chrXVI 583703 . T A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.3708;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.26;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3545,399,0 chrXVI 583743 . T A 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=189;Dels=0.00;FS=3.626;HaplotypeScore=7.7978;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.530;QD=22.56;ReadPosRankSum=1.714;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4263,468,0 chrXVI 583962 . T C 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=147;Dels=0.00;FS=6.544;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.429;QD=18.84;ReadPosRankSum=2.315;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2803,321,0 chrXVI 584088 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=119;Dels=0.00;FS=6.286;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.284;QD=21.09;ReadPosRankSum=2.324;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,115:119:99:2543,288,0 chrXVI 584114 . T C 2620 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.83;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2653,303,0 chrXVI 584210 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=107;Dels=0.00;FS=2.897;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=-0.708;QD=22.81;ReadPosRankSum=2.380;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2474,279,0 chrXVI 584219 . A G 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.089;QD=22.41;ReadPosRankSum=1.696;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2229,261,0 chrXVI 584333 . T C 2455 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=20.98;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2488,291,0 chrXVI 584345 . C T 2512 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=21.29;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2545,279,0 chrXVI 584359 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=18.63;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2176,246,0 chrXVI 584447 . G A 850 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=7.94;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:883,99,0 chrXVI 584453 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=8.59;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:978,108,0 chrXVI 584469 . G C 1340 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=11.65;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1373,159,0 chrXVI 584857 . A G 5022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=249;Dels=0.00;FS=4.415;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.296;QD=20.17;ReadPosRankSum=1.676;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,245:249:99:5022,605,0 chrXVI 584912 . T A 7203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=24.9642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.199;QD=21.76;ReadPosRankSum=1.722;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:1,329:331:99:7203,837,0 chrXVI 585037 . G A 5040.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.7080;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.83;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5040,570,0 chrXVI 585060 . T C 5748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=285;Dels=0.00;FS=4.260;HaplotypeScore=12.9048;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.262;QD=20.17;ReadPosRankSum=1.720;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:1,280:285:99:5748,654,0 chrXVI 585153 . A G 5761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=282;Dels=0.00;FS=2.398;HaplotypeScore=22.5194;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.844;QD=20.43;ReadPosRankSum=3.393;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:4,276:282:99:5761,654,0 chrXVI 585208 . A T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=19.0375;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.26;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3635,405,0 chrXVI 585391 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=145;Dels=0.00;FS=2.785;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.043;QD=21.92;ReadPosRankSum=2.295;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3211,372,0 chrXVI 585566 . T C 2944 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.65;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2977,342,0 chrXVI 585624 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3338,369,0 chrXVI 585743 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.28;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3068,339,0 chrXVI 585774 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1631;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.64;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3089,345,0 chrXVI 585894 . A G 2972 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.64;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3005,357,0 chrXVI 585958 . A G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=131;Dels=0.00;FS=6.028;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.469;QD=22.17;ReadPosRankSum=2.947;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2937,339,0 chrXVI 586036 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.348;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.318;QD=20.20;ReadPosRankSum=1.709;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3022,354,0 chrXVI 586133 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.951;QD=22.07;ReadPosRankSum=1.683;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3167,366,0 chrXVI 586291 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8469;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.92;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2782,303,0 chrXVI 586309 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.935;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.102;QD=20.46;ReadPosRankSum=2.339;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2774,324,0 chrXVI 586497 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=160;Dels=0.00;FS=2.699;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-1.909;QD=21.03;ReadPosRankSum=2.388;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3365,387,0 chrXVI 586509 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.41;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3425,378,0 chrXVI 586546 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.022;QD=20.91;ReadPosRankSum=1.687;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3253,369,0 chrXVI 586768 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=186;Dels=0.00;FS=2.257;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.234;QD=21.59;ReadPosRankSum=2.940;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4015,436,0 chrXVI 586856 . G C 3731.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.17;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3731,420,0 chrXVI 587001 . C T 436 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=2.67;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,26:163:54:469,54,0 chrXVI 587177 . A G 2949 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.2380;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.84;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2982,342,0 chrXVI 587188 . G T 3108 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.36;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3141,339,0 chrXVI 587344 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.03;FS=0.000;HaplotypeScore=11.6755;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.71;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2877,321,0 chrXVI 587432 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.4735;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.03;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3773,432,0 chrXVI 587665 . A C 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=181;Dels=0.00;FS=5.739;HaplotypeScore=14.2208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.737;QD=20.87;ReadPosRankSum=2.905;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:3777,432,0 chrXVI 587753 . A G 2530 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.92;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2563,291,0 chrXVI 587761 . A G 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.487;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.540;QD=20.01;ReadPosRankSum=1.704;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2534,291,0 chrXVI 587806 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.46;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2651,294,0 chrXVI 587838 . C T 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.859;QD=22.81;ReadPosRankSum=0.357;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3021,333,0 chrXVI 587915 . C A 2574 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2607,297,0 chrXVI 587952 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.37;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3826,423,0 chrXVI 588012 . C A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.74;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3366,384,0 chrXVI 588257 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.08;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2373,258,0 chrXVI 588493 . T C 2770 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.64;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2803,330,0 chrXVI 588777 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.60;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3101,348,0 chrXVI 588825 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.99;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3358,363,0 chrXVI 588877 . A G 2235 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.10;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2268,258,0 chrXVI 588898 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.61;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2453,267,0 chrXVI 588931 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.05;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2525,282,0 chrXVI 588991 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.34;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3463,399,0 chrXVI 589077 . A T 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=151;Dels=0.00;FS=5.258;HaplotypeScore=11.4341;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;MQRankSum=-0.310;QD=22.41;ReadPosRankSum=1.342;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3384,375,0 chrXVI 589172 . C T 5149.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.5839;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=23.40;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5149,561,0 chrXVI 589257 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;QD=17.56;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2860,312,0 chrXVI 589268 . A G 2988 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=17.17;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3021,348,0 chrXVI 589367 . C G 185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.774;DP=211;Dels=0.00;FS=5.058;HaplotypeScore=354.8648;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;MQRankSum=1.539;QD=0.88;ReadPosRankSum=-10.365;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:165,46:211:27:218,27,0 chrXVI 589380 . A G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;MQRankSum=0.660;QD=12.65;ReadPosRankSum=1.666;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:2702,306,0 chrXVI 589494 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=24.35;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3798,414,0 chrXVI 589510 . T A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=24.13;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4391,486,0 chrXVI 589604 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=172;Dels=0.00;FS=11.117;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;MQRankSum=-0.059;QD=21.90;ReadPosRankSum=2.900;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3767,432,0 chrXVI 589740 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.336;HaplotypeScore=7.4642;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;MQRankSum=-1.732;QD=18.60;ReadPosRankSum=1.711;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3120,357,0 chrXVI 589747 . A G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=6.952;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;MQRankSum=-2.177;QD=16.89;ReadPosRankSum=2.353;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2617,303,0 chrXVI 589764 . T C 2589 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;QD=16.81;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2622,300,0 chrXVI 589765 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;QD=16.01;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2499,299,0 chrXVI 589781 . T A 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.206;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;MQRankSum=1.231;QD=13.99;ReadPosRankSum=1.710;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2257,255,0 chrXVI 589795 . G C 2315 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.4875;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=14.75;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2348,267,0 chrXVI 589798 . G A 2081 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.4875;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=15.08;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2114,234,0 chrXVI 589800 . C T 2020 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5717;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=14.64;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2053,234,0 chrXVI 589802 . T G 2019 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=14.63;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2052,234,0 chrXVI 589811 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=14.26;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2286,249,0 chrXVI 589832 . T C 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=4.532;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;MQRankSum=1.623;QD=12.65;ReadPosRankSum=1.710;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2044,234,0 chrXVI 589870 . T C 1403 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=133.7030;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=10.09;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1436,165,0 chrXVI 590012 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.02;FS=0.000;HaplotypeScore=21.5002;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=20.56;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2171,240,0 chrXVI 590043 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=20.65;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1974,222,0 chrXVI 590060 . T C 2016 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=20.78;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2049,237,0 chrXVI 590196 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4924;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=22.68;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2346,270,0 chrXVI 590239 . T G 2054 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.75;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2087,252,0 chrXVI 590262 . A T 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=3.918;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.817;QD=21.16;ReadPosRankSum=1.699;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2276,255,0 chrXVI 590373 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=23.03;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4099,453,0 chrXVI 590394 . T G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=0.125;QD=19.29;ReadPosRankSum=1.690;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3255,369,0 chrXVI 590397 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=18.48;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3082,363,0 chrXVI 590430 . T G 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.3488;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.372;QD=18.68;ReadPosRankSum=1.656;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:3455,390,0 chrXVI 590523 . G A 5861.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.63;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5861,642,0 chrXVI 590563 . A G 5409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=258;Dels=0.00;FS=3.552;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.516;QD=20.97;ReadPosRankSum=1.664;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:1,255:258:99:5409,627,0 chrXVI 590589 . C T 5597.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.7066;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.86;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5597,609,0 chrXVI 590724 . A G 6776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=303;Dels=0.00;FS=9.649;HaplotypeScore=27.9830;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.983;QD=22.36;ReadPosRankSum=2.964;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:3,300:303:99:6776,777,0 chrXVI 590813 . G A 5847.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.1973;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.93;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5847,645,0 chrXVI 591000 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=175;Dels=0.00;FS=2.348;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.804;QD=17.59;ReadPosRankSum=3.410;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:4,171:175:99:3111,360,0 chrXVI 591009 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.69;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,150:153:99:2892,321,0 chrXVI 591334 . G A 2400 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.08;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2433,276,0 chrXVI 591462 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=9.134;HaplotypeScore=13.3737;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.010;QD=23.86;ReadPosRankSum=2.410;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3015,345,0 chrXVI 591540 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.4312;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=22.15;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3222,354,0 chrXVI 591603 . T G 3116 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.91;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3149,369,0 chrXVI 591748 . T C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=7.053;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;MQRankSum=-1.901;QD=13.27;ReadPosRankSum=2.226;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1639,192,0 chrXVI 591790 . A G 2017 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=14.94;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2050,237,0 chrXVI 591791 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=15.30;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2129,234,0 chrXVI 591826 . A G 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=160;Dels=0.00;FS=6.078;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.045;QD=18.03;ReadPosRankSum=2.878;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:3,154:160:99:2918,336,0 chrXVI 591845 . T A 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-0.700;QD=19.38;ReadPosRankSum=1.686;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2960,333,0 chrXVI 591899 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.95;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3465,378,0 chrXVI 593126 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.32;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1729,192,0 chrXVI 593197 . G T 1992 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.59;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2025,222,0 chrXVI 593234 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.58;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1495,171,0 chrXVI 593316 . T C 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.144;QD=19.04;ReadPosRankSum=1.684;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1404,165,0 chrXVI 593317 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.53;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1367,165,0 chrXVI 593372 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.56;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1703,189,0 chrXVI 593408 . T C 1944 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.34;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1977,237,0 chrXVI 593438 . T C 1948 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.64;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1981,225,0 chrXVI 593464 . T C 2159 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.76;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2192,249,0 chrXVI 593540 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.41;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2991,336,0 chrXVI 593569 . T G 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.480;QD=21.01;ReadPosRankSum=1.663;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3247,369,0 chrXVI 593582 . A G 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=4.213;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.509;QD=20.34;ReadPosRankSum=1.709;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3145,377,0 chrXVI 593633 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.92;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,162:168:99:3346,384,0 chrXVI 593860 . C T 5225.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.05;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5225,579,0 chrXVI 593867 . G C 4970.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.71;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,235:240:99:4970,579,0 chrXVI 593963 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=172;Dels=0.00;FS=12.450;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.308;QD=20.34;ReadPosRankSum=2.947;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3499,399,0 chrXVI 594005 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.580;HaplotypeScore=12.1261;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.732;QD=21.16;ReadPosRankSum=1.714;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3999,453,0 chrXVI 594058 . T C 5441.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.03;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5441,636,0 chrXVI 594078 . G A 5579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.019;QD=22.96;ReadPosRankSum=1.404;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5579,618,0 chrXVI 594115 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.42;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4043,456,0 chrXVI 594210 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3773;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.31;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3659,402,0 chrXVI 594253 . G A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.79;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3639,402,0 chrXVI 594266 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.4046;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.78;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3741,414,0 chrXVI 594355 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=161;Dels=0.00;FS=3.032;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.144;QD=21.86;ReadPosRankSum=2.419;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3520,417,0 chrXVI 594386 . G A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0136;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.63;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3461,393,0 chrXVI 594625 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=209;Dels=0.00;FS=5.592;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.432;QD=19.32;ReadPosRankSum=2.908;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:3,204:209:99:4038,479,0 chrXVI 594633 . G A 4350.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.5793;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.52;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4350,477,0 chrXVI 594667 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=15.27;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:3436,390,0 chrXVI 594669 . A C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=227;Dels=0.00;FS=2.335;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-1.420;QD=15.02;ReadPosRankSum=2.801;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:3409,393,0 chrXVI 594747 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=207;Dels=0.00;FS=7.070;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.208;QD=18.72;ReadPosRankSum=2.414;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:3876,447,0 chrXVI 594764 . C G 4211.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8376;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.44;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4211,474,0 chrXVI 594861 . A G 6139.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.1530;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.17;SB=-3.318e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:6139,693,0 chrXVI 594974 . A C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=200;Dels=0.00;FS=2.969;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.227;QD=20.03;ReadPosRankSum=2.388;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4005,476,0 chrXVI 594975 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.78;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:3996,468,0 chrXVI 595114 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.80;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3859,429,0 chrXVI 595421 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.06;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3390,375,0 chrXVI 595439 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.26;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3380,366,0 chrXVI 595451 . C A 3203 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.65;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3236,354,0 chrXVI 595531 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0534;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.636;QD=23.05;ReadPosRankSum=2.399;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3342,393,0 chrXVI 595601 . A G 5478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=228;Dels=0.00;FS=9.132;HaplotypeScore=8.5002;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.954;QD=24.03;ReadPosRankSum=2.406;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5478,615,0 chrXVI 595717 . T C 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.543;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=1.399;QD=19.99;ReadPosRankSum=1.665;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3152,375,0 chrXVI 595838 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.84;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3918,426,0 chrXVI 595958 . T C 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=145;Dels=0.00;FS=2.681;HaplotypeScore=5.8186;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.555;QD=18.44;ReadPosRankSum=2.330;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2707,306,0 chrXVI 595961 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.0299;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.98;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2785,312,0 chrXVI 595988 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=14.96;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1768,204,0 chrXVI 595999 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=13.35;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1515,171,0 chrXVI 596083 . G C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.58;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3560,423,0 chrXVI 596138 . T C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=149;Dels=0.00;FS=10.216;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.337;QD=21.21;ReadPosRankSum=2.367;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3193,360,0 chrXVI 596170 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.76;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2918,336,0 chrXVI 596424 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.80;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3553,405,0 chrXVI 596438 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.110;QD=20.51;ReadPosRankSum=1.628;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3466,396,0 chrXVI 596477 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=3.158;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.386;QD=20.37;ReadPosRankSum=1.703;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2477,279,0 chrXVI 596587 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.43;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3056,339,0 chrXVI 596625 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.27;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2965,321,0 chrXVI 596663 . C G 2912 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.93;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2945,336,0 chrXVI 596701 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.04;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3110,339,0 chrXVI 596886 . T C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=6.461;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.158;QD=20.99;ReadPosRankSum=2.394;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2804,321,0 chrXVI 596932 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.62;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3087,342,0 chrXVI 597024 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.98;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3981,435,0 chrXVI 597187 . A G 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=172;Dels=0.00;FS=3.358;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.117;QD=22.15;ReadPosRankSum=1.671;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3810,452,0 chrXVI 597694 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4402,489,0 chrXVI 597958 . A T 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=228;Dels=0.00;FS=7.911;HaplotypeScore=17.1301;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.297;QD=22.48;ReadPosRankSum=2.417;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5125,567,0 chrXVI 598117 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.10;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4464,501,0 chrXVI 598171 . A G 4238.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.19;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4238,489,0 chrXVI 598249 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.35;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3830,435,0 chrXVI 598282 . G A 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=158;Dels=0.00;FS=3.661;HaplotypeScore=10.9376;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.548;QD=22.68;ReadPosRankSum=1.666;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3584,377,0 chrXVI 598678 . C A 4789.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=19.8699;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.48;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4789,531,0 chrXVI 598966 . C T 4909.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4909,546,0 chrXVI 599131 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4030,462,0 chrXVI 599378 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.66;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3526,390,0 chrXVI 599572 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.47;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2235,243,0 chrXVI 600272 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.569;QD=20.12;ReadPosRankSum=2.291;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1904,219,0 chrXVI 600285 . T G 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=89;Dels=0.00;FS=4.723;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.615;QD=20.40;ReadPosRankSum=1.693;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1849,207,0 chrXVI 600395 . T G 814 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.42;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:847,99,0 chrXVI 600772 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1476,171,0 chrXVI 600877 . C A 1851 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1884,213,0 chrXVI 601297 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=21.95;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2908,318,0 chrXVI 601315 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=19.59;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2599,288,0 chrXVI 601330 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.69;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2262,261,0 chrXVI 601528 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2637;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.85;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2910,333,0 chrXVI 601537 . G T 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.201;QD=20.76;ReadPosRankSum=0.416;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2711,309,0 chrXVI 601645 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.683;QD=21.67;ReadPosRankSum=1.700;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2417,282,0 chrXVI 601857 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.28;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2780,306,0 chrXVI 601953 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=98;Dels=0.00;FS=6.431;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.691;QD=19.91;ReadPosRankSum=2.374;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1984,225,0 chrXVI 601963 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.73;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2023,225,0 chrXVI 602032 . A G 2185 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.61;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2218,252,0 chrXVI 602136 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.06;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2583,291,0 chrXVI 602419 . A G 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.793;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.818;QD=21.96;ReadPosRankSum=1.694;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2075,234,0 chrXVI 602439 . A G 2008 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.83;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2041,231,0 chrXVI 602623 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.85;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2203,246,0 chrXVI 603262 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.691;QD=22.04;ReadPosRankSum=1.690;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3593,405,0 chrXVI 603283 . A C 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.610;QD=20.59;ReadPosRankSum=1.708;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2998,345,0 chrXVI 603364 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.83;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3559,417,0 chrXVI 603514 . A G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.264;QD=22.41;ReadPosRankSum=1.703;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2677,300,0 chrXVI 603616 . G T 2188 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.03;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2221,243,0 chrXVI 603617 . G T 2187 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.02;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2220,243,0 chrXVI 603737 . A T 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.058;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.656;QD=23.89;ReadPosRankSum=1.656;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2207,246,0 chrXVI 603773 . C A 2243 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.61;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2276,249,0 chrXVI 604022 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.83;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2449,279,0 chrXVI 604052 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.95;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2887,315,0 chrXVI 604076 . A G 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=6.752;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.765;QD=18.62;ReadPosRankSum=2.346;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2695,312,0 chrXVI 604091 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.35;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2859,318,0 chrXVI 604106 . G T 3121 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.69;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3154,348,0 chrXVI 604538 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9229;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.12;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3955,435,0 chrXVI 604949 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.16;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3431,375,0 chrXVI 605025 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.108;QD=22.08;ReadPosRankSum=1.696;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2175,249,0 chrXVI 605063 . T A 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=2.987;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.794;QD=22.95;ReadPosRankSum=2.409;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2787,315,0 chrXVI 605090 . T G 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=145;Dels=0.00;FS=2.979;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.885;QD=20.20;ReadPosRankSum=2.346;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2962,333,0 chrXVI 605225 . T C 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=119;Dels=0.00;FS=3.032;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.789;QD=20.87;ReadPosRankSum=2.324;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,115:119:99:2516,291,0 chrXVI 605750 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.80;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3570,405,0 chrXVI 606023 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.49;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2979,327,0 chrXVI 606380 . T C 786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.542;DP=153;Dels=0.00;FS=2.500;HaplotypeScore=145.7102;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;MQRankSum=2.739;QD=5.14;ReadPosRankSum=-5.488;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:98,55:153:93:819,93,0 chrXVI 606814 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.20;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3575,408,0 chrXVI 606815 . C A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.45;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3660,408,0 chrXVI 606832 . C G 3998.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.6777;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.69;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3998,456,0 chrXVI 606934 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.652;DP=171;Dels=0.00;FS=12.278;HaplotypeScore=11.4027;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.563;QD=21.89;ReadPosRankSum=3.744;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:5,165:171:99:3744,417,0 chrXVI 607028 . T G 2799 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.89;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2832,330,0 chrXVI 607353 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1454,168,0 chrXVI 607836 . A C 445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.5190;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=0.051;QD=5.30;ReadPosRankSum=1.630;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,68:84:57:478,57,0 chrXVI 607854 . C T 1208 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4188;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=14.91;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1241,141,0 chrXVI 608142 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0287;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=24.64;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3893,426,0 chrXVI 608221 . A G 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=3.332;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.247;QD=24.13;ReadPosRankSum=1.691;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4053,459,0 chrXVI 608268 . T C 3692.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=20.74;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3692,414,0 chrXVI 608269 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=3.931;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;MQRankSum=1.070;QD=19.21;ReadPosRankSum=1.713;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3419,407,0 chrXVI 608411 . T G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.839;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.400;QD=21.10;ReadPosRankSum=1.193;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3544,405,0 chrXVI 608465 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.99;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2741,318,0 chrXVI 608678 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.194;DP=140;Dels=0.00;FS=2.802;HaplotypeScore=4.0782;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.822;QD=19.58;ReadPosRankSum=1.265;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2774,297,0 chrXVI 608924 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.6569;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.62;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3935,444,0 chrXVI 609195 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.13;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3453,378,0 chrXVI 609204 . T A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.40;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3382,366,0 chrXVI 609333 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.5766;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.64;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3674,408,0 chrXVI 609390 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.16;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3507,381,0 chrXVI 609399 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=177;Dels=0.00;FS=6.939;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.667;QD=19.53;ReadPosRankSum=2.365;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3457,402,0 chrXVI 609523 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2267;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.53;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4033,447,0 chrXVI 609546 . A G 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=172;Dels=0.00;FS=5.822;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.453;QD=18.00;ReadPosRankSum=2.794;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3129,360,0 chrXVI 609547 . A G 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.9112;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=0.819;QD=18.20;ReadPosRankSum=1.691;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3108,351,0 chrXVI 609630 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=3.026;HaplotypeScore=15.0074;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.394;QD=20.77;ReadPosRankSum=2.424;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:3988,444,0 chrXVI 609903 . A G 4761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=229;Dels=0.00;FS=3.428;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.371;QD=20.79;ReadPosRankSum=1.672;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4761,569,0 chrXVI 610056 . C T 5009.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.7650;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.19;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5009,540,0 chrXVI 610223 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.58;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4268,474,0 chrXVI 610298 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.84;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3208,354,0 chrXVI 610303 . T C 2960 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.62;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2993,351,0 chrXVI 610635 . A C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.628;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.023;QD=23.53;ReadPosRankSum=1.711;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3906,447,0 chrXVI 610702 . A T 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=22.2062;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.412;QD=22.38;ReadPosRankSum=1.715;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4521,498,0 chrXVI 610743 . C A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.54;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4084,450,0 chrXVI 610749 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=3.458;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-1.698;QD=18.66;ReadPosRankSum=1.715;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:3826,438,0 chrXVI 610825 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=204;Dels=0.00;FS=9.757;HaplotypeScore=3.2666;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.522;QD=17.17;ReadPosRankSum=2.966;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:3503,399,0 chrXVI 610828 . G A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.20;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3676,408,0 chrXVI 610981 . G A 5191.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.68;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5191,576,0 chrXVI 611302 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.93;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4290,489,0 chrXVI 611386 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=165;Dels=0.00;FS=6.089;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.592;QD=22.59;ReadPosRankSum=2.958;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3727,429,0 chrXVI 611518 . A C 2704 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.8270;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.22;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2737,327,0 chrXVI 611524 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=166;Dels=0.00;FS=3.037;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.936;QD=17.12;ReadPosRankSum=2.375;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:2875,342,0 chrXVI 611686 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.52;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4098,465,0 chrXVI 612448 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4291,474,0 chrXVI 612509 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3767,411,0 chrXVI 612824 . A G 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=155;Dels=0.00;FS=5.458;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.520;QD=19.50;ReadPosRankSum=2.941;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:3055,360,0 chrXVI 612903 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.04;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2541,279,0 chrXVI 612912 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=6.246;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.978;QD=18.27;ReadPosRankSum=2.414;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2573,294,0 chrXVI 613008 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.9555;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.466;QD=22.30;ReadPosRankSum=1.684;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3266,375,0 chrXVI 613103 . T C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=111;Dels=0.00;FS=8.719;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.587;QD=22.38;ReadPosRankSum=2.272;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2517,294,0 chrXVI 613637 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.68;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3620,405,0 chrXVI 613670 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.51;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3489,381,0 chrXVI 613725 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.59;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3150,354,0 chrXVI 613884 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.71;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3386,369,0 chrXVI 613944 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2673,303,0 chrXVI 614016 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.57;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3653,405,0 chrXVI 614103 . A G 2882 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.87;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2915,333,0 chrXVI 614283 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.8532;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.581;QD=20.44;ReadPosRankSum=1.702;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2384,273,0 chrXVI 614470 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.54;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2165,237,0 chrXVI 614501 . A T 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.443;QD=21.91;ReadPosRankSum=1.625;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2859,312,0 chrXVI 614631 . C G 3069 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.88;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3102,357,0 chrXVI 614654 . A T 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=4.502;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.683;QD=23.06;ReadPosRankSum=1.683;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3275,360,0 chrXVI 614701 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.60;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3870,447,0 chrXVI 614798 . A T 3190 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.32;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3223,354,0 chrXVI 614818 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.13;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3844,426,0 chrXVI 614879 . A C 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=222;Dels=0.00;FS=9.059;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.533;QD=19.68;ReadPosRankSum=3.421;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:4,217:222:99:4369,495,0 chrXVI 614926 . T C 4448.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.79;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4448,504,0 chrXVI 614961 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=21.9386;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.373;QD=21.71;ReadPosRankSum=-0.224;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4212,452,0 chrXVI 615128 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.48;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2753,306,0 chrXVI 615151 . A C 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-1.732;QD=18.85;ReadPosRankSum=1.649;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2389,267,0 chrXVI 615159 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.52;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2434,264,0 chrXVI 615302 . T C 886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=69;Dels=0.00;FS=5.514;HaplotypeScore=3.7219;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-1.822;QD=12.84;ReadPosRankSum=2.897;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:3,65:69:99:919,102,0 chrXVI 615310 . C T 1153 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5886;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=15.79;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1186,129,0 chrXVI 615339 . A T 1330 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.27;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1363,150,0 chrXVI 615357 . C G 1357 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=17.40;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1390,156,0 chrXVI 615440 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.95;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2093,231,0 chrXVI 615470 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.48;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2556,276,0 chrXVI 615756 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.270;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.687;QD=21.99;ReadPosRankSum=1.710;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3409,407,0 chrXVI 615882 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.93;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3417,387,0 chrXVI 616361 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.25;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3315,395,0 chrXVI 616518 . T A 2728 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.82;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2761,309,0 chrXVI 616635 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=148;Dels=0.00;FS=8.033;HaplotypeScore=6.6657;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.802;QD=21.03;ReadPosRankSum=2.317;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3146,357,0 chrXVI 616661 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.11;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3222,354,0 chrXVI 616836 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=157;Dels=0.00;FS=6.565;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.103;QD=21.95;ReadPosRankSum=2.418;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3446,393,0 chrXVI 616944 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.32;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3965,438,0 chrXVI 617005 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5602;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.181;QD=23.31;ReadPosRankSum=1.712;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4079,459,0 chrXVI 617130 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=149;Dels=0.00;FS=6.110;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.286;QD=18.79;ReadPosRankSum=2.844;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:2833,336,0 chrXVI 618129 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=176;Dels=0.00;FS=3.772;HaplotypeScore=19.0069;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.398;QD=23.20;ReadPosRankSum=1.712;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4084,462,0 chrXVI 618453 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.363;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.155;QD=22.90;ReadPosRankSum=-1.363;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3458,362,0 chrXVI 618585 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.77;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2697,297,0 chrXVI 618638 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.59;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3344,390,0 chrXVI 618915 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7834;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.34;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2210,246,0 chrXVI 619031 . A T 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.281;QD=19.77;ReadPosRankSum=2.891;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1674,192,0 chrXVI 619062 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.66;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1252,138,0 chrXVI 619148 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.243;DP=60;Dels=0.00;FS=13.320;HaplotypeScore=91.1109;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-1.876;QD=0.28;ReadPosRankSum=-4.777;SB=1.24 GT:AD:DP:GQ:PL 1/1:48,12:60:6:48,6,0 chrXVI 619169 . A G 1296 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=19.64;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1329,153,0 chrXVI 619252 . T G 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=0.098;QD=18.38;ReadPosRankSum=1.667;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1007,117,0 chrXVI 619258 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=18.53;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:978,114,0 chrXVI 619267 . C T 986 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=18.26;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1019,111,0 chrXVI 619292 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=18.34;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1097,120,0 chrXVI 619388 . A G 1876 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.34;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1909,222,0 chrXVI 619408 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.465;QD=20.83;ReadPosRankSum=1.690;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1741,201,0 chrXVI 619457 . C T 1834 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=22.10;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1867,207,0 chrXVI 619477 . A G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.442;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.370;QD=22.97;ReadPosRankSum=1.693;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2077,237,0 chrXVI 619527 . G T 1759 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.84;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1792,195,0 chrXVI 619549 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.650;QD=19.29;ReadPosRankSum=1.691;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1653,192,0 chrXVI 619565 . G C 1315 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=16.86;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1348,153,0 chrXVI 619612 . A T 1946 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.62;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1979,219,0 chrXVI 619659 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.00;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2343,267,0 chrXVI 619680 . C T 2121 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.64;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2154,243,0 chrXVI 619704 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.67;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1918,225,0 chrXVI 619779 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=20.39;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1664,192,0 chrXVI 619798 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=19.90;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1844,204,0 chrXVI 619805 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=19.34;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1716,195,0 chrXVI 619894 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=17.37;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1423,156,0 chrXVI 619910 . C A 1175 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=14.69;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1208,132,0 chrXVI 619974 . A G 979 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=10.20;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1012,114,0 chrXVI 620007 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;QD=11.69;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1050,120,0 chrXVI 620016 . C A 1095 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;QD=13.19;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1128,123,0 chrXVI 620115 . A G 1594 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.97;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1627,183,0 chrXVI 620225 . T C 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.713;QD=16.74;ReadPosRankSum=1.681;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1205,141,0 chrXVI 620227 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=17.90;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1268,141,0 chrXVI 620415 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.09;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1936,213,0 chrXVI 620505 . C A 2067 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.61;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2100,228,0 chrXVI 620644 . G T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.79;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3520,387,0 chrXVI 620773 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.68;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3381,372,0 chrXVI 620821 . G T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.41;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4121,465,0 chrXVI 620863 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=193;Dels=0.00;FS=8.477;HaplotypeScore=15.0903;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.041;QD=22.37;ReadPosRankSum=3.378;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:4,188:193:99:4318,501,0 chrXVI 621037 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.29;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4518,533,0 chrXVI 621160 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.1404;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.61;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3414,387,0 chrXVI 621301 . A T 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.651;QD=22.72;ReadPosRankSum=1.688;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3567,390,0 chrXVI 621305 . T G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.707;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.470;QD=20.53;ReadPosRankSum=1.668;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3346,378,0 chrXVI 621334 . T G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.42;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3349,378,0 chrXVI 621401 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.73;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2914,336,0 chrXVI 621480 . T C 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=3.077;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.420;QD=22.46;ReadPosRankSum=1.680;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2998,351,0 chrXVI 621830 . T C 2196 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=20.91;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2229,255,0 chrXVI 621831 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=21.53;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2272,255,0 chrXVI 621855 . A T 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-0.476;QD=18.72;ReadPosRankSum=1.602;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1531,171,0 chrXVI 621931 . G T 1643 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4148;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=14.04;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1676,189,0 chrXVI 622057 . A G 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=5.492;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=-0.183;QD=15.18;ReadPosRankSum=1.651;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1323,150,0 chrXVI 622071 . A G 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=10.652;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;MQRankSum=-0.132;QD=13.48;ReadPosRankSum=2.391;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1165,138,0 chrXVI 622074 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=13.24;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1132,132,0 chrXVI 622087 . T G 1129 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=11.64;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1162,141,0 chrXVI 622097 . T A 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;MQRankSum=0.874;QD=12.95;ReadPosRankSum=1.699;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1393,156,0 chrXVI 622243 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=21.88;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2659,300,0 chrXVI 622365 . G C 2328 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=19.24;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2361,276,0 chrXVI 622376 . A C 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=112;Dels=0.00;FS=9.633;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;MQRankSum=-0.396;QD=18.51;ReadPosRankSum=2.901;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2106,237,0 chrXVI 622409 . G T 1606 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=16.91;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1639,180,0 chrXVI 622429 . A G 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;MQRankSum=-0.713;QD=13.93;ReadPosRankSum=1.681;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:994,117,0 chrXVI 622441 . T C 1012 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.9234;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=15.33;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1045,120,0 chrXVI 622481 . A G 1727 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=20.32;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1760,201,0 chrXVI 622577 . A C 1297 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=3;QD=17.77;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1330,153,0 chrXVI 622585 . G A 1152 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=3;QD=18.00;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1185,132,0 chrXVI 622687 . A T 562 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=8.52;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:66:595,66,0 chrXVI 622693 . T C 648 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=9.53;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:75:681,75,0 chrXVI 622781 . G C 2314 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=24.62;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2347,261,0 chrXVI 622904 . T A 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=181;Dels=0.00;FS=5.277;HaplotypeScore=8.1226;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.517;QD=21.49;ReadPosRankSum=2.595;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3890,450,0 chrXVI 622932 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.4486;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-1.499;QD=22.26;ReadPosRankSum=1.635;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3963,450,0 chrXVI 623041 . T G 2849 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.58;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2882,330,0 chrXVI 623043 . T C 2718 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.99;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2751,315,0 chrXVI 623045 . C T 2812 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.99;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2845,315,0 chrXVI 623051 . A C 2936 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=1.244;QD=20.68;ReadPosRankSum=1.708;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2969,351,0 chrXVI 623258 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.06;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1501,168,0 chrXVI 623271 . T A 1545 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.06;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1578,180,0 chrXVI 623671 . A C 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.435;QD=22.50;ReadPosRankSum=1.668;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3712,429,0 chrXVI 624238 . G C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.66;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3618,414,0 chrXVI 624374 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.94;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2424,267,0 chrXVI 624388 . A T 2445 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.26;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2478,267,0 chrXVI 624655 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.353;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.657;QD=23.92;ReadPosRankSum=1.708;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3469,396,0 chrXVI 624739 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.59;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4524,501,0 chrXVI 624811 . G C 5102.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5102,605,0 chrXVI 624882 . C G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.2356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3264,372,0 chrXVI 625038 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.7490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3538,387,0 chrXVI 625108 . C A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3909,444,0 chrXVI 625414 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.27;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:89:99:1748,198,0 chrXVI 626098 . A T 3038 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.95;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3071,345,0 chrXVI 626230 . T C 3116 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3149,357,0 chrXVI 626374 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.93;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3589,393,0 chrXVI 626923 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.82;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3731,423,0 chrXVI 627088 . C T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.15;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4057,447,0 chrXVI 627121 . C A 2923 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.49;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2956,336,0 chrXVI 627235 . A G 2836 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=21.16;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2869,327,0 chrXVI 627237 . A T 2893 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=22.25;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2926,333,0 chrXVI 627340 . T A 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.927;QD=22.43;ReadPosRankSum=1.708;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3218,360,0 chrXVI 627372 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=20.87;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2558,288,0 chrXVI 627414 . A T 1596 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=119;Dels=0.00;FS=14.333;HaplotypeScore=3.8974;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;MQRankSum=-2.381;QD=13.41;ReadPosRankSum=3.236;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:4,115:119:99:1629,186,0 chrXVI 627415 . T A 1576 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.623;DP=119;Dels=0.00;FS=7.684;HaplotypeScore=4.6861;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;MQRankSum=-1.543;QD=13.24;ReadPosRankSum=3.702;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:5,114:119:99:1609,183,0 chrXVI 627421 . G A 1549 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=13.83;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1582,177,0 chrXVI 627426 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=12.76;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1449,165,0 chrXVI 627437 . A T 1504 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=14.19;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1537,171,0 chrXVI 627439 . C T 1469 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=13.86;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1502,171,0 chrXVI 627508 . T G 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.452;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.615;QD=15.90;ReadPosRankSum=1.704;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2005,231,0 chrXVI 627514 . C A 2149 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=17.33;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2182,243,0 chrXVI 627537 . C G 2164 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=15.80;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2197,261,0 chrXVI 627833 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.55;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4397,498,0 chrXVI 627846 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.56;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4362,480,0 chrXVI 627863 . A G 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=218;Dels=0.00;FS=11.034;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-1.995;QD=18.45;ReadPosRankSum=2.393;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:4023,462,0 chrXVI 628026 . A G 5569.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=18.3117;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.01;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5569,636,0 chrXVI 628176 . T C 5226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=251;Dels=0.00;FS=3.028;HaplotypeScore=5.7193;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.324;QD=20.82;ReadPosRankSum=1.691;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5226,600,0 chrXVI 628182 . G A 4932.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.05;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4932,537,0 chrXVI 628338 . A C 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=185;Dels=0.00;FS=26.498;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=1.694;QD=18.15;ReadPosRankSum=3.297;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:4,180:185:99:3358,390,0 chrXVI 628342 . C A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.03;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.48;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3419,381,0 chrXVI 628959 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.23;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3986,453,0 chrXVI 629435 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.705;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.0256;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.272;QD=21.22;ReadPosRankSum=-0.487;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3607,376,0 chrXVI 629487 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.8445;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.12;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4346,471,0 chrXVI 629640 . G C 3465.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.41;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3465,393,0 chrXVI 629691 . T C 3038 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.37;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3071,357,0 chrXVI 629722 . A C 2879 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.86;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2912,336,0 chrXVI 630417 . C T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.94;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4387,507,0 chrXVI 630596 . G T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4237,468,0 chrXVI 630684 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=20.9581;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.75;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4002,447,0 chrXVI 631631 . A C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.716;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.645;QD=22.35;ReadPosRankSum=1.710;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3621,420,0 chrXVI 631842 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=163;Dels=0.00;FS=3.556;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.828;QD=21.52;ReadPosRankSum=-1.302;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3508,375,0 chrXVI 631858 . G C 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.137;QD=20.27;ReadPosRankSum=1.647;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3364,384,0 chrXVI 632145 . A G 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=173;Dels=0.00;FS=4.251;HaplotypeScore=18.2848;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.130;QD=22.83;ReadPosRankSum=1.712;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3949,450,0 chrXVI 633516 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.31;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2391,264,0 chrXVI 633533 . C T 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=97;Dels=0.00;FS=4.070;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.304;QD=22.78;ReadPosRankSum=-0.125;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2243,228,0 chrXVI 634010 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=2.775;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.253;QD=23.14;ReadPosRankSum=2.353;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2393,267,0 chrXVI 634106 . C T 2006 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2039,228,0 chrXVI 634225 . T A 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.612;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.202;QD=23.62;ReadPosRankSum=1.691;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2041,222,0 chrXVI 635040 . C A 5530.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.9244;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.33;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5530,627,0 chrXVI 635151 . C A 5085.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.4416;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.11;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5085,558,0 chrXVI 635562 . G A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.8761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3931,444,0 chrXVI 635876 . T C 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=201;Dels=0.00;FS=8.283;HaplotypeScore=12.5358;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.798;QD=21.66;ReadPosRankSum=3.381;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:4,196:201:99:4353,501,0 chrXVI 636045 . C T 5190.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.57;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5190,582,0 chrXVI 636312 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.325;QD=21.90;ReadPosRankSum=1.714;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4249,483,0 chrXVI 636736 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.728;DP=163;Dels=0.00;FS=23.194;HaplotypeScore=12.2255;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.513;QD=23.46;ReadPosRankSum=3.738;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:5,157:163:99:3824,444,0 chrXVI 637276 . T A 1928 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=11.4310;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.19;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1961,222,0 chrXVI 638483 . G A 4682.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.30;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4682,531,0 chrXVI 638684 . C T 4944.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.78;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4944,558,0 chrXVI 638780 . A G 4902.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=13.1196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:4902,578,0 chrXVI 638861 . C T 5512.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.96;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5512,630,0 chrXVI 638918 . A G 4743.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.06;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4743,540,0 chrXVI 638923 . T C 4600.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.44;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4600,525,0 chrXVI 639081 . T A 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=6.569;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.243;QD=20.53;ReadPosRankSum=1.673;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3634,402,0 chrXVI 639173 . A T 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=109;Dels=0.00;FS=2.667;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.185;QD=21.57;ReadPosRankSum=0.395;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2384,270,0 chrXVI 639417 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.02;FS=6.144;HaplotypeScore=48.3873;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.125;QD=19.40;ReadPosRankSum=2.229;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3511,393,0 chrXVI 639423 . C G 3434.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=9.4802;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.97;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3434,384,0 chrXVI 639626 . C T 4310.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.68;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4310,474,0 chrXVI 639648 . G A 4781.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.8400;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.10;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4781,528,0 chrXVI 639980 . T C 6628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=328;Dels=0.00;FS=5.331;HaplotypeScore=25.6607;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.911;QD=20.21;ReadPosRankSum=2.591;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:3,323:328:99:6628,762,0 chrXVI 640119 . C G 6150.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=17.9643;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.73;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,277:283:99:6150,708,0 chrXVI 640589 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=20.4254;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.70;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3447,425,0 chrXVI 640976 . C A 4497.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.2594;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.41;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4497,501,0 chrXVI 641225 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.054;QD=22.22;ReadPosRankSum=1.651;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2877,339,0 chrXVI 641294 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.94;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1898,231,0 chrXVI 641549 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=5.3773;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=16.17;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2135,234,0 chrXVI 641552 . C A 2082 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3040;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=15.31;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2115,234,0 chrXVI 641895 . G T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.93;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3664,402,0 chrXVI 642071 . T A 1316 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1349,153,0 chrXVI 642171 . C T 526 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.04;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:63:559,63,0 chrXVI 642177 . T A 464 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=21.09;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:57:497,57,0 chrXVI 642462 . C T 5676.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.7290;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.43;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5676,624,0 chrXVI 642603 . A G 6114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=26.7750;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.331;QD=20.80;ReadPosRankSum=1.650;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6114,696,0 chrXVI 642789 . C T 6831.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=18.2236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-3.651e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:6831,771,0 chrXVI 643551 . T A 555 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=24.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:66:588,66,0 chrXVI 643790 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=5.475;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-1.487;QD=14.43;ReadPosRankSum=1.705;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,126:128:99:1880,216,0 chrXVI 643795 . A C 1956 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=15.52;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1989,231,0 chrXVI 644568 . C T 5314.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=17.5129;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.98;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5314,618,0 chrXVI 644801 . A G 6580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=302;Dels=0.00;FS=13.033;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.033;QD=21.79;ReadPosRankSum=3.391;SB=-3.604e+03 GT:AD:DP:GQ:PL 1/1:4,295:302:99:6580,770,0 chrXVI 644963 . C T 9211.01 filter AC=2;AF=1.00;AN=2;DP=417;Dels=0.00;FS=0.000;HaplotypeScore=26.5821;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.09;SB=-5.016e+03 GT:AD:DP:GQ:PL 1/1:0,417:417:99:9211,1035,0 chrXVI 645683 . G T 2885 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.76;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2918,327,0 chrXVI 645731 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=161;Dels=0.00;FS=7.415;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.162;QD=20.63;ReadPosRankSum=2.357;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3322,395,0 chrXVI 645899 . C A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=9.6666;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.26;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3536,387,0 chrXVI 645942 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.9225;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.392;QD=21.49;ReadPosRankSum=1.664;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3331,387,0 chrXVI 646173 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=17.98;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2155,237,0 chrXVI 646196 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=15.46;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,95:99:99:1564,171,0 chrXVI 646356 . T C 543 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=16.45;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:33:66:576,66,0 chrXVI 646408 . T G 404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.473;QD=18.36;ReadPosRankSum=1.576;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:51:437,51,0 chrXVI 646670 . T C 6028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=271;Dels=0.00;FS=3.821;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.834;QD=22.24;ReadPosRankSum=1.719;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,269:271:99:6028,693,0 chrXVI 647322 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=3.018;HaplotypeScore=14.8680;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.442;QD=20.87;ReadPosRankSum=2.393;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3673,417,0 chrXVI 647349 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.21;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3381,381,0 chrXVI 647471 . C G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.98;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3721,452,0 chrXVI 647721 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.11;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3913,453,0 chrXVI 647897 . A G 5967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.446;DP=256;Dels=0.00;FS=4.506;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.696;QD=23.31;ReadPosRankSum=1.678;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5967,656,0 chrXVI 647922 . C T 5678.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.71;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5678,615,0 chrXVI 647937 . T C 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=231;Dels=0.00;FS=5.797;HaplotypeScore=11.9087;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.341;QD=19.26;ReadPosRankSum=2.865;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:3,227:231:99:4448,519,0 chrXVI 648123 . A G 5408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=254;Dels=0.00;FS=6.073;HaplotypeScore=25.6781;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.083;QD=21.29;ReadPosRankSum=2.430;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:2,250:254:99:5408,627,0 chrXVI 648168 . G T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.9996;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.58;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4796,543,0 chrXVI 648390 . A T 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6906;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.198;QD=21.85;ReadPosRankSum=1.712;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3823,438,0 chrXVI 648482 . C G 3093 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3122;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.95;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3126,366,0 chrXVI 648637 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.12;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2194,255,0 chrXVI 648799 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.15;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3311,372,0 chrXVI 649375 . G T 5788.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=20.4379;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.52;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:0,279:282:99:5788,642,0 chrXVI 649438 . C T 4564.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.47;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4564,522,0 chrXVI 649447 . G A 4389.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.51;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4389,492,0 chrXVI 649499 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=194;Dels=0.00;FS=3.935;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.745;QD=19.37;ReadPosRankSum=1.642;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:3758,432,0 chrXVI 649597 . G A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.7721;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.03;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4119,450,0 chrXVI 649723 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.59;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4128,456,0 chrXVI 649819 . T C 2478 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.32;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2511,297,0 chrXVI 649916 . G T 2167 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.25;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2200,252,0 chrXVI 650861 . C T 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.433;QD=24.32;ReadPosRankSum=-1.266;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2562,282,0 chrXVI 651044 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=153;Dels=0.00;FS=3.214;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.664;QD=22.29;ReadPosRankSum=1.709;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3411,405,0 chrXVI 651191 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.867;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.465;QD=21.50;ReadPosRankSum=1.706;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2935,348,0 chrXVI 651827 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3794,420,0 chrXVI 651959 . A T 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.821;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.885;QD=23.93;ReadPosRankSum=1.655;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3263,363,0 chrXVI 652093 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.9688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3343,366,0 chrXVI 652186 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.69;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3857,441,0 chrXVI 652661 . C T 5486.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.0801;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.39;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5486,603,0 chrXVI 652763 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.56;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4850,534,0 chrXVI 652898 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3783,449,0 chrXVI 652985 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.5201;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.99;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3936,465,0 chrXVI 653303 . A G 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=218;Dels=0.00;FS=7.810;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.391;QD=21.38;ReadPosRankSum=2.404;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4660,528,0 chrXVI 653426 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4301,477,0 chrXVI 653739 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=21.47;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2481,288,0 chrXVI 653760 . G C 2400 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=20.87;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2433,279,0 chrXVI 653777 . T C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=4.210;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;MQRankSum=-0.747;QD=20.79;ReadPosRankSum=1.643;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2466,285,0 chrXVI 653803 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=16.35;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,117:120:99:1995,231,0 chrXVI 653824 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=16.66;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1966,216,0 chrXVI 653867 . T C 1433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;MQRankSum=-1.291;QD=14.05;ReadPosRankSum=2.257;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1466,165,0 chrXVI 653881 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=13.44;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1337,147,0 chrXVI 653932 . A T 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.612;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;MQRankSum=-0.871;QD=11.39;ReadPosRankSum=3.205;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:4,94:98:99:1149,129,0 chrXVI 653953 . T G 827 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=56.4313;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=9.51;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:860,102,0 chrXVI 653958 . A G 755 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=60.4029;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;QD=9.32;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:93:788,93,0 chrXVI 654370 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8828;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.11;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2841,321,0 chrXVI 654407 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=127;Dels=0.00;FS=5.705;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.262;QD=20.39;ReadPosRankSum=2.945;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2622,294,0 chrXVI 654411 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.61;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2504,282,0 chrXVI 654445 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=4.087;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.775;QD=19.40;ReadPosRankSum=1.704;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2439,279,0 chrXVI 654498 . A C 2547 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.95;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2580,297,0 chrXVI 654661 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.64;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2184,240,0 chrXVI 654757 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.06;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2200,243,0 chrXVI 654906 . A T 155.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.23;SB=-8.181e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:188,21,0 chrXVI 655245 . A G 814 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.61;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:847,105,0 chrXVI 655349 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.29;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2440,276,0 chrXVI 655575 . A C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.669;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.064;QD=21.03;ReadPosRankSum=1.681;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2872,324,0 chrXVI 656010 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.52;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4846,552,0 chrXVI 656060 . T G 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.045;QD=21.71;ReadPosRankSum=1.696;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4233,492,0 chrXVI 656181 . A G 4746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=236;Dels=0.00;FS=3.161;HaplotypeScore=8.0338;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.584;QD=20.11;ReadPosRankSum=1.702;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:4746,554,0 chrXVI 656226 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4317;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.28;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4044,441,0 chrXVI 656532 . G T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.06;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3802,414,0 chrXVI 656562 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.20;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2454,279,0 chrXVI 656563 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.86;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2542,279,0 chrXVI 656605 . T C 2781 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.0563;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=16.96;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2814,324,0 chrXVI 656677 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.4904;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.32;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4643,507,0 chrXVI 656784 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=205;Dels=0.00;FS=3.437;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.323;QD=21.19;ReadPosRankSum=1.681;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4344,521,0 chrXVI 656861 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.32;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3731,414,0 chrXVI 657450 . G T 1832 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=19.08;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1865,207,0 chrXVI 657485 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=5.535;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-0.540;QD=14.20;ReadPosRankSum=1.695;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1354,153,0 chrXVI 657494 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=13.34;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1287,141,0 chrXVI 657502 . A C 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.9621;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;MQRankSum=-1.253;QD=11.90;ReadPosRankSum=1.695;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1152,118,0 chrXVI 657509 . T A 1045 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=11.36;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1078,120,0 chrXVI 657678 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=22.21;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3164,360,0 chrXVI 657714 . C A 3095 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=24.37;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3128,342,0 chrXVI 658289 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=137;Dels=0.00;FS=2.570;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.739;QD=22.20;ReadPosRankSum=2.948;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:3075,351,0 chrXVI 658323 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.61;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2905,324,0 chrXVI 658481 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.80;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2837,315,0 chrXVI 658638 . T G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=149;Dels=0.00;FS=2.974;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.204;QD=20.19;ReadPosRankSum=2.332;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3041,363,0 chrXVI 658683 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.71;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2833,333,0 chrXVI 659254 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=6.761;HaplotypeScore=8.3294;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.255;QD=19.69;ReadPosRankSum=2.367;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3505,402,0 chrXVI 659340 . G A 5264.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.2613;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.81;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5264,585,0 chrXVI 659349 . T C 5261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=259;Dels=0.00;FS=4.030;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.859;QD=20.31;ReadPosRankSum=1.692;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:1,257:259:99:5261,597,0 chrXVI 659394 . C T 5435.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=17.3701;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.36;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5435,618,0 chrXVI 659469 . C G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.79;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3715,426,0 chrXVI 659868 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.99;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3610,408,0 chrXVI 660498 . A G 2152 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.65;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2185,249,0 chrXVI 660697 . C T 1147 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1180,129,0 chrXVI 660982 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.46;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1246,141,0 chrXVI 661094 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.05;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1356,156,0 chrXVI 661245 . A T 2667 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.04;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2700,297,0 chrXVI 661260 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.831;QD=19.98;ReadPosRankSum=1.619;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2510,291,0 chrXVI 661375 . C T 4751.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.24;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4751,522,0 chrXVI 661443 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-1.068;QD=22.62;ReadPosRankSum=1.711;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3800,455,0 chrXVI 661680 . T C 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.714;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.314;QD=22.41;ReadPosRankSum=1.705;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2901,330,0 chrXVI 662132 . A C 2552 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.58;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2585,297,0 chrXVI 662220 . T C 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.0217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.514;QD=21.81;ReadPosRankSum=1.708;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3196,366,0 chrXVI 662624 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3273,354,0 chrXVI 662768 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.9981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2348,270,0 chrXVI 662874 . T C 2508 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2541,288,0 chrXVI 663036 . A G 2507 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2540,291,0 chrXVI 663321 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2360,282,0 chrXVI 663543 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2310,258,0 chrXVI 663663 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2209,261,0 chrXVI 663708 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2194,249,0 chrXVI 664041 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.01;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4202,462,0 chrXVI 664160 . A C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.850;QD=21.83;ReadPosRankSum=1.711;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3623,417,0 chrXVI 664567 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2909,324,0 chrXVI 664678 . T C 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=170;Dels=0.00;FS=3.928;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.196;QD=22.26;ReadPosRankSum=1.670;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3784,435,0 chrXVI 664861 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2921,336,0 chrXVI 665235 . G A 5121.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.3676;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.66;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5121,564,0 chrXVI 665344 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.37;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1873,213,0 chrXVI 665441 . A G 1727 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7860;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=18.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1760,204,0 chrXVI 665472 . T C 1372 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.59;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1405,177,0 chrXVI 665970 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.65;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3593,408,0 chrXVI 666185 . A C 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=3.331;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.534;QD=22.08;ReadPosRankSum=1.683;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4682,543,0 chrXVI 666286 . T C 6275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=297;Dels=0.00;FS=3.162;HaplotypeScore=20.2868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.071;QD=21.13;ReadPosRankSum=1.696;SB=-3.489e+03 GT:AD:DP:GQ:PL 1/1:1,291:297:99:6275,743,0 chrXVI 666333 . C T 5410.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.9501;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.45;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5410,600,0 chrXVI 666483 . A G 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.396;QD=20.17;ReadPosRankSum=1.715;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4196,483,0 chrXVI 666888 . G A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.71;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4017,441,0 chrXVI 666903 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.52;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3878,426,0 chrXVI 666924 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=193;Dels=0.00;FS=2.971;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.006;QD=18.41;ReadPosRankSum=2.373;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3554,414,0 chrXVI 667377 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.95;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3134,354,0 chrXVI 667416 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.08;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3110,351,0 chrXVI 667536 . C G 1722 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.6916;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.13;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1755,207,0 chrXVI 667966 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8001;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.49;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3312,363,0 chrXVI 668032 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.176;QD=21.75;ReadPosRankSum=1.707;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3013,348,0 chrXVI 668392 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.548;QD=20.84;ReadPosRankSum=1.653;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2784,330,0 chrXVI 669691 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.02;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2404,264,0 chrXVI 670096 . A G 2625 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2658,306,0 chrXVI 670534 . A G 2254 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9146;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.49;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2287,273,0 chrXVI 670603 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.72;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3294,378,0 chrXVI 670672 . T C 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.514;QD=23.25;ReadPosRankSum=1.708;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3394,390,0 chrXVI 670807 . A T 2299 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.90;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2332,255,0 chrXVI 670810 . C G 2090 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.90;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2123,246,0 chrXVI 670986 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.33;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2230,252,0 chrXVI 671075 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.06;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2393,267,0 chrXVI 671114 . A G 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=4.771;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.099;QD=24.18;ReadPosRankSum=1.620;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2282,255,0 chrXVI 671194 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.304;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.107;QD=23.76;ReadPosRankSum=-0.920;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3849,436,0 chrXVI 671392 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.63;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3176,348,0 chrXVI 671425 . A G 2889 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8212;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.75;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2922,330,0 chrXVI 671806 . G A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.13;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4006,447,0 chrXVI 671947 . A C 5289.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.51;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5289,600,0 chrXVI 671978 . G A 4649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.617;QD=22.68;ReadPosRankSum=-1.681;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4649,498,0 chrXVI 672182 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.4922;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=21.84;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4062,462,0 chrXVI 672569 . T C 5746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=261;Dels=0.00;FS=2.919;HaplotypeScore=14.4224;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=1.777;QD=22.02;ReadPosRankSum=2.393;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:2,257:261:99:5746,663,0 chrXVI 672668 . C T 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.8906;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.527;QD=23.00;ReadPosRankSum=0.766;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5197,530,0 chrXVI 672779 . G T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=21.23;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4459,495,0 chrXVI 672797 . C T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=20.55;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4438,489,0 chrXVI 672815 . G C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=17.27;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:3609,440,0 chrXVI 672828 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1320;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=18.52;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3575,399,0 chrXVI 672860 . C G 3581.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.01;FS=0.000;HaplotypeScore=10.5607;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.18;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,191:196:99:3581,411,0 chrXVI 672902 . A T 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.169;DP=210;Dels=0.00;FS=7.387;HaplotypeScore=17.1951;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.041;QD=21.65;ReadPosRankSum=2.426;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4547,513,0 chrXVI 672984 . A G 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=179;Dels=0.00;FS=7.262;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.436;QD=23.97;ReadPosRankSum=2.408;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:4290,474,0 chrXVI 672989 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.20;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3996,459,0 chrXVI 673059 . A C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.303;QD=21.87;ReadPosRankSum=1.693;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3892,444,0 chrXVI 673106 . C T 4790.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.3042;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.38;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4790,543,0 chrXVI 673135 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=222;Dels=0.01;FS=0.000;HaplotypeScore=6.0710;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.333;QD=19.07;ReadPosRankSum=1.716;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:4234,483,0 chrXVI 673136 . A T 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.2823;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.219;QD=19.07;ReadPosRankSum=2.558;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:4291,486,0 chrXVI 673223 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.0074;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.52;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4068,465,0 chrXVI 673445 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.92;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3325,372,0 chrXVI 673678 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=136;Dels=0.00;FS=5.765;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.682;QD=20.35;ReadPosRankSum=1.706;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,131:136:99:2800,341,0 chrXVI 673927 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.3984;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.88;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4343,515,0 chrXVI 673978 . C T 4713.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.6754;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.13;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4713,522,0 chrXVI 674215 . C T 5512.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5512,633,0 chrXVI 674290 . A G 6014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.394;QD=21.71;ReadPosRankSum=1.695;SB=-3.413e+03 GT:AD:DP:GQ:PL 1/1:1,276:277:99:6014,687,0 chrXVI 674314 . T C 6335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=288;Dels=0.00;FS=3.293;HaplotypeScore=9.6106;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.787;QD=22.00;ReadPosRankSum=1.708;SB=-3.354e+03 GT:AD:DP:GQ:PL 1/1:1,285:288:99:6335,714,0 chrXVI 674569 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.34;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3044,336,0 chrXVI 674654 . G A 2423 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=15.14;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2456,267,0 chrXVI 674736 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8316;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.80;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2769,315,0 chrXVI 674810 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=21.76;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2644,300,0 chrXVI 674834 . G A 2149 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=21.28;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2182,237,0 chrXVI 674847 . G C 1869 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=19.88;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1902,219,0 chrXVI 674888 . T C 1704 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.93;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1737,195,0 chrXVI 674900 . T C 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=6.520;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.958;QD=18.22;ReadPosRankSum=2.350;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1855,213,0 chrXVI 674984 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.825;HaplotypeScore=6.4818;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.094;QD=21.68;ReadPosRankSum=1.664;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3295,387,0 chrXVI 675011 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.05;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2790,306,0 chrXVI 675019 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=129;Dels=0.00;FS=11.489;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=1.242;QD=19.69;ReadPosRankSum=2.774;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2573,294,0 chrXVI 675074 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=18.19;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1361,150,0 chrXVI 675149 . G T 2392 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.22;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2425,261,0 chrXVI 675380 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.48;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1935,210,0 chrXVI 675659 . T A 1812 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.23;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1845,204,0 chrXVI 675711 . T C 1320 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.64;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1353,153,0 chrXVI 675869 . A C 802 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.65;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:835,93,0 chrXVI 676046 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.49;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2123,234,0 chrXVI 676149 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1965;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.70;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3209,357,0 chrXVI 676361 . A G 4524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=3.030;HaplotypeScore=15.5586;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.100;QD=20.02;ReadPosRankSum=1.655;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4524,542,0 chrXVI 676691 . G C 2707 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2740,309,0 chrXVI 676743 . C T 3187 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.26;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3220,354,0 chrXVI 677025 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2888,321,0 chrXVI 677287 . A G 4770.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.82;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4770,552,0 chrXVI 677647 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.7260;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.49;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3674,408,0 chrXVI 677784 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=22.14;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4030,453,0 chrXVI 677786 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.481;QD=21.61;ReadPosRankSum=1.713;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3933,438,0 chrXVI 677796 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=20.35;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3826,441,0 chrXVI 677836 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.3593;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.070;QD=20.02;ReadPosRankSum=2.406;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:4564,531,0 chrXVI 678266 . G C 3102 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1932;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.82;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3135,375,0 chrXVI 678517 . C T 5786.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=24.73;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5786,639,0 chrXVI 678569 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.61;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3480,411,0 chrXVI 678596 . T C 2934 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=17.46;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2967,345,0 chrXVI 678599 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=17.24;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3032,336,0 chrXVI 678709 . A G 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=10.4686;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;MQRankSum=0.828;QD=16.81;ReadPosRankSum=1.720;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:1,276:281:99:4723,546,0 chrXVI 678816 . G A 4931.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.0913;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.92;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4931,564,0 chrXVI 679094 . T C 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.5641;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.160;QD=21.86;ReadPosRankSum=1.715;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4393,501,0 chrXVI 679154 . G A 870.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.793;DP=216;Dels=0.00;FS=115.022;HaplotypeScore=5.4841;MLEAC=1;MLEAF=0.500;MQ=47.26;MQ0=0;MQRankSum=-4.563;QD=4.03;ReadPosRankSum=-11.001;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:122,94:216:99:900,0,945 chrXVI 679573 . T A 3010 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.20;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3043,342,0 chrXVI 679575 . T A 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.336;QD=21.32;ReadPosRankSum=1.682;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2997,339,0 chrXVI 679597 . A G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.950;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.686;QD=19.52;ReadPosRankSum=1.686;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,148:153:99:3019,348,0 chrXVI 679712 . C T 4271.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.72;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4271,486,0 chrXVI 679897 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.1055;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.50;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4235,459,0 chrXVI 680151 . A G 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=210;Dels=0.00;FS=3.019;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.897;QD=21.65;ReadPosRankSum=2.414;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4547,519,0 chrXVI 680182 . C A 4590.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.7954;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.75;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4590,519,0 chrXVI 680291 . C A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8653;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.11;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4289,492,0 chrXVI 680463 . G A 5316.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.70;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5316,588,0 chrXVI 680553 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=197;Dels=0.00;FS=3.007;HaplotypeScore=7.1463;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.045;QD=19.14;ReadPosRankSum=2.411;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,191:197:99:3771,435,0 chrXVI 680556 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=6.697;HaplotypeScore=3.4764;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.753;QD=19.32;ReadPosRankSum=2.374;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3768,438,0 chrXVI 680637 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.01;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3744,441,0 chrXVI 680750 . C G 2748 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.7149;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.77;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2781,315,0 chrXVI 680822 . T C 1338 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.94;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1371,153,0 chrXVI 680837 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=15.87;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1239,144,0 chrXVI 681023 . A T 205.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.50;SB=-1.089e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:238,27,0 chrXVI 681366 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.356;QD=23.43;ReadPosRankSum=-1.461;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3913,450,0 chrXVI 681398 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=175;Dels=0.00;FS=8.869;HaplotypeScore=8.5952;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.487;QD=22.13;ReadPosRankSum=2.407;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3873,464,0 chrXVI 681443 . G T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1367;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.08;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3970,438,0 chrXVI 681479 . T C 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=202;Dels=0.00;FS=5.239;HaplotypeScore=14.9414;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.533;QD=21.41;ReadPosRankSum=3.417;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:4,198:202:99:4324,495,0 chrXVI 681542 . T C 6054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=16.2496;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.436;QD=20.45;ReadPosRankSum=1.673;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:1,292:296:99:6054,710,0 chrXVI 681719 . A G 5862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=294;Dels=0.00;FS=2.577;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.097;QD=19.94;ReadPosRankSum=2.365;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:2,290:294:99:5862,686,0 chrXVI 681810 . A G 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.266;QD=21.14;ReadPosRankSum=1.682;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4418,516,0 chrXVI 681836 . C T 4646.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.23;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4646,519,0 chrXVI 681914 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=2.984;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.358;QD=23.44;ReadPosRankSum=2.407;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4126,474,0 chrXVI 682109 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.11;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3421,381,0 chrXVI 682384 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.640;DP=123;Dels=0.00;FS=8.079;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.020;QD=20.02;ReadPosRankSum=3.718;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:5,116:123:99:2496,297,0 chrXVI 682729 . C G 2954 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2987,336,0 chrXVI 682840 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.44;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1549,174,0 chrXVI 683025 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;QD=23.65;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3155,357,0 chrXVI 683285 . T C 4593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=214;Dels=0.00;FS=3.304;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-1.538;QD=21.46;ReadPosRankSum=1.651;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4593,531,0 chrXVI 684164 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=4.037;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.048;QD=23.63;ReadPosRankSum=1.687;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3639,417,0 chrXVI 684455 . A C 526 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.79;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:63:559,63,0 chrXVI 685433 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.37;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2248,252,0 chrXVI 685589 . T A 1829 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.88;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1862,204,0 chrXVI 685853 . A G 2583 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.14;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2616,291,0 chrXVI 686122 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.96;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3225,348,0 chrXVI 687687 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.442;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.135;QD=21.55;ReadPosRankSum=0.073;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3642,374,0 chrXVI 687708 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.99;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3298,369,0 chrXVI 687978 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.34;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1890,222,0 chrXVI 688591 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.17;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3335,378,0 chrXVI 688631 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=9.301;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.130;QD=20.67;ReadPosRankSum=2.294;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:2989,333,0 chrXVI 688640 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.01;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2894,318,0 chrXVI 688954 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=165;Dels=0.00;FS=6.431;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.430;QD=22.56;ReadPosRankSum=2.404;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3723,429,0 chrXVI 689427 . A G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.292;DP=63;Dels=0.00;FS=3.680;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=1.292;QD=18.33;ReadPosRankSum=0.962;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1188,122,0 chrXVI 689474 . C T 916 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=21.30;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:949,105,0 chrXVI 689494 . A G 869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;MQRankSum=-1.733;QD=20.21;ReadPosRankSum=1.571;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:902,102,0 chrXVI 689525 . T A 693 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;QD=19.80;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:78:726,78,0 chrXVI 689532 . C T 685 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=18.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:718,78,0 chrXVI 689677 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.35;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3005,342,0 chrXVI 691459 . A C 3278.01 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.87;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3278,381,0 chrXVI 691465 . T C 2984 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=18.65;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3017,348,0 chrXVI 691468 . G A 3027 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=19.91;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3060,336,0 chrXVI 691472 . G C 2831 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=18.62;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2864,330,0 chrXVI 691540 . T C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.327;QD=19.62;ReadPosRankSum=1.699;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2113,237,0 chrXVI 691669 . A G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.493;QD=20.89;ReadPosRankSum=1.692;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1850,219,0 chrXVI 692056 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=178;Dels=0.00;FS=7.728;HaplotypeScore=14.2185;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.894;QD=22.20;ReadPosRankSum=0.520;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3951,465,0 chrXVI 692119 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=174;Dels=0.00;FS=3.028;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.604;QD=21.67;ReadPosRankSum=2.364;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3771,438,0 chrXVI 692167 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.28;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4122,453,0 chrXVI 692440 . T C 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.889;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.293;QD=21.62;ReadPosRankSum=1.708;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3103,351,0 chrXVI 692547 . A G 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.333;QD=21.11;ReadPosRankSum=1.666;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2250,255,0 chrXVI 692741 . A T 1939 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1972,216,0 chrXVI 693047 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.6877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4034,444,0 chrXVI 693567 . T G 5442.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.86;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:5442,621,0 chrXVI 693600 . C T 4627.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.52;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4627,507,0 chrXVI 693603 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=237;Dels=0.00;FS=7.999;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.555;QD=18.73;ReadPosRankSum=3.350;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:4,232:237:99:4438,504,0 chrXVI 693825 . T C 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.338;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.184;QD=22.70;ReadPosRankSum=1.713;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4108,474,0 chrXVI 694413 . C T 6858.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.41;SB=-3.953e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:6858,753,0 chrXVI 694426 . G A 6667.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.90;SB=-4.111e+03 GT:AD:DP:GQ:PL 1/1:0,319:319:99:6667,726,0 chrXVI 694434 . C A 6193.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.17;SB=-3.995e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:6193,684,0 chrXVI 694716 . T C 5840.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=17.7958;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.04;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,261:265:99:5840,680,0 chrXVI 694965 . G T 2784 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.25;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2817,321,0 chrXVI 694969 . G T 2667 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=20.36;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2700,306,0 chrXVI 695201 . A C 1612 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=16.45;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1645,198,0 chrXVI 695202 . A G 1592 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=16.24;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1625,195,0 chrXVI 695213 . A G 1520 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=15.67;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1553,180,0 chrXVI 695230 . C A 1903 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=16.99;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1936,216,0 chrXVI 695351 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=24.37;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3948,432,0 chrXVI 695419 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=24.05;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3295,357,0 chrXVI 695522 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=22.97;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2950,321,0 chrXVI 695527 . T G 2713 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.53;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2746,321,0 chrXVI 695543 . G C 2673 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.05;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2706,306,0 chrXVI 695561 . T C 1996 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.15;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2029,251,0 chrXVI 695653 . C G 1885 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=7.4342;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=1;QD=18.30;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1918,222,0 chrXVI 695738 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.660;QD=22.71;ReadPosRankSum=2.413;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3122,354,0 chrXVI 695836 . T G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.027;QD=22.44;ReadPosRankSum=1.714;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4286,483,0 chrXVI 696046 . T C 6300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=293;Dels=0.00;FS=6.065;HaplotypeScore=14.1483;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.118;QD=21.50;ReadPosRankSum=2.962;SB=-3.484e+03 GT:AD:DP:GQ:PL 1/1:3,287:293:99:6300,732,0 chrXVI 696087 . A G 5553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=292;Dels=0.00;FS=1.905;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.844;QD=19.02;ReadPosRankSum=3.223;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:4,288:292:99:5553,624,0 chrXVI 696088 . G A 5764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=292;Dels=0.00;FS=8.163;HaplotypeScore=5.7510;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.831;QD=19.74;ReadPosRankSum=2.146;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:2,289:292:99:5764,639,0 chrXVI 696232 . A G 5769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=19.5963;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=1.039;QD=21.69;ReadPosRankSum=1.654;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:1,264:266:99:5769,657,0 chrXVI 696288 . G T 5089.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.4310;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.52;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5089,573,0 chrXVI 696313 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=19.44;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4530,501,0 chrXVI 696482 . T C 5301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=259;Dels=0.00;FS=2.888;HaplotypeScore=8.4942;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.014;QD=20.47;ReadPosRankSum=2.421;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:2,254:259:99:5301,618,0 chrXVI 696490 . C T 5468.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.0977;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.33;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5468,615,0 chrXVI 696582 . T C 6620.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=23.07;SB=-3.497e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6620,759,0 chrXVI 696879 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.09;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4294,501,0 chrXVI 696953 . G C 3615.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.74;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3615,426,0 chrXVI 697060 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.64;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3364,366,0 chrXVI 697067 . T C 3207 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.20;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3240,375,0 chrXVI 697775 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.45;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4130,453,0 chrXVI 697864 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=159;Dels=0.00;FS=2.976;HaplotypeScore=10.8236;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.564;QD=20.97;ReadPosRankSum=2.419;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3334,387,0 chrXVI 697918 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.128;QD=19.87;ReadPosRankSum=1.686;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2994,357,0 chrXVI 697945 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8872;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.02;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2996,333,0 chrXVI 698544 . T G 74.45 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=57;Dels=0.04;FS=0.000;HaplotypeScore=21.9742;MLEAC=1;MLEAF=0.500;MQ=39.46;MQ0=0;MQRankSum=-1.920;QD=1.31;ReadPosRankSum=2.333;SB=-7.446e+01 GT:AD:DP:GQ:PL 1/1:2,41:55:12:105,12,0 chrXVI 698565 . A G 615 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=11.39;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:75:648,75,0 chrXVI 698605 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=16.93;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1286,150,0 chrXVI 698632 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=18.17;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1596,183,0 chrXVI 698642 . C G 1580 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.37;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1613,183,0 chrXVI 698725 . A G 2370 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=22.15;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2403,276,0 chrXVI 698851 . G T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.96;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3743,420,0 chrXVI 698946 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.732;QD=20.94;ReadPosRankSum=1.682;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2923,351,0 chrXVI 698959 . T C 2971 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.34;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3004,339,0 chrXVI 699102 . G A 4443.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.90;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4443,483,0 chrXVI 699146 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=19.7923;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.048;QD=21.24;ReadPosRankSum=1.689;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3462,399,0 chrXVI 699198 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.45;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3377,384,0 chrXVI 699223 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.03;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3708,420,0 chrXVI 699663 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=6.763;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.933;QD=21.59;ReadPosRankSum=2.415;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3077,354,0 chrXVI 700042 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2812;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.57;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3611,417,0 chrXVI 700101 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=138;Dels=0.00;FS=10.758;HaplotypeScore=13.6953;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.686;QD=21.07;ReadPosRankSum=2.949;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2941,356,0 chrXVI 700285 . T C 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=5.857;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.799;QD=16.78;ReadPosRankSum=1.599;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1795,201,0 chrXVI 700309 . T G 1927 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.89;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1960,222,0 chrXVI 700480 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=23.38;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2184,243,0 chrXVI 700509 . A G 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=5.528;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=-1.386;QD=19.98;ReadPosRankSum=1.697;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2051,252,0 chrXVI 701427 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=8.15;MQ0=95;MQRankSum=1.380;QD=0.21;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,97:105:6:53,6,0 chrXVI 702403 . C T 4703.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.87;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4703,519,0 chrXVI 702425 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.5134;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.94;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4256,486,0 chrXVI 702489 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.30;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3083,333,0 chrXVI 702492 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.61;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3030,333,0 chrXVI 702578 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=3.914;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.354;QD=19.39;ReadPosRankSum=1.648;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3233,386,0 chrXVI 702662 . G C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.79;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3255,384,0 chrXVI 703030 . T C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.489;QD=21.22;ReadPosRankSum=1.706;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2834,324,0 chrXVI 703259 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.82;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2863,315,0 chrXVI 703359 . T C 2777 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.20;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2810,321,0 chrXVI 703434 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.973;QD=22.61;ReadPosRankSum=1.661;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3301,378,0 chrXVI 703815 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.76;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3916,444,0 chrXVI 703890 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.33;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,148:153:99:3144,348,0 chrXVI 704140 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.55;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3260,354,0 chrXVI 704149 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=3.037;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.328;QD=18.60;ReadPosRankSum=2.373;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3028,345,0 chrXVI 704396 . G C 5190.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.63;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5190,582,0 chrXVI 705129 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4061,450,0 chrXVI 705247 . G A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4455,504,0 chrXVI 705306 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=161;Dels=0.00;FS=6.382;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.127;QD=22.87;ReadPosRankSum=2.373;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3682,423,0 chrXVI 705875 . A G 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=5.421;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.241;QD=23.58;ReadPosRankSum=1.700;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5116,573,0 chrXVI 705963 . A G 6505.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.35;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,288:291:99:6505,788,0 chrXVI 706053 . G A 6226.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=14.6865;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.49;SB=-3.222e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6226,681,0 chrXVI 706407 . G A 6214.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=16.0131;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.65;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6214,693,0 chrXVI 706474 . C A 5180.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.58;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5180,567,0 chrXVI 706545 . G A 4562.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.6082;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.83;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4562,501,0 chrXVI 706637 . G A 4611.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.85;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4611,507,0 chrXVI 706852 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.837;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.162;QD=22.72;ReadPosRankSum=1.686;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3431,399,0 chrXVI 707059 . C A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3489,387,0 chrXVI 707392 . A C 3116 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.3947;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.12;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3149,366,0 chrXVI 707414 . T G 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.292;QD=21.66;ReadPosRankSum=1.713;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3878,441,0 chrXVI 707520 . C T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.67;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4356,489,0 chrXVI 707772 . C A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.44;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4174,462,0 chrXVI 707796 . T A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.14;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4051,459,0 chrXVI 708162 . G T 2839 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.35;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2872,318,0 chrXVI 708208 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.12;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2423,273,0 chrXVI 708230 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.78;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2672,294,0 chrXVI 708362 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.86;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1656,183,0 chrXVI 708478 . A C 1399 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=18.91;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1432,171,0 chrXVI 708483 . A T 1465 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=19.53;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1498,168,0 chrXVI 708490 . A C 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.986;DP=86;Dels=0.00;FS=2.700;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=-1.725;QD=16.01;ReadPosRankSum=1.812;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1410,162,0 chrXVI 708556 . T C 2941 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.28;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2974,336,0 chrXVI 708674 . G C 1596 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.98;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1629,186,0 chrXVI 708680 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.96;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1475,168,0 chrXVI 708887 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=170;Dels=0.00;FS=7.517;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.016;QD=21.62;ReadPosRankSum=2.347;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3676,440,0 chrXVI 708937 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.04;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2852,315,0 chrXVI 708998 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=128;Dels=0.00;FS=4.102;HaplotypeScore=5.9160;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.550;QD=19.96;ReadPosRankSum=1.677;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2588,303,0 chrXVI 709031 . C G 3300.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3300,372,0 chrXVI 709506 . A C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=4.017;HaplotypeScore=11.8442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.856;QD=22.60;ReadPosRankSum=1.712;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3955,462,0 chrXVI 709892 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.53;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3279,392,0 chrXVI 709966 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.88;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2777,309,0 chrXVI 709987 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=126;Dels=0.00;FS=10.698;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.272;QD=20.11;ReadPosRankSum=2.912;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2567,297,0 chrXVI 710043 . T C 2899 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.3317;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.32;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2932,333,0 chrXVI 710154 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.30;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2865,327,0 chrXVI 710484 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=185;Dels=0.00;FS=3.028;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.113;QD=19.61;ReadPosRankSum=2.423;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3628,429,0 chrXVI 710553 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.69;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3091,339,0 chrXVI 710988 . G A 4746.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.15;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4746,525,0 chrXVI 711099 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.003;QD=20.54;ReadPosRankSum=1.696;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1984,231,0 chrXVI 711113 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.93;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1985,228,0 chrXVI 711248 . A T 1422 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.91;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1455,162,0 chrXVI 711390 . C A 2038 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.87;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,103:108:99:2071,240,0 chrXVI 711619 . C G 5538.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.4300;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.89;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5538,639,0 chrXVI 711691 . T A 5637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=267;Dels=0.00;FS=13.976;HaplotypeScore=11.7608;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.620;QD=21.11;ReadPosRankSum=2.951;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:5637,621,0 chrXVI 712507 . A T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3730,411,0 chrXVI 713201 . C T 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=173;Dels=0.00;FS=3.014;HaplotypeScore=14.4972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.929;QD=23.23;ReadPosRankSum=0.470;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,168:173:99:4018,444,0 chrXVI 713880 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.015;QD=23.50;ReadPosRankSum=2.420;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3878,438,0 chrXVI 713959 . C G 2611 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.40;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2644,315,0 chrXVI 714342 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.89;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3163,357,0 chrXVI 714603 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=120;Dels=0.00;FS=14.537;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.277;QD=21.79;ReadPosRankSum=2.858;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2648,306,0 chrXVI 714698 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.39;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2592,282,0 chrXVI 714703 . G C 2342 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.09;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2375,276,0 chrXVI 714728 . A G 2020 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=16.42;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2053,237,0 chrXVI 714942 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=23.68;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3230,354,0 chrXVI 715017 . T A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.84;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3462,381,0 chrXVI 715923 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.61;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2367,267,0 chrXVI 716297 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.43;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1536,174,0 chrXVI 716554 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.58;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3107,348,0 chrXVI 716555 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.23;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3052,348,0 chrXVI 716627 . A G 2839 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=18.32;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2872,333,0 chrXVI 716666 . T C 3006 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.27;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3039,348,0 chrXVI 716753 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.03;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3197,366,0 chrXVI 716879 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=4.661;HaplotypeScore=8.8892;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.620;QD=21.85;ReadPosRankSum=1.710;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3409,390,0 chrXVI 717039 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6387;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.65;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3048,336,0 chrXVI 717249 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.19;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2162,240,0 chrXVI 717292 . T C 2138 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.38;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2171,246,0 chrXVI 717332 . C A 1932 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.47;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1965,225,0 chrXVI 717350 . T C 1801 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.94;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1834,207,0 chrXVI 717476 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=4.043;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.063;QD=22.19;ReadPosRankSum=1.631;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3073,351,0 chrXVI 717896 . A T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3665,405,0 chrXVI 717952 . G T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3628,393,0 chrXVI 718160 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2114,237,0 chrXVI 718224 . T C 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.510;QD=22.91;ReadPosRankSum=1.700;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2530,288,0 chrXVI 718261 . G C 2626 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2659,306,0 chrXVI 718602 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8588;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.62;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2838,321,0 chrXVI 718667 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=22.83;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2841,315,0 chrXVI 718963 . T A 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.882;QD=17.89;ReadPosRankSum=1.606;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2019,219,0 chrXVI 718964 . T A 1970 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.24;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2003,219,0 chrXVI 719293 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.74;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2557,282,0 chrXVI 719387 . T C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.336;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=1.696;QD=21.10;ReadPosRankSum=1.625;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2080,237,0 chrXVI 719431 . C T 200.01 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=2.00;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:27:233,27,0 chrXVI 719432 . T A 305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=95;Dels=0.00;FS=6.148;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-1.969;QD=3.21;ReadPosRankSum=2.586;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,92:95:39:338,39,0 chrXVI 719631 . T G 6848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=4.1919;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.370;QD=22.68;ReadPosRankSum=2.393;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,300:302:99:6848,759,0 chrXVI 719633 . A G 5978.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=4.9823;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.73;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:5978,704,0 chrXVI 719766 . T C 10290.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=516;Dels=0.00;FS=3.014;HaplotypeScore=12.5992;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.802;QD=19.94;ReadPosRankSum=2.388;SB=-6.359e+03 GT:AD:DP:GQ:PL 1/1:2,513:516:99:10290,1179,0 chrXVI 719789 . T G 10330.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=521;Dels=0.00;FS=6.563;HaplotypeScore=7.2013;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.960;QD=19.83;ReadPosRankSum=1.809;SB=-6.410e+03 GT:AD:DP:GQ:PL 1/1:2,519:521:99:10330,1167,0 chrXVI 719858 . G A 7959.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=16.5057;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.75;SB=-3.931e+03 GT:AD:DP:GQ:PL 1/1:0,365:366:99:7959,903,0 chrXVI 719992 . C G 6369.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=23.2083;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.79;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,337:339:99:6369,738,0 chrXVI 720047 . G A 5506.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=19.8013;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.76;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5506,618,0 chrXVI 720134 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.39;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3671,402,0 chrXVI 720275 . T C 3093 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.25;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3126,357,0 chrXVI 720323 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.02;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2575,282,0 chrXVI 720335 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.20;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2498,276,0 chrXVI 720353 . C G 1932 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.76;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1965,219,0 chrXVI 720561 . C A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.82;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3478,378,0 chrXVI 720720 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.19;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3942,441,0 chrXVI 720834 . A T 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.371;QD=22.62;ReadPosRankSum=1.670;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1300,144,0 chrXVI 721093 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.85;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3578,405,0 chrXVI 722078 . C G 2375 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.20;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2408,282,0 chrXVI 722172 . G C 1214 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.90;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1247,141,0 chrXVI 722416 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.20;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2098,231,0 chrXVI 722483 . A G 3038 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.18;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3071,360,0 chrXVI 722572 . T A 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=4.157;HaplotypeScore=7.8847;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.677;QD=21.30;ReadPosRankSum=1.012;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2696,297,0 chrXVI 722849 . C G 3072 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.76;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3105,360,0 chrXVI 723074 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.03;FS=0.000;HaplotypeScore=5.6441;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.49;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2612,285,0 chrXVI 723284 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.94;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2713,297,0 chrXVI 723296 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.284;QD=19.98;ReadPosRankSum=1.706;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2730,306,0 chrXVI 723524 . A G 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=7.436;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.997;QD=21.40;ReadPosRankSum=2.411;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4087,468,0 chrXVI 723602 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=155;Dels=0.01;FS=3.155;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.102;QD=20.72;ReadPosRankSum=1.664;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3244,392,0 chrXVI 723709 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.8559;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.94;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3708,408,0 chrXVI 724013 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.238;QD=18.75;ReadPosRankSum=-0.736;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3052,339,0 chrXVI 724121 . A G 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=158;Dels=0.00;FS=2.586;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.382;QD=20.04;ReadPosRankSum=2.905;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3199,360,0 chrXVI 724232 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.20;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2640,300,0 chrXVI 724286 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.6035;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.80;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3808,417,0 chrXVI 724568 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4566,522,0 chrXVI 724951 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.242;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=1.035;QD=20.83;ReadPosRankSum=1.710;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3241,384,0 chrXVI 725136 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=21.15;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3680,405,0 chrXVI 725138 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=141.8989;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=21.06;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3685,399,0 chrXVI 725262 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.1627;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=21.28;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3341,366,0 chrXVI 725275 . A G 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=6.426;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=-0.618;QD=18.76;ReadPosRankSum=2.420;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3128,360,0 chrXVI 725291 . T A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3264;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=19.41;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3255,360,0 chrXVI 725308 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=16.27;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2539,282,0 chrXVI 725310 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;MQRankSum=-1.285;QD=15.57;ReadPosRankSum=1.687;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:2478,282,0 chrXVI 725336 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=147;Dels=0.00;FS=2.824;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;MQRankSum=-1.497;QD=17.44;ReadPosRankSum=2.366;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2596,303,0 chrXVI 725435 . A G 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.174;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.791;QD=22.65;ReadPosRankSum=1.711;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3669,411,0 chrXVI 725441 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.60;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3842,417,0 chrXVI 725567 . C A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.80;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3474,381,0 chrXVI 725570 . T A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.21;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3458,381,0 chrXVI 725777 . A G 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6831;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.815;QD=21.98;ReadPosRankSum=1.707;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3044,351,0 chrXVI 726081 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3599,417,0 chrXVI 726358 . G A 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.467;QD=22.08;ReadPosRankSum=0.632;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2815,309,0 chrXVI 726480 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=129;Dels=0.00;FS=9.135;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.677;QD=20.18;ReadPosRankSum=2.866;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2636,303,0 chrXVI 726638 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.94;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2946,333,0 chrXVI 726715 . A G 2837 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2870,327,0 chrXVI 727099 . T G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=2.971;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.341;QD=23.22;ReadPosRankSum=2.409;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2866,321,0 chrXVI 727505 . T C 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.237;QD=21.66;ReadPosRankSum=1.701;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2481,285,0 chrXVI 727667 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3434,375,0 chrXVI 727851 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.69;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4359,495,0 chrXVI 728174 . C T 2007 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2032;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.61;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2040,228,0 chrXVI 728255 . T C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=112;Dels=0.00;FS=2.718;HaplotypeScore=9.6203;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.499;QD=22.43;ReadPosRankSum=2.405;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2545,297,0 chrXVI 728329 . A G 1970 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.52;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2003,228,0 chrXVI 728333 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.70;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1944,219,0 chrXVI 728378 . C A 1658 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.22;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1691,186,0 chrXVI 728630 . C G 944 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=240.9157;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=17.16;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:977,114,0 chrXVI 728690 . C T 704 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=14.67;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:737,81,0 chrXVI 728725 . A G 779 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.12;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:812,93,0 chrXVI 728832 . A T 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=0.718;QD=22.15;ReadPosRankSum=1.310;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:941,102,0 chrXVI 729067 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.453;QD=24.01;ReadPosRankSum=1.701;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2722,312,0 chrXVI 729159 . A G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=146;Dels=0.00;FS=7.280;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.365;QD=21.79;ReadPosRankSum=2.365;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3214,363,0 chrXVI 729296 . T A 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=128;Dels=0.00;FS=4.737;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.135;QD=20.45;ReadPosRankSum=1.597;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2650,291,0 chrXVI 729469 . A T 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=7.827;HaplotypeScore=7.3125;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-2.022;QD=22.10;ReadPosRankSum=2.236;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2574,291,0 chrXVI 729729 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3100,351,0 chrXVI 730141 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2309,255,0 chrXVI 730213 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1633,180,0 chrXVI 730292 . T C 1696 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.61;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1729,201,0 chrXVI 730436 . T A 1613 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.72;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1646,180,0 chrXVI 730469 . A G 2330 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.9070;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.62;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2363,273,0 chrXVI 730534 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=18.82;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2254,258,0 chrXVI 730551 . A T 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.100;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.530;QD=20.64;ReadPosRankSum=1.591;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2056,231,0 chrXVI 730935 . T G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.013;QD=22.31;ReadPosRankSum=1.652;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2956,336,0 chrXVI 731036 . T C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=4.007;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-1.732;QD=19.55;ReadPosRankSum=1.688;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1597,180,0 chrXVI 731037 . A C 1593 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.16;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1626,186,0 chrXVI 731859 . T C 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=101;Dels=0.00;FS=5.603;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.690;QD=21.35;ReadPosRankSum=2.911;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2189,255,0 chrXVI 732035 . T C 2917 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.34;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2950,345,0 chrXVI 732114 . C A 2280 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.83;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2313,255,0 chrXVI 732115 . T G 2152 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.71;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2185,249,0 chrXVI 732154 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.31;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2389,264,0 chrXVI 732711 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=175;Dels=0.00;FS=3.163;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.613;QD=21.53;ReadPosRankSum=1.692;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3768,447,0 chrXVI 732750 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=163;Dels=0.00;FS=12.533;HaplotypeScore=11.7325;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.327;QD=21.38;ReadPosRankSum=3.363;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3485,408,0 chrXVI 732897 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.2524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4183,465,0 chrXVI 733137 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2753,303,0 chrXVI 733425 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:997,108,0 chrXVI 733467 . T C 676 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.48;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:84:709,84,0 chrXVI 733512 . A G 906 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.49;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:939,105,0 chrXVI 733513 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.79;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:935,102,0 chrXVI 733636 . T C 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.496;QD=21.07;ReadPosRankSum=1.693;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1887,216,0 chrXVI 734031 . T C 4689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=245;Dels=0.00;FS=4.380;HaplotypeScore=8.1023;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-1.122;QD=19.14;ReadPosRankSum=1.675;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:4689,540,0 chrXVI 734051 . A T 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.486;QD=18.06;ReadPosRankSum=2.404;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:2,268:270:99:4875,552,0 chrXVI 734148 . T A 4742.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=25.7926;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.55;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4742,519,0 chrXVI 734183 . G T 4383.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.2178;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.71;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4383,489,0 chrXVI 734298 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9306;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=1;QD=19.46;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3405,381,0 chrXVI 734343 . G C 3884.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.94;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3884,450,0 chrXVI 734520 . C G 3995.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.59;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3995,459,0 chrXVI 734868 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.7214;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.10;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2928,324,0 chrXVI 735090 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2481,294,0 chrXVI 735447 . G T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=17.0575;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.24;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3649,402,0 chrXVI 735801 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=186;Dels=0.00;FS=14.532;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.732;QD=21.31;ReadPosRankSum=3.413;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:4,181:186:99:3964,453,0 chrXVI 735864 . G T 3171 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.70;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3204,351,0 chrXVI 735865 . G T 3138 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=19.99;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3171,351,0 chrXVI 735901 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.8139;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.92;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2707,297,0 chrXVI 735908 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=16.88;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2632,291,0 chrXVI 736014 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.66;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3513,399,0 chrXVI 736356 . A T 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.589;QD=20.37;ReadPosRankSum=1.646;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2498,276,0 chrXVI 736410 . T C 2417 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.9055;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.39;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2450,282,0 chrXVI 736455 . A G 2645 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.23;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2678,306,0 chrXVI 736469 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=5.570;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.539;QD=22.41;ReadPosRankSum=1.703;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2722,306,0 chrXVI 736702 . A G 1503 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.78;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1536,174,0 chrXVI 736718 . C G 1237 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=19.03;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1270,147,0 chrXVI 736723 . C G 1178 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=18.41;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1211,138,0 chrXVI 736854 . G C 2647 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2680,303,0 chrXVI 736980 . A T 3085 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.20;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3118,345,0 chrXVI 737218 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.65;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3659,405,0 chrXVI 737739 . A G 2745 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.26;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2778,318,0 chrXVI 737761 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.04;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2613,297,0 chrXVI 737976 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.95;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1833,204,0 chrXVI 738241 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=4.156;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.151;QD=22.41;ReadPosRankSum=1.707;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3148,360,0 chrXVI 738306 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=171;Dels=0.00;FS=3.194;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.461;QD=23.13;ReadPosRankSum=1.712;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3956,450,0 chrXVI 738527 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.452;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.039;QD=20.99;ReadPosRankSum=1.710;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3295,375,0 chrXVI 738601 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.40;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2259,252,0 chrXVI 738727 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=134;Dels=0.00;FS=2.941;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.539;QD=21.51;ReadPosRankSum=2.336;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,128:134:99:2915,330,0 chrXVI 738757 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.56;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2673,300,0 chrXVI 739009 . A G 2793 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.48;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2826,324,0 chrXVI 739133 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.62;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4094,462,0 chrXVI 739339 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.69;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3861,438,0 chrXVI 739738 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.75;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3412,372,0 chrXVI 739829 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.33;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3919,429,0 chrXVI 739882 . A G 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=3.580;HaplotypeScore=10.2227;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.677;QD=23.70;ReadPosRankSum=1.639;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4431,501,0 chrXVI 740090 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.30;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3748,432,0 chrXVI 740140 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.80;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3374,372,0 chrXVI 740246 . A C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=2.942;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.010;QD=19.27;ReadPosRankSum=2.370;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2403,285,0 chrXVI 740267 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.56;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2302,258,0 chrXVI 740348 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.13;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1919,222,0 chrXVI 740362 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.50;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2237,249,0 chrXVI 740531 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.80;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3989,485,0 chrXVI 740554 . G A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.11;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4485,489,0 chrXVI 741098 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.48;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2865,315,0 chrXVI 741253 . A G 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.453;DP=117;Dels=0.00;FS=5.413;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.009;QD=21.26;ReadPosRankSum=2.940;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2521,266,0 chrXVI 741341 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=4.733;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.996;QD=19.46;ReadPosRankSum=1.701;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2232,258,0 chrXVI 741347 . T G 2118 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.74;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2151,249,0 chrXVI 741972 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.293;HaplotypeScore=10.5741;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.114;QD=19.99;ReadPosRankSum=1.705;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2632,297,0 chrXVI 742069 . T A 2274 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5839;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.51;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2307,255,0 chrXVI 742149 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.32;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1821,207,0 chrXVI 742152 . A C 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.990;QD=20.29;ReadPosRankSum=1.650;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1737,198,0 chrXVI 742176 . A G 1402 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.21;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1435,165,0 chrXVI 742296 . T A 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.191;DP=127;Dels=0.00;FS=3.216;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.436;QD=22.20;ReadPosRankSum=2.082;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2852,333,0 chrXVI 742684 . T A 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=101;Dels=0.00;FS=2.981;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.646;QD=22.55;ReadPosRankSum=2.377;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2311,258,0 chrXVI 743518 . C T 4222.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.7756;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.46;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4222,465,0 chrXVI 743659 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.42;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4051,462,0 chrXVI 743731 . A T 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.467;QD=22.63;ReadPosRankSum=1.713;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4029,447,0 chrXVI 743734 . T C 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=5.018;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.411;QD=21.60;ReadPosRankSum=1.713;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3909,444,0 chrXVI 743816 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.11;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3837,423,0 chrXVI 743956 . G T 2547 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.58;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2580,282,0 chrXVI 743973 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.22;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2522,285,0 chrXVI 744067 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=22.87;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2640,297,0 chrXVI 744256 . T A 1711 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=21.39;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1744,192,0 chrXVI 744368 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.97;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1503,174,0 chrXVI 744403 . A C 1157 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=16.77;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1190,138,0 chrXVI 744410 . A C 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=78;Dels=0.00;FS=8.016;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=0.456;QD=15.54;ReadPosRankSum=1.687;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1245,144,0 chrXVI 744451 . A T 1881 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=16.95;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1914,219,0 chrXVI 744459 . A G 1843 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=15.23;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1876,216,0 chrXVI 744462 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=15.90;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2020,222,0 chrXVI 744531 . A G 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=5.278;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=0.587;QD=19.27;ReadPosRankSum=1.703;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2345,282,0 chrXVI 744598 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.63;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2727,303,0 chrXVI 744781 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2447;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.47;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2740,312,0 chrXVI 744800 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.24;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3191,348,0 chrXVI 744935 . C A 2806 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.75;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2839,315,0 chrXVI 745157 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.73;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3162,354,0 chrXVI 745381 . T A 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=173;Dels=0.00;FS=7.650;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.285;QD=22.60;ReadPosRankSum=2.379;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3910,432,0 chrXVI 745441 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.318;QD=21.97;ReadPosRankSum=1.661;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3273,378,0 chrXVI 745578 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.845;QD=22.18;ReadPosRankSum=1.677;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2806,327,0 chrXVI 745623 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.27;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2436,276,0 chrXVI 745697 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.17;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1938,219,0 chrXVI 745701 . T C 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=3.854;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.917;QD=21.53;ReadPosRankSum=1.610;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1906,216,0 chrXVI 745769 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.70;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1668,183,0 chrXVI 745879 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.79;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2460,270,0 chrXVI 746299 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.22;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3599,426,0 chrXVI 746530 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.27;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4031,438,0 chrXVI 746797 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.21;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2663,297,0 chrXVI 747023 . C A 2340 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.87;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2373,264,0 chrXVI 747120 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=114;Dels=0.00;FS=10.709;HaplotypeScore=8.8201;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.912;QD=23.29;ReadPosRankSum=2.406;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2688,309,0 chrXVI 747167 . T A 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=122;Dels=0.00;FS=5.041;HaplotypeScore=3.8154;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.022;QD=20.93;ReadPosRankSum=3.314;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:4,118:122:99:2587,285,0 chrXVI 747171 . G T 2499 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.02;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.68;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2532,282,0 chrXVI 747369 . T C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=4.290;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.326;QD=21.53;ReadPosRankSum=1.708;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3155,360,0 chrXVI 747485 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.051;QD=21.30;ReadPosRankSum=1.656;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2930,342,0 chrXVI 747557 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.56;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2831,312,0 chrXVI 747815 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.78;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3063,336,0 chrXVI 747842 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.62;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2611,303,0 chrXVI 747971 . C G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.93;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3394,404,0 chrXVI 748400 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.68;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3049,333,0 chrXVI 748650 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2711,297,0 chrXVI 749484 . A T 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.563;QD=21.52;ReadPosRankSum=1.690;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3572,405,0 chrXVI 749668 . C T 4889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.9588;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.280;QD=24.57;ReadPosRankSum=0.612;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4889,537,0 chrXVI 749787 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.07;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3919,464,0 chrXVI 750029 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.0901;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=18.62;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:2323,255,0 chrXVI 750033 . T C 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.154;DP=120;Dels=0.00;FS=7.144;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.584;QD=17.52;ReadPosRankSum=0.687;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2135,231,0 chrXVI 750118 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.5039;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.89;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3286,360,0 chrXVI 750588 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.47;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3371,387,0 chrXVI 750666 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.323;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.361;QD=22.00;ReadPosRankSum=1.636;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3245,366,0 chrXVI 750734 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.590;QD=23.44;ReadPosRankSum=1.708;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3422,381,0 chrXVI 750765 . G C 3177 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1578;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.04;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3210,375,0 chrXVI 750807 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=3.492;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.230;QD=20.71;ReadPosRankSum=1.708;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2994,345,0 chrXVI 750943 . C G 3479.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.04;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3479,393,0 chrXVI 751172 . A G 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=3.850;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.183;QD=23.04;ReadPosRankSum=1.680;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4608,522,0 chrXVI 751586 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.1605;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.29;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4102,450,0 chrXVI 751611 . G T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.15;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3987,441,0 chrXVI 752166 . C A 1772 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1805,198,0 chrXVI 752508 . T C 4660.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=18.4818;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.44;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,224:228:99:4660,543,0 chrXVI 752721 . G C 5210.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5210,597,0 chrXVI 752898 . C T 4538.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.58;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4538,501,0 chrXVI 753099 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.16;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2604,285,0 chrXVI 753119 . T C 2391 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.35;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2424,282,0 chrXVI 753173 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.6957;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.92;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2620,285,0 chrXVI 753339 . T C 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.669;DP=144;Dels=0.00;FS=5.833;HaplotypeScore=8.4110;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.331;QD=21.34;ReadPosRankSum=2.824;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3106,354,0 chrXVI 753414 . A T 2549 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.2081;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.56;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2582,291,0 chrXVI 753479 . A C 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.225;HaplotypeScore=11.4005;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.028;QD=22.93;ReadPosRankSum=1.714;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4334,492,0 chrXVI 753640 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3636,396,0 chrXVI 754107 . C A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.3877;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.31;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3993,453,0 chrXVI 754263 . C G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.15;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3478,402,0 chrXVI 754347 . T C 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=160;Dels=0.00;FS=10.469;HaplotypeScore=269.2733;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-1.017;QD=19.11;ReadPosRankSum=2.933;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:6,153:160:99:3091,337,0 chrXVI 754681 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3545,390,0 chrXVI 754744 . T A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.05;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3319,378,0 chrXVI 755194 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.36;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2721,297,0 chrXVI 755201 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=6.620;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.301;QD=17.33;ReadPosRankSum=2.398;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2511,291,0 chrXVI 755242 . T G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.310;HaplotypeScore=8.5476;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.157;QD=19.11;ReadPosRankSum=1.711;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3206,363,0 chrXVI 755318 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.1404;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.49;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3373,378,0 chrXVI 755437 . T A 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.5355;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.990;QD=23.76;ReadPosRankSum=1.675;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4324,486,0 chrXVI 755682 . G C 1108.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.627;DP=151;Dels=0.00;FS=3.053;HaplotypeScore=16.3407;MLEAC=1;MLEAF=0.500;MQ=56.87;MQ0=0;MQRankSum=-0.601;QD=7.34;ReadPosRankSum=1.244;SB=-5.600e+02 GT:AD:DP:GQ:PL 0/1:75,75:151:99:1138,0,1017 chrXVI 755692 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.88;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3103,357,0 chrXVI 755729 . T C 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=3.932;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.426;QD=22.12;ReadPosRankSum=1.681;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3064,345,0 chrXVI 755818 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0662;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.92;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3196,360,0 chrXVI 755941 . A T 2083 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.26;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2116,234,0 chrXVI 755950 . G C 1870 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.70;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1903,228,0 chrXVI 756115 . T A 2423 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.64;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2456,270,0 chrXVI 756136 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.99;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2254,246,0 chrXVI 756257 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.83;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2613,297,0 chrXVI 756619 . T G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=3.034;HaplotypeScore=11.8653;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.272;QD=21.33;ReadPosRankSum=2.379;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3040,345,0 chrXVI 756669 . G T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.53;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3790,414,0 chrXVI 756671 . T A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.46;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3712,411,0 chrXVI 756770 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.60;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3658,402,0 chrXVI 756785 . A C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=1.059;QD=21.91;ReadPosRankSum=1.632;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3079,351,0 chrXVI 756979 . T C 2112 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5246;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.86;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2145,243,0 chrXVI 757031 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=12.76;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1590,189,0 chrXVI 757033 . A G 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;MQRankSum=0.408;QD=13.52;ReadPosRankSum=1.704;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1696,195,0 chrXVI 757047 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=12.59;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1670,183,0 chrXVI 757054 . T C 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;MQRankSum=-0.273;QD=11.54;ReadPosRankSum=1.706;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:1580,183,0 chrXVI 757111 . T C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=2.672;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.701;QD=17.87;ReadPosRankSum=2.415;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2570,300,0 chrXVI 757135 . G T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.59;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3502,384,0 chrXVI 757165 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.7413;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.61;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3406,396,0 chrXVI 757177 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.24;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3284,378,0 chrXVI 757526 . G T 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=217;Dels=0.00;FS=6.041;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.679;QD=19.90;ReadPosRankSum=-0.223;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:4318,489,0 chrXVI 757653 . T C 4826.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.6110;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.02;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:4826,546,0 chrXVI 757669 . A G 5139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=256;Dels=0.00;FS=2.950;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.174;QD=20.07;ReadPosRankSum=2.372;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:2,252:256:99:5139,585,0 chrXVI 758072 . T C 5959.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=22.66;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5959,672,0 chrXVI 758098 . T C 5446.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.25;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5446,647,0 chrXVI 758112 . C T 5037.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=2.7720;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.99;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5037,546,0 chrXVI 758116 . G A 4993.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=5.1381;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.46;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4993,561,0 chrXVI 758257 . C T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.87;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4082,456,0 chrXVI 758284 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.62;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2815,321,0 chrXVI 758351 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.80;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1884,213,0 chrXVI 758360 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.63;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1869,207,0 chrXVI 758393 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.391;QD=21.51;ReadPosRankSum=1.675;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2657,312,0 chrXVI 758616 . T C 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=3.540;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.278;QD=21.06;ReadPosRankSum=1.704;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2644,312,0 chrXVI 758824 . G T 1733 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.88;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1766,192,0 chrXVI 758911 . A G 3148 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.7623;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.98;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3181,363,0 chrXVI 758947 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.56;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2993,348,0 chrXVI 758960 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.50;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2821,321,0 chrXVI 759209 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.23;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4490,489,0 chrXVI 759355 . C G 4136.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.63;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4136,471,0 chrXVI 759400 . T G 3690.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3690,423,0 chrXVI 759469 . T G 4256.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.38;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4256,489,0 chrXVI 759544 . A T 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.448;QD=22.72;ReadPosRankSum=1.671;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3863,423,0 chrXVI 759705 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.86;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2753,300,0 chrXVI 759776 . C A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.13;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3499,384,0 chrXVI 759895 . C G 2793 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.17;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2826,336,0 chrXVI 759936 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.53;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2940,318,0 chrXVI 760007 . C T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3277,369,0 chrXVI 760748 . T A 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.936;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.631;QD=21.88;ReadPosRankSum=1.709;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3304,372,0 chrXVI 760865 . G T 2926 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2959,321,0 chrXVI 761136 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3427,384,0 chrXVI 761833 . A T 3208 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.12;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3241,357,0 chrXVI 761908 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.32;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2935,330,0 chrXVI 762781 . T C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.722;QD=21.93;ReadPosRankSum=1.703;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2687,321,0 chrXVI 763037 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.273;QD=21.93;ReadPosRankSum=1.706;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2950,345,0 chrXVI 763440 . T C 3836.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8988;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.37;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3836,455,0 chrXVI 764221 . G T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2650;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.24;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3951,435,0 chrXVI 764615 . A T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.40;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4235,462,0 chrXVI 765727 . T G 2802 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.42;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2835,327,0 chrXVI 765928 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3162,351,0 chrXVI 766198 . G A 4027.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=19.9346;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.25;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4027,441,0 chrXVI 766340 . C A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6312;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.38;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3764,420,0 chrXVI 766882 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.22;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3233,378,0 chrXVI 767513 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.98;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2538,282,0 chrXVI 767557 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=3.214;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.715;QD=22.49;ReadPosRankSum=1.700;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2507,291,0 chrXVI 767802 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.29;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3248,357,0 chrXVI 767821 . T C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=6.2021;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.767;QD=20.64;ReadPosRankSum=2.384;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3109,357,0 chrXVI 768045 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.75;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3613,396,0 chrXVI 768147 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3968,456,0 chrXVI 768534 . C T 5062.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.7016;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.70;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5062,561,0 chrXVI 768558 . A G 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=223;Dels=0.00;FS=12.162;HaplotypeScore=13.2618;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.431;QD=21.51;ReadPosRankSum=3.421;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:4,216:223:99:4796,566,0 chrXVI 768950 . A G 2656 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2689,309,0 chrXVI 769166 . T C 2178 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=22.45;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2211,249,0 chrXVI 769507 . C T 78.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.037;DP=40;Dels=0.00;FS=14.771;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=17.49;MQ0=3;MQRankSum=1.999;QD=1.96;ReadPosRankSum=2.078;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:31,8:40:12:111,12,0 chrXVI 769659 . A G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;MQRankSum=0.736;QD=4.65;ReadPosRankSum=-0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:45,6,0 chrXVI 769669 . T A 158.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;MQRankSum=-2.404;QD=2.98;ReadPosRankSum=2.170;SB=-3.561e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:21:191,21,0 chrXVI 769677 . A G 532 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=7.82;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:66:565,66,0 chrXVI 769783 . C A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=25.36;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3254,357,0 chrXVI 769908 . T A 2965 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5638;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.35;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2998,330,0 chrXVI 770049 . A T 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.665;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.658;QD=22.69;ReadPosRankSum=1.697;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2302,255,0 chrXVI 770077 . T C 2092 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.57;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2125,246,0 chrXVI 770162 . A T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.22;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3354,372,0 chrXVI 770238 . G T 2692 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.61;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2725,300,0 chrXVI 770314 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.14;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3911,432,0 chrXVI 770667 . C G 3285.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=156.3045;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=18.35;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3285,390,0 chrXVI 770699 . T A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.34;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3503,387,0 chrXVI 770863 . A T 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-0.564;QD=21.26;ReadPosRankSum=1.712;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3720,402,0 chrXVI 770864 . A T 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.465;QD=20.66;ReadPosRankSum=1.712;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3615,411,0 chrXVI 771861 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.07;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2871,312,0 chrXVI 772048 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.65;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2932,321,0 chrXVI 772366 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.0373;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.50;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4128,453,0 chrXVI 772693 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.03;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2682,303,0 chrXVI 773132 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.09;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2019,219,0 chrXVI 773280 . A T 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.838;QD=21.00;ReadPosRankSum=1.676;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1335,153,0 chrXVI 773283 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.92;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1392,150,0 chrXVI 773341 . C T 845 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.14;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:878,96,0 chrXVI 774130 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.3180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3920,447,0 chrXVI 774271 . C T 4655.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.50;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4655,510,0 chrXVI 774739 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.80;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3739,441,0 chrXVI 774964 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.54;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3380,369,0 chrXVI 775111 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.45;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2650,291,0 chrXVI 775174 . C A 2412 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.79;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2445,279,0 chrXVI 775730 . G T 1475 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.67;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1508,171,0 chrXVI 775734 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=3.699;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.640;QD=19.14;ReadPosRankSum=1.686;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1488,171,0 chrXVI 775847 . T C 1513 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.15;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1546,180,0 chrXVI 775852 . A G 1422 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.96;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1455,165,0 chrXVI 775853 . T G 1403 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=0.762;QD=18.71;ReadPosRankSum=1.686;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1436,165,0 chrXVI 775873 . T G 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.235;DP=82;Dels=0.00;FS=5.901;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=1.556;QD=17.89;ReadPosRankSum=2.099;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1500,152,0 chrXVI 776105 . A T 787.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.091;DP=89;Dels=0.00;FS=188.020;HaplotypeScore=11.2708;MLEAC=1;MLEAF=0.500;MQ=32.57;MQ0=0;MQRankSum=-0.358;QD=8.84;ReadPosRankSum=-7.006;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:42,47:89:42:817,0,42 chrXVI 776164 . G A 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=63;Dels=0.00;FS=32.979;HaplotypeScore=13.9572;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=2.211;QD=16.84;ReadPosRankSum=2.889;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:3,60:63:99:1094,132,0 chrXVI 776262 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=23.27;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1895,204,0 chrXVI 776349 . A G 2295 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.65;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2328,279,0 chrXVI 776361 . G C 2476 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.98;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2509,288,0 chrXVI 776624 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=5.494;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=1.201;QD=20.47;ReadPosRankSum=1.562;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3357,378,0 chrXVI 776686 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.619;QD=22.29;ReadPosRankSum=1.711;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3744,423,0 chrXVI 776791 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=22.72;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2373,273,0 chrXVI 776883 . T C 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=4.437;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;MQRankSum=-0.115;QD=21.69;ReadPosRankSum=1.686;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1660,198,0 chrXVI 776885 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=20.58;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1556,194,0 chrXVI 776897 . C G 1371 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=20.77;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1404,168,0 chrXVI 776901 . T C 1282 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=20.35;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1315,156,0 chrXVI 776932 . G A 877 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=92.7848;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=19.93;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:910,102,0 chrXVI 776990 . G C 1022 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=18.25;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1055,120,0 chrXVI 777033 . T C 1074 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=53.9466;MLEAC=2;MLEAF=1.00;MQ=35.58;MQ0=0;QD=17.61;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1107,132,0 chrXVI 777082 . T A 391 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=0;QD=17.00;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:54:424,54,0 chrXVI 777117 . C G 256 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.33;SB=-1.359e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:33:289,33,0 chrXVI 777167 . A G 831 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.31;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:99:864,108,0 chrXVI 777255 . G A 1352 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1385,159,0 chrXVI 777332 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2670,291,0 chrXVI 777410 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.69;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2801,306,0 chrXVI 777469 . G T 2924 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7111;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.39;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2957,324,0 chrXVI 777662 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.78;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2194,237,0 chrXVI 777667 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.56;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1982,222,0 chrXVI 777676 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.41;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1948,213,0 chrXVI 778041 . C T 4222.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=21.7015;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.58;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4222,465,0 chrXVI 778075 . C T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.6004;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.55;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4169,453,0 chrXVI 778413 . C A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.33;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3706,408,0 chrXVI 778447 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.1248;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.90;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3766,423,0 chrXVI 778483 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.56;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3536,399,0 chrXVI 778491 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.4907;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.489;QD=20.89;ReadPosRankSum=0.273;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3573,393,0 chrXVI 778577 . T A 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=2.776;HaplotypeScore=17.2370;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.223;QD=23.62;ReadPosRankSum=2.400;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3520,393,0 chrXVI 778653 . C T 4570.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.08;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4570,522,0 chrXVI 778678 . G A 4517.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.05;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4517,510,0 chrXVI 778795 . A C 4652.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.54;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4652,525,0 chrXVI 779145 . T A 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.313;QD=19.60;ReadPosRankSum=1.684;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2856,315,0 chrXVI 779146 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.46;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2918,315,0 chrXVI 779486 . G A 4826.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.43;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4826,531,0 chrXVI 779914 . A G 2558 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.25;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2591,294,0 chrXVI 780119 . A C 2767 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.87;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2800,330,0 chrXVI 780140 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.56;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2312,255,0 chrXVI 780448 . T C 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;MQRankSum=0.078;QD=22.73;ReadPosRankSum=1.681;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1556,180,0 chrXVI 780553 . A G 2156 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2189,252,0 chrXVI 780656 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2917,321,0 chrXVI 780767 . T A 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.828;QD=23.10;ReadPosRankSum=2.343;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3742,438,0 chrXVI 780924 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.877;QD=22.02;ReadPosRankSum=2.865;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3479,402,0 chrXVI 781039 . A T 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=5.219;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.199;QD=23.45;ReadPosRankSum=1.708;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3354,375,0 chrXVI 781070 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.75;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3187,345,0 chrXVI 781537 . A G 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=72;Dels=0.01;FS=2.967;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.268;QD=21.35;ReadPosRankSum=2.381;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1570,180,0 chrXVI 781574 . G A 1966 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=77.9255;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.86;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1999,219,0 chrXVI 781577 . A C 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.014;DP=87;Dels=0.00;FS=2.871;HaplotypeScore=79.7009;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.731;QD=21.14;ReadPosRankSum=2.307;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1872,216,0 chrXVI 781643 . C A 1743 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=12.6901;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.15;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1776,201,0 chrXVI 781649 . C A 1627 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=7.1442;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.14;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1660,183,0 chrXVI 781701 . T C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.751;QD=18.96;ReadPosRankSum=2.401;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1929,225,0 chrXVI 781725 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.52;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2089,228,0 chrXVI 781741 . T A 2095 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.22;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2128,240,0 chrXVI 783424 . C A 2121 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.42;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2154,234,0 chrXVI 783492 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2563,282,0 chrXVI 783637 . A G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=95;Dels=0.00;FS=6.542;HaplotypeScore=9.8131;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-2.372;QD=22.02;ReadPosRankSum=2.346;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2125,246,0 chrXVI 783719 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2926,324,0 chrXVI 783796 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2554,279,0 chrXVI 784177 . C T 4514.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.2658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4514,492,0 chrXVI 784693 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.38;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4020,476,0 chrXVI 784888 . T C 3138 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3171,366,0 chrXVI 785197 . A G 3103 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.16;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3136,360,0 chrXVI 785578 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=3.848;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.124;QD=21.43;ReadPosRankSum=1.702;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2497,282,0 chrXVI 785712 . T G 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=209;Dels=0.00;FS=2.953;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.163;QD=22.19;ReadPosRankSum=2.414;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4638,522,0 chrXVI 785737 . A G 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=208;Dels=0.00;FS=13.952;HaplotypeScore=7.9894;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.204;QD=21.90;ReadPosRankSum=3.385;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:4,204:208:99:4555,519,0 chrXVI 785910 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=171;Dels=0.00;FS=2.584;HaplotypeScore=10.5451;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.249;QD=22.82;ReadPosRankSum=1.326;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3902,453,0 chrXVI 786015 . A G 3064 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=128.8518;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.20;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3097,354,0 chrXVI 786161 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=24.31;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3193,348,0 chrXVI 786231 . C T 6846.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=3.4876;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=20.44;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,335:335:99:6846,753,0 chrXVI 786234 . C T 6810.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=5.0103;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=20.03;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,339:340:99:6810,747,0 chrXVI 786282 . T C 177.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.729;DP=354;Dels=0.00;FS=63.530;HaplotypeScore=12.1873;MLEAC=1;MLEAF=0.500;MQ=41.47;MQ0=0;MQRankSum=-4.178;QD=0.50;ReadPosRankSum=-1.942;SB=-5.410e+02 GT:AD:DP:GQ:PL 0/1:249,105:354:99:207,0,2968 chrXVI 786288 . G A 548.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.542;DP=346;Dels=0.00;FS=31.965;HaplotypeScore=20.5654;MLEAC=1;MLEAF=0.500;MQ=39.66;MQ0=0;MQRankSum=-1.139;QD=1.58;ReadPosRankSum=-0.294;SB=-1.054e+03 GT:AD:DP:GQ:PL 0/1:208,136:346:99:578,0,2137 chrXVI 786303 . T C 692.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.668;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=24.7339;MLEAC=1;MLEAF=0.500;MQ=40.32;MQ0=0;MQRankSum=-6.383;QD=2.05;ReadPosRankSum=-2.118;SB=-6.900e+02 GT:AD:DP:GQ:PL 0/1:213,123:337:99:722,0,2614 chrXVI 786306 . G A 590.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.748;DP=334;Dels=0.00;FS=3.296;HaplotypeScore=26.3112;MLEAC=1;MLEAF=0.500;MQ=40.61;MQ0=0;MQRankSum=-6.564;QD=1.77;ReadPosRankSum=-1.641;SB=-7.350e+02 GT:AD:DP:GQ:PL 0/1:226,105:334:99:620,0,2683 chrXVI 786309 . G A 487.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.487;DP=341;Dels=0.00;FS=4.119;HaplotypeScore=23.1565;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=0;MQRankSum=-6.829;QD=1.43;ReadPosRankSum=-1.834;SB=-6.860e+02 GT:AD:DP:GQ:PL 0/1:241,96:341:99:517,0,3056 chrXVI 786312 . T C 212.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;DP=338;Dels=0.00;FS=11.854;HaplotypeScore=17.6905;MLEAC=1;MLEAF=0.500;MQ=42.13;MQ0=0;MQRankSum=-6.792;QD=0.63;ReadPosRankSum=0.070;SB=-4.150e+02 GT:AD:DP:GQ:PL 0/1:260,77:338:99:242,0,3595 chrXVI 786315 . T C 67.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.430;DP=349;Dels=0.00;FS=12.261;HaplotypeScore=17.5851;MLEAC=1;MLEAF=0.500;MQ=42.90;MQ0=0;MQRankSum=-7.212;QD=0.19;ReadPosRankSum=0.374;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:279,70:349:97:97,0,4214 chrXVI 786420 . G A 317.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.510;DP=616;Dels=0.00;FS=6.211;HaplotypeScore=76.3675;MLEAC=1;MLEAF=0.500;MQ=39.74;MQ0=0;MQRankSum=-4.443;QD=0.51;ReadPosRankSum=-7.466;SB=-1.074e+03 GT:AD:DP:GQ:PL 0/1:445,167:616:99:347,0,6846 chrXVI 786450 . T G 495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.602;DP=415;Dels=0.00;FS=78.864;HaplotypeScore=56.0915;MLEAC=1;MLEAF=0.500;MQ=39.60;MQ0=0;MQRankSum=-6.355;QD=1.19;ReadPosRankSum=-14.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:276,122:415:99:525,0,3400 chrXVI 786508 . A G 5920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.315;DP=350;Dels=0.00;FS=2.263;HaplotypeScore=275.5043;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;MQRankSum=0.395;QD=16.91;ReadPosRankSum=1.400;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:5,344:350:99:5920,678,0 chrXVI 786585 . A G 4495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;MQRankSum=-0.646;QD=19.98;ReadPosRankSum=2.969;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:4495,504,0 chrXVI 786663 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.9718;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=21.40;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3467,384,0 chrXVI 787292 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.1653;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.38;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4232,462,0 chrXVI 787395 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.36;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2297,252,0 chrXVI 787485 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.787;QD=19.39;ReadPosRankSum=1.706;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2592,291,0 chrXVI 787542 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;QD=15.41;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2021,222,0 chrXVI 787549 . C A 1826 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=14.97;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1859,204,0 chrXVI 787570 . T A 90.26 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=83.9284;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=0.84;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:15:123,15,0 chrXVI 787576 . A G 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=-0.237;QD=11.36;ReadPosRankSum=1.696;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1124,129,0 chrXVI 787696 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.57;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3238,369,0 chrXVI 787859 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=12.1734;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.32;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3839,435,0 chrXVI 788088 . A G 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=136;Dels=0.00;FS=6.107;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.563;QD=22.22;ReadPosRankSum=2.934;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3055,348,0 chrXVI 788197 . A G 2926 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.34;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2959,348,0 chrXVI 788230 . T C 3132 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0429;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.91;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3165,360,0 chrXVI 788320 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.14;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2324,258,0 chrXVI 788362 . C T 2160 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.23;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2193,243,0 chrXVI 788431 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=17.96;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2278,261,0 chrXVI 788440 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.19;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2234,240,0 chrXVI 788617 . C G 4276.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.57;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4276,492,0 chrXVI 788833 . G A 5997.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.43;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5997,657,0 chrXVI 789056 . T C 7363.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.37;SB=-3.374e+03 GT:AD:DP:GQ:PL 1/1:0,314:315:99:7363,834,0 chrXVI 789289 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.13;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3055,339,0 chrXVI 789301 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.802;QD=18.13;ReadPosRankSum=1.686;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2734,315,0 chrXVI 789370 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6539;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.34;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,167:169:99:2964,330,0 chrXVI 789402 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.64;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:2996,357,0 chrXVI 789504 . T C 1704 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.42;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1737,198,0 chrXVI 789549 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.99;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1941,210,0 chrXVI 789596 . A G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.638;QD=17.99;ReadPosRankSum=1.687;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,75:79:99:1454,174,0 chrXVI 789656 . C A 1771 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;DP=103;Dels=0.00;FS=7.854;HaplotypeScore=9.7375;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=-0.060;QD=17.19;ReadPosRankSum=2.187;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1804,204,0 chrXVI 789657 . A T 1802 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.887;DP=105;Dels=0.00;FS=7.613;HaplotypeScore=9.7375;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=-0.270;QD=17.16;ReadPosRankSum=2.075;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1835,207,0 chrXVI 789659 . A T 1938 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=107;Dels=0.00;FS=7.498;HaplotypeScore=10.7291;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-1.149;QD=18.11;ReadPosRankSum=2.403;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:1971,213,0 chrXVI 789665 . A T 2008 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.402;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=0.239;QD=17.31;ReadPosRankSum=1.643;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2041,225,0 chrXVI 789882 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=22.63;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2002,228,0 chrXVI 790006 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.38;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2342,264,0 chrXVI 790026 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.93;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2489,276,0 chrXVI 790660 . A C 4163.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.4543;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.92;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4163,477,0 chrXVI 790673 . C G 3901.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.75;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3901,435,0 chrXVI 790706 . G T 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9090;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.181;QD=20.58;ReadPosRankSum=1.711;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3395,369,0 chrXVI 790742 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9492;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.03;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3445,390,0 chrXVI 790766 . A C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=168;Dels=0.01;FS=2.538;HaplotypeScore=5.3257;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.285;QD=20.13;ReadPosRankSum=2.921;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3382,390,0 chrXVI 790820 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.70;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2869,315,0 chrXVI 790847 . G C 2275 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=17.64;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2308,279,0 chrXVI 790856 . T C 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=129;Dels=0.00;FS=3.035;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=-0.528;QD=17.91;ReadPosRankSum=2.411;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2344,267,0 chrXVI 790859 . A G 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.179;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=0.225;QD=17.36;ReadPosRankSum=1.653;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2307,264,0 chrXVI 791329 . A G 2863 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.75;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2896,327,0 chrXVI 791332 . T C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.797;QD=20.26;ReadPosRankSum=1.707;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2809,321,0 chrXVI 791347 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.93;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2723,297,0 chrXVI 791526 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=3.088;HaplotypeScore=9.3658;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.261;QD=21.96;ReadPosRankSum=1.712;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3711,443,0 chrXVI 792460 . C T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.0326;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.95;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4338,480,0 chrXVI 792640 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=188;Dels=0.00;FS=8.403;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.182;QD=19.00;ReadPosRankSum=2.344;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:3572,425,0 chrXVI 792647 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.65;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3800,426,0 chrXVI 792842 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.98;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3597,411,0 chrXVI 793048 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.01;FS=3.024;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.409;QD=17.36;ReadPosRankSum=2.382;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:3245,369,0 chrXVI 793049 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=189;Dels=0.00;FS=6.077;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.096;QD=16.51;ReadPosRankSum=2.792;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:3154,357,0 chrXVI 793555 . T G 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.094;QD=21.92;ReadPosRankSum=1.702;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2554,303,0 chrXVI 793650 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.09;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2247,255,0 chrXVI 793867 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.87;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3184,351,0 chrXVI 794337 . T C 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=5.199;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.397;QD=21.52;ReadPosRankSum=1.714;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4153,500,0 chrXVI 794674 . T A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.73;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3559,390,0 chrXVI 794702 . A T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.29;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3423,381,0 chrXVI 794728 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.6597;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.55;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3156,369,0 chrXVI 795092 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=21.16;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2678,297,0 chrXVI 795093 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=2.990;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;MQRankSum=0.307;QD=20.68;ReadPosRankSum=2.331;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2597,300,0 chrXVI 795138 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=16.81;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2016,231,0 chrXVI 795149 . T A 1848 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=2.8473;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=17.27;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1881,207,0 chrXVI 795157 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=17.91;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1806,201,0 chrXVI 795291 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.77;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2481,279,0 chrXVI 795316 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.91;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2301,258,0 chrXVI 796263 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=180;Dels=0.00;FS=7.247;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.940;QD=21.74;ReadPosRankSum=2.422;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3914,441,0 chrXVI 796824 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.795;QD=22.31;ReadPosRankSum=1.661;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4395,495,0 chrXVI 797063 . T C 3416.01 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=18.57;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3416,396,0 chrXVI 797065 . C T 3420.01 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=18.90;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3420,378,0 chrXVI 797066 . C T 3420.01 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=18.79;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3420,378,0 chrXVI 797069 . T C 3361.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=187;Dels=0.00;FS=8.207;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;MQRankSum=-1.281;QD=17.97;ReadPosRankSum=2.384;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3361,384,0 chrXVI 797112 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=166;Dels=0.00;FS=3.724;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-1.249;QD=18.80;ReadPosRankSum=1.690;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3154,354,0 chrXVI 797136 . C A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.93;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3969,438,0 chrXVI 797247 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.72;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3182,348,0 chrXVI 797530 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=135;Dels=0.00;FS=3.385;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.263;QD=21.93;ReadPosRankSum=1.680;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2994,354,0 chrXVI 797744 . T C 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.584;HaplotypeScore=8.0259;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.699;QD=21.55;ReadPosRankSum=1.699;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2339,282,0 chrXVI 798282 . C A 2685 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.31;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2718,309,0 chrXVI 798490 . A C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.26;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4162,477,0 chrXVI 798575 . G A 4352.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.03;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4352,477,0 chrXVI 798579 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.40;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4256,465,0 chrXVI 798639 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.54;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3479,387,0 chrXVI 798879 . C T 3910.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.27;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3910,429,0 chrXVI 798911 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.31;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3949,435,0 chrXVI 798952 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=3.689;HaplotypeScore=7.1452;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.456;QD=20.55;ReadPosRankSum=1.664;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3177,360,0 chrXVI 798977 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.51;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2722,309,0 chrXVI 799015 . T A 2688 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.68;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2721,309,0 chrXVI 799159 . T C 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=3.859;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.313;QD=23.13;ReadPosRankSum=1.704;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2901,333,0 chrXVI 799416 . A T 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=4.624;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.398;QD=23.60;ReadPosRankSum=1.637;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3422,378,0 chrXVI 799432 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6985;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.02;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3369,378,0 chrXVI 799652 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.46;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3178,351,0 chrXVI 799713 . A C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=134;Dels=0.00;FS=8.730;HaplotypeScore=11.3610;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.823;QD=21.85;ReadPosRankSum=2.413;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2961,345,0 chrXVI 799851 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=151;Dels=0.00;FS=5.259;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.052;QD=19.09;ReadPosRankSum=3.365;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:4,146:151:99:2915,339,0 chrXVI 799871 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.41;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3196,348,0 chrXVI 799893 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=16.73;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2677,309,0 chrXVI 799899 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.976;QD=16.64;ReadPosRankSum=1.669;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2778,315,0 chrXVI 800037 . C A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.32;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3526,393,0 chrXVI 800057 . A C 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.714;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.818;QD=21.58;ReadPosRankSum=2.415;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3140,369,0 chrXVI 800109 . G C 2161 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=18.96;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2194,264,0 chrXVI 800157 . C A 2514 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.28;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2547,282,0 chrXVI 800298 . A G 2366 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.97;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2399,279,0 chrXVI 800388 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.02;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2609,285,0 chrXVI 800421 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.670;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.802;QD=20.28;ReadPosRankSum=1.709;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3054,354,0 chrXVI 800445 . G A 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.5394;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.947;QD=20.12;ReadPosRankSum=0.161;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3461,366,0 chrXVI 800486 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.9235;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.05;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3303,363,0 chrXVI 800493 . A G 2979 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.7466;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.28;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3012,345,0 chrXVI 800589 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=4.139;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=1.669;QD=18.25;ReadPosRankSum=1.690;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3081,348,0 chrXVI 800601 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.65;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3451,378,0 chrXVI 800727 . A G 5237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=233;Dels=0.00;FS=3.421;HaplotypeScore=16.0487;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-1.167;QD=22.48;ReadPosRankSum=1.702;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5237,591,0 chrXVI 800844 . C T 5443.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.77;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5443,594,0 chrXVI 800883 . A G 5089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=229;Dels=0.00;FS=2.999;HaplotypeScore=15.4012;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.659;QD=22.22;ReadPosRankSum=2.396;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5089,576,0 chrXVI 800985 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.19;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3371,369,0 chrXVI 801066 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.73;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3520,390,0 chrXVI 801138 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.40;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3300,360,0 chrXVI 801336 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.9765;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.81;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4381,495,0 chrXVI 801399 . A T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.71;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4349,480,0 chrXVI 801614 . T C 5326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=226;Dels=0.00;FS=2.890;HaplotypeScore=14.9297;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.023;QD=23.57;ReadPosRankSum=2.416;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:2,220:226:99:5326,600,0 chrXVI 801650 . C T 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.261;QD=24.07;ReadPosRankSum=1.043;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:5030,558,0 chrXVI 801741 . G A 4258.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.08;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4258,483,0 chrXVI 801756 . C G 4491.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.79;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4491,519,0 chrXVI 801978 . T C 2613 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.96;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2646,303,0 chrXVI 802039 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.39;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1339,150,0 chrXVI 802127 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.15;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2204,243,0 chrXVI 802139 . T G 1791 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.07;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1824,204,0 chrXVI 802415 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=111;Dels=0.00;FS=4.811;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.906;QD=21.66;ReadPosRankSum=1.700;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2437,294,0 chrXVI 802526 . T G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5181;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.016;QD=17.24;ReadPosRankSum=1.670;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:1964,222,0 chrXVI 802577 . T C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=155;Dels=0.00;FS=9.821;HaplotypeScore=9.7442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.013;QD=19.39;ReadPosRankSum=2.955;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3039,348,0 chrXVI 802797 . C A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.49;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4094,450,0 chrXVI 802871 . C T 5926.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=18.2981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.29;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5926,657,0 chrXVI 802959 . A G 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=205;Dels=0.00;FS=6.523;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.317;QD=22.30;ReadPosRankSum=2.426;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4571,551,0 chrXVI 803171 . T G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=5.441;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.654;QD=20.97;ReadPosRankSum=1.706;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2822,324,0 chrXVI 803543 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=2.965;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.128;QD=21.52;ReadPosRankSum=2.369;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3939,456,0 chrXVI 803590 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.95;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3973,450,0 chrXVI 804027 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.91;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3482,390,0 chrXVI 804145 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2306,252,0 chrXVI 804249 . A T 1545 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.06;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1578,174,0 chrXVI 804258 . T C 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.706;QD=19.26;ReadPosRankSum=1.647;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1612,186,0 chrXVI 804292 . A T 1724 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.39;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1757,189,0 chrXVI 804352 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.87;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1724,189,0 chrXVI 804410 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.68;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2256,258,0 chrXVI 804481 . T C 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;MQRankSum=0.108;QD=23.43;ReadPosRankSum=1.624;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2306,264,0 chrXVI 810323 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.83;MQ0=7;QD=1.13;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:6:47,6,0 chrXVI 810354 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.30;MQ0=6;MQRankSum=-0.736;QD=1.90;ReadPosRankSum=-0.736;SB=1.28 GT:AD:DP:GQ:PL 1/1:4,8:12:6:54,6,0 chrXVI 810641 . A G 1916 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=21.05;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1949,216,0 chrXVI 810774 . T G 1133 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.5927;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=19.53;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:58:99:1166,135,0 chrXVI 810785 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=22.48;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1382,156,0 chrXVI 811565 . A G 4082.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.31;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4082,462,0 chrXVI 811809 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.61;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3221,366,0 chrXVI 811842 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.04;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2410,267,0 chrXVI 811965 . A G 2749 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.98;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2782,321,0 chrXVI 812355 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1893,210,0 chrXVI 812552 . G C 2273 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.8198;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.73;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2306,264,0 chrXVI 812762 . T C 927 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.26;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,55:57:99:960,111,0 chrXVI 812845 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.70;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1905,216,0 chrXVI 812990 . T C 868 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:901,105,0 chrXVI 813147 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=16.7899;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.35;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1742,204,0 chrXVI 813201 . A G 3085 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.29;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3118,354,0 chrXVI 813489 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.048;QD=21.56;ReadPosRankSum=1.691;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3622,417,0 chrXVI 813633 . G A 4915.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4915,546,0 chrXVI 813879 . C G 5789.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=26.0631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:0,262:269:99:5789,683,0 chrXVI 814111 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=213;Dels=0.00;FS=5.155;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.195;QD=18.61;ReadPosRankSum=1.683;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:3963,450,0 chrXVI 814215 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2007,225,0 chrXVI 815375 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.612;QD=24.01;ReadPosRankSum=1.636;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3482,365,0 chrXVI 815485 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.21;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2831,309,0 chrXVI 816173 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=159;Dels=0.00;FS=3.391;HaplotypeScore=11.8077;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.950;QD=20.84;ReadPosRankSum=1.687;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,154:159:99:3314,381,0 chrXVI 816378 . T C 3072 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6325;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.04;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3105,357,0 chrXVI 816397 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=158;Dels=0.00;FS=6.273;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.070;QD=19.60;ReadPosRankSum=2.418;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3130,357,0 chrXVI 816490 . A T 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=7.220;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.623;QD=23.52;ReadPosRankSum=2.347;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3387,372,0 chrXVI 816544 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.040;QD=21.92;ReadPosRankSum=1.706;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2904,330,0 chrXVI 816745 . A G 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=112;Dels=0.00;FS=2.631;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.166;QD=21.96;ReadPosRankSum=2.339;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2493,279,0 chrXVI 817039 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.67;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3086,333,0 chrXVI 817529 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2212,252,0 chrXVI 817892 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.81;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2676,291,0 chrXVI 818108 . T C 2024 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.76;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2057,237,0 chrXVI 818228 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3104,339,0 chrXVI 818284 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.38;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3881,426,0 chrXVI 818544 . T A 2560 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.932;DP=362;Dels=0.00;FS=4.698;HaplotypeScore=14.6248;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;MQRankSum=-10.103;QD=7.07;ReadPosRankSum=15.013;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:172,190:362:91:2593,91,0 chrXVI 818559 . A T 1661.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.237;DP=361;Dels=0.00;FS=12.615;HaplotypeScore=18.4188;MLEAC=1;MLEAF=0.500;MQ=42.38;MQ0=0;MQRankSum=-14.208;QD=4.60;ReadPosRankSum=-11.792;SB=-1.001e+03 GT:AD:DP:GQ:PL 0/1:202,159:361:99:1691,0,1225 chrXVI 818562 . G T 1463.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.196;DP=354;Dels=0.00;FS=15.283;HaplotypeScore=17.6301;MLEAC=1;MLEAF=0.500;MQ=42.14;MQ0=0;MQRankSum=-15.224;QD=4.13;ReadPosRankSum=-13.777;SB=-9.150e+02 GT:AD:DP:GQ:PL 0/1:200,150:354:99:1493,0,1261 chrXVI 818565 . C T 1356.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=11.894;DP=352;Dels=0.00;FS=17.826;HaplotypeScore=14.9748;MLEAC=1;MLEAF=0.500;MQ=42.57;MQ0=0;MQRankSum=-15.249;QD=3.85;ReadPosRankSum=-14.954;SB=-9.030e+02 GT:AD:DP:GQ:PL 0/1:204,148:352:99:1386,0,1248 chrXVI 818568 . C A 1249.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=11.647;DP=351;Dels=0.00;FS=15.730;HaplotypeScore=15.0815;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=0;MQRankSum=-15.726;QD=3.56;ReadPosRankSum=-15.368;SB=-7.760e+02 GT:AD:DP:GQ:PL 0/1:210,138:351:99:1279,0,1266 chrXVI 818826 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.65;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2653,294,0 chrXVI 818975 . A G 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.699;QD=22.40;ReadPosRankSum=1.672;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1310,147,0 chrXVI 819096 . G C 1144 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.58;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1177,135,0 chrXVI 819285 . G T 414 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=18.00;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:447,51,0 chrXVI 819289 . T C 421 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=20.05;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:454,51,0 chrXVI 819290 . G C 396 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=18.86;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:429,51,0 chrXVI 819305 . C A 365 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=17.38;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:45:398,45,0 chrXVI 819312 . T G 276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.041;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.561;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:36:309,36,0 chrXVI 819411 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.78;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1605,183,0 chrXVI 819444 . C G 1794 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.58;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1827,210,0 chrXVI 819479 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=24.16;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1942,213,0 chrXVI 819509 . A T 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.933;DP=65;Dels=0.00;FS=7.715;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.679;QD=23.09;ReadPosRankSum=1.626;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1534,168,0 chrXVI 819614 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=74.7693;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.97;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1797,198,0 chrXVI 820356 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.12;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2631,315,0 chrXVI 820380 . G A 2180 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.96;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2213,249,0 chrXVI 820928 . C A 2936 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.76;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2969,321,0 chrXVI 820949 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.34;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2935,333,0 chrXVI 821166 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.93;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2984,327,0 chrXVI 821426 . T C 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.533;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.054;QD=21.19;ReadPosRankSum=1.696;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2088,237,0 chrXVI 821432 . A C 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-1.099;QD=20.65;ReadPosRankSum=1.658;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1995,225,0 chrXVI 821451 . C A 1701 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.78;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1734,198,0 chrXVI 821491 . T G 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.684;QD=16.43;ReadPosRankSum=1.641;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1282,156,0 chrXVI 821526 . C T 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9616;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.224;QD=11.28;ReadPosRankSum=0.449;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:5,73:78:81:913,81,0 chrXVI 821586 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=16.19;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1344,156,0 chrXVI 821703 . T C 1895 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.06;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1928,222,0 chrXVI 821711 . A G 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.222;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.196;QD=21.26;ReadPosRankSum=1.608;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1819,207,0 chrXVI 822057 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.89;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4157,471,0 chrXVI 822251 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.27;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3446,390,0 chrXVI 822297 . C G 3561.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.8373;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=17.89;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3561,408,0 chrXVI 822366 . G A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.72;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4084,444,0 chrXVI 822502 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.93;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3377,384,0 chrXVI 822514 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.55;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3540,390,0 chrXVI 822745 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.0651;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.23;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4506,504,0 chrXVI 822901 . A G 5746.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.26;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5746,677,0 chrXVI 823042 . T C 5699.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.95;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:5699,666,0 chrXVI 823454 . C T 5810.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5810,639,0 chrXVI 824056 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.214;HaplotypeScore=16.7021;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.574;QD=20.78;ReadPosRankSum=1.687;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3213,366,0 chrXVI 824110 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.82;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3674,402,0 chrXVI 824182 . A C 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.023;DP=98;Dels=0.00;FS=4.748;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=1.269;QD=19.96;ReadPosRankSum=2.374;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1989,208,0 chrXVI 824188 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.44;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1940,213,0 chrXVI 824466 . T C 708 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:87:741,87,0 chrXVI 824483 . A T 977 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1010,114,0 chrXVI 824700 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.09;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2919,324,0 chrXVI 824738 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.42;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3125,342,0 chrXVI 824936 . A G 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.149;QD=21.01;ReadPosRankSum=1.643;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2470,288,0 chrXVI 825000 . T C 1297 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=66.7112;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=15.82;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1330,153,0 chrXVI 825040 . C G 1819 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=15.68;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1852,216,0 chrXVI 825051 . A G 1829 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0889;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=14.52;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1862,219,0 chrXVI 825143 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.37;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2977,327,0 chrXVI 825536 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3693,417,0 chrXVI 825571 . C G 4325.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4325,501,0 chrXVI 825826 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=3.219;HaplotypeScore=9.6753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.543;QD=22.41;ReadPosRankSum=1.678;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2924,333,0 chrXVI 825962 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.73;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2976,330,0 chrXVI 826071 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3014,342,0 chrXVI 826128 . A C 2802 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.23;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2835,330,0 chrXVI 826190 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.42;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3127,342,0 chrXVI 826380 . T C 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=137;Dels=0.00;FS=3.023;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.283;QD=22.96;ReadPosRankSum=2.378;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3179,357,0 chrXVI 826410 . A C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-2.009;QD=21.43;ReadPosRankSum=2.416;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,143:150:99:3248,372,0 chrXVI 826583 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.99;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3548,387,0 chrXVI 826851 . T A 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=122;Dels=0.00;FS=2.638;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;MQRankSum=-0.232;QD=22.75;ReadPosRankSum=2.409;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2808,318,0 chrXVI 826929 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.8341;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.78;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1820,207,0 chrXVI 827031 . A T 3294.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.41;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3294,366,0 chrXVI 827196 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.966;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.218;QD=20.97;ReadPosRankSum=1.691;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3502,414,0 chrXVI 827223 . G T 2987 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.10;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3020,333,0 chrXVI 827234 . T C 2535 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.35;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2568,297,0 chrXVI 827379 . G A 4528.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=17.7682;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.67;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4528,501,0 chrXVI 827639 . G T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.5717;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.93;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3789,417,0 chrXVI 827703 . C T 4519.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.3032;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.71;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4519,492,0 chrXVI 827715 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.4628;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.51;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3958,456,0 chrXVI 827752 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.37;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3440,381,0 chrXVI 827895 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.713;QD=21.63;ReadPosRankSum=1.694;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3894,447,0 chrXVI 828087 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.30;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3037,345,0 chrXVI 828154 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=146;Dels=0.00;FS=11.282;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.345;QD=20.89;ReadPosRankSum=2.883;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3083,351,0 chrXVI 828223 . T A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.52;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3927,435,0 chrXVI 828256 . T G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=165;Dels=0.00;FS=5.241;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.119;QD=22.15;ReadPosRankSum=2.869;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:3,158:165:99:3654,414,0 chrXVI 828477 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.55;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3360,378,0 chrXVI 828484 . G T 3110 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.46;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3143,354,0 chrXVI 828711 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=15.75;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1955,225,0 chrXVI 828891 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.338;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.707;QD=22.35;ReadPosRankSum=0.031;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3800,402,0 chrXVI 829002 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=4.440;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.394;QD=20.09;ReadPosRankSum=1.669;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3295,381,0 chrXVI 829035 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.259;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.8854;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.458;QD=18.61;ReadPosRankSum=0.303;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3141,354,0 chrXVI 829198 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=149;Dels=0.00;FS=3.680;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.567;QD=20.10;ReadPosRankSum=1.685;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3028,354,0 chrXVI 829372 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.31;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2466,270,0 chrXVI 829418 . A C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=14.4590;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.192;QD=19.37;ReadPosRankSum=1.706;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2648,300,0 chrXVI 829624 . T C 1225 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=20.08;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1258,150,0 chrXVI 829657 . T C 752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;MQRankSum=-0.226;QD=16.00;ReadPosRankSum=1.431;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:1,45:47:90:785,90,0 chrXVI 829698 . C T 181.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=36;Dels=0.00;FS=1.491;HaplotypeScore=21.6497;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-0.632;QD=5.03;ReadPosRankSum=-3.909;SB=-5.303e+01 GT:AD:DP:GQ:PL 1/1:22,14:36:24:214,24,0 chrXVI 829730 . C T 512 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=13.13;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:60:545,60,0 chrXVI 830004 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.05;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4109,459,0 chrXVI 830277 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.7583;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.57;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3567,405,0 chrXVI 830811 . C A 154.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:187,21,0 chrXVI 830857 . T C 112.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:145,15,0 chrXVI 831160 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.48;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3737,414,0 chrXVI 831178 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.9496;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.00;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3410,390,0 chrXVI 831601 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3902,444,0 chrXVI 831747 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.086;QD=22.51;ReadPosRankSum=1.713;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3985,456,0 chrXVI 832034 . A C 5121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=253;Dels=0.00;FS=8.843;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.357;QD=20.24;ReadPosRankSum=2.371;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:2,249:253:99:5121,585,0 chrXVI 832082 . G C 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.046;DP=190;Dels=0.00;FS=173.142;HaplotypeScore=32.7968;MLEAC=1;MLEAF=0.500;MQ=56.12;MQ0=0;MQRankSum=-1.101;QD=0.50;ReadPosRankSum=-5.347;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,45:190:99:125,0,1429 chrXVI 832084 . T C 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.156;DP=198;Dels=0.00;FS=13.591;HaplotypeScore=38.2792;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.998;QD=12.42;ReadPosRankSum=2.439;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:5,192:198:99:2492,297,0 chrXVI 832297 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.6067;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.39;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:4615,528,0 chrXVI 832403 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4720,525,0 chrXVI 832535 . T C 5043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.631;QD=21.28;ReadPosRankSum=1.717;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5043,588,0 chrXVI 832685 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=211;Dels=0.00;FS=5.234;HaplotypeScore=19.6505;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.156;QD=19.37;ReadPosRankSum=3.335;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:4,206:211:99:4088,465,0 chrXVI 832807 . T G 4658.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.3630;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.08;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4658,528,0 chrXVI 832826 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.07;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3813,455,0 chrXVI 833262 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=168;Dels=0.00;FS=9.268;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=2.347;QD=23.35;ReadPosRankSum=2.922;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3922,447,0 chrXVI 833341 . T C 4300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=189;Dels=0.00;FS=7.674;HaplotypeScore=10.9791;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.007;QD=22.75;ReadPosRankSum=2.371;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4300,483,0 chrXVI 833382 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3324,369,0 chrXVI 833507 . A T 3172 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.82;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3205,360,0 chrXVI 833512 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.59;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3268,369,0 chrXVI 833734 . A G 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.268;QD=18.60;ReadPosRankSum=1.711;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3176,351,0 chrXVI 834026 . C T 6039.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.16;SB=-3.225e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6039,663,0 chrXVI 834185 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4019,474,0 chrXVI 834395 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.488;QD=21.40;ReadPosRankSum=1.698;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4429,513,0 chrXVI 834534 . T G 4628.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.93;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4628,531,0 chrXVI 834550 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=197;Dels=0.00;FS=12.040;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-0.253;QD=21.43;ReadPosRankSum=2.943;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:3,192:197:99:4222,474,0 chrXVI 834558 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=4.432;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.308;QD=21.33;ReadPosRankSum=1.697;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4202,480,0 chrXVI 834570 . T G 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=196;Dels=0.00;FS=9.632;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.520;QD=20.01;ReadPosRankSum=2.412;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3922,453,0 chrXVI 834629 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.38;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3831,426,0 chrXVI 834822 . A G 3713.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.65;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3713,423,0 chrXVI 834885 . T C 3227.04 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.80;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3260,387,0 chrXVI 834906 . G T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.62;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,177:182:99:3571,396,0 chrXVI 835188 . A G 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.1336;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=0.092;QD=14.27;ReadPosRankSum=2.303;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:989,117,0 chrXVI 835195 . G A 875 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=13.89;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:908,102,0 chrXVI 835213 . G A 934 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=15.83;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:967,108,0 chrXVI 835242 . T G 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=77;Dels=0.00;FS=2.875;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.217;QD=16.60;ReadPosRankSum=2.255;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:1311,150,0 chrXVI 835306 . C T 1409 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.68;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1442,159,0 chrXVI 835446 . A T 2437 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.87;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2470,276,0 chrXVI 835496 . C A 2120 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.56;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2153,246,0 chrXVI 836893 . T G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3634,426,0 chrXVI 837009 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.53;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3765,414,0 chrXVI 837309 . T C 3113 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.2109;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.08;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3146,360,0 chrXVI 837416 . A C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.584;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.632;QD=22.62;ReadPosRankSum=2.405;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2544,294,0 chrXVI 837439 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=20.75;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1859,210,0 chrXVI 837468 . T A 1364 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=20.36;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1397,153,0 chrXVI 837469 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.04;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1396,159,0 chrXVI 837622 . G A 515 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=16.61;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:60:548,60,0 chrXVI 837888 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9822;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=22.29;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2195,243,0 chrXVI 838043 . G A 1087 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=23.13;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1120,123,0 chrXVI 838274 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=5;QD=2.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrXVI 838970 . T A 1193 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.662;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=0;MQRankSum=-2.902;QD=23.39;ReadPosRankSum=2.862;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,48:51:99:1226,138,0 chrXVI 839118 . C T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.77;MQ0=0;QD=0.19;SB=-5.577e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:6:46,6,0 chrXVI 839142 . T A 824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;MQRankSum=-2.183;QD=6.87;ReadPosRankSum=2.409;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:96:857,96,0 chrXVI 839169 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=11.24;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:1854,219,0 chrXVI 839190 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=14.67;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2322,276,0 chrXVI 839240 . T C 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;MQRankSum=-0.662;QD=17.27;ReadPosRankSum=1.707;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2434,279,0 chrXVI 839265 . A G 2047 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=15.75;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2080,243,0 chrXVI 839292 . A G 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=3.270;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;MQRankSum=-0.176;QD=11.55;ReadPosRankSum=1.682;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,137:141:99:1661,201,0 chrXVI 839313 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=12.51;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1935,222,0 chrXVI 839436 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.65;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3659,423,0 chrXVI 839499 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=139;Dels=0.00;FS=7.052;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.795;QD=20.37;ReadPosRankSum=2.344;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2865,333,0 chrXVI 839670 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=132;Dels=0.00;FS=2.693;HaplotypeScore=8.2511;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.307;QD=17.46;ReadPosRankSum=2.394;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2338,270,0 chrXVI 839916 . G T 2944 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.53;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2977,330,0 chrXVI 840103 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.74;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3096,342,0 chrXVI 840263 . T A 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=154;Dels=0.00;FS=9.464;HaplotypeScore=8.8863;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.497;QD=20.79;ReadPosRankSum=2.928;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3234,354,0 chrXVI 840416 . C G 3077 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.30;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3110,354,0 chrXVI 840482 . C G 2605 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=18.74;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2638,300,0 chrXVI 840488 . T C 2435 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=17.52;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2468,297,0 chrXVI 840637 . T A 229.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.525;DP=122;Dels=0.00;FS=14.430;HaplotypeScore=203.4118;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=0;MQRankSum=-0.381;QD=1.88;ReadPosRankSum=-3.514;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:92,30:122:99:259,0,147 chrXVI 840642 . T A 283.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;DP=119;Dels=0.00;FS=5.388;HaplotypeScore=89.4848;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=0.256;QD=2.38;ReadPosRankSum=4.785;SB=-8.590e+02 GT:AD:DP:GQ:PL 0/1:29,90:119:84:313,0,84 chrXVI 841238 . G T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.81;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4218,462,0 chrXVI 841449 . T C 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=3.237;HaplotypeScore=16.6550;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.576;QD=21.51;ReadPosRankSum=1.654;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3850,438,0 chrXVI 841490 . T C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=153;Dels=0.00;FS=6.107;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.743;QD=19.79;ReadPosRankSum=2.888;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3061,360,0 chrXVI 841571 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=8.665;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.554;QD=20.15;ReadPosRankSum=2.417;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3075,363,0 chrXVI 841646 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.4603;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.66;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:4056,456,0 chrXVI 841702 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.664;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.192;QD=21.23;ReadPosRankSum=1.695;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3948,473,0 chrXVI 842073 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.2518;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.56;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3536,405,0 chrXVI 842086 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.9182;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.69;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3807,426,0 chrXVI 842864 . A T 2773 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2806,312,0 chrXVI 842931 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1717,192,0 chrXVI 843042 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3151,348,0 chrXVI 843391 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.358;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.444;QD=19.27;ReadPosRankSum=1.710;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3058,360,0 chrXVI 843720 . C T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.88;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4298,486,0 chrXVI 843861 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.25;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2838,306,0 chrXVI 843881 . T C 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=138;Dels=0.00;FS=7.131;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.134;QD=20.33;ReadPosRankSum=2.414;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2838,321,0 chrXVI 844001 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.33;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2005,222,0 chrXVI 844011 . T C 1680 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.09;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1713,204,0 chrXVI 844046 . T C 1666 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.18;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1699,207,0 chrXVI 844058 . T C 1790 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.90;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1823,207,0 chrXVI 850463 . A C 500 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=0;QD=21.74;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:60:533,60,0 chrXVI 850487 . T G 129.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=16.14;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:162,18,0 chrXVI 850488 . G A 135.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;QD=19.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:168,18,0 chrXVI 850500 . T A 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;DP=10;Dels=0.00;FS=6.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.59;MQ0=0;MQRankSum=-1.098;QD=1.91;ReadPosRankSum=-0.336;SB=-1.050e+01 GT:AD:DP:GQ:PL 0/1:5,5:10:49:49,0,86 chrXVI 850858 . A C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=6;QD=2.53;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:6,3:9:6:54,6,0 chrXVI 856886 . A T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8227;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=1;MQRankSum=2.274;QD=0.33;ReadPosRankSum=2.333;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:41,2:43:41:44,0,41 chrXVI 856890 . A C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.172;DP=42;Dels=0.00;FS=6.905;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;MQRankSum=-0.635;QD=0.54;ReadPosRankSum=-0.977;SB=-5.577e+01 GT:AD:DP:GQ:PL 1/1:3,39:42:6:54,6,0 chrXVI 857345 . T A 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.405;QD=21.88;ReadPosRankSum=1.601;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2352,261,0 chrXVI 858788 . T C 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=178;Dels=0.00;FS=3.479;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.063;QD=22.18;ReadPosRankSum=1.693;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3948,459,0 chrXVI 859250 . A G 4433.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.15;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4433,522,0 chrXVI 859983 . A G 336.12 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.365;DP=60;Dels=0.00;FS=114.287;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;MQRankSum=-0.334;QD=5.60;ReadPosRankSum=4.910;SB=-2.135e+00 GT:AD:DP:GQ:PL 1/1:41,19:60:5:367,5,0 chrXVI 859985 . A T 338.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;DP=60;Dels=0.00;FS=99.870;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=34.49;MQ0=0;MQRankSum=-2.576;QD=5.63;ReadPosRankSum=-4.331;SB=1.07 GT:AD:DP:GQ:PL 0/1:43,17:60:17:368,0,17 chrXVI 859988 . T A 345.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DP=59;Dels=0.00;FS=105.076;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=33.89;MQ0=0;MQRankSum=-1.486;QD=5.85;ReadPosRankSum=-5.808;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:41,17:59:99:375,0,102 chrXVI 860143 . T C 1872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=84;Dels=0.00;FS=5.331;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=0.121;QD=22.29;ReadPosRankSum=2.917;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1905,222,0 chrXVI 860233 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=112;Dels=0.00;FS=2.743;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.088;QD=17.62;ReadPosRankSum=2.362;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2006,231,0 chrXVI 860239 . T A 2183 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8016;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.98;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2216,246,0 chrXVI 860540 . A G 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.270;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.342;QD=22.67;ReadPosRankSum=1.712;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3944,444,0 chrXVI 860653 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=3.3380;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=14.16;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:3654,405,0 chrXVI 860656 . A G 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=265;Dels=0.00;FS=8.816;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=-0.869;QD=13.11;ReadPosRankSum=2.422;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:2,262:265:99:3474,396,0 chrXVI 861771 . A G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.613;QD=22.76;ReadPosRankSum=1.712;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4006,450,0 chrXVI 861839 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.64;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3690,420,0 chrXVI 863244 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.640;QD=22.33;ReadPosRankSum=1.714;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4221,495,0 chrXVI 863372 . G A 5037.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5037,564,0 chrXVI 863552 . T C 4531.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4531,528,0 chrXVI 863733 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3930,444,0 chrXVI 863780 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=7.216;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.161;QD=21.76;ReadPosRankSum=2.404;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3504,419,0 chrXVI 863829 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.67;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3716,405,0 chrXVI 864249 . C G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.35;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3352,401,0 chrXVI 864283 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3985,447,0 chrXVI 864677 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.62;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2387,261,0 chrXVI 864798 . T C 2458 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0080;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.48;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2491,285,0 chrXVI 864815 . T C 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=112;Dels=0.00;FS=3.037;HaplotypeScore=8.7085;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.802;QD=18.33;ReadPosRankSum=2.406;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2086,240,0 chrXVI 864893 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.00;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3003,330,0 chrXVI 864906 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=3.936;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.172;QD=20.91;ReadPosRankSum=1.686;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3191,366,0 chrXVI 865007 . A T 2864 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.03;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2897,327,0 chrXVI 865226 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3382,381,0 chrXVI 865451 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.0656;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.90;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3532,387,0 chrXVI 865498 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.5313;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.48;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4113,453,0 chrXVI 865918 . T A 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.892;DP=106;Dels=0.00;FS=2.670;HaplotypeScore=7.4470;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.312;QD=23.64;ReadPosRankSum=1.916;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2539,276,0 chrXVI 865958 . A G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.554;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.698;QD=21.78;ReadPosRankSum=1.698;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2276,255,0 chrXVI 866135 . T C 3184 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3217,363,0 chrXVI 866267 . C G 2098 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2131,240,0 chrXVI 866381 . T C 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=135;Dels=0.00;FS=6.601;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=2.096;QD=19.90;ReadPosRankSum=2.375;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,130:135:99:2720,312,0 chrXVI 866489 . T C 2279 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.91;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2312,273,0 chrXVI 866667 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.732;QD=20.31;ReadPosRankSum=1.672;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2369,273,0 chrXVI 866670 . A G 2133 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.04;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2166,252,0 chrXVI 866682 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=20.63;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2240,246,0 chrXVI 867792 . A C 2443 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.05;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2476,285,0 chrXVI 868341 . A T 804 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=14.11;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:93:837,93,0 chrXVI 868344 . T C 725 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=13.94;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:87:758,87,0 chrXVI 868671 . T C 2458 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2491,276,0 chrXVI 869017 . G A 2532 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.9877;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.48;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2565,285,0 chrXVI 869020 . A G 2321 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.6301;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=17.45;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2354,276,0 chrXVI 869023 . A G 2291 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=135;Dels=0.00;FS=9.225;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.072;QD=16.97;ReadPosRankSum=3.341;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:4,130:135:99:2324,270,0 chrXVI 869167 . G A 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=132;Dels=0.00;FS=6.124;HaplotypeScore=15.0510;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.649;QD=20.95;ReadPosRankSum=0.242;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,125:132:99:2798,293,0 chrXVI 869386 . A G 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=15.2714;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.990;QD=17.64;ReadPosRankSum=1.705;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2256,270,0 chrXVI 870043 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9907;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.04;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3182,354,0 chrXVI 870052 . T C 2905 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.1212;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.18;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2938,336,0 chrXVI 870274 . T C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=116;Dels=0.00;FS=6.773;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.011;QD=20.97;ReadPosRankSum=2.386;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2466,282,0 chrXVI 870491 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3668,408,0 chrXVI 870525 . G C 2956 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.4859;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.67;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,138:143:99:2989,354,0 chrXVI 870673 . C G 3935.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.98;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3935,468,0 chrXVI 870746 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=18.5426;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.646;QD=20.40;ReadPosRankSum=1.712;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3508,408,0 chrXVI 870906 . G T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3793,432,0 chrXVI 871047 . A G 3114 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.41;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3147,354,0 chrXVI 871215 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.79;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2881,327,0 chrXVI 871222 . G T 2823 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.76;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2856,312,0 chrXVI 871356 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.262;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.366;QD=20.89;ReadPosRankSum=1.683;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3000,357,0 chrXVI 871361 . T C 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=6.603;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-1.413;QD=20.84;ReadPosRankSum=2.416;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3096,354,0 chrXVI 871536 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.6749;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.22;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3529,399,0 chrXVI 871617 . A T 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=1.423;QD=21.74;ReadPosRankSum=1.578;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2794,300,0 chrXVI 871620 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.71;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2704,297,0 chrXVI 871663 . A G 2595 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.66;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2628,306,0 chrXVI 871689 . A C 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.760;QD=21.09;ReadPosRankSum=1.702;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2458,285,0 chrXVI 871726 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.94;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2786,309,0 chrXVI 871860 . T C 2196 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.74;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2229,252,0 chrXVI 872131 . C A 2174 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.41;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2207,249,0 chrXVI 872154 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.99;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2300,255,0 chrXVI 872172 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.21;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2600,294,0 chrXVI 872338 . T A 2204 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.04;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2237,243,0 chrXVI 872691 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.34;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2289,264,0 chrXVI 872872 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2834,321,0 chrXVI 872915 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7747;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.419;QD=21.96;ReadPosRankSum=1.704;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2778,318,0 chrXVI 872987 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.88;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3296,357,0 chrXVI 873070 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=135;Dels=0.00;FS=6.118;HaplotypeScore=11.3639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.029;QD=20.74;ReadPosRankSum=2.377;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2833,336,0 chrXVI 873134 . T A 2465 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.04;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2498,276,0 chrXVI 873246 . A G 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.978;QD=22.56;ReadPosRankSum=1.676;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2830,324,0 chrXVI 873345 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.00;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1903,216,0 chrXVI 873415 . A T 1659 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.99;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1692,192,0 chrXVI 873426 . T C 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.267;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.816;QD=18.64;ReadPosRankSum=1.692;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1673,189,0 chrXVI 873450 . A C 1831 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.95;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1864,216,0 chrXVI 873648 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.40;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2206,252,0 chrXVI 873684 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.66;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1810,219,0 chrXVI 873767 . T C 2332 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.29;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2365,270,0 chrXVI 874001 . A T 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=3.780;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-0.303;QD=23.94;ReadPosRankSum=1.710;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3830,414,0 chrXVI 874128 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.234;QD=21.69;ReadPosRankSum=1.672;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3817,435,0 chrXVI 874146 . A C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.431;QD=21.43;ReadPosRankSum=1.713;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3878,444,0 chrXVI 874409 . G A 4505.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.9711;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.64;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4505,492,0 chrXVI 874530 . C A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.5227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.23;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3277,372,0 chrXVI 874669 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.6558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3830,423,0 chrXVI 874996 . A G 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.301;QD=23.10;ReadPosRankSum=1.483;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3858,453,0 chrXVI 875078 . T G 2453 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8404;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.31;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2486,285,0 chrXVI 876278 . T A 456 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.80;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:54:489,54,0 chrXVI 876719 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;QD=22.88;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3122,345,0 chrXVI 876810 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=17.86;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3015,330,0 chrXVI 876811 . T C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=-0.125;QD=17.26;ReadPosRankSum=1.711;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2898,333,0 chrXVI 876914 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=147;Dels=0.00;FS=3.033;HaplotypeScore=9.7766;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.076;QD=19.38;ReadPosRankSum=2.365;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2882,330,0 chrXVI 877898 . C T 2222 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2255,255,0 chrXVI 877997 . A G 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.996;QD=22.70;ReadPosRankSum=1.705;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2916,327,0 chrXVI 878300 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=203;Dels=0.00;FS=4.814;HaplotypeScore=12.1519;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.418;QD=20.97;ReadPosRankSum=1.698;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4257,489,0 chrXVI 878420 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.90;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2729,306,0 chrXVI 878600 . T A 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=72;Dels=0.00;FS=2.764;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.400;QD=16.36;ReadPosRankSum=2.381;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1211,138,0 chrXVI 878637 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=18.89;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1620,183,0 chrXVI 878899 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.37;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3289,375,0 chrXVI 878986 . T G 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=3.468;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.694;QD=22.16;ReadPosRankSum=1.694;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3988,459,0 chrXVI 879007 . G T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.33;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4198,459,0 chrXVI 879511 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8662;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=1.116;QD=19.71;ReadPosRankSum=0.903;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3268,363,0 chrXVI 879520 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=19.87;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3192,348,0 chrXVI 879550 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.39;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3136,345,0 chrXVI 879742 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.72;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3839,435,0 chrXVI 879779 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=176;Dels=0.00;FS=11.864;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=2.581;QD=23.13;ReadPosRankSum=2.857;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:4071,462,0 chrXVI 880014 . A G 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=1.040;QD=20.30;ReadPosRankSum=2.897;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2632,303,0 chrXVI 880157 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=21.48;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1794,204,0 chrXVI 880188 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=17.65;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:986,111,0 chrXVI 880193 . A G 868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;MQRankSum=-1.308;QD=17.71;ReadPosRankSum=1.591;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:901,105,0 chrXVI 880220 . A G 632 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;QD=17.56;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:665,78,0 chrXVI 880238 . T G 543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=35.5496;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;MQRankSum=-1.644;QD=13.57;ReadPosRankSum=1.644;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,38:40:66:576,66,0 chrXVI 880240 . C T 602 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=34.7610;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=15.44;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:635,69,0 chrXVI 880262 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;QD=17.20;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:962,108,0 chrXVI 880373 . A C 717 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=2;QD=17.07;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:750,90,0 chrXVI 880381 . A G 590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=38;Dels=0.00;FS=7.202;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=2;MQRankSum=-1.278;QD=15.53;ReadPosRankSum=2.244;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:75:623,75,0 chrXVI 880390 . G T 519 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=1;QD=15.26;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:552,66,0 chrXVI 880404 . G C 152.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=12.67;SB=-1.149e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:24:185,24,0 chrXVI 880421 . A T 42.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.14;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:75,9,0 chrXVI 880427 . C T 87.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;QD=5.82;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:120,15,0 chrXVI 880461 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=21.25;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1202,132,0 chrXVI 880514 . A T 1442 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;QD=18.97;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1475,171,0 chrXVI 880641 . A C 267 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=2;QD=8.09;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,31:33:36:300,36,0 chrXVI 880654 . G A 157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=31.49;MQ0=2;MQRankSum=-1.681;QD=4.03;ReadPosRankSum=-2.302;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:11,27:39:99:187,0,179 chrXVI 880694 . C G 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=40.37;MQ0=0;MQRankSum=-0.072;QD=0.87;ReadPosRankSum=-2.277;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,6:53:76:76,0,478 chrXVI 880695 . A C 454.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=41.24;MQ0=0;MQRankSum=-0.042;QD=8.25;ReadPosRankSum=2.288;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:6,47:55:80:484,0,80 chrXVI 880794 . C T 831 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.89;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:864,96,0 chrXVI 880815 . A C 572 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=15.89;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:69:605,69,0 chrXVI 880817 . G A 568 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=16.23;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:66:601,66,0 chrXVI 880820 . A G 548 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=13.37;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:66:581,66,0 chrXVI 880861 . T C 918 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=13.50;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:951,108,0 chrXVI 880877 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;QD=15.77;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1342,150,0 chrXVI 880884 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=14.68;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1310,150,0 chrXVI 880931 . T A 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.226;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.185;QD=19.34;ReadPosRankSum=1.698;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2025,225,0 chrXVI 880945 . C A 1935 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.79;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1968,219,0 chrXVI 881165 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3707;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.88;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3500,393,0 chrXVI 881834 . C A 5010.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.3180;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.47;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:5010,555,0 chrXVI 882337 . C A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2997;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=22.63;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4073,453,0 chrXVI 882348 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.4799;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;MQRankSum=-1.689;QD=23.34;ReadPosRankSum=1.710;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3735,432,0 chrXVI 882405 . T C 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.136;HaplotypeScore=122.8334;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;MQRankSum=1.405;QD=22.25;ReadPosRankSum=1.705;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2881,327,0 chrXVI 882467 . G C 2268 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=11.5435;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.43;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2301,273,0 chrXVI 882493 . A G 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=109;Dels=0.00;FS=9.005;HaplotypeScore=3.0897;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=0.105;QD=17.25;ReadPosRankSum=3.376;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:4,105:109:99:1913,234,0 chrXVI 882509 . T A 1942 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=19.62;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1975,219,0 chrXVI 882549 . A T 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0823;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;MQRankSum=-1.408;QD=14.07;ReadPosRankSum=1.667;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1539,183,0 chrXVI 882555 . T C 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=4.002;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;MQRankSum=1.025;QD=13.67;ReadPosRankSum=1.697;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,97:101:99:1414,174,0 chrXVI 882567 . A G 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=2.694;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;MQRankSum=-2.398;QD=13.61;ReadPosRankSum=2.398;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1340,159,0 chrXVI 882576 . C T 1290 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=14.33;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1323,150,0 chrXVI 882583 . T C 1212 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=13.93;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1245,144,0 chrXVI 882586 . C G 1161 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=13.50;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1194,135,0 chrXVI 882590 . C T 1109 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=13.20;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1142,129,0 chrXVI 882596 . A G 1016 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=12.10;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1049,123,0 chrXVI 882608 . T C 795 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=11.52;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:828,102,0 chrXVI 882609 . C G 829 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=12.01;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:862,102,0 chrXVI 882632 . A C 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;MQRankSum=1.391;QD=13.73;ReadPosRankSum=1.683;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1008,114,0 chrXVI 882654 . C T 1015 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.86;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1048,114,0 chrXVI 882679 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=19.33;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1676,192,0 chrXVI 882721 . T C 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.102;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;MQRankSum=-1.083;QD=20.67;ReadPosRankSum=1.660;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2017,231,0 chrXVI 882746 . C T 2019 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=19.60;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2052,237,0 chrXVI 882768 . G T 1684 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;QD=17.01;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1717,195,0 chrXVI 882787 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=19.27;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2423,270,0 chrXVI 882893 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=17.13;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2037,222,0 chrXVI 882903 . T G 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=107;Dels=0.00;FS=2.793;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;MQRankSum=0.174;QD=15.51;ReadPosRankSum=2.334;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:1693,201,0 chrXVI 882906 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;MQRankSum=-0.521;QD=15.29;ReadPosRankSum=1.631;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1608,186,0 chrXVI 882915 . A T 1442 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=13.87;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1475,165,0 chrXVI 882932 . T A 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.299;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=-0.874;QD=14.75;ReadPosRankSum=1.700;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1641,183,0 chrXVI 882949 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=17.19;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1924,213,0 chrXVI 883015 . A C 3148 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=21.56;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3181,360,0 chrXVI 883039 . G A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=22.28;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3297,369,0 chrXVI 883117 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.89;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2289,258,0 chrXVI 883214 . G T 2687 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.88;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2720,300,0 chrXVI 883313 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.39;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2406,261,0 chrXVI 883526 . C G 2539 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.70;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2572,300,0 chrXVI 883797 . G C 1551 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.96;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1584,186,0 chrXVI 883913 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.89;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2208,246,0 chrXVI 883967 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=25.14;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2421,261,0 chrXVI 883981 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.03;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2748,300,0 chrXVI 884196 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.84;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2202,243,0 chrXVI 884218 . T A 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.115;QD=23.74;ReadPosRankSum=1.698;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2431,264,0 chrXVI 884263 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.70;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2420,264,0 chrXVI 884283 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.1113;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.86;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2350,255,0 chrXVI 884616 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2877,318,0 chrXVI 884655 . T G 2521 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=10.1429;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.01;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2554,308,0 chrXVI 884709 . C T 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.159;QD=21.81;ReadPosRankSum=-1.654;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2955,321,0 chrXVI 884724 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.27;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2770,315,0 chrXVI 885171 . T C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=156;Dels=0.00;FS=5.268;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=0.671;QD=18.18;ReadPosRankSum=3.312;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:4,151:156:99:2869,336,0 chrXVI 885178 . A G 2719 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.66;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2752,318,0 chrXVI 885190 . A G 2685 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=16.57;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2718,306,0 chrXVI 885210 . A C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=169;Dels=0.00;FS=12.174;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-2.101;QD=16.86;ReadPosRankSum=2.959;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:2882,324,0 chrXVI 885444 . T G 2696 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6753;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.27;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2729,327,0 chrXVI 885455 . A C 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=137;Dels=0.00;FS=6.721;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=1.636;QD=20.39;ReadPosRankSum=2.413;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2826,321,0 chrXVI 885683 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.8072;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.34;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4333,477,0 chrXVI 885979 . T A 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.087;DP=162;Dels=0.00;FS=2.061;HaplotypeScore=17.0019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.295;QD=22.35;ReadPosRankSum=3.295;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:4,156:162:99:3621,408,0 chrXVI 886611 . A G 2036 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2069,237,0 chrXVI 886776 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=162;Dels=0.00;FS=2.811;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.763;QD=19.75;ReadPosRankSum=2.404;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3233,363,0 chrXVI 886812 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.42;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3172,357,0 chrXVI 887016 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.53;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2974,330,0 chrXVI 887070 . T C 2450 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1096;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.76;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2483,285,0 chrXVI 887343 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.70;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2724,309,0 chrXVI 887394 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.26;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3153,351,0 chrXVI 887495 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=16.18;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2055,228,0 chrXVI 887502 . G T 1990 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=15.79;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2023,222,0 chrXVI 887552 . T A 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6063;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.259;QD=17.53;ReadPosRankSum=1.678;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2259,261,0 chrXVI 887709 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.43;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3678,420,0 chrXVI 888159 . C G 3590.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.87;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3590,408,0 chrXVI 888231 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.53;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4348,474,0 chrXVI 888239 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7527;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-1.349;QD=21.34;ReadPosRankSum=1.331;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4075,435,0 chrXVI 888536 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.00;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4278,474,0 chrXVI 888652 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.69;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3903,447,0 chrXVI 888868 . A T 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-1.670;QD=21.81;ReadPosRankSum=1.711;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3643,411,0 chrXVI 888934 . T C 2599 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.63;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2632,300,0 chrXVI 888938 . A G 2237 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-1.459;QD=19.62;ReadPosRankSum=1.702;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2270,261,0 chrXVI 888942 . T C 2089 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=18.32;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2122,252,0 chrXVI 888950 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.48;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2351,258,0 chrXVI 889084 . A C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.286;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.959;QD=22.70;ReadPosRankSum=1.679;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3007,342,0 chrXVI 889176 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.43;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2947,324,0 chrXVI 889177 . A C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=3.701;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.535;QD=19.81;ReadPosRankSum=1.656;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:2786,327,0 chrXVI 889287 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.96;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3734,432,0 chrXVI 889429 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.28;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4000,465,0 chrXVI 889543 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=16.5277;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.110;QD=22.55;ReadPosRankSum=1.666;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3585,408,0 chrXVI 889589 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.08;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3947,435,0 chrXVI 889595 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.17;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3916,432,0 chrXVI 889681 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.99;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3609,408,0 chrXVI 889729 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.7912;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.72;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3888,464,0 chrXVI 889742 . A G 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=195;Dels=0.00;FS=7.197;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.563;QD=22.57;ReadPosRankSum=2.399;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4402,504,0 chrXVI 890080 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.63;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2859,324,0 chrXVI 890346 . T A 3136 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.19;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3169,357,0 chrXVI 890467 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.41;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3354,366,0 chrXVI 890560 . A C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=3.7365;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.408;QD=19.86;ReadPosRankSum=1.691;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3396,396,0 chrXVI 890563 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.190;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.891;QD=20.03;ReadPosRankSum=1.692;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3505,402,0 chrXVI 890693 . T G 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=1.107;QD=19.58;ReadPosRankSum=1.679;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3838,432,0 chrXVI 890698 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=194;Dels=0.00;FS=11.153;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.881;QD=18.71;ReadPosRankSum=2.840;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:3629,411,0 chrXVI 891130 . A C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=3.285;HaplotypeScore=5.1246;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.591;QD=22.28;ReadPosRankSum=1.685;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3298,369,0 chrXVI 891169 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.60;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2880,312,0 chrXVI 891194 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.05;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3010,345,0 chrXVI 891335 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.17;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4064,482,0 chrXVI 891344 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.88;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4200,483,0 chrXVI 891421 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.62;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3361,384,0 chrXVI 891466 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.7030;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.37;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3981,450,0 chrXVI 891619 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.937;DP=195;Dels=0.00;FS=21.360;HaplotypeScore=16.4371;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.340;QD=22.07;ReadPosRankSum=2.952;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:6,186:195:99:4304,486,0 chrXVI 891701 . G A 4735.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1172;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.82;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4735,519,0 chrXVI 892106 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=16.5854;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.51;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2622,285,0 chrXVI 892211 . A C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=5.171;HaplotypeScore=9.3321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.901;QD=23.38;ReadPosRankSum=1.704;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2955,330,0 chrXVI 892306 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.47;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2615,300,0 chrXVI 892352 . T A 2683 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.74;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2716,309,0 chrXVI 892406 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.43;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4068,447,0 chrXVI 892709 . T A 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.002;DP=121;Dels=0.00;FS=2.916;HaplotypeScore=14.3830;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.352;QD=22.31;ReadPosRankSum=2.409;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2733,303,0 chrXVI 892994 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.62;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3642,402,0 chrXVI 893092 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.64;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3925,426,0 chrXVI 893447 . C G 4293.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.57;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4293,489,0 chrXVI 893559 . C G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.1661;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.05;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3903,450,0 chrXVI 893672 . T C 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=5.283;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-1.443;QD=20.82;ReadPosRankSum=1.700;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2282,264,0 chrXVI 893675 . T C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=5.307;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.732;QD=21.28;ReadPosRankSum=1.701;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2416,270,0 chrXVI 893806 . T G 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.696;QD=20.61;ReadPosRankSum=1.696;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2032,234,0 chrXVI 893821 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=5.8450;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.29;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2062,225,0 chrXVI 893822 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=5.8450;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.14;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2047,225,0 chrXVI 893913 . C T 1204 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.07;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1237,135,0 chrXVI 893914 . T C 1233 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=19.89;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1266,147,0 chrXVI 894005 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.108;QD=22.72;ReadPosRankSum=1.705;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2941,330,0 chrXVI 894042 . G T 2489 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.42;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2522,276,0 chrXVI 894150 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.06;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2202,240,0 chrXVI 894151 . C T 2182 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.98;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2215,240,0 chrXVI 894337 . T G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=141;Dels=0.00;FS=2.984;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.378;QD=21.30;ReadPosRankSum=2.379;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3036,348,0 chrXVI 894373 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=155;Dels=0.00;FS=2.907;HaplotypeScore=7.8499;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.166;QD=22.51;ReadPosRankSum=2.418;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3489,396,0 chrXVI 894511 . T C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.462;QD=22.57;ReadPosRankSum=1.658;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3216,381,0 chrXVI 894610 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.03;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3392,399,0 chrXVI 894693 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.59;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3060,333,0 chrXVI 894711 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.71;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2655,291,0 chrXVI 894844 . T A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.06;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3489,387,0 chrXVI 895022 . C G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.16;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3249,387,0 chrXVI 895080 . A C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=141;Dels=0.00;FS=2.859;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.602;QD=19.59;ReadPosRankSum=2.380;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2795,333,0 chrXVI 895084 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.40;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2901,321,0 chrXVI 895354 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.56;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4642,534,0 chrXVI 895642 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=3.605;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.692;QD=22.75;ReadPosRankSum=1.672;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3936,447,0 chrXVI 895702 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.64;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3509,393,0 chrXVI 895738 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.89;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3142,348,0 chrXVI 895917 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=131;Dels=0.00;FS=2.785;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.369;QD=21.90;ReadPosRankSum=2.355;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2902,336,0 chrXVI 896116 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.08;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3716,411,0 chrXVI 896257 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.37;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2864,327,0 chrXVI 896267 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.911;QD=19.57;ReadPosRankSum=1.706;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2675,315,0 chrXVI 896434 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.2091;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.18;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2617,297,0 chrXVI 896467 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.26;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2903,327,0 chrXVI 896539 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=2.965;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.508;QD=22.73;ReadPosRankSum=2.354;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3500,399,0 chrXVI 896575 . A G 2844 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.07;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2877,327,0 chrXVI 896727 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.98;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4261,462,0 chrXVI 896834 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=133;Dels=0.00;FS=2.588;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-1.705;QD=19.86;ReadPosRankSum=2.947;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2674,318,0 chrXVI 896848 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=19.98;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2650,303,0 chrXVI 896854 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.18;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2616,288,0 chrXVI 896989 . A T 1530 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.86;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1563,168,0 chrXVI 897258 . C A 1281 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1314,153,0 chrXVI 897538 . T C 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.587;DP=111;Dels=0.00;FS=12.438;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.732;QD=20.45;ReadPosRankSum=3.702;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:5,105:111:99:2303,264,0 chrXVI 897661 . T C 2157 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.16;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2190,252,0 chrXVI 898057 . A C 6169.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=11.2183;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.85;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6169,714,0 chrXVI 898210 . A G 6525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=298;Dels=0.00;FS=3.012;HaplotypeScore=13.2059;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.037;QD=21.90;ReadPosRankSum=2.342;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:2,296:298:99:6525,767,0 chrXVI 898411 . C T 5859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=248;Dels=0.00;FS=3.191;HaplotypeScore=12.1971;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.718;QD=23.63;ReadPosRankSum=0.521;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5859,639,0 chrXVI 898463 . C A 5164.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.43;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5164,573,0 chrXVI 898746 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.4442;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.04;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3576,408,0 chrXVI 898897 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.680;HaplotypeScore=11.8968;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.604;QD=24.54;ReadPosRankSum=0.192;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4688,513,0 chrXVI 899206 . G A 6048.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=16.2513;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.53;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6048,672,0 chrXVI 899416 . G A 6001.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.7168;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.53;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6001,657,0 chrXVI 899499 . A C 7243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=333;Dels=0.00;FS=4.006;HaplotypeScore=9.5196;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.115;QD=21.75;ReadPosRankSum=1.669;SB=-3.252e+03 GT:AD:DP:GQ:PL 1/1:1,331:333:99:7243,843,0 chrXVI 899569 . C G 4580.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.4199;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.08;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:4580,542,0 chrXVI 899590 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=209;Dels=0.00;FS=2.561;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.024;QD=18.12;ReadPosRankSum=2.909;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:3787,441,0 chrXVI 899602 . A G 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.605;QD=17.08;ReadPosRankSum=2.382;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:3706,426,0 chrXVI 899969 . G T 5587.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=16.4023;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=24.50;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5587,612,0 chrXVI 900008 . G A 6228.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.33;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6228,681,0 chrXVI 900028 . G T 5372.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.91;SB=-3.423e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:5372,585,0 chrXVI 900042 . T C 5669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;DP=343;Dels=0.00;FS=7.935;HaplotypeScore=26.0492;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-1.502;QD=16.53;ReadPosRankSum=3.796;SB=-3.396e+03 GT:AD:DP:GQ:PL 1/1:5,338:343:99:5669,654,0 chrXVI 900148 . C A 8002.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.73;SB=-3.949e+03 GT:AD:DP:GQ:PL 1/1:0,351:352:99:8002,877,0 chrXVI 900172 . T C 6377.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=16.0556;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.48;SB=-3.896e+03 GT:AD:DP:GQ:PL 1/1:0,344:345:99:6377,752,0 chrXVI 900271 . T C 7017.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=384;Dels=0.00;FS=4.283;HaplotypeScore=21.2631;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.871;QD=18.27;ReadPosRankSum=1.705;SB=-3.530e+03 GT:AD:DP:GQ:PL 1/1:1,377:384:99:7017,824,0 chrXVI 900385 . G C 4633.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.1379;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.80;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,229:234:99:4633,522,0 chrXVI 900464 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.4321;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.68;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3549,396,0 chrXVI 900472 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.95;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3506,381,0 chrXVI 900592 . A C 2869 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.87;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2902,330,0 chrXVI 900602 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.14;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3141,342,0 chrXVI 900649 . C A 3155 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.20;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3188,345,0 chrXVI 900811 . A G 6590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=311;Dels=0.00;FS=5.504;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.207;QD=21.19;ReadPosRankSum=1.710;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,308:311:99:6590,744,0 chrXVI 900827 . T C 6644.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=26.5800;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.13;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,329:330:99:6644,765,0 chrXVI 901087 . T C 6378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=340;Dels=0.00;FS=5.302;HaplotypeScore=23.1717;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.976;QD=18.76;ReadPosRankSum=1.722;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,338:340:99:6378,729,0 chrXVI 901096 . T C 6102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=321;Dels=0.00;FS=15.552;HaplotypeScore=8.1748;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.603;QD=19.01;ReadPosRankSum=2.941;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:3,318:321:99:6102,690,0 chrXVI 901144 . C T 6489.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=30.1069;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.18;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:0,357:357:99:6489,741,0 chrXVI 901264 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.9891;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.61;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3586,405,0 chrXVI 901342 . A G 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=217;Dels=0.00;FS=6.244;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.047;QD=22.77;ReadPosRankSum=2.416;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4941,558,0 chrXVI 901564 . G T 2935 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.52;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2968,330,0 chrXVI 901666 . T C 2287 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3017;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=19.22;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2320,267,0 chrXVI 901669 . G C 2254 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.48;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2287,270,0 chrXVI 901708 . A C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=7.849;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=-0.766;QD=16.64;ReadPosRankSum=2.400;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1664,192,0 chrXVI 901710 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=16.66;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1616,195,0 chrXVI 901725 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=17.31;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1504,162,0 chrXVI 901786 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=17.19;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1838,219,0 chrXVI 902268 . G C 4008.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.65;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4008,462,0 chrXVI 902643 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.64;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3306,378,0 chrXVI 902706 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.693;DP=155;Dels=0.00;FS=5.793;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-0.549;QD=17.25;ReadPosRankSum=2.955;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:2707,321,0 chrXVI 902709 . A G 2641 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=18.09;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2674,303,0 chrXVI 902772 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=16.85;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2122,246,0 chrXVI 902775 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.07;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2082,228,0 chrXVI 902931 . T C 4319.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.99;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4319,492,0 chrXVI 902997 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=155;Dels=0.00;FS=3.923;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.619;QD=23.46;ReadPosRankSum=1.709;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3636,417,0 chrXVI 903111 . T A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.53;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4439,486,0 chrXVI 903117 . C T 4293.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.02;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4293,474,0 chrXVI 903146 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.3687;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.19;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3594,405,0 chrXVI 903285 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=196;Dels=0.00;FS=6.223;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.971;QD=20.51;ReadPosRankSum=2.425;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4020,485,0 chrXVI 903372 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=3.263;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.212;QD=20.62;ReadPosRankSum=1.716;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4412,527,0 chrXVI 903396 . T C 4988.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.37;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4988,567,0 chrXVI 903504 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.075;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=24.7511;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=2.381;QD=20.04;ReadPosRankSum=1.722;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3647,400,0 chrXVI 903807 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3009,330,0 chrXVI 903945 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7413;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.381;QD=21.45;ReadPosRankSum=1.710;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3453,396,0 chrXVI 904122 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.83;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2887,321,0 chrXVI 904203 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.414;QD=17.76;ReadPosRankSum=1.695;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,184:189:99:3356,396,0 chrXVI 904215 . G T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.34;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3500,384,0 chrXVI 904228 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.70;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3254,357,0 chrXVI 904338 . C T 4712.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.92;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4712,513,0 chrXVI 904458 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.85;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3450,375,0 chrXVI 904509 . T A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.65;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3330,369,0 chrXVI 904707 . A T 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=4.393;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.067;QD=23.59;ReadPosRankSum=1.662;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2368,264,0 chrXVI 904893 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.7374;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.43;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3903,441,0 chrXVI 905056 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.3072;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.92;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3704,423,0 chrXVI 905208 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.1603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3810,420,0 chrXVI 905538 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9229;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.69;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3318,366,0 chrXVI 905582 . G A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.5989;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.87;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3454,381,0 chrXVI 905685 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.316;QD=22.53;ReadPosRankSum=1.709;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3380,393,0 chrXVI 905754 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.90;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3618,429,0 chrXVI 905910 . A C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=131;Dels=0.00;FS=3.012;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.077;QD=20.38;ReadPosRankSum=2.373;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2703,315,0 chrXVI 905965 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.93;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2712,300,0 chrXVI 906237 . T C 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=181;Dels=0.00;FS=3.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.344;QD=22.63;ReadPosRankSum=2.409;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4096,456,0 chrXVI 906345 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.53;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3263,360,0 chrXVI 906363 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.87;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3133,348,0 chrXVI 906381 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=166;Dels=0.00;FS=7.999;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-0.916;QD=17.86;ReadPosRankSum=2.405;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:2997,339,0 chrXVI 906387 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=165;Dels=0.00;FS=5.412;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.128;QD=18.33;ReadPosRankSum=2.921;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3058,348,0 chrXVI 906509 . T C 2082 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.88;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2115,240,0 chrXVI 906627 . A G 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-0.522;QD=14.90;ReadPosRankSum=1.677;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:972,114,0 chrXVI 907043 . G T 4565.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.16;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4565,516,0 chrXVI 907815 . T C 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.057;QD=20.38;ReadPosRankSum=1.673;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2458,288,0 chrXVI 908134 . A C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=7.707;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.949;QD=18.01;ReadPosRankSum=2.389;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:2968,345,0 chrXVI 908156 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7589;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=16.74;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2661,294,0 chrXVI 908420 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6253;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.270;QD=19.13;ReadPosRankSum=1.686;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2922,336,0 chrXVI 908438 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.87;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2576,288,0 chrXVI 908447 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.04;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2758,300,0 chrXVI 908597 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.143;QD=22.55;ReadPosRankSum=1.688;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3540,408,0 chrXVI 908649 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.58;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3396,372,0 chrXVI 908706 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.12;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2346,258,0 chrXVI 908712 . A G 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.015;QD=18.95;ReadPosRankSum=1.702;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2231,270,0 chrXVI 908852 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.266;QD=22.20;ReadPosRankSum=1.688;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3485,402,0 chrXVI 908942 . G C 2811 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.30;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2844,327,0 chrXVI 909096 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.40;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3741,417,0 chrXVI 909597 . C A 787 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.71;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:820,93,0 chrXVI 909814 . T C 1642 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=23.46;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1675,192,0 chrXVI 909852 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.94;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1269,141,0 chrXVI 909859 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.11;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1280,138,0 chrXVI 909889 . T C 1590 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.49;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1623,186,0 chrXVI 909952 . T C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.982;QD=23.59;ReadPosRankSum=2.410;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2958,342,0 chrXVI 910009 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.80;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2233,246,0 chrXVI 910012 . T C 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-1.358;QD=17.94;ReadPosRankSum=1.701;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,110:115:99:2096,240,0 chrXVI 910104 . T C 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-1.587;QD=19.61;ReadPosRankSum=1.674;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2386,270,0 chrXVI 910111 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=19.82;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2352,264,0 chrXVI 910123 . G C 2022 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.38;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2055,234,0 chrXVI 910771 . C T 5705.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.77;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5705,621,0 chrXVI 910900 . T A 3163 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.27;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3196,354,0 chrXVI 911014 . T A 2042 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.646;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-0.323;QD=17.16;ReadPosRankSum=0.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2075,237,0 chrXVI 911029 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=18.77;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2285,252,0 chrXVI 911044 . A C 1949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-0.796;QD=17.56;ReadPosRankSum=1.701;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1982,225,0 chrXVI 911060 . C G 1686 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.38;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1719,201,0 chrXVI 911122 . G T 317 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=17.61;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,17:18:39:350,39,0 chrXVI 911898 . G A 1263 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1296,141,0 chrXVI 912387 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.5245;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.28;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3589,399,0 chrXVI 912647 . C A 2328 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.76;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2361,258,0 chrXVI 913446 . A G 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.153;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.726;QD=20.59;ReadPosRankSum=1.695;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1948,225,0 chrXVI 913468 . G C 2195 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.51;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2228,252,0 chrXVI 913526 . A T 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.352;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.470;QD=19.82;ReadPosRankSum=1.674;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2392,267,0 chrXVI 913665 . T C 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.183;QD=22.95;ReadPosRankSum=1.690;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3764,426,0 chrXVI 913687 . A C 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.992;HaplotypeScore=3.4945;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.720;QD=21.49;ReadPosRankSum=1.304;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3826,441,0 chrXVI 913712 . C A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.23;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3868,426,0 chrXVI 913748 . C G 2847 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.91;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2880,327,0 chrXVI 914046 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.82;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2315,255,0 chrXVI 914142 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=138;Dels=0.00;FS=2.920;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.278;QD=19.99;ReadPosRankSum=2.342;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2791,333,0 chrXVI 914589 . A G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.2548;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.625;QD=21.40;ReadPosRankSum=1.705;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2793,318,0 chrXVI 914775 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.2087;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.52;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3603,402,0 chrXVI 915113 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9172;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.11;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2275,255,0 chrXVI 915138 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.88;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2207,246,0 chrXVI 915200 . G C 2928 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.18;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2961,342,0 chrXVI 915973 . A G 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=174;Dels=0.00;FS=3.011;HaplotypeScore=8.1748;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.391;QD=22.57;ReadPosRankSum=2.379;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3928,444,0 chrXVI 916067 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3086,342,0 chrXVI 916537 . A G 2695 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.65;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2728,321,0 chrXVI 916779 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.57;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2862,312,0 chrXVI 916830 . A T 2204 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.96;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2237,243,0 chrXVI 916877 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.35;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2134,234,0 chrXVI 917110 . C T 1714 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.26;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1747,198,0 chrXVI 917323 . G C 2987 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.96;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3020,360,0 chrXVI 917353 . A G 3183 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.42;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3216,366,0 chrXVI 917368 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.968;QD=20.13;ReadPosRankSum=2.312;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2912,336,0 chrXVI 917515 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.84;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3647,408,0 chrXVI 918199 . C A 2092 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.13;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2125,237,0 chrXVI 918243 . G T 2185 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6983;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.23;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2218,249,0 chrXVI 918292 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.06;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2179,246,0 chrXVI 918448 . T C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.068;QD=21.67;ReadPosRankSum=2.385;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2525,291,0 chrXVI 918658 . G A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4017,453,0 chrXVI 918763 . C A 3139 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.21;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3172,363,0 chrXVI 918769 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.88;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2770,312,0 chrXVI 918874 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.376;QD=18.75;ReadPosRankSum=1.690;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3183,363,0 chrXVI 918999 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5696;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.41;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2156,246,0 chrXVI 919046 . A G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6116;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.032;QD=18.61;ReadPosRankSum=1.700;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2062,234,0 chrXVI 919303 . A T 2148 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.85;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2181,246,0 chrXVI 919423 . A C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.677;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.095;QD=23.38;ReadPosRankSum=1.656;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2161,249,0 chrXVI 919457 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2386,261,0 chrXVI 919665 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.0737;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.75;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4038,438,0 chrXVI 919701 . C T 4686.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.66;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4686,516,0 chrXVI 919842 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=193;Dels=0.00;FS=7.049;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.248;QD=20.48;ReadPosRankSum=2.424;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3952,447,0 chrXVI 919848 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.258;QD=20.10;ReadPosRankSum=1.714;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3778,426,0 chrXVI 919984 . G C 2819 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.58;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2852,333,0 chrXVI 920045 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=0.142;QD=17.07;ReadPosRankSum=1.708;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2543,285,0 chrXVI 920048 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=142;Dels=0.00;FS=8.164;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=-1.589;QD=17.11;ReadPosRankSum=2.379;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:2463,279,0 chrXVI 920519 . A C 1373 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1406,162,0 chrXVI 920779 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.0889;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.864;QD=24.09;ReadPosRankSum=2.355;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2538,288,0 chrXVI 920827 . G A 2073 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=18.68;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2106,228,0 chrXVI 920829 . C T 1955 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.286;QD=17.00;ReadPosRankSum=-0.828;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1988,225,0 chrXVI 920832 . G C 2016 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=16.26;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2049,234,0 chrXVI 920877 . G A 3107 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.5309;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=18.83;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3140,360,0 chrXVI 921047 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.44;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5138,564,0 chrXVI 921116 . A G 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=219;Dels=0.00;FS=5.240;HaplotypeScore=6.6472;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=-0.787;QD=17.81;ReadPosRankSum=3.307;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:4,212:219:99:3901,450,0 chrXVI 921117 . A C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=215;Dels=0.00;FS=5.412;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.930;QD=16.93;ReadPosRankSum=2.939;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:3641,434,0 chrXVI 921154 . C T 4393.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=204.4436;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.08;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4393,492,0 chrXVI 921247 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.21;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3516,390,0 chrXVI 921271 . A C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.992;DP=161;Dels=0.00;FS=18.484;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.148;QD=17.31;ReadPosRankSum=4.109;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:6,154:161:99:2820,324,0 chrXVI 921352 . A C 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.722;QD=19.07;ReadPosRankSum=1.684;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2779,318,0 chrXVI 921490 . C G 3515.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.68;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3515,405,0 chrXVI 921713 . A C 1802 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=18.77;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1835,210,0 chrXVI 921728 . C T 1583 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=14.26;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1616,177,0 chrXVI 921737 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=11.92;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1297,144,0 chrXVI 921810 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=15.29;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1852,210,0 chrXVI 921813 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=15.62;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1861,213,0 chrXVI 921845 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7555;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.43;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2404,273,0 chrXVI 921998 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.15;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2915,327,0 chrXVI 922220 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.95;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3310,384,0 chrXVI 922297 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.1644;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.182;QD=20.99;ReadPosRankSum=1.713;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3842,456,0 chrXVI 922391 . C T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4073,468,0 chrXVI 922477 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.621;QD=20.87;ReadPosRankSum=1.658;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3924,465,0 chrXVI 922622 . A C 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.025;QD=21.86;ReadPosRankSum=1.715;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4568,522,0 chrXVI 922782 . T C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=4.271;HaplotypeScore=5.8254;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.777;QD=20.30;ReadPosRankSum=2.273;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2570,288,0 chrXVI 922830 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=14.9386;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.86;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2932,318,0 chrXVI 922942 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.89;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2331,258,0 chrXVI 923175 . T C 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.222;QD=22.31;ReadPosRankSum=1.643;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2643,303,0 chrXVI 923621 . A G 2683 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=20.64;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2716,312,0 chrXVI 923648 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=19.37;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2203,249,0 chrXVI 923654 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.314;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;MQRankSum=-1.347;QD=17.38;ReadPosRankSum=1.700;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1910,222,0 chrXVI 923671 . A C 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.6271;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;MQRankSum=-1.441;QD=14.53;ReadPosRankSum=1.700;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1588,186,0 chrXVI 923684 . G C 1409 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=13.05;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1442,165,0 chrXVI 923699 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;QD=11.18;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1252,147,0 chrXVI 923722 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=12.09;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1581,177,0 chrXVI 923733 . T A 1541 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=12.33;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1574,177,0 chrXVI 923750 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;MQRankSum=-0.477;QD=14.29;ReadPosRankSum=1.705;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1848,213,0 chrXVI 923772 . T G 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.886;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;MQRankSum=0.256;QD=15.69;ReadPosRankSum=1.401;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1837,207,0 chrXVI 923828 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=13.76;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1203,138,0 chrXVI 923850 . C G 1113 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=35.75;MQ0=0;QD=12.79;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1146,141,0 chrXVI 923860 . A C 1153 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=90;Dels=0.00;FS=3.208;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;MQRankSum=-1.347;QD=12.81;ReadPosRankSum=1.694;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1186,149,0 chrXVI 923864 . A G 1144 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.366;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;MQRankSum=-1.615;QD=12.85;ReadPosRankSum=1.693;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1177,147,0 chrXVI 923870 . A T 1170 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;MQRankSum=0.657;QD=13.45;ReadPosRankSum=1.692;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1203,144,0 chrXVI 923907 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=19.18;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2220,261,0 chrXVI 923956 . A G 2564 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=22.49;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2597,291,0 chrXVI 924009 . G A 2124 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=84.0862;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=20.82;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2157,234,0 chrXVI 924094 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=21.01;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2029,222,0 chrXVI 924127 . G C 1686 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=17.94;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1719,198,0 chrXVI 924130 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=18.60;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1930,216,0 chrXVI 924152 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=19.92;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2065,231,0 chrXVI 924180 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=17.28;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1934,219,0 chrXVI 924915 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.78;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3424,390,0 chrXVI 924943 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.09;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3269,357,0 chrXVI 925093 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=132;Dels=0.00;FS=10.604;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.436;QD=20.62;ReadPosRankSum=2.393;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2755,318,0 chrXVI 925172 . C G 3716.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=26.5303;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.70;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,203:210:99:3716,423,0 chrXVI 925240 . T A 3643.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;DP=286;Dels=0.00;FS=20.010;HaplotypeScore=17.1868;MLEAC=1;MLEAF=0.500;MQ=56.14;MQ0=0;MQRankSum=-1.571;QD=12.74;ReadPosRankSum=-1.048;SB=-7.580e+02 GT:AD:DP:GQ:PL 0/1:111,175:286:99:3643,0,1899 chrXVI 925358 . A G 4011.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.558;DP=359;Dels=0.00;FS=4.901;HaplotypeScore=21.6296;MLEAC=1;MLEAF=0.500;MQ=52.09;MQ0=0;MQRankSum=-3.741;QD=11.17;ReadPosRankSum=1.010;SB=-1.930e+03 GT:AD:DP:GQ:PL 0/1:142,215:359:99:4011,0,2540 chrXVI 925371 . G A 1508.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.718;DP=388;Dels=0.00;FS=1.872;HaplotypeScore=25.2611;MLEAC=1;MLEAF=0.500;MQ=53.12;MQ0=0;MQRankSum=-1.155;QD=3.89;ReadPosRankSum=0.487;SB=-7.110e+02 GT:AD:DP:GQ:PL 0/1:275,110:388:99:1538,0,5383 chrXVI 925491 . A T 8974.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=391;Dels=0.00;FS=6.513;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.643;QD=22.95;ReadPosRankSum=2.286;SB=-4.862e+03 GT:AD:DP:GQ:PL 1/1:2,389:391:99:8974,982,0 chrXVI 925492 . T C 1945.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.272;DP=395;Dels=0.00;FS=1.683;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=0;MQRankSum=-1.086;QD=4.92;ReadPosRankSum=-0.376;SB=-1.250e+03 GT:AD:DP:GQ:PL 0/1:246,149:395:99:1975,0,4680 chrXVI 925559 . T C 3506.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.997;DP=352;Dels=0.00;FS=4.910;HaplotypeScore=14.6022;MLEAC=1;MLEAF=0.500;MQ=52.04;MQ0=0;MQRankSum=-0.236;QD=9.96;ReadPosRankSum=0.394;SB=-2.028e+03 GT:AD:DP:GQ:PL 0/1:135,215:352:99:3506,0,1943 chrXVI 925572 . C T 7573.01 filter AC=2;AF=1.00;AN=2;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.93;SB=-4.444e+03 GT:AD:DP:GQ:PL 1/1:0,379:380:99:7573,820,0 chrXVI 925584 . T C 6956.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.556;DP=384;Dels=0.00;FS=17.270;HaplotypeScore=2.6191;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=0.226;QD=18.11;ReadPosRankSum=3.796;SB=-4.197e+03 GT:AD:DP:GQ:PL 1/1:5,378:384:99:6956,801,0 chrXVI 925593 . G C 6893.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=10.0519;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.00;SB=-4.313e+03 GT:AD:DP:GQ:PL 1/1:0,378:383:99:6893,818,0 chrXVI 925606 . A G 1865.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.584;DP=410;Dels=0.00;FS=6.618;HaplotypeScore=14.6752;MLEAC=1;MLEAF=0.500;MQ=53.25;MQ0=0;MQRankSum=3.156;QD=4.55;ReadPosRankSum=1.407;SB=-1.049e+03 GT:AD:DP:GQ:PL 0/1:252,153:410:99:1895,0,3808 chrXVI 925840 . C G 1898.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.994;DP=369;Dels=0.00;FS=1.289;HaplotypeScore=14.0868;MLEAC=1;MLEAF=0.500;MQ=56.14;MQ0=0;MQRankSum=1.719;QD=5.14;ReadPosRankSum=-1.446;SB=-9.770e+02 GT:AD:DP:GQ:PL 0/1:230,135:369:99:1928,0,4405 chrXVI 925898 . C T 2059.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.402;DP=401;Dels=0.00;FS=7.583;HaplotypeScore=26.8405;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-0.921;QD=5.13;ReadPosRankSum=0.288;SB=-9.770e+02 GT:AD:DP:GQ:PL 0/1:260,141:401:99:2089,0,5048 chrXVI 925939 . T C 9599.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.568;DP=420;Dels=0.00;FS=10.685;HaplotypeScore=40.4568;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.857;QD=22.85;ReadPosRankSum=3.780;SB=-4.168e+03 GT:AD:DP:GQ:PL 1/1:5,413:420:99:9599,1101,0 chrXVI 926181 . C T 9964.01 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.84;SB=-4.236e+03 GT:AD:DP:GQ:PL 1/1:0,418:418:99:9964,1107,0 chrXVI 926226 . T C 2177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.637;DP=391;Dels=0.00;FS=0.381;HaplotypeScore=36.1932;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=0.910;QD=5.57;ReadPosRankSum=-0.020;SB=-1.243e+03 GT:AD:DP:GQ:PL 0/1:244,141:391:99:2207,0,4723 chrXVI 926352 . T C 7265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=336;Dels=0.00;FS=3.023;HaplotypeScore=14.3451;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.203;QD=21.62;ReadPosRankSum=1.722;SB=-4.016e+03 GT:AD:DP:GQ:PL 1/1:1,332:336:99:7265,810,0 chrXVI 926359 . A T 1520.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.699;DP=333;Dels=0.00;FS=3.725;HaplotypeScore=9.7278;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-1.170;QD=4.56;ReadPosRankSum=-1.512;SB=-9.680e+02 GT:AD:DP:GQ:PL 0/1:213,120:333:99:1550,0,4267 chrXVI 926386 . C G 3886.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=36.1385;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=0.855;QD=11.74;ReadPosRankSum=-0.287;SB=-2.099e+03 GT:AD:DP:GQ:PL 0/1:117,211:331:99:3886,0,1598 chrXVI 926469 . C T 2745.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.704;DP=397;Dels=0.00;FS=1.659;HaplotypeScore=21.0810;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=-0.096;QD=6.91;ReadPosRankSum=0.833;SB=-1.359e+03 GT:AD:DP:GQ:PL 0/1:236,159:397:99:2775,0,4692 chrXVI 926512 . A G 2128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.028;DP=363;Dels=0.00;FS=0.819;HaplotypeScore=33.3328;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-2.632;QD=5.86;ReadPosRankSum=0.099;SB=-1.100e+03 GT:AD:DP:GQ:PL 0/1:227,135:363:99:2158,0,4507 chrXVI 927881 . T C 88.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=11;Dels=0.00;FS=22.175;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=-2.262;QD=8.02;ReadPosRankSum=2.262;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:3,8:11:15:121,15,0 chrXVI 927907 . A C 1847 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.01;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=7.13;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:1880,219,0 chrXVI 927910 . A C 1278.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.940;DP=271;Dels=0.00;FS=11.341;HaplotypeScore=10.2262;MLEAC=1;MLEAF=0.500;MQ=36.89;MQ0=0;MQRankSum=-0.430;QD=4.72;ReadPosRankSum=1.239;SB=-1.094e+03 GT:AD:DP:GQ:PL 0/1:75,193:271:99:1308,0,355 chrXVI 927927 . G C 620.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.765;DP=327;Dels=0.01;FS=8.401;HaplotypeScore=27.4451;MLEAC=1;MLEAF=0.500;MQ=41.11;MQ0=0;MQRankSum=-3.189;QD=1.90;ReadPosRankSum=-0.446;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:249,75:325:99:650,0,2768 chrXVI 927980 . A G 10436.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=495;Dels=0.00;FS=14.829;HaplotypeScore=36.3066;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=0.949;QD=21.08;ReadPosRankSum=2.961;SB=-3.713e+03 GT:AD:DP:GQ:PL 1/1:3,488:495:99:10436,1185,0 chrXVI 928039 . G A 5888.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.786;DP=533;Dels=0.00;FS=10.486;HaplotypeScore=34.8697;MLEAC=1;MLEAF=0.500;MQ=47.78;MQ0=0;MQRankSum=11.189;QD=11.05;ReadPosRankSum=-1.069;SB=-1.371e+03 GT:AD:DP:GQ:PL 0/1:214,317:533:99:5888,0,3212 chrXVI 928086 . C T 5921.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.052;DP=511;Dels=0.00;FS=8.529;HaplotypeScore=13.0429;MLEAC=1;MLEAF=0.500;MQ=45.37;MQ0=0;MQRankSum=8.437;QD=11.59;ReadPosRankSum=-0.499;SB=-2.354e+03 GT:AD:DP:GQ:PL 0/1:173,337:511:99:5921,0,2564 chrXVI 928098 . A T 6258.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;DP=501;Dels=0.00;FS=7.100;HaplotypeScore=28.9790;MLEAC=1;MLEAF=0.500;MQ=45.64;MQ0=0;MQRankSum=9.100;QD=12.49;ReadPosRankSum=1.466;SB=-2.912e+03 GT:AD:DP:GQ:PL 0/1:153,347:501:99:6258,0,2238 chrXVI 928167 . C G 597.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.622;DP=437;Dels=0.00;FS=46.709;HaplotypeScore=21.4331;MLEAC=1;MLEAF=0.500;MQ=49.87;MQ0=0;MQRankSum=-4.630;QD=1.37;ReadPosRankSum=0.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:343,91:437:99:627,0,5799 chrXVI 928174 . G A 706.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.765;DP=435;Dels=0.00;FS=58.640;HaplotypeScore=19.8735;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=0;MQRankSum=-4.071;QD=1.62;ReadPosRankSum=0.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:334,101:435:99:736,0,5919 chrXVI 928226 . T C 8183.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.967;DP=482;Dels=0.00;FS=0.000;HaplotypeScore=31.0767;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.798;QD=16.98;ReadPosRankSum=0.291;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,471:482:99:8183,963,0 chrXVI 928253 . G T 5429.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.692;DP=463;Dels=0.00;FS=105.851;HaplotypeScore=16.3982;MLEAC=1;MLEAF=0.500;MQ=51.38;MQ0=0;MQRankSum=12.262;QD=11.73;ReadPosRankSum=4.720;SB=-1.478e+03 GT:AD:DP:GQ:PL 0/1:157,303:463:99:5429,0,1543 chrXVI 928457 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=23.68;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2188,240,0 chrXVI 928512 . T G 2198 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=21.98;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2231,267,0 chrXVI 928541 . T C 2066 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=19.13;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2099,252,0 chrXVI 928546 . C A 2057 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;QD=19.78;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2090,237,0 chrXVI 928549 . C T 1995 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=19.18;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2028,234,0 chrXVI 928569 . T A 1855 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=18.19;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1888,213,0 chrXVI 928648 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=20.64;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1560,180,0 chrXVI 928653 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=20.33;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1436,162,0 chrXVI 928665 . T C 1054 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=18.82;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1087,126,0 chrXVI 928669 . T C 989 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=19.78;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1022,120,0 chrXVI 928675 . T C 918 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=18.00;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:951,111,0 chrXVI 928687 . A G 866 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=18.04;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:899,105,0 chrXVI 928724 . G T 586 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=31.8441;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=15.03;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:619,75,0 chrXVI 928767 . A G 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=2.976;HaplotypeScore=57.9805;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;MQRankSum=1.552;QD=18.64;ReadPosRankSum=2.375;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1282,150,0 chrXVI 928823 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=18.19;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1197,132,0 chrXVI 928847 . C T 690 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=14.37;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:723,81,0 chrXVI 928867 . G A 554 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=13.19;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:66:587,66,0 chrXVI 928877 . T C 629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;MQRankSum=-2.289;QD=13.67;ReadPosRankSum=2.343;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:75:662,75,0 chrXVI 928880 . A G 591 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=12.85;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:72:624,72,0 chrXVI 928973 . C T 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.701;HaplotypeScore=3.3321;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=1.172;QD=21.34;ReadPosRankSum=1.630;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1484,165,0 chrXVI 928974 . T C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1207;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=1.413;QD=20.26;ReadPosRankSum=2.379;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1431,165,0 chrXVI 929010 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=20.78;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1945,216,0 chrXVI 929314 . G T 1082 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=18.03;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1115,123,0 chrXVI 929330 . C G 973 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=16.78;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1006,114,0 chrXVI 929334 . A T 960 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=16.00;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:993,108,0 chrXVI 929341 . A G 967 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=15.60;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1000,114,0 chrXVI 929366 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=17.07;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1040,117,0 chrXVI 929386 . G C 1131 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=16.39;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1164,144,0 chrXVI 929428 . A G 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=-0.481;QD=19.75;ReadPosRankSum=1.684;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1455,174,0 chrXVI 929431 . C A 1426 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=20.08;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1459,168,0 chrXVI 929441 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=18.96;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1455,168,0 chrXVI 929492 . A G 946 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;QD=19.31;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:979,120,0 chrXVI 929522 . C T 780 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=21.67;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:813,93,0 chrXVI 929529 . C A 655 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.13;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:688,84,0 chrXVI 929551 . T C 277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.718;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;MQRankSum=-0.209;QD=11.08;ReadPosRankSum=2.300;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:3,22:25:39:310,39,0 chrXVI 929554 . G A 314 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=12.56;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:42:347,42,0 chrXVI 929566 . A G 460 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=14.84;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:493,60,0 chrXVI 929586 . T C 838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;MQRankSum=-1.606;QD=15.24;ReadPosRankSum=1.669;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:871,99,0 chrXVI 929606 . A T 1080 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=14.79;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1113,129,0 chrXVI 929678 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=16.90;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1503,168,0 chrXVI 929679 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=16.77;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1492,168,0 chrXVI 929716 . T C 676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;MQRankSum=-0.957;QD=10.09;ReadPosRankSum=1.474;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:84:709,84,0 chrXVI 929721 . A T 640 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=37.0229;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=9.70;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:78:673,78,0 chrXVI 929744 . C T 415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=61;Dels=0.00;FS=2.519;HaplotypeScore=46.4160;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.684;QD=6.80;ReadPosRankSum=2.885;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:51:448,51,0 chrXVI 929748 . T C 398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.897;DP=65;Dels=0.00;FS=2.474;HaplotypeScore=2.6906;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;MQRankSum=-2.143;QD=6.12;ReadPosRankSum=2.743;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:4,61:65:51:431,51,0 chrXVI 929755 . T C 586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8453;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;MQRankSum=-1.534;QD=8.37;ReadPosRankSum=1.534;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:75:619,75,0 chrXVI 929817 . A T 2398 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=20.50;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2431,273,0 chrXVI 929838 . C A 2811 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=23.62;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2844,312,0 chrXVI 929902 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.190;DP=138;Dels=0.00;FS=5.279;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;MQRankSum=-1.387;QD=21.30;ReadPosRankSum=3.267;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:4,133:138:99:2973,342,0 chrXVI 929903 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=22.72;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3078,345,0 chrXVI 929977 . T C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=104;Dels=0.00;FS=6.681;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=0.012;QD=20.28;ReadPosRankSum=2.402;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2142,252,0 chrXVI 930127 . A G 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;MQRankSum=0.992;QD=16.76;ReadPosRankSum=1.673;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2011,234,0 chrXVI 930148 . A C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=111;Dels=0.00;FS=2.594;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;MQRankSum=-1.137;QD=14.45;ReadPosRankSum=2.937;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:1637,186,0 chrXVI 930167 . T C 1059 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=12.17;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1092,135,0 chrXVI 930175 . A T 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;MQRankSum=-0.205;QD=13.62;ReadPosRankSum=1.695;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1300,144,0 chrXVI 930183 . C A 1165 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=12.94;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1198,135,0 chrXVI 930263 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.03;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=20.95;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1960,213,0 chrXVI 930266 . T C 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=96;Dels=0.00;FS=2.948;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=0.557;QD=20.27;ReadPosRankSum=2.398;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1979,225,0 chrXVI 930339 . C A 2489 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=20.74;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2522,285,0 chrXVI 930341 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=19.67;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2374,282,0 chrXVI 930437 . G T 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.832;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.437;QD=18.16;ReadPosRankSum=2.409;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2230,249,0 chrXVI 930438 . C G 2125 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.56;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2158,246,0 chrXVI 930496 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7528;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=17.36;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2655,306,0 chrXVI 930548 . C A 2144 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=21.6270;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=17.29;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2177,246,0 chrXVI 930549 . A T 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=2.787;HaplotypeScore=8.2223;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=0.998;QD=17.54;ReadPosRankSum=2.409;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2173,246,0 chrXVI 930581 . A T 2133 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.3415;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=16.41;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2166,252,0 chrXVI 930681 . A G 2908 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=22.20;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2941,342,0 chrXVI 930801 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.16;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2064,243,0 chrXVI 930805 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.72;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2140,240,0 chrXVI 930863 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.98;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1851,210,0 chrXVI 930944 . T G 1949 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=19.49;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1982,231,0 chrXVI 930946 . A T 1971 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=19.14;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2004,228,0 chrXVI 930986 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.27;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1674,183,0 chrXVI 930988 . T A 1567 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=17.03;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1600,180,0 chrXVI 931057 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.25;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1730,195,0 chrXVI 931077 . T C 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-0.272;QD=18.53;ReadPosRankSum=1.664;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1942,225,0 chrXVI 931141 . T C 1902 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.625;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=1.242;QD=17.78;ReadPosRankSum=1.667;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1935,237,0 chrXVI 931144 . G A 2056 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=20.36;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2089,234,0 chrXVI 931146 . C A 2105 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=20.44;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2138,237,0 chrXVI 931153 . A G 2035 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.76;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2068,237,0 chrXVI 931293 . T C 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=3.404;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.259;QD=21.76;ReadPosRankSum=1.705;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2797,324,0 chrXVI 931346 . T A 2812 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.4787;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.80;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2845,315,0 chrXVI 931568 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.090;QD=23.98;ReadPosRankSum=1.674;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4269,486,0 chrXVI 931709 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.90;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3274,357,0 chrXVI 931756 . T A 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.513;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.595;QD=23.47;ReadPosRankSum=1.705;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3037,336,0 chrXVI 931814 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.68;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3046,348,0 chrXVI 931903 . T C 3022 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2781;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.59;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3055,354,0 chrXVI 931935 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.21;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2918,321,0 chrXVI 931948 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.11;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2819,309,0 chrXVI 932030 . T A 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.418;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.418;QD=23.21;ReadPosRankSum=1.660;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3365,369,0 chrXVI 932149 . C G 3179 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.05;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3212,389,0 chrXVI 932310 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.885;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.013;QD=18.93;ReadPosRankSum=1.682;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2646,309,0 chrXVI 932313 . G C 2575 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.26;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:2608,291,0 chrXVI 932535 . T G 2425 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=19.40;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2458,291,0 chrXVI 932536 . G C 2326 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;MQRankSum=-1.503;QD=19.07;ReadPosRankSum=1.532;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2359,290,0 chrXVI 932537 . A G 2367 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;MQRankSum=-1.016;QD=19.24;ReadPosRankSum=1.618;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2400,293,0 chrXVI 932542 . A G 2546 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=19.89;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2579,305,0 chrXVI 932662 . A G 1754 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=1;QD=17.54;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1787,204,0 chrXVI 932753 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=1;QD=15.78;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1169,138,0 chrXVI 932770 . A C 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=-0.702;QD=16.07;ReadPosRankSum=1.685;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1222,153,0 chrXVI 932785 . C G 1018 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=14.75;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1051,129,0 chrXVI 932799 . T C 942 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=14.27;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:975,114,0 chrXVI 932855 . C T 257 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=7.34;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:33:290,33,0 chrXVI 932863 . T C 199.01 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=0;QD=8.29;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:27:232,27,0 chrXVI 932875 . C T 97.26 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=5.12;SB=-7.476e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:130,15,0 chrXVI 932882 . C A 129.13 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=7.60;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:162,18,0 chrXVI 932898 . A C 356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=29;Dels=0.00;FS=7.634;HaplotypeScore=24.9340;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;MQRankSum=-1.135;QD=12.28;ReadPosRankSum=1.614;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:45:389,45,0 chrXVI 932937 . A C 1078 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=19.60;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1111,129,0 chrXVI 933005 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.63;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1459,159,0 chrXVI 933110 . A G 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.892;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.601;QD=24.44;ReadPosRankSum=1.697;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2428,279,0 chrXVI 933187 . T G 1880 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1173;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=17.74;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1913,228,0 chrXVI 933190 . A G 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=6.233;HaplotypeScore=4.2599;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=2.118;QD=18.46;ReadPosRankSum=2.308;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,102:105:99:1971,225,0 chrXVI 933312 . A G 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=102;Dels=0.00;FS=3.047;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.447;QD=19.12;ReadPosRankSum=2.353;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1983,225,0 chrXVI 933316 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=19.08;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2075,237,0 chrXVI 933358 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.75;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2107,237,0 chrXVI 933378 . T C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.222;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-1.105;QD=20.75;ReadPosRankSum=1.567;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2212,252,0 chrXVI 933516 . A T 2085 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.69;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2118,234,0 chrXVI 933566 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.35;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1642,186,0 chrXVI 933773 . C A 1274 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.4097;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.59;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1307,144,0 chrXVI 933809 . A G 868 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.47;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:901,102,0 chrXVI 933831 . A C 1237 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.19;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1270,147,0 chrXVI 934175 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.169;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.209;QD=21.95;ReadPosRankSum=1.707;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3084,351,0 chrXVI 934444 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.3706;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.95;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1625,180,0 chrXVI 934546 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2568,285,0 chrXVI 934582 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.30;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2285,255,0 chrXVI 934734 . C G 3038 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3071,354,0 chrXVI 934801 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1682;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.44;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3220,360,0 chrXVI 934877 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=2.905;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.960;QD=20.80;ReadPosRankSum=2.373;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3328,375,0 chrXVI 934884 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.91;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3550,390,0 chrXVI 935125 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=109;Dels=0.00;FS=2.918;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-0.485;QD=21.55;ReadPosRankSum=2.405;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2382,270,0 chrXVI 935140 . C G 1967 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.38;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2000,225,0 chrXVI 935143 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=19.66;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2058,234,0 chrXVI 935183 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2741;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.65;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2028,225,0 chrXVI 935215 . C A 2443 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.36;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2476,270,0 chrXVI 935251 . A T 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=130;Dels=0.00;FS=3.043;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.239;QD=20.97;ReadPosRankSum=2.374;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2759,306,0 chrXVI 935432 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.556;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.549;QD=22.54;ReadPosRankSum=1.711;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3651,432,0 chrXVI 935715 . C A 2442 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.61;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2475,273,0 chrXVI 935906 . T C 2283 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.54;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2316,264,0 chrXVI 936101 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.95;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2121,240,0 chrXVI 936193 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.89;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2230,252,0 chrXVI 936327 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=4.393;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.988;QD=22.58;ReadPosRankSum=1.703;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2765,318,0 chrXVI 936363 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7091;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.93;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2450,273,0 chrXVI 936393 . G C 2040 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.92;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2073,237,0 chrXVI 936431 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.47;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1772,204,0 chrXVI 936638 . G C 2159 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=23.99;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2192,252,0 chrXVI 936912 . T G 1958 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.19;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1991,237,0 chrXVI 937101 . G C 1706 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.31;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1739,201,0 chrXVI 937175 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.30;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2666,294,0 chrXVI 937294 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.90;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1807,204,0 chrXVI 937324 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.81;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1677,195,0 chrXVI 937373 . A G 1158 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.82;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1191,135,0 chrXVI 937470 . A C 2156 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.18;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2189,252,0 chrXVI 937542 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=22.48;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2371,273,0 chrXVI 937559 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=22.67;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2119,246,0 chrXVI 937566 . G T 2092 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=22.74;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2125,240,0 chrXVI 937584 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=21.80;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2475,288,0 chrXVI 937701 . A T 2639 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.15;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2672,303,0 chrXVI 937774 . G A 1767 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=15.92;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1800,207,0 chrXVI 937780 . A G 1825 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;DP=117;Dels=0.00;FS=5.294;HaplotypeScore=7.4147;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;MQRankSum=-0.217;QD=15.60;ReadPosRankSum=2.302;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:1858,219,0 chrXVI 937788 . A G 1773 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=2.838;HaplotypeScore=5.6595;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;MQRankSum=-0.855;QD=16.42;ReadPosRankSum=2.404;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1806,207,0 chrXVI 937790 . A G 1812 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.7781;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;MQRankSum=1.443;QD=16.78;ReadPosRankSum=1.636;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1845,219,0 chrXVI 937822 . G T 1990 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=18.26;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2023,222,0 chrXVI 937854 . G T 2070 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.84;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2103,231,0 chrXVI 938035 . A G 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.310;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=1.640;QD=22.11;ReadPosRankSum=1.594;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1691,198,0 chrXVI 938071 . T G 2084 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.42;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2117,240,0 chrXVI 938107 . A T 1693 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.65;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1726,198,0 chrXVI 938109 . T C 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=83;Dels=0.00;FS=6.849;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=0.876;QD=20.27;ReadPosRankSum=2.361;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1715,198,0 chrXVI 938122 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9812;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.98;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2099,234,0 chrXVI 938304 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.67;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2802,312,0 chrXVI 938355 . T C 2913 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.42;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2946,339,0 chrXVI 938382 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.48;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2568,297,0 chrXVI 938521 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7075;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.06;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3828,429,0 chrXVI 938727 . A G 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.266;QD=19.50;ReadPosRankSum=1.682;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2705,303,0 chrXVI 938739 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.29;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2965,336,0 chrXVI 938989 . A G 997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.369;QD=16.08;ReadPosRankSum=1.675;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1030,120,0 chrXVI 939003 . G A 792 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=16.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:93:825,93,0 chrXVI 939137 . G A 201.01 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=13.40;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:234,27,0 chrXVI 939199 . A T 74.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;MQRankSum=-0.771;QD=4.14;ReadPosRankSum=0.578;SB=-2.652e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:12:107,12,0 chrXVI 939205 . T A 101.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=6.7354;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;MQRankSum=-0.952;QD=4.05;ReadPosRankSum=2.254;SB=-2.527e+01 GT:AD:DP:GQ:PL 1/1:2,23:25:15:134,15,0 chrXVI 939248 . A T 999 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=18.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1032,117,0 chrXVI 939435 . G C 1999 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=20.82;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2032,240,0 chrXVI 939489 . G C 1714 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=16.80;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1747,210,0 chrXVI 939496 . C G 1800 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=17.82;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,97:101:99:1833,207,0 chrXVI 939501 . A T 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=103;Dels=0.00;FS=6.323;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-1.303;QD=17.15;ReadPosRankSum=2.402;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1799,204,0 chrXVI 939591 . T C 1703 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.12;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1736,198,0 chrXVI 939609 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.697;DP=71;Dels=0.00;FS=12.458;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.427;QD=20.49;ReadPosRankSum=3.584;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:5,66:71:99:1488,168,0 chrXVI 939714 . T A 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=8.954;HaplotypeScore=6.1977;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.444;QD=20.13;ReadPosRankSum=2.307;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1764,198,0 chrXVI 939734 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=20.52;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1716,192,0 chrXVI 939747 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.30;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1643,198,0 chrXVI 939830 . A G 2268 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.38;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2301,273,0 chrXVI 939982 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.61;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2733,329,0 chrXVI 939999 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.80;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3111,342,0 chrXVI 940005 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.73;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3142,342,0 chrXVI 940365 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.466;QD=19.05;ReadPosRankSum=1.705;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2509,300,0 chrXVI 940653 . A G 2140 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2173,252,0 chrXVI 941142 . G C 777 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;QD=18.07;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,41:43:96:810,96,0 chrXVI 941176 . A G 537 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=20.65;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:66:570,66,0 chrXVI 941232 . A T 1794 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=23.61;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1827,201,0 chrXVI 941337 . G A 758 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=13.78;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:791,87,0 chrXVI 941339 . G A 671 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=13.42;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:75:704,75,0 chrXVI 941344 . G A 689 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=13.25;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:78:722,78,0 chrXVI 941348 . G A 707 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=12.40;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:740,81,0 chrXVI 941366 . C T 673 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=10.85;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:78:706,78,0 chrXVI 941460 . A T 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.397;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.040;QD=22.74;ReadPosRankSum=1.705;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2966,333,0 chrXVI 941559 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.7627;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=22.72;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3385,387,0 chrXVI 941642 . C T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.88;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4274,474,0 chrXVI 941694 . C T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.41;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4443,483,0 chrXVI 941772 . A T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.66;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4289,486,0 chrXVI 941801 . T C 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=195;Dels=0.00;FS=6.038;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.565;QD=22.48;ReadPosRankSum=2.943;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4383,501,0 chrXVI 941879 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.67;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4009,465,0 chrXVI 942010 . G C 3557.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=19.87;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3557,396,0 chrXVI 942021 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=185;Dels=0.00;FS=7.782;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.302;QD=18.96;ReadPosRankSum=2.369;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3508,402,0 chrXVI 942107 . G T 3045 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=20.57;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3078,351,0 chrXVI 942124 . A T 2739 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=18.76;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2772,300,0 chrXVI 942154 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=0;QD=15.91;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2467,279,0 chrXVI 942166 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;MQRankSum=-1.474;QD=14.09;ReadPosRankSum=1.680;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:1921,225,0 chrXVI 942173 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;QD=13.83;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1817,204,0 chrXVI 942193 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.04;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1718,192,0 chrXVI 942206 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=16.52;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1768,207,0 chrXVI 942208 . G C 1802 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=17.16;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1835,210,0 chrXVI 942307 . G A 1906 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=21.42;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1939,231,0 chrXVI 942311 . A G 1876 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=-0.936;QD=21.56;ReadPosRankSum=1.692;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1909,231,0 chrXVI 942315 . A G 1816 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=20.64;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1849,227,0 chrXVI 942354 . G T 1182 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;QD=18.76;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1215,147,0 chrXVI 942426 . T C 442 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.829;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=25.35;MQ0=5;MQRankSum=-1.734;QD=14.73;ReadPosRankSum=-1.734;SB=-5.443e-03 GT:AD:DP:GQ:PL 1/1:4,24:30:57:475,57,0 chrXVI 942427 . G A 475 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=5;QD=16.96;SB=-6.534e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:57:508,57,0 chrXVI 942466 . G T 454 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=18.16;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:57:487,57,0 chrXVI 942467 . T C 419 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=16.76;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:54:452,54,0 chrXVI 942468 . G T 394 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=15.76;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,24:25:51:427,51,0 chrXVI 942471 . T A 499 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=19.19;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:60:532,60,0 chrXVI 942478 . A G 472 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=18.15;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:60:505,60,0 chrXVI 942488 . G A 423 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=16.27;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:456,54,0 chrXVI 942574 . A T 122.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;DP=12;Dels=0.00;FS=15.563;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=3;MQRankSum=0.067;QD=10.18;ReadPosRankSum=0.067;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,8:12:18:155,18,0 chrXVI 942589 . G A 131.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=3;QD=11.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:21:164,21,0 chrXVI 942658 . T G 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=7.59;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:70,9,0 chrXVI 942659 . T A 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=7.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:72,9,0 chrXVI 942661 . G A 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=13.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:72,9,0